A4U88_RS14445 3e17a3f530f9ed8d6f300d489334e6f5 407 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 329 406 7.7E-22 T 25-04-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain A4U88_RS14445 3e17a3f530f9ed8d6f300d489334e6f5 407 Pfam PF07559 Flagellar basal body protein FlaE 172 288 1.0E-22 T 25-04-2017 IPR011491 Flagellar hook protein FlgE A4U88_RS14445 3e17a3f530f9ed8d6f300d489334e6f5 407 Pfam PF00460 Flagella basal body rod protein 4 33 4.2E-11 T 25-04-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 A4U88_RS14445 3e17a3f530f9ed8d6f300d489334e6f5 407 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 389 1.1E-98 T 25-04-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G A4U88_RS14445 3e17a3f530f9ed8d6f300d489334e6f5 407 SUPERFAMILY SSF117143 73 368 7.85E-84 T 25-04-2017 A4U88_RS14445 3e17a3f530f9ed8d6f300d489334e6f5 407 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 25-04-2017 IPR019776 Flagellar basal body rod protein, conserved site A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 Gene3D G3DSA:3.40.190.10 90 196 1.2E-19 T 25-04-2017 A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 Pfam PF03466 LysR substrate binding domain 92 286 7.6E-28 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 Gene3D G3DSA:1.10.10.10 6 89 1.5E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 SUPERFAMILY SSF53850 92 287 1.05E-28 T 25-04-2017 A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 SUPERFAMILY SSF46785 3 114 7.89E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.1E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06905 c95ee2b62a02a7587c14ad3bc58e69c5 289 Gene3D G3DSA:3.40.190.10 197 240 4.7E-9 T 25-04-2017 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 353 35.371 T 25-04-2017 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 SUPERFAMILY SSF53756 6 353 1.33E-130 T 25-04-2017 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 Gene3D G3DSA:3.40.50.2000 254 335 2.4E-6 T 25-04-2017 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 344 5.0E-37 T 25-04-2017 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 348 7.6E-115 T 25-04-2017 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 Gene3D G3DSA:3.40.50.2000 4 196 3.3E-76 T 25-04-2017 A4U88_RS03365 e5a9a983e559fef620f59b9496490d80 354 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 8.9E-49 T 25-04-2017 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS07270 36649e78398a8f4ab75ef099094bb65f 210 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 11 188 7.5E-42 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS07270 36649e78398a8f4ab75ef099094bb65f 210 SMART SM01007 11 190 5.1E-58 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS07270 36649e78398a8f4ab75ef099094bb65f 210 Gene3D G3DSA:3.40.225.10 3 209 2.7E-64 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS07270 36649e78398a8f4ab75ef099094bb65f 210 SUPERFAMILY SSF53639 5 209 2.16E-59 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS15750 0d6701a38cd1b93f52ed41cc5a5e4f34 468 PIRSF PIRSF000337 4 450 7.7E-147 T 25-04-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 A4U88_RS15750 0d6701a38cd1b93f52ed41cc5a5e4f34 468 Gene3D G3DSA:3.20.20.30 1 317 7.2E-136 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15750 0d6701a38cd1b93f52ed41cc5a5e4f34 468 Gene3D G3DSA:3.20.20.30 354 442 7.2E-136 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15750 0d6701a38cd1b93f52ed41cc5a5e4f34 468 SUPERFAMILY SSF51679 4 442 9.55E-129 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15750 0d6701a38cd1b93f52ed41cc5a5e4f34 468 Pfam PF00296 Luciferase-like monooxygenase 35 392 9.0E-54 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15750 0d6701a38cd1b93f52ed41cc5a5e4f34 468 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 436 1.5E-171 T 25-04-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 A4U88_RS09990 ebaf298beaee0bf07b1768ca6c119e52 402 Gene3D G3DSA:1.20.1250.20 214 393 1.3E-11 T 25-04-2017 A4U88_RS09990 ebaf298beaee0bf07b1768ca6c119e52 402 Gene3D G3DSA:1.20.1250.20 19 188 1.2E-22 T 25-04-2017 A4U88_RS09990 ebaf298beaee0bf07b1768ca6c119e52 402 Pfam PF07690 Major Facilitator Superfamily 26 334 2.5E-31 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS09990 ebaf298beaee0bf07b1768ca6c119e52 402 SUPERFAMILY SSF103473 7 394 1.03E-46 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS20265 93202be75eca5db3adc546c2dfd8c5bf 313 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 154 267 4.5E-13 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS20265 93202be75eca5db3adc546c2dfd8c5bf 313 SUPERFAMILY SSF54593 1 281 9.07E-32 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS20265 93202be75eca5db3adc546c2dfd8c5bf 313 Gene3D G3DSA:3.10.180.10 1 134 1.9E-5 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS20265 93202be75eca5db3adc546c2dfd8c5bf 313 Gene3D G3DSA:3.10.180.10 154 284 2.4E-32 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SMART SM00823 Phosphopantetheine attachment site 1994 2063 0.039 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SMART SM00823 Phosphopantetheine attachment site 949 1021 7.1E-4 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF56801 1469 2005 6.93E-132 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:1.10.1200.10 3045 3107 7.0E-17 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:1.10.1200.10 1999 2063 8.2E-19 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:1.10.1200.10 954 1022 8.4E-19 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2558 2959 1.0E-111 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1510 1914 5.5E-111 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 469 870 2.4E-115 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF56801 2494 3053 1.44E-131 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF52777 8 165 3.22E-19 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF13745 HxxPF-repeated domain 2396 2479 9.2E-18 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF13745 HxxPF-repeated domain 1350 1440 2.8E-21 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF56801 413 965 1.57E-129 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1629 1640 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00975 Thioesterase domain 3124 3232 4.4E-16 T 25-04-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF52777 2263 2502 2.95E-50 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF52777 1215 1461 9.64E-59 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00668 Condensation domain 1038 1328 1.6E-62 T 25-04-2017 IPR001242 Condensation domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00668 Condensation domain 2077 2373 4.7E-54 T 25-04-2017 IPR001242 Condensation domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00668 Condensation domain 17 260 3.4E-22 T 25-04-2017 IPR001242 Condensation domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.1820 3264 3335 1.9E-24 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.1820 3108 3228 1.9E-24 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00550 Phosphopantetheine attachment site 1999 2059 7.0E-10 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00550 Phosphopantetheine attachment site 956 1017 1.5E-9 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00550 Phosphopantetheine attachment site 3042 3104 1.1E-6 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.980 1483 1635 8.7E-30 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2676 2687 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF47336 3033 3103 9.95E-12 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF52777 179 417 2.67E-21 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.30.300.30 1886 1998 5.3E-30 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.30.300.30 2931 3044 2.0E-33 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.30.300.30 841 953 2.3E-29 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.980 443 604 3.4E-42 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.980 2529 2684 4.4E-33 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00501 AMP-binding enzyme 449 845 2.6E-80 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00501 AMP-binding enzyme 2537 2935 1.8E-78 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF00501 AMP-binding enzyme 1491 1890 2.6E-81 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 1899 1970 9.8E-10 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Pfam PF13193 AMP-binding enzyme C-terminal domain 854 927 7.2E-7 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF52777 1040 1210 2.56E-36 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 ProSitePatterns PS00012 Phosphopantetheine attachment site. 976 991 - T 25-04-2017 IPR006162 Phosphopantetheine attachment site A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 ProSitePatterns PS00455 Putative AMP-binding domain signature. 595 606 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF47336 946 1018 7.98E-14 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF47336 1987 2059 3.66E-14 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF52777 2081 2255 9.0E-30 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.980 1636 1805 3.5E-39 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.980 605 755 7.2E-27 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:3.40.50.980 2685 2849 7.2E-37 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 SUPERFAMILY SSF53474 3110 3336 3.57E-29 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:2.30.38.10 1806 1881 2.8E-23 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:2.30.38.10 756 835 7.1E-24 T 25-04-2017 A4U88_RS15370 89307ec1f4e5ce71a8ff0736812c4aa9 3338 Gene3D G3DSA:2.30.38.10 2850 2926 1.8E-21 T 25-04-2017 A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 SUPERFAMILY SSF50129 6 145 1.13E-43 T 25-04-2017 IPR011032 GroES-like A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 SMART SM00829 22 338 7.0E-6 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 Pfam PF16884 N-terminal domain of oxidoreductase 8 114 9.8E-42 T 25-04-2017 A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 SUPERFAMILY SSF50129 292 338 7.06E-6 T 25-04-2017 IPR011032 GroES-like A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 Gene3D G3DSA:3.90.180.10 5 141 1.2E-54 T 25-04-2017 IPR011032 GroES-like A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 SUPERFAMILY SSF51735 125 306 7.61E-47 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 Gene3D G3DSA:3.40.50.720 142 308 9.2E-68 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14585 5f4db285c5962292ff9b7106826dea5f 343 Pfam PF00107 Zinc-binding dehydrogenase 160 298 1.4E-19 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 SUPERFAMILY SSF46934 4 54 1.53E-18 T 25-04-2017 IPR009060 UBA-like GO:0005515 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 SUPERFAMILY SSF54713 56 139 1.67E-20 T 25-04-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 Hamap MF_00050 Elongation factor Ts [tsf]. 1 280 79.741 T 25-04-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 282 1.4E-120 T 25-04-2017 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 SUPERFAMILY SSF54713 142 281 8.18E-54 T 25-04-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 25-04-2017 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 Pfam PF00889 Elongation factor TS 71 263 2.0E-67 T 25-04-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 25-04-2017 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 Gene3D G3DSA:1.10.286.20 183 226 5.7E-20 T 25-04-2017 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 Gene3D G3DSA:1.10.8.10 3 55 9.3E-28 T 25-04-2017 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 Gene3D G3DSA:3.30.479.20 227 262 3.8E-32 T 25-04-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS19270 a0d7d1d75163f74613c02455c9dea99e 283 Gene3D G3DSA:3.30.479.20 142 178 3.8E-32 T 25-04-2017 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 Gene3D G3DSA:3.40.50.2300 4 141 2.4E-26 T 25-04-2017 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 SUPERFAMILY SSF52172 4 159 1.85E-29 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 Pfam PF00196 Bacterial regulatory proteins, luxR family 135 188 5.2E-17 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 Pfam PF00072 Response regulator receiver domain 4 113 5.7E-23 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 166 3.7E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 178 3.7E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 150 3.7E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 Gene3D G3DSA:1.10.10.10 142 189 8.2E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 SMART SM00421 133 190 1.3E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16510 f14c0f20835718e500e8305a38bfc3b1 199 SMART SM00448 2 113 6.8E-23 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 593 2.2E-247 T 25-04-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 608 37.398 T 25-04-2017 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 SMART SM00382 184 323 1.9E-26 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 SUPERFAMILY SSF52540 141 391 1.31E-72 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 5.2E-46 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Gene3D G3DSA:3.40.50.300 144 331 1.9E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Pfam PF01434 Peptidase family M41 382 591 7.2E-82 T 25-04-2017 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 25-04-2017 IPR003960 ATPase, AAA-type, conserved site GO:0005524 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Gene3D G3DSA:1.10.8.60 332 406 3.2E-28 T 25-04-2017 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 Pfam PF06480 FtsH Extracellular 5 93 6.2E-16 T 25-04-2017 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 A4U88_RS01925 5b8cda0f72f6ba337267ef4b6af7fbb9 643 SUPERFAMILY SSF140990 402 601 1.57E-72 T 25-04-2017 A4U88_RS10915 d8b2bc3588a5d6a27d3414fb21bcb0b0 231 SUPERFAMILY SSF109604 30 231 4.08E-58 T 25-04-2017 A4U88_RS10915 d8b2bc3588a5d6a27d3414fb21bcb0b0 231 Pfam PF01966 HD domain 50 150 5.0E-9 T 25-04-2017 IPR006674 HD domain A4U88_RS10915 d8b2bc3588a5d6a27d3414fb21bcb0b0 231 Gene3D G3DSA:1.10.3210.10 26 164 1.7E-41 T 25-04-2017 IPR006674 HD domain A4U88_RS10915 d8b2bc3588a5d6a27d3414fb21bcb0b0 231 Gene3D G3DSA:1.10.3210.10 203 231 1.7E-41 T 25-04-2017 IPR006674 HD domain A4U88_RS10915 d8b2bc3588a5d6a27d3414fb21bcb0b0 231 SMART SM00471 43 160 4.8E-5 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 PIRSF PIRSF004911 1 342 2.2E-121 T 25-04-2017 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 Pfam PF04055 Radical SAM superfamily 118 181 4.9E-7 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 2.8E-159 T 25-04-2017 IPR022462 Lysine-2,3-aminomutase-like A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 Pfam PF13353 4Fe-4S single cluster domain 111 180 1.6E-6 T 25-04-2017 A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 TIGRFAM TIGR00238 TIGR00238: KamA family protein 3 328 3.1E-134 T 25-04-2017 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 SUPERFAMILY SSF102114 102 324 6.93E-26 T 25-04-2017 A4U88_RS01540 c0ebbff2f9c1dcf43aa395314dbf4159 342 Gene3D G3DSA:3.20.20.70 105 314 1.5E-15 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 2.0E-30 T 25-04-2017 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 25-04-2017 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 3.3E-57 T 25-04-2017 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.32 T 25-04-2017 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 SUPERFAMILY SSF64484 343 939 0.0 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 SUPERFAMILY SSF64484 11 226 0.0 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 SUPERFAMILY SSF64484 1039 1341 0.0 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 25-04-2017 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:2.40.270.10 793 820 8.4E-90 T 25-04-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:2.40.270.10 1060 1242 8.4E-90 T 25-04-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 1.5E-160 T 25-04-2017 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:2.40.50.150 828 937 2.1E-57 T 25-04-2017 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:2.40.50.150 1045 1059 2.1E-57 T 25-04-2017 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 3.8E-27 T 25-04-2017 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.2E-27 T 25-04-2017 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:3.90.1110.10 346 444 4.5E-65 T 25-04-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:3.90.1110.10 153 230 4.5E-65 T 25-04-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:3.90.1100.10 20 151 7.4E-147 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:3.90.1100.10 659 713 7.4E-147 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:3.90.1100.10 445 591 7.4E-147 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:2.30.150.10 592 656 2.5E-31 T 25-04-2017 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Gene3D G3DSA:2.40.50.100 715 792 8.2E-31 T 25-04-2017 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 225 1.8E-7 T 25-04-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01170 67ed2a63e16c4ad51a8493d8c65fb520 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 336 454 7.8E-15 T 25-04-2017 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS17085 217ba5a2cd90d362c5b1daf8a217960a 209 SUPERFAMILY SSF51161 27 199 4.16E-37 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS17085 217ba5a2cd90d362c5b1daf8a217960a 209 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 118 146 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS17085 217ba5a2cd90d362c5b1daf8a217960a 209 Gene3D G3DSA:2.160.10.10 33 201 2.8E-39 T 25-04-2017 A4U88_RS17085 217ba5a2cd90d362c5b1daf8a217960a 209 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 4.9E-10 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 SMART SM00382 49 255 1.8E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 Gene3D G3DSA:3.40.50.300 19 271 1.0E-72 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 Pfam PF00005 ABC transporter 41 197 6.5E-28 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 249 331 2.0E-25 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 249 313 3.8E-21 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS13175 caa515053201ea6d643a18cf1d0ef872 338 SUPERFAMILY SSF52540 50 318 6.32E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19350 8bbddef957b90038455156477b8ee22f 367 Gene3D G3DSA:3.40.50.150 184 317 2.1E-16 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS19350 8bbddef957b90038455156477b8ee22f 367 Pfam PF01728 FtsJ-like methyltransferase 186 278 4.1E-8 T 25-04-2017 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 A4U88_RS19350 8bbddef957b90038455156477b8ee22f 367 Pfam PF03439 Early transcription elongation factor of RNA pol II, NGN section 8 61 3.4E-4 T 25-04-2017 IPR005100 Transcription elongation factor Spt5, NGN domain Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS19350 8bbddef957b90038455156477b8ee22f 367 PIRSF PIRSF028774 1 360 1.0E-187 T 25-04-2017 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 A4U88_RS19350 8bbddef957b90038455156477b8ee22f 367 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 355 85.215 T 25-04-2017 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 A4U88_RS19350 8bbddef957b90038455156477b8ee22f 367 SUPERFAMILY SSF53335 184 295 3.11E-13 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 3.1E-7 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 3.1E-7 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 SMART SM00388 136 196 7.5E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 SUPERFAMILY SSF55874 186 348 2.23E-32 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 Pfam PF00672 HAMP domain 64 131 2.8E-10 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 349 2.0E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 SMART SM00387 242 351 2.5E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 SMART SM00304 83 135 0.0084 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 Gene3D G3DSA:3.30.565.10 209 348 3.4E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 Gene3D G3DSA:1.10.287.130 129 192 5.9E-13 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 SUPERFAMILY SSF47384 120 194 1.45E-12 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS01895 5b3eb9154f158121ac009c180ee3160a 353 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 194 3.4E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 167 371 5.0E-29 T 25-04-2017 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 SUPERFAMILY SSF88697 4 72 3.23E-16 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 396 68.688 T 25-04-2017 IPR023542 rRNA large subunit methyltransferase I GO:0008649 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 Gene3D G3DSA:3.30.750.80 73 180 3.8E-33 T 25-04-2017 A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 Gene3D G3DSA:3.40.50.150 185 395 4.6E-61 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 Gene3D G3DSA:2.30.130.10 4 72 4.4E-27 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 SUPERFAMILY SSF53335 79 392 9.41E-72 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08605 0d2416cd5be5f1959d8f4c027a3ccd91 396 SMART SM00359 3 88 1.3E-14 T 25-04-2017 IPR002478 PUA domain GO:0003723 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 SUPERFAMILY SSF56935 47 644 1.5E-122 T 25-04-2017 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 Gene3D G3DSA:2.170.130.10 49 170 6.3E-40 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 18 644 36.474 T 25-04-2017 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 Pfam PF07715 TonB-dependent Receptor Plug Domain 60 166 2.1E-28 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 627 644 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 23 644 3.2E-236 T 25-04-2017 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 Gene3D G3DSA:2.40.170.20 171 644 3.7E-96 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS23430 fc5868e6075a422aa1aec217dca1c0d1 644 Pfam PF00593 TonB dependent receptor 417 643 1.6E-35 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 SUPERFAMILY SSF53335 10 186 1.25E-30 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 145 169 5.7E-5 T 25-04-2017 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 47 61 5.7E-5 T 25-04-2017 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 115 127 5.7E-5 T 25-04-2017 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 Pfam PF05175 Methyltransferase small domain 43 175 4.9E-16 T 25-04-2017 IPR007848 Methyltransferase small domain GO:0008168 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 10 244 54.278 T 25-04-2017 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 KEGG: 00340+2.1.1.22 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 118 124 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS18680 2731712f62c87e0837a398bd54f3d0b1 244 Gene3D G3DSA:3.40.50.150 31 237 3.6E-44 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 PIRSF PIRSF001263 3 156 7.5E-61 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 TIGRFAM TIGR00673 cynS: cyanase 12 156 3.6E-59 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 SUPERFAMILY SSF55234 88 155 3.14E-29 T 25-04-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 PRINTS PR01693 Cyanase signature 91 105 2.3E-32 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 PRINTS PR01693 Cyanase signature 42 59 2.3E-32 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 PRINTS PR01693 Cyanase signature 22 37 2.3E-32 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 PRINTS PR01693 Cyanase signature 141 151 2.3E-32 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 PRINTS PR01693 Cyanase signature 109 125 2.3E-32 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 Gene3D G3DSA:1.10.260.40 1 87 2.2E-30 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 Gene3D G3DSA:3.30.1160.10 89 156 7.8E-36 T 25-04-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 Pfam PF02560 Cyanate lyase C-terminal domain 88 154 8.3E-32 T 25-04-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 Hamap MF_00535 Cyanate hydratase [cynS]. 1 156 78.636 T 25-04-2017 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 SMART SM01116 83 156 5.6E-47 T 25-04-2017 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS07455 eed109c7b4bfd29acb277e6e8593c135 156 SUPERFAMILY SSF47413 3 85 5.94E-19 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 146 169 0.07 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 100 123 2.0 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 32 54 42.0 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 238 261 0.0096 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 215 236 0.63 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 55 77 8.2 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00369 192 214 17.0 T 25-04-2017 IPR003591 Leucine-rich repeat, typical subtype A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 Gene3D G3DSA:3.80.10.10 112 279 6.5E-45 T 25-04-2017 IPR032675 Leucine-rich repeat domain, L domain-like A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 Gene3D G3DSA:3.80.10.10 14 111 4.8E-22 T 25-04-2017 IPR032675 Leucine-rich repeat domain, L domain-like A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 Pfam PF13855 Leucine rich repeat 55 112 7.5E-11 T 25-04-2017 IPR001611 Leucine-rich repeat GO:0005515 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 Pfam PF13855 Leucine rich repeat 171 228 4.3E-10 T 25-04-2017 IPR001611 Leucine-rich repeat GO:0005515 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 56 73 210.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 215 234 0.45 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 31 50 190.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 146 165 120.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 169 188 260.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 100 119 120.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 192 211 64.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 123 142 50.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SMART SM00364 238 257 30.0 T 25-04-2017 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 Pfam PF13516 Leucine Rich repeat 262 275 0.71 T 25-04-2017 IPR001611 Leucine-rich repeat GO:0005515 A4U88_RS13555 1972de8ec35dcb445253b9dc58d17498 293 SUPERFAMILY SSF52058 14 279 1.36E-58 T 25-04-2017 IPR032675 Leucine-rich repeat domain, L domain-like A4U88_RS20715 c2ef3aef4ea880a354c66b4068b5a8d8 378 Gene3D G3DSA:3.40.50.1980 27 174 3.7E-12 T 25-04-2017 A4U88_RS20715 c2ef3aef4ea880a354c66b4068b5a8d8 378 Gene3D G3DSA:3.40.50.1980 178 357 2.0E-24 T 25-04-2017 A4U88_RS20715 c2ef3aef4ea880a354c66b4068b5a8d8 378 SUPERFAMILY SSF53807 29 348 2.71E-45 T 25-04-2017 A4U88_RS20715 c2ef3aef4ea880a354c66b4068b5a8d8 378 Pfam PF01497 Periplasmic binding protein 70 325 6.5E-21 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 SUPERFAMILY SSF53901 228 422 2.27E-63 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 Gene3D G3DSA:3.40.47.10 274 423 2.8E-54 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 420 1.9E-159 T 25-04-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 PIRSF PIRSF000447 1 424 1.4E-155 T 25-04-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 SUPERFAMILY SSF53901 3 262 8.57E-68 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 257 1.2E-54 T 25-04-2017 IPR014030 Beta-ketoacyl synthase, N-terminal A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 SMART SM00825 Beta-ketoacyl synthase 6 424 2.5E-13 T 25-04-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 Gene3D G3DSA:3.40.47.10 2 270 7.7E-70 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 164 180 - T 25-04-2017 IPR018201 Beta-ketoacyl synthase, active site A4U88_RS08530 0c6c69925f8b7d0f70c9b75cb332cbbd 425 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 378 1.5E-33 T 25-04-2017 IPR014031 Beta-ketoacyl synthase, C-terminal A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 25-04-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Pfam PF01568 Molydopterin dinucleotide binding domain 830 894 4.1E-7 T 25-04-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:2.20.25.90 227 275 4.7E-14 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Pfam PF00384 Molybdopterin oxidoreductase 556 638 1.1E-6 T 25-04-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 SMART SM00926 221 275 1.0E-8 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:3.10.20.30 3 75 5.1E-7 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:3.30.70.20 198 226 5.5E-5 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:3.30.70.20 147 157 5.5E-5 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 660 1.5E-203 T 25-04-2017 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 25-04-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:3.40.50.740 285 340 2.1E-34 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:3.40.50.740 504 691 2.1E-34 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Gene3D G3DSA:2.40.40.20 819 893 6.8E-12 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 1.9E-11 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 275 1.5E-9 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 SUPERFAMILY SSF54862 82 213 1.8E-33 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 SUPERFAMILY SSF50692 819 895 1.49E-13 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 8.4E-15 T 25-04-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 25-04-2017 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 SUPERFAMILY SSF54292 1 77 1.07E-18 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 SUPERFAMILY SSF53706 219 693 2.9E-78 T 25-04-2017 A4U88_RS16845 b9617879fab23b27eee135d3d91925a9 912 SMART SM00929 88 128 1.9E-19 T 25-04-2017 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 Pfam PF03466 LysR substrate binding domain 96 301 2.0E-36 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 Gene3D G3DSA:3.40.190.10 100 184 3.7E-19 T 25-04-2017 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 SUPERFAMILY SSF46785 12 119 4.19E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 Gene3D G3DSA:1.10.10.10 12 93 9.9E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 SUPERFAMILY SSF53850 96 304 4.16E-38 T 25-04-2017 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 1.7E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 1.7E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 1.7E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 Gene3D G3DSA:3.40.190.10 185 267 1.1E-17 T 25-04-2017 A4U88_RS11680 fcaf52ef6c67237df6ae1820de6c027f 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 1.9E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 Pfam PF02311 AraC-like ligand binding domain 20 78 9.0E-6 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 Gene3D G3DSA:1.10.10.60 153 209 8.4E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 224 239 2.9E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 239 255 2.9E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 Pfam PF12833 Helix-turn-helix domain 179 256 5.4E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 SMART SM00342 173 255 2.4E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 SUPERFAMILY SSF51182 13 181 1.18E-12 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 251 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 Gene3D G3DSA:2.60.120.10 15 90 2.7E-10 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 SUPERFAMILY SSF46689 209 256 3.18E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS17045 b2fb30b38a21416950d590a8e3529093 257 Gene3D G3DSA:1.10.10.60 210 256 7.9E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 499 524 - T 25-04-2017 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Pfam PF00378 Enoyl-CoA hydratase/isomerase 24 214 5.6E-42 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 SUPERFAMILY SSF51735 319 500 1.18E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 SUPERFAMILY SSF52096 16 309 4.05E-64 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 11 717 53.412 T 25-04-2017 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Gene3D G3DSA:1.10.1040.10 504 595 1.7E-27 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 SUPERFAMILY SSF48179 625 717 1.36E-26 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Gene3D G3DSA:1.10.1040.10 634 716 2.7E-24 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 629 714 5.4E-7 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 502 595 5.9E-25 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Gene3D G3DSA:3.40.50.720 316 503 1.2E-54 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Gene3D G3DSA:3.90.226.10 9 214 1.0E-62 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 SUPERFAMILY SSF48179 502 604 6.38E-29 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 321 499 6.5E-56 T 25-04-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS17210 80f9bf0015abc1a49d8cbe6809fd125f 721 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 16 717 0.0 T 25-04-2017 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS19110 d991165b05ff0df916afb8baa39e029f 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 5.5E-146 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS19110 d991165b05ff0df916afb8baa39e029f 271 SUPERFAMILY SSF53850 33 271 7.48E-84 T 25-04-2017 A4U88_RS19110 d991165b05ff0df916afb8baa39e029f 271 Pfam PF03180 NLPA lipoprotein 33 271 1.6E-100 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS19110 d991165b05ff0df916afb8baa39e029f 271 Gene3D G3DSA:3.40.190.10 32 162 2.1E-61 T 25-04-2017 A4U88_RS19110 d991165b05ff0df916afb8baa39e029f 271 PIRSF PIRSF002854 1 271 8.9E-106 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS07900 cbba089731d25ad7cf9ce6667a86e949 218 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 2.2E-51 T 25-04-2017 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial A4U88_RS07900 cbba089731d25ad7cf9ce6667a86e949 218 Gene3D G3DSA:1.20.1440.100 16 79 2.6E-18 T 25-04-2017 A4U88_RS07900 cbba089731d25ad7cf9ce6667a86e949 218 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 4.0E-25 T 25-04-2017 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 A4U88_RS07900 cbba089731d25ad7cf9ce6667a86e949 218 SUPERFAMILY SSF56784 1 206 6.75E-29 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS07900 cbba089731d25ad7cf9ce6667a86e949 218 Gene3D G3DSA:3.40.50.1000 80 217 3.7E-44 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS07900 cbba089731d25ad7cf9ce6667a86e949 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 4.6E-39 T 25-04-2017 A4U88_RS06000 4792f285d6424e78fe854fe0d1db943a 379 PIRSF PIRSF000267 2 378 1.1E-129 T 25-04-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 A4U88_RS06000 4792f285d6424e78fe854fe0d1db943a 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 4.7E-109 T 25-04-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 A4U88_RS06000 4792f285d6424e78fe854fe0d1db943a 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 7.6E-190 T 25-04-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 Gene3D G3DSA:3.40.190.10 95 180 9.9E-19 T 25-04-2017 A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 SUPERFAMILY SSF46785 5 90 4.0E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 1.5E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 SUPERFAMILY SSF53850 91 294 2.17E-39 T 25-04-2017 A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 Gene3D G3DSA:3.40.190.10 181 263 2.7E-8 T 25-04-2017 A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 Gene3D G3DSA:1.10.10.10 5 90 1.3E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03705 a20b47c4173a60cdecfe9fe6cc1ef743 297 Pfam PF03466 LysR substrate binding domain 90 294 4.8E-35 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 2.9E-38 T 25-04-2017 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 7.2E-38 T 25-04-2017 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 7.2E-38 T 25-04-2017 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 7.2E-38 T 25-04-2017 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 7.2E-38 T 25-04-2017 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 7.2E-38 T 25-04-2017 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 SUPERFAMILY SSF46548 7 157 5.23E-42 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 2.4E-260 T 25-04-2017 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 Gene3D G3DSA:3.50.50.60 237 400 1.0E-49 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 SUPERFAMILY SSF51971 145 401 3.18E-67 T 25-04-2017 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 2.1E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 Gene3D G3DSA:3.40.50.720 401 471 3.1E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 Gene3D G3DSA:3.40.50.720 150 236 3.1E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21285 4dda3bb5e55c9837872e6757647f9dc4 472 Gene3D G3DSA:1.10.1060.10 5 149 1.2E-47 T 25-04-2017 A4U88_RS02445 bed13fe78386e82a86ed8f1800aa3407 229 Gene3D G3DSA:3.40.50.2000 25 227 4.3E-54 T 25-04-2017 A4U88_RS02445 bed13fe78386e82a86ed8f1800aa3407 229 Pfam PF00982 Glycosyltransferase family 20 24 227 8.2E-43 T 25-04-2017 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 A4U88_RS02445 bed13fe78386e82a86ed8f1800aa3407 229 SUPERFAMILY SSF53756 12 225 2.92E-41 T 25-04-2017 A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 Gene3D G3DSA:1.10.10.10 5 77 1.6E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 5.3E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 5.3E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 Pfam PF07729 FCD domain 96 219 4.3E-18 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 Gene3D G3DSA:1.20.120.530 96 229 4.4E-22 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 SUPERFAMILY SSF46785 2 76 1.18E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 SMART SM00345 13 72 6.6E-25 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 SMART SM00895 96 220 1.2E-15 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 SUPERFAMILY SSF48008 94 228 2.07E-21 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS21165 0510b41c1f90358244c26d5142d36df0 258 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 2.3E-23 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 SUPERFAMILY SSF53271 87 324 4.64E-67 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 22 139 2.3E-49 T 25-04-2017 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 22 332 49.867 T 25-04-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 22 332 8.7E-127 T 25-04-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 Pfam PF14572 Phosphoribosyl synthetase-associated domain 222 331 3.7E-30 T 25-04-2017 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 Gene3D G3DSA:3.40.50.2020 178 304 1.9E-53 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 147 162 - T 25-04-2017 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 SMART SM01400 22 139 5.7E-76 T 25-04-2017 A4U88_RS09690 fc9b2a10edc33f3ec1808eb115b483e6 333 Gene3D G3DSA:3.40.50.2020 19 177 8.4E-73 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 Gene3D G3DSA:3.40.605.10 3 210 3.3E-51 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 SUPERFAMILY SSF53720 2 442 7.2E-112 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 207 214 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 PIRSF PIRSF036492 1 465 9.6E-150 T 25-04-2017 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 Pfam PF00171 Aldehyde dehydrogenase family 11 432 8.0E-88 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 235 246 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS15925 75d6ec3a9c5da4dfcfc6c4401c4f98b1 465 Gene3D G3DSA:3.40.309.10 212 414 7.9E-46 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Gene3D G3DSA:1.10.8.60 778 855 1.6E-30 T 25-04-2017 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Gene3D G3DSA:3.40.50.300 552 777 5.3E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 SUPERFAMILY SSF52540 159 545 7.54E-99 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Gene3D G3DSA:1.10.1780.10 1 147 1.6E-47 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 4.7E-14 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 3.8E-11 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 SMART SM01086 766 855 1.3E-36 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 SUPERFAMILY SSF81923 4 156 6.97E-42 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 845 3.2E-26 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 SMART SM00382 198 343 1.3E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 SMART SM00382 597 733 5.6E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 SUPERFAMILY SSF52540 546 852 1.04E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 25-04-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 2.9E-13 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Gene3D G3DSA:3.40.50.300 160 342 4.6E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 4.2E-57 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 25-04-2017 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 25-04-2017 IPR028299 ClpA/B, conserved site 2 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS03910 e259710d8bbad879871966aa2a77ce12 857 Gene3D G3DSA:1.10.8.60 343 428 4.8E-37 T 25-04-2017 A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 7.6E-27 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 SUPERFAMILY SSF89360 1 95 2.75E-33 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 25-04-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 8.5E-60 T 25-04-2017 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0016226|GO:0051536 A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 Gene3D G3DSA:2.60.300.12 2 96 6.0E-35 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 3.0E-37 T 25-04-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 A4U88_RS18440 d375bc664ffd31ad678a07d4c4f25a20 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 39.316 T 25-04-2017 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0016226|GO:0051536 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 24 219 3.2E-52 T 25-04-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 SUPERFAMILY SSF53613 231 495 2.18E-73 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 503 23.047 T 25-04-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 PIRSF PIRSF017184 15 504 2.5E-146 T 25-04-2017 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 Gene3D G3DSA:3.40.1190.20 241 494 1.7E-89 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 Pfam PF01256 Carbohydrate kinase 258 492 6.6E-71 T 25-04-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 Pfam PF03853 YjeF-related protein N-terminus 40 199 2.9E-42 T 25-04-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 22.915 T 25-04-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 232 496 1.1E-79 T 25-04-2017 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 SUPERFAMILY SSF64153 17 256 1.26E-61 T 25-04-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 438 448 - T 25-04-2017 IPR017953 Carbohydrate kinase, predicted, conserved site A4U88_RS01635 6625bfd1bbbe7d97daf3aef4b0eec9b9 504 Gene3D G3DSA:3.40.50.10260 16 240 2.3E-67 T 25-04-2017 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 513 526 - T 25-04-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 SMART SM00962 339 540 1.3E-124 T 25-04-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 Pfam PF00448 SRP54-type protein, GTPase domain 340 539 5.8E-78 T 25-04-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 SMART SM00963 245 325 2.0E-24 T 25-04-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 SMART SM00382 338 529 3.2E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 Gene3D G3DSA:3.40.50.300 337 539 8.3E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 268 539 3.4E-114 T 25-04-2017 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 Pfam PF02881 SRP54-type protein, helical bundle domain 256 321 1.2E-12 T 25-04-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 268 540 64.763 T 25-04-2017 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 SUPERFAMILY SSF52540 336 539 7.3E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 Gene3D G3DSA:1.20.120.140 230 321 2.2E-35 T 25-04-2017 A4U88_RS00830 3306a5ec3a1d3ce3a583f16db51e2437 543 SUPERFAMILY SSF47364 240 319 9.81E-22 T 25-04-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS13405 c88b3b1888cdf2064374e14561bf489c 186 Gene3D G3DSA:3.30.420.10 5 169 7.2E-10 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS13405 c88b3b1888cdf2064374e14561bf489c 186 SUPERFAMILY SSF53098 2 171 1.75E-17 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS13405 c88b3b1888cdf2064374e14561bf489c 186 Pfam PF16473 3' exoribonuclease, RNase T-like 3 172 6.0E-48 T 25-04-2017 IPR033390 3'-5' exoribonuclease Rv2179c-like domain A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Pfam PF01464 Transglycosylase SLT domain 296 402 6.7E-25 T 25-04-2017 IPR008258 Transglycosylase SLT domain 1 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 309 337 - T 25-04-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Gene3D G3DSA:3.40.190.10 122 226 2.3E-6 T 25-04-2017 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Gene3D G3DSA:3.40.190.10 227 266 1.0E-14 T 25-04-2017 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Gene3D G3DSA:3.40.190.10 42 121 1.0E-14 T 25-04-2017 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 SUPERFAMILY SSF53955 432 447 7.51E-37 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 SUPERFAMILY SSF53955 254 397 7.51E-37 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 SUPERFAMILY SSF53850 45 267 9.96E-38 T 25-04-2017 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Gene3D G3DSA:1.10.530.10 287 458 5.9E-39 T 25-04-2017 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 SMART SM00062 44 268 2.3E-35 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 475 49.252 T 25-04-2017 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 A4U88_RS18575 4221e52158afc692a775aa627e89cdcc 486 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 267 5.2E-32 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS14465 344d01430f01b60941a853958218f615 217 Pfam PF13144 Chaperone for flagella basal body P-ring formation 23 215 5.0E-43 T 25-04-2017 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal A4U88_RS14465 344d01430f01b60941a853958218f615 217 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 82 215 1.7E-39 T 25-04-2017 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal A4U88_RS14465 344d01430f01b60941a853958218f615 217 SMART SM00858 93 155 1.0E-12 T 25-04-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 A4U88_RS09540 42083cc7daebd53aaf5615ed3bb96961 271 SUPERFAMILY SSF53850 33 271 1.34E-76 T 25-04-2017 A4U88_RS09540 42083cc7daebd53aaf5615ed3bb96961 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 16 271 2.2E-123 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS09540 42083cc7daebd53aaf5615ed3bb96961 271 Gene3D G3DSA:3.40.190.10 30 162 4.7E-58 T 25-04-2017 A4U88_RS09540 42083cc7daebd53aaf5615ed3bb96961 271 Pfam PF03180 NLPA lipoprotein 33 271 2.2E-94 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS09540 42083cc7daebd53aaf5615ed3bb96961 271 PIRSF PIRSF002854 1 271 5.6E-98 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 295 1.3E-99 T 25-04-2017 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 294 4.0E-61 T 25-04-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 Gene3D G3DSA:3.20.20.70 151 284 8.4E-60 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 128 5.5E-26 T 25-04-2017 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 SUPERFAMILY SSF51690 130 295 1.92E-58 T 25-04-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 PIRSF PIRSF006250 17 296 2.2E-106 T 25-04-2017 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 SUPERFAMILY SSF54675 14 129 1.31E-32 T 25-04-2017 A4U88_RS03455 ef3a934360fb1993a764010d792bd1c9 296 Gene3D G3DSA:3.90.1170.20 20 150 6.3E-51 T 25-04-2017 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 SUPERFAMILY SSF53901 273 393 1.17E-42 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 392 5.6E-145 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 25-04-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 Pfam PF02803 Thiolase, C-terminal domain 272 393 2.9E-49 T 25-04-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 PIRSF PIRSF000429 1 394 4.9E-133 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 Pfam PF00108 Thiolase, N-terminal domain 6 263 5.8E-105 T 25-04-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 25-04-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 Gene3D G3DSA:3.40.47.10 144 195 3.9E-69 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 Gene3D G3DSA:3.40.47.10 278 393 3.9E-69 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 SUPERFAMILY SSF53901 5 271 3.6E-88 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 Gene3D G3DSA:3.40.47.10 5 125 4.0E-76 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02490 18e9bf2963e33bf6527cb3c2aede2e43 394 Gene3D G3DSA:3.40.47.10 196 277 4.0E-76 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS03430 b5992de722e35c873c417a40201df266 204 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 192 27.772 T 25-04-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 A4U88_RS03430 b5992de722e35c873c417a40201df266 204 SUPERFAMILY SSF52540 1 191 4.77E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03430 b5992de722e35c873c417a40201df266 204 Gene3D G3DSA:3.40.50.300 2 195 2.7E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03430 b5992de722e35c873c417a40201df266 204 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 186 2.7E-63 T 25-04-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 A4U88_RS03430 b5992de722e35c873c417a40201df266 204 Pfam PF01121 Dephospho-CoA kinase 3 179 1.9E-72 T 25-04-2017 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 SUPERFAMILY SSF52518 2 177 1.04E-38 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 SUPERFAMILY SSF52518 356 541 1.83E-43 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 PIRSF PIRSF036565 1 549 4.4E-183 T 25-04-2017 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 175 3.1E-33 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 397 527 5.0E-17 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 Gene3D G3DSA:3.40.50.970 1 179 9.2E-73 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 Gene3D G3DSA:3.40.50.1220 188 338 6.1E-35 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 SUPERFAMILY SSF52467 165 338 1.74E-26 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 Gene3D G3DSA:3.40.50.970 352 540 2.6E-54 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04475 e96000d96592d344d9526d04687cb7df 559 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 200 320 7.5E-20 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Gene3D G3DSA:1.10.10.10 174 237 3.0E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 16 236 1.4E-84 T 25-04-2017 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 236 7.7E-31 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 43 56 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 PIRSF PIRSF000770 3 240 3.1E-42 T 25-04-2017 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 SUPERFAMILY SSF88659 150 238 5.05E-21 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 221 232 1.0E-13 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 206 221 1.0E-13 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 43 56 1.0E-13 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 67 75 1.0E-13 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 PRINTS PR00046 Major sigma-70 factor signature 189 201 1.0E-13 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Pfam PF04542 Sigma-70 region 2 17 88 6.6E-16 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Pfam PF04539 Sigma-70 region 3 97 158 2.7E-16 T 25-04-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 SUPERFAMILY SSF88946 5 88 3.14E-23 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 5 239 62.421 T 25-04-2017 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 206 232 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 SUPERFAMILY SSF88659 89 156 2.7E-16 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Pfam PF04545 Sigma-70, region 4 185 234 9.1E-18 T 25-04-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Gene3D G3DSA:1.10.601.10 11 80 1.8E-14 T 25-04-2017 A4U88_RS14290 b9c38cc1e40041e9a0ee276c47d25b3a 240 Gene3D G3DSA:1.10.10.10 88 135 2.3E-9 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 3 326 1.1E-124 T 25-04-2017 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 SMART SM00846 2 152 1.0E-89 T 25-04-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 PIRSF PIRSF000149 1 335 1.3E-127 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 Gene3D G3DSA:3.40.50.720 1 160 6.0E-71 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2 152 2.8E-58 T 25-04-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 SUPERFAMILY SSF51735 2 151 1.65E-60 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 SUPERFAMILY SSF55347 152 315 5.36E-66 T 25-04-2017 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 314 1.8E-60 T 25-04-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 Gene3D G3DSA:3.30.360.10 161 316 6.2E-70 T 25-04-2017 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 7.8E-34 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 7.8E-34 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 7.8E-34 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 7.8E-34 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS15620 561a61b2e4a9a713f8ca81457398ed03 336 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 7.8E-34 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21160 3e164eba2126e4babd92f8cc9de83da6 432 Pfam PF07690 Major Facilitator Superfamily 16 314 2.0E-49 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS21160 3e164eba2126e4babd92f8cc9de83da6 432 Gene3D G3DSA:1.20.1250.20 217 419 7.7E-19 T 25-04-2017 A4U88_RS21160 3e164eba2126e4babd92f8cc9de83da6 432 Gene3D G3DSA:1.20.1250.20 7 200 7.1E-46 T 25-04-2017 A4U88_RS21160 3e164eba2126e4babd92f8cc9de83da6 432 SUPERFAMILY SSF103473 3 415 8.89E-80 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16840 20187b42b380cd87429c80958c5d9bdc 325 Pfam PF00146 NADH dehydrogenase 17 316 2.3E-119 T 25-04-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16840 20187b42b380cd87429c80958c5d9bdc 325 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 323 23.772 T 25-04-2017 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16840 20187b42b380cd87429c80958c5d9bdc 325 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 25-04-2017 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16840 20187b42b380cd87429c80958c5d9bdc 325 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 25-04-2017 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS04125 f278660a0d3de8e095cf968ed751d991 413 Pfam PF03116 NQR2, RnfD, RnfE family 41 405 2.2E-110 T 25-04-2017 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 A4U88_RS04125 f278660a0d3de8e095cf968ed751d991 413 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 8.3E-198 T 25-04-2017 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 A4U88_RS04125 f278660a0d3de8e095cf968ed751d991 413 PIRSF PIRSF016055 1 413 1.7E-201 T 25-04-2017 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 A4U88_RS04125 f278660a0d3de8e095cf968ed751d991 413 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 37.158 T 25-04-2017 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 A4U88_RS02225 96bf0163bb54f22aef87ce2f81e4eaaf 128 Gene3D G3DSA:3.30.1330.40 4 127 1.6E-45 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS02225 96bf0163bb54f22aef87ce2f81e4eaaf 128 SUPERFAMILY SSF55298 5 127 6.75E-42 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS02225 96bf0163bb54f22aef87ce2f81e4eaaf 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 25-04-2017 IPR019897 RidA, conserved site A4U88_RS02225 96bf0163bb54f22aef87ce2f81e4eaaf 128 Pfam PF01042 Endoribonuclease L-PSP 8 126 2.5E-43 T 25-04-2017 IPR006175 YjgF/YER057c/UK114 family A4U88_RS02225 96bf0163bb54f22aef87ce2f81e4eaaf 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 6.8E-52 T 25-04-2017 IPR006056 RidA family A4U88_RS12765 8db981eb389c9f934ac1ce75b2940256 270 SUPERFAMILY SSF52540 4 248 8.84E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12765 8db981eb389c9f934ac1ce75b2940256 270 SMART SM00382 38 227 7.3E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12765 8db981eb389c9f934ac1ce75b2940256 270 Gene3D G3DSA:3.40.50.300 2 251 9.6E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12765 8db981eb389c9f934ac1ce75b2940256 270 Pfam PF00005 ABC transporter 30 177 7.1E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12765 8db981eb389c9f934ac1ce75b2940256 270 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 Gene3D G3DSA:3.40.50.300 366 562 3.1E-39 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 SUPERFAMILY SSF52540 363 562 4.26E-38 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 SUPERFAMILY SSF90123 24 340 1.7E-25 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 ProSitePatterns PS00211 ABC transporters family signature. 488 502 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 SMART SM00382 390 574 2.5E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 Gene3D G3DSA:1.20.1560.10 25 340 4.0E-16 T 25-04-2017 A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 Pfam PF06472 ABC transporter transmembrane region 2 9 295 1.2E-65 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS19555 76f58b7dd32a6157ea7efa6526ac3409 575 Pfam PF00005 ABC transporter 383 516 3.7E-21 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08640 d8c1d67a24c154c8327eb755d934f3d2 212 Pfam PF00486 Transcriptional regulatory protein, C terminal 28 102 8.2E-10 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS08640 d8c1d67a24c154c8327eb755d934f3d2 212 SUPERFAMILY SSF46894 18 102 1.39E-11 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS08640 d8c1d67a24c154c8327eb755d934f3d2 212 SMART SM00862 25 102 7.3E-9 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS08640 d8c1d67a24c154c8327eb755d934f3d2 212 Gene3D G3DSA:1.10.10.10 24 104 3.4E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 SMART SM00420 8 57 5.7E-8 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 Pfam PF00455 DeoR C terminal sensor domain 77 235 1.2E-47 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 Gene3D G3DSA:1.10.10.10 3 43 1.9E-5 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 Gene3D G3DSA:3.40.50.1360 77 217 1.2E-7 T 25-04-2017 A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 SMART SM01134 75 236 2.4E-66 T 25-04-2017 A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 Pfam PF08220 DeoR-like helix-turn-helix domain 8 56 4.1E-10 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS07995 b01a38e1859fc317ac899bbfa6532eb7 254 SUPERFAMILY SSF100950 76 238 2.43E-27 T 25-04-2017 A4U88_RS11190 48d2b739269a5dc1952c704bfa7f65da 302 Gene3D G3DSA:3.40.190.10 246 302 1.3E-50 T 25-04-2017 A4U88_RS11190 48d2b739269a5dc1952c704bfa7f65da 302 Gene3D G3DSA:3.40.190.10 26 127 1.3E-50 T 25-04-2017 A4U88_RS11190 48d2b739269a5dc1952c704bfa7f65da 302 SUPERFAMILY SSF53850 27 301 5.43E-61 T 25-04-2017 A4U88_RS11190 48d2b739269a5dc1952c704bfa7f65da 302 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 298 5.0E-63 T 25-04-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 A4U88_RS11190 48d2b739269a5dc1952c704bfa7f65da 302 Gene3D G3DSA:3.40.190.120 128 239 4.1E-33 T 25-04-2017 A4U88_RS12170 04523cabc6732ee8dc1993920cef38f8 244 SUPERFAMILY SSF53697 93 230 2.09E-29 T 25-04-2017 A4U88_RS12170 04523cabc6732ee8dc1993920cef38f8 244 Gene3D G3DSA:1.10.10.10 6 60 5.8E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12170 04523cabc6732ee8dc1993920cef38f8 244 Gene3D G3DSA:3.40.50.10490 61 230 3.5E-30 T 25-04-2017 A4U88_RS12170 04523cabc6732ee8dc1993920cef38f8 244 Pfam PF01380 SIS domain 108 223 1.3E-17 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS12170 04523cabc6732ee8dc1993920cef38f8 244 SUPERFAMILY SSF46689 6 72 2.51E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12170 04523cabc6732ee8dc1993920cef38f8 244 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 72 5.0E-17 T 25-04-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 Gene3D G3DSA:1.10.8.100 203 265 2.4E-24 T 25-04-2017 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201 A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 25-04-2017 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 Gene3D G3DSA:3.40.50.150 6 198 2.4E-68 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 SUPERFAMILY SSF53335 17 265 8.83E-78 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 264 3.1E-80 T 25-04-2017 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.61 T 25-04-2017 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 SMART SM00650 25 198 3.5E-82 T 25-04-2017 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 A4U88_RS03180 5f8d538b1e90b936dd050ac9de5bc6b1 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 4.0E-89 T 25-04-2017 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 PRINTS PR01274 Metalloprotease inhibitor signature 103 116 3.8E-11 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 PRINTS PR01274 Metalloprotease inhibitor signature 86 99 3.8E-11 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 PRINTS PR01274 Metalloprotease inhibitor signature 24 40 3.8E-11 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 34 120 1.0E-37 T 25-04-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 Pfam PF02974 Protease inhibitor Inh 29 116 7.5E-19 T 25-04-2017 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 SUPERFAMILY SSF50882 25 122 2.3E-24 T 25-04-2017 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 A4U88_RS00805 5e5e37d196d6dba43480aaeb968df0b4 125 Gene3D G3DSA:2.40.128.10 25 123 2.9E-34 T 25-04-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 A4U88_RS10520 d66f20918fb3fc0b38380d90e94af8f6 335 SUPERFAMILY SSF81345 12 330 3.27E-80 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10520 d66f20918fb3fc0b38380d90e94af8f6 335 Pfam PF01032 FecCD transport family 30 330 5.7E-84 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS10520 d66f20918fb3fc0b38380d90e94af8f6 335 Gene3D G3DSA:1.10.3470.10 14 332 6.4E-98 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10520 d66f20918fb3fc0b38380d90e94af8f6 335 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 7 333 32.808 T 25-04-2017 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 A4U88_RS08735 e5b0fed33b9f66d758942e5c229524e1 156 Pfam PF13239 2TM domain 76 150 1.8E-7 T 25-04-2017 IPR025698 2TM domain A4U88_RS08735 e5b0fed33b9f66d758942e5c229524e1 156 Pfam PF01381 Helix-turn-helix 9 59 6.0E-15 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS08735 e5b0fed33b9f66d758942e5c229524e1 156 SMART SM00530 5 59 2.1E-14 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS08735 e5b0fed33b9f66d758942e5c229524e1 156 SUPERFAMILY SSF47413 4 60 4.56E-15 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS08735 e5b0fed33b9f66d758942e5c229524e1 156 Gene3D G3DSA:1.10.260.40 5 81 1.7E-18 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS13615 6d6ee9609b80468d9d30a755226714c3 63 Pfam PF09723 Zinc ribbon domain 1 41 1.5E-17 T 25-04-2017 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain A4U88_RS13615 6d6ee9609b80468d9d30a755226714c3 63 SMART SM00834 1 42 1.1E-20 T 25-04-2017 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain A4U88_RS13615 6d6ee9609b80468d9d30a755226714c3 63 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 2.7E-23 T 25-04-2017 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 Gene3D G3DSA:4.10.430.10 92 135 6.3E-25 T 25-04-2017 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 SUPERFAMILY SSF81273 2 58 4.32E-18 T 25-04-2017 A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 Gene3D G3DSA:1.10.287.1050 1 58 1.0E-32 T 25-04-2017 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 PIRSF PIRSF002096 1 135 2.6E-56 T 25-04-2017 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 Pfam PF00816 H-NS histone family 32 127 6.3E-19 T 25-04-2017 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 SUPERFAMILY SSF81273 93 135 1.14E-11 T 25-04-2017 A4U88_RS13215 ba7eb826b81b64d054ad87e9e6c323fe 135 SMART SM00528 87 135 5.0E-23 T 25-04-2017 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 A4U88_RS08900 49fc52081bddc6fb9f0c78475da7c0f2 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 25-04-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 A4U88_RS08900 49fc52081bddc6fb9f0c78475da7c0f2 182 PIRSF PIRSF000847 1 180 4.1E-44 T 25-04-2017 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 A4U88_RS08900 49fc52081bddc6fb9f0c78475da7c0f2 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 33.007 T 25-04-2017 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 A4U88_RS08900 49fc52081bddc6fb9f0c78475da7c0f2 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 1.1E-17 T 25-04-2017 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 A4U88_RS08900 49fc52081bddc6fb9f0c78475da7c0f2 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 1.6E-61 T 25-04-2017 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 A4U88_RS19545 6bcc71bc4d25d03ca90e0d1af0a89412 215 Pfam PF01323 DSBA-like thioredoxin domain 9 186 1.8E-7 T 25-04-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 A4U88_RS19545 6bcc71bc4d25d03ca90e0d1af0a89412 215 SUPERFAMILY SSF52833 4 210 1.61E-30 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19545 6bcc71bc4d25d03ca90e0d1af0a89412 215 Gene3D G3DSA:1.10.472.60 48 169 1.5E-35 T 25-04-2017 IPR023169 UPF0413, central domain A4U88_RS08515 2f949f153819da1ad6309a2e956848af 186 Gene3D G3DSA:3.40.50.10610 13 182 8.0E-17 T 25-04-2017 IPR005586 ABC-type transport auxiliary lipoprotein component A4U88_RS08515 2f949f153819da1ad6309a2e956848af 186 SUPERFAMILY SSF159594 23 183 6.54E-30 T 25-04-2017 A4U88_RS08515 2f949f153819da1ad6309a2e956848af 186 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 25 180 1.7E-41 T 25-04-2017 IPR005586 ABC-type transport auxiliary lipoprotein component A4U88_RS14505 276c402ef30cd50896b519ef8a488776 132 Gene3D G3DSA:3.40.50.1010 4 131 1.9E-34 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS14505 276c402ef30cd50896b519ef8a488776 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 130 12.442 T 25-04-2017 IPR022907 VapC family GO:0004540 A4U88_RS14505 276c402ef30cd50896b519ef8a488776 132 Pfam PF01850 PIN domain 5 125 6.0E-17 T 25-04-2017 IPR002716 PIN domain A4U88_RS14505 276c402ef30cd50896b519ef8a488776 132 SUPERFAMILY SSF88723 2 131 2.24E-34 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS03540 99fd25358e7ba4d974b9e00cef92dd21 396 Gene3D G3DSA:3.50.50.60 263 332 9.1E-39 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03540 99fd25358e7ba4d974b9e00cef92dd21 396 Gene3D G3DSA:3.50.50.60 1 122 9.1E-39 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03540 99fd25358e7ba4d974b9e00cef92dd21 396 SUPERFAMILY SSF51905 120 262 5.74E-17 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03540 99fd25358e7ba4d974b9e00cef92dd21 396 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 143 1.6E-7 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03540 99fd25358e7ba4d974b9e00cef92dd21 396 SUPERFAMILY SSF51905 4 114 2.92E-20 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03540 99fd25358e7ba4d974b9e00cef92dd21 396 SUPERFAMILY SSF51905 256 331 2.92E-20 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 Gene3D G3DSA:3.40.30.10 4 110 4.6E-28 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 SUPERFAMILY SSF52833 3 112 7.08E-31 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 Pfam PF14561 Tetratricopeptide repeat 195 284 1.2E-30 T 25-04-2017 A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 Pfam PF00085 Thioredoxin 6 107 3.7E-19 T 25-04-2017 IPR013766 Thioredoxin domain GO:0045454 A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 Gene3D G3DSA:1.25.40.10 111 196 6.9E-35 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 Pfam PF14559 Tetratricopeptide repeat 124 190 2.2E-18 T 25-04-2017 A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 SUPERFAMILY SSF48452 114 240 1.55E-6 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS05390 10e4bc70ca4e4c2fcda8e1498c428b77 284 Gene3D G3DSA:1.25.40.10 197 284 5.7E-34 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00730 0fc10633ec1bcb58ae41a0e4b441e81b 206 Pfam PF01810 LysE type translocator 14 202 6.2E-43 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS00730 0fc10633ec1bcb58ae41a0e4b441e81b 206 PIRSF PIRSF006324 1 205 1.5E-54 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS03065 455626bc2b4164fbdf954020693d49f5 299 SUPERFAMILY SSF53850 92 290 5.12E-25 T 25-04-2017 A4U88_RS03065 455626bc2b4164fbdf954020693d49f5 299 SUPERFAMILY SSF46785 3 87 5.44E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03065 455626bc2b4164fbdf954020693d49f5 299 Pfam PF03466 LysR substrate binding domain 121 288 4.9E-10 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS03065 455626bc2b4164fbdf954020693d49f5 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.0E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03065 455626bc2b4164fbdf954020693d49f5 299 Gene3D G3DSA:1.10.10.10 5 85 1.2E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03065 455626bc2b4164fbdf954020693d49f5 299 Gene3D G3DSA:3.40.190.10 123 230 1.5E-7 T 25-04-2017 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 Pfam PF00455 DeoR C terminal sensor domain 74 232 4.1E-52 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 SMART SM00420 6 58 8.9E-18 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 SMART SM01134 72 233 1.2E-72 T 25-04-2017 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 SUPERFAMILY SSF46785 4 59 1.7E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 Gene3D G3DSA:3.40.50.1360 75 214 1.1E-16 T 25-04-2017 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 SUPERFAMILY SSF100950 73 233 4.67E-35 T 25-04-2017 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 Pfam PF08220 DeoR-like helix-turn-helix domain 6 58 4.5E-17 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS18200 c56bfaa4d01747e5f540736022a09bd8 257 Gene3D G3DSA:1.10.10.10 1 59 1.7E-10 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18300 794f755b5fed77bb11146419213a9163 124 Pfam PF01638 HxlR-like helix-turn-helix 21 106 4.4E-21 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS18300 794f755b5fed77bb11146419213a9163 124 Gene3D G3DSA:1.10.10.10 7 118 2.0E-35 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18300 794f755b5fed77bb11146419213a9163 124 SUPERFAMILY SSF46785 8 115 2.53E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 Pfam PF02885 Glycosyl transferase family, helical bundle domain 18 76 3.7E-13 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 Gene3D G3DSA:3.40.1030.10 89 350 3.9E-82 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 Pfam PF00591 Glycosyl transferase family, a/b domain 89 339 1.7E-68 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 SUPERFAMILY SSF47648 26 81 1.18E-12 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 16 348 30.026 T 25-04-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 SUPERFAMILY SSF52418 87 351 2.62E-73 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 25 347 1.2E-91 T 25-04-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 A4U88_RS09585 232c18968c8589f39189ce3bd167c10d 362 Gene3D G3DSA:1.20.970.10 16 78 4.2E-16 T 25-04-2017 A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 SUPERFAMILY SSF53850 89 296 3.37E-41 T 25-04-2017 A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 Gene3D G3DSA:1.10.10.10 1 86 6.2E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 Gene3D G3DSA:3.40.190.10 177 262 2.1E-18 T 25-04-2017 A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.1E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 Pfam PF03466 LysR substrate binding domain 88 294 6.4E-42 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 SUPERFAMILY SSF46785 1 112 1.32E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18885 5dfd46cb228912e07123a3f1c03e492b 301 Gene3D G3DSA:3.40.190.10 92 176 4.6E-21 T 25-04-2017 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 108 145 - T 25-04-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 Pfam PF07687 Peptidase dimerisation domain 176 285 8.6E-25 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 25-04-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 Gene3D G3DSA:3.30.70.360 188 288 2.2E-26 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 Gene3D G3DSA:3.40.630.10 5 187 2.2E-61 T 25-04-2017 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 Gene3D G3DSA:3.40.630.10 321 380 2.2E-61 T 25-04-2017 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 380 65.303 T 25-04-2017 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 SUPERFAMILY SSF53187 4 178 2.51E-58 T 25-04-2017 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 SUPERFAMILY SSF53187 303 379 2.51E-58 T 25-04-2017 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 SUPERFAMILY SSF55031 179 294 4.78E-22 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 8 375 1.8E-154 T 25-04-2017 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 A4U88_RS23495 b79b68c75f7e5cb7038a02ad35ae0f7e 381 Pfam PF01546 Peptidase family M20/M25/M40 74 375 2.3E-35 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 PIRSF PIRSF004640 1 364 4.5E-147 T 25-04-2017 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 Gene3D G3DSA:3.20.20.70 31 132 4.1E-9 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 352 9.3E-125 T 25-04-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 358 34.749 T 25-04-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 SUPERFAMILY SSF56014 266 354 1.79E-10 T 25-04-2017 A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 SUPERFAMILY SSF51604 23 139 1.98E-9 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS18385 31594dce5566530e3b03b6a56484f736 373 Pfam PF04551 GcpE protein 14 354 3.1E-131 T 25-04-2017 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PRINTS PR00067 Catalase signature 123 141 4.9E-71 T 25-04-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PRINTS PR00067 Catalase signature 320 346 4.9E-71 T 25-04-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PRINTS PR00067 Catalase signature 288 315 4.9E-71 T 25-04-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PRINTS PR00067 Catalase signature 20 43 4.9E-71 T 25-04-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PRINTS PR00067 Catalase signature 83 101 4.9E-71 T 25-04-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PRINTS PR00067 Catalase signature 104 121 4.9E-71 T 25-04-2017 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 SMART SM01060 7 391 1.3E-280 T 25-04-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 333 341 - T 25-04-2017 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 PIRSF PIRSF038928 1 478 3.6E-219 T 25-04-2017 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 Pfam PF00199 Catalase 7 387 1.1E-186 T 25-04-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 ProSitePatterns PS00438 Catalase proximal active site signature. 43 59 - T 25-04-2017 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 Gene3D G3DSA:2.40.180.10 2 355 2.9E-173 T 25-04-2017 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 SUPERFAMILY SSF56634 4 477 1.83E-210 T 25-04-2017 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS16730 3c0a439ffcf4f1bd4f241c49927d5831 478 Pfam PF06628 Catalase-related immune-responsive 414 475 2.2E-22 T 25-04-2017 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 Gene3D G3DSA:3.40.1140.10 1 98 7.8E-32 T 25-04-2017 A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 Gene3D G3DSA:3.40.1140.10 257 370 7.8E-32 T 25-04-2017 A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 Pfam PF13476 AAA domain 6 198 3.9E-15 T 25-04-2017 A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 253 335 2.3E-16 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 SUPERFAMILY SSF52540 1 74 3.26E-26 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 SUPERFAMILY SSF52540 233 355 3.26E-26 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22530 19e3db0fd9e765b11686fd1c30e3c3b7 438 SMART SM00382 22 350 7.0E-4 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 Gene3D G3DSA:1.10.1660.10 57 111 3.5E-8 T 25-04-2017 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 1.8E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 1.8E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 1.8E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 Gene3D G3DSA:1.10.1660.10 2 56 1.6E-24 T 25-04-2017 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 Gene3D G3DSA:1.10.490.50 151 224 1.2E-4 T 25-04-2017 IPR012925 TipAS antibiotic-recognition domain A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 Pfam PF07739 TipAS antibiotic-recognition domain 151 229 1.9E-8 T 25-04-2017 IPR012925 TipAS antibiotic-recognition domain A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 ProSitePatterns PS00552 MerR-type HTH domain signature. 6 28 - T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 SMART SM00422 3 72 4.9E-29 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 Pfam PF13411 MerR HTH family regulatory protein 4 70 5.8E-17 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS06510 e6160405a8452f0c1a26ce4fc4ad6224 341 SUPERFAMILY SSF46955 3 112 4.76E-28 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 SUPERFAMILY SSF46689 211 253 4.3E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 Gene3D G3DSA:1.10.10.60 151 206 1.7E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 206 249 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 Pfam PF12833 Helix-turn-helix domain 177 253 2.6E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 SUPERFAMILY SSF51182 12 201 1.96E-16 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 Pfam PF02311 AraC-like ligand binding domain 21 136 2.5E-9 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 Gene3D G3DSA:1.10.10.60 212 252 3.3E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 SMART SM00342 171 253 1.6E-17 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 Gene3D G3DSA:2.60.120.10 10 84 2.2E-10 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 222 237 5.4E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS21510 8beb364baec00cd75fe8589e4cc8f72c 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 237 253 5.4E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 SUPERFAMILY SSF52467 196 360 1.96E-56 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 SUPERFAMILY SSF52518 367 562 5.36E-65 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 202 336 1.9E-43 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 Gene3D G3DSA:3.40.50.970 354 555 1.2E-69 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 SUPERFAMILY SSF52518 12 190 3.32E-60 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 Gene3D G3DSA:3.40.50.1220 196 353 7.6E-62 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 429 448 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 14 563 2.8E-205 T 25-04-2017 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 14 180 1.5E-58 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 Gene3D G3DSA:3.40.50.970 12 189 2.4E-72 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03230 f901de4e8a9ed0eb47548db4cc6749bd 564 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 392 540 5.4E-50 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS11520 4949329e6eef5bcfb73082751581210a 190 Gene3D G3DSA:3.40.50.850 1 187 1.7E-43 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS11520 4949329e6eef5bcfb73082751581210a 190 SUPERFAMILY SSF52499 2 188 2.09E-43 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS11520 4949329e6eef5bcfb73082751581210a 190 Pfam PF00857 Isochorismatase family 3 186 2.0E-31 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS18605 3d7883780204c3a1df813a503c86308a 282 Pfam PF01380 SIS domain 128 257 4.0E-29 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS18605 3d7883780204c3a1df813a503c86308a 282 SUPERFAMILY SSF53697 101 279 1.75E-38 T 25-04-2017 A4U88_RS18605 3d7883780204c3a1df813a503c86308a 282 SUPERFAMILY SSF46689 1 77 1.77E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS18605 3d7883780204c3a1df813a503c86308a 282 Gene3D G3DSA:1.10.10.10 1 77 2.2E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18605 3d7883780204c3a1df813a503c86308a 282 Gene3D G3DSA:3.40.50.10490 103 270 2.5E-38 T 25-04-2017 A4U88_RS18605 3d7883780204c3a1df813a503c86308a 282 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 7.7E-26 T 25-04-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 621 639 2.2E-33 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 695 713 2.2E-33 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 666 684 2.2E-33 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 728 742 2.2E-33 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Gene3D G3DSA:3.40.50.300 572 800 9.1E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 SUPERFAMILY SSF81923 17 141 2.16E-15 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 SUPERFAMILY SSF52540 566 862 2.25E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Gene3D G3DSA:1.10.1780.10 18 143 8.2E-17 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Gene3D G3DSA:1.10.8.60 367 450 4.0E-26 T 25-04-2017 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Gene3D G3DSA:3.40.50.300 184 365 1.5E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 317 329 - T 25-04-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Gene3D G3DSA:1.10.8.60 801 879 8.0E-11 T 25-04-2017 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 SMART SM01086 789 881 4.7E-12 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 226 359 1.3E-9 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 SMART SM00382 221 366 1.7E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 SMART SM00382 617 760 2.4E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 27 75 7.7E-4 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 SUPERFAMILY SSF52540 183 517 6.24E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 789 864 2.8E-14 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 14 873 0.0 T 25-04-2017 IPR017729 Type VI secretion system, ATPase ClpV1 A4U88_RS14750 29346d6da9adccd3e333ac117e53d40a 885 Pfam PF07724 AAA domain (Cdc48 subfamily) 616 781 9.4E-38 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS20185 987376ff59299e68905b9c74a51b57e0 589 SUPERFAMILY SSF161098 300 586 7.06E-38 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS20185 987376ff59299e68905b9c74a51b57e0 589 SUPERFAMILY SSF161098 5 282 2.35E-47 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS20185 987376ff59299e68905b9c74a51b57e0 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 275 9.9E-12 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS20185 987376ff59299e68905b9c74a51b57e0 589 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 381 577 2.2E-11 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS20185 987376ff59299e68905b9c74a51b57e0 589 Gene3D G3DSA:1.10.3720.10 3 275 1.9E-41 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS20185 987376ff59299e68905b9c74a51b57e0 589 Gene3D G3DSA:1.10.3720.10 299 575 5.4E-33 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22770 01da81c2587affd94543f56d40da0003 94 Gene3D G3DSA:3.30.1660.10 18 91 6.0E-24 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS22770 01da81c2587affd94543f56d40da0003 94 Pfam PF07338 Protein of unknown function (DUF1471) 38 91 1.0E-18 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS22770 01da81c2587affd94543f56d40da0003 94 SUPERFAMILY SSF159871 4 91 3.14E-23 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS04185 05b29a88f2f95577883bdc294de7e4ed 152 SUPERFAMILY SSF53271 4 143 9.83E-33 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS04185 05b29a88f2f95577883bdc294de7e4ed 152 Pfam PF00156 Phosphoribosyl transferase domain 10 145 1.8E-18 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS04185 05b29a88f2f95577883bdc294de7e4ed 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.506 T 25-04-2017 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 A4U88_RS04185 05b29a88f2f95577883bdc294de7e4ed 152 Gene3D G3DSA:3.40.50.2020 1 146 1.1E-44 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 Pfam PF00005 ABC transporter 24 181 1.1E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 Gene3D G3DSA:3.40.50.300 2 255 1.9E-71 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 SUPERFAMILY SSF52540 3 253 6.95E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 SMART SM00382 32 231 4.0E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 1.2E-25 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS00445 6300705d6003292b58dcd5bfe4a8e79e 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 2.4E-18 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Gene3D G3DSA:3.40.50.150 232 428 8.0E-59 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Gene3D G3DSA:3.30.70.1170 173 230 3.1E-28 T 25-04-2017 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 SUPERFAMILY SSF48013 6 149 3.43E-36 T 25-04-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 428 2.4E-175 T 25-04-2017 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 69.872 T 25-04-2017 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 25-04-2017 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 1.8E-31 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 1.8E-31 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 1.8E-31 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 1.8E-31 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 1.8E-31 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Gene3D G3DSA:1.10.287.730 148 172 3.5E-15 T 25-04-2017 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 426 1.4E-75 T 25-04-2017 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Gene3D G3DSA:1.10.940.10 3 147 6.8E-46 T 25-04-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 Pfam PF01029 NusB family 7 127 7.0E-24 T 25-04-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 A4U88_RS22180 a00258363f6320ab88886b88ae47fc2e 429 SUPERFAMILY SSF53335 141 428 1.36E-79 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS16965 f1283e94ff4a9e6a572ea105e8a2a458 123 Gene3D G3DSA:3.30.1130.10 6 122 5.5E-35 T 25-04-2017 A4U88_RS16965 f1283e94ff4a9e6a572ea105e8a2a458 123 TIGRFAM TIGR00526 folB_dom: FolB domain 9 122 3.3E-36 T 25-04-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS16965 f1283e94ff4a9e6a572ea105e8a2a458 123 SMART SM00905 10 120 4.8E-32 T 25-04-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS16965 f1283e94ff4a9e6a572ea105e8a2a458 123 Pfam PF02152 Dihydroneopterin aldolase 10 118 3.1E-24 T 25-04-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS16965 f1283e94ff4a9e6a572ea105e8a2a458 123 SUPERFAMILY SSF55620 9 121 1.78E-28 T 25-04-2017 A4U88_RS22400 9d76871577727e06f00585662e1d3464 240 Pfam PF13309 HTH domain 171 228 1.4E-18 T 25-04-2017 A4U88_RS22400 9d76871577727e06f00585662e1d3464 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 153 4.0E-62 T 25-04-2017 IPR013559 YheO-like A4U88_RS22400 9d76871577727e06f00585662e1d3464 240 Pfam PF08348 YheO-like PAS domain 29 137 9.1E-36 T 25-04-2017 IPR013559 YheO-like A4U88_RS16445 eb7b0f7be388370a0db0aea6ae6a80db 398 Gene3D G3DSA:1.20.1250.20 12 195 2.1E-34 T 25-04-2017 A4U88_RS16445 eb7b0f7be388370a0db0aea6ae6a80db 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 390 4.0E-140 T 25-04-2017 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 A4U88_RS16445 eb7b0f7be388370a0db0aea6ae6a80db 398 SUPERFAMILY SSF103473 7 396 5.75E-70 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16445 eb7b0f7be388370a0db0aea6ae6a80db 398 Gene3D G3DSA:1.20.1250.20 210 396 2.6E-11 T 25-04-2017 A4U88_RS16445 eb7b0f7be388370a0db0aea6ae6a80db 398 Pfam PF07690 Major Facilitator Superfamily 16 358 3.7E-47 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19260 91973fddf5bf0c4d99045710c848d624 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 5.7E-81 T 25-04-2017 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 A4U88_RS19260 91973fddf5bf0c4d99045710c848d624 185 Pfam PF01765 Ribosome recycling factor 20 183 1.4E-63 T 25-04-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 A4U88_RS19260 91973fddf5bf0c4d99045710c848d624 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 28.108 T 25-04-2017 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 A4U88_RS19260 91973fddf5bf0c4d99045710c848d624 185 Gene3D G3DSA:1.10.132.20 67 184 1.3E-44 T 25-04-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 A4U88_RS19260 91973fddf5bf0c4d99045710c848d624 185 SUPERFAMILY SSF55194 2 184 1.03E-71 T 25-04-2017 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 A4U88_RS23470 48e974e8d2b9d59927bd88e33c7c33ba 108 Pfam PF05534 HicB family 58 102 8.2E-13 T 25-04-2017 IPR008651 Uncharacterised protein family HicB A4U88_RS23470 48e974e8d2b9d59927bd88e33c7c33ba 108 SUPERFAMILY SSF143100 6 67 1.14E-8 T 25-04-2017 A4U88_RS23470 48e974e8d2b9d59927bd88e33c7c33ba 108 SUPERFAMILY SSF47598 72 107 8.15E-5 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS09480 e82c7af3ad5d178ecc98c812b530f5b4 399 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 393 56.368 T 25-04-2017 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS09480 e82c7af3ad5d178ecc98c812b530f5b4 399 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 80 1.4E-39 T 25-04-2017 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS09480 e82c7af3ad5d178ecc98c812b530f5b4 399 Pfam PF07055 Enoyl reductase FAD binding domain 324 386 2.1E-29 T 25-04-2017 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS09480 e82c7af3ad5d178ecc98c812b530f5b4 399 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 7.9E-116 T 25-04-2017 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 Gene3D G3DSA:1.10.287.1040 13 77 1.8E-28 T 25-04-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 2.0E-11 T 25-04-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 Pfam PF02609 Exonuclease VII small subunit 17 68 3.7E-21 T 25-04-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 16 71 2.2E-24 T 25-04-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 PIRSF PIRSF006488 5 85 3.4E-24 T 25-04-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 16 76 16.775 T 25-04-2017 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS04860 38ad2869207ee5bdd308740a11e98262 87 SUPERFAMILY SSF116842 12 78 1.44E-21 T 25-04-2017 A4U88_RS00875 4b6b59a0face048bf573876fb986f052 427 Pfam PF02653 Branched-chain amino acid transport system / permease component 111 397 4.4E-58 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS00875 4b6b59a0face048bf573876fb986f052 427 Pfam PF11862 Domain of unknown function (DUF3382) 4 102 2.0E-26 T 25-04-2017 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal A4U88_RS01610 f69757c91ce6ed101f9cd5a2fe4ea877 181 SUPERFAMILY SSF53098 4 180 4.75E-48 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS01610 f69757c91ce6ed101f9cd5a2fe4ea877 181 Pfam PF00929 Exonuclease 9 170 2.8E-36 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS01610 f69757c91ce6ed101f9cd5a2fe4ea877 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 44.679 T 25-04-2017 IPR022894 Oligoribonuclease GO:0016788 A4U88_RS01610 f69757c91ce6ed101f9cd5a2fe4ea877 181 SMART SM00479 7 180 4.0E-22 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS01610 f69757c91ce6ed101f9cd5a2fe4ea877 181 Gene3D G3DSA:3.30.420.10 4 180 4.7E-71 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 29 157 6.4E-14 T 25-04-2017 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 120 140 7.1E-48 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 236 253 7.1E-48 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 551 567 7.1E-48 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 184 205 7.1E-48 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 568 585 7.1E-48 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 PRINTS PR00738 Glycosyl hydrolase family 20 signature 155 172 7.1E-48 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 Gene3D G3DSA:3.30.379.10 9 157 1.2E-23 T 25-04-2017 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 SUPERFAMILY SSF51445 520 599 9.49E-109 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 SUPERFAMILY SSF51445 161 418 9.49E-109 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 SUPERFAMILY SSF55545 30 160 3.79E-24 T 25-04-2017 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 161 586 3.5E-102 T 25-04-2017 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 Gene3D G3DSA:3.20.20.80 534 610 3.7E-137 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 Gene3D G3DSA:3.20.20.80 474 475 3.7E-137 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS02200 3daad168baf4ac0471b34329e1630449 796 Gene3D G3DSA:3.20.20.80 159 418 3.7E-137 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 Gene3D G3DSA:3.40.720.10 38 505 7.2E-159 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 Pfam PF00245 Alkaline phosphatase 60 501 3.3E-124 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 PRINTS PR00113 Alkaline phosphatase signature 225 235 5.2E-43 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 PRINTS PR00113 Alkaline phosphatase signature 116 131 5.2E-43 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 PRINTS PR00113 Alkaline phosphatase signature 316 345 5.2E-43 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 PRINTS PR00113 Alkaline phosphatase signature 163 183 5.2E-43 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 PRINTS PR00113 Alkaline phosphatase signature 60 80 5.2E-43 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 SUPERFAMILY SSF53649 39 504 2.33E-149 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS20955 3017e2385e450f744edca62e0bcd427c 510 SMART SM00098 61 504 8.6E-155 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 SUPERFAMILY SSF52021 3 142 3.4E-57 T 25-04-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.2E-11 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.2E-11 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.2E-11 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.395 T 25-04-2017 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.1E-5 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.1E-5 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.1E-5 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 Gene3D G3DSA:3.40.50.880 154 377 3.1E-84 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 1.8E-52 T 25-04-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 SMART SM01097 3 133 4.7E-92 T 25-04-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 2.3E-39 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 2.3E-39 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 2.3E-39 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 2.3E-39 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 2.3E-39 T 25-04-2017 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 5.3E-151 T 25-04-2017 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 Pfam PF00117 Glutamine amidotransferase class-I 198 372 1.6E-49 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 SUPERFAMILY SSF52317 153 377 6.11E-65 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS03125 9e5903160ed96e689073012c8a9e75b5 382 Gene3D G3DSA:3.50.30.20 4 144 3.3E-63 T 25-04-2017 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 SUPERFAMILY SSF102114 5 313 4.58E-95 T 25-04-2017 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.436 T 25-04-2017 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 Pfam PF04055 Radical SAM superfamily 50 202 3.8E-18 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 PIRSF PIRSF001619 1 319 6.7E-139 T 25-04-2017 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 Gene3D G3DSA:3.20.20.70 7 314 5.6E-107 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 2.4E-20 T 25-04-2017 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 7.7E-125 T 25-04-2017 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 SMART SM00876 220 312 1.5E-49 T 25-04-2017 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS06260 b2a66a3a00c43976c1127f5ac0e88236 345 SMART SM00729 43 255 6.7E-40 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 SUPERFAMILY SSF53218 180 326 1.7E-44 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Gene3D G3DSA:2.40.340.10 331 404 3.3E-33 T 25-04-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 289 - T 25-04-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Gene3D G3DSA:3.40.980.10 166 329 1.1E-65 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 SMART SM00852 183 320 6.9E-45 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Pfam PF03454 MoeA C-terminal region (domain IV) 334 406 4.7E-18 T 25-04-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Pfam PF00994 Probable molybdopterin binding domain 183 319 2.1E-26 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 SUPERFAMILY SSF63867 330 410 6.28E-24 T 25-04-2017 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 170 9.4E-38 T 25-04-2017 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 179 316 1.9E-34 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Gene3D G3DSA:3.90.105.10 134 165 2.8E-21 T 25-04-2017 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 Gene3D G3DSA:2.170.190.11 53 133 1.5E-33 T 25-04-2017 A4U88_RS07490 bb5ea7108a40cd3f0dd460ad3acad763 412 SUPERFAMILY SSF63882 6 179 4.32E-57 T 25-04-2017 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS20685 0cf455f7f37d45c397f9ca91c6bfe5c5 229 Pfam PF08448 PAS fold 20 123 2.3E-5 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS20685 0cf455f7f37d45c397f9ca91c6bfe5c5 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 203 1.8E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS20685 0cf455f7f37d45c397f9ca91c6bfe5c5 229 Gene3D G3DSA:1.10.10.10 152 208 8.7E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20685 0cf455f7f37d45c397f9ca91c6bfe5c5 229 SMART SM00421 151 208 3.1E-4 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS20685 0cf455f7f37d45c397f9ca91c6bfe5c5 229 SUPERFAMILY SSF46894 145 209 3.4E-13 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS08705 9c90edba78d4bcfea8c35ea5ad33fd29 266 SMART SM00477 46 246 8.5E-78 T 25-04-2017 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 A4U88_RS08705 9c90edba78d4bcfea8c35ea5ad33fd29 266 Gene3D G3DSA:3.40.570.10 28 256 2.4E-53 T 25-04-2017 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 A4U88_RS08705 9c90edba78d4bcfea8c35ea5ad33fd29 266 Pfam PF01223 DNA/RNA non-specific endonuclease 28 245 8.1E-46 T 25-04-2017 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 A4U88_RS08705 9c90edba78d4bcfea8c35ea5ad33fd29 266 SUPERFAMILY SSF54060 28 265 4.83E-59 T 25-04-2017 A4U88_RS08705 9c90edba78d4bcfea8c35ea5ad33fd29 266 ProSitePatterns PS01070 DNA/RNA non-specific endonucleases active site. 107 115 - T 25-04-2017 IPR018524 DNA/RNA non-specific endonuclease, active site GO:0003676|GO:0016787|GO:0046872 A4U88_RS08705 9c90edba78d4bcfea8c35ea5ad33fd29 266 SMART SM00892 45 246 1.5E-43 T 25-04-2017 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 A4U88_RS08455 765ec3976b51bc5611271b5b8354ba75 257 Gene3D G3DSA:3.40.50.300 12 212 8.3E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08455 765ec3976b51bc5611271b5b8354ba75 257 SMART SM00382 37 211 7.8E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08455 765ec3976b51bc5611271b5b8354ba75 257 SUPERFAMILY SSF52540 13 213 1.02E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08455 765ec3976b51bc5611271b5b8354ba75 257 Pfam PF00005 ABC transporter 28 161 8.6E-31 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08455 765ec3976b51bc5611271b5b8354ba75 257 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06790 30fe7c46714f36080f6ce16df53794be 277 SUPERFAMILY SSF52540 24 263 2.37E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06790 30fe7c46714f36080f6ce16df53794be 277 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 24 270 4.8E-90 T 25-04-2017 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 A4U88_RS06790 30fe7c46714f36080f6ce16df53794be 277 Pfam PF00005 ABC transporter 41 202 1.1E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06790 30fe7c46714f36080f6ce16df53794be 277 SMART SM00382 50 274 1.3E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06790 30fe7c46714f36080f6ce16df53794be 277 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06790 30fe7c46714f36080f6ce16df53794be 277 Gene3D G3DSA:3.40.50.300 23 265 1.8E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16115 95239a120d9b16fa1dc1a338ae9f3ea7 356 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 3 345 4.4E-82 T 25-04-2017 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 A4U88_RS16115 95239a120d9b16fa1dc1a338ae9f3ea7 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 345 7.8E-53 T 25-04-2017 IPR005495 Permease LptG/LptF-related GO:0016021 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 Pfam PF00672 HAMP domain 165 234 4.6E-12 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 160 1.2E-10 T 25-04-2017 IPR032404 Two-component sensor protein CpxA, periplasmic domain A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 SUPERFAMILY SSF47384 224 298 2.75E-16 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 SMART SM00388 238 300 2.5E-15 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 SUPERFAMILY SSF55874 289 455 1.96E-37 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 454 2.4E-18 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 Gene3D G3DSA:3.30.565.10 302 457 1.3E-38 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 SMART SM00387 345 455 4.9E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 298 5.2E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 Gene3D G3DSA:1.10.287.130 228 296 3.4E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 1.4E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 1.4E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.4E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS23640 ea085b3ac146fc65c868a6d34d2dc325 464 SMART SM00304 184 237 1.0E-8 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Gene3D G3DSA:3.40.50.300 268 412 2.8E-12 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 11 1292 0.0 T 25-04-2017 IPR010222 RNA helicase HrpA GO:0004004 A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 579 693 2.5E-16 T 25-04-2017 IPR011709 Domain of unknown function DUF1605 A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Pfam PF00271 Helicase conserved C-terminal domain 283 399 6.7E-10 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Pfam PF04408 Helicase associated domain (HA2) 462 552 1.4E-15 T 25-04-2017 IPR007502 Helicase-associated domain GO:0004386 A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 SMART SM00490 300 400 3.7E-15 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 SUPERFAMILY SSF52540 70 596 9.0E-108 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Gene3D G3DSA:3.40.50.300 72 229 1.9E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 SMART SM00847 460 554 7.9E-34 T 25-04-2017 IPR007502 Helicase-associated domain GO:0004386 A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Gene3D G3DSA:3.40.50.300 488 606 3.5E-4 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Pfam PF00270 DEAD/DEAH box helicase 82 229 1.1E-5 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 SMART SM00382 88 380 3.6E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 SMART SM00487 71 255 3.0E-27 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS12580 782f4d46dda36b197c2ab6dae2cf63a1 1295 Pfam PF11898 Domain of unknown function (DUF3418) 708 1291 7.4E-241 T 25-04-2017 IPR024590 RNA helicase HrpA, C-terminal A4U88_RS17340 2968023a55543c64cf4b3665aaa5f92c 383 SUPERFAMILY SSF56935 46 383 1.15E-28 T 25-04-2017 A4U88_RS17340 2968023a55543c64cf4b3665aaa5f92c 383 Gene3D G3DSA:2.40.160.10 47 383 1.0E-35 T 25-04-2017 IPR023614 Porin domain A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 Gene3D G3DSA:1.10.260.40 9 64 8.2E-25 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 SUPERFAMILY SSF53822 67 343 2.55E-72 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 Gene3D G3DSA:3.40.50.2300 177 339 2.0E-54 T 25-04-2017 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 SUPERFAMILY SSF47413 7 66 7.59E-18 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 3.3E-18 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 Gene3D G3DSA:3.40.50.2300 65 176 9.0E-38 T 25-04-2017 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 Pfam PF13377 Periplasmic binding protein-like domain 178 338 2.7E-36 T 25-04-2017 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 ProSitePatterns PS00356 LacI-type HTH domain signature. 11 29 - T 25-04-2017 A4U88_RS02365 b737a0b182f8aa1d9c794acbecb5fc02 346 SMART SM00354 8 78 6.2E-32 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 PIRSF PIRSF000235 1 347 1.8E-200 T 25-04-2017 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 3.6E-200 T 25-04-2017 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 Gene3D G3DSA:3.20.20.70 2 343 5.1E-109 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 3.1E-78 T 25-04-2017 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 SUPERFAMILY SSF51412 6 335 5.89E-99 T 25-04-2017 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 55.744 T 25-04-2017 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 SMART SM01240 7 344 4.2E-138 T 25-04-2017 A4U88_RS03435 1b99aa584b34d96d7ffba7c4ffa25f51 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 25-04-2017 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 SMART SM00382 35 218 5.8E-19 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 SUPERFAMILY SSF52540 10 249 4.79E-87 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 Pfam PF08402 TOBE domain 285 365 7.3E-9 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 41 365 2.3E-161 T 25-04-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 SUPERFAMILY SSF50331 243 360 5.67E-7 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 Pfam PF00005 ABC transporter 28 167 3.3E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS09815 c45ffd8f9ebcbe1b8948920241dfb442 371 Gene3D G3DSA:3.40.50.300 4 246 6.1E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 212 2.0E-90 T 25-04-2017 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 Pfam PF01470 Pyroglutamyl peptidase 3 201 2.2E-81 T 25-04-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 25-04-2017 IPR033694 Pyroglutamyl peptidase I, Cys active site A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 SUPERFAMILY SSF53182 1 214 1.11E-73 T 25-04-2017 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 Gene3D G3DSA:3.40.630.20 2 211 2.7E-70 T 25-04-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 PIRSF PIRSF015592 1 212 2.4E-87 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 200 41.722 T 25-04-2017 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 161 173 3.1E-48 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 3.1E-48 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 3.1E-48 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 3.1E-48 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 3.1E-48 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS05935 05c5307c3e1de5f5d3282e20e3d30b2e 214 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 25-04-2017 IPR033693 Pyroglutamyl peptidase I, Glu active site A4U88_RS24195 fc12829db7c87643bae656e6b8250d95 134 Pfam PF00293 NUDIX domain 14 113 1.9E-12 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS24195 fc12829db7c87643bae656e6b8250d95 134 ProSitePatterns PS00893 Nudix box signature. 35 56 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS24195 fc12829db7c87643bae656e6b8250d95 134 Gene3D G3DSA:3.90.79.10 10 119 2.1E-19 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS24195 fc12829db7c87643bae656e6b8250d95 134 SUPERFAMILY SSF55811 11 116 1.49E-18 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 SUPERFAMILY SSF56214 115 197 8.02E-15 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 PRINTS PR01399 Enterobactin synthetase component D signature 51 71 2.7E-16 T 25-04-2017 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 PRINTS PR01399 Enterobactin synthetase component D signature 81 99 2.7E-16 T 25-04-2017 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 PRINTS PR01399 Enterobactin synthetase component D signature 158 174 2.7E-16 T 25-04-2017 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 Gene3D G3DSA:3.90.470.20 121 197 1.2E-6 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 115 196 1.3E-11 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS15825 f4f7e9f5a2c10adc198b06c5c1ed3d3c 230 Gene3D G3DSA:3.90.470.20 51 120 4.9E-4 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS12305 c8daf724961543e5e2358f2097e68d81 351 Pfam PF07582 AP endonuclease family 2 C terminus 280 334 3.3E-21 T 25-04-2017 IPR011418 AP endonuclease, family 2, C-terminal A4U88_RS12305 c8daf724961543e5e2358f2097e68d81 351 Gene3D G3DSA:3.20.20.150 11 322 1.5E-66 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS12305 c8daf724961543e5e2358f2097e68d81 351 SUPERFAMILY SSF51658 9 322 4.28E-59 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS12305 c8daf724961543e5e2358f2097e68d81 351 Pfam PF01261 Xylose isomerase-like TIM barrel 29 279 5.8E-34 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 SMART SM00930 263 338 9.0E-23 T 25-04-2017 IPR018449 NIL domain A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 SUPERFAMILY SSF52540 1 240 1.14E-81 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 SUPERFAMILY SSF55021 250 340 2.52E-18 T 25-04-2017 A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 Pfam PF09383 NIL domain 266 337 4.8E-16 T 25-04-2017 IPR018449 NIL domain A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 Gene3D G3DSA:3.40.50.300 1 236 1.6E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 Pfam PF00005 ABC transporter 21 169 5.2E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 SMART SM00382 30 218 2.3E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06755 25777ea50fcee98d227eef72f9af4a5e 341 Gene3D G3DSA:3.30.70.260 237 340 4.0E-25 T 25-04-2017 A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 SMART SM00354 7 77 9.4E-26 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 67 268 6.0E-20 T 25-04-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 SUPERFAMILY SSF53822 65 319 5.89E-43 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 Gene3D G3DSA:3.40.50.2300 184 308 1.0E-19 T 25-04-2017 A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 Gene3D G3DSA:1.10.260.40 8 59 7.1E-22 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 SUPERFAMILY SSF47413 7 65 1.88E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 54 3.8E-16 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS16155 38de9b88cd0c2e91f8d49385a5a6d173 334 Gene3D G3DSA:3.40.50.2300 60 183 5.4E-35 T 25-04-2017 A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 9.4E-13 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 9.4E-13 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 9.4E-13 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 Gene3D G3DSA:3.40.50.720 4 252 6.2E-86 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 SUPERFAMILY SSF51735 8 252 9.16E-82 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 2.9E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 2.9E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 2.9E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.9E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 2.9E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 2.9E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 149 7.2E-4 T 25-04-2017 A4U88_RS16770 c37f7fa8ea6edc95ba93304259f5c833 254 Pfam PF00106 short chain dehydrogenase 10 202 1.2E-63 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 Pfam PF00482 Type II secretion system (T2SS), protein F 270 390 2.0E-27 T 25-04-2017 IPR018076 Type II secretion system F domain A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 Pfam PF00482 Type II secretion system (T2SS), protein F 64 187 4.7E-31 T 25-04-2017 IPR018076 Type II secretion system F domain A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 159 187 - T 25-04-2017 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 159 187 4.5E-16 T 25-04-2017 IPR003004 GspF/PilC family A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 60 72 4.5E-16 T 25-04-2017 IPR003004 GspF/PilC family A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 379 398 4.5E-16 T 25-04-2017 IPR003004 GspF/PilC family A4U88_RS03440 6dbedd25f5f0d9faa3c4c44b72ed8732 399 PRINTS PR00812 Bacterial general secretion pathway protein F signature 363 377 4.5E-16 T 25-04-2017 IPR003004 GspF/PilC family A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 Pfam PF03880 DbpA RNA binding domain 387 457 4.4E-23 T 25-04-2017 IPR005580 DbpA, RNA-binding domain A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 Gene3D G3DSA:3.40.50.300 4 210 3.1E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 Pfam PF00271 Helicase conserved C-terminal domain 234 337 5.6E-27 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 SUPERFAMILY SSF52540 74 358 8.99E-71 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 6 460 69.206 T 25-04-2017 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 SMART SM00487 23 220 2.2E-56 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 Gene3D G3DSA:3.40.50.300 213 369 5.5E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 SMART SM00490 256 337 4.3E-29 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 25-04-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site A4U88_RS13740 941c7cb2f362f2a304c637c94bcd070d 460 Pfam PF00270 DEAD/DEAH box helicase 28 193 3.6E-44 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 ProSitePatterns PS00123 Alkaline phosphatase active site. 125 133 - T 25-04-2017 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 Gene3D G3DSA:3.40.720.10 53 474 4.3E-140 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 Pfam PF00245 Alkaline phosphatase 68 434 2.1E-122 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 PRINTS PR00113 Alkaline phosphatase signature 225 235 4.6E-50 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 PRINTS PR00113 Alkaline phosphatase signature 68 88 4.6E-50 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 PRINTS PR00113 Alkaline phosphatase signature 125 140 4.6E-50 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 PRINTS PR00113 Alkaline phosphatase signature 162 182 4.6E-50 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 PRINTS PR00113 Alkaline phosphatase signature 324 353 4.6E-50 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 SUPERFAMILY SSF53649 51 474 8.43E-135 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS07415 10013293fc8eaa5cd76f9c1bc26a29fd 475 SMART SM00098 69 475 8.5E-201 T 25-04-2017 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 Gene3D G3DSA:3.40.50.2300 3 124 2.3E-40 T 25-04-2017 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 Gene3D G3DSA:1.10.10.10 129 226 3.8E-37 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 SMART SM00862 150 225 2.7E-27 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 7.0E-115 T 25-04-2017 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 SUPERFAMILY SSF46894 129 226 1.87E-32 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 Pfam PF00072 Response regulator receiver domain 5 117 1.5E-27 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 SMART SM00448 3 116 3.2E-44 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 SUPERFAMILY SSF52172 3 126 1.85E-42 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS04730 bf7144cd4adc7132d3b1858a4330e53e 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 2.1E-28 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS15290 b64736cb70e01448defdf40e40305b51 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 6 263 7.0E-132 T 25-04-2017 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18 A4U88_RS15290 b64736cb70e01448defdf40e40305b51 263 SUPERFAMILY SSF52096 2 262 1.1E-85 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS15290 b64736cb70e01448defdf40e40305b51 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 262 1.1E-66 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS15290 b64736cb70e01448defdf40e40305b51 263 Gene3D G3DSA:1.10.12.10 205 263 1.1E-17 T 25-04-2017 IPR014748 Crontonase, C-terminal A4U88_RS15290 b64736cb70e01448defdf40e40305b51 263 Gene3D G3DSA:3.90.226.10 8 203 1.5E-68 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 SUPERFAMILY SSF53067 254 499 5.51E-49 T 25-04-2017 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 PIRSF PIRSF000538 1 504 7.7E-115 T 25-04-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 134 146 - T 25-04-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 TIGRFAM TIGR01312 XylB: xylulokinase 6 494 1.6E-160 T 25-04-2017 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 263 444 5.4E-28 T 25-04-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 Gene3D G3DSA:3.30.420.40 256 499 3.2E-39 T 25-04-2017 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 SUPERFAMILY SSF53067 3 254 3.02E-63 T 25-04-2017 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 Gene3D G3DSA:3.30.420.40 2 252 4.9E-57 T 25-04-2017 A4U88_RS13115 8dc7769a3a92c2b81d82aecbfad94aeb 505 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 252 1.5E-67 T 25-04-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 Gene3D G3DSA:1.20.58.180 215 298 4.3E-37 T 25-04-2017 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.659 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 Gene3D G3DSA:3.30.930.10 4 213 7.9E-107 T 25-04-2017 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 SUPERFAMILY SSF55681 8 292 6.84E-135 T 25-04-2017 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 4.0E-176 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 291 9.8E-150 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.3E-71 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.3E-71 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.3E-71 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.3E-71 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.3E-71 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00130 249060494763bf08cf385a5e0e3f9c36 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.3E-71 T 25-04-2017 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 56 4.3E-13 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 Gene3D G3DSA:3.40.50.2300 180 310 7.7E-46 T 25-04-2017 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 Pfam PF13377 Periplasmic binding protein-like domain 175 331 2.8E-29 T 25-04-2017 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 Gene3D G3DSA:3.40.50.2300 62 179 2.2E-41 T 25-04-2017 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 SMART SM00354 8 79 2.2E-23 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 Gene3D G3DSA:1.10.260.40 9 61 4.7E-21 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 SUPERFAMILY SSF47413 7 67 4.66E-14 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS21935 ed0871181b0621344d1c5bc35181da78 333 SUPERFAMILY SSF53822 69 332 1.07E-68 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS05165 49447f8f2fe62a10cf8a6339987c3657 183 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 11 180 38.415 T 25-04-2017 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 A4U88_RS05165 49447f8f2fe62a10cf8a6339987c3657 183 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 11 179 5.1E-72 T 25-04-2017 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 A4U88_RS05165 49447f8f2fe62a10cf8a6339987c3657 183 SUPERFAMILY SSF53271 14 180 1.48E-52 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS05165 49447f8f2fe62a10cf8a6339987c3657 183 Gene3D G3DSA:3.40.50.2020 7 180 1.4E-68 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS05165 49447f8f2fe62a10cf8a6339987c3657 183 Pfam PF00156 Phosphoribosyl transferase domain 31 164 5.7E-17 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Pfam PF00158 Sigma-54 interaction domain 141 307 7.6E-70 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 25-04-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Gene3D G3DSA:3.40.50.300 139 313 3.1E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 8.0E-11 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 8.0E-11 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 25-04-2017 IPR025944 Sigma-54 interaction domain, conserved site A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 1.6E-15 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 SMART SM00448 4 115 9.0E-36 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Gene3D G3DSA:1.10.10.60 399 470 9.8E-25 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 SUPERFAMILY SSF46689 381 470 4.66E-25 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 25-04-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 467 2.1E-245 T 25-04-2017 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Gene3D G3DSA:3.40.50.2300 6 136 7.6E-37 T 25-04-2017 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Pfam PF00072 Response regulator receiver domain 6 115 2.1E-30 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 SUPERFAMILY SSF52540 140 383 3.55E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 Gene3D G3DSA:1.10.8.60 314 392 1.5E-24 T 25-04-2017 A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 SMART SM00382 161 312 2.1E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS23930 b6b03477e93f5c3aa556dccfecb3d3a9 470 SUPERFAMILY SSF52172 6 186 7.97E-46 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 SUPERFAMILY SSF56176 7 199 2.45E-40 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 Gene3D G3DSA:3.30.43.10 7 71 1.9E-21 T 25-04-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 SUPERFAMILY SSF56194 205 341 8.24E-54 T 25-04-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 Gene3D G3DSA:3.30.465.10 76 232 2.6E-50 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 87.78 T 25-04-2017 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 Pfam PF01565 FAD binding domain 24 149 1.7E-19 T 25-04-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 208 332 7.7E-37 T 25-04-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 333 1.8E-107 T 25-04-2017 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS01090 a54c0376f7d400b620a515659c728a39 345 Gene3D G3DSA:3.90.78.10 233 341 9.5E-49 T 25-04-2017 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS07265 85c83271e3a348a7683888a2c7841e50 258 PIRSF PIRSF006241 1 258 1.1E-87 T 25-04-2017 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 A4U88_RS07265 85c83271e3a348a7683888a2c7841e50 258 SUPERFAMILY SSF51658 1 257 2.21E-84 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS07265 85c83271e3a348a7683888a2c7841e50 258 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 4.0E-35 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS07265 85c83271e3a348a7683888a2c7841e50 258 Gene3D G3DSA:3.20.20.150 1 257 6.5E-87 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Gene3D G3DSA:3.40.50.980 185 216 3.2E-42 T 25-04-2017 A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Gene3D G3DSA:3.40.50.980 24 152 3.2E-42 T 25-04-2017 A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Gene3D G3DSA:3.40.50.980 217 379 6.1E-41 T 25-04-2017 A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 1.2E-18 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Gene3D G3DSA:3.30.300.30 455 552 4.2E-29 T 25-04-2017 A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 SUPERFAMILY SSF56801 21 553 1.19E-149 T 25-04-2017 A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Pfam PF00501 AMP-binding enzyme 29 460 3.5E-109 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS13500 27e76677764e550a6e7d5dfd10f65e37 562 Gene3D G3DSA:2.30.38.10 380 451 5.4E-30 T 25-04-2017 A4U88_RS03885 f981ebe9af630ce2c50fd71fee3cddc4 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 7.6E-22 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS03885 f981ebe9af630ce2c50fd71fee3cddc4 113 Gene3D G3DSA:3.30.160.100 3 91 7.9E-32 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS03885 f981ebe9af630ce2c50fd71fee3cddc4 113 SUPERFAMILY SSF69754 3 102 3.4E-32 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS03885 f981ebe9af630ce2c50fd71fee3cddc4 113 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 96 9.1E-34 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS21410 72f6577eb6d91ab1520b736a12b93504 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 7.7E-29 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS21410 72f6577eb6d91ab1520b736a12b93504 95 Gene3D G3DSA:3.30.160.100 1 95 7.0E-39 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS21410 72f6577eb6d91ab1520b736a12b93504 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 5.2E-35 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS21410 72f6577eb6d91ab1520b736a12b93504 95 SUPERFAMILY SSF69754 2 95 9.16E-36 T 25-04-2017 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 A4U88_RS13450 a74adeea7a70364914c46f0f4ddbcdf4 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 1.8E-45 T 25-04-2017 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 A4U88_RS13450 a74adeea7a70364914c46f0f4ddbcdf4 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.458 T 25-04-2017 IPR022920 Disulphide bond formation protein DsbB A4U88_RS13450 a74adeea7a70364914c46f0f4ddbcdf4 176 Gene3D G3DSA:1.20.1550.10 1 174 3.0E-71 T 25-04-2017 IPR023380 Disulphide bond formation protein DsbB-like domain A4U88_RS13450 a74adeea7a70364914c46f0f4ddbcdf4 176 SUPERFAMILY SSF158442 15 161 1.57E-46 T 25-04-2017 A4U88_RS15550 64ec64dc4b7c3cce106e154d12f0fe70 613 PIRSF PIRSF028304 2 609 3.9E-147 T 25-04-2017 IPR010272 Type VI secretion system, TssF-like A4U88_RS15550 64ec64dc4b7c3cce106e154d12f0fe70 613 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 7 599 5.2E-133 T 25-04-2017 IPR010272 Type VI secretion system, TssF-like A4U88_RS15550 64ec64dc4b7c3cce106e154d12f0fe70 613 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 6 591 3.1E-111 T 25-04-2017 IPR010272 Type VI secretion system, TssF-like A4U88_RS06235 11f9d8fcdfad3e8c4fef8c63b35ba86e 160 SUPERFAMILY SSF49777 3 160 1.03E-52 T 25-04-2017 IPR008914 Phosphatidylethanolamine-binding protein A4U88_RS06235 11f9d8fcdfad3e8c4fef8c63b35ba86e 160 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 21 159 4.6E-52 T 25-04-2017 IPR005247 YbhB/YbcL A4U88_RS06235 11f9d8fcdfad3e8c4fef8c63b35ba86e 160 Pfam PF01161 Phosphatidylethanolamine-binding protein 28 159 2.4E-38 T 25-04-2017 IPR008914 Phosphatidylethanolamine-binding protein A4U88_RS06235 11f9d8fcdfad3e8c4fef8c63b35ba86e 160 Gene3D G3DSA:3.90.280.10 3 159 3.0E-56 T 25-04-2017 IPR008914 Phosphatidylethanolamine-binding protein A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 3.0E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 3.0E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.0E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 3.0E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 Gene3D G3DSA:3.40.50.720 9 237 3.6E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 236 1.4E-29 T 25-04-2017 A4U88_RS12545 eb0c90df725712c17afd9d137d8d1ea6 240 SUPERFAMILY SSF51735 9 237 7.59E-43 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.756 T 25-04-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 PIRSF PIRSF000414 1 529 1.1E-230 T 25-04-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 SMART SM00798 137 461 4.6E-217 T 25-04-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 SUPERFAMILY SSF53927 221 529 2.21E-131 T 25-04-2017 IPR016193 Cytidine deaminase-like GO:0003824 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 Gene3D G3DSA:3.40.50.1380 6 190 2.1E-87 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 5.8E-120 T 25-04-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 2.5E-265 T 25-04-2017 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 SMART SM00851 19 132 9.2E-63 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 Gene3D G3DSA:3.40.140.20 253 372 3.8E-51 T 25-04-2017 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 SUPERFAMILY SSF52335 7 196 1.44E-72 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 Pfam PF02142 MGS-like domain 19 132 3.1E-30 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS01270 91c0ca40bf47d127ab35e17206256870 529 Gene3D G3DSA:3.40.140.20 377 519 5.6E-60 T 25-04-2017 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 Pfam PF00107 Zinc-binding dehydrogenase 200 319 4.7E-24 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 SUPERFAMILY SSF51735 163 337 6.93E-49 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 157 1.9E-26 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 SMART SM00829 13 370 1.7E-4 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 Gene3D G3DSA:3.90.180.10 3 192 6.9E-72 T 25-04-2017 IPR011032 GroES-like A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 Gene3D G3DSA:3.40.50.720 193 312 1.2E-43 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 SUPERFAMILY SSF50129 2 189 4.57E-75 T 25-04-2017 IPR011032 GroES-like A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 5 372 2.4E-227 T 25-04-2017 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|Reactome: R-HSA-71384 A4U88_RS07540 df72bda8b92b859570a38d79f0c23b82 374 SUPERFAMILY SSF50129 321 372 2.82E-12 T 25-04-2017 IPR011032 GroES-like A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Pfam PF14520 Helix-hairpin-helix domain 560 609 6.0E-8 T 25-04-2017 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 30.018 T 25-04-2017 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Gene3D G3DSA:3.40.1440.10 17 97 1.8E-11 T 25-04-2017 IPR027299 GIY-YIG domain A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Gene3D G3DSA:1.10.150.20 555 609 6.0E-22 T 25-04-2017 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 SUPERFAMILY SSF47781 521 609 7.94E-18 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 SUPERFAMILY SSF82771 17 100 1.83E-24 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 SMART SM00278 588 607 0.093 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 SMART SM00278 556 575 15.0 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Pfam PF02151 UvrB/uvrC motif 205 237 1.2E-9 T 25-04-2017 IPR001943 UVR domain GO:0005515 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Gene3D G3DSA:4.10.860.10 183 243 4.9E-21 T 25-04-2017 IPR001943 UVR domain GO:0005515 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 SMART SM00465 17 98 8.1E-23 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 9 589 6.3E-229 T 25-04-2017 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 542 6.1E-44 T 25-04-2017 IPR001162 UvrC family homology region A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 SUPERFAMILY SSF46600 190 243 2.75E-13 T 25-04-2017 IPR001943 UVR domain GO:0005515 A4U88_RS08895 c1d8eeb73f81192e290b543c7e2a7bfe 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 1.9E-12 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS19475 afd1b6d32cd51b7392acb668d6b3fa7a 228 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 1.5E-32 T 25-04-2017 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 A4U88_RS19475 afd1b6d32cd51b7392acb668d6b3fa7a 228 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 10 226 3.1E-108 T 25-04-2017 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 A4U88_RS19475 afd1b6d32cd51b7392acb668d6b3fa7a 228 SMART SM00927 59 157 1.1E-63 T 25-04-2017 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 A4U88_RS19475 afd1b6d32cd51b7392acb668d6b3fa7a 228 Gene3D G3DSA:3.40.600.10 7 226 2.7E-79 T 25-04-2017 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 A4U88_RS19475 afd1b6d32cd51b7392acb668d6b3fa7a 228 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 228 154.782 T 25-04-2017 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 A4U88_RS19475 afd1b6d32cd51b7392acb668d6b3fa7a 228 SUPERFAMILY SSF52980 8 226 6.43E-80 T 25-04-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 SUPERFAMILY SSF52922 533 664 9.03E-44 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 2.3E-44 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 SUPERFAMILY SSF52518 5 331 2.41E-120 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 Gene3D G3DSA:3.40.50.970 4 322 3.7E-135 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.5E-20 T 25-04-2017 IPR033248 Transketolase, C-terminal domain A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 Gene3D G3DSA:3.40.50.970 327 533 3.7E-80 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 3.2E-170 T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 SUPERFAMILY SSF52518 335 526 2.24E-67 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 25-04-2017 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 25-04-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 SMART SM00861 355 526 1.1E-67 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS17805 36811959112a0a525e5550720cadfae1 664 Gene3D G3DSA:3.40.50.920 538 663 2.7E-52 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 SUPERFAMILY SSF52922 533 664 9.03E-44 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 Pfam PF02779 Transketolase, pyrimidine binding domain 355 524 2.3E-44 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 SUPERFAMILY SSF52518 5 331 2.41E-120 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 Gene3D G3DSA:3.40.50.970 4 322 3.7E-135 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 Pfam PF02780 Transketolase, C-terminal domain 540 655 5.5E-20 T 25-04-2017 IPR033248 Transketolase, C-terminal domain A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 Gene3D G3DSA:3.40.50.970 327 533 3.7E-80 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 3.2E-170 T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 SUPERFAMILY SSF52518 335 526 2.24E-67 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 25-04-2017 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 25-04-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 SMART SM00861 355 526 1.1E-67 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS20215 36811959112a0a525e5550720cadfae1 664 Gene3D G3DSA:3.40.50.920 538 663 2.7E-52 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS06740 81c5ec948ea741e478dea31293b57156 214 SUPERFAMILY SSF48498 92 205 1.95E-26 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS06740 81c5ec948ea741e478dea31293b57156 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 70 1.1E-12 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS06740 81c5ec948ea741e478dea31293b57156 214 SUPERFAMILY SSF46689 12 94 2.31E-17 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06740 81c5ec948ea741e478dea31293b57156 214 Gene3D G3DSA:1.10.10.60 12 78 1.5E-23 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06740 81c5ec948ea741e478dea31293b57156 214 Gene3D G3DSA:1.10.357.10 80 207 1.5E-39 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS20505 8fe3921c6e87d7f66b9e32aa83250c73 184 Pfam PF01799 [2Fe-2S] binding domain 84 168 7.3E-23 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS20505 8fe3921c6e87d7f66b9e32aa83250c73 184 Gene3D G3DSA:1.10.150.120 86 174 7.2E-25 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS20505 8fe3921c6e87d7f66b9e32aa83250c73 184 SUPERFAMILY SSF54292 8 89 1.57E-16 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS20505 8fe3921c6e87d7f66b9e32aa83250c73 184 SUPERFAMILY SSF47741 101 173 2.36E-22 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS20505 8fe3921c6e87d7f66b9e32aa83250c73 184 Gene3D G3DSA:3.10.20.30 5 85 1.9E-18 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 Gene3D G3DSA:3.90.1150.10 261 396 4.8E-50 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 394 2.1E-139 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 9 396 5.2E-173 T 25-04-2017 IPR006237 L-methionine gamma-lyase GO:0018826 KEGG: 00270+4.4.1.11|KEGG: 00450+4.4.1.11|KEGG: 00920+4.4.1.2 A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 Gene3D G3DSA:3.40.640.10 9 260 1.7E-97 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 PIRSF PIRSF001434 1 398 3.2E-144 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 SUPERFAMILY SSF53383 30 395 1.17E-123 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS03550 eaed00681cd6659d96307b7a6f005618 398 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS05645 da5ff32784cc112c1e9b1c9702b618ec 186 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 5 164 27.46 T 25-04-2017 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 A4U88_RS05645 da5ff32784cc112c1e9b1c9702b618ec 186 Pfam PF04390 Lipopolysaccharide-assembly 12 159 7.0E-25 T 25-04-2017 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 A4U88_RS05645 da5ff32784cc112c1e9b1c9702b618ec 186 Gene3D G3DSA:3.30.160.150 20 171 1.3E-65 T 25-04-2017 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 47 55 - T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 Pfam PF13505 Outer membrane protein beta-barrel domain 10 172 5.4E-22 T 25-04-2017 IPR027385 Outer membrane protein beta-barrel A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 SUPERFAMILY SSF56925 28 172 2.88E-28 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 164 172 - T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 Gene3D G3DSA:2.40.160.20 26 172 5.3E-41 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 46 58 4.2E-38 T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 133 154 4.2E-38 T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 160 171 4.2E-38 T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS07240 1762e3cb0548000517c237ebee95fe2e 172 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 85 108 4.2E-38 T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 SUPERFAMILY SSF50022 18 171 8.38E-42 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 SUPERFAMILY SSF55961 172 449 1.1E-60 T 25-04-2017 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 204 398 3.0E-16 T 25-04-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 Pfam PF00355 Rieske [2Fe-2S] domain 53 136 3.8E-20 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 89 109 4.2E-44 T 25-04-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 156 182 4.2E-44 T 25-04-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 197 219 4.2E-44 T 25-04-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 38 63 4.2E-44 T 25-04-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 68 83 4.2E-44 T 25-04-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 110 130 4.2E-44 T 25-04-2017 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 Gene3D G3DSA:3.90.380.10 150 452 2.9E-80 T 25-04-2017 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 96 119 - T 25-04-2017 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 A4U88_RS14870 fc335d0a924a3a349c1423c9c58b4834 458 Gene3D G3DSA:2.102.10.10 53 141 2.8E-21 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 SUPERFAMILY SSF53850 96 299 3.26E-30 T 25-04-2017 A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 Gene3D G3DSA:3.40.190.10 96 181 1.9E-16 T 25-04-2017 A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 Gene3D G3DSA:1.10.10.10 1 87 1.5E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.1E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 Gene3D G3DSA:3.40.190.10 182 250 6.4E-8 T 25-04-2017 A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 SUPERFAMILY SSF46785 1 110 8.06E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16195 151fea2acd557bfd5e7bc6d0c33d2ea7 317 Pfam PF03466 LysR substrate binding domain 96 295 4.8E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23710 79ae987d4caaac6de8a8f73f54ba5e7f 309 Gene3D G3DSA:3.90.25.10 171 289 3.0E-36 T 25-04-2017 A4U88_RS23710 79ae987d4caaac6de8a8f73f54ba5e7f 309 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 307 4.4E-136 T 25-04-2017 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 A4U88_RS23710 79ae987d4caaac6de8a8f73f54ba5e7f 309 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 308 57.902 T 25-04-2017 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 A4U88_RS23710 79ae987d4caaac6de8a8f73f54ba5e7f 309 SUPERFAMILY SSF51735 1 305 1.26E-63 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23710 79ae987d4caaac6de8a8f73f54ba5e7f 309 Gene3D G3DSA:3.40.50.720 2 170 1.3E-23 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23710 79ae987d4caaac6de8a8f73f54ba5e7f 309 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 235 6.5E-47 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 193 204 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 Pfam PF13484 4Fe-4S double cluster binding domain 192 256 1.7E-18 T 25-04-2017 A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 348 1.6E-152 T 25-04-2017 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 Pfam PF08331 Domain of unknown function (DUF1730) 62 140 7.8E-24 T 25-04-2017 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 315 51.53 T 25-04-2017 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 Gene3D G3DSA:3.30.70.20 190 259 1.4E-6 T 25-04-2017 A4U88_RS01630 06af853ae96b80eb5611e24d2df96c2f 379 SUPERFAMILY SSF54862 169 319 2.93E-18 T 25-04-2017 A4U88_RS02050 af534db6d3d353270901b57f21c19b8e 98 Pfam PF01541 GIY-YIG catalytic domain 6 74 3.0E-12 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS02050 af534db6d3d353270901b57f21c19b8e 98 SUPERFAMILY SSF82771 6 73 4.45E-11 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS02050 af534db6d3d353270901b57f21c19b8e 98 Hamap MF_01029 UPF0213 protein YhbQ [yhbQ]. 3 95 31.164 T 25-04-2017 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease A4U88_RS22885 16fe1dabe478288dc0b3ec8f0e9838fa 171 Pfam PF00583 Acetyltransferase (GNAT) family 58 138 1.5E-18 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS22885 16fe1dabe478288dc0b3ec8f0e9838fa 171 Gene3D G3DSA:3.40.630.30 2 163 3.0E-41 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS22885 16fe1dabe478288dc0b3ec8f0e9838fa 171 SUPERFAMILY SSF55729 4 162 3.04E-38 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 SUPERFAMILY SSF118215 29 442 3.01E-97 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 6.2E-26 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 6.2E-26 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 6.2E-26 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 6.2E-26 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 6.2E-26 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 6.2E-26 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 Pfam PF00375 Sodium:dicarboxylate symporter family 29 442 2.1E-103 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS10385 55b3bfd9a960e8e6d3c47a7eae1779c0 463 Gene3D G3DSA:1.10.3860.10 23 449 3.7E-102 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS05700 6b21827ef90c7ed3db08da86508c240b 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 40 144 3.5E-37 T 25-04-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 A4U88_RS05700 6b21827ef90c7ed3db08da86508c240b 157 SUPERFAMILY SSF55486 3 150 2.44E-50 T 25-04-2017 A4U88_RS05700 6b21827ef90c7ed3db08da86508c240b 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 148 24.987 T 25-04-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 A4U88_RS05700 6b21827ef90c7ed3db08da86508c240b 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 114 124 - T 25-04-2017 IPR020549 Endoribonuclease YbeY, conserved site A4U88_RS05700 6b21827ef90c7ed3db08da86508c240b 157 Pfam PF02130 Uncharacterized protein family UPF0054 21 143 9.7E-40 T 25-04-2017 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 A4U88_RS05700 6b21827ef90c7ed3db08da86508c240b 157 Gene3D G3DSA:3.40.390.30 10 153 4.9E-52 T 25-04-2017 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.30.365.10 795 928 8.5E-56 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.30.365.10 451 551 8.5E-56 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.30.365.10 374 436 1.4E-4 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 SUPERFAMILY SSF54665 54 175 1.15E-11 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 264 607 3.6E-55 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 637 868 2.6E-19 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.30.365.10 552 716 4.3E-27 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.30.365.10 778 794 4.3E-27 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.30.365.10 263 371 2.9E-12 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 Gene3D G3DSA:3.90.1170.50 56 169 9.9E-4 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 SUPERFAMILY SSF56003 637 741 1.18E-115 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 SUPERFAMILY SSF56003 784 928 1.18E-115 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS20510 b185ce510ce6971db53fe69664f35b2f 929 SUPERFAMILY SSF56003 263 609 1.18E-115 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 SMART SM00850 143 238 1.1E-27 T 25-04-2017 IPR007492 LytTR DNA-binding domain GO:0003677 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 SMART SM00448 2 112 6.7E-27 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 Gene3D G3DSA:3.40.50.2300 1 121 1.1E-30 T 25-04-2017 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 Pfam PF04397 LytTr DNA-binding domain 144 237 1.3E-22 T 25-04-2017 IPR007492 LytTR DNA-binding domain GO:0003677 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 Pfam PF00072 Response regulator receiver domain 5 112 2.3E-24 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 Gene3D G3DSA:2.20.25.10 215 239 4.6E-6 T 25-04-2017 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 Gene3D G3DSA:2.40.50.40 135 200 3.0E-11 T 25-04-2017 A4U88_RS22550 c5ea10eee2c314220b2b573f70830a28 241 SUPERFAMILY SSF52172 1 122 1.99E-32 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 Gene3D G3DSA:3.40.1190.20 1 307 2.9E-85 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 PRINTS PR00990 Ribokinase signature 216 227 7.7E-5 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 PRINTS PR00990 Ribokinase signature 23 42 7.7E-5 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 Pfam PF00294 pfkB family carbohydrate kinase 2 298 6.5E-68 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 28 52 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 SUPERFAMILY SSF53613 1 307 4.99E-83 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS20745 97c620d1bf3bdb3586ceea11d34b1bb4 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 6.7E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 6.7E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 6.7E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 6.7E-13 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 517 8.0E-28 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SUPERFAMILY SSF47226 760 895 1.44E-22 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Pfam PF00072 Response regulator receiver domain 666 775 1.4E-26 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Gene3D G3DSA:1.20.120.160 770 904 1.8E-18 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SUPERFAMILY SSF55874 345 515 1.11E-43 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Gene3D G3DSA:3.30.565.10 357 518 2.8E-44 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Gene3D G3DSA:1.10.287.130 283 352 3.8E-19 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 356 6.0E-20 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SMART SM00388 291 356 5.6E-25 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SUPERFAMILY SSF47384 276 357 1.88E-22 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Pfam PF00672 HAMP domain 181 247 3.7E-11 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Gene3D G3DSA:3.40.50.2300 657 769 1.7E-35 T 25-04-2017 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Pfam PF01627 Hpt domain 816 895 6.4E-11 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SUPERFAMILY SSF52172 663 781 1.99E-33 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SMART SM00073 806 901 1.3E-10 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 176 7.8E-58 T 25-04-2017 IPR019247 Histidine kinase BarA, N-terminal A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SUPERFAMILY SSF158472 199 248 4.84E-5 T 25-04-2017 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SMART SM00387 403 519 5.5E-34 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SMART SM00304 199 251 1.3E-7 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS03510 31675845c9dacacc4a1af913549b68ca 908 SMART SM00448 664 777 1.9E-31 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 41.533 T 25-04-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 SMART SM00448 4 119 6.7E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 SUPERFAMILY SSF52172 1 108 5.27E-27 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 SUPERFAMILY SSF52738 156 342 1.19E-75 T 25-04-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 Gene3D G3DSA:3.40.50.180 155 341 2.3E-86 T 25-04-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 Pfam PF01339 CheB methylesterase 159 336 8.9E-64 T 25-04-2017 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 Pfam PF00072 Response regulator receiver domain 6 109 6.2E-24 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 PIRSF PIRSF000876 1 346 1.7E-138 T 25-04-2017 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 A4U88_RS14525 307f1c6a1eb1930caa94b6405e0e3de2 349 Gene3D G3DSA:3.40.50.2300 2 108 9.6E-27 T 25-04-2017 A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 Gene3D G3DSA:3.40.50.300 141 286 3.0E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 Gene3D G3DSA:3.40.50.300 11 109 3.0E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 SMART SM00382 31 236 5.3E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 SMART SM00382 348 522 1.2E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 Pfam PF00005 ABC transporter 340 473 1.5E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 Pfam PF00005 ABC transporter 22 191 4.7E-31 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 1.5E-293 T 25-04-2017 IPR022374 ABC transporter, ATP-binding protein, ChvD A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 Gene3D G3DSA:3.40.50.300 322 535 4.8E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 SUPERFAMILY SSF52540 301 526 2.24E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 SUPERFAMILY SSF52540 11 243 1.1E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02940 c99fe2f4b97ffd78f89c2d23a62eb924 555 Pfam PF12848 ABC transporter 230 306 1.5E-11 T 25-04-2017 IPR032781 ABC-transporter extension domain A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 SUPERFAMILY SSF51569 1 293 3.56E-98 T 25-04-2017 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 PIRSF PIRSF001365 1 293 4.2E-93 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 289 1.6E-119 T 25-04-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 289 65.65 T 25-04-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 25-04-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 SMART SM01130 1 291 3.3E-142 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 25-04-2017 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.3E-34 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.3E-34 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 2.3E-34 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.3E-34 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 Gene3D G3DSA:3.20.20.70 1 293 5.2E-116 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS17895 eb4dd48fc3e49d87b54a7192be8d012d 293 Pfam PF00701 Dihydrodipicolinate synthetase family 2 289 1.5E-114 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS04010 247063a441726aabce80fa363c6070b1 464 Pfam PF01425 Amidase 25 443 4.5E-98 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS04010 247063a441726aabce80fa363c6070b1 464 SUPERFAMILY SSF75304 2 453 1.57E-129 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS04010 247063a441726aabce80fa363c6070b1 464 Gene3D G3DSA:3.90.1300.10 3 454 3.6E-134 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS04010 247063a441726aabce80fa363c6070b1 464 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 9 457 4.5E-220 T 25-04-2017 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169 A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1113 21.25 T 25-04-2017 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 PIRSF PIRSF000980 1 1122 0.0 T 25-04-2017 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 Gene3D G3DSA:3.40.50.300 657 753 8.9E-8 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 Gene3D G3DSA:3.40.50.300 367 455 8.9E-8 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1088 0.0 T 25-04-2017 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 SUPERFAMILY SSF52540 360 811 1.17E-106 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 SUPERFAMILY SSF52980 819 1120 4.18E-98 T 25-04-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 2.9E-303 T 25-04-2017 A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 Gene3D G3DSA:1.10.10.160 86 183 1.4E-33 T 25-04-2017 IPR013986 DExx box DNA helicase domain A4U88_RS19430 d383a3333dc133acdaedb588c09b09f5 1123 SUPERFAMILY SSF52540 1 347 3.4E-128 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Gene3D G3DSA:3.30.70.270 464 624 5.2E-46 T 25-04-2017 A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SMART SM00086 252 294 8.7E-10 T 25-04-2017 IPR001610 PAC motif A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Gene3D G3DSA:3.30.450.20 336 451 4.4E-17 T 25-04-2017 A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 342 459 8.6E-11 T 25-04-2017 IPR000014 PAS domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 176 301 2.3E-25 T 25-04-2017 IPR000014 PAS domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SMART SM00065 26 171 9.9E-12 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SUPERFAMILY SSF55073 468 623 1.9E-41 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Pfam PF01590 GAF domain 30 154 3.2E-10 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 459 622 3.8E-35 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SUPERFAMILY SSF55785 330 450 2.44E-14 T 25-04-2017 IPR000014 PAS domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SUPERFAMILY SSF55781 30 162 6.67E-28 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Gene3D G3DSA:3.30.450.20 173 292 1.2E-24 T 25-04-2017 A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Pfam PF00990 Diguanylate cyclase, GGDEF domain 463 619 3.9E-42 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SMART SM00091 345 411 0.0038 T 25-04-2017 IPR000014 PAS domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SMART SM00091 179 245 7.0E-10 T 25-04-2017 IPR000014 PAS domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SUPERFAMILY SSF55785 187 297 8.9E-24 T 25-04-2017 IPR000014 PAS domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Gene3D G3DSA:3.30.450.40 16 161 1.0E-14 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Pfam PF08447 PAS fold 203 288 6.6E-13 T 25-04-2017 IPR013655 PAS fold-3 GO:0005515 A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 SMART SM00267 452 624 1.7E-53 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS11850 2b5e99ca6336506c4633b535a0c5bacf 626 Pfam PF08448 PAS fold 352 454 1.9E-10 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS02140 d1f5c4f3a4858517d97c86052410dfbb 351 Pfam PF03773 Predicted permease 79 346 2.8E-26 T 25-04-2017 IPR005524 Predicted permease DUF318 A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 SUPERFAMILY SSF52540 147 281 3.18E-5 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 Gene3D G3DSA:3.40.250.10 18 134 5.3E-31 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 SUPERFAMILY SSF52821 17 69 3.8E-19 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 SUPERFAMILY SSF52821 97 140 3.8E-19 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 21 351 3.8E-102 T 25-04-2017 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 SMART SM00450 7 137 2.0E-11 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS13300 99f18052b9d8caffa5bea62d289c113f 372 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 6 366 50.658 T 25-04-2017 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SUPERFAMILY SSF56091 2 316 3.52E-123 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Pfam PF12826 Helix-hairpin-helix motif 510 573 1.9E-20 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SMART SM00278 480 499 3.4 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SMART SM00278 544 563 310.0 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SMART SM00278 512 531 200.0 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SMART SM00278 446 465 15.0 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 PIRSF PIRSF001604 1 673 1.0E-253 T 25-04-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 2.3E-138 T 25-04-2017 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Pfam PF14520 Helix-hairpin-helix domain 446 502 1.2E-4 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SMART SM00532 3 448 1.7E-284 T 25-04-2017 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 7.1E-36 T 25-04-2017 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 667 3.9E-268 T 25-04-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Gene3D G3DSA:1.10.287.610 2 67 4.4E-30 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Gene3D G3DSA:3.40.50.10190 596 671 1.7E-26 T 25-04-2017 IPR001357 BRCT domain A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Gene3D G3DSA:3.30.470.30 119 252 3.3E-52 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Hamap MF_01588 DNA ligase [ligA]. 2 671 54.864 T 25-04-2017 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Gene3D G3DSA:2.40.50.140 319 390 1.1E-34 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Gene3D G3DSA:1.10.150.20 504 581 4.0E-28 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Gene3D G3DSA:1.10.150.20 435 503 2.8E-27 T 25-04-2017 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SUPERFAMILY SSF50249 318 400 7.71E-29 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SMART SM00292 597 672 1.1E-13 T 25-04-2017 IPR001357 BRCT domain A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SUPERFAMILY SSF47781 403 580 4.45E-60 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 25-04-2017 IPR018239 NAD-dependent DNA ligase, active site A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 SUPERFAMILY SSF52113 598 670 4.09E-19 T 25-04-2017 IPR001357 BRCT domain A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 3.9E-11 T 25-04-2017 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 25-04-2017 IPR033136 NAD-dependent DNA ligase, conserved site A4U88_RS17590 9711ab2f3fc611d36b91c71732699838 673 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 670 3.9E-13 T 25-04-2017 IPR001357 BRCT domain A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 140 154 1.2E-7 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 182 1.2E-7 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 170 1.2E-7 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 154 181 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 Hamap MF_00982 Transcriptional regulatory protein RcsA [rcsA]. 1 209 50.67 T 25-04-2017 IPR030866 Transcriptional regulatory protein RcsA GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 SMART SM00421 137 194 3.9E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 Gene3D G3DSA:1.10.10.10 107 189 2.1E-10 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 SUPERFAMILY SSF46894 132 188 4.42E-10 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS14955 e781d6f8e6c51fe0d487dcb6d364e2a8 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 139 193 1.7E-17 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 2.8E-135 T 25-04-2017 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 339 3.6E-26 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 45.932 T 25-04-2017 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 Gene3D G3DSA:3.30.1330.10 31 162 2.8E-33 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 1.1E-18 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 SUPERFAMILY SSF55326 7 161 3.79E-42 T 25-04-2017 A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 PIRSF PIRSF036407 1 346 7.2E-118 T 25-04-2017 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 SUPERFAMILY SSF56042 164 337 1.64E-49 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS13305 3ff3d163c37be14fbe0d05106a5b42e3 347 Gene3D G3DSA:3.90.650.10 176 343 6.2E-18 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.5E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 Gene3D G3DSA:3.40.50.2300 1 123 8.4E-37 T 25-04-2017 A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 Gene3D G3DSA:1.10.10.10 124 218 5.0E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 SMART SM00448 1 112 1.0E-36 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 SMART SM00862 145 216 3.4E-22 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 SUPERFAMILY SSF52172 1 175 8.4E-40 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS01900 f6f8e423db1efd03e59dba687a237592 220 Pfam PF00072 Response regulator receiver domain 4 112 6.1E-25 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 25-04-2017 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.7E-23 T 25-04-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 SMART SM00662 23 234 2.5E-105 T 25-04-2017 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 6.0E-24 T 25-04-2017 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF56553 53 178 3.31E-41 T 25-04-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 25-04-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Gene3D G3DSA:1.10.150.20 244 328 6.1E-38 T 25-04-2017 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF47789 251 325 1.27E-25 T 25-04-2017 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Gene3D G3DSA:3.30.1360.10 9 57 1.5E-10 T 25-04-2017 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Gene3D G3DSA:2.170.120.12 58 177 8.7E-40 T 25-04-2017 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF55257 179 231 1.57E-30 T 25-04-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 SUPERFAMILY SSF55257 6 53 1.57E-30 T 25-04-2017 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.587 T 25-04-2017 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS22220 4db4e244ba50bb188b209700dbad63f2 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 9.4E-113 T 25-04-2017 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS23655 e1d0b5b06dce88a2eae1b5f02e1a6dc7 223 Gene3D G3DSA:3.60.20.10 93 198 7.2E-4 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS23655 e1d0b5b06dce88a2eae1b5f02e1a6dc7 223 Pfam PF11769 Protein of unknown function (DUF3313) 18 215 9.9E-52 T 25-04-2017 IPR021747 Protein of unknown function DUF3313 A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 Pfam PF02261 Aspartate decarboxylase 1 114 1.8E-48 T 25-04-2017 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.3E-60 T 25-04-2017 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 SUPERFAMILY SSF50692 1 115 1.74E-47 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 Gene3D G3DSA:2.40.40.20 1 124 3.5E-55 T 25-04-2017 A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 9.0E-63 T 25-04-2017 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 PIRSF PIRSF006246 1 125 1.7E-53 T 25-04-2017 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 A4U88_RS20410 98d031c0b48a7afefd9350df0ae7802a 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 71.1 T 25-04-2017 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 SMART SM00345 25 84 2.5E-12 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.4E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.4E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 SUPERFAMILY SSF53383 126 486 4.18E-84 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 Pfam PF00155 Aminotransferase class I and II 156 478 1.2E-23 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 Gene3D G3DSA:3.40.640.10 165 371 6.4E-52 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 Gene3D G3DSA:3.90.1150.10 372 487 1.2E-6 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 SUPERFAMILY SSF46785 18 86 1.95E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 84 1.6E-13 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS21095 9a4278b21c820c10b60cf0cb44e85588 490 Gene3D G3DSA:1.10.10.10 16 85 2.0E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02680 e0dc0e68b58f24c42ef4da84c5b0229f 254 SUPERFAMILY SSF56529 38 246 1.28E-74 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02680 e0dc0e68b58f24c42ef4da84c5b0229f 254 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 246 6.0E-120 T 25-04-2017 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 A4U88_RS02680 e0dc0e68b58f24c42ef4da84c5b0229f 254 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 46 243 2.8E-61 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02680 e0dc0e68b58f24c42ef4da84c5b0229f 254 Gene3D G3DSA:3.90.850.10 39 248 9.0E-81 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 367 199.4 T 25-04-2017 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 7 363 1.9E-152 T 25-04-2017 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 Gene3D G3DSA:3.90.1150.10 256 361 8.8E-48 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 Pfam PF00266 Aminotransferase class-V 41 317 5.1E-26 T 25-04-2017 IPR000192 Aminotransferase class V domain A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 SUPERFAMILY SSF53383 6 363 5.76E-85 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 Gene3D G3DSA:3.40.640.10 18 255 1.8E-55 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 4 365 6.1E-187 T 25-04-2017 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 A4U88_RS10375 14444a0fe518aa65e099ac6528725960 367 PIRSF PIRSF000524 1 366 2.5E-58 T 25-04-2017 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 A4U88_RS12165 f55ec5c5900d96cc2e2c9a15dac80568 318 SMART SM00062 29 245 1.7E-22 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS12165 f55ec5c5900d96cc2e2c9a15dac80568 318 Gene3D G3DSA:3.40.190.10 127 233 1.5E-32 T 25-04-2017 A4U88_RS12165 f55ec5c5900d96cc2e2c9a15dac80568 318 SUPERFAMILY SSF53850 26 260 3.56E-53 T 25-04-2017 A4U88_RS12165 f55ec5c5900d96cc2e2c9a15dac80568 318 Gene3D G3DSA:3.40.190.10 54 126 4.4E-6 T 25-04-2017 A4U88_RS12165 f55ec5c5900d96cc2e2c9a15dac80568 318 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 30 308 3.0E-73 T 25-04-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 A4U88_RS12165 f55ec5c5900d96cc2e2c9a15dac80568 318 Pfam PF09084 NMT1/THI5 like 56 249 8.9E-16 T 25-04-2017 IPR015168 SsuA/THI5-like A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 Pfam PF04324 BFD-like [2Fe-2S] binding domain 433 484 4.9E-9 T 25-04-2017 IPR007419 BFD-like [2Fe-2S]-binding domain A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 Gene3D G3DSA:3.50.50.60 9 256 3.5E-45 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 Pfam PF01266 FAD dependent oxidoreductase 11 360 1.8E-51 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 539 5.1E-265 T 25-04-2017 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 15 32 - T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 SUPERFAMILY SSF51905 10 323 2.33E-46 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 10 22 7.2E-22 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 51 7.2E-22 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 7.2E-22 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 33 7.2E-22 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00760 b64a0c9c22935b5aac6b46d8cb145cdb 549 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 312 318 7.2E-22 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.9E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.9E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.9E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 2.7E-100 T 25-04-2017 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 6.1E-66 T 25-04-2017 A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 Gene3D G3DSA:3.40.50.720 1 243 1.6E-87 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 SUPERFAMILY SSF51735 4 243 1.11E-85 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.1E-5 T 25-04-2017 A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 4.0E-49 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.0E-49 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 4.0E-49 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 4.0E-49 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 4.0E-49 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09205 85c6f2248e5dcdbf1bec9bdcc4a55172 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 4.0E-49 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Pfam PF01225 Mur ligase family, catalytic domain 25 102 2.6E-12 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Gene3D G3DSA:3.40.1390.10 4 104 3.4E-33 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Gene3D G3DSA:3.90.190.20 343 484 1.9E-56 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 4 491 34.74 T 25-04-2017 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Pfam PF08245 Mur ligase middle domain 114 318 1.5E-51 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Gene3D G3DSA:3.40.1190.10 106 342 2.1E-80 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 SUPERFAMILY SSF63418 5 103 8.24E-24 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 SUPERFAMILY SSF53244 339 491 9.16E-50 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 SUPERFAMILY SSF53623 105 337 5.1E-79 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 22 491 6.0E-167 T 25-04-2017 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 A4U88_RS03340 0c56ae3706c868ccadc73e156ea2d004 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 339 425 1.5E-24 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS22405 58c6e880ef97437460023af657dac8bf 279 Gene3D G3DSA:1.10.287.460 40 143 7.3E-42 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS22405 58c6e880ef97437460023af657dac8bf 279 SUPERFAMILY SSF54534 50 257 1.71E-63 T 25-04-2017 A4U88_RS22405 58c6e880ef97437460023af657dac8bf 279 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 168 254 3.7E-28 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS22405 58c6e880ef97437460023af657dac8bf 279 Gene3D G3DSA:3.10.50.40 144 257 9.4E-44 T 25-04-2017 A4U88_RS22405 58c6e880ef97437460023af657dac8bf 279 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 40 160 4.9E-37 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 SMART SM00354 1 73 7.4E-32 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 SUPERFAMILY SSF53822 60 314 1.0E-41 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 311 5.4E-16 T 25-04-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 50 6.6E-19 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 SUPERFAMILY SSF47413 2 58 8.7E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 Gene3D G3DSA:1.10.260.40 1 55 1.1E-24 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 328 2.7E-150 T 25-04-2017 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 Gene3D G3DSA:3.40.50.2300 165 331 2.4E-37 T 25-04-2017 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 25-04-2017 A4U88_RS03305 9533f287b0d08fa3580133fa83e0334b 334 Gene3D G3DSA:3.40.50.2300 56 164 2.3E-31 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 Gene3D G3DSA:2.30.38.10 384 456 1.6E-18 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 Gene3D G3DSA:3.30.300.30 457 560 1.2E-22 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 Gene3D G3DSA:3.40.50.980 45 183 2.5E-26 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 Gene3D G3DSA:3.40.50.980 184 348 7.1E-32 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 Pfam PF00501 AMP-binding enzyme 47 464 3.4E-74 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 SUPERFAMILY SSF56801 19 353 2.35E-100 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 SUPERFAMILY SSF56801 380 564 2.35E-100 T 25-04-2017 A4U88_RS16065 54b75f95c49cdd40e6c9d32315f1bd4a 579 Pfam PF14535 AMP-binding enzyme C-terminal domain 465 555 9.9E-7 T 25-04-2017 IPR028154 AMP-dependent ligase, C-terminal A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 PRINTS PR00313 NodO calcium binding signature 357 366 3.8E-9 T 25-04-2017 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 PRINTS PR00313 NodO calcium binding signature 348 356 3.8E-9 T 25-04-2017 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 PRINTS PR00313 NodO calcium binding signature 318 329 3.8E-9 T 25-04-2017 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 PRINTS PR00313 NodO calcium binding signature 339 347 3.8E-9 T 25-04-2017 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 Gene3D G3DSA:3.40.390.10 24 238 4.8E-45 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 Pfam PF00413 Matrixin 55 196 1.1E-10 T 25-04-2017 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 SUPERFAMILY SSF55486 8 234 1.22E-50 T 25-04-2017 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 SMART SM00235 47 216 7.1E-12 T 25-04-2017 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 SUPERFAMILY SSF51120 238 457 1.7E-43 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 PIRSF PIRSF001205 1 460 1.1E-173 T 25-04-2017 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 Pfam PF08548 Peptidase M10 serralysin C terminal 236 460 3.3E-73 T 25-04-2017 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 A4U88_RS15945 db766c5f922e22e9d523760985345c4b 460 Gene3D G3DSA:2.150.10.10 250 447 2.3E-31 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 92.093 T 25-04-2017 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 Pfam PF10415 Fumarase C C-terminus 408 461 9.9E-27 T 25-04-2017 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 Gene3D G3DSA:1.20.200.10 139 403 5.3E-106 T 25-04-2017 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 Gene3D G3DSA:1.10.275.10 4 138 1.2E-59 T 25-04-2017 IPR024083 Fumarase/histidase, N-terminal A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 25-04-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 9.8E-34 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 9.8E-34 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 9.8E-34 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 9.8E-34 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 1.1E-5 T 25-04-2017 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 1.1E-5 T 25-04-2017 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 Pfam PF00206 Lyase 12 342 2.4E-121 T 25-04-2017 IPR022761 Fumarate lyase, N-terminal A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 4 461 1.4E-245 T 25-04-2017 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 SUPERFAMILY SSF48557 4 459 1.49E-161 T 25-04-2017 IPR008948 L-Aspartase-like GO:0003824 A4U88_RS11105 f98f193b7e2bd13c6a82761406b92a7c 465 Gene3D G3DSA:1.10.40.30 405 462 2.3E-33 T 25-04-2017 A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 169 3.7E-85 T 25-04-2017 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 SMART SM00852 14 158 4.0E-34 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 25-04-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 152 1.0E-38 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 SUPERFAMILY SSF53218 7 168 4.32E-50 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 PIRSF PIRSF006443 1 166 5.9E-65 T 25-04-2017 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 Gene3D G3DSA:3.40.980.10 8 169 6.7E-54 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS06305 b24cb2701abbcc58eac70f1f37b82e34 171 Pfam PF00994 Probable molybdopterin binding domain 14 156 1.5E-36 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS00995 64eb6ab44e69283ec969ec80dabe5934 183 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 163 19.79 T 25-04-2017 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 A4U88_RS00995 64eb6ab44e69283ec969ec80dabe5934 183 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 3.2E-32 T 25-04-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 A4U88_RS00995 64eb6ab44e69283ec969ec80dabe5934 183 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 3.2E-32 T 25-04-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 A4U88_RS00995 64eb6ab44e69283ec969ec80dabe5934 183 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 3.2E-32 T 25-04-2017 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 A4U88_RS00995 64eb6ab44e69283ec969ec80dabe5934 183 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 4.8E-32 T 25-04-2017 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 208 374 1.7E-15 T 25-04-2017 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 374 2.5E-207 T 25-04-2017 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 80.337 T 25-04-2017 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 25-04-2017 IPR030390 RNA methyltransferase TrmA, active site A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 SUPERFAMILY SSF53335 3 374 1.4E-52 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 Gene3D G3DSA:3.40.50.150 179 374 4.3E-50 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08085 eae349f20137cf2cf3d9cac069a045c8 375 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 25-04-2017 IPR030391 RNA methyltransferase TrmA, conserved site A4U88_RS16300 af1775c6a6915946597e6c3849771a8b 316 Gene3D G3DSA:3.30.70.270 164 313 6.9E-20 T 25-04-2017 A4U88_RS16300 af1775c6a6915946597e6c3849771a8b 316 Pfam PF00990 Diguanylate cyclase, GGDEF domain 163 313 1.0E-18 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS16300 af1775c6a6915946597e6c3849771a8b 316 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 160 313 1.0E-14 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS16300 af1775c6a6915946597e6c3849771a8b 316 SMART SM00267 151 315 2.4E-7 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS16300 af1775c6a6915946597e6c3849771a8b 316 SUPERFAMILY SSF55073 167 314 1.02E-18 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS14575 2604f728ab650cd3a516581a5a1ec419 71 Gene3D G3DSA:1.20.1280.40 2 70 1.3E-28 T 25-04-2017 IPR007985 Haemolysin expression modulating, HHA A4U88_RS14575 2604f728ab650cd3a516581a5a1ec419 71 Pfam PF05321 Haemolysin expression modulating protein 9 67 1.8E-29 T 25-04-2017 IPR007985 Haemolysin expression modulating, HHA A4U88_RS14575 2604f728ab650cd3a516581a5a1ec419 71 SUPERFAMILY SSF68989 4 69 1.06E-20 T 25-04-2017 IPR007985 Haemolysin expression modulating, HHA A4U88_RS06275 02fbfa891845ede99f241a9d2d29f86c 224 PIRSF PIRSF006755 1 223 7.8E-85 T 25-04-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 A4U88_RS06275 02fbfa891845ede99f241a9d2d29f86c 224 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 211 31.051 T 25-04-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 A4U88_RS06275 02fbfa891845ede99f241a9d2d29f86c 224 Pfam PF13500 AAA domain 5 211 1.5E-39 T 25-04-2017 A4U88_RS06275 02fbfa891845ede99f241a9d2d29f86c 224 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 8.7E-67 T 25-04-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 A4U88_RS06275 02fbfa891845ede99f241a9d2d29f86c 224 Gene3D G3DSA:3.40.50.300 3 219 8.2E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06275 02fbfa891845ede99f241a9d2d29f86c 224 SUPERFAMILY SSF52540 3 217 2.56E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 Gene3D G3DSA:3.90.25.10 199 218 6.0E-21 T 25-04-2017 A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 Gene3D G3DSA:3.90.25.10 260 331 6.0E-21 T 25-04-2017 A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 Gene3D G3DSA:3.40.50.720 1 198 2.8E-59 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 4.5E-28 T 25-04-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 4.5E-28 T 25-04-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 4.5E-28 T 25-04-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 4.5E-28 T 25-04-2017 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 Reactome: R-HSA-5609977|Reactome: R-HSA-70370 A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 SUPERFAMILY SSF51735 1 333 3.47E-91 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13220 3dd5e00cc05aa2838f34f49c3c038ba6 336 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.2E-57 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 Pfam PF03466 LysR substrate binding domain 89 288 1.1E-37 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.3E-11 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.3E-11 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.3E-11 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 SUPERFAMILY SSF53850 89 294 1.18E-33 T 25-04-2017 A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 SUPERFAMILY SSF46785 4 86 4.27E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 Gene3D G3DSA:3.40.190.10 94 175 1.0E-32 T 25-04-2017 A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 Gene3D G3DSA:1.10.10.10 4 85 6.5E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 Gene3D G3DSA:3.40.190.10 176 268 7.6E-35 T 25-04-2017 A4U88_RS01475 ab01a1b91480af22850d5445e3620695 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.0E-25 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 Gene3D G3DSA:1.20.58.410 6 93 1.2E-19 T 25-04-2017 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 SMART SM00937 63 178 2.8E-70 T 25-04-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 Pfam PF00472 RF-1 domain 216 321 5.0E-41 T 25-04-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 357 1.6E-174 T 25-04-2017 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 Pfam PF03462 PCRF domain 12 203 1.7E-75 T 25-04-2017 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 Gene3D G3DSA:3.30.160.20 215 288 1.5E-35 T 25-04-2017 IPR014720 Double-stranded RNA-binding domain A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 SUPERFAMILY SSF75620 12 353 2.75E-136 T 25-04-2017 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 25-04-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 A4U88_RS09710 d86273a764039863dd86ada78aaf1807 361 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.812 T 25-04-2017 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 Gene3D G3DSA:3.90.1150.10 427 586 1.9E-65 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 Gene3D G3DSA:3.90.100.10 587 709 2.3E-38 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 4.6E-46 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 PIRSF PIRSF009393 1 712 3.5E-284 T 25-04-2017 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 3.4E-27 T 25-04-2017 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 3.0E-196 T 25-04-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 Gene3D G3DSA:3.40.640.10 130 423 1.8E-100 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 SUPERFAMILY SSF55904 567 708 1.27E-44 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 25-04-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 A4U88_RS19170 33910bdb82a349e07d791709a6a504ff 712 SUPERFAMILY SSF53383 130 562 2.79E-105 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS05115 6325b25107f7a47674a294f390e3f838 46 SUPERFAMILY SSF57840 8 41 8.89E-14 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS05115 6325b25107f7a47674a294f390e3f838 46 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 3.6E-9 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS05115 6325b25107f7a47674a294f390e3f838 46 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 41 0.003 T 25-04-2017 A4U88_RS05115 6325b25107f7a47674a294f390e3f838 46 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS05115 6325b25107f7a47674a294f390e3f838 46 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.111 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS05115 6325b25107f7a47674a294f390e3f838 46 Pfam PF00444 Ribosomal protein L36 1 41 3.8E-17 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 Gene3D G3DSA:3.40.50.720 10 163 3.3E-40 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 154 277 1.9E-11 T 25-04-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 12 142 1.8E-28 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 Gene3D G3DSA:3.30.360.10 332 383 5.6E-22 T 25-04-2017 A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 Gene3D G3DSA:3.30.360.10 164 286 5.6E-22 T 25-04-2017 A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 SUPERFAMILY SSF51735 10 173 7.71E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10015 5a80f7ab04b0adbe1ec674481c10aecd 390 SUPERFAMILY SSF55347 149 326 3.11E-29 T 25-04-2017 A4U88_RS18355 17c627c3d6d329492dcf5c6e98b918f9 73 Gene3D G3DSA:2.10.290.10 1 71 3.5E-32 T 25-04-2017 IPR029037 YfgJ-like A4U88_RS18355 17c627c3d6d329492dcf5c6e98b918f9 73 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 3.0E-19 T 25-04-2017 IPR010807 Protein of unknown function DUF1407 A4U88_RS18355 17c627c3d6d329492dcf5c6e98b918f9 73 SUPERFAMILY SSF161187 1 70 1.31E-27 T 25-04-2017 IPR029037 YfgJ-like A4U88_RS18355 17c627c3d6d329492dcf5c6e98b918f9 73 Pfam PF07191 zinc-ribbons 4 68 8.6E-30 T 25-04-2017 IPR010807 Protein of unknown function DUF1407 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 Gene3D G3DSA:3.40.50.1820 416 656 8.3E-41 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 Gene3D G3DSA:2.130.10.120 76 407 2.6E-100 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 SUPERFAMILY SSF50993 1 406 1.54E-88 T 25-04-2017 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 404 2.6E-103 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 530 550 7.1E-56 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 588 603 7.1E-56 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 446 464 7.1E-56 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 472 496 7.1E-56 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 606 628 7.1E-56 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 500 519 7.1E-56 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 SUPERFAMILY SSF53474 414 655 6.25E-48 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS09390 706dbb2bc598ce7a067dd0d42acd982d 677 Pfam PF00326 Prolyl oligopeptidase family 461 674 1.1E-69 T 25-04-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 213 224 - T 25-04-2017 IPR033116 Serine proteases, trypsin family, serine active site A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 SMART SM00020 40 266 0.001 T 25-04-2017 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 Gene3D G3DSA:2.40.10.10 152 240 3.8E-9 T 25-04-2017 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 76 81 - T 25-04-2017 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 Gene3D G3DSA:2.40.10.10 50 151 5.9E-14 T 25-04-2017 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 Pfam PF00089 Trypsin 45 240 4.1E-14 T 25-04-2017 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 212 224 9.6E-6 T 25-04-2017 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 66 81 9.6E-6 T 25-04-2017 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 136 150 9.6E-6 T 25-04-2017 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 A4U88_RS12575 6719484d8c4dfad67f9474d6cedfa911 270 SUPERFAMILY SSF50494 14 261 1.11E-29 T 25-04-2017 IPR009003 Peptidase S1, PA clan A4U88_RS01360 18e7dfe8cf817bf2812cf626a0ac6c06 457 Pfam PF00756 Putative esterase 203 428 1.9E-34 T 25-04-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 A4U88_RS01360 18e7dfe8cf817bf2812cf626a0ac6c06 457 Gene3D G3DSA:2.60.40.10 12 162 2.4E-46 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS01360 18e7dfe8cf817bf2812cf626a0ac6c06 457 SUPERFAMILY SSF81296 16 170 3.36E-41 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS01360 18e7dfe8cf817bf2812cf626a0ac6c06 457 Pfam PF11806 Domain of unknown function (DUF3327) 46 175 1.1E-42 T 25-04-2017 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 A4U88_RS01360 18e7dfe8cf817bf2812cf626a0ac6c06 457 Gene3D G3DSA:3.40.50.1820 193 432 5.4E-65 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01360 18e7dfe8cf817bf2812cf626a0ac6c06 457 SUPERFAMILY SSF53474 188 430 3.49E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10550 219b8ecfee1af54d2a6e7628b9a8eed9 301 Pfam PF01522 Polysaccharide deacetylase 15 170 1.4E-14 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS10550 219b8ecfee1af54d2a6e7628b9a8eed9 301 Gene3D G3DSA:3.20.20.370 13 38 1.2E-35 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS10550 219b8ecfee1af54d2a6e7628b9a8eed9 301 Gene3D G3DSA:3.20.20.370 82 267 1.2E-35 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS10550 219b8ecfee1af54d2a6e7628b9a8eed9 301 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 296 65.023 T 25-04-2017 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 A4U88_RS10550 219b8ecfee1af54d2a6e7628b9a8eed9 301 SUPERFAMILY SSF88713 85 275 1.33E-32 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS10550 219b8ecfee1af54d2a6e7628b9a8eed9 301 SUPERFAMILY SSF88713 14 41 1.33E-32 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS02585 d7bc775232728301e6b156fbd16c7bed 446 Gene3D G3DSA:3.40.640.10 70 346 1.7E-78 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS02585 d7bc775232728301e6b156fbd16c7bed 446 Pfam PF00202 Aminotransferase class-III 28 442 5.1E-111 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS02585 d7bc775232728301e6b156fbd16c7bed 446 SUPERFAMILY SSF53383 27 443 1.06E-113 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS02585 d7bc775232728301e6b156fbd16c7bed 446 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 254 291 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS02585 d7bc775232728301e6b156fbd16c7bed 446 Gene3D G3DSA:3.90.1150.10 11 68 1.5E-40 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS02585 d7bc775232728301e6b156fbd16c7bed 446 Gene3D G3DSA:3.90.1150.10 348 445 1.5E-40 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Gene3D G3DSA:3.30.70.260 663 738 8.7E-28 T 25-04-2017 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Pfam PF13291 ACT domain 663 739 2.1E-18 T 25-04-2017 IPR002912 ACT domain GO:0008152|GO:0016597 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Pfam PF13328 HD domain 46 191 1.4E-42 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Gene3D G3DSA:3.10.20.30 405 466 7.3E-26 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 SUPERFAMILY SSF81301 196 409 5.56E-64 T 25-04-2017 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 SUPERFAMILY SSF55021 664 740 1.34E-14 T 25-04-2017 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 SUPERFAMILY SSF81271 398 464 6.05E-22 T 25-04-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 SMART SM00954 251 361 6.2E-66 T 25-04-2017 IPR007685 RelA/SpoT GO:0015969 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 1.3E-187 T 25-04-2017 IPR004811 RelA/SpoT family GO:0015969 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 SUPERFAMILY SSF109604 27 207 2.26E-46 T 25-04-2017 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 1.5E-36 T 25-04-2017 IPR007685 RelA/SpoT GO:0015969 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Pfam PF02824 TGS domain 405 464 3.0E-21 T 25-04-2017 IPR004095 TGS KEGG: 00970+6.1.1.3 A4U88_RS03520 909da355b779bf1792ff2e5d33658505 743 Gene3D G3DSA:3.30.460.10 194 341 2.5E-50 T 25-04-2017 A4U88_RS23580 c067170446d0fd7bf63bc81ef4dad482 336 SUPERFAMILY SSF56655 1 325 9.77E-111 T 25-04-2017 A4U88_RS23580 c067170446d0fd7bf63bc81ef4dad482 336 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 322 5.9E-135 T 25-04-2017 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 A4U88_RS23580 c067170446d0fd7bf63bc81ef4dad482 336 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 330 2.2E-178 T 25-04-2017 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 A4U88_RS23580 c067170446d0fd7bf63bc81ef4dad482 336 PIRSF PIRSF004532 1 332 2.1E-142 T 25-04-2017 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 A4U88_RS23580 c067170446d0fd7bf63bc81ef4dad482 336 Gene3D G3DSA:3.30.540.10 1 172 9.8E-71 T 25-04-2017 A4U88_RS23580 c067170446d0fd7bf63bc81ef4dad482 336 Gene3D G3DSA:3.30.540.10 173 328 2.2E-48 T 25-04-2017 A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 SUPERFAMILY SSF52540 40 88 2.31E-10 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 SUPERFAMILY SSF52540 573 598 2.31E-10 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 SUPERFAMILY SSF52540 477 542 2.31E-10 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 SUPERFAMILY SSF52540 13 232 1.83E-26 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 SMART SM00491 474 603 4.6E-54 T 25-04-2017 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 SMART SM00487 16 342 0.0014 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 Pfam PF13307 Helicase C-terminal domain 459 616 5.0E-35 T 25-04-2017 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 Pfam PF00270 DEAD/DEAH box helicase 29 105 1.1E-4 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 Gene3D G3DSA:3.40.50.300 450 597 1.1E-6 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 Gene3D G3DSA:3.40.50.300 4 116 1.2E-19 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 Gene3D G3DSA:3.40.50.300 190 234 1.2E-19 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13515 998bde334d998c9f246af60260f27d83 638 Pfam PF06733 DEAD_2 180 247 5.9E-5 T 25-04-2017 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 SUPERFAMILY SSF51197 2 102 2.47E-35 T 25-04-2017 A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 Pfam PF09313 Domain of unknown function (DUF1971) 9 89 1.5E-29 T 25-04-2017 IPR015392 Domain of unknown function DUF1971 A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 Gene3D G3DSA:2.60.120.10 1 109 2.9E-46 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 Gene3D G3DSA:3.40.50.150 110 285 4.4E-28 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 SUPERFAMILY SSF53335 97 268 3.99E-27 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 49 286 8.2E-105 T 25-04-2017 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 PIRSF PIRSF005215 1 287 4.2E-131 T 25-04-2017 IPR014431 Tellurite resistance methyltransferase, TehB type-2 A4U88_RS04465 82fd0d41407e0e5bcdee3cdedeb6906f 287 Pfam PF03848 Tellurite resistance protein TehB 91 283 6.8E-96 T 25-04-2017 IPR015985 Tellurite resistance methyltransferase TehB-like domain A4U88_RS00440 f9c1eda3729d6062cf48c20abe55dc2e 300 Gene3D G3DSA:1.10.3720.10 88 296 2.3E-31 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00440 f9c1eda3729d6062cf48c20abe55dc2e 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 1.0E-13 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS00440 f9c1eda3729d6062cf48c20abe55dc2e 300 SUPERFAMILY SSF161098 93 280 1.83E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00440 f9c1eda3729d6062cf48c20abe55dc2e 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 2.9E-30 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13910 bded01c0d1a30dc11bde400ecf52bb52 148 SMART SM00749 28 91 2.1E-7 T 25-04-2017 IPR014004 Transport-associated and nodulation domain, bacteria A4U88_RS13910 bded01c0d1a30dc11bde400ecf52bb52 148 SMART SM00257 98 147 1.0E-13 T 25-04-2017 IPR018392 LysM domain A4U88_RS13910 bded01c0d1a30dc11bde400ecf52bb52 148 Pfam PF04972 BON domain 26 90 4.1E-11 T 25-04-2017 IPR007055 BON domain A4U88_RS13910 bded01c0d1a30dc11bde400ecf52bb52 148 Pfam PF01476 LysM domain 99 147 1.5E-12 T 25-04-2017 IPR018392 LysM domain A4U88_RS13910 bded01c0d1a30dc11bde400ecf52bb52 148 Gene3D G3DSA:3.10.350.10 97 147 1.1E-11 T 25-04-2017 IPR018392 LysM domain A4U88_RS13910 bded01c0d1a30dc11bde400ecf52bb52 148 SUPERFAMILY SSF54106 97 147 6.67E-8 T 25-04-2017 IPR018392 LysM domain A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 Pfam PF00875 DNA photolyase 5 173 1.9E-42 T 25-04-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 345 364 - T 25-04-2017 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 PRINTS PR00147 DNA photolyase signature 384 398 1.3E-30 T 25-04-2017 IPR002081 Cryptochrome/DNA photolyase class 1 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 PRINTS PR00147 DNA photolyase signature 325 341 1.3E-30 T 25-04-2017 IPR002081 Cryptochrome/DNA photolyase class 1 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 PRINTS PR00147 DNA photolyase signature 144 160 1.3E-30 T 25-04-2017 IPR002081 Cryptochrome/DNA photolyase class 1 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 PRINTS PR00147 DNA photolyase signature 345 363 1.3E-30 T 25-04-2017 IPR002081 Cryptochrome/DNA photolyase class 1 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 SUPERFAMILY SSF52425 3 195 1.44E-51 T 25-04-2017 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-1368108|Reactome: R-HSA-400253 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 SUPERFAMILY SSF48173 199 472 1.3E-107 T 25-04-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 Pfam PF03441 FAD binding domain of DNA photolyase 275 469 1.9E-82 T 25-04-2017 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-1368108|Reactome: R-HSA-400253 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 Gene3D G3DSA:1.10.579.10 286 472 7.1E-78 T 25-04-2017 A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 25-04-2017 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 Gene3D G3DSA:3.40.50.620 2 148 3.4E-42 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05895 dd7e88b1fddf4b7a558c6d817f8718d8 476 Gene3D G3DSA:1.25.40.80 149 285 7.2E-44 T 25-04-2017 A4U88_RS12190 7ae6f89176401d8862e4a306a61289f2 157 PIRSF PIRSF021700 1 157 1.5E-58 T 25-04-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase A4U88_RS12190 7ae6f89176401d8862e4a306a61289f2 157 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 117 7.7E-36 T 25-04-2017 IPR028973 PhnB-like A4U88_RS12190 7ae6f89176401d8862e4a306a61289f2 157 Gene3D G3DSA:3.10.180.10 1 129 7.0E-40 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS12190 7ae6f89176401d8862e4a306a61289f2 157 SUPERFAMILY SSF54593 3 155 5.93E-43 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 SUPERFAMILY SSF53335 88 335 1.42E-44 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 Gene3D G3DSA:3.40.50.150 90 336 5.0E-46 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 Gene3D G3DSA:1.10.10.10 4 76 2.4E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 Pfam PF16864 Dimerisation domain 11 89 2.7E-12 T 25-04-2017 IPR031725 Acetylserotonin O-methyltransferase, dimerisation domain A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 SUPERFAMILY SSF46785 7 87 9.62E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 Pfam PF00891 O-methyltransferase 100 324 6.5E-33 T 25-04-2017 IPR001077 O-methyltransferase, family 2 GO:0008171 A4U88_RS05340 166bee67f1241b83d26566712f52ac1b 338 PIRSF PIRSF005739 3 336 8.5E-22 T 25-04-2017 IPR016461 O-methyltransferase COMT-type GO:0008168 A4U88_RS05315 930bb219c83d9a255b4eaa94be031dd9 104 Pfam PF11639 REDY-like protein HapK 1 104 4.2E-32 T 25-04-2017 IPR021667 REDY-like protein HapK A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 30 450 5.4E-113 T 25-04-2017 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 SUPERFAMILY SSF56801 9 457 1.96E-96 T 25-04-2017 A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 Gene3D G3DSA:3.40.50.980 152 294 1.1E-22 T 25-04-2017 A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 Gene3D G3DSA:3.30.300.30 362 459 2.5E-17 T 25-04-2017 A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 Pfam PF00501 AMP-binding enzyme 10 360 1.5E-53 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 ProSitePatterns PS00455 Putative AMP-binding domain signature. 143 154 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 Gene3D G3DSA:3.40.50.980 10 151 1.9E-20 T 25-04-2017 A4U88_RS16735 b6364a4977ca32d9313d64983a69de8d 461 Gene3D G3DSA:2.30.38.10 295 355 1.7E-6 T 25-04-2017 A4U88_RS16650 b58bb0d5ad74eb855af1d52d0d20b388 134 ProDom PD076485 YNEG CYTOPLASMIC ECS2130 STY1535 6 114 4.0E-37 T 25-04-2017 IPR020378 Protein of unknown function DUF4186 A4U88_RS16650 b58bb0d5ad74eb855af1d52d0d20b388 134 Pfam PF13811 Domain of unknown function (DUF4186) 8 113 3.3E-49 T 25-04-2017 IPR020378 Protein of unknown function DUF4186 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 PIRSF PIRSF001394 30 548 1.8E-231 T 25-04-2017 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 Pfam PF05681 Fumarate hydratase (Fumerase) 51 325 1.3E-84 T 25-04-2017 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 372 537 1.8E-62 T 25-04-2017 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 74 323 2.2E-30 T 25-04-2017 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 25-04-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 Gene3D G3DSA:3.20.130.10 348 536 3.4E-75 T 25-04-2017 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 SUPERFAMILY SSF117457 361 536 2.22E-62 T 25-04-2017 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 A4U88_RS20530 8c15040869b6c8e67aff1c5e51c81596 548 Pfam PF05683 Fumarase C-terminus 332 537 1.9E-93 T 25-04-2017 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 38 54 - T 25-04-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 5 549 2.4E-244 T 25-04-2017 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 241 254 - T 25-04-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 SUPERFAMILY SSF51569 20 328 1.08E-97 T 25-04-2017 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 Pfam PF00682 HMGL-like 31 311 1.7E-71 T 25-04-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 SMART SM00917 422 554 7.1E-23 T 25-04-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 Pfam PF08502 LeuA allosteric (dimerisation) domain 423 553 1.3E-19 T 25-04-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 6 555 53.431 T 25-04-2017 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 SUPERFAMILY SSF89000 388 436 2.98E-14 T 25-04-2017 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 SUPERFAMILY SSF110921 445 552 9.68E-26 T 25-04-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS09045 5d0e37f803ca89e44799cc58ae3bc9aa 562 Gene3D G3DSA:3.20.20.70 8 394 5.3E-144 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 SUPERFAMILY SSF50249 3 68 2.4E-25 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 PRINTS PR00050 Cold shock protein signature 6 21 7.8E-17 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 PRINTS PR00050 Cold shock protein signature 42 60 7.8E-17 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 PRINTS PR00050 Cold shock protein signature 27 36 7.8E-17 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 Gene3D G3DSA:2.40.50.140 4 67 8.4E-31 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 25-04-2017 IPR019844 Cold-shock conserved site A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 SMART SM00357 5 69 9.4E-30 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 PIRSF PIRSF002599 1 69 1.2E-24 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS13745 4238bbf9a2fdf67b6787891dbb37a0de 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 7.9E-32 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 SUPERFAMILY SSF55811 236 361 6.22E-24 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Gene3D G3DSA:1.10.1670.10 140 240 1.1E-40 T 25-04-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 SMART SM00478 55 206 1.8E-52 T 25-04-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 21 291 1.1E-124 T 25-04-2017 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 SUPERFAMILY SSF48150 18 241 5.81E-78 T 25-04-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Gene3D G3DSA:3.90.79.10 245 362 3.0E-22 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Pfam PF14815 NUDIX domain 249 359 1.3E-21 T 25-04-2017 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 208 224 4.6E-4 T 25-04-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 208 224 - T 25-04-2017 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 ProSitePatterns PS01155 Endonuclease III family signature. 118 147 - T 25-04-2017 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 SMART SM00525 207 227 2.9E-4 T 25-04-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 52 184 4.4E-22 T 25-04-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Pfam PF00633 Helix-hairpin-helix motif 116 143 1.0E-7 T 25-04-2017 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 A4U88_RS20625 e6e370299b88aa7f70f497dd28201ab6 381 Gene3D G3DSA:1.10.340.30 38 139 8.7E-46 T 25-04-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 SUPERFAMILY SSF53474 3 258 3.1E-55 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 Pfam PF00561 alpha/beta hydrolase fold 16 117 3.4E-17 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 84 97 1.5E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 204 218 1.5E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 1.5E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 1.5E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00412 Epoxide hydrolase signature 234 256 9.0E-10 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00412 Epoxide hydrolase signature 98 111 9.0E-10 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 PRINTS PR00412 Epoxide hydrolase signature 39 54 9.0E-10 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS06620 36ffaafc38381752bb235bc9bf1d5ec1 266 Gene3D G3DSA:3.40.50.1820 2 258 7.6E-53 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 SMART SM00928 337 382 2.7E-21 T 25-04-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 14 424 7.0E-201 T 25-04-2017 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 SUPERFAMILY SSF140490 335 424 1.02E-30 T 25-04-2017 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 175 190 - T 25-04-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 55 227 1.8E-50 T 25-04-2017 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 350 361 - T 25-04-2017 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 340 422 1.4E-26 T 25-04-2017 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 SUPERFAMILY SSF142019 17 247 2.75E-85 T 25-04-2017 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 Pfam PF10531 SLBB domain 254 296 2.3E-7 T 25-04-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16850 291b64e69a786c6eddaf43ed65a7b643 448 SUPERFAMILY SSF142984 249 331 3.66E-20 T 25-04-2017 A4U88_RS20320 28eba10bca80f2639aca5154d37134b7 51 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 11 30 - T 25-04-2017 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 A4U88_RS20320 28eba10bca80f2639aca5154d37134b7 51 Pfam PF01848 Hok/gef family 8 47 2.1E-18 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS20320 28eba10bca80f2639aca5154d37134b7 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 6 24 1.1E-12 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS20320 28eba10bca80f2639aca5154d37134b7 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 26 48 1.1E-12 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS20320 28eba10bca80f2639aca5154d37134b7 51 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 2 49 2.0E-9 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 Gene3D G3DSA:3.40.930.10 494 632 8.5E-44 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 SUPERFAMILY SSF55804 494 632 1.23E-41 T 25-04-2017 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 Pfam PF02378 Phosphotransferase system, EIIC 18 278 2.2E-19 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 537 553 - T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 348 7.4E-186 T 25-04-2017 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 Gene3D G3DSA:3.40.50.10370 376 469 3.5E-41 T 25-04-2017 IPR029503 Phosphotransferase system EIIB component, mannitol-specific GO:0009401|GO:0022872 A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 SUPERFAMILY SSF52794 377 466 1.57E-23 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 494 631 1.8E-33 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS00145 d48c21ca7ee08a9f3421e76ebf04c1b1 637 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 379 455 4.8E-10 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 Pfam PF03466 LysR substrate binding domain 88 288 4.2E-39 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 5.9E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 Gene3D G3DSA:3.40.190.10 176 259 5.4E-7 T 25-04-2017 A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 SUPERFAMILY SSF46785 4 87 4.67E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 Gene3D G3DSA:1.10.10.10 3 87 5.2E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 SUPERFAMILY SSF53850 89 288 8.51E-39 T 25-04-2017 A4U88_RS11610 969534cd4cc1535f555b09fd73a8a9e4 295 Gene3D G3DSA:3.40.190.10 103 175 3.4E-20 T 25-04-2017 A4U88_RS19340 502e208a8decbc9ed58ea52d136e9f62 454 Gene3D G3DSA:3.40.50.450 125 452 1.0E-125 T 25-04-2017 A4U88_RS19340 502e208a8decbc9ed58ea52d136e9f62 454 Pfam PF03641 Possible lysine decarboxylase 190 329 7.2E-34 T 25-04-2017 IPR031100 LOG family A4U88_RS19340 502e208a8decbc9ed58ea52d136e9f62 454 SUPERFAMILY SSF102405 119 330 9.31E-43 T 25-04-2017 A4U88_RS19340 502e208a8decbc9ed58ea52d136e9f62 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 453 1.1E-56 T 25-04-2017 IPR021826 Protein of unknown function DUF3412 A4U88_RS19340 502e208a8decbc9ed58ea52d136e9f62 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 8.5E-47 T 25-04-2017 IPR027820 Domain of unknown function DUF4478 A4U88_RS19340 502e208a8decbc9ed58ea52d136e9f62 454 Gene3D G3DSA:3.30.1850.10 2 113 2.9E-54 T 25-04-2017 IPR027820 Domain of unknown function DUF4478 A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 5.0E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 5.0E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.0E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.6E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.6E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.6E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.6E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.6E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.6E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 SUPERFAMILY SSF51735 1 252 1.17E-69 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 Gene3D G3DSA:3.40.50.720 1 251 4.7E-71 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14790 66514b49e8b2b96b8d52e8a33d83f77c 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 251 3.3E-54 T 25-04-2017 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 549 54.051 T 25-04-2017 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 2.4E-126 T 25-04-2017 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 528 2.1E-63 T 25-04-2017 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Gene3D G3DSA:1.10.1160.10 263 338 2.0E-37 T 25-04-2017 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Gene3D G3DSA:2.40.240.10 348 461 8.3E-49 T 25-04-2017 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 SUPERFAMILY SSF52374 10 337 2.52E-102 T 25-04-2017 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Gene3D G3DSA:2.40.240.10 462 547 8.1E-35 T 25-04-2017 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 SUPERFAMILY SSF50715 340 547 2.3E-80 T 25-04-2017 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Gene3D G3DSA:3.90.800.10 101 209 1.4E-48 T 25-04-2017 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Gene3D G3DSA:3.40.50.620 212 262 4.1E-43 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 Gene3D G3DSA:3.40.50.620 28 96 4.1E-43 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 9.4E-10 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 9.4E-10 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 9.4E-10 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 9.4E-10 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS05795 1bb0d568eb66e9a1bab779acee12f14c 554 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 551 0.0 T 25-04-2017 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Gene3D G3DSA:3.40.50.620 403 637 1.6E-135 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Gene3D G3DSA:3.40.50.620 17 205 1.6E-135 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Gene3D G3DSA:1.10.730.10 642 788 4.5E-43 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.461 T 25-04-2017 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 SUPERFAMILY SSF52374 403 647 1.6E-137 T 25-04-2017 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 SUPERFAMILY SSF52374 3 202 1.6E-137 T 25-04-2017 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 SUPERFAMILY SSF47323 652 929 4.67E-77 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 2.8E-33 T 25-04-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 2.8E-33 T 25-04-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 2.8E-33 T 25-04-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 2.8E-33 T 25-04-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 2.8E-33 T 25-04-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 4.0E-299 T 25-04-2017 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 641 2.9E-234 T 25-04-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 840 3.1E-28 T 25-04-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 2.0E-9 T 25-04-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 Gene3D G3DSA:3.90.740.10 206 389 6.0E-56 T 25-04-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 A4U88_RS03080 5408178aae76464ed497e8b84e7811b7 938 SUPERFAMILY SSF50677 204 403 6.38E-56 T 25-04-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 SMART SM00862 155 231 4.9E-28 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 SMART SM00448 5 116 7.0E-41 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 SUPERFAMILY SSF52172 3 178 5.3E-40 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 Gene3D G3DSA:3.40.50.2300 2 125 5.1E-41 T 25-04-2017 A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 Gene3D G3DSA:1.10.10.10 136 233 3.2E-37 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 Pfam PF00072 Response regulator receiver domain 7 116 2.1E-25 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS07325 82278c7b7e571e1ce141273b09bd91cf 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 2.4E-27 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 PRINTS PR00171 Sugar transporter signature 106 125 9.5E-23 T 25-04-2017 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 PRINTS PR00171 Sugar transporter signature 353 374 9.5E-23 T 25-04-2017 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 PRINTS PR00171 Sugar transporter signature 376 388 9.5E-23 T 25-04-2017 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 PRINTS PR00171 Sugar transporter signature 268 278 9.5E-23 T 25-04-2017 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 PRINTS PR00171 Sugar transporter signature 23 33 9.5E-23 T 25-04-2017 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 Pfam PF00083 Sugar (and other) transporter 16 457 2.4E-104 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 4 453 1.7E-106 T 25-04-2017 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 ProSitePatterns PS00217 Sugar transport proteins signature 2. 111 136 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 Gene3D G3DSA:1.20.1250.20 259 456 9.6E-20 T 25-04-2017 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 Gene3D G3DSA:1.20.1250.20 18 203 1.9E-28 T 25-04-2017 A4U88_RS22945 81c4a68b5af99f64e680306fb895e9c0 480 SUPERFAMILY SSF103473 6 455 3.01E-74 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.420.40 197 229 2.2E-33 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.420.40 319 361 2.2E-33 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.90.640.10 230 315 6.9E-32 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Pfam PF00012 Hsp70 protein 4 602 1.0E-264 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 138 158 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 198 208 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 469 485 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 54 62 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 334 350 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 365 385 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 PRINTS PR00301 70kDa heat shock protein signature 388 407 4.9E-78 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:2.60.34.10 390 531 1.6E-68 T 25-04-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 633 36.886 T 25-04-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 601 2.3E-291 T 25-04-2017 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF53067 4 183 5.94E-66 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.30.30 53 108 5.9E-28 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF100934 507 608 1.29E-16 T 25-04-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.420.40 4 52 3.3E-63 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:3.30.420.40 119 196 3.3E-63 T 25-04-2017 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF100920 384 540 4.32E-60 T 25-04-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 Gene3D G3DSA:1.20.1270.10 532 601 3.7E-27 T 25-04-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 A4U88_RS03050 27740668177aafad265d8b1ecafa65a1 637 SUPERFAMILY SSF53067 187 382 9.72E-68 T 25-04-2017 A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 SUPERFAMILY SSF50182 114 179 3.6E-17 T 25-04-2017 IPR010920 LSM domain A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 SUPERFAMILY SSF82861 28 112 3.53E-17 T 25-04-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 Pfam PF05552 Conserved TM helix 16 64 1.0E-13 T 25-04-2017 IPR008910 Conserved TM helix A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 Gene3D G3DSA:2.30.30.60 129 178 1.7E-20 T 25-04-2017 A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 Gene3D G3DSA:3.30.70.100 182 266 2.4E-26 T 25-04-2017 A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 SUPERFAMILY SSF82689 181 278 5.1E-30 T 25-04-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 Pfam PF00924 Mechanosensitive ion channel 71 268 6.8E-57 T 25-04-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 A4U88_RS20155 1a268350e9d3d6ab20b61b5ec4e01f4c 288 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 25-04-2017 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 373 8.8E-24 T 25-04-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 452 5.1E-11 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 154 258 2.8E-24 T 25-04-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Gene3D G3DSA:3.40.120.10 6 146 6.9E-37 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 SUPERFAMILY SSF53738 4 176 8.63E-41 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 SUPERFAMILY SSF55957 373 455 1.92E-19 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 2.5E-31 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 2.5E-31 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 2.5E-31 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 170 189 2.5E-31 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 SUPERFAMILY SSF53738 263 368 5.89E-31 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 25-04-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 SUPERFAMILY SSF53738 152 260 3.85E-28 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 2.6E-35 T 25-04-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Gene3D G3DSA:3.40.120.10 255 368 3.1E-39 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Gene3D G3DSA:3.30.310.50 374 454 1.0E-16 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07775 1467dd3d3e3ebdcacd3d3ad6e440396e 457 Gene3D G3DSA:3.40.120.10 172 254 1.0E-28 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS11860 12d7d58d8f1673a9a10666232110aeb7 135 Gene3D G3DSA:3.40.1490.10 1 134 6.5E-55 T 25-04-2017 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 A4U88_RS11860 12d7d58d8f1673a9a10666232110aeb7 135 Pfam PF09391 Protein of unknown function (DUF2000) 4 134 5.7E-44 T 25-04-2017 IPR018988 Protein of unknown function DUF2000 A4U88_RS11860 12d7d58d8f1673a9a10666232110aeb7 135 SUPERFAMILY SSF102462 1 134 7.32E-46 T 25-04-2017 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 A4U88_RS00905 01e29c809545757770b771f7dfd1a131 281 SUPERFAMILY SSF161098 4 277 3.08E-60 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00905 01e29c809545757770b771f7dfd1a131 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 276 7.0E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00905 01e29c809545757770b771f7dfd1a131 281 Gene3D G3DSA:1.10.3720.10 4 270 1.6E-54 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 Gene3D G3DSA:1.10.1020.10 59 154 3.4E-34 T 25-04-2017 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 Gene3D G3DSA:3.40.50.150 1 58 2.8E-51 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 Gene3D G3DSA:3.40.50.150 160 267 2.8E-51 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 PIRSF PIRSF000398 1 270 3.8E-65 T 25-04-2017 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 5.3E-19 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 5.3E-19 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 5.3E-19 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 5.3E-19 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 SUPERFAMILY SSF53335 5 268 4.15E-72 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 6.8E-77 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS22635 54e087d7d18b531f8a8fa84b015dd974 270 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 4.0E-97 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS23970 b60429c82a5426052fa53861e79a15cb 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS23970 b60429c82a5426052fa53861e79a15cb 207 Pfam PF01323 DSBA-like thioredoxin domain 40 186 7.2E-29 T 25-04-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 A4U88_RS23970 b60429c82a5426052fa53861e79a15cb 207 SUPERFAMILY SSF52833 20 203 1.47E-46 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23970 b60429c82a5426052fa53861e79a15cb 207 Gene3D G3DSA:3.40.30.10 1 118 8.4E-42 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23970 b60429c82a5426052fa53861e79a15cb 207 Gene3D G3DSA:3.40.30.10 120 203 3.6E-23 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23970 b60429c82a5426052fa53861e79a15cb 207 PIRSF PIRSF001488 1 207 3.4E-88 T 25-04-2017 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL A4U88_RS21800 897cfae04458b1fee86272c1e4d2c8c3 318 Gene3D G3DSA:3.50.30.50 68 317 1.8E-26 T 25-04-2017 A4U88_RS21800 897cfae04458b1fee86272c1e4d2c8c3 318 Pfam PF04199 Putative cyclase 68 253 1.9E-27 T 25-04-2017 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734 A4U88_RS21800 897cfae04458b1fee86272c1e4d2c8c3 318 SUPERFAMILY SSF102198 64 317 1.2E-23 T 25-04-2017 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 Gene3D G3DSA:3.40.1190.20 4 262 7.3E-86 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PIRSF PIRSF000513 11 263 2.2E-94 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 SUPERFAMILY SSF53613 10 262 1.29E-59 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 17 261 1.0E-85 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 19 263 30.041 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 Pfam PF02110 Hydroxyethylthiazole kinase family 17 260 2.5E-88 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 25 32 1.2E-40 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 95 112 1.2E-40 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 38 59 1.2E-40 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 169 186 1.2E-40 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 125 139 1.2E-40 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18220 1af98c7959467c604870f2ed3dac811d 263 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 69 77 1.2E-40 T 25-04-2017 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 Pfam PF03831 PhnA domain 44 111 1.1E-34 T 25-04-2017 IPR013988 PhnA protein, C-terminal A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 SUPERFAMILY SSF57783 1 36 1.87E-14 T 25-04-2017 A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 2 111 2.3E-59 T 25-04-2017 IPR004624 PhnA protein A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 Gene3D G3DSA:2.20.25.10 1 40 5.3E-22 T 25-04-2017 A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 Gene3D G3DSA:2.30.30.40 42 110 7.4E-39 T 25-04-2017 A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 Pfam PF08274 PhnA Zinc-Ribbon 2 31 1.3E-17 T 25-04-2017 IPR013987 PhnA protein, N-terminal A4U88_RS05710 16f581efc52bef9d246107e4c73c13e8 111 SUPERFAMILY SSF82057 39 110 2.29E-29 T 25-04-2017 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 PIRSF PIRSF000185 10 423 6.6E-159 T 25-04-2017 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 188 420 6.0E-74 T 25-04-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 SUPERFAMILY SSF51735 188 423 3.08E-74 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 42 170 1.5E-54 T 25-04-2017 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 107 120 - T 25-04-2017 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 SUPERFAMILY SSF53223 12 190 5.76E-68 T 25-04-2017 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 SMART SM00839 190 420 7.7E-91 T 25-04-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 Gene3D G3DSA:3.40.50.720 188 422 5.5E-81 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 99 113 3.8E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 221 241 3.8E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 179 201 3.8E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 348 359 3.8E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS12015 355b758658dd51aa9908fa7953c6375f 424 Gene3D G3DSA:3.40.192.10 46 186 1.2E-57 T 25-04-2017 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.73 T 25-04-2017 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 PIRSF PIRSF000164 12 336 4.5E-98 T 25-04-2017 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 7.4E-160 T 25-04-2017 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 25-04-2017 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 2.4E-93 T 25-04-2017 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 SUPERFAMILY SSF51395 1 334 8.79E-106 T 25-04-2017 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 25-04-2017 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 A4U88_RS08480 32535867409ae38182f5eba6b49951f1 336 Gene3D G3DSA:3.20.20.70 1 335 4.7E-127 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS17900 a0d241b8b557d16a96a1934fc4689262 189 SUPERFAMILY SSF55021 91 179 1.3E-17 T 25-04-2017 A4U88_RS17900 a0d241b8b557d16a96a1934fc4689262 189 Gene3D G3DSA:3.30.70.260 92 188 5.8E-43 T 25-04-2017 A4U88_RS17900 a0d241b8b557d16a96a1934fc4689262 189 Gene3D G3DSA:3.30.70.260 6 84 1.2E-32 T 25-04-2017 A4U88_RS17900 a0d241b8b557d16a96a1934fc4689262 189 PIRSF PIRSF028103 5 180 1.3E-64 T 25-04-2017 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 A4U88_RS17900 a0d241b8b557d16a96a1934fc4689262 189 Pfam PF13740 ACT domain 7 82 1.8E-26 T 25-04-2017 A4U88_RS17900 a0d241b8b557d16a96a1934fc4689262 189 SUPERFAMILY SSF55021 6 87 4.96E-17 T 25-04-2017 A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 Gene3D G3DSA:3.40.50.720 2 232 1.3E-64 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 1.1E-8 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 1.1E-8 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.1E-8 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 SUPERFAMILY SSF51735 3 229 3.06E-63 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 Pfam PF00106 short chain dehydrogenase 2 187 2.9E-54 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 4.6E-21 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 4.6E-21 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 4.6E-21 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 4.6E-21 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 4.6E-21 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 4.6E-21 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11220 9c1b9ba20ebf808a2879d37c5d4d696b 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 SMART SM00382 28 171 1.0E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 25-04-2017 IPR025944 Sigma-54 interaction domain, conserved site A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 25-04-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 Gene3D G3DSA:1.10.10.60 286 326 1.4E-7 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 Gene3D G3DSA:3.40.50.300 6 179 4.9E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 Pfam PF02954 Bacterial regulatory protein, Fis family 286 323 3.7E-7 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 Gene3D G3DSA:1.10.8.60 180 245 2.3E-22 T 25-04-2017 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 307 327 3.7E-7 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 290 307 3.7E-7 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 SUPERFAMILY SSF46689 222 325 1.43E-6 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 SUPERFAMILY SSF52540 8 243 1.21E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 324 1.3E-160 T 25-04-2017 IPR014317 Transcription activator PspF A4U88_RS12720 efce072a71c7e1f334f1bf2ef0adc56a 335 Pfam PF00158 Sigma-54 interaction domain 9 170 4.3E-61 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS23800 f2b92b3310b9490fd5e0ff1b125ff404 227 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 176 181 - T 25-04-2017 IPR020891 Uncharacterised protein family UPF0758, conserved site A4U88_RS23800 f2b92b3310b9490fd5e0ff1b125ff404 227 Gene3D G3DSA:3.40.140.10 104 227 8.3E-50 T 25-04-2017 A4U88_RS23800 f2b92b3310b9490fd5e0ff1b125ff404 227 Hamap MF_00018 UPF0758 protein YicR [yicR]. 7 227 52.618 T 25-04-2017 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily A4U88_RS23800 f2b92b3310b9490fd5e0ff1b125ff404 227 SUPERFAMILY SSF47781 20 90 1.05E-9 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS23800 f2b92b3310b9490fd5e0ff1b125ff404 227 Pfam PF04002 RadC-like JAB domain 108 225 2.0E-44 T 25-04-2017 IPR025657 RadC-like JAB domain A4U88_RS23800 f2b92b3310b9490fd5e0ff1b125ff404 227 TIGRFAM TIGR00608 radc: DNA repair protein RadC 15 227 2.3E-82 T 25-04-2017 IPR001405 RadC protein A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 Pfam PF01025 GrpE 38 191 1.6E-48 T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 Hamap MF_01151 Protein GrpE [grpE]. 4 191 21.309 T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 PRINTS PR00773 GrpE protein signature 60 76 1.2E-26 T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 PRINTS PR00773 GrpE protein signature 88 103 1.2E-26 T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 PRINTS PR00773 GrpE protein signature 170 189 1.2E-26 T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 PRINTS PR00773 GrpE protein signature 143 158 1.2E-26 T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 ProSitePatterns PS01071 grpE protein signature. 146 189 - T 25-04-2017 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 Gene3D G3DSA:2.30.22.10 135 193 3.8E-26 T 25-04-2017 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 SUPERFAMILY SSF58014 42 135 8.63E-27 T 25-04-2017 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 SUPERFAMILY SSF51064 136 192 5.36E-19 T 25-04-2017 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 A4U88_RS18710 67b7b2a811168ea82b984f398589717d 194 Gene3D G3DSA:3.90.20.20 35 133 1.6E-30 T 25-04-2017 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 Gene3D G3DSA:3.40.190.10 177 264 1.9E-21 T 25-04-2017 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 SUPERFAMILY SSF53850 90 298 1.55E-40 T 25-04-2017 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 Pfam PF03466 LysR substrate binding domain 89 295 1.3E-38 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 5.0E-23 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 Gene3D G3DSA:3.40.190.10 84 176 5.4E-10 T 25-04-2017 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.6E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.6E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.6E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 Gene3D G3DSA:1.10.10.10 5 83 2.2E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11080 6963eb1e1cb3014dc020398f96258513 302 SUPERFAMILY SSF46785 5 87 3.81E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20460 1dfb58d1e60211c4ee8e74115b51e478 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 29.817 T 25-04-2017 IPR008249 Uncharacterised protein family UPF0231 A4U88_RS20460 1dfb58d1e60211c4ee8e74115b51e478 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 2.9E-45 T 25-04-2017 IPR008249 Uncharacterised protein family UPF0231 A4U88_RS20460 1dfb58d1e60211c4ee8e74115b51e478 120 PIRSF PIRSF006287 1 120 3.2E-49 T 25-04-2017 IPR008249 Uncharacterised protein family UPF0231 A4U88_RS20460 1dfb58d1e60211c4ee8e74115b51e478 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 2.0E-48 T 25-04-2017 IPR008249 Uncharacterised protein family UPF0231 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 TIGRFAM TIGR03138 QueF: queuine synthase 9 279 3.9E-120 T 25-04-2017 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 Pfam PF14489 QueF-like protein 193 266 8.3E-28 T 25-04-2017 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 279 144.051 T 25-04-2017 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 18 128 1.4E-46 T 25-04-2017 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 Gene3D G3DSA:3.30.1130.10 18 130 4.2E-41 T 25-04-2017 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 Gene3D G3DSA:3.30.1130.10 143 278 1.2E-50 T 25-04-2017 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 PIRSF PIRSF004750 3 279 1.1E-117 T 25-04-2017 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS20705 3960500947c6650caaa28c14812437b8 279 SUPERFAMILY SSF55620 184 263 5.34E-9 T 25-04-2017 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.522 T 25-04-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 Pfam PF00572 Ribosomal protein L13 15 138 1.2E-56 T 25-04-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 SUPERFAMILY SSF52161 1 140 1.57E-60 T 25-04-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 1.2E-67 T 25-04-2017 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 PIRSF PIRSF002181 1 142 2.3E-50 T 25-04-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 Gene3D G3DSA:3.90.1180.10 3 141 4.5E-65 T 25-04-2017 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 A4U88_RS21310 eff1a74f7d0a284112fa528736a34518 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 25-04-2017 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 A4U88_RS19250 2dc246e7a5aef28e36adb901ce1dde26 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 1.3E-77 T 25-04-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 A4U88_RS19250 2dc246e7a5aef28e36adb901ce1dde26 252 SUPERFAMILY SSF64005 13 238 2.88E-86 T 25-04-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 A4U88_RS19250 2dc246e7a5aef28e36adb901ce1dde26 252 Gene3D G3DSA:3.40.1180.10 11 244 2.3E-95 T 25-04-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 A4U88_RS19250 2dc246e7a5aef28e36adb901ce1dde26 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 16 242 2.7E-101 T 25-04-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 A4U88_RS19250 2dc246e7a5aef28e36adb901ce1dde26 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 25-04-2017 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 A4U88_RS19250 2dc246e7a5aef28e36adb901ce1dde26 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 40.164 T 25-04-2017 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 A4U88_RS12415 bdcd12260939c657988ad562a5d797f6 238 Gene3D G3DSA:3.40.50.880 2 232 1.1E-48 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS12415 bdcd12260939c657988ad562a5d797f6 238 Pfam PF00117 Glutamine amidotransferase class-I 28 185 5.5E-13 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS12415 bdcd12260939c657988ad562a5d797f6 238 SUPERFAMILY SSF52317 20 232 4.89E-40 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS15855 87f3f9740df5cf93b3101476805c697f 306 PIRSF PIRSF015582 2 304 1.2E-77 T 25-04-2017 IPR011206 Citrate lyase beta subunit-like A4U88_RS15855 87f3f9740df5cf93b3101476805c697f 306 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 11 230 1.7E-80 T 25-04-2017 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 A4U88_RS15855 87f3f9740df5cf93b3101476805c697f 306 SUPERFAMILY SSF51621 7 240 3.84E-62 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS15855 87f3f9740df5cf93b3101476805c697f 306 Gene3D G3DSA:3.20.20.60 5 241 1.7E-73 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS15855 87f3f9740df5cf93b3101476805c697f 306 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 8 294 1.1E-135 T 25-04-2017 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.5E-31 T 25-04-2017 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.5E-31 T 25-04-2017 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.5E-31 T 25-04-2017 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.5E-31 T 25-04-2017 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 PIRSF PIRSF000732 1 574 1.2E-219 T 25-04-2017 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 25-04-2017 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 SUPERFAMILY SSF51621 252 549 6.54E-111 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 2.5E-29 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 7.5E-261 T 25-04-2017 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 541 3.2E-126 T 25-04-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 25-04-2017 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 2.2E-22 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 SUPERFAMILY SSF47831 24 143 3.79E-33 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 Gene3D G3DSA:3.20.20.60 256 572 4.6E-117 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 Gene3D G3DSA:3.50.30.10 133 255 9.8E-41 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 Gene3D G3DSA:1.10.274.10 24 132 9.0E-38 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS17615 e603308d90dbde47f250afd740f44650 575 SUPERFAMILY SSF52009 125 246 2.35E-36 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 Pfam PF00732 GMC oxidoreductase 3 300 9.6E-99 T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 Gene3D G3DSA:3.50.50.60 470 534 3.6E-121 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 Gene3D G3DSA:3.50.50.60 190 318 3.6E-121 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 Gene3D G3DSA:3.50.50.60 2 127 3.6E-121 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 SUPERFAMILY SSF54373 295 477 2.94E-64 T 25-04-2017 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 PIRSF PIRSF000137 1 538 3.9E-139 T 25-04-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 1 554 62.886 T 25-04-2017 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 Pfam PF05199 GMC oxidoreductase 393 527 3.5E-41 T 25-04-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 TIGRFAM TIGR01810 betA: choline dehydrogenase 4 537 2.4E-291 T 25-04-2017 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 259 273 - T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 SUPERFAMILY SSF51905 1 293 4.75E-89 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07365 63f6d5b2e93a2ef1a9b3a83b9db0be48 555 SUPERFAMILY SSF51905 476 535 4.75E-89 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 150 1.9E-63 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 SUPERFAMILY SSF52096 5 318 8.85E-106 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 2.0E-49 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 2.0E-49 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 2.0E-49 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 2.0E-49 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 2.0E-49 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 2.0E-49 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 5.5E-172 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 Gene3D G3DSA:3.90.226.10 59 284 1.4E-49 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS19195 752252bb8529e3950b30146466f7ca00 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.643 T 25-04-2017 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS16395 bb2680c0f17e64dfcf2ef5a51af93022 324 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 161 8.7E-39 T 25-04-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain A4U88_RS16395 bb2680c0f17e64dfcf2ef5a51af93022 324 SUPERFAMILY SSF52540 6 161 7.47E-25 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16395 bb2680c0f17e64dfcf2ef5a51af93022 324 Gene3D G3DSA:3.40.50.300 2 167 4.6E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16395 bb2680c0f17e64dfcf2ef5a51af93022 324 SMART SM00833 239 322 0.0015 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS16395 bb2680c0f17e64dfcf2ef5a51af93022 324 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 241 319 4.8E-7 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS16950 7e1a59c8300f3dbf04c6846fc5e498c2 181 Gene3D G3DSA:3.90.79.10 6 172 1.9E-61 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS16950 7e1a59c8300f3dbf04c6846fc5e498c2 181 PIRSF PIRSF017340 2 171 9.9E-70 T 25-04-2017 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 A4U88_RS16950 7e1a59c8300f3dbf04c6846fc5e498c2 181 Pfam PF00293 NUDIX domain 37 151 3.6E-19 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS16950 7e1a59c8300f3dbf04c6846fc5e498c2 181 SUPERFAMILY SSF55811 11 167 2.84E-34 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 Pfam PF01008 Initiation factor 2 subunit family 48 329 8.3E-66 T 25-04-2017 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 5 340 36.258 T 25-04-2017 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 33 329 2.1E-92 T 25-04-2017 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 8 328 1.1E-123 T 25-04-2017 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 Gene3D G3DSA:3.40.50.10470 147 334 4.0E-66 T 25-04-2017 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 SUPERFAMILY SSF100950 9 333 9.07E-110 T 25-04-2017 A4U88_RS04085 0301677996b703278ed5534392da0afa 342 Gene3D G3DSA:1.20.120.420 8 146 4.6E-38 T 25-04-2017 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 A4U88_RS12890 8d94c89087c589634e5ef414c0e3c72d 354 Pfam PF02653 Branched-chain amino acid transport system / permease component 43 320 2.7E-44 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 3.0E-27 T 25-04-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 5.4E-68 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 1.4E-68 T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 Gene3D G3DSA:3.30.1240.10 87 183 1.6E-40 T 25-04-2017 A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 ProSitePatterns PS01229 Hypothetical cof family signature 2. 218 240 - T 25-04-2017 A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 SUPERFAMILY SSF56784 1 269 2.46E-77 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 Gene3D G3DSA:3.40.50.1000 1 76 1.3E-59 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00025 984f5da3fe979e90bef856f40bde6058 271 Gene3D G3DSA:3.40.50.1000 184 269 1.3E-59 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS11620 474bb52d024e4f6e97d94861ad05d799 405 SUPERFAMILY SSF103473 5 381 3.4E-52 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11620 474bb52d024e4f6e97d94861ad05d799 405 Pfam PF07690 Major Facilitator Superfamily 10 308 6.1E-29 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS11620 474bb52d024e4f6e97d94861ad05d799 405 Gene3D G3DSA:1.20.1250.20 194 380 5.8E-13 T 25-04-2017 A4U88_RS11620 474bb52d024e4f6e97d94861ad05d799 405 Gene3D G3DSA:1.20.1250.20 6 184 1.3E-28 T 25-04-2017 A4U88_RS19135 2a6404074daa7248b8c1ab1ca89a22b0 137 SUPERFAMILY SSF75620 6 113 1.26E-14 T 25-04-2017 A4U88_RS19135 2a6404074daa7248b8c1ab1ca89a22b0 137 Pfam PF00472 RF-1 domain 6 132 1.2E-25 T 25-04-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 A4U88_RS19135 2a6404074daa7248b8c1ab1ca89a22b0 137 Gene3D G3DSA:3.30.160.200 4 107 9.3E-34 T 25-04-2017 A4U88_RS19135 2a6404074daa7248b8c1ab1ca89a22b0 137 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 25-04-2017 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 Gene3D G3DSA:3.40.190.10 90 170 1.5E-24 T 25-04-2017 A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 Gene3D G3DSA:3.40.190.10 272 299 1.5E-24 T 25-04-2017 A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 SUPERFAMILY SSF46785 3 82 4.4E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 Gene3D G3DSA:1.10.10.10 2 84 1.4E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 4.1E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 SUPERFAMILY SSF53850 90 295 3.98E-37 T 25-04-2017 A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 Pfam PF03466 LysR substrate binding domain 94 297 1.9E-24 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11810 6394a1b26af26178d5982448f6d86817 307 Gene3D G3DSA:3.40.190.10 171 268 7.3E-28 T 25-04-2017 A4U88_RS08020 ef7d1cdd68a4ee74ea7f2ea4473635d1 170 Gene3D G3DSA:2.60.40.550 31 112 4.0E-38 T 25-04-2017 IPR023189 Proteinase inhibitor I11, ecotin domain A4U88_RS08020 ef7d1cdd68a4ee74ea7f2ea4473635d1 170 PIRSF PIRSF006865 1 170 1.2E-64 T 25-04-2017 IPR005658 Proteinase inhibitor I11, ecotin A4U88_RS08020 ef7d1cdd68a4ee74ea7f2ea4473635d1 170 Gene3D G3DSA:4.10.1230.10 113 168 8.1E-29 T 25-04-2017 IPR027438 Ecotin, C-terminal A4U88_RS08020 ef7d1cdd68a4ee74ea7f2ea4473635d1 170 SUPERFAMILY SSF49772 34 168 4.19E-56 T 25-04-2017 IPR023189 Proteinase inhibitor I11, ecotin domain A4U88_RS08020 ef7d1cdd68a4ee74ea7f2ea4473635d1 170 Hamap MF_00706 Ecotin [eco]. 4 170 38.149 T 25-04-2017 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria A4U88_RS08020 ef7d1cdd68a4ee74ea7f2ea4473635d1 170 Pfam PF03974 Ecotin 38 160 2.4E-52 T 25-04-2017 IPR023189 Proteinase inhibitor I11, ecotin domain A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 403 51.148 T 25-04-2017 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 396 2.4E-135 T 25-04-2017 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 SUPERFAMILY SSF52402 7 172 9.04E-46 T 25-04-2017 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 122 133 - T 25-04-2017 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 Pfam PF00764 Arginosuccinate synthase 10 397 7.5E-144 T 25-04-2017 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 Gene3D G3DSA:3.90.1260.10 180 405 6.9E-91 T 25-04-2017 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 SUPERFAMILY SSF69864 177 404 1.7E-88 T 25-04-2017 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 25-04-2017 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23480 7734f934b8a4f135053059db955d641c 406 Gene3D G3DSA:3.40.50.620 7 175 3.2E-61 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS19435 cfd35bf6e4a54e46c7529be5b3ab531d 111 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.6E-4 T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS19435 cfd35bf6e4a54e46c7529be5b3ab531d 111 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 30 109 5.3E-25 T 25-04-2017 IPR022204 Prepilin peptidase dependent protein C A4U88_RS02970 30b79190807e3cc934e524dd042ff6f2 172 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 7 170 8.2E-47 T 25-04-2017 IPR002786 Non-canonical purine NTP phosphatase A4U88_RS02970 30b79190807e3cc934e524dd042ff6f2 172 SUPERFAMILY SSF52972 1 167 5.67E-54 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS02970 30b79190807e3cc934e524dd042ff6f2 172 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 28.005 T 25-04-2017 IPR002786 Non-canonical purine NTP phosphatase A4U88_RS02970 30b79190807e3cc934e524dd042ff6f2 172 Pfam PF01931 Protein of unknown function DUF84 7 166 4.8E-50 T 25-04-2017 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 A4U88_RS02970 30b79190807e3cc934e524dd042ff6f2 172 Gene3D G3DSA:3.90.950.10 2 168 7.7E-58 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS05915 54ddf32005f029ee91ac063eddb6d18d 310 SUPERFAMILY SSF50891 173 289 2.5E-11 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS05915 54ddf32005f029ee91ac063eddb6d18d 310 SMART SM00797 23 299 6.8E-146 T 25-04-2017 IPR003778 Carboxyltransferase domain, subdomain A and B A4U88_RS05915 54ddf32005f029ee91ac063eddb6d18d 310 Pfam PF02626 Allophanate hydrolase subunit 2 24 282 3.4E-94 T 25-04-2017 IPR003778 Carboxyltransferase domain, subdomain A and B A4U88_RS05915 54ddf32005f029ee91ac063eddb6d18d 310 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 309 1.1E-120 T 25-04-2017 IPR003778 Carboxyltransferase domain, subdomain A and B A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 SUPERFAMILY SSF52540 6 237 2.2E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 SMART SM00382 26 228 9.8E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 SMART SM00382 344 521 4.7E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 Pfam PF00005 ABC transporter 18 184 9.7E-19 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 Pfam PF00005 ABC transporter 337 467 9.3E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 Pfam PF12848 ABC transporter 224 309 7.3E-21 T 25-04-2017 IPR032781 ABC-transporter extension domain A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 SUPERFAMILY SSF52540 298 523 3.23E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 Gene3D G3DSA:3.40.50.300 318 528 2.3E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07480 d44c570313f0ec273b85df65ff355b48 530 Gene3D G3DSA:3.40.50.300 2 270 3.4E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 Gene3D G3DSA:3.40.50.1260 5 174 5.4E-65 T 25-04-2017 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 Gene3D G3DSA:3.40.50.1270 175 371 1.3E-78 T 25-04-2017 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.873 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 SUPERFAMILY SSF53748 3 383 7.89E-143 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 8.1E-83 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 25-04-2017 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 PIRSF PIRSF000724 1 387 3.2E-130 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20170 fbafc846e8e896ce1e10e86ad792dc95 387 Pfam PF00162 Phosphoglycerate kinase 6 373 3.3E-136 T 25-04-2017 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS19785 b2f8ba31e6e6fba072d990880aa41dcf 212 Pfam PF10014 2OG-Fe dioxygenase 24 208 1.1E-51 T 25-04-2017 IPR018724 2OG-Fe dioxygenase A4U88_RS06030 9371097788aa9477d79a3185b67d8cb8 407 Pfam PF06519 TolA C-terminal 312 405 1.9E-34 T 25-04-2017 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 A4U88_RS06030 9371097788aa9477d79a3185b67d8cb8 407 Gene3D G3DSA:3.30.1150.10 309 407 1.2E-40 T 25-04-2017 A4U88_RS06030 9371097788aa9477d79a3185b67d8cb8 407 TIGRFAM TIGR02794 tolA_full: protein TolA 13 195 2.2E-38 T 25-04-2017 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 A4U88_RS06030 9371097788aa9477d79a3185b67d8cb8 407 TIGRFAM TIGR02794 tolA_full: protein TolA 182 407 1.2E-50 T 25-04-2017 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 A4U88_RS06030 9371097788aa9477d79a3185b67d8cb8 407 SUPERFAMILY SSF74653 320 407 2.35E-20 T 25-04-2017 A4U88_RS21055 63e029de8b96c95ea3a3b581dfcc1458 146 Gene3D G3DSA:3.40.630.30 5 143 1.3E-28 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS21055 63e029de8b96c95ea3a3b581dfcc1458 146 SUPERFAMILY SSF55729 2 142 3.66E-30 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS21055 63e029de8b96c95ea3a3b581dfcc1458 146 Pfam PF00583 Acetyltransferase (GNAT) family 50 132 1.2E-10 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS21055 63e029de8b96c95ea3a3b581dfcc1458 146 PIRSF PIRSF000452 1 146 1.7E-51 T 25-04-2017 IPR024170 Aminoglycoside N6-acetyltransferase A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 Pfam PF01047 MarR family 25 63 5.8E-7 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 SUPERFAMILY SSF46785 14 79 1.49E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 SUPERFAMILY SSF53067 88 394 4.88E-55 T 25-04-2017 A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 Gene3D G3DSA:3.30.420.40 84 224 6.9E-32 T 25-04-2017 A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 Gene3D G3DSA:3.30.420.40 225 376 1.5E-48 T 25-04-2017 A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 Gene3D G3DSA:1.10.10.10 14 79 3.7E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 ProSitePatterns PS01125 ROK family signature. 220 247 - T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS05775 1b7f3e91206f13e630f5e9611d44c7b9 406 Pfam PF00480 ROK family 89 392 1.3E-90 T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 5.5E-21 T 25-04-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Pfam PF05746 DALR anticodon binding domain 460 576 4.5E-35 T 25-04-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 576 28.785 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 2.4E-26 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 303 324 2.4E-26 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 2.4E-26 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 2.4E-26 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 4 576 3.6E-204 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Gene3D G3DSA:1.10.730.10 454 576 2.3E-36 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 SUPERFAMILY SSF55190 2 101 8.89E-22 T 25-04-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Gene3D G3DSA:3.40.50.620 110 453 1.0E-117 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Pfam PF00750 tRNA synthetases class I (R) 102 446 1.0E-164 T 25-04-2017 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 SUPERFAMILY SSF47323 454 576 4.64E-35 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 SMART SM01016 5 87 1.5E-28 T 25-04-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 SUPERFAMILY SSF52374 108 454 1.99E-96 T 25-04-2017 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 Gene3D G3DSA:3.30.1360.70 2 105 1.1E-33 T 25-04-2017 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 A4U88_RS13675 248eef98f9767c94350aaa012cdafbe9 576 SMART SM00836 460 576 1.9E-38 T 25-04-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 SMART SM00100 30 151 3.3E-21 T 25-04-2017 IPR000595 Cyclic nucleotide-binding domain A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 25-04-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 2.7E-15 T 25-04-2017 IPR000595 Cyclic nucleotide-binding domain A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 Pfam PF13545 Crp-like helix-turn-helix domain 168 240 2.9E-15 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 2.6E-11 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 2.6E-11 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 SUPERFAMILY SSF51206 23 162 6.42E-31 T 25-04-2017 IPR018490 Cyclic nucleotide-binding-like A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 SUPERFAMILY SSF46785 165 243 4.18E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 Gene3D G3DSA:2.60.120.10 18 169 3.0E-40 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 Gene3D G3DSA:1.10.10.10 170 235 1.7E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12500 464009d0c812dcdebce29c0c7bfff3df 254 SMART SM00419 187 235 7.1E-13 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 46.575 T 25-04-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 PIRSF PIRSF006205 1 397 3.9E-154 T 25-04-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 1.6E-41 T 25-04-2017 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 SUPERFAMILY SSF55347 126 274 1.34E-62 T 25-04-2017 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 SUPERFAMILY SSF69055 302 394 3.4E-30 T 25-04-2017 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 SUPERFAMILY SSF51735 2 150 2.1E-46 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 Gene3D G3DSA:1.10.1740.10 313 394 2.6E-29 T 25-04-2017 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 393 3.8E-180 T 25-04-2017 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 4.6E-36 T 25-04-2017 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 1.8E-46 T 25-04-2017 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 A4U88_RS19255 f4a4d3efd495f62a8633b82681c8e593 398 Gene3D G3DSA:3.40.50.720 1 150 2.8E-55 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02360 22a3a4639f3c9bcbdb40064456b0eaca 480 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS02360 22a3a4639f3c9bcbdb40064456b0eaca 480 Gene3D G3DSA:3.30.1360.60 4 80 3.3E-28 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS02360 22a3a4639f3c9bcbdb40064456b0eaca 480 Pfam PF02378 Phosphotransferase system, EIIC 113 396 8.9E-40 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS02360 22a3a4639f3c9bcbdb40064456b0eaca 480 SUPERFAMILY SSF55604 8 79 2.22E-21 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS02360 22a3a4639f3c9bcbdb40064456b0eaca 480 Pfam PF00367 phosphotransferase system, EIIB 11 43 1.2E-15 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 Pfam PF09339 IclR helix-turn-helix domain 14 64 1.6E-17 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 Gene3D G3DSA:3.30.450.40 85 257 2.3E-40 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 SUPERFAMILY SSF46785 11 84 2.39E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 Gene3D G3DSA:1.10.10.10 5 82 5.2E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 SMART SM00346 11 101 8.7E-30 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 SUPERFAMILY SSF55781 77 256 2.22E-39 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS20270 68a7cb1e5b3bdca29a3d431236be1ea7 264 Pfam PF01614 Bacterial transcriptional regulator 132 252 4.0E-20 T 25-04-2017 IPR014757 Transcription regulator IclR, C-terminal A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 271 3.7E-90 T 25-04-2017 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 275 9.6E-89 T 25-04-2017 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 Pfam PF13847 Methyltransferase domain 111 242 4.2E-22 T 25-04-2017 IPR025714 Methyltransferase domain A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 Gene3D G3DSA:3.40.50.150 86 275 6.1E-72 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 SUPERFAMILY SSF53335 3 273 1.57E-62 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 275 45.908 T 25-04-2017 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 Gene3D G3DSA:1.10.8.10 1 84 3.6E-28 T 25-04-2017 A4U88_RS09715 d59b8fc107ed02f4959950e2a335c28e 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 180 186 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS17645 94eab2db036b84e1bef457f540d54125 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 14 275 5.7E-109 T 25-04-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 A4U88_RS17645 94eab2db036b84e1bef457f540d54125 291 Gene3D G3DSA:1.10.3720.10 19 278 1.5E-47 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17645 94eab2db036b84e1bef457f540d54125 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 277 8.8E-115 T 25-04-2017 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 A4U88_RS17645 94eab2db036b84e1bef457f540d54125 291 SUPERFAMILY SSF161098 16 268 5.36E-52 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17645 94eab2db036b84e1bef457f540d54125 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 272 2.6E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 Pfam PF00571 CBS domain 278 326 3.3E-4 T 25-04-2017 IPR000644 CBS domain A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 Gene3D G3DSA:3.10.580.10 191 318 8.5E-12 T 25-04-2017 A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 Gene3D G3DSA:3.30.465.10 319 419 4.1E-26 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 SUPERFAMILY SSF54631 192 329 2.4E-23 T 25-04-2017 A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 SMART SM01091 342 420 3.6E-26 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 SUPERFAMILY SSF56176 340 422 4.64E-22 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 Pfam PF03471 Transporter associated domain 344 418 8.2E-20 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS03815 efbfc10611ef379df7f0289ebde98b27 429 Pfam PF01595 Domain of unknown function DUF21 11 184 7.9E-50 T 25-04-2017 IPR002550 Domain of unknown function DUF21 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 Gene3D G3DSA:1.10.10.10 7 88 5.5E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 Gene3D G3DSA:3.40.190.10 94 175 5.5E-24 T 25-04-2017 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 Pfam PF03466 LysR substrate binding domain 91 286 2.8E-30 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.4E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.5E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.5E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.5E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 Gene3D G3DSA:3.40.190.10 176 256 3.1E-19 T 25-04-2017 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 SUPERFAMILY SSF53850 92 287 1.14E-31 T 25-04-2017 A4U88_RS11865 96aae5d9ce21bf26667bdc041457e2b5 289 SUPERFAMILY SSF46785 5 113 1.22E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 2.3E-37 T 25-04-2017 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 Gene3D G3DSA:2.160.10.10 143 250 1.4E-31 T 25-04-2017 A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 SUPERFAMILY SSF51161 8 260 3.47E-66 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 Gene3D G3DSA:1.10.3130.10 7 142 1.2E-50 T 25-04-2017 A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 83 242 1.6E-73 T 25-04-2017 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 2.1E-9 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS23660 16b0ced106ea21bfbae72f9df3b05df4 273 SMART SM00971 9 113 3.6E-59 T 25-04-2017 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Gene3D G3DSA:3.30.70.270 684 847 6.3E-52 T 25-04-2017 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00267 671 842 1.1E-56 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Gene3D G3DSA:3.20.20.450 864 1089 4.2E-30 T 25-04-2017 IPR001633 EAL domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00091 302 368 7.1E-12 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00091 429 496 5.4 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00091 556 621 2.0E-5 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Pfam PF00990 Diguanylate cyclase, GGDEF domain 682 837 4.3E-41 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SUPERFAMILY SSF55073 687 843 2.04E-45 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SUPERFAMILY SSF141868 865 1091 1.31E-27 T 25-04-2017 IPR001633 EAL domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00052 854 1099 2.1E-9 T 25-04-2017 IPR001633 EAL domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Pfam PF08447 PAS fold 452 538 3.6E-16 T 25-04-2017 IPR013655 PAS fold-3 GO:0005515 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Pfam PF08447 PAS fold 326 409 7.9E-13 T 25-04-2017 IPR013655 PAS fold-3 GO:0005515 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Gene3D G3DSA:3.30.450.20 433 542 3.2E-18 T 25-04-2017 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Pfam PF08448 PAS fold 562 672 9.5E-8 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Gene3D G3DSA:3.30.450.20 296 415 2.4E-25 T 25-04-2017 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00086 629 671 0.29 T 25-04-2017 IPR001610 PAC motif A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00086 375 417 6.0E-10 T 25-04-2017 IPR001610 PAC motif A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SMART SM00086 502 544 6.1E-8 T 25-04-2017 IPR001610 PAC motif A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SUPERFAMILY SSF55785 540 665 1.42E-17 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Gene3D G3DSA:3.30.450.20 550 669 1.5E-17 T 25-04-2017 A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 680 841 5.5E-39 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SUPERFAMILY SSF55785 440 545 5.06E-17 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 SUPERFAMILY SSF55785 295 415 1.35E-24 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Pfam PF00563 EAL domain 866 1090 1.7E-28 T 25-04-2017 IPR001633 EAL domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 476 551 3.3E-6 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 299 423 1.5E-29 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 553 676 1.5E-10 T 25-04-2017 IPR000014 PAS domain A4U88_RS18050 cec10ed7823df37456270fcc01906be5 1109 Pfam PF05231 MASE1 20 274 2.7E-16 T 25-04-2017 IPR007895 MASE1 A4U88_RS20200 d40db7e57ead09413b3bbaad99a194c5 110 Pfam PF01588 Putative tRNA binding domain 12 108 2.5E-13 T 25-04-2017 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 A4U88_RS20200 d40db7e57ead09413b3bbaad99a194c5 110 TIGRFAM TIGR02222 chap_CsaA: export-related chaperone protein CsaA 5 109 2.2E-41 T 25-04-2017 IPR008231 Probable chaperone CsaA A4U88_RS20200 d40db7e57ead09413b3bbaad99a194c5 110 Gene3D G3DSA:2.40.50.140 3 109 1.5E-30 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS20200 d40db7e57ead09413b3bbaad99a194c5 110 SUPERFAMILY SSF50249 2 109 5.14E-26 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS16245 dc8eeadc2753073bddbd45671a7c8cc0 475 Pfam PF00929 Exonuclease 11 190 1.9E-27 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS16245 dc8eeadc2753073bddbd45671a7c8cc0 475 Pfam PF08411 Exonuclease C-terminal 210 471 2.1E-108 T 25-04-2017 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 A4U88_RS16245 dc8eeadc2753073bddbd45671a7c8cc0 475 PIRSF PIRSF000977 1 475 4.4E-205 T 25-04-2017 IPR023607 Exodeoxyribonuclease I GO:0004529 A4U88_RS16245 dc8eeadc2753073bddbd45671a7c8cc0 475 Gene3D G3DSA:3.30.420.10 4 198 4.7E-83 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS16245 dc8eeadc2753073bddbd45671a7c8cc0 475 SUPERFAMILY SSF53098 8 473 5.24E-136 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS16245 dc8eeadc2753073bddbd45671a7c8cc0 475 SMART SM00479 8 201 0.0059 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Hamap MF_00974 DNA primase [dnaG]. 4 579 30.487 T 25-04-2017 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Gene3D G3DSA:1.10.860.10 436 580 3.4E-53 T 25-04-2017 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 8.3E-35 T 25-04-2017 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Gene3D G3DSA:3.90.980.10 115 240 5.3E-47 T 25-04-2017 IPR013264 DNA primase, catalytic core, N-terminal A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 TIGRFAM TIGR01391 dnaG: DNA primase 4 419 3.1E-151 T 25-04-2017 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 SUPERFAMILY SSF57783 4 100 2.38E-35 T 25-04-2017 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Pfam PF13155 Toprim-like 263 348 4.0E-15 T 25-04-2017 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 SUPERFAMILY SSF117023 447 578 6.54E-44 T 25-04-2017 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 2.4E-43 T 25-04-2017 IPR013264 DNA primase, catalytic core, N-terminal A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 SMART SM00766 450 575 8.7E-51 T 25-04-2017 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Pfam PF01807 CHC2 zinc finger 7 100 1.3E-40 T 25-04-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 SMART SM00493 259 330 3.0E-22 T 25-04-2017 IPR006171 Toprim domain A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 SMART SM00400 36 90 2.2E-36 T 25-04-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Gene3D G3DSA:1.20.50.20 368 426 2.1E-27 T 25-04-2017 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 SUPERFAMILY SSF56731 115 427 9.59E-115 T 25-04-2017 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Gene3D G3DSA:3.40.1360.10 241 367 2.4E-48 T 25-04-2017 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 1.5E-12 T 25-04-2017 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 Gene3D G3DSA:3.90.580.10 1 101 1.2E-40 T 25-04-2017 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 A4U88_RS21020 1290abe69fa2e87d1cee6dc5f4288529 582 PIRSF PIRSF002811 2 582 6.0E-147 T 25-04-2017 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 SUPERFAMILY SSF56719 730 795 4.97E-86 T 25-04-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 SUPERFAMILY SSF56719 394 560 4.97E-86 T 25-04-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 111.502 T 25-04-2017 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Gene3D G3DSA:3.30.230.10 220 392 5.4E-78 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 2.1E-80 T 25-04-2017 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 SUPERFAMILY SSF54211 221 392 2.09E-62 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 172 4.8E-24 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Gene3D G3DSA:3.40.50.670 718 786 1.4E-100 T 25-04-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Gene3D G3DSA:3.40.50.670 404 550 1.4E-100 T 25-04-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 SMART SM00387 31 175 1.6E-30 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 25-04-2017 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 1.4E-70 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 SMART SM00433 35 797 7.0E-282 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Pfam PF01751 Toprim domain 419 531 1.4E-17 T 25-04-2017 IPR006171 Toprim domain A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 SUPERFAMILY SSF55874 4 220 6.94E-77 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 732 793 3.6E-30 T 25-04-2017 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Gene3D G3DSA:3.30.565.10 15 218 1.7E-93 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 Pfam PF00204 DNA gyrase B 221 390 1.3E-59 T 25-04-2017 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS00020 f519b0f4243ac2496bc878a202f4489d 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 25-04-2017 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 Gene3D G3DSA:1.10.10.10 1 80 4.0E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 9.1E-22 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 SUPERFAMILY SSF53850 89 295 2.17E-28 T 25-04-2017 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 Gene3D G3DSA:3.40.190.10 81 193 4.9E-18 T 25-04-2017 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 Pfam PF03466 LysR substrate binding domain 88 290 4.1E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 Gene3D G3DSA:3.40.190.10 194 249 5.5E-10 T 25-04-2017 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15675 1628449346c14435584d7b5405c0af09 307 SUPERFAMILY SSF46785 1 86 2.67E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 2.8E-136 T 25-04-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 SMART SM01230 102 379 5.8E-147 T 25-04-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 Gene3D G3DSA:3.30.590.10 106 455 1.7E-138 T 25-04-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 4.7E-214 T 25-04-2017 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 25-04-2017 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 SUPERFAMILY SSF54368 3 100 3.4E-37 T 25-04-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 5.6E-32 T 25-04-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 SUPERFAMILY SSF55931 102 468 2.26E-136 T 25-04-2017 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 25-04-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 25-04-2017 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS23920 9b2d0a2887cae80c128cffe35cd84656 469 Gene3D G3DSA:3.10.20.70 3 105 1.3E-40 T 25-04-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 SUPERFAMILY SSF54980 399 493 9.59E-25 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 SUPERFAMILY SSF54980 292 370 3.02E-18 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Gene3D G3DSA:3.30.70.870 291 369 1.1E-25 T 25-04-2017 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 1.2E-11 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 SUPERFAMILY SSF52540 2 235 5.32E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 170 3.0E-16 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 6.6E-51 T 25-04-2017 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Gene3D G3DSA:2.40.30.10 193 289 1.6E-24 T 25-04-2017 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 308.112 T 25-04-2017 IPR006297 Elongation factor 4 GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Pfam PF00679 Elongation factor G C-terminus 399 482 7.4E-20 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 3.1E-301 T 25-04-2017 IPR006297 Elongation factor 4 GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 1.0E-48 T 25-04-2017 IPR013842 GTP-binding protein LepA, C-terminal A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Gene3D G3DSA:3.30.70.240 401 489 1.1E-20 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS18645 bb4770c9c1292b6923638a29094cdb69 599 Gene3D G3DSA:3.40.50.300 2 192 3.2E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05475 0d3b7109562af8e309bb9a78cb469be4 101 SUPERFAMILY SSF46689 48 96 1.52E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05475 0d3b7109562af8e309bb9a78cb469be4 101 SMART SM00342 11 94 3.9E-25 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS05475 0d3b7109562af8e309bb9a78cb469be4 101 Gene3D G3DSA:1.10.10.60 1 47 7.8E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05475 0d3b7109562af8e309bb9a78cb469be4 101 Pfam PF12833 Helix-turn-helix domain 19 92 2.4E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS05475 0d3b7109562af8e309bb9a78cb469be4 101 SUPERFAMILY SSF46689 2 45 1.08E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05475 0d3b7109562af8e309bb9a78cb469be4 101 Gene3D G3DSA:1.10.10.60 48 97 2.4E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS13935 cabb611f15cbdf2c3822c9caab2af987 446 Gene3D G3DSA:3.75.10.20 1 446 5.4E-230 T 25-04-2017 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 A4U88_RS13935 cabb611f15cbdf2c3822c9caab2af987 446 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 445 2.8E-249 T 25-04-2017 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 A4U88_RS13935 cabb611f15cbdf2c3822c9caab2af987 446 Pfam PF04996 Succinylarginine dihydrolase 4 445 3.6E-222 T 25-04-2017 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 A4U88_RS13935 cabb611f15cbdf2c3822c9caab2af987 446 SUPERFAMILY SSF55909 4 446 3.04E-208 T 25-04-2017 A4U88_RS13935 cabb611f15cbdf2c3822c9caab2af987 446 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 446 60.155 T 25-04-2017 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 A4U88_RS06520 7337b3c1017c2e26aa37356f1284f5dc 270 PIRSF PIRSF002854 2 270 3.6E-92 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS06520 7337b3c1017c2e26aa37356f1284f5dc 270 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 15 270 5.6E-134 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS06520 7337b3c1017c2e26aa37356f1284f5dc 270 Gene3D G3DSA:3.40.190.10 29 160 1.2E-53 T 25-04-2017 A4U88_RS06520 7337b3c1017c2e26aa37356f1284f5dc 270 SUPERFAMILY SSF53850 32 270 3.57E-74 T 25-04-2017 A4U88_RS06520 7337b3c1017c2e26aa37356f1284f5dc 270 Pfam PF03180 NLPA lipoprotein 32 270 1.5E-90 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS03715 4beeade45888404fc38ab808c0a1d106 453 Pfam PF02378 Phosphotransferase system, EIIC 30 363 2.3E-43 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS03715 4beeade45888404fc38ab808c0a1d106 453 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 12 438 3.5E-157 T 25-04-2017 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 A4U88_RS03715 4beeade45888404fc38ab808c0a1d106 453 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 12 438 3.5E-157 T 25-04-2017 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 A4U88_RS03715 4beeade45888404fc38ab808c0a1d106 453 PIRSF PIRSF006351 1 448 1.3E-125 T 25-04-2017 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 Gene3D G3DSA:3.40.30.10 169 240 1.3E-27 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 PRINTS PR00160 Glutaredoxin signature 214 227 1.2E-14 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 PRINTS PR00160 Glutaredoxin signature 228 241 1.2E-14 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 PRINTS PR00160 Glutaredoxin signature 173 191 1.2E-14 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 25-04-2017 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 Gene3D G3DSA:3.40.30.10 2 163 2.1E-64 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 SUPERFAMILY SSF52833 2 241 6.09E-47 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 Pfam PF00462 Glutaredoxin 173 231 1.5E-19 T 25-04-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 Pfam PF08534 Redoxin 5 160 5.2E-34 T 25-04-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 A4U88_RS23460 a9747c71cf42e5d1c205dde1720c630a 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 242 1.5E-39 T 25-04-2017 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 A4U88_RS08885 3c106c2afa4d86dc8ef8a954db885125 74 Pfam PF10769 Protein of unknown function (DUF2594) 1 74 2.1E-39 T 25-04-2017 IPR019705 Protein of unknown function DUF2594 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 Gene3D G3DSA:3.30.70.1250 114 235 6.2E-53 T 25-04-2017 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 Pfam PF01676 Metalloenzyme superfamily 2 398 1.2E-42 T 25-04-2017 IPR006124 Metalloenzyme GO:0003824|GO:0046872 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 405 1.2E-192 T 25-04-2017 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 PIRSF PIRSF001491 1 407 7.2E-164 T 25-04-2017 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 SUPERFAMILY SSF143856 117 235 9.55E-50 T 25-04-2017 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 55.491 T 25-04-2017 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 SUPERFAMILY SSF53649 1 114 7.85E-72 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 SUPERFAMILY SSF53649 236 407 7.85E-72 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 Gene3D G3DSA:3.40.720.10 1 113 4.3E-73 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS02890 9e2b82e1c01a66a9044beac7cdc638ee 407 Gene3D G3DSA:3.40.720.10 240 406 4.3E-73 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS18980 984ecb135d3d8fd92c46409f1829a575 228 Pfam PF12431 Transcriptional regulator 135 161 6.5E-5 T 25-04-2017 IPR028141 Transcriptional regulator A4U88_RS18980 984ecb135d3d8fd92c46409f1829a575 228 SUPERFAMILY SSF52172 6 136 2.13E-30 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS18980 984ecb135d3d8fd92c46409f1829a575 228 PIRSF PIRSF006171 4 228 1.1E-64 T 25-04-2017 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 A4U88_RS18980 984ecb135d3d8fd92c46409f1829a575 228 Gene3D G3DSA:3.40.50.2300 6 128 7.9E-26 T 25-04-2017 A4U88_RS18980 984ecb135d3d8fd92c46409f1829a575 228 SMART SM00448 6 119 2.0E-20 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS18980 984ecb135d3d8fd92c46409f1829a575 228 Pfam PF00072 Response regulator receiver domain 8 119 2.5E-21 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS12260 0c4c23a32ea9557f1569dbd48edbac49 345 Pfam PF00005 ABC transporter 19 163 5.4E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12260 0c4c23a32ea9557f1569dbd48edbac49 345 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS12260 0c4c23a32ea9557f1569dbd48edbac49 345 SUPERFAMILY SSF50331 243 336 1.64E-6 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS12260 0c4c23a32ea9557f1569dbd48edbac49 345 Gene3D G3DSA:3.40.50.300 4 235 4.0E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12260 0c4c23a32ea9557f1569dbd48edbac49 345 SMART SM00382 28 213 3.7E-19 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12260 0c4c23a32ea9557f1569dbd48edbac49 345 SUPERFAMILY SSF52540 4 240 2.72E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 SMART SM00862 144 217 3.2E-16 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 SUPERFAMILY SSF46894 121 218 8.79E-18 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 SUPERFAMILY SSF52172 1 132 4.27E-38 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 217 1.3E-17 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 Gene3D G3DSA:3.40.50.2300 1 119 3.2E-38 T 25-04-2017 A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 SMART SM00448 1 112 9.0E-40 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 Pfam PF00072 Response regulator receiver domain 4 113 1.2E-26 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17060 334a08b6e2d8f92b3df96767052398ce 224 Gene3D G3DSA:1.10.10.10 127 218 3.0E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00080 2fb6ad162f8216650357e1d0bcfda3a1 687 Gene3D G3DSA:3.20.20.80 186 652 4.5E-91 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS00080 2fb6ad162f8216650357e1d0bcfda3a1 687 PIRSF PIRSF036917 1 685 0.0 T 25-04-2017 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 A4U88_RS00080 2fb6ad162f8216650357e1d0bcfda3a1 687 Pfam PF00128 Alpha amylase, catalytic domain 227 605 1.3E-41 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS00080 2fb6ad162f8216650357e1d0bcfda3a1 687 SUPERFAMILY SSF51445 178 652 7.04E-76 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS00080 2fb6ad162f8216650357e1d0bcfda3a1 687 SMART SM00642 194 646 1.3E-75 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 Pfam PF00072 Response regulator receiver domain 4 112 1.8E-23 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 Gene3D G3DSA:3.40.50.2300 2 116 7.4E-29 T 25-04-2017 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 SMART SM00448 1 112 2.3E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 Gene3D G3DSA:2.20.25.10 206 244 6.0E-15 T 25-04-2017 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 Gene3D G3DSA:2.40.50.40 137 204 8.7E-23 T 25-04-2017 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 SUPERFAMILY SSF52172 2 123 1.08E-25 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 SMART SM00850 145 243 1.2E-35 T 25-04-2017 IPR007492 LytTR DNA-binding domain GO:0003677 A4U88_RS17405 36792c7b195f1f0b455cad60ddc05b6c 244 Pfam PF04397 LytTr DNA-binding domain 146 242 9.3E-31 T 25-04-2017 IPR007492 LytTR DNA-binding domain GO:0003677 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 SUPERFAMILY SSF56601 13 281 1.54E-74 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 Gene3D G3DSA:2.60.410.10 284 374 2.6E-26 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 149 162 9.7E-17 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 9.7E-17 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 122 139 9.7E-17 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 SMART SM00936 284 374 9.9E-28 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 263 9.2E-92 T 25-04-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 Gene3D G3DSA:3.40.710.10 30 281 1.3E-91 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 285 373 3.5E-20 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS12785 dbea4dcdd80ac0809f23afd65bf9efb4 389 SUPERFAMILY SSF69189 285 376 1.51E-21 T 25-04-2017 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82866 812 1037 5.89E-42 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:1.10.3850.10 284 501 4.7E-63 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82693 277 333 6.98E-27 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82693 139 184 6.98E-27 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82714 729 815 3.53E-18 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:1.20.1640.10 858 1043 1.5E-42 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:3.30.70.1430 579 677 4.0E-20 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1045 0.0 T 25-04-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82693 575 678 1.52E-20 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Pfam PF00873 AcrB/AcrD/AcrF family 3 1034 0.0 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:3.30.2090.10 184 278 1.8E-30 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:3.30.2090.10 729 817 1.5E-19 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82714 185 275 4.05E-22 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82693 41 134 3.14E-27 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:3.30.70.1430 41 140 1.0E-32 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 SUPERFAMILY SSF82866 299 499 2.22E-50 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 562 579 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 PRINTS PR00702 Acriflavin resistance protein family signature 631 645 1.8E-88 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:3.30.70.1440 679 727 3.6E-16 T 25-04-2017 A4U88_RS09325 56c3fd162d1c72feecb78ea6bed8c44f 1047 Gene3D G3DSA:3.30.70.1440 824 857 3.6E-16 T 25-04-2017 A4U88_RS08155 10c01729dd5d178ce436d7b83acf8831 338 Pfam PF01212 Beta-eliminating lyase 4 284 4.4E-95 T 25-04-2017 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 A4U88_RS08155 10c01729dd5d178ce436d7b83acf8831 338 Gene3D G3DSA:3.40.640.10 2 246 8.5E-85 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS08155 10c01729dd5d178ce436d7b83acf8831 338 PIRSF PIRSF017617 1 338 6.9E-130 T 25-04-2017 IPR023603 Threonine aldolase A4U88_RS08155 10c01729dd5d178ce436d7b83acf8831 338 SUPERFAMILY SSF53383 3 336 1.58E-113 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS08155 10c01729dd5d178ce436d7b83acf8831 338 Gene3D G3DSA:3.90.1150.10 247 336 9.9E-22 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Gene3D G3DSA:2.140.10.10 158 531 3.9E-160 T 25-04-2017 IPR027295 Quinoprotein alcohol dehydrogenase-like domain A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Gene3D G3DSA:2.140.10.10 566 789 3.9E-160 T 25-04-2017 IPR027295 Quinoprotein alcohol dehydrogenase-like domain A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 SUPERFAMILY SSF50998 555 787 2.75E-157 T 25-04-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 SUPERFAMILY SSF50998 158 519 2.75E-157 T 25-04-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 13 787 0.0 T 25-04-2017 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Pfam PF01011 PQQ enzyme repeat 220 248 4.6E-8 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Pfam PF01011 PQQ enzyme repeat 352 384 3.1E-5 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Pfam PF01011 PQQ enzyme repeat 663 696 3.1E-6 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Pfam PF01011 PQQ enzyme repeat 719 753 6.1E-5 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 Pfam PF01011 PQQ enzyme repeat 440 465 1.2E-5 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 SMART SM00564 336 377 0.013 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 SMART SM00564 479 510 800.0 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 SMART SM00564 710 743 0.014 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 SMART SM00564 215 246 0.0014 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS15380 b1db55cc9d5b8ccdaf87a8ffe1e2cf10 790 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 401 422 - T 25-04-2017 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 SUPERFAMILY SSF52833 2 82 2.05E-28 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 25-04-2017 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 PRINTS PR00160 Glutaredoxin signature 46 59 6.8E-18 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 PRINTS PR00160 Glutaredoxin signature 60 73 6.8E-18 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 PRINTS PR00160 Glutaredoxin signature 4 22 6.8E-18 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 1.1E-35 T 25-04-2017 IPR011900 Glutaredoxin, GrxC GO:0045454 A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 Gene3D G3DSA:3.40.30.10 1 73 2.8E-30 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS23675 831d1da30060750b10dc3f02b4af26e8 82 Pfam PF00462 Glutaredoxin 6 63 4.4E-23 T 25-04-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 A4U88_RS07535 b4c270b1e5176a4818bb391e038cbe92 280 Pfam PF00756 Putative esterase 26 261 1.2E-66 T 25-04-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 A4U88_RS07535 b4c270b1e5176a4818bb391e038cbe92 280 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 278 1.2E-119 T 25-04-2017 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 A4U88_RS07535 b4c270b1e5176a4818bb391e038cbe92 280 SUPERFAMILY SSF53474 5 278 3.86E-90 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS07535 b4c270b1e5176a4818bb391e038cbe92 280 Gene3D G3DSA:3.40.50.1820 5 278 9.9E-79 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 SUPERFAMILY SSF55073 242 396 6.51E-47 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 233 393 5.1E-36 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 SMART SM00091 110 176 3.8E-6 T 25-04-2017 IPR000014 PAS domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 389 3.2E-45 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 Gene3D G3DSA:3.20.20.450 408 656 2.0E-92 T 25-04-2017 IPR001633 EAL domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 Pfam PF13426 PAS domain 122 224 1.1E-9 T 25-04-2017 IPR000014 PAS domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 Gene3D G3DSA:3.30.450.20 110 217 2.0E-20 T 25-04-2017 A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 SMART SM00267 225 394 2.2E-64 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 Pfam PF00563 EAL domain 411 644 7.5E-69 T 25-04-2017 IPR001633 EAL domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 SMART SM00052 404 649 8.0E-111 T 25-04-2017 IPR001633 EAL domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 Gene3D G3DSA:3.30.70.270 238 402 4.5E-54 T 25-04-2017 A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 SUPERFAMILY SSF141868 411 658 5.62E-85 T 25-04-2017 IPR001633 EAL domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 114 232 1.9E-15 T 25-04-2017 IPR000014 PAS domain A4U88_RS23270 8d1ca0971b3fcdc76e0de64d58f5c2ab 664 SUPERFAMILY SSF55785 123 233 3.22E-18 T 25-04-2017 IPR000014 PAS domain A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 Gene3D G3DSA:3.30.70.940 2 101 7.1E-16 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 3.6E-62 T 25-04-2017 IPR010215 Transcription antitermination protein RfaH GO:0006355 A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 SMART SM00738 1 100 8.1E-31 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 SMART SM00739 109 136 0.0097 T 25-04-2017 IPR005824 KOW A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 Pfam PF02357 Transcription termination factor nusG 3 96 1.1E-17 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 47.019 T 25-04-2017 IPR010215 Transcription antitermination protein RfaH GO:0006355 A4U88_RS01015 b3a95525a4a44061f7625125b6c0a23a 162 SUPERFAMILY SSF82679 2 101 2.62E-27 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Gene3D G3DSA:3.40.309.10 899 1091 1.6E-47 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Pfam PF00171 Aldehyde dehydrogenase family 661 1106 6.4E-116 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 SUPERFAMILY SSF51730 263 618 4.32E-123 T 25-04-2017 IPR029041 FAD-linked oxidoreductase-like A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 SUPERFAMILY SSF47598 3 45 1.33E-10 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Gene3D G3DSA:1.20.5.550 88 139 3.9E-26 T 25-04-2017 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Gene3D G3DSA:3.20.20.220 262 617 1.3E-121 T 25-04-2017 IPR029041 FAD-linked oxidoreductase-like A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 PIRSF PIRSF000197 75 1323 0.0 T 25-04-2017 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 SUPERFAMILY SSF53720 633 1111 1.57E-128 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 911 922 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Gene3D G3DSA:3.40.605.10 657 898 1.5E-69 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Pfam PF01619 Proline dehydrogenase 271 570 1.0E-98 T 25-04-2017 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 SUPERFAMILY SSF81935 89 262 2.88E-66 T 25-04-2017 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 883 890 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 149 260 1.0E-45 T 25-04-2017 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 Gene3D G3DSA:1.10.2060.10 143 261 1.2E-54 T 25-04-2017 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 A4U88_RS14250 39e8fc1356c2af6f4e9353a8c54d9c53 1323 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 611 1113 5.3E-250 T 25-04-2017 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 A4U88_RS03460 3175d9babbe500d8583423c7dd93de51 198 SMART SM00644 16 166 2.4E-58 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS03460 3175d9babbe500d8583423c7dd93de51 198 Gene3D G3DSA:3.40.80.10 3 180 4.1E-67 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS03460 3175d9babbe500d8583423c7dd93de51 198 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 29 167 7.9E-18 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS03460 3175d9babbe500d8583423c7dd93de51 198 SUPERFAMILY SSF55846 2 179 9.42E-68 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 SMART SM00534 607 794 1.5E-123 T 25-04-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Gene3D G3DSA:3.30.420.110 129 258 7.2E-44 T 25-04-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Gene3D G3DSA:1.10.1420.10 318 477 6.6E-54 T 25-04-2017 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 SUPERFAMILY SSF53150 117 269 2.09E-43 T 25-04-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 848 0.0 T 25-04-2017 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Pfam PF00488 MutS domain V 610 797 1.6E-88 T 25-04-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Pfam PF05192 MutS domain III 272 559 1.0E-40 T 25-04-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 SUPERFAMILY SSF48334 270 565 2.75E-90 T 25-04-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 PIRSF PIRSF037677 3 841 5.7E-155 T 25-04-2017 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 25-04-2017 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Gene3D G3DSA:3.40.1170.10 3 123 1.4E-52 T 25-04-2017 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Pfam PF05190 MutS family domain IV 428 517 2.6E-28 T 25-04-2017 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 SUPERFAMILY SSF52540 567 798 1.29E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Pfam PF01624 MutS domain I 11 122 1.2E-42 T 25-04-2017 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Gene3D G3DSA:3.40.50.300 568 797 2.4E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Pfam PF05188 MutS domain II 131 256 3.2E-34 T 25-04-2017 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 SUPERFAMILY SSF55271 5 116 5.49E-43 T 25-04-2017 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 SMART SM00533 286 591 1.7E-106 T 25-04-2017 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 A4U88_RS03685 8dd87a80c458ab83f0bd235849960c6d 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 843 25.45 T 25-04-2017 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 A4U88_RS15300 dd29b500bd4b51ff1a1ea7596a729500 146 Gene3D G3DSA:3.10.129.10 8 138 9.7E-49 T 25-04-2017 IPR029069 HotDog domain A4U88_RS15300 dd29b500bd4b51ff1a1ea7596a729500 146 Pfam PF03061 Thioesterase superfamily 54 128 7.8E-19 T 25-04-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 A4U88_RS15300 dd29b500bd4b51ff1a1ea7596a729500 146 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 25 137 1.5E-47 T 25-04-2017 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 A4U88_RS15300 dd29b500bd4b51ff1a1ea7596a729500 146 SUPERFAMILY SSF54637 7 132 6.66E-32 T 25-04-2017 IPR029069 HotDog domain A4U88_RS15300 dd29b500bd4b51ff1a1ea7596a729500 146 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 22 135 8.3E-34 T 25-04-2017 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-75105 A4U88_RS08380 3a11259ef7d306176efd289ea266990a 298 SUPERFAMILY SSF56112 11 268 1.9E-21 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS08380 3a11259ef7d306176efd289ea266990a 298 Gene3D G3DSA:3.90.1200.10 94 239 3.4E-7 T 25-04-2017 A4U88_RS08380 3a11259ef7d306176efd289ea266990a 298 Pfam PF01636 Phosphotransferase enzyme family 64 243 3.3E-8 T 25-04-2017 IPR002575 Aminoglycoside phosphotransferase A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 58.486 T 25-04-2017 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 Gene3D G3DSA:3.40.309.10 266 444 2.3E-69 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 Pfam PF00171 Aldehyde dehydrogenase family 15 479 1.7E-179 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 Gene3D G3DSA:3.40.605.10 8 265 1.8E-104 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 SUPERFAMILY SSF53720 7 482 7.72E-172 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS07360 43eefa59f4f8ae6cf04d8644bac07a1a 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 7.2E-233 T 25-04-2017 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494 A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.339 T 25-04-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 25-04-2017 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 25-04-2017 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 SUPERFAMILY SSF53335 19 248 4.34E-52 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 Gene3D G3DSA:3.40.50.150 24 247 1.8E-58 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 20 250 5.1E-106 T 25-04-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 A4U88_RS00975 7286aeced8487da97613cf6da5c7f5bb 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 3.4E-86 T 25-04-2017 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 Gene3D G3DSA:3.40.50.1970 2 172 6.2E-67 T 25-04-2017 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 Pfam PF01761 3-dehydroquinate synthase 67 325 5.2E-109 T 25-04-2017 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 Gene3D G3DSA:1.20.1090.10 173 355 7.9E-66 T 25-04-2017 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 SUPERFAMILY SSF56796 4 356 3.66E-116 T 25-04-2017 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 PIRSF PIRSF001455 10 357 1.0E-104 T 25-04-2017 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 349 1.1E-119 T 25-04-2017 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 A4U88_RS22645 3f9c6677341693867f8ec8cd27d65121 366 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 358 42.783 T 25-04-2017 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 25-04-2017 IPR013852 Translation elongation factor P/YeiP, conserved site A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 125 3.8E-13 T 25-04-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 45.888 T 25-04-2017 IPR011897 Translation elongation factor P-like, YeiP A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 SMART SM01185 69 125 1.5E-15 T 25-04-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Gene3D G3DSA:2.40.50.140 132 189 5.1E-22 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 SMART SM00841 133 188 8.3E-25 T 25-04-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 SUPERFAMILY SSF50104 1 64 1.75E-10 T 25-04-2017 IPR008991 Translation protein SH3-like domain A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 5.6E-97 T 25-04-2017 IPR011897 Translation elongation factor P-like, YeiP A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Gene3D G3DSA:2.30.30.30 1 64 1.1E-14 T 25-04-2017 IPR014722 Ribosomal protein L2 domain 2 A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 3.8E-18 T 25-04-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 SUPERFAMILY SSF50249 67 130 2.74E-11 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 61 1.9E-16 T 25-04-2017 IPR013185 Translation elongation factor, KOW-like A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 Gene3D G3DSA:2.40.50.140 67 131 7.9E-14 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 PIRSF PIRSF005901 1 190 7.2E-59 T 25-04-2017 IPR020599 Translation elongation factor P/YeiP A4U88_RS16375 3823e5455c1a1a910d35977602f0d0b3 190 SUPERFAMILY SSF50249 132 189 8.39E-14 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS05080 db1d3b39c8d15100aed99273c2db30b2 65 Pfam PF01292 Prokaryotic cytochrome b561 9 65 1.1E-6 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS05080 db1d3b39c8d15100aed99273c2db30b2 65 SUPERFAMILY SSF81342 4 65 2.51E-7 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 SUPERFAMILY SSF53955 43 257 7.31E-82 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Pfam PF17092 Penicillin-binding protein OB-like domain 316 425 7.5E-31 T 25-04-2017 IPR031376 Penicillin-binding protein, OB-like domain A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Pfam PF00912 Transglycosylase 55 229 1.9E-65 T 25-04-2017 IPR001264 Glycosyl transferase, family 51 A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Gene3D G3DSA:2.40.50.140 347 421 9.5E-21 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 786 2.4E-172 T 25-04-2017 A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 SUPERFAMILY SSF56601 422 610 3.76E-113 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 SUPERFAMILY SSF56601 211 233 3.76E-113 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 SUPERFAMILY SSF56601 262 313 3.76E-113 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 SUPERFAMILY SSF56601 672 836 3.76E-113 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Gene3D G3DSA:3.40.710.10 673 834 5.2E-133 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Gene3D G3DSA:3.40.710.10 233 313 5.2E-133 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Gene3D G3DSA:3.40.710.10 422 611 5.2E-133 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 609 5.4E-24 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS22680 2d9d53e7f1945fce39c65289c9c810dd 852 Gene3D G3DSA:1.10.3810.10 55 232 3.3E-76 T 25-04-2017 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 268 1.8E-106 T 25-04-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 35.277 T 25-04-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 SUPERFAMILY SSF51735 240 272 6.3E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 SUPERFAMILY SSF51735 5 130 6.3E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 1.5E-42 T 25-04-2017 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 Gene3D G3DSA:3.40.50.720 4 167 3.5E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 25-04-2017 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 4.4E-43 T 25-04-2017 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 PIRSF PIRSF000161 4 272 3.3E-91 T 25-04-2017 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS03120 31c9ce7ffc61e93f864853cdd53ce9c1 273 SUPERFAMILY SSF55347 131 240 6.32E-37 T 25-04-2017 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 Pfam PF12833 Helix-turn-helix domain 209 287 2.0E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 SMART SM00342 203 286 1.9E-32 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 SUPERFAMILY SSF46689 240 288 1.94E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 SUPERFAMILY SSF46689 189 237 6.57E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 Gene3D G3DSA:1.10.10.60 242 287 9.2E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 3.1E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 3.1E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS11495 6ddbf87553e34f40f1a95732cf5d402f 289 Gene3D G3DSA:1.10.10.60 183 241 2.8E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09025 d382b9d56bdeea9538d47fbe14856331 852 SUPERFAMILY SSF53448 253 541 1.41E-26 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS09025 d382b9d56bdeea9538d47fbe14856331 852 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 75 754 52.052 T 25-04-2017 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 A4U88_RS09025 d382b9d56bdeea9538d47fbe14856331 852 Pfam PF00535 Glycosyl transferase family 2 255 437 1.1E-23 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS09025 d382b9d56bdeea9538d47fbe14856331 852 Gene3D G3DSA:3.90.550.10 271 398 2.6E-4 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 SUPERFAMILY SSF54292 1 106 1.62E-30 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 8.6E-32 T 25-04-2017 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 Gene3D G3DSA:3.10.20.30 1 106 3.8E-37 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 8.7E-10 T 25-04-2017 A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 Gene3D G3DSA:1.10.1060.10 108 236 1.3E-47 T 25-04-2017 A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 7.7E-91 T 25-04-2017 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05965 9fdf85d487baca4d86596f2f11d148bf 238 SUPERFAMILY SSF46548 107 237 1.92E-40 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS15820 4ccf7c69401df4b9c8ac8fd5946cc68a 396 Gene3D G3DSA:3.60.120.10 59 392 4.6E-91 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS15820 4ccf7c69401df4b9c8ac8fd5946cc68a 396 SUPERFAMILY SSF56322 48 391 1.19E-95 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS15820 4ccf7c69401df4b9c8ac8fd5946cc68a 396 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 108 388 1.5E-91 T 25-04-2017 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 A4U88_RS15820 4ccf7c69401df4b9c8ac8fd5946cc68a 396 Pfam PF00425 chorismate binding enzyme 127 381 1.2E-75 T 25-04-2017 IPR015890 Chorismate-utilising enzyme, C-terminal A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 2.6E-146 T 25-04-2017 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 SUPERFAMILY SSF140356 3 105 5.89E-34 T 25-04-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 SUPERFAMILY SSF143724 107 313 2.55E-59 T 25-04-2017 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 34.563 T 25-04-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Pfam PF02503 Polyphosphate kinase middle domain 119 319 7.0E-42 T 25-04-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Gene3D G3DSA:3.30.870.10 315 499 9.7E-76 T 25-04-2017 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 SUPERFAMILY SSF56024 500 681 4.26E-69 T 25-04-2017 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 1.8E-31 T 25-04-2017 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 SUPERFAMILY SSF56024 315 497 1.95E-57 T 25-04-2017 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Gene3D G3DSA:3.30.870.10 500 681 7.6E-70 T 25-04-2017 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 Gene3D G3DSA:3.30.1840.10 106 300 6.8E-52 T 25-04-2017 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 1.2E-259 T 25-04-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 A4U88_RS18030 6165d7e7288b873dc9cfc9ebc0c5a135 687 PIRSF PIRSF015589 1 686 7.2E-244 T 25-04-2017 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 A4U88_RS00710 82e49a7033b8c4da1073069555421378 156 Gene3D G3DSA:3.10.129.10 13 155 4.1E-33 T 25-04-2017 IPR029069 HotDog domain A4U88_RS00710 82e49a7033b8c4da1073069555421378 156 SUPERFAMILY SSF54637 13 155 5.42E-27 T 25-04-2017 IPR029069 HotDog domain A4U88_RS00710 82e49a7033b8c4da1073069555421378 156 Pfam PF03061 Thioesterase superfamily 59 144 7.7E-18 T 25-04-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 A4U88_RS00710 82e49a7033b8c4da1073069555421378 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 154 2.7E-16 T 25-04-2017 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-75105 A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 SUPERFAMILY SSF46785 17 85 1.32E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 81 7.2E-13 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 Gene3D G3DSA:1.10.10.10 18 82 3.6E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 Gene3D G3DSA:3.40.640.10 120 340 6.7E-52 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 Gene3D G3DSA:3.90.1150.10 375 445 3.8E-7 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 SUPERFAMILY SSF53383 71 446 1.2E-69 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 Pfam PF00155 Aminotransferase class I and II 92 433 6.8E-23 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS23220 543693f39348e11bd5212318d1465eb8 449 SMART SM00345 22 81 1.8E-14 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS08235 9757a5d1f2e6d7a8dbb79e8686bd46ed 205 Gene3D G3DSA:3.40.30.10 1 88 1.8E-23 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS08235 9757a5d1f2e6d7a8dbb79e8686bd46ed 205 Gene3D G3DSA:1.20.1050.10 89 188 6.0E-36 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS08235 9757a5d1f2e6d7a8dbb79e8686bd46ed 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 105 188 6.2E-12 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS08235 9757a5d1f2e6d7a8dbb79e8686bd46ed 205 SUPERFAMILY SSF52833 1 79 1.91E-15 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS08235 9757a5d1f2e6d7a8dbb79e8686bd46ed 205 SUPERFAMILY SSF47616 81 197 2.23E-27 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS08235 9757a5d1f2e6d7a8dbb79e8686bd46ed 205 Pfam PF02798 Glutathione S-transferase, N-terminal domain 1 74 1.2E-5 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS01915 655ae5c00d3003bf1ca935ebc0d5d024 97 Gene3D G3DSA:3.30.110.60 1 94 7.4E-35 T 25-04-2017 IPR001890 RNA-binding, CRM domain GO:0003723 A4U88_RS01915 655ae5c00d3003bf1ca935ebc0d5d024 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 5.8E-23 T 25-04-2017 IPR001890 RNA-binding, CRM domain GO:0003723 A4U88_RS01915 655ae5c00d3003bf1ca935ebc0d5d024 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 2.6E-41 T 25-04-2017 IPR017924 RNA-binding protein YhbY GO:0003723 A4U88_RS01915 655ae5c00d3003bf1ca935ebc0d5d024 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 1.0E-43 T 25-04-2017 IPR001890 RNA-binding, CRM domain GO:0003723 A4U88_RS01915 655ae5c00d3003bf1ca935ebc0d5d024 97 SUPERFAMILY SSF75471 1 95 5.89E-32 T 25-04-2017 IPR001890 RNA-binding, CRM domain GO:0003723 A4U88_RS01915 655ae5c00d3003bf1ca935ebc0d5d024 97 SMART SM01103 3 86 2.4E-41 T 25-04-2017 IPR001890 RNA-binding, CRM domain GO:0003723 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 SUPERFAMILY SSF56176 6 267 5.01E-72 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Pfam PF01565 FAD binding domain 43 162 4.7E-9 T 25-04-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Gene3D G3DSA:3.30.465.10 103 264 2.2E-82 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Pfam PF09330 D-lactate dehydrogenase, membrane binding 274 563 1.2E-150 T 25-04-2017 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 PIRSF PIRSF000101 1 565 7.7E-296 T 25-04-2017 IPR012256 D-lactate dehydrogenase GO:0004457|GO:0005887|GO:0006089|GO:0050660|GO:0051287 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Gene3D G3DSA:3.30.43.10 5 84 2.7E-8 T 25-04-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Gene3D G3DSA:3.30.1370.20 431 515 8.5E-47 T 25-04-2017 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 SUPERFAMILY SSF55103 272 563 2.83E-118 T 25-04-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Gene3D G3DSA:3.30.70.610 334 430 2.8E-23 T 25-04-2017 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 A4U88_RS06565 751407486506a2afd7d5151a33c74eea 568 Gene3D G3DSA:3.30.70.610 265 333 3.3E-23 T 25-04-2017 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.1.28|MetaCyc: PWY-6454|MetaCyc: PWY-6901 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 PRINTS PR00355 Adrenodoxin signature 42 52 1.9E-10 T 25-04-2017 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 PRINTS PR00355 Adrenodoxin signature 60 74 1.9E-10 T 25-04-2017 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 PRINTS PR00355 Adrenodoxin signature 83 91 1.9E-10 T 25-04-2017 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 13 91 9.7E-15 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 Gene3D G3DSA:3.10.20.30 5 108 1.1E-33 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 25-04-2017 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 SUPERFAMILY SSF54292 4 109 1.62E-33 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS18425 970d05974c84e8cc85c4632986d57e9e 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 3.2E-62 T 25-04-2017 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 A4U88_RS22835 174f99daf814c501fb69aa51bc522db1 476 Pfam PF00534 Glycosyl transferases group 1 288 448 1.8E-13 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS22835 174f99daf814c501fb69aa51bc522db1 476 Gene3D G3DSA:3.40.50.2000 250 457 2.0E-69 T 25-04-2017 A4U88_RS22835 174f99daf814c501fb69aa51bc522db1 476 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 45.727 T 25-04-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 A4U88_RS22835 174f99daf814c501fb69aa51bc522db1 476 Pfam PF08323 Starch synthase catalytic domain 2 234 1.5E-70 T 25-04-2017 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 A4U88_RS22835 174f99daf814c501fb69aa51bc522db1 476 SUPERFAMILY SSF53756 5 476 5.93E-115 T 25-04-2017 A4U88_RS22835 174f99daf814c501fb69aa51bc522db1 476 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 476 2.9E-169 T 25-04-2017 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 A4U88_RS18210 963d564dd5123bba7e505883cb2a94a5 152 PIRSF PIRSF009103 3 152 1.2E-53 T 25-04-2017 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 A4U88_RS18210 963d564dd5123bba7e505883cb2a94a5 152 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 35 150 4.5E-48 T 25-04-2017 A4U88_RS18210 963d564dd5123bba7e505883cb2a94a5 152 SUPERFAMILY SSF89872 28 152 3.27E-47 T 25-04-2017 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 A4U88_RS18210 963d564dd5123bba7e505883cb2a94a5 152 Gene3D G3DSA:3.40.1420.10 28 152 1.3E-54 T 25-04-2017 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 A4U88_RS04930 d90eff36d0dbc35fbcba46ffe58d168e 492 Gene3D G3DSA:1.20.1250.20 16 199 5.2E-20 T 25-04-2017 A4U88_RS04930 d90eff36d0dbc35fbcba46ffe58d168e 492 SUPERFAMILY SSF103473 9 405 9.42E-45 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS04930 d90eff36d0dbc35fbcba46ffe58d168e 492 Pfam PF07690 Major Facilitator Superfamily 17 366 1.1E-32 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS04930 d90eff36d0dbc35fbcba46ffe58d168e 492 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 6.5E-119 T 25-04-2017 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 GO:0016020 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 A4U88_RS04930 d90eff36d0dbc35fbcba46ffe58d168e 492 Gene3D G3DSA:1.20.1250.20 221 403 9.9E-14 T 25-04-2017 A4U88_RS22940 b4382b55308248454fa675969fac9503 501 Gene3D G3DSA:3.40.309.10 261 446 1.9E-61 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS22940 b4382b55308248454fa675969fac9503 501 Pfam PF00171 Aldehyde dehydrogenase family 16 480 2.5E-135 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS22940 b4382b55308248454fa675969fac9503 501 Gene3D G3DSA:3.40.605.10 2 260 3.8E-89 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS22940 b4382b55308248454fa675969fac9503 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 5 485 1.6E-196 T 25-04-2017 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 A4U88_RS22940 b4382b55308248454fa675969fac9503 501 SUPERFAMILY SSF53720 2 485 4.19E-143 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 SUPERFAMILY SSF63411 266 503 1.65E-71 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 SUPERFAMILY SSF63411 34 263 4.44E-52 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 76 99 - T 25-04-2017 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Gene3D G3DSA:3.30.830.10 274 507 9.5E-69 T 25-04-2017 IPR011237 Peptidase M16 domain GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Gene3D G3DSA:3.30.830.10 735 956 2.0E-56 T 25-04-2017 IPR011237 Peptidase M16 domain GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Pfam PF16187 Middle or third domain of peptidase_M16 401 676 4.1E-58 T 25-04-2017 IPR032632 Peptidase M16, middle/third domain A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Gene3D G3DSA:3.30.830.10 32 267 1.2E-64 T 25-04-2017 IPR011237 Peptidase M16 domain GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Pfam PF00675 Insulinase (Peptidase family M16) 56 192 5.9E-35 T 25-04-2017 IPR011765 Peptidase M16, N-terminal A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 SUPERFAMILY SSF63411 742 955 3.84E-47 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Gene3D G3DSA:3.30.830.10 508 734 1.4E-62 T 25-04-2017 IPR011237 Peptidase M16 domain GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 SUPERFAMILY SSF63411 505 725 3.32E-48 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Pfam PF05193 Peptidase M16 inactive domain 217 393 2.6E-20 T 25-04-2017 IPR007863 Peptidase M16, C-terminal A4U88_RS19425 76d2b04167bd8752a3b39a0e973ad320 962 Pfam PF05193 Peptidase M16 inactive domain 683 859 3.4E-8 T 25-04-2017 IPR007863 Peptidase M16, C-terminal A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 57 - T 25-04-2017 IPR010916 TonB box, conserved site A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 50 680 1.9E-176 T 25-04-2017 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 Gene3D G3DSA:2.170.130.10 50 167 1.7E-36 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 Gene3D G3DSA:2.40.170.20 168 680 2.8E-82 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 51 680 2.4E-139 T 25-04-2017 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 SUPERFAMILY SSF56935 50 680 1.67E-106 T 25-04-2017 A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 167 2.7E-25 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS10610 5489f22063cca3a5f94484c8ec495242 680 Pfam PF00593 TonB dependent receptor 432 678 7.3E-30 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 SUPERFAMILY SSF53901 215 412 1.08E-74 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 3.7E-41 T 25-04-2017 IPR014031 Beta-ketoacyl synthase, C-terminal A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 1.8E-61 T 25-04-2017 IPR014030 Beta-ketoacyl synthase, N-terminal A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 Gene3D G3DSA:3.40.47.10 263 412 1.8E-64 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 25-04-2017 IPR018201 Beta-ketoacyl synthase, active site A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 PIRSF PIRSF000447 1 413 1.3E-202 T 25-04-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 SMART SM00825 Beta-ketoacyl synthase 6 413 2.2E-15 T 25-04-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 SUPERFAMILY SSF53901 4 252 3.76E-77 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 Gene3D G3DSA:3.40.47.10 2 260 9.1E-78 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09215 18d8071bc6f5128578792809002482e6 413 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 411 2.9E-196 T 25-04-2017 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 A4U88_RS05630 be58ec1cbcdef4c3c8e163a64268f416 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 7.5E-28 T 25-04-2017 A4U88_RS05630 be58ec1cbcdef4c3c8e163a64268f416 105 SUPERFAMILY SSF81301 4 105 9.97E-36 T 25-04-2017 A4U88_RS05630 be58ec1cbcdef4c3c8e163a64268f416 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 23.718 T 25-04-2017 IPR004394 Protein Iojap/ribosomal silencing factor RsfS A4U88_RS05630 be58ec1cbcdef4c3c8e163a64268f416 105 Gene3D G3DSA:3.30.460.10 4 105 2.6E-37 T 25-04-2017 A4U88_RS05630 be58ec1cbcdef4c3c8e163a64268f416 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 8 104 3.9E-37 T 25-04-2017 IPR004394 Protein Iojap/ribosomal silencing factor RsfS A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 SUPERFAMILY SSF52279 407 598 2.35E-7 T 25-04-2017 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 SUPERFAMILY SSF51445 3 381 2.74E-81 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 280 297 - T 25-04-2017 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 455 598 6.6E-6 T 25-04-2017 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 Gene3D G3DSA:3.20.20.300 18 378 3.5E-95 T 25-04-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 11 368 3.0E-91 T 25-04-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 A4U88_RS11135 7bf100a6c04839dbf720ea548be4db0b 598 Gene3D G3DSA:3.40.50.1700 390 597 1.3E-8 T 25-04-2017 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 A4U88_RS06460 93a3147d463a8b973844a689da5d2142 187 Pfam PF09335 SNARE associated Golgi protein 24 144 8.1E-17 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 Gene3D G3DSA:3.40.190.10 269 312 2.8E-63 T 25-04-2017 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 Gene3D G3DSA:3.40.190.10 24 131 2.8E-63 T 25-04-2017 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 Gene3D G3DSA:3.40.190.10 133 268 5.1E-23 T 25-04-2017 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 SUPERFAMILY SSF53850 25 344 4.39E-94 T 25-04-2017 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 Pfam PF13416 Bacterial extracellular solute-binding protein 41 311 3.8E-38 T 25-04-2017 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 292 318 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 122 138 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 5.3E-93 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS09785 fac2853503827aa782d5343714a1e191 347 PIRSF PIRSF019574 1 347 7.4E-128 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS13715 dbf9c8682278995f69a21242788308f4 546 Gene3D G3DSA:3.90.1200.10 268 312 4.7E-7 T 25-04-2017 A4U88_RS13715 dbf9c8682278995f69a21242788308f4 546 SUPERFAMILY SSF56112 101 159 2.75E-25 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS13715 dbf9c8682278995f69a21242788308f4 546 SUPERFAMILY SSF56112 194 427 2.75E-25 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS13715 dbf9c8682278995f69a21242788308f4 546 Pfam PF03109 ABC1 family 114 232 6.0E-34 T 25-04-2017 IPR004147 UbiB domain A4U88_RS09385 4d81c08e26ebac37153d98a09bc3ed0c 217 Pfam PF04391 Protein of unknown function (DUF533) 30 209 1.1E-53 T 25-04-2017 IPR007486 Inner membrane protein YebE A4U88_RS09385 4d81c08e26ebac37153d98a09bc3ed0c 217 SUPERFAMILY SSF158682 69 206 4.05E-18 T 25-04-2017 IPR029024 TerB-like A4U88_RS09385 4d81c08e26ebac37153d98a09bc3ed0c 217 Gene3D G3DSA:1.10.3680.10 67 207 3.8E-15 T 25-04-2017 IPR029024 TerB-like A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 2.4E-134 T 25-04-2017 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 SUPERFAMILY SSF48179 210 370 9.69E-41 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 SUPERFAMILY SSF48179 348 484 1.29E-40 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 SUPERFAMILY SSF51735 30 209 1.26E-57 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.7E-58 T 25-04-2017 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 Gene3D G3DSA:1.10.1040.10 361 481 3.3E-17 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 22 485 38.953 T 25-04-2017 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 Gene3D G3DSA:3.40.50.720 1 201 3.4E-75 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 9.3E-27 T 25-04-2017 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 A4U88_RS23315 6796ed0c01a89d158a131ecdf83a5eb3 491 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 482 6.5E-23 T 25-04-2017 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 A4U88_RS02775 a9b7329b1ce3b650a1a314ddd2e3b766 400 Pfam PF07690 Major Facilitator Superfamily 21 330 2.1E-31 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS02775 a9b7329b1ce3b650a1a314ddd2e3b766 400 SUPERFAMILY SSF103473 9 387 2.09E-49 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS02775 a9b7329b1ce3b650a1a314ddd2e3b766 400 Gene3D G3DSA:1.20.1250.20 17 193 1.4E-23 T 25-04-2017 A4U88_RS02775 a9b7329b1ce3b650a1a314ddd2e3b766 400 Gene3D G3DSA:1.20.1250.20 209 389 1.0E-13 T 25-04-2017 A4U88_RS21370 0bfdfd42775a26652565bfec886688a9 271 SUPERFAMILY SSF52540 8 237 2.06E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21370 0bfdfd42775a26652565bfec886688a9 271 Gene3D G3DSA:3.40.50.300 7 240 6.3E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21370 0bfdfd42775a26652565bfec886688a9 271 SMART SM00382 33 229 8.0E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS21370 0bfdfd42775a26652565bfec886688a9 271 Pfam PF00005 ABC transporter 25 172 3.1E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS21370 0bfdfd42775a26652565bfec886688a9 271 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 559 621 2.4E-11 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 2.6E-12 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 2.6E-12 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.6E-12 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 SUPERFAMILY SSF55124 501 626 4.91E-31 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Gene3D G3DSA:3.90.480.10 562 628 4.4E-9 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 SUPERFAMILY SSF51905 147 312 7.4E-28 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 SUPERFAMILY SSF56014 632 808 7.98E-48 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 3.1E-9 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 3.1E-9 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 3.1E-9 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Gene3D G3DSA:3.30.413.10 633 768 3.5E-30 T 25-04-2017 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Gene3D G3DSA:3.50.50.60 106 309 1.0E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 7.9E-6 T 25-04-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 7.9E-6 T 25-04-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Gene3D G3DSA:3.50.50.60 3 105 1.7E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 470 7.4E-15 T 25-04-2017 IPR007419 BFD-like [2Fe-2S]-binding domain A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 292 1.2E-51 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 PIRSF PIRSF037149 1 834 0.0 T 25-04-2017 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 SUPERFAMILY SSF51905 2 189 6.1E-39 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 25-04-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 25-04-2017 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 A4U88_RS22600 68f281a2345e2867af94ff75f3d184dd 849 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 767 1.8E-14 T 25-04-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS00835 f1d6f9e15406165d47d6b97dfd5d3384 223 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 5.3E-94 T 25-04-2017 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 A4U88_RS00835 f1d6f9e15406165d47d6b97dfd5d3384 223 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS00835 f1d6f9e15406165d47d6b97dfd5d3384 223 Pfam PF00005 ABC transporter 18 165 8.4E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS00835 f1d6f9e15406165d47d6b97dfd5d3384 223 Gene3D G3DSA:3.40.50.300 1 217 1.2E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00835 f1d6f9e15406165d47d6b97dfd5d3384 223 SMART SM00382 27 214 2.5E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00835 f1d6f9e15406165d47d6b97dfd5d3384 223 SUPERFAMILY SSF52540 1 217 2.6E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21435 d4df819cdf9b8b38947f17273e82b58b 140 Pfam PF01381 Helix-turn-helix 83 134 1.2E-7 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS21435 d4df819cdf9b8b38947f17273e82b58b 140 SMART SM00530 81 135 3.2E-7 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS21435 d4df819cdf9b8b38947f17273e82b58b 140 SUPERFAMILY SSF47413 80 137 2.28E-7 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS21435 d4df819cdf9b8b38947f17273e82b58b 140 Gene3D G3DSA:1.10.260.40 81 136 7.9E-10 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS04080 b125c8601d9cb69cd27fa166ee0bbce0 180 Pfam PF03079 ARD/ARD' family 5 165 5.2E-33 T 25-04-2017 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 A4U88_RS04080 b125c8601d9cb69cd27fa166ee0bbce0 180 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 38.901 T 25-04-2017 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.53+1.13.11.54|MetaCyc: PWY-4361|MetaCyc: PWY-5389 A4U88_RS04080 b125c8601d9cb69cd27fa166ee0bbce0 180 SUPERFAMILY SSF51182 1 179 4.45E-43 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS04080 b125c8601d9cb69cd27fa166ee0bbce0 180 Gene3D G3DSA:2.60.120.10 5 179 2.7E-59 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS01860 254192ce4b78f86b728927a30b3aac7b 86 Gene3D G3DSA:1.10.260.40 3 72 5.5E-41 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS01860 254192ce4b78f86b728927a30b3aac7b 86 SUPERFAMILY SSF47413 2 72 3.75E-31 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS01860 254192ce4b78f86b728927a30b3aac7b 86 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 80 9.2E-38 T 25-04-2017 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 SUPERFAMILY SSF52499 1 208 3.79E-65 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 Pfam PF00857 Isochorismatase family 32 204 9.6E-39 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PIRSF PIRSF001111 1 286 2.4E-135 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 Gene3D G3DSA:1.10.1200.10 237 284 4.7E-6 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 Gene3D G3DSA:3.40.50.850 1 236 5.6E-76 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PRINTS PR01398 Isochorismatase signature 63 80 9.3E-52 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PRINTS PR01398 Isochorismatase signature 2 14 9.3E-52 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PRINTS PR01398 Isochorismatase signature 112 134 9.3E-52 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PRINTS PR01398 Isochorismatase signature 168 186 9.3E-52 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PRINTS PR01398 Isochorismatase signature 80 99 9.3E-52 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 PRINTS PR01398 Isochorismatase signature 186 203 9.3E-52 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 SUPERFAMILY SSF47336 216 283 1.27E-8 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01390 fc6942441fbf71e40fae669b8bb9fe84 286 Pfam PF00550 Phosphopantetheine attachment site 217 277 9.4E-6 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 SUPERFAMILY SSF55174 1 85 1.91E-12 T 25-04-2017 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 SUPERFAMILY SSF55120 61 227 1.46E-47 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 SMART SM00363 1 60 7.2E-9 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 Pfam PF01479 S4 domain 1 47 1.6E-8 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 Gene3D G3DSA:3.10.290.10 1 64 3.3E-22 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 224 2.6E-56 T 25-04-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 25-04-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS16450 138acfbb3e53b5e9c48be5d6bd5f33d8 237 Pfam PF00849 RNA pseudouridylate synthase 62 192 5.7E-19 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 Gene3D G3DSA:3.40.710.10 44 125 3.1E-8 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 29 479 2.9E-118 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 SUPERFAMILY SSF56601 28 480 1.61E-93 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 Gene3D G3DSA:3.40.710.10 238 481 9.6E-66 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 57 459 3.6E-101 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 297 319 4.2E-26 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 369 383 4.2E-26 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 436 449 4.2E-26 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 354 368 4.2E-26 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05280 78c0ee0cc992b46af4b3a7c97fac804e 488 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 69 88 4.2E-26 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 95 1.7E-20 T 25-04-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 SUPERFAMILY SSF47823 11 103 4.32E-8 T 25-04-2017 IPR010998 Integrase, Lambda-type, N-terminal A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 298 55.525 T 25-04-2017 IPR023009 Tyrosine recombinase XerC/XerD A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 Gene3D G3DSA:1.10.150.130 8 104 2.3E-21 T 25-04-2017 IPR023109 Integrase/recombinase, N-terminal A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 Gene3D G3DSA:1.10.443.10 119 292 1.3E-52 T 25-04-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 SUPERFAMILY SSF56349 113 296 1.32E-53 T 25-04-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 14 300 1.8E-106 T 25-04-2017 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 A4U88_RS00675 54320d957b70a8954cb4a900abd3711f 303 Pfam PF00589 Phage integrase family 117 284 3.1E-51 T 25-04-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS16940 3405cff93a2c57b7fd3a636ca6138d0b 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 1.1E-35 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS16940 3405cff93a2c57b7fd3a636ca6138d0b 147 Gene3D G3DSA:3.40.930.10 2 146 5.4E-51 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS16940 3405cff93a2c57b7fd3a636ca6138d0b 147 SUPERFAMILY SSF55804 2 145 5.1E-39 T 25-04-2017 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 38.503 T 25-04-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 Gene3D G3DSA:3.60.150.10 9 352 2.5E-162 T 25-04-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 Pfam PF01264 Chorismate synthase 10 345 1.2E-144 T 25-04-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 25-04-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 PIRSF PIRSF001456 3 360 1.0E-144 T 25-04-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 25-04-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 SUPERFAMILY SSF103263 4 351 7.06E-150 T 25-04-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 3.3E-141 T 25-04-2017 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS17190 0aa92c798a8c7d217dfd4db8d99c4fa9 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 25-04-2017 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 A4U88_RS00900 c726cfd3387f5acf2e9525ab7f76c460 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 293 1.9E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00900 c726cfd3387f5acf2e9525ab7f76c460 295 Gene3D G3DSA:1.10.3720.10 61 291 2.2E-53 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00900 c726cfd3387f5acf2e9525ab7f76c460 295 SUPERFAMILY SSF161098 56 283 1.44E-52 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 SUPERFAMILY SSF52540 5 256 9.97E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 ProSitePatterns PS00211 ABC transporters family signature. 429 443 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 Gene3D G3DSA:3.40.50.300 278 530 1.2E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 Gene3D G3DSA:3.40.50.300 4 258 9.9E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 Pfam PF00005 ABC transporter 306 457 5.9E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 Pfam PF00005 ABC transporter 26 184 1.5E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 SMART SM00382 315 505 1.6E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 SMART SM00382 34 234 9.6E-16 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 SUPERFAMILY SSF52540 279 528 1.66E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16435 bd64ecc3d79ffdd52054f56f66390b65 533 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 259 3.9E-4 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 SUPERFAMILY SSF53613 5 304 3.27E-85 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 7 301 2.6E-112 T 25-04-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 Gene3D G3DSA:3.40.1190.20 5 306 8.3E-99 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 Hamap MF_01987 Ribokinase [rbsK]. 4 303 26.236 T 25-04-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 Pfam PF00294 pfkB family carbohydrate kinase 5 296 6.1E-77 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 PRINTS PR00990 Ribokinase signature 175 190 2.0E-36 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 PRINTS PR00990 Ribokinase signature 8 29 2.0E-36 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 PRINTS PR00990 Ribokinase signature 219 230 2.0E-36 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 PRINTS PR00990 Ribokinase signature 107 120 2.0E-36 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS24030 384d2d9c4c49f647021c1833547bcd04 308 PRINTS PR00990 Ribokinase signature 35 54 2.0E-36 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS04895 f9397b289c935665f5889e45ebcfac57 163 SUPERFAMILY SSF89963 91 163 1.44E-30 T 25-04-2017 IPR007551 Protein of unknown function DUF520 A4U88_RS04895 f9397b289c935665f5889e45ebcfac57 163 Gene3D G3DSA:3.30.70.860 98 163 2.0E-36 T 25-04-2017 A4U88_RS04895 f9397b289c935665f5889e45ebcfac57 163 SUPERFAMILY SSF89963 2 89 7.19E-31 T 25-04-2017 IPR007551 Protein of unknown function DUF520 A4U88_RS04895 f9397b289c935665f5889e45ebcfac57 163 Gene3D G3DSA:3.30.70.990 9 97 3.2E-35 T 25-04-2017 A4U88_RS04895 f9397b289c935665f5889e45ebcfac57 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 8.4E-67 T 25-04-2017 IPR007551 Protein of unknown function DUF520 A4U88_RS04895 f9397b289c935665f5889e45ebcfac57 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 29.772 T 25-04-2017 IPR007551 Protein of unknown function DUF520 A4U88_RS02900 7794f3c7eeebc257ee704d514d0b4f5d 447 Pfam PF07804 HipA-like C-terminal domain 328 438 8.2E-9 T 25-04-2017 IPR012893 HipA-like, C-terminal A4U88_RS02900 7794f3c7eeebc257ee704d514d0b4f5d 447 Pfam PF07805 HipA-like N-terminal domain 203 284 2.9E-10 T 25-04-2017 IPR012894 HipA, N-terminal subdomain 2 A4U88_RS02900 7794f3c7eeebc257ee704d514d0b4f5d 447 SUPERFAMILY SSF46785 7 76 1.39E-7 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02900 7794f3c7eeebc257ee704d514d0b4f5d 447 Gene3D G3DSA:1.10.10.10 6 50 2.2E-7 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15020 4e3eb4e393a566d52ffbe77d1ef05faa 828 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 128 497 1.2E-143 T 25-04-2017 IPR008766 Replication gene A protein GO:0006260 A4U88_RS09430 9e31c25f08a733996ed0675e7c871c4a 172 Gene3D G3DSA:1.20.1260.10 1 161 5.0E-61 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS09430 9e31c25f08a733996ed0675e7c871c4a 172 SUPERFAMILY SSF47240 1 160 5.16E-57 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS09430 9e31c25f08a733996ed0675e7c871c4a 172 Pfam PF00210 Ferritin-like domain 8 143 1.7E-39 T 25-04-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF51905 4 259 2.14E-75 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF51905 359 441 2.14E-75 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:3.50.50.60 351 425 1.4E-118 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:3.50.50.60 6 242 1.4E-118 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 5.6E-35 T 25-04-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF46977 452 588 9.81E-46 T 25-04-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:3.90.700.10 243 349 1.5E-40 T 25-04-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 SUPERFAMILY SSF56425 236 356 4.64E-42 T 25-04-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 PIRSF PIRSF000171 1 579 2.1E-47 T 25-04-2017 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Pfam PF00890 FAD binding domain 9 405 3.9E-118 T 25-04-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:4.10.80.40 548 588 9.1E-21 T 25-04-2017 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 2.9E-276 T 25-04-2017 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 Gene3D G3DSA:1.20.58.100 433 547 2.3E-37 T 25-04-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 1.6E-242 T 25-04-2017 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 3.9E-5 T 25-04-2017 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 3.9E-5 T 25-04-2017 A4U88_RS05960 de4a817479a70f2410557ac0b1cbf82f 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 25-04-2017 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.439 T 25-04-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.6E-45 T 25-04-2017 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.1E-24 T 25-04-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.1E-24 T 25-04-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.1E-24 T 25-04-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 25-04-2017 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 PIRSF PIRSF002144 1 92 3.6E-31 T 25-04-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 Gene3D G3DSA:3.30.860.10 1 91 2.5E-40 T 25-04-2017 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 SUPERFAMILY SSF54570 3 84 6.02E-35 T 25-04-2017 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22325 3cba96a2416f781cc6a27b130af8c072 92 Pfam PF00203 Ribosomal protein S19 3 83 6.0E-36 T 25-04-2017 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PIRSF PIRSF001415 2 336 4.4E-152 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 SMART SM01004 9 333 1.8E-239 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 25-04-2017 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 SUPERFAMILY SSF51569 7 335 3.37E-143 T 25-04-2017 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 Gene3D G3DSA:3.20.20.70 9 335 1.6E-151 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 1.8E-139 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 9.7E-57 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 9.7E-57 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 9.7E-57 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 9.7E-57 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 9.7E-57 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS01010 2d957ca662198453c436b94cb2cac411 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 9.7E-57 T 25-04-2017 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 SUPERFAMILY SSF100920 384 535 7.19E-50 T 25-04-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 SUPERFAMILY SSF53067 200 377 3.1E-50 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:1.20.1270.10 529 615 1.7E-30 T 25-04-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:3.30.420.40 22 69 1.7E-54 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:3.30.420.40 133 205 1.7E-54 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:3.30.30.30 70 117 5.4E-10 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 329 345 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 360 380 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 466 482 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 48 60 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 70 78 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 PRINTS PR00301 70kDa heat shock protein signature 385 404 3.9E-57 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:3.30.420.40 206 238 3.1E-31 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:3.30.420.40 314 356 3.1E-31 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 SUPERFAMILY SSF100934 504 615 1.67E-35 T 25-04-2017 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:3.90.640.10 239 310 3.1E-9 T 25-04-2017 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Pfam PF00012 Hsp70 protein 22 599 1.0E-197 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Gene3D G3DSA:2.60.34.10 387 528 6.5E-53 T 25-04-2017 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 1.6E-271 T 25-04-2017 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.734 T 25-04-2017 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 A4U88_RS18430 104871b3092811af0cdf6f15bde83d97 616 SUPERFAMILY SSF53067 20 196 1.11E-51 T 25-04-2017 A4U88_RS07260 106ac9c8d404dced5f50612d88ff91c4 456 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 6 453 1.8E-107 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS07260 106ac9c8d404dced5f50612d88ff91c4 456 PIRSF PIRSF002746 1 456 1.5E-149 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS07260 106ac9c8d404dced5f50612d88ff91c4 456 Pfam PF02447 GntP family permease 6 453 2.2E-147 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS21320 5f63371c6cd0ca7dcf9a516f00f2b74c 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 375 53.687 T 25-04-2017 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 A4U88_RS21320 5f63371c6cd0ca7dcf9a516f00f2b74c 375 Pfam PF03969 AFG1-like ATPase 5 370 6.0E-149 T 25-04-2017 IPR005654 ATPase, AFG1-like GO:0005524 A4U88_RS21320 5f63371c6cd0ca7dcf9a516f00f2b74c 375 SUPERFAMILY SSF52540 70 201 4.48E-13 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21320 5f63371c6cd0ca7dcf9a516f00f2b74c 375 Gene3D G3DSA:3.40.50.300 3 185 1.0E-23 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03480 f8cb7012721a9f32575030fa93d68010 114 SUPERFAMILY SSF89360 8 103 9.02E-31 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS03480 f8cb7012721a9f32575030fa93d68010 114 Gene3D G3DSA:2.60.300.12 9 103 5.7E-32 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS03480 f8cb7012721a9f32575030fa93d68010 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 25-04-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site A4U88_RS03480 f8cb7012721a9f32575030fa93d68010 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 36.771 T 25-04-2017 IPR023063 FeS cluster insertion protein ErpA GO:0016226 A4U88_RS03480 f8cb7012721a9f32575030fa93d68010 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 4.4E-20 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS03480 f8cb7012721a9f32575030fa93d68010 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 1.1E-38 T 25-04-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 Pfam PF01578 Cytochrome C assembly protein 14 184 2.6E-33 T 25-04-2017 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 2.8E-64 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 2.8E-64 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 2.8E-64 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 2.8E-64 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 2.8E-64 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 2.8E-64 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17265 f47916f186c7851f80c98dc523e1118f 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 4.0E-85 T 25-04-2017 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS05540 80119ad6ba59ff3db9188977673f6411 306 SMART SM00062 60 291 5.2E-23 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS05540 80119ad6ba59ff3db9188977673f6411 306 Gene3D G3DSA:3.40.190.10 61 137 1.2E-22 T 25-04-2017 A4U88_RS05540 80119ad6ba59ff3db9188977673f6411 306 Gene3D G3DSA:3.40.190.10 251 289 1.2E-22 T 25-04-2017 A4U88_RS05540 80119ad6ba59ff3db9188977673f6411 306 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 62 288 7.5E-37 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS05540 80119ad6ba59ff3db9188977673f6411 306 Gene3D G3DSA:3.40.190.10 138 247 3.6E-25 T 25-04-2017 A4U88_RS05540 80119ad6ba59ff3db9188977673f6411 306 SUPERFAMILY SSF53850 4 288 1.32E-41 T 25-04-2017 A4U88_RS06945 634b770a549a3f2b73ab0652ce766f2a 207 SUPERFAMILY SSF52833 1 85 6.87E-22 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS06945 634b770a549a3f2b73ab0652ce766f2a 207 Gene3D G3DSA:1.20.1050.10 93 201 2.1E-30 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS06945 634b770a549a3f2b73ab0652ce766f2a 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 77 9.8E-15 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS06945 634b770a549a3f2b73ab0652ce766f2a 207 SUPERFAMILY SSF47616 80 200 4.32E-26 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS06945 634b770a549a3f2b73ab0652ce766f2a 207 Gene3D G3DSA:3.40.30.10 1 92 1.8E-23 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS06945 634b770a549a3f2b73ab0652ce766f2a 207 Pfam PF13410 Glutathione S-transferase, C-terminal domain 126 188 6.5E-7 T 25-04-2017 A4U88_RS15720 a6a2c183d89cbeaf35f24da4e921d545 211 Gene3D G3DSA:3.40.50.360 7 191 3.3E-27 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS15720 a6a2c183d89cbeaf35f24da4e921d545 211 Pfam PF02525 Flavodoxin-like fold 8 158 5.7E-19 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS15720 a6a2c183d89cbeaf35f24da4e921d545 211 SUPERFAMILY SSF52218 8 206 4.98E-29 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Pfam PF00571 CBS domain 344 388 8.5E-6 T 25-04-2017 IPR000644 CBS domain A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Pfam PF00571 CBS domain 400 449 2.0E-5 T 25-04-2017 IPR000644 CBS domain A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 301 6.8E-66 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Gene3D G3DSA:3.10.580.10 344 449 4.9E-19 T 25-04-2017 A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Gene3D G3DSA:3.40.50.1100 2 41 3.0E-62 T 25-04-2017 A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Gene3D G3DSA:3.40.50.1100 152 318 3.0E-62 T 25-04-2017 A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 25-04-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 SUPERFAMILY SSF54631 344 452 2.4E-19 T 25-04-2017 A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 SUPERFAMILY SSF53686 4 320 2.23E-96 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 Gene3D G3DSA:3.40.50.1100 42 146 1.8E-37 T 25-04-2017 A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 SMART SM00116 342 389 0.0039 T 25-04-2017 IPR000644 CBS domain A4U88_RS07915 2b398e5ee853d5ef95f798ca871de9e2 455 SMART SM00116 406 451 100.0 T 25-04-2017 IPR000644 CBS domain A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 Pfam PF01497 Periplasmic binding protein 43 274 2.6E-37 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 Gene3D G3DSA:3.40.50.1980 40 126 2.4E-29 T 25-04-2017 A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 SUPERFAMILY SSF53807 39 296 2.55E-54 T 25-04-2017 A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 214 232 1.5E-38 T 25-04-2017 IPR008091 Ferrichrome-binding periplasmic protein A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 60 78 1.5E-38 T 25-04-2017 IPR008091 Ferrichrome-binding periplasmic protein A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 190 205 1.5E-38 T 25-04-2017 IPR008091 Ferrichrome-binding periplasmic protein A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 242 259 1.5E-38 T 25-04-2017 IPR008091 Ferrichrome-binding periplasmic protein A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 279 292 1.5E-38 T 25-04-2017 IPR008091 Ferrichrome-binding periplasmic protein A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 91 106 1.5E-38 T 25-04-2017 IPR008091 Ferrichrome-binding periplasmic protein A4U88_RS20330 c1a1d6cd08a6d542f246899b101382f6 302 Gene3D G3DSA:3.40.50.1980 134 297 1.8E-53 T 25-04-2017 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 PIRSF PIRSF001434 1 384 1.3E-135 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 190 204 - T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 380 6.1E-142 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 3 382 2.4E-206 T 25-04-2017 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 Gene3D G3DSA:3.40.640.10 4 246 3.6E-90 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 Gene3D G3DSA:3.90.1150.10 248 383 2.8E-50 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS23515 bb2c8abc08daf0d485c8f6586ccc6faf 386 SUPERFAMILY SSF53383 9 381 1.35E-120 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS22415 5a933c98c3edfed89d28b3f7f2081999 390 Pfam PF00155 Aminotransferase class I and II 40 385 2.1E-41 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS22415 5a933c98c3edfed89d28b3f7f2081999 390 SUPERFAMILY SSF53383 1 389 3.99E-99 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS22415 5a933c98c3edfed89d28b3f7f2081999 390 Gene3D G3DSA:3.90.1150.10 255 389 6.3E-39 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS22415 5a933c98c3edfed89d28b3f7f2081999 390 Gene3D G3DSA:3.40.640.10 46 254 6.4E-53 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS22415 5a933c98c3edfed89d28b3f7f2081999 390 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 387 1.9E-126 T 25-04-2017 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 SUPERFAMILY SSF51604 98 388 8.65E-79 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 85 110 - T 25-04-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 SMART SM00922 128 259 1.8E-15 T 25-04-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 13 110 4.1E-34 T 25-04-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 Gene3D G3DSA:3.20.20.120 120 367 1.3E-87 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 Gene3D G3DSA:3.30.390.10 1 119 2.0E-51 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 Pfam PF13378 Enolase C-terminal domain-like 138 379 1.4E-42 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS18140 6710e2b122136fadb66956944ea6b3bd 404 SUPERFAMILY SSF54826 1 112 1.7E-33 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 PIRSF PIRSF004749 1 168 1.6E-54 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 PRINTS PR01576 Peptide deformylase signature 101 119 4.3E-37 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 PRINTS PR01576 Peptide deformylase signature 89 100 4.3E-37 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 PRINTS PR01576 Peptide deformylase signature 120 149 4.3E-37 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 PRINTS PR01576 Peptide deformylase signature 33 62 4.3E-37 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 SUPERFAMILY SSF56420 3 164 1.44E-60 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 Gene3D G3DSA:3.90.45.10 5 166 1.1E-62 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 Pfam PF01327 Polypeptide deformylase 4 152 2.7E-49 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.1E-64 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS22170 1c86827800988fcc44a9cf20250c7630 169 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.172 T 25-04-2017 IPR023635 Peptide deformylase A4U88_RS17765 385609163cc21978edc55703e7101f96 320 Pfam PF04198 Putative sugar-binding domain 63 317 3.1E-78 T 25-04-2017 IPR007324 Sugar-binding domain, putative GO:0030246 A4U88_RS17765 385609163cc21978edc55703e7101f96 320 SUPERFAMILY SSF100950 67 317 1.26E-67 T 25-04-2017 A4U88_RS17765 385609163cc21978edc55703e7101f96 320 Gene3D G3DSA:3.40.50.1360 67 318 3.4E-75 T 25-04-2017 A4U88_RS17765 385609163cc21978edc55703e7101f96 320 Pfam PF13412 Winged helix-turn-helix DNA-binding 23 55 3.0E-5 T 25-04-2017 A4U88_RS17765 385609163cc21978edc55703e7101f96 320 Gene3D G3DSA:1.10.10.10 24 60 5.0E-7 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20515 90b2c8949cb17a5b86bbcef3ee12aea3 194 SUPERFAMILY SSF53448 1 190 7.35E-20 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS20515 90b2c8949cb17a5b86bbcef3ee12aea3 194 Gene3D G3DSA:3.90.550.10 2 190 5.0E-22 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS20515 90b2c8949cb17a5b86bbcef3ee12aea3 194 Pfam PF12804 MobA-like NTP transferase domain 6 166 8.5E-25 T 25-04-2017 IPR025877 MobA-like NTP transferase A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 Gene3D G3DSA:3.40.50.300 3 235 9.8E-78 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 SMART SM00382 29 212 2.9E-18 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 Pfam PF08402 TOBE domain 257 336 1.2E-14 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 Pfam PF00005 ABC transporter 21 162 8.5E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 SUPERFAMILY SSF50331 249 336 5.5E-9 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS18525 b321664d1c4563e3a251ca3bd73fa2f3 342 SUPERFAMILY SSF52540 5 243 2.6E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14080 d9ff1288af707489f9f421fd23257ba0 247 SUPERFAMILY SSF53448 3 222 6.14E-54 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS14080 d9ff1288af707489f9f421fd23257ba0 247 Gene3D G3DSA:3.90.550.10 3 229 3.0E-51 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS14080 d9ff1288af707489f9f421fd23257ba0 247 Pfam PF00535 Glycosyl transferase family 2 5 143 8.6E-34 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS14455 aae3a1021c8c0d436731ce2e836110d4 134 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 25-04-2017 IPR019776 Flagellar basal body rod protein, conserved site A4U88_RS14455 aae3a1021c8c0d436731ce2e836110d4 134 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 87 132 2.3E-12 T 25-04-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain A4U88_RS14455 aae3a1021c8c0d436731ce2e836110d4 134 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 134 3.5E-52 T 25-04-2017 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 A4U88_RS14455 aae3a1021c8c0d436731ce2e836110d4 134 Pfam PF00460 Flagella basal body rod protein 7 37 1.3E-8 T 25-04-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 A4U88_RS07990 4e7f218ff1a1661b210662445f601d6b 432 Pfam PF03222 Tryptophan/tyrosine permease family 32 396 2.8E-11 T 25-04-2017 IPR018227 Tryptophan/tyrosine permease GO:0003333 A4U88_RS07990 4e7f218ff1a1661b210662445f601d6b 432 TIGRFAM TIGR00814 stp: serine transporter 20 421 5.4E-180 T 25-04-2017 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 A4U88_RS21200 1ccffac48ad06fa65fb2bded64e1f153 95 Pfam PF13997 YqjK-like protein 14 86 1.6E-31 T 25-04-2017 IPR025612 YqjK-like protein A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 SUPERFAMILY SSF52402 13 231 8.16E-64 T 25-04-2017 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 Gene3D G3DSA:3.40.50.620 14 177 2.5E-11 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 Pfam PF01171 PP-loop family 20 196 4.4E-55 T 25-04-2017 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 7 305 23.631 T 25-04-2017 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 19 201 5.8E-50 T 25-04-2017 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 SMART SM00977 361 434 1.1E-25 T 25-04-2017 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 Pfam PF11734 TilS substrate C-terminal domain 361 434 1.5E-27 T 25-04-2017 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 Pfam PF09179 TilS substrate binding domain 246 313 4.0E-19 T 25-04-2017 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 374 406 5.3E-14 T 25-04-2017 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 SUPERFAMILY SSF56037 322 436 4.45E-31 T 25-04-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 A4U88_RS19160 c69a21f4ef4f3fed2fd6ea9666ff8363 443 SUPERFAMILY SSF82829 232 317 7.85E-25 T 25-04-2017 A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 Gene3D G3DSA:1.10.40.30 390 445 6.3E-34 T 25-04-2017 A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 SUPERFAMILY SSF48557 10 454 1.07E-106 T 25-04-2017 IPR008948 L-Aspartase-like GO:0003824 A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 25-04-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 Pfam PF00206 Lyase 14 312 7.6E-78 T 25-04-2017 IPR022761 Fumarate lyase, N-terminal A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 Gene3D G3DSA:1.10.275.10 1 119 2.2E-50 T 25-04-2017 IPR024083 Fumarase/histidase, N-terminal A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 2.8E-52 T 25-04-2017 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 Gene3D G3DSA:1.20.200.10 120 389 1.3E-88 T 25-04-2017 A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 4.7E-17 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 4.7E-17 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 4.7E-17 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 4.7E-17 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS09890 c9c1b48a56eb89d9794dd65fe05e53aa 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 1.0E-152 T 25-04-2017 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 SMART SM00422 13 81 1.7E-18 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 SUPERFAMILY SSF46955 13 135 4.4E-26 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 Gene3D G3DSA:1.10.1660.10 10 68 2.9E-19 T 25-04-2017 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 Pfam PF09278 MerR, DNA binding 56 120 2.9E-14 T 25-04-2017 IPR015358 Transcription regulator MerR, DNA binding A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 Pfam PF00376 MerR family regulatory protein 14 50 1.1E-12 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 25 38 2.1E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 48 68 2.1E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 25 2.1E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 Gene3D G3DSA:1.10.1660.10 69 141 4.0E-13 T 25-04-2017 A4U88_RS08685 261cdc2720df32e109d858d1f15524c3 156 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 13 152 1.1E-62 T 25-04-2017 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 311 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 23 413 2.6E-141 T 25-04-2017 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 92 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 SUPERFAMILY SSF103473 16 423 3.27E-65 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 Pfam PF07690 Major Facilitator Superfamily 22 373 4.0E-28 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 Gene3D G3DSA:1.20.1250.20 235 420 1.0E-21 T 25-04-2017 A4U88_RS16040 acc5864e129001c6f511c70942f16e8a 431 Gene3D G3DSA:1.20.1250.20 17 217 1.0E-25 T 25-04-2017 A4U88_RS16600 0c146275aadca61877afbc42ebfba7c7 225 SUPERFAMILY SSF51306 119 223 1.08E-8 T 25-04-2017 IPR015927 Peptidase S24/S26A/S26B/S26C A4U88_RS16600 0c146275aadca61877afbc42ebfba7c7 225 Gene3D G3DSA:2.10.109.10 129 223 2.5E-12 T 25-04-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain A4U88_RS16600 0c146275aadca61877afbc42ebfba7c7 225 Gene3D G3DSA:1.10.260.40 28 96 6.0E-7 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16600 0c146275aadca61877afbc42ebfba7c7 225 SUPERFAMILY SSF47413 28 81 3.13E-5 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 SMART SM00345 14 73 2.6E-17 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 73 1.1E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 Pfam PF00155 Aminotransferase class I and II 152 421 1.2E-18 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 SUPERFAMILY SSF46785 11 85 1.62E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 Gene3D G3DSA:1.10.10.10 12 78 5.5E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 Gene3D G3DSA:3.90.1150.10 297 428 7.8E-10 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 SUPERFAMILY SSF53383 87 428 1.37E-50 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS12405 f669cf7145897b0542c4cf2f2a979306 434 Gene3D G3DSA:3.40.640.10 150 296 2.2E-18 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS02570 bf10ded64d8fa731fca7fbb0315c7c1b 369 Pfam PF03576 Peptidase family S58 21 346 2.0E-106 T 25-04-2017 IPR005321 Peptidase S58, DmpA A4U88_RS02570 bf10ded64d8fa731fca7fbb0315c7c1b 369 Gene3D G3DSA:3.60.70.12 3 367 1.4E-125 T 25-04-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS02570 bf10ded64d8fa731fca7fbb0315c7c1b 369 SUPERFAMILY SSF56266 4 366 3.79E-108 T 25-04-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 SUPERFAMILY SSF55729 31 118 4.51E-11 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 Pfam PF08218 Citrate lyase ligase C-terminal domain 147 333 1.1E-76 T 25-04-2017 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 7 339 4.0E-148 T 25-04-2017 IPR005216 Citrate lyase ligase GO:0008771 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 147 205 4.5E-9 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 113 336 2.0E-93 T 25-04-2017 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 SMART SM00764 147 333 8.5E-122 T 25-04-2017 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 PIRSF PIRSF005751 1 348 5.6E-128 T 25-04-2017 IPR005216 Citrate lyase ligase GO:0008771 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 Gene3D G3DSA:3.40.50.620 129 335 5.1E-34 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 SUPERFAMILY SSF52374 146 266 8.44E-23 T 25-04-2017 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 SUPERFAMILY SSF52374 303 335 8.44E-23 T 25-04-2017 A4U88_RS15865 e7c569e0bf130c6806cd95a97358cad4 356 Gene3D G3DSA:3.40.630.30 20 115 3.5E-8 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 Gene3D G3DSA:3.10.170.10 54 174 2.2E-46 T 25-04-2017 IPR013856 Peptidase M4 domain GO:0004222 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 Gene3D G3DSA:1.10.390.10 175 340 4.3E-52 T 25-04-2017 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 Pfam PF02868 Thermolysin metallopeptidase, alpha-helical domain 173 340 4.4E-51 T 25-04-2017 IPR001570 Peptidase M4, C-terminal GO:0004222 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 SUPERFAMILY SSF55486 62 340 3.66E-87 T 25-04-2017 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 Pfam PF01447 Thermolysin metallopeptidase, catalytic domain 62 170 2.4E-31 T 25-04-2017 IPR013856 Peptidase M4 domain GO:0004222 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 Pfam PF16485 Protealysin propeptide 7 46 1.4E-18 T 25-04-2017 IPR032475 Protealysin, N-terminal propeptide A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 125 145 4.6E-29 T 25-04-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 161 177 4.6E-29 T 25-04-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 182 193 4.6E-29 T 25-04-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 A4U88_RS18345 a60bd7fdc0ea9e967b50f970d7d00595 341 PRINTS PR00730 Thermolysin metalloprotease (M4) family signature 263 279 4.6E-29 T 25-04-2017 IPR023612 Peptidase M4 GO:0004222|GO:0006508 A4U88_RS13470 aaa1fbc2ec1a9a34ca0b6ba7acfafe86 340 SUPERFAMILY SSF53955 33 338 1.65E-92 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS13470 aaa1fbc2ec1a9a34ca0b6ba7acfafe86 340 Gene3D G3DSA:1.10.530.10 224 339 2.7E-52 T 25-04-2017 A4U88_RS13470 aaa1fbc2ec1a9a34ca0b6ba7acfafe86 340 Gene3D G3DSA:1.10.530.10 88 143 2.7E-52 T 25-04-2017 A4U88_RS13470 aaa1fbc2ec1a9a34ca0b6ba7acfafe86 340 Pfam PF13406 Transglycosylase SLT domain 43 336 1.0E-103 T 25-04-2017 IPR031304 Transglycosylase SLT domain 2 A4U88_RS13470 aaa1fbc2ec1a9a34ca0b6ba7acfafe86 340 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 42 339 9.8E-114 T 25-04-2017 IPR011970 Lytic murein transglycosylase A4U88_RS23275 d8587186b2fc40e55f5e3cce58cea224 288 Pfam PF00378 Enoyl-CoA hydratase/isomerase 43 208 2.6E-17 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS23275 d8587186b2fc40e55f5e3cce58cea224 288 Gene3D G3DSA:3.90.226.10 28 221 3.7E-31 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS23275 d8587186b2fc40e55f5e3cce58cea224 288 SUPERFAMILY SSF52096 25 266 5.41E-33 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Gene3D G3DSA:1.10.8.210 149 208 2.0E-23 T 25-04-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 PIRSF PIRSF036426 1 469 1.6E-203 T 25-04-2017 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Pfam PF10414 Sirohaem synthase dimerisation region 150 207 1.3E-22 T 25-04-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 5.3E-8 T 25-04-2017 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 219 452 3.2E-91 T 25-04-2017 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Gene3D G3DSA:3.40.50.720 2 112 2.3E-37 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 221 430 1.2E-49 T 25-04-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Gene3D G3DSA:3.40.1010.10 218 334 5.3E-46 T 25-04-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Gene3D G3DSA:3.30.160.110 113 148 3.3E-19 T 25-04-2017 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 SUPERFAMILY SSF53790 218 460 9.95E-80 T 25-04-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 224 238 - T 25-04-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 299 332 - T 25-04-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Hamap MF_01646 Siroheme synthase [cysG]. 1 461 52.435 T 25-04-2017 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Pfam PF13241 Putative NAD(P)-binding 6 115 1.5E-27 T 25-04-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 SUPERFAMILY SSF75615 114 205 7.06E-28 T 25-04-2017 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 SUPERFAMILY SSF51735 2 113 3.03E-24 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 3.2E-81 T 25-04-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS03605 e69f80a56f38a983489c7de52596d47b 476 Gene3D G3DSA:3.30.950.10 335 463 1.6E-47 T 25-04-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 357 376 0.0026 T 25-04-2017 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 385 415 0.0071 T 25-04-2017 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 302 321 0.048 T 25-04-2017 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 424 454 0.0019 T 25-04-2017 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 279 302 0.037 T 25-04-2017 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 Gene3D G3DSA:2.160.20.10 42 327 6.2E-79 T 25-04-2017 IPR012334 Pectin lyase fold A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 SUPERFAMILY SSF51126 43 317 4.39E-55 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 SMART SM00912 49 169 1.2E-36 T 25-04-2017 IPR008638 Filamentous haemagglutinin, N-terminal A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 67 164 2.6E-20 T 25-04-2017 IPR008638 Filamentous haemagglutinin, N-terminal A4U88_RS04870 427c61b7ee2be66190734418922c8aef 537 Pfam PF05860 haemagglutination activity domain 38 168 1.2E-29 T 25-04-2017 IPR008638 Filamentous haemagglutinin, N-terminal A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 SUPERFAMILY SSF52540 3 269 2.16E-122 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 Gene3D G3DSA:3.40.50.880 289 541 8.5E-99 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 2.5E-64 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 SUPERFAMILY SSF52317 289 541 1.18E-87 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 Pfam PF06418 CTP synthase N-terminus 5 266 3.4E-126 T 25-04-2017 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 1.4E-265 T 25-04-2017 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 Gene3D G3DSA:3.40.50.300 1 280 2.8E-134 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03530 6a289bc6a95a0af5c0e6b359279e2c6b 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.291 T 25-04-2017 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 Gene3D G3DSA:3.40.190.10 88 184 7.5E-12 T 25-04-2017 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 SUPERFAMILY SSF46785 1 87 3.49E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 Gene3D G3DSA:1.10.10.10 1 85 1.5E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 Pfam PF03466 LysR substrate binding domain 87 296 1.0E-27 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 SUPERFAMILY SSF53850 88 299 1.67E-27 T 25-04-2017 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 Gene3D G3DSA:3.40.190.10 185 263 6.1E-10 T 25-04-2017 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12780 5afde44996d7f3d8cf34bd9878c63ee9 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.3E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 2.7E-104 T 25-04-2017 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 Gene3D G3DSA:1.10.8.60 143 222 3.9E-38 T 25-04-2017 A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 SUPERFAMILY SSF52540 1 210 3.04E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 SUPERFAMILY SSF48019 212 335 3.06E-37 T 25-04-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 Gene3D G3DSA:1.20.272.20 223 340 8.9E-54 T 25-04-2017 A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 Gene3D G3DSA:3.40.50.300 1 140 1.3E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 337 2.0E-65 T 25-04-2017 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS05640 c0b05cfaee8191f8704fdda0d8c11c66 344 Pfam PF06144 DNA polymerase III, delta subunit 21 190 1.3E-41 T 25-04-2017 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 A4U88_RS07780 5bf331bccefadd75cf32869729f3c055 264 Pfam PF01061 ABC-2 type transporter 15 224 8.3E-27 T 25-04-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 A4U88_RS07780 5bf331bccefadd75cf32869729f3c055 264 PRINTS PR00164 ABC-2 type transport system membrane protein signature 182 201 7.5E-6 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS07780 5bf331bccefadd75cf32869729f3c055 264 PRINTS PR00164 ABC-2 type transport system membrane protein signature 34 55 7.5E-6 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS07780 5bf331bccefadd75cf32869729f3c055 264 PRINTS PR00164 ABC-2 type transport system membrane protein signature 145 169 7.5E-6 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS10250 bac2e72a5fd600d7c54b741eb833b444 254 Gene3D G3DSA:2.60.40.1070 173 244 6.0E-4 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS10250 bac2e72a5fd600d7c54b741eb833b444 254 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 153 2.2E-18 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS10250 bac2e72a5fd600d7c54b741eb833b444 254 SUPERFAMILY SSF49354 22 154 6.02E-25 T 25-04-2017 IPR008962 PapD-like A4U88_RS10250 bac2e72a5fd600d7c54b741eb833b444 254 Gene3D G3DSA:2.60.40.360 27 154 2.7E-18 T 25-04-2017 IPR008962 PapD-like A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 Gene3D G3DSA:2.20.25.90 37 108 8.3E-25 T 25-04-2017 A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 Gene3D G3DSA:3.40.50.740 109 172 8.5E-16 T 25-04-2017 A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 Pfam PF00384 Molybdopterin oxidoreductase 107 139 3.7E-6 T 25-04-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 25-04-2017 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 103 1.6E-19 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 SUPERFAMILY SSF53706 35 195 1.57E-56 T 25-04-2017 A4U88_RS00195 8ef3e8f6a712b269aa9be5f3cffb2687 195 SMART SM00926 43 104 4.9E-21 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS00565 8f61e679101f8ee8dd85d365c2445700 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 1.5E-98 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00565 8f61e679101f8ee8dd85d365c2445700 355 SUPERFAMILY SSF51735 2 339 2.19E-95 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00565 8f61e679101f8ee8dd85d365c2445700 355 Gene3D G3DSA:3.90.25.10 193 341 2.2E-55 T 25-04-2017 A4U88_RS00565 8f61e679101f8ee8dd85d365c2445700 355 Gene3D G3DSA:3.40.50.720 2 192 2.0E-67 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00565 8f61e679101f8ee8dd85d365c2445700 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 341 1.8E-160 T 25-04-2017 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Gene3D G3DSA:3.40.50.300 201 267 1.1E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Gene3D G3DSA:3.40.50.300 4 130 1.1E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Gene3D G3DSA:3.10.20.30 268 363 7.8E-51 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Pfam PF01926 50S ribosome-binding GTPase 5 121 2.1E-21 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 SUPERFAMILY SSF81271 279 359 1.31E-36 T 25-04-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.3E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.3E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.3E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.3E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 4.3E-40 T 25-04-2017 IPR013029 Domain of unknown function DUF933 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Gene3D G3DSA:1.10.150.300 131 200 4.7E-28 T 25-04-2017 IPR023192 TGS-like domain A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.5E-176 T 25-04-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 SUPERFAMILY SSF52540 3 301 4.15E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 PIRSF PIRSF006641 1 363 6.7E-159 T 25-04-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 A4U88_RS09670 f07088d086a006b330310cdc0445c048 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.729 T 25-04-2017 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 A4U88_RS14650 7d43492d46601f320b73a4649401479d 400 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 6 214 2.6E-69 T 25-04-2017 IPR017732 Type IV / VI secretion system, DotU A4U88_RS14650 7d43492d46601f320b73a4649401479d 400 Pfam PF09850 Type VI secretion system protein DotU 7 209 6.2E-71 T 25-04-2017 IPR017732 Type IV / VI secretion system, DotU A4U88_RS14650 7d43492d46601f320b73a4649401479d 400 TIGRFAM TIGR03350 type_VI_ompA: type VI secretion system peptidoglycan-associated domain 245 379 3.4E-47 T 25-04-2017 IPR017733 Type VI secretion system peptidoglycan-associated domain A4U88_RS14650 7d43492d46601f320b73a4649401479d 400 Pfam PF00691 OmpA family 276 374 3.2E-18 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS14650 7d43492d46601f320b73a4649401479d 400 SUPERFAMILY SSF103088 251 380 4.05E-28 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS14650 7d43492d46601f320b73a4649401479d 400 Gene3D G3DSA:3.30.1330.60 253 380 7.4E-31 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Gene3D G3DSA:3.90.55.10 455 557 3.1E-34 T 25-04-2017 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 SUPERFAMILY SSF50692 618 750 7.87E-34 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Gene3D G3DSA:3.40.228.10 146 350 1.7E-43 T 25-04-2017 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Pfam PF00384 Molybdopterin oxidoreductase 52 509 8.5E-60 T 25-04-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Gene3D G3DSA:2.40.40.20 599 750 2.7E-48 T 25-04-2017 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 SUPERFAMILY SSF53706 11 609 5.1E-152 T 25-04-2017 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Pfam PF01568 Molydopterin dinucleotide binding domain 625 745 1.5E-25 T 25-04-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Gene3D G3DSA:3.40.50.740 351 454 6.7E-41 T 25-04-2017 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 Gene3D G3DSA:3.40.50.740 46 145 6.7E-41 T 25-04-2017 A4U88_RS19505 cec70112dbbd8ff0bee6563cc6b6bdd3 752 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 453 470 - T 25-04-2017 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 SUPERFAMILY SSF50465 298 393 6.33E-36 T 25-04-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 4.9E-34 T 25-04-2017 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.7E-15 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 SUPERFAMILY SSF52540 6 219 2.58E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Gene3D G3DSA:3.40.50.300 3 208 4.3E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 SUPERFAMILY SSF50447 205 301 1.71E-30 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Gene3D G3DSA:2.40.30.10 209 298 6.4E-37 T 25-04-2017 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Gene3D G3DSA:2.40.30.10 300 393 7.6E-47 T 25-04-2017 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 2.2E-237 T 25-04-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.809 T 25-04-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.8E-17 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS22365 1c239a32f8f16e7f5f939bb9450dbeef 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 6.4E-59 T 25-04-2017 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 Gene3D G3DSA:2.60.410.10 286 377 5.9E-31 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 34 266 1.2E-96 T 25-04-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 152 165 1.1E-17 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 1.1E-17 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 142 1.1E-17 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 Gene3D G3DSA:3.40.710.10 31 285 1.9E-95 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 SUPERFAMILY SSF69189 286 379 3.73E-26 T 25-04-2017 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 SUPERFAMILY SSF56601 11 286 9.57E-81 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 286 377 1.6E-25 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS07920 249f204e8fe1148013f6819c5fce0708 401 SMART SM00936 286 377 8.5E-36 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 SUPERFAMILY SSF81333 3 77 6.93E-18 T 25-04-2017 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 Gene3D G3DSA:1.20.20.10 3 77 7.3E-31 T 25-04-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 Pfam PF00137 ATP synthase subunit C 11 69 1.6E-9 T 25-04-2017 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 25-04-2017 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 1.6E-8 T 25-04-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 1.6E-8 T 25-04-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 1.6E-8 T 25-04-2017 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 25-04-2017 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 A4U88_RS24105 7b9971ed6c88455d372e2e1c8ecf572d 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 77 14.331 T 25-04-2017 A4U88_RS18590 52501ecffcc2fd4de4518ba430fc7f7c 218 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 10 218 1.9E-120 T 25-04-2017 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668 A4U88_RS18590 52501ecffcc2fd4de4518ba430fc7f7c 218 Gene3D G3DSA:3.40.50.1000 9 36 1.4E-6 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS18590 52501ecffcc2fd4de4518ba430fc7f7c 218 Gene3D G3DSA:3.40.50.1000 111 144 1.4E-6 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS18590 52501ecffcc2fd4de4518ba430fc7f7c 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 16 199 3.2E-16 T 25-04-2017 A4U88_RS18590 52501ecffcc2fd4de4518ba430fc7f7c 218 SUPERFAMILY SSF56784 14 140 6.43E-9 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 SUPERFAMILY SSF51998 4 759 2.72E-290 T 25-04-2017 A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 25-04-2017 IPR019777 Formate C-acetyltransferase glycine radical, conserved site A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 760 0.0 T 25-04-2017 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 PIRSF PIRSF000379 8 760 0.0 T 25-04-2017 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 Pfam PF02901 Pyruvate formate lyase-like 23 614 1.7E-206 T 25-04-2017 IPR004184 Pyruvate formate lyase domain GO:0003824 A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 Gene3D G3DSA:3.20.70.20 5 759 0.0 T 25-04-2017 A4U88_RS08290 a2ff7a0fc647f8dbab1aeb4fc7456bce 760 Pfam PF01228 Glycine radical 630 741 5.7E-43 T 25-04-2017 IPR001150 Glycine radical domain GO:0003824|GO:0008152 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Pfam PF13745 HxxPF-repeated domain 383 471 1.1E-18 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 ProSitePatterns PS00455 Putative AMP-binding domain signature. 665 676 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 SUPERFAMILY SSF52777 250 489 4.0E-49 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Pfam PF00550 Phosphopantetheine attachment site 1041 1105 2.3E-10 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:3.30.300.30 918 1018 1.2E-23 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Pfam PF00975 Thioesterase domain 1127 1370 3.7E-17 T 25-04-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 SUPERFAMILY SSF53474 1120 1374 2.72E-27 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:2.30.38.10 836 914 6.0E-21 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Pfam PF00501 AMP-binding enzyme 528 923 1.9E-77 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:1.10.1200.10 1037 1108 1.5E-11 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:3.40.50.980 672 835 3.9E-39 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Pfam PF13193 AMP-binding enzyme C-terminal domain 933 1011 5.4E-7 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 548 948 3.5E-106 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:3.40.50.1820 1119 1230 1.7E-23 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:3.40.50.1820 1308 1372 1.7E-23 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 SUPERFAMILY SSF56801 515 1018 1.09E-117 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 SMART SM00823 Phosphopantetheine attachment site 1038 1109 0.0031 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Pfam PF00668 Condensation domain 76 358 7.7E-42 T 25-04-2017 IPR001242 Condensation domain A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 Gene3D G3DSA:3.40.50.980 522 671 3.8E-28 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 SUPERFAMILY SSF52777 74 227 1.56E-26 T 25-04-2017 A4U88_RS11270 d9b022221750c9b227125ea21fab4dcb 1380 SUPERFAMILY SSF47336 1040 1108 2.22E-10 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 SUPERFAMILY SSF47413 12 70 1.69E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 25-04-2017 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 Pfam PF13377 Periplasmic binding protein-like domain 181 339 5.8E-27 T 25-04-2017 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 Gene3D G3DSA:1.10.260.40 11 67 2.6E-22 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 Gene3D G3DSA:3.40.50.2300 180 339 1.1E-42 T 25-04-2017 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 SUPERFAMILY SSF53822 72 339 3.21E-51 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 SMART SM00354 12 82 5.2E-29 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 Gene3D G3DSA:3.40.50.2300 69 179 1.4E-31 T 25-04-2017 A4U88_RS16945 9535f43ba5eacd409733523d1d6a7efb 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.7E-18 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS18935 1188b397d18933ddf0a1ecdc8cededcd 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 11 323 6.3E-146 T 25-04-2017 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18935 1188b397d18933ddf0a1ecdc8cededcd 323 Pfam PF00268 Ribonucleotide reductase, small chain 13 282 3.9E-85 T 25-04-2017 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18935 1188b397d18933ddf0a1ecdc8cededcd 323 Gene3D G3DSA:1.10.620.20 10 284 1.4E-92 T 25-04-2017 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: R-HSA-499943 A4U88_RS18935 1188b397d18933ddf0a1ecdc8cededcd 323 PIRSF PIRSF000355 2 320 1.8E-79 T 25-04-2017 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18935 1188b397d18933ddf0a1ecdc8cededcd 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 101 117 - T 25-04-2017 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18935 1188b397d18933ddf0a1ecdc8cededcd 323 SUPERFAMILY SSF47240 8 323 3.54E-105 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS02455 205febe482fbaef17ba2c94b7c969e4b 456 SUPERFAMILY SSF54368 36 130 9.68E-6 T 25-04-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS02455 205febe482fbaef17ba2c94b7c969e4b 456 Gene3D G3DSA:3.30.590.10 136 447 1.2E-75 T 25-04-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 A4U88_RS02455 205febe482fbaef17ba2c94b7c969e4b 456 SMART SM01230 133 378 4.0E-77 T 25-04-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS02455 205febe482fbaef17ba2c94b7c969e4b 456 SUPERFAMILY SSF55931 133 456 3.63E-85 T 25-04-2017 A4U88_RS02455 205febe482fbaef17ba2c94b7c969e4b 456 Pfam PF00120 Glutamine synthetase, catalytic domain 134 453 2.8E-81 T 25-04-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS22610 1688537084ce35d96a9a21e759af0aa4 266 Gene3D G3DSA:1.20.1080.10 23 249 7.5E-60 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS22610 1688537084ce35d96a9a21e759af0aa4 266 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 20 250 6.6E-79 T 25-04-2017 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 A4U88_RS22610 1688537084ce35d96a9a21e759af0aa4 266 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 73 82 - T 25-04-2017 IPR024002 Formate/nitrite transporter, conserved site A4U88_RS22610 1688537084ce35d96a9a21e759af0aa4 266 Pfam PF01226 Formate/nitrite transporter 20 247 4.7E-56 T 25-04-2017 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 A4U88_RS22610 1688537084ce35d96a9a21e759af0aa4 266 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 157 167 - T 25-04-2017 IPR024002 Formate/nitrite transporter, conserved site A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 Gene3D G3DSA:2.40.50.100 1 96 4.9E-26 T 25-04-2017 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 SUPERFAMILY SSF51230 2 94 3.4E-24 T 25-04-2017 IPR011053 Single hybrid motif A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 25-04-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 Pfam PF00364 Biotin-requiring enzyme 5 77 7.3E-18 T 25-04-2017 IPR000089 Biotin/lipoyl attachment A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 Gene3D G3DSA:4.10.320.10 114 154 1.4E-19 T 25-04-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 405 1.5E-190 T 25-04-2017 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 175 403 3.4E-83 T 25-04-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 Pfam PF02817 e3 binding domain 114 147 7.1E-12 T 25-04-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 SUPERFAMILY SSF52777 175 404 6.23E-90 T 25-04-2017 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 Gene3D G3DSA:3.30.559.10 166 403 4.4E-93 T 25-04-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 A4U88_RS05975 8ba50689deb38fabd0d2aa26e347afda 405 SUPERFAMILY SSF47005 107 152 1.57E-11 T 25-04-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS08995 57b09184e154781309578b1bcc753c11 99 Pfam PF10796 Sigma-S stabilisation anti-adaptor protein 8 60 3.6E-5 T 25-04-2017 IPR019732 Sigma-S stabilisation anti-adaptor protein GO:0005737 A4U88_RS05820 a602d293767034d73b5719705a68c5a7 179 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 25-04-2017 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 A4U88_RS05820 a602d293767034d73b5719705a68c5a7 179 Pfam PF00258 Flavodoxin 6 164 1.1E-32 T 25-04-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 A4U88_RS05820 a602d293767034d73b5719705a68c5a7 179 TIGRFAM TIGR01752 flav_long: flavodoxin 4 172 3.2E-73 T 25-04-2017 IPR010086 Flavodoxin, long chain GO:0010181 A4U88_RS05820 a602d293767034d73b5719705a68c5a7 179 Gene3D G3DSA:3.40.50.360 1 172 9.6E-62 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS05820 a602d293767034d73b5719705a68c5a7 179 PIRSF PIRSF038996 1 176 1.3E-68 T 25-04-2017 IPR010086 Flavodoxin, long chain GO:0010181 A4U88_RS05820 a602d293767034d73b5719705a68c5a7 179 SUPERFAMILY SSF52218 4 173 1.4E-51 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS12030 5e159d6180fb9b42ec3eebf331162c0b 385 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 63 286 8.4E-19 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS12030 5e159d6180fb9b42ec3eebf331162c0b 385 Gene3D G3DSA:2.40.50.100 62 95 1.3E-19 T 25-04-2017 A4U88_RS12030 5e159d6180fb9b42ec3eebf331162c0b 385 Gene3D G3DSA:2.40.50.100 170 203 1.3E-19 T 25-04-2017 A4U88_RS12030 5e159d6180fb9b42ec3eebf331162c0b 385 SUPERFAMILY SSF111369 50 293 5.75E-62 T 25-04-2017 A4U88_RS12030 5e159d6180fb9b42ec3eebf331162c0b 385 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 364 4.1E-81 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS01675 20b780c71d905f05307f597e69b9c001 334 PIRSF PIRSF005651 1 334 4.6E-106 T 25-04-2017 IPR010200 HflC GO:0016021|GO:0052547 A4U88_RS01675 20b780c71d905f05307f597e69b9c001 334 Pfam PF01145 SPFH domain / Band 7 family 22 243 3.1E-34 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS01675 20b780c71d905f05307f597e69b9c001 334 SMART SM00244 18 227 5.6E-45 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS01675 20b780c71d905f05307f597e69b9c001 334 SUPERFAMILY SSF117892 56 169 1.11E-17 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS01675 20b780c71d905f05307f597e69b9c001 334 TIGRFAM TIGR01932 hflC: HflC protein 1 327 6.8E-138 T 25-04-2017 IPR010200 HflC GO:0016021|GO:0052547 A4U88_RS01675 20b780c71d905f05307f597e69b9c001 334 SUPERFAMILY SSF117892 197 233 5.36E-8 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 25-04-2017 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 2 348 3.5E-163 T 25-04-2017 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 Pfam PF00710 Asparaginase, N-terminal 25 216 7.1E-63 T 25-04-2017 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 PIRSF PIRSF500176 22 348 1.9E-84 T 25-04-2017 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 Gene3D G3DSA:3.40.50.1170 23 231 1.3E-75 T 25-04-2017 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 PIRSF PIRSF001220 20 348 8.5E-95 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 25-04-2017 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 Gene3D G3DSA:3.40.50.40 235 346 1.0E-41 T 25-04-2017 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 SMART SM00870 25 342 2.2E-146 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 SUPERFAMILY SSF53774 23 347 5.36E-109 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 7.5E-23 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 7.5E-23 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS08305 5be5402c83cb690744b70c9937eb2bae 348 PRINTS PR00139 Asparaginase/glutaminase family signature 282 300 7.5E-23 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 SUPERFAMILY SSF54909 74 157 4.29E-22 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Gene3D G3DSA:3.30.70.920 65 161 2.9E-33 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 1.3E-24 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 SMART SM00344 12 121 3.0E-54 T 25-04-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 SUPERFAMILY SSF46785 12 70 8.35E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 25-04-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 58 4.6E-21 T 25-04-2017 A4U88_RS08250 d2c86f96dd5e89cda7ef1e80a8cd505b 164 Gene3D G3DSA:1.10.10.10 13 64 3.5E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12510 87dfd8c9d29e6747f9c93b796309f6a7 464 SUPERFAMILY SSF52467 289 463 2.0E-77 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS12510 87dfd8c9d29e6747f9c93b796309f6a7 464 PIRSF PIRSF000204 1 464 4.8E-238 T 25-04-2017 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 A4U88_RS12510 87dfd8c9d29e6747f9c93b796309f6a7 464 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 460 1.6E-199 T 25-04-2017 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 A4U88_RS12510 87dfd8c9d29e6747f9c93b796309f6a7 464 Gene3D G3DSA:3.40.50.1220 288 463 1.7E-91 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 244 1.5E-100 T 25-04-2017 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 204 218 - T 25-04-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 Gene3D G3DSA:3.40.190.80 148 243 2.2E-40 T 25-04-2017 A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 SUPERFAMILY SSF56655 1 242 2.36E-73 T 25-04-2017 A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 Gene3D G3DSA:3.30.540.10 2 147 5.2E-43 T 25-04-2017 A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 25-04-2017 IPR020583 Inositol monophosphatase, metal-binding site A4U88_RS01780 8cf7cfb0476a8a3527b06f4f20dc25b1 246 Pfam PF00459 Inositol monophosphatase family 6 233 4.7E-47 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 Gene3D G3DSA:3.40.50.300 20 278 1.2E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 Gene3D G3DSA:3.40.50.300 316 569 3.2E-81 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 Pfam PF00005 ABC transporter 41 204 1.1E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 Pfam PF00005 ABC transporter 345 495 3.5E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 256 288 7.0E-4 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 547 579 1.4E-8 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 ProSitePatterns PS00211 ABC transporters family signature. 468 482 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 ProSitePatterns PS00211 ABC transporters family signature. 177 191 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 SUPERFAMILY SSF52540 318 567 8.15E-72 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 SUPERFAMILY SSF52540 20 276 7.48E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 SMART SM00382 49 254 2.2E-16 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07505 de50a70ee6a3aa2f24284b157614f752 624 SMART SM00382 353 545 3.6E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS17090 90abaf6cdf967ec4a131fd9d29f2075f 331 Pfam PF00892 EamA-like transporter family 172 324 6.9E-15 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS17090 90abaf6cdf967ec4a131fd9d29f2075f 331 Pfam PF00892 EamA-like transporter family 25 159 1.5E-16 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS17090 90abaf6cdf967ec4a131fd9d29f2075f 331 SUPERFAMILY SSF103481 247 326 1.57E-14 T 25-04-2017 A4U88_RS17090 90abaf6cdf967ec4a131fd9d29f2075f 331 SUPERFAMILY SSF103481 60 163 1.57E-13 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF13193 AMP-binding enzyme C-terminal domain 585 658 8.1E-12 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SMART SM00823 Phosphopantetheine attachment site 684 753 0.0086 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SMART SM00823 Phosphopantetheine attachment site 1719 1788 0.082 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF00550 Phosphopantetheine attachment site 1723 1782 1.2E-8 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF00550 Phosphopantetheine attachment site 687 749 1.3E-7 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF00501 AMP-binding enzyme 1226 1609 5.3E-89 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF00501 AMP-binding enzyme 191 577 2.7E-79 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:3.40.50.980 187 336 1.3E-33 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:3.40.50.980 1224 1366 3.6E-38 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF13745 HxxPF-repeated domain 1078 1168 2.0E-16 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 212 601 1.7E-109 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1243 1630 2.3E-109 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SUPERFAMILY SSF56801 184 695 7.59E-132 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1357 1368 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 ProSitePatterns PS00455 Putative AMP-binding domain signature. 327 338 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SUPERFAMILY SSF47336 1712 1782 1.83E-12 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:2.30.38.10 1522 1599 1.2E-20 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:3.40.50.980 337 487 6.9E-33 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:3.40.50.980 1367 1521 3.7E-39 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SUPERFAMILY SSF56801 1221 1730 1.2E-125 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:3.30.300.30 1604 1722 9.3E-29 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:3.30.300.30 572 688 1.8E-28 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Pfam PF00668 Condensation domain 766 1056 4.3E-50 T 25-04-2017 IPR001242 Condensation domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SUPERFAMILY SSF47336 678 750 7.59E-13 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SUPERFAMILY SSF52777 946 1186 1.04E-48 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 SUPERFAMILY SSF52777 766 958 1.08E-35 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:2.30.38.10 488 569 9.5E-22 T 25-04-2017 A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:1.10.1200.10 1723 1789 4.4E-19 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS05265 574f60413ed63fd71854d6c8560d7677 1796 Gene3D G3DSA:1.10.1200.10 689 752 1.0E-16 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 Pfam PF00571 CBS domain 95 140 1.2E-8 T 25-04-2017 IPR000644 CBS domain A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 Pfam PF00571 CBS domain 149 202 1.3E-4 T 25-04-2017 IPR000644 CBS domain A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 SMART SM00116 158 206 4.8E-7 T 25-04-2017 IPR000644 CBS domain A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 SMART SM00116 96 144 2.9E-10 T 25-04-2017 IPR000644 CBS domain A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.2E-159 T 25-04-2017 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 Gene3D G3DSA:3.20.20.70 2 485 3.6E-191 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 84.242 T 25-04-2017 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 SUPERFAMILY SSF54631 94 203 4.42E-25 T 25-04-2017 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 8.0E-196 T 25-04-2017 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 25-04-2017 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 SUPERFAMILY SSF51412 217 477 1.24E-123 T 25-04-2017 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 SUPERFAMILY SSF51412 1 90 1.24E-123 T 25-04-2017 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 SMART SM01240 7 473 0.0 T 25-04-2017 A4U88_RS18320 98b590c79d16d64c3ed4b398a62ceaff 487 PIRSF PIRSF000130 1 487 5.8E-195 T 25-04-2017 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 A4U88_RS16980 b20a656b8a4f921c9409d73e5ddb570e 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 221 9.0E-16 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16980 b20a656b8a4f921c9409d73e5ddb570e 234 Gene3D G3DSA:1.10.3720.10 19 228 5.8E-37 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16980 b20a656b8a4f921c9409d73e5ddb570e 234 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 8.6E-14 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS16980 b20a656b8a4f921c9409d73e5ddb570e 234 SUPERFAMILY SSF161098 17 220 6.28E-37 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 PRINTS PR01009 Flagellar M-ring protein signature 124 142 1.8E-43 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 PRINTS PR01009 Flagellar M-ring protein signature 156 170 1.8E-43 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 PRINTS PR01009 Flagellar M-ring protein signature 370 394 1.8E-43 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 PRINTS PR01009 Flagellar M-ring protein signature 199 217 1.8E-43 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 PRINTS PR01009 Flagellar M-ring protein signature 268 286 1.8E-43 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 16 563 1.1E-176 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 Pfam PF08345 Flagellar M-ring protein C-terminal 255 443 5.9E-52 T 25-04-2017 IPR013556 Flagellar M-ring C-terminal A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 Pfam PF01514 Secretory protein of YscJ/FliF family 34 223 5.5E-76 T 25-04-2017 IPR006182 Secretory protein YscJ/FliF A4U88_RS14340 9e48ccd8e9feb4bd86afca6b400fa725 564 PIRSF PIRSF004862 6 564 4.9E-167 T 25-04-2017 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 PIRSF PIRSF036389 1 746 3.8E-191 T 25-04-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 619 695 2.1E-12 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 49 184 9.9E-7 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 334 571 5.5E-30 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 SUPERFAMILY SSF56003 42 241 1.5E-24 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Gene3D G3DSA:3.30.365.10 48 197 4.2E-24 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 SMART SM01008 213 308 8.9E-9 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS06645 608d260627335819d113c944d3ee3667 747 SUPERFAMILY SSF56003 334 740 2.79E-92 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 SUPERFAMILY SSF54665 214 304 2.86E-9 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Gene3D G3DSA:3.90.1170.50 198 304 5.9E-17 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Gene3D G3DSA:3.30.365.10 570 740 5.9E-32 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS06645 608d260627335819d113c944d3ee3667 747 Gene3D G3DSA:3.30.365.10 408 569 4.5E-27 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 290 312 - T 25-04-2017 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 188 208 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 363 390 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 286 315 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 392 421 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 440 469 9.6E-84 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 SUPERFAMILY SSF58104 232 513 8.11E-74 T 25-04-2017 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 Pfam PF00672 HAMP domain 193 259 2.3E-13 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 SUPERFAMILY SSF47170 39 173 1.96E-39 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 511 2.5E-62 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 SMART SM00283 265 512 4.4E-101 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 Gene3D G3DSA:1.10.287.950 279 484 1.3E-63 T 25-04-2017 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 SMART SM00319 44 178 1.5E-29 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 Gene3D G3DSA:1.20.120.30 36 175 6.4E-44 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 Pfam PF02203 Tar ligand binding domain homologue 2 175 7.0E-52 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14535 612ffe1de88923e278bb02bbd754244d 541 SMART SM00304 212 264 1.3E-10 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 SMART SM01228 546 617 9.3E-45 T 25-04-2017 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 25-04-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 25-04-2017 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.674 T 25-04-2017 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 1.5E-297 T 25-04-2017 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 Pfam PF01134 Glucose inhibited division protein A 8 398 2.0E-168 T 25-04-2017 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 Gene3D G3DSA:3.50.50.60 6 232 1.4E-55 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 SUPERFAMILY SSF51905 6 66 3.11E-51 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 SUPERFAMILY SSF51905 97 261 3.11E-51 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS24085 83581304c5a94318b4c6d3aeacb0586d 629 Pfam PF13932 GidA associated domain 403 616 2.4E-71 T 25-04-2017 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 SUPERFAMILY SSF52935 329 479 2.75E-38 T 25-04-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 SUPERFAMILY SSF51621 171 344 2.23E-88 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 SUPERFAMILY SSF51621 4 79 2.23E-88 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 1.2E-27 T 25-04-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 Gene3D G3DSA:3.20.20.60 172 331 1.6E-95 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 Gene3D G3DSA:3.20.20.60 6 76 1.6E-95 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 Gene3D G3DSA:2.40.33.10 77 170 8.2E-28 T 25-04-2017 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 SUPERFAMILY SSF50800 74 168 6.98E-25 T 25-04-2017 IPR011037 Pyruvate kinase-like, insert domain A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 4.8E-51 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 1.6E-132 T 25-04-2017 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 1.4E-172 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 Gene3D G3DSA:3.40.1380.20 332 479 3.0E-38 T 25-04-2017 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS13550 7d7d96645fed35bf9a18eeeb0be78a3d 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 25-04-2017 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 2.5E-20 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 2.5E-20 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 2.5E-20 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 2.5E-20 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 SMART SM01130 3 287 1.4E-104 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 Pfam PF00701 Dihydrodipicolinate synthetase family 4 285 5.6E-67 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 Gene3D G3DSA:3.20.20.70 2 286 1.1E-89 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 25-04-2017 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 PIRSF PIRSF001365 1 292 6.5E-79 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 39 56 - T 25-04-2017 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 7 285 2.1E-78 T 25-04-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 SUPERFAMILY SSF51569 2 286 3.14E-84 T 25-04-2017 A4U88_RS10905 59d1418feae8f07b015340ed93a01e42 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 3 285 47.854 T 25-04-2017 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 Gene3D G3DSA:1.20.1250.20 23 225 5.0E-22 T 25-04-2017 A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 Gene3D G3DSA:1.20.1250.20 252 438 5.1E-16 T 25-04-2017 A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 Pfam PF00083 Sugar (and other) transporter 24 230 3.7E-24 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 ProSitePatterns PS00216 Sugar transport proteins signature 1. 309 326 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 31 425 1.3E-149 T 25-04-2017 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 SUPERFAMILY SSF103473 18 439 6.02E-65 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS23285 5881265853b40310d293272aac0ff1e3 440 Pfam PF07690 Major Facilitator Superfamily 283 438 2.5E-13 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS15530 b778c497cac85c705d1ceac8cae9d1fa 733 Pfam PF13599 Pentapeptide repeats (9 copies) 601 670 7.8E-11 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS15530 b778c497cac85c705d1ceac8cae9d1fa 733 Pfam PF13599 Pentapeptide repeats (9 copies) 431 498 5.0E-11 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS15530 b778c497cac85c705d1ceac8cae9d1fa 733 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 49 277 5.7E-35 T 25-04-2017 IPR018683 Domain of unknown function DUF2169 A4U88_RS15530 b778c497cac85c705d1ceac8cae9d1fa 733 SUPERFAMILY SSF141571 601 718 2.35E-17 T 25-04-2017 A4U88_RS15530 b778c497cac85c705d1ceac8cae9d1fa 733 SUPERFAMILY SSF141571 423 523 6.93E-16 T 25-04-2017 A4U88_RS15530 b778c497cac85c705d1ceac8cae9d1fa 733 SUPERFAMILY SSF141571 506 592 1.83E-9 T 25-04-2017 A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 Pfam PF12464 Maltose acetyltransferase 6 56 2.2E-6 T 25-04-2017 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 136 170 6.8E-11 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 74 109 1.0E-5 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 SMART SM01266 4 58 7.4E-11 T 25-04-2017 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 SUPERFAMILY SSF51161 2 188 5.41E-46 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 Gene3D G3DSA:2.160.10.10 2 189 9.3E-56 T 25-04-2017 A4U88_RS21885 cdad7268c9d16ee1b86cab31defab6cc 190 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 144 172 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS04830 fd59d2a17d0884a696c844ad42d0ea47 138 Gene3D G3DSA:1.10.940.10 3 137 1.5E-47 T 25-04-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 A4U88_RS04830 fd59d2a17d0884a696c844ad42d0ea47 138 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 132 3.2E-46 T 25-04-2017 IPR011605 NusB antitermination factor GO:0006353 A4U88_RS04830 fd59d2a17d0884a696c844ad42d0ea47 138 Pfam PF01029 NusB family 7 131 2.8E-37 T 25-04-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 A4U88_RS04830 fd59d2a17d0884a696c844ad42d0ea47 138 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 4 135 24.242 T 25-04-2017 IPR011605 NusB antitermination factor GO:0006353 A4U88_RS04830 fd59d2a17d0884a696c844ad42d0ea47 138 SUPERFAMILY SSF48013 3 136 4.19E-44 T 25-04-2017 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 Gene3D G3DSA:3.40.50.1980 171 291 2.3E-43 T 25-04-2017 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00690 Adhesin family signature 178 199 1.3E-28 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00690 Adhesin family signature 54 67 1.3E-28 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00690 Adhesin family signature 231 249 1.3E-28 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00690 Adhesin family signature 67 84 1.3E-28 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00690 Adhesin family signature 23 41 1.3E-28 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00690 Adhesin family signature 257 276 1.3E-28 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 287 1.5E-79 T 25-04-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00691 Adhesin B signature 178 195 5.5E-24 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00691 Adhesin B signature 227 244 5.5E-24 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00691 Adhesin B signature 48 66 5.5E-24 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00691 Adhesin B signature 67 86 5.5E-24 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00691 Adhesin B signature 270 288 5.5E-24 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 PRINTS PR00691 Adhesin B signature 23 44 5.5E-24 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 SUPERFAMILY SSF53807 20 291 1.96E-84 T 25-04-2017 A4U88_RS05110 0595b740c82c1ce00d1a2b537bb5d165 292 Gene3D G3DSA:3.40.50.1980 18 170 5.9E-49 T 25-04-2017 A4U88_RS07930 5428464a9be2aca86b918cafa2c55c74 311 Gene3D G3DSA:2.60.40.1090 177 305 2.8E-5 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07930 5428464a9be2aca86b918cafa2c55c74 311 Gene3D G3DSA:2.60.40.1090 15 176 4.7E-35 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07930 5428464a9be2aca86b918cafa2c55c74 311 Pfam PF09160 FimH, mannose binding 17 165 3.5E-13 T 25-04-2017 IPR015243 FimH, mannose-binding domain A4U88_RS07930 5428464a9be2aca86b918cafa2c55c74 311 SUPERFAMILY SSF49401 178 308 4.37E-11 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS07930 5428464a9be2aca86b918cafa2c55c74 311 Pfam PF00419 Fimbrial protein 175 308 7.8E-13 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07930 5428464a9be2aca86b918cafa2c55c74 311 SUPERFAMILY SSF49401 17 176 7.45E-5 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS09085 77bd9cb73975bf05e950dcf44c6d0397 94 Gene3D G3DSA:3.30.70.1060 14 74 0.001 T 25-04-2017 A4U88_RS09085 77bd9cb73975bf05e950dcf44c6d0397 94 Pfam PF03795 YCII-related domain 1 79 3.0E-8 T 25-04-2017 IPR005545 YCII-related A4U88_RS09085 77bd9cb73975bf05e950dcf44c6d0397 94 SUPERFAMILY SSF54909 1 80 4.29E-12 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 5.6E-19 T 25-04-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 SUPERFAMILY SSF53790 214 454 1.83E-77 T 25-04-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 25-04-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Pfam PF13241 Putative NAD(P)-binding 6 115 1.2E-24 T 25-04-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Gene3D G3DSA:3.30.950.10 332 455 7.5E-46 T 25-04-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Pfam PF14824 Sirohaem biosynthesis protein central 121 146 2.0E-8 T 25-04-2017 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 25-04-2017 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Gene3D G3DSA:3.30.160.110 113 148 1.9E-19 T 25-04-2017 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Gene3D G3DSA:3.40.1010.10 215 331 7.1E-46 T 25-04-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 50.936 T 25-04-2017 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 SUPERFAMILY SSF51735 1 112 1.62E-24 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 SUPERFAMILY SSF75615 114 207 1.44E-26 T 25-04-2017 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 8.5E-90 T 25-04-2017 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 206 5.7E-69 T 25-04-2017 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 426 6.6E-48 T 25-04-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Gene3D G3DSA:3.40.50.720 1 112 4.9E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 Gene3D G3DSA:1.10.8.210 149 211 1.1E-22 T 25-04-2017 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS22615 13a26ec6e4ee1a516e4245cd19335610 467 PIRSF PIRSF036426 1 465 4.8E-199 T 25-04-2017 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 A4U88_RS20290 132cce758e628cdb9b7e4ebe861192e0 105 SUPERFAMILY SSF50022 1 100 1.7E-31 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS20290 132cce758e628cdb9b7e4ebe861192e0 105 Pfam PF00355 Rieske [2Fe-2S] domain 2 89 1.1E-19 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS20290 132cce758e628cdb9b7e4ebe861192e0 105 Gene3D G3DSA:2.102.10.10 1 100 1.4E-31 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF04539 Sigma-70 region 3 176 250 9.0E-21 T 25-04-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Gene3D G3DSA:1.10.601.10 37 165 3.0E-54 T 25-04-2017 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 SUPERFAMILY SSF88659 169 243 8.72E-15 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 12 330 39.935 T 25-04-2017 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 289 315 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Gene3D G3DSA:1.10.10.10 259 324 4.4E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 268 280 2.5E-27 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 304 315 2.5E-27 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 289 304 2.5E-27 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 120 133 2.5E-27 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 PRINTS PR00046 Major sigma-70 factor signature 144 152 2.5E-27 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 120 133 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 SUPERFAMILY SSF88659 227 321 5.05E-23 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF04545 Sigma-70, region 4 264 317 1.8E-15 T 25-04-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF04542 Sigma-70 region 2 96 165 2.9E-21 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 319 4.1E-35 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Gene3D G3DSA:1.10.10.10 169 218 2.3E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 SUPERFAMILY SSF88946 58 166 1.96E-45 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 Pfam PF00140 Sigma-70 factor, region 1.2 58 89 5.2E-11 T 25-04-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS03680 8fc359a39c5286d6af0c82a47d70bbec 332 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 330 1.5E-144 T 25-04-2017 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11745 6d902347d4730e58af2e78bcc0f67d78 482 SMART SM00729 72 297 3.1E-19 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS11745 6d902347d4730e58af2e78bcc0f67d78 482 Gene3D G3DSA:3.80.30.20 81 271 4.3E-21 T 25-04-2017 IPR023404 Radical SAM, alpha/beta horseshoe A4U88_RS11745 6d902347d4730e58af2e78bcc0f67d78 482 SUPERFAMILY SSF102114 54 470 1.2E-59 T 25-04-2017 A4U88_RS11745 6d902347d4730e58af2e78bcc0f67d78 482 Pfam PF04055 Radical SAM superfamily 80 253 1.7E-15 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS03330 86bec521439da6b35d2786e0daa9806d 106 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 22 103 2.4E-26 T 25-04-2017 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 A4U88_RS03330 86bec521439da6b35d2786e0daa9806d 106 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 16.568 T 25-04-2017 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 A4U88_RS03330 86bec521439da6b35d2786e0daa9806d 106 Pfam PF04999 Cell division protein FtsL 11 104 3.1E-33 T 25-04-2017 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 SUPERFAMILY SSF103088 220 347 3.01E-34 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 ProSitePatterns PS01068 OmpA-like domain. 268 312 - T 25-04-2017 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 Pfam PF01389 OmpA-like transmembrane domain 23 206 1.1E-73 T 25-04-2017 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 Gene3D G3DSA:3.30.1330.60 222 347 9.7E-40 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 SUPERFAMILY SSF56925 22 206 1.65E-40 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01021 OMPA domain signature 281 297 4.5E-23 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01021 OMPA domain signature 266 281 4.5E-23 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01021 OMPA domain signature 234 256 4.5E-23 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 177 191 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 191 205 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 326 339 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 114 130 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 251 270 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 290 309 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 PRINTS PR01022 Outer membrane protein A signature 222 237 4.6E-65 T 25-04-2017 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 Gene3D G3DSA:2.40.160.20 11 221 1.9E-77 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS08555 aeb9e068e41fd8764bb8877cf5744a23 359 Pfam PF00691 OmpA family 233 321 4.1E-22 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS23035 a6516bac452351e541982fa8e592c878 181 SUPERFAMILY SSF49401 28 181 1.99E-21 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS23035 a6516bac452351e541982fa8e592c878 181 Gene3D G3DSA:2.60.40.1090 27 181 2.3E-22 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23035 a6516bac452351e541982fa8e592c878 181 Pfam PF16970 Type-1 fimbrial protein, A 55 180 5.2E-15 T 25-04-2017 A4U88_RS13915 ff286f1be0d79f90dc7a3ed915cd997d 63 Pfam PF07358 Protein of unknown function (DUF1482) 1 57 5.1E-30 T 25-04-2017 IPR009954 Protein of unknown function DUF1482 A4U88_RS21270 53e06ff39e1c454de284258c34f9bb24 312 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 301 1.0E-127 T 25-04-2017 IPR005911 Protein YhcC-like GO:0051536 A4U88_RS21270 53e06ff39e1c454de284258c34f9bb24 312 Pfam PF16199 Radical_SAM C-terminal domain 208 281 1.1E-15 T 25-04-2017 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 A4U88_RS21270 53e06ff39e1c454de284258c34f9bb24 312 SMART SM00729 23 247 1.9E-40 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS21270 53e06ff39e1c454de284258c34f9bb24 312 Pfam PF04055 Radical SAM superfamily 32 201 2.2E-16 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS21270 53e06ff39e1c454de284258c34f9bb24 312 Gene3D G3DSA:3.80.30.20 23 249 5.7E-34 T 25-04-2017 IPR023404 Radical SAM, alpha/beta horseshoe A4U88_RS21270 53e06ff39e1c454de284258c34f9bb24 312 SUPERFAMILY SSF102114 13 242 1.57E-44 T 25-04-2017 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Gene3D G3DSA:3.30.70.20 104 138 2.4E-11 T 25-04-2017 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Gene3D G3DSA:3.30.70.20 139 172 6.4E-16 T 25-04-2017 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 133 144 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS00205 23a4625d05acc81ff550067722486856 300 SUPERFAMILY SSF54862 28 274 3.35E-73 T 25-04-2017 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Pfam PF09163 Formate dehydrogenase N, transmembrane 246 289 1.3E-22 T 25-04-2017 IPR015246 Formate dehydrogenase, transmembrane A4U88_RS00205 23a4625d05acc81ff550067722486856 300 PIRSF PIRSF036298 1 300 1.6E-165 T 25-04-2017 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Pfam PF13247 4Fe-4S dicluster domain 92 188 2.8E-25 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS00205 23a4625d05acc81ff550067722486856 300 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 290 1.8E-144 T 25-04-2017 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Gene3D G3DSA:1.20.5.480 247 293 5.7E-26 T 25-04-2017 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Gene3D G3DSA:3.30.70.20 30 103 3.2E-37 T 25-04-2017 A4U88_RS00205 23a4625d05acc81ff550067722486856 300 Gene3D G3DSA:3.30.70.20 173 227 3.2E-37 T 25-04-2017 A4U88_RS01500 5b22af2f80165bd9516130c4ff8e73e5 107 Gene3D G3DSA:3.30.70.830 6 106 7.3E-38 T 25-04-2017 A4U88_RS01500 5b22af2f80165bd9516130c4ff8e73e5 107 Pfam PF03091 CutA1 divalent ion tolerance protein 7 104 1.6E-32 T 25-04-2017 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 A4U88_RS01500 5b22af2f80165bd9516130c4ff8e73e5 107 SUPERFAMILY SSF54913 5 106 2.82E-34 T 25-04-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta A4U88_RS10225 6f0f02318f42030e1a43f4da3c9a5a5c 130 Gene3D G3DSA:3.10.400.10 3 129 5.0E-47 T 25-04-2017 A4U88_RS10225 6f0f02318f42030e1a43f4da3c9a5a5c 130 Pfam PF04266 ASCH domain 26 127 1.8E-21 T 25-04-2017 IPR007374 ASCH domain A4U88_RS10225 6f0f02318f42030e1a43f4da3c9a5a5c 130 PIRSF PIRSF021320 1 130 8.4E-40 T 25-04-2017 IPR009326 Protein of unknown function DUF984 A4U88_RS10225 6f0f02318f42030e1a43f4da3c9a5a5c 130 SUPERFAMILY SSF88697 3 128 6.46E-42 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS10225 6f0f02318f42030e1a43f4da3c9a5a5c 130 SMART SM01022 15 128 4.6E-38 T 25-04-2017 IPR007374 ASCH domain A4U88_RS21005 872bc24608f9b14be9c8c8bb3fef7bd6 242 Pfam PF02660 Glycerol-3-phosphate acyltransferase 41 214 4.0E-51 T 25-04-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 A4U88_RS21005 872bc24608f9b14be9c8c8bb3fef7bd6 242 SMART SM01207 40 215 1.5E-86 T 25-04-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 A4U88_RS21005 872bc24608f9b14be9c8c8bb3fef7bd6 242 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 32 224 2.7E-79 T 25-04-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 A4U88_RS21005 872bc24608f9b14be9c8c8bb3fef7bd6 242 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 37 223 18.718 T 25-04-2017 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 A4U88_RS02770 b3cf9a721fdd41e333fc9f8a18727fa7 409 Gene3D G3DSA:1.20.1250.20 22 217 2.4E-27 T 25-04-2017 A4U88_RS02770 b3cf9a721fdd41e333fc9f8a18727fa7 409 Pfam PF07690 Major Facilitator Superfamily 30 371 6.3E-26 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS02770 b3cf9a721fdd41e333fc9f8a18727fa7 409 TIGRFAM TIGR01272 gluP: glucose/galactose transporter WARNING 104 402 2.1E-61 T 25-04-2017 IPR005964 Bacterial glucose/galactose transporter GO:0005354|GO:0005355|GO:0009276|GO:0015757|GO:0015758|GO:0016021 A4U88_RS02770 b3cf9a721fdd41e333fc9f8a18727fa7 409 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 24 405 7.9E-98 T 25-04-2017 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 A4U88_RS02770 b3cf9a721fdd41e333fc9f8a18727fa7 409 Gene3D G3DSA:1.20.1250.20 230 402 1.6E-12 T 25-04-2017 A4U88_RS02770 b3cf9a721fdd41e333fc9f8a18727fa7 409 SUPERFAMILY SSF103473 14 406 1.96E-47 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 SUPERFAMILY SSF47831 198 309 1.83E-25 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 SUPERFAMILY SSF51621 420 714 1.36E-95 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 25-04-2017 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 1.5E-24 T 25-04-2017 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 1.5E-24 T 25-04-2017 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 1.5E-24 T 25-04-2017 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 1.5E-24 T 25-04-2017 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 SUPERFAMILY SSF55781 2 159 2.84E-31 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Pfam PF01590 GAF domain 18 151 8.3E-15 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 SMART SM00065 17 164 5.4E-26 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Gene3D G3DSA:3.20.20.60 420 736 4.3E-99 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 321 391 1.8E-14 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 SUPERFAMILY SSF52009 293 413 4.97E-24 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Gene3D G3DSA:1.10.274.10 197 300 1.1E-33 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 175 731 9.6E-128 T 25-04-2017 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Gene3D G3DSA:3.30.450.40 1 159 1.9E-47 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 419 707 1.8E-101 T 25-04-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 25-04-2017 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Gene3D G3DSA:3.50.30.10 301 416 7.5E-28 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS19465 f769935a8a5febc52f7e2cd3c35a7336 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 9.4E-24 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS18880 d07c61449669ad7daa8f63c08b595a8e 390 SUPERFAMILY SSF103473 6 387 1.05E-47 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS18880 d07c61449669ad7daa8f63c08b595a8e 390 Pfam PF07690 Major Facilitator Superfamily 219 386 1.2E-14 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18880 d07c61449669ad7daa8f63c08b595a8e 390 Gene3D G3DSA:1.20.1250.20 213 388 2.9E-20 T 25-04-2017 A4U88_RS18880 d07c61449669ad7daa8f63c08b595a8e 390 Gene3D G3DSA:1.20.1250.20 10 190 1.5E-19 T 25-04-2017 A4U88_RS10310 6db8ae06e72024ddad1f604be8b18103 265 SUPERFAMILY SSF53335 103 219 5.82E-10 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS10310 6db8ae06e72024ddad1f604be8b18103 265 Gene3D G3DSA:3.40.50.720 116 207 1.3E-7 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10310 6db8ae06e72024ddad1f604be8b18103 265 Pfam PF03059 Nicotianamine synthase protein 72 230 7.7E-8 T 25-04-2017 IPR004298 Nicotianamine synthase GO:0030410|GO:0030418 MetaCyc: PWY-5912|MetaCyc: PWY-5957 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 SUPERFAMILY SSF50494 38 264 5.83E-65 T 25-04-2017 IPR009003 Peptidase S1, PA clan A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Gene3D G3DSA:2.30.42.10 270 364 1.5E-31 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Gene3D G3DSA:2.40.10.10 38 157 4.3E-35 T 25-04-2017 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 SMART SM00228 381 448 4.1E-8 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 SMART SM00228 268 350 3.1E-14 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 378 444 1.1E-10 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 PRINTS PR00834 HtrA/DegQ protease family signature 165 189 2.0E-58 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 PRINTS PR00834 HtrA/DegQ protease family signature 103 115 2.0E-58 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 PRINTS PR00834 HtrA/DegQ protease family signature 308 320 2.0E-58 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 PRINTS PR00834 HtrA/DegQ protease family signature 200 217 2.0E-58 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 PRINTS PR00834 HtrA/DegQ protease family signature 222 239 2.0E-58 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 PRINTS PR00834 HtrA/DegQ protease family signature 124 144 2.0E-58 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Pfam PF13180 PDZ domain 279 359 4.4E-17 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Gene3D G3DSA:2.40.10.10 158 269 1.2E-43 T 25-04-2017 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 SUPERFAMILY SSF50156 226 351 9.6E-25 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Gene3D G3DSA:2.30.42.10 388 453 6.6E-18 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 454 4.5E-161 T 25-04-2017 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 SUPERFAMILY SSF50156 378 455 4.21E-15 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21330 c6d91b00ed2d55e5bd4e6e9e46987b67 456 Pfam PF13365 Trypsin-like peptidase domain 93 229 6.7E-32 T 25-04-2017 A4U88_RS04885 1a59d1b8c9ec75a5c6baa953eb24cdb1 200 SUPERFAMILY SSF52317 5 189 1.53E-45 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS04885 1a59d1b8c9ec75a5c6baa953eb24cdb1 200 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 183 1.5E-62 T 25-04-2017 IPR006287 Protein deglycase DJ-1 GO:0006517|GO:0030091 A4U88_RS04885 1a59d1b8c9ec75a5c6baa953eb24cdb1 200 Gene3D G3DSA:3.40.50.880 4 187 2.4E-54 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS04885 1a59d1b8c9ec75a5c6baa953eb24cdb1 200 Pfam PF01965 DJ-1/PfpI family 4 170 4.7E-43 T 25-04-2017 IPR002818 DJ-1/PfpI A4U88_RS03035 ca8b57dac98a1ab7442c117802451e5f 195 SUPERFAMILY SSF53218 3 188 6.02E-47 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS03035 ca8b57dac98a1ab7442c117802451e5f 195 Gene3D G3DSA:3.40.980.10 3 188 3.9E-52 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS03035 ca8b57dac98a1ab7442c117802451e5f 195 SMART SM00852 7 153 1.0E-21 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS03035 ca8b57dac98a1ab7442c117802451e5f 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 3.0E-27 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS03035 ca8b57dac98a1ab7442c117802451e5f 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 147 2.1E-40 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS03035 ca8b57dac98a1ab7442c117802451e5f 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 25-04-2017 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 SUPERFAMILY SSF53067 8 221 5.5E-62 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.30.420.40 7 138 4.9E-33 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 2.7E-161 T 25-04-2017 IPR020823 Cell division protein FtsA GO:0007049 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 SUPERFAMILY SSF53067 198 384 1.07E-46 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 4.5E-30 T 25-04-2017 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.5 T 25-04-2017 IPR020823 Cell division protein FtsA GO:0007049 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.90.640.10 235 297 4.6E-18 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.30.420.40 169 209 2.2E-6 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 PIRSF PIRSF003101 1 418 3.6E-153 T 25-04-2017 IPR020823 Cell division protein FtsA GO:0007049 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Pfam PF14450 Cell division protein FtsA 207 381 5.9E-24 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 SMART SM00842 10 196 2.4E-96 T 25-04-2017 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.30.420.40 210 234 4.3E-29 T 25-04-2017 A4U88_RS03385 efe8dbbd35f5aef061c6d273f9d93597 418 Gene3D G3DSA:3.30.420.40 298 359 4.3E-29 T 25-04-2017 A4U88_RS20085 2b1e33956245960e243bd5866d08c522 283 SUPERFAMILY SSF63829 4 283 1.02E-61 T 25-04-2017 A4U88_RS20085 2b1e33956245960e243bd5866d08c522 283 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 147 169 6.5E-10 T 25-04-2017 IPR005511 Senescence marker protein-30 (SMP-30) A4U88_RS20085 2b1e33956245960e243bd5866d08c522 283 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 17 34 6.5E-10 T 25-04-2017 IPR005511 Senescence marker protein-30 (SMP-30) A4U88_RS20085 2b1e33956245960e243bd5866d08c522 283 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 253 271 6.5E-10 T 25-04-2017 IPR005511 Senescence marker protein-30 (SMP-30) A4U88_RS20085 2b1e33956245960e243bd5866d08c522 283 Gene3D G3DSA:2.120.10.30 5 283 3.0E-70 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS20085 2b1e33956245960e243bd5866d08c522 283 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 16 271 1.9E-52 T 25-04-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region A4U88_RS20805 3e70a530be0b032cf9b191a808b2bee6 387 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 173 201 - T 25-04-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 A4U88_RS20805 3e70a530be0b032cf9b191a808b2bee6 387 Gene3D G3DSA:3.40.50.1970 1 184 7.4E-54 T 25-04-2017 A4U88_RS20805 3e70a530be0b032cf9b191a808b2bee6 387 Gene3D G3DSA:1.20.1090.10 185 386 1.2E-50 T 25-04-2017 A4U88_RS20805 3e70a530be0b032cf9b191a808b2bee6 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 363 5.9E-89 T 25-04-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 A4U88_RS20805 3e70a530be0b032cf9b191a808b2bee6 387 SUPERFAMILY SSF56796 2 385 2.22E-104 T 25-04-2017 A4U88_RS20805 3e70a530be0b032cf9b191a808b2bee6 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 25-04-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 SUPERFAMILY SSF48179 284 486 3.37E-64 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 4.8E-44 T 25-04-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 216 464 3.7E-89 T 25-04-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 Gene3D G3DSA:1.10.1040.10 283 487 3.3E-73 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 Gene3D G3DSA:3.40.50.720 6 282 6.4E-103 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 SUPERFAMILY SSF51735 7 282 1.34E-88 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 25-04-2017 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 7.0E-20 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 PRINTS PR00084 Mannitol dehydrogenase signature 249 264 7.0E-20 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 7.0E-20 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS18155 80a6c2a66405a28b6e4a83dfe607b175 501 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 7.0E-20 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 Gene3D G3DSA:3.40.1190.10 94 299 7.3E-66 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 435 5.9E-125 T 25-04-2017 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 SUPERFAMILY SSF53244 299 437 1.22E-51 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 Pfam PF02875 Mur ligase family, glutamate ligase domain 301 373 4.4E-8 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 SUPERFAMILY SSF53623 96 297 7.33E-56 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 Pfam PF08245 Mur ligase middle domain 110 280 1.1E-26 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 Gene3D G3DSA:3.40.50.720 3 92 1.0E-25 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 Gene3D G3DSA:3.90.190.20 301 433 1.6E-43 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 437 34.388 T 25-04-2017 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03355 497496aa3f5a4c02ebb6bb5b1f9807b4 439 SUPERFAMILY SSF51984 3 94 1.96E-23 T 25-04-2017 A4U88_RS13640 ece3c31ddc6c55f83422415a0d7a241d 323 SUPERFAMILY SSF53335 89 316 8.59E-32 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13640 ece3c31ddc6c55f83422415a0d7a241d 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 321 3.9E-145 T 25-04-2017 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 A4U88_RS13640 ece3c31ddc6c55f83422415a0d7a241d 323 Gene3D G3DSA:3.40.50.150 91 317 2.6E-29 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13640 ece3c31ddc6c55f83422415a0d7a241d 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 2.1E-165 T 25-04-2017 IPR027555 tRNA (mo5U34)-methyltransferase-like A4U88_RS13640 ece3c31ddc6c55f83422415a0d7a241d 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 53.602 T 25-04-2017 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 Pfam PF03466 LysR substrate binding domain 88 296 2.7E-34 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 Gene3D G3DSA:3.40.190.10 94 178 6.9E-14 T 25-04-2017 A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 SUPERFAMILY SSF53850 89 299 7.96E-36 T 25-04-2017 A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 4.2E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 SUPERFAMILY SSF46785 3 85 1.71E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 Gene3D G3DSA:3.40.190.10 179 264 6.8E-15 T 25-04-2017 A4U88_RS08680 9d25662735606f45f11f9ee6e5e310c8 309 Gene3D G3DSA:1.10.10.10 2 81 1.9E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09185 5949824b86d5e2447ac0cd066d205bad 55 Pfam PF01783 Ribosomal L32p protein family 2 54 3.0E-19 T 25-04-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS09185 5949824b86d5e2447ac0cd066d205bad 55 SUPERFAMILY SSF57829 2 54 4.46E-18 T 25-04-2017 IPR011332 Zinc-binding ribosomal protein GO:0006412 A4U88_RS09185 5949824b86d5e2447ac0cd066d205bad 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.023 T 25-04-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS09185 5949824b86d5e2447ac0cd066d205bad 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 2.6E-19 T 25-04-2017 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 SUPERFAMILY SSF51690 120 393 9.42E-86 T 25-04-2017 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 SUPERFAMILY SSF54675 2 137 3.53E-42 T 25-04-2017 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 396 48.665 T 25-04-2017 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 395 8.2E-165 T 25-04-2017 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 395 2.6E-80 T 25-04-2017 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 Gene3D G3DSA:3.20.140.10 5 395 1.2E-145 T 25-04-2017 A4U88_RS08440 cf12ab17d45485878ac9b0a716eda76e 401 PIRSF PIRSF000484 1 396 1.3E-60 T 25-04-2017 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 Pfam PF01106 NifU-like domain 111 177 8.3E-21 T 25-04-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 3.0E-26 T 25-04-2017 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 3.2E-13 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 46.302 T 25-04-2017 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 3.1E-102 T 25-04-2017 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 SUPERFAMILY SSF117916 95 184 8.5E-25 T 25-04-2017 A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 SUPERFAMILY SSF89360 1 97 2.55E-21 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS22785 ea248394366ebdf99e9a426f43ddb624 191 Gene3D G3DSA:2.60.300.12 1 97 1.5E-18 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 Pfam PF03466 LysR substrate binding domain 88 286 9.6E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 Gene3D G3DSA:1.10.10.10 1 84 1.7E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.5E-24 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 Gene3D G3DSA:3.40.190.10 179 262 4.1E-24 T 25-04-2017 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 Gene3D G3DSA:3.40.190.10 90 178 1.1E-16 T 25-04-2017 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 SUPERFAMILY SSF53850 89 284 1.23E-38 T 25-04-2017 A4U88_RS19000 6afa9135969d4e269c16b92b2cd2239e 292 SUPERFAMILY SSF46785 1 85 8.27E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.9E-14 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 7.9E-14 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.9E-14 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 Gene3D G3DSA:3.40.50.880 2 190 1.1E-65 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 8.1E-37 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 8.1E-37 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 8.1E-37 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 8.1E-37 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 8.1E-37 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 8.1E-37 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 3.8E-96 T 25-04-2017 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 9.2E-6 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 9.2E-6 T 25-04-2017 A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 Pfam PF00117 Glutamine amidotransferase class-I 3 189 1.5E-53 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS22520 9037bcedfaa64ac210611452c8fb812e 191 SUPERFAMILY SSF52317 1 190 1.8E-53 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 PIRSF PIRSF006487 20 330 1.2E-8 T 25-04-2017 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 SUPERFAMILY SSF101790 245 326 3.73E-24 T 25-04-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 323 49.588 T 25-04-2017 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 SUPERFAMILY SSF103025 12 243 7.85E-62 T 25-04-2017 A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 Gene3D G3DSA:3.30.70.1400 28 113 8.5E-33 T 25-04-2017 A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 188 253 2.9E-25 T 25-04-2017 IPR017703 YgfZ/GcvT conserved site A4U88_RS19890 d2f1ff1585e26fb564664b4d02bb3d1d 330 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 136 1.1E-6 T 25-04-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 Pfam PF13411 MerR HTH family regulatory protein 2 69 5.5E-21 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 Gene3D G3DSA:1.10.1660.10 1 56 2.1E-28 T 25-04-2017 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 SMART SM00422 2 71 1.1E-32 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 Gene3D G3DSA:1.10.1660.10 57 135 9.8E-32 T 25-04-2017 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 5.6E-13 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 5.6E-13 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 5.6E-13 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 4.5E-68 T 25-04-2017 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 A4U88_RS22205 0a19a52ff32470dc47567052c6f57565 143 SUPERFAMILY SSF46955 2 121 2.6E-34 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS10115 8e8263a97251bdca6a4438215477e0a6 176 TIGRFAM TIGR01806 CM_mono2: putative chorismate mutase 25 129 3.5E-37 T 25-04-2017 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS10115 8e8263a97251bdca6a4438215477e0a6 176 Gene3D G3DSA:1.20.59.10 23 92 5.3E-9 T 25-04-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS10115 8e8263a97251bdca6a4438215477e0a6 176 Pfam PF01817 Chorismate mutase type II 23 92 4.4E-9 T 25-04-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS10115 8e8263a97251bdca6a4438215477e0a6 176 SMART SM00830 22 94 1.6E-12 T 25-04-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS10115 8e8263a97251bdca6a4438215477e0a6 176 SUPERFAMILY SSF48600 24 170 7.25E-35 T 25-04-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS10115 8e8263a97251bdca6a4438215477e0a6 176 PIRSF PIRSF026640 2 173 3.1E-51 T 25-04-2017 IPR008240 Chorismate mutase, periplasmic KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 SUPERFAMILY SSF54211 1 181 1.01E-44 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 SUPERFAMILY SSF55666 153 237 7.59E-26 T 25-04-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 25-04-2017 IPR018336 Ribonuclease PH, conserved site A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 8.0E-24 T 25-04-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 49.019 T 25-04-2017 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 6.7E-112 T 25-04-2017 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 Pfam PF03725 3' exoribonuclease family, domain 2 157 222 8.4E-11 T 25-04-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS23825 6765b9420c44b949dff58a78341d59d6 238 Gene3D G3DSA:3.30.230.70 5 237 9.4E-35 T 25-04-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS19580 ea33c928f9ad54928d07922a4117ddc4 427 Gene3D G3DSA:1.10.400.20 294 408 2.5E-50 T 25-04-2017 A4U88_RS19580 ea33c928f9ad54928d07922a4117ddc4 427 SUPERFAMILY SSF51569 5 422 1.04E-168 T 25-04-2017 A4U88_RS19580 ea33c928f9ad54928d07922a4117ddc4 427 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 422 5.2E-206 T 25-04-2017 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 A4U88_RS19580 ea33c928f9ad54928d07922a4117ddc4 427 Gene3D G3DSA:3.20.20.70 6 293 2.1E-138 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS19580 ea33c928f9ad54928d07922a4117ddc4 427 PIRSF PIRSF009264 1 427 6.4E-191 T 25-04-2017 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 A4U88_RS19580 ea33c928f9ad54928d07922a4117ddc4 427 Pfam PF08013 Tagatose 6 phosphate kinase 4 422 1.4E-200 T 25-04-2017 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 Gene3D G3DSA:2.40.30.20 5 105 3.2E-31 T 25-04-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 Gene3D G3DSA:2.40.30.20 106 201 3.3E-27 T 25-04-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 SUPERFAMILY SSF63380 1 93 2.81E-27 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 203 4.1E-83 T 25-04-2017 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 PIRSF PIRSF000498 1 211 2.3E-72 T 25-04-2017 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 SUPERFAMILY SSF63380 94 202 4.51E-32 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 Pfam PF00677 Lumazine binding domain 3 87 5.7E-19 T 25-04-2017 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS10745 18b0331d2e6d40e18a07110b74a06d40 216 Pfam PF00677 Lumazine binding domain 100 185 6.6E-19 T 25-04-2017 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS17910 61ed78753837196fc73b7e24157b232e 358 Pfam PF01594 Domain of unknown function DUF20 20 345 1.2E-78 T 25-04-2017 IPR002549 Transmembrane protein TqsA-like A4U88_RS01455 8427f04f2e4238cb6b6617e6ebebb75b 123 ProDom PD484789 PAPG ADHESION ADHESIN FIMBRIAL PRECURSOR SIGNAL FIMBRIA PAPGII PRSG CELL 13 120 5.0E-4 T 25-04-2017 IPR005309 PapG, chaperone-binding A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF81665 714 753 1.83E-19 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF81665 369 463 1.83E-19 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF81665 221 272 1.83E-19 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF81653 271 368 3.01E-19 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Gene3D G3DSA:3.40.1110.10 483 594 6.3E-22 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Pfam PF00122 E1-E2 ATPase 239 460 3.0E-60 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Gene3D G3DSA:2.70.150.10 221 369 6.4E-25 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Gene3D G3DSA:3.40.50.1000 443 482 3.2E-44 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Gene3D G3DSA:3.40.50.1000 595 731 3.2E-44 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 471 477 - T 25-04-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Gene3D G3DSA:3.30.70.100 81 144 9.9E-18 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 665 684 4.2E-29 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 318 332 4.2E-29 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 614 624 4.2E-29 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 592 603 4.2E-29 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 483 4.2E-29 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 688 700 4.2E-29 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF56784 544 765 2.53E-53 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF56784 467 487 2.53E-53 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 218 769 7.0E-156 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Pfam PF00702 haloacid dehalogenase-like hydrolase 465 678 8.0E-36 T 25-04-2017 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 Pfam PF00403 Heavy-metal-associated domain 87 142 3.3E-11 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 ProSitePatterns PS01047 Heavy-metal-associated domain. 87 116 - T 25-04-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 SUPERFAMILY SSF55008 81 144 1.57E-14 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 218 767 2.3E-178 T 25-04-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00941 Cadmium-transporting ATPase signature 85 94 5.2E-6 T 25-04-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00941 Cadmium-transporting ATPase signature 96 117 5.2E-6 T 25-04-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 PRINTS PR00941 Cadmium-transporting ATPase signature 253 273 5.2E-6 T 25-04-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 A4U88_RS00795 d2a803ab1bc83e0fe7ced48ebf3d65ee 772 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 241 743 9.5E-81 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 SUPERFAMILY SSF46894 183 244 5.1E-19 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 Gene3D G3DSA:1.10.10.10 188 244 7.2E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 Pfam PF00196 Bacterial regulatory proteins, luxR family 189 241 1.5E-16 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 203 2.4E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 219 231 2.4E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 219 2.4E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 ProSitePatterns PS00622 LuxR-type HTH domain signature. 203 230 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02600 55e1b2fa56ecc845ddb27179ad977d60 252 SMART SM00421 186 243 2.4E-20 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16240 d23216b46457024342776b1906477c99 62 Pfam PF06440 DNA polymerase III, theta subunit 5 61 2.0E-14 T 25-04-2017 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 A4U88_RS16240 d23216b46457024342776b1906477c99 62 Gene3D G3DSA:1.10.1110.10 1 61 4.4E-19 T 25-04-2017 IPR011325 DNA polymerase III-theta, core, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS16240 d23216b46457024342776b1906477c99 62 SUPERFAMILY SSF46575 3 60 2.22E-18 T 25-04-2017 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 A4U88_RS16240 d23216b46457024342776b1906477c99 62 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 5 60 6.0E-6 T 25-04-2017 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SMART SM00260 514 654 6.5E-43 T 25-04-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:1.20.120.160 3 143 6.3E-42 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:3.30.70.400 157 226 1.5E-29 T 25-04-2017 IPR015162 CheY binding A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SUPERFAMILY SSF55052 161 225 1.73E-19 T 25-04-2017 IPR015162 CheY binding A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SUPERFAMILY SSF50341 521 653 1.96E-31 T 25-04-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SUPERFAMILY SSF47384 275 338 2.59E-15 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 500 4.4E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 441 4.4E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 519 4.4E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 PRINTS PR00344 Bacterial sensor protein C-terminal signature 466 476 4.4E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:2.30.30.40 522 543 7.8E-25 T 25-04-2017 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:2.30.30.40 610 653 7.8E-25 T 25-04-2017 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Pfam PF09078 CheY binding 162 224 4.9E-24 T 25-04-2017 IPR015162 CheY binding A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:2.40.50.180 546 609 6.6E-15 T 25-04-2017 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 275 337 3.6E-17 T 25-04-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SMART SM01231 274 337 7.4E-22 T 25-04-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SMART SM00387 382 522 1.9E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Pfam PF01584 CheW-like domain 527 653 2.2E-26 T 25-04-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SMART SM00073 5 102 4.5E-28 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:1.10.287.560 275 338 4.8E-23 T 25-04-2017 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SUPERFAMILY SSF47226 5 126 3.89E-31 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 SUPERFAMILY SSF55874 340 520 7.2E-35 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Pfam PF01627 Hpt domain 8 104 2.3E-18 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Gene3D G3DSA:3.30.565.10 339 521 3.3E-33 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14550 41a8cf6e8ee5527b9ec70c59b3d930f9 667 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 521 1.0E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SUPERFAMILY SSF47226 662 775 1.31E-31 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SUPERFAMILY SSF55785 142 267 4.19E-21 T 25-04-2017 IPR000014 PAS domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SMART SM00387 394 507 5.3E-36 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SUPERFAMILY SSF52172 526 663 3.13E-30 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 276 5.1E-14 T 25-04-2017 IPR000014 PAS domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Pfam PF00072 Response regulator receiver domain 528 639 7.6E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Gene3D G3DSA:1.10.287.970 1 88 2.4E-40 T 25-04-2017 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Gene3D G3DSA:3.30.450.20 142 267 2.7E-21 T 25-04-2017 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SUPERFAMILY SSF47384 269 347 3.92E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Gene3D G3DSA:1.20.120.160 677 775 6.5E-37 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Gene3D G3DSA:3.40.50.2300 526 655 2.0E-32 T 25-04-2017 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SMART SM00448 526 639 1.0E-26 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 3.3E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SMART SM00073 676 773 4.3E-18 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 1.3E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 1.3E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 1.3E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 1.3E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Gene3D G3DSA:1.10.287.130 274 343 1.1E-15 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Pfam PF00989 PAS fold 157 266 6.3E-18 T 25-04-2017 IPR013767 PAS fold GO:0006355 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SUPERFAMILY SSF55874 336 505 6.94E-42 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Pfam PF01627 Hpt domain 687 761 6.7E-13 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 1.1E-28 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 PIRSF PIRSF003182 1 777 0.0 T 25-04-2017 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SMART SM00091 155 221 4.6E-7 T 25-04-2017 IPR000014 PAS domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 Gene3D G3DSA:3.30.565.10 348 507 6.1E-43 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS21265 fdbd4ca2540a0cd1cfc81aadaebddc90 777 SMART SM00388 282 347 3.0E-18 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS04700 210eac6cb1950ee56669feee98f94b0e 304 SUPERFAMILY SSF53067 3 301 2.63E-62 T 25-04-2017 A4U88_RS04700 210eac6cb1950ee56669feee98f94b0e 304 Pfam PF00480 ROK family 3 301 5.1E-88 T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS04700 210eac6cb1950ee56669feee98f94b0e 304 Gene3D G3DSA:3.30.420.40 132 280 8.9E-50 T 25-04-2017 A4U88_RS04700 210eac6cb1950ee56669feee98f94b0e 304 ProSitePatterns PS01125 ROK family signature. 130 157 - T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS04700 210eac6cb1950ee56669feee98f94b0e 304 Gene3D G3DSA:3.30.420.40 2 131 2.9E-36 T 25-04-2017 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 2.6E-32 T 25-04-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 25-04-2017 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 SUPERFAMILY SSF54534 82 157 1.05E-24 T 25-04-2017 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 1.4E-60 T 25-04-2017 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.841 T 25-04-2017 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 SUPERFAMILY SSF46557 3 78 3.79E-29 T 25-04-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 25-04-2017 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 Gene3D G3DSA:1.10.287.180 1 75 8.5E-36 T 25-04-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 4.6E-29 T 25-04-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 PIRSF PIRSF006092 1 158 1.5E-55 T 25-04-2017 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 A4U88_RS01910 83fe610d3898a74cfe241ef2ad90e7c7 158 Gene3D G3DSA:3.10.50.30 79 157 4.5E-32 T 25-04-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 A4U88_RS19765 3051d0ff7183c19e67d6eb65349482db 189 Pfam PF03729 Short repeat of unknown function (DUF308) 84 153 3.5E-9 T 25-04-2017 IPR005325 Protein of unknown function DUF308, membrane A4U88_RS19765 3051d0ff7183c19e67d6eb65349482db 189 Pfam PF03729 Short repeat of unknown function (DUF308) 26 97 1.5E-12 T 25-04-2017 IPR005325 Protein of unknown function DUF308, membrane A4U88_RS02595 a7d3e71a9ce3e13ade5821e69f342839 375 Gene3D G3DSA:1.20.1090.10 184 321 4.3E-23 T 25-04-2017 A4U88_RS02595 a7d3e71a9ce3e13ade5821e69f342839 375 SUPERFAMILY SSF56796 10 314 1.44E-62 T 25-04-2017 A4U88_RS02595 a7d3e71a9ce3e13ade5821e69f342839 375 Gene3D G3DSA:3.40.50.1970 6 183 6.9E-37 T 25-04-2017 A4U88_RS02595 a7d3e71a9ce3e13ade5821e69f342839 375 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 303 9.7E-69 T 25-04-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 A4U88_RS07715 3a1c75cdb68f7b8623a5a39362a940e5 111 Gene3D G3DSA:3.40.50.2000 2 109 2.3E-22 T 25-04-2017 A4U88_RS07715 3a1c75cdb68f7b8623a5a39362a940e5 111 SUPERFAMILY SSF53756 1 110 6.28E-31 T 25-04-2017 A4U88_RS07715 3a1c75cdb68f7b8623a5a39362a940e5 111 Pfam PF00534 Glycosyl transferases group 1 2 110 5.8E-22 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS20020 fe873f283458cc699284f284ffd196d9 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 36.593 T 25-04-2017 IPR011978 Uncharacterised protein family UPF0149 A4U88_RS20020 fe873f283458cc699284f284ffd196d9 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 16 166 9.0E-14 T 25-04-2017 IPR011978 Uncharacterised protein family UPF0149 A4U88_RS20020 fe873f283458cc699284f284ffd196d9 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 177 5.6E-38 T 25-04-2017 IPR011978 Uncharacterised protein family UPF0149 A4U88_RS20020 fe873f283458cc699284f284ffd196d9 192 SUPERFAMILY SSF101327 8 176 1.96E-50 T 25-04-2017 IPR011978 Uncharacterised protein family UPF0149 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 190 2.3E-26 T 25-04-2017 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 3.3E-12 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 PIRSF PIRSF005763 1 263 3.7E-96 T 25-04-2017 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 Pfam PF03459 TOBE domain 198 259 2.5E-13 T 25-04-2017 IPR005116 Transport-associated OB, type 1 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 Pfam PF03459 TOBE domain 124 188 1.3E-16 T 25-04-2017 IPR005116 Transport-associated OB, type 1 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 SUPERFAMILY SSF50331 122 191 7.29E-20 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 SUPERFAMILY SSF46785 2 105 2.18E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 Gene3D G3DSA:2.40.50.100 184 253 1.2E-19 T 25-04-2017 A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 Gene3D G3DSA:1.10.10.10 1 118 4.7E-44 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 107 6.4E-37 T 25-04-2017 IPR003725 Molybdenum-binding protein ModE, N-terminal A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 SUPERFAMILY SSF50331 173 259 2.34E-16 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS06170 e7b294317653f51c91c96381f667943b 263 Gene3D G3DSA:2.40.50.100 119 183 2.6E-32 T 25-04-2017 A4U88_RS23860 31979687d4d463ed2979725159c8f1c2 91 Gene3D G3DSA:3.90.940.10 1 78 1.7E-16 T 25-04-2017 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 A4U88_RS23860 31979687d4d463ed2979725159c8f1c2 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.087 T 25-04-2017 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS23860 31979687d4d463ed2979725159c8f1c2 91 Pfam PF01192 RNA polymerase Rpb6 10 60 5.7E-17 T 25-04-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 A4U88_RS23860 31979687d4d463ed2979725159c8f1c2 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.9E-29 T 25-04-2017 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS23860 31979687d4d463ed2979725159c8f1c2 91 SMART SM01409 8 61 1.6E-16 T 25-04-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 A4U88_RS23860 31979687d4d463ed2979725159c8f1c2 91 SUPERFAMILY SSF63562 1 79 1.15E-25 T 25-04-2017 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 A4U88_RS00260 a41f3758664c6085468261227207dd96 415 Pfam PF07690 Major Facilitator Superfamily 25 361 1.0E-29 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS00260 a41f3758664c6085468261227207dd96 415 SUPERFAMILY SSF103473 7 404 1.96E-51 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00260 a41f3758664c6085468261227207dd96 415 Gene3D G3DSA:1.20.1250.20 22 196 2.1E-24 T 25-04-2017 A4U88_RS00260 a41f3758664c6085468261227207dd96 415 Gene3D G3DSA:1.20.1250.20 218 401 6.4E-4 T 25-04-2017 A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 SUPERFAMILY SSF51338 3 64 2.13E-23 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 SUPERFAMILY SSF51338 495 544 2.13E-23 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 Gene3D G3DSA:2.30.40.10 477 540 3.2E-4 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 SUPERFAMILY SSF51556 63 125 6.5E-45 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 SUPERFAMILY SSF51556 205 495 6.5E-45 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 Pfam PF07969 Amidohydrolase family 52 536 1.2E-123 T 25-04-2017 IPR013108 Amidohydrolase 3 A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 Gene3D G3DSA:3.20.20.140 205 476 7.9E-19 T 25-04-2017 A4U88_RS06955 ca8de6afa923fd331b5ea7cc170a593c 623 Gene3D G3DSA:2.30.40.10 4 94 3.4E-17 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 309 323 - T 25-04-2017 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SMART SM00437 272 527 1.8E-121 T 25-04-2017 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SMART SM00436 133 221 8.7E-48 T 25-04-2017 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Pfam PF01751 Toprim domain 5 142 2.4E-33 T 25-04-2017 IPR006171 Toprim domain A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SUPERFAMILY SSF57783 744 807 3.4E-19 T 25-04-2017 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 635 4.8E-259 T 25-04-2017 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 723 55.148 T 25-04-2017 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:3.30.65.10 597 629 3.3E-11 T 25-04-2017 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:3.30.65.10 745 806 3.1E-26 T 25-04-2017 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:3.30.65.10 707 743 2.0E-10 T 25-04-2017 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SUPERFAMILY SSF56712 3 609 4.97E-204 T 25-04-2017 IPR023405 DNA topoisomerase, type IA, core domain A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 708 745 4.9E-12 T 25-04-2017 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 597 622 7.2E-6 T 25-04-2017 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SMART SM00493 3 132 5.1E-33 T 25-04-2017 IPR006171 Toprim domain A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:2.70.20.10 338 473 7.7E-35 T 25-04-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:2.70.20.10 213 333 7.6E-30 T 25-04-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:3.40.50.140 1 163 5.0E-60 T 25-04-2017 IPR006171 Toprim domain A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SUPERFAMILY SSF57783 809 864 2.55E-22 T 25-04-2017 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 758 793 3.5E-12 T 25-04-2017 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Pfam PF08272 Topoisomerase I zinc-ribbon-like 824 862 3.4E-23 T 25-04-2017 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 5.9E-37 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 106 119 5.9E-37 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 490 504 5.9E-37 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 390 406 5.9E-37 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 5.9E-37 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Pfam PF01131 DNA topoisomerase 157 565 8.9E-127 T 25-04-2017 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:1.10.460.10 164 211 5.2E-58 T 25-04-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:1.10.460.10 474 596 5.2E-58 T 25-04-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 SUPERFAMILY SSF57783 703 743 1.87E-6 T 25-04-2017 A4U88_RS12960 e1da10ba82bea19c5f1b919f433134cf 865 Gene3D G3DSA:2.20.25.10 808 865 1.3E-31 T 25-04-2017 A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 Pfam PF00571 CBS domain 274 325 1.4E-5 T 25-04-2017 IPR000644 CBS domain A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 Pfam PF00571 CBS domain 206 261 9.8E-6 T 25-04-2017 IPR000644 CBS domain A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 Gene3D G3DSA:3.10.580.10 201 325 5.5E-40 T 25-04-2017 A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 50 318 1.5E-124 T 25-04-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 Gene3D G3DSA:3.40.50.10490 17 200 3.2E-53 T 25-04-2017 A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 SUPERFAMILY SSF53697 13 301 5.34E-68 T 25-04-2017 A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 SMART SM00116 215 263 16.0 T 25-04-2017 IPR000644 CBS domain A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 SMART SM00116 280 327 0.53 T 25-04-2017 IPR000644 CBS domain A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 Pfam PF01380 SIS domain 50 177 2.1E-32 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS21380 e82d51f24d5e83dda582fd3b474fadc5 328 PIRSF PIRSF004692 1 328 2.5E-134 T 25-04-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 A4U88_RS03630 1b9032bdeed35d059f6e1879ffd67b84 240 Pfam PF00005 ABC transporter 17 165 4.2E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS03630 1b9032bdeed35d059f6e1879ffd67b84 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS03630 1b9032bdeed35d059f6e1879ffd67b84 240 SUPERFAMILY SSF52540 1 235 1.61E-78 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03630 1b9032bdeed35d059f6e1879ffd67b84 240 PIRSF PIRSF039085 1 240 5.4E-119 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS03630 1b9032bdeed35d059f6e1879ffd67b84 240 Gene3D G3DSA:3.40.50.300 1 237 4.5E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03630 1b9032bdeed35d059f6e1879ffd67b84 240 SMART SM00382 26 213 2.3E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 1.5E-7 T 25-04-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 1.5E-7 T 25-04-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 1.5E-7 T 25-04-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 1.5E-7 T 25-04-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 Gene3D G3DSA:1.10.390.10 308 451 1.1E-33 T 25-04-2017 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 Gene3D G3DSA:1.25.50.10 546 870 3.2E-128 T 25-04-2017 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 SUPERFAMILY SSF55486 204 450 2.93E-74 T 25-04-2017 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 SUPERFAMILY SSF63737 1 193 2.88E-48 T 25-04-2017 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 Pfam PF01433 Peptidase family M1 26 384 3.5E-68 T 25-04-2017 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 Pfam PF11940 Domain of unknown function (DUF3458) 459 828 2.3E-144 T 25-04-2017 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal A4U88_RS08450 d178132fb72e937e1f039c120ba7cb77 872 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 870 0.0 T 25-04-2017 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 A4U88_RS22810 5b217317aac4f7bf55219671df897d85 108 SUPERFAMILY SSF52821 2 102 3.54E-28 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS22810 5b217317aac4f7bf55219671df897d85 108 SMART SM00450 7 102 2.1E-20 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS22810 5b217317aac4f7bf55219671df897d85 108 Pfam PF00581 Rhodanese-like domain 16 98 4.9E-14 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS22810 5b217317aac4f7bf55219671df897d85 108 Gene3D G3DSA:3.40.250.10 2 100 2.8E-28 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS22810 5b217317aac4f7bf55219671df897d85 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 106 33.828 T 25-04-2017 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 A4U88_RS10870 d98dc8db0ef36d22f07d26dc8871e8ed 384 Gene3D G3DSA:3.30.420.40 145 327 2.1E-72 T 25-04-2017 A4U88_RS10870 d98dc8db0ef36d22f07d26dc8871e8ed 384 SUPERFAMILY SSF53067 143 340 3.5E-26 T 25-04-2017 A4U88_RS10870 d98dc8db0ef36d22f07d26dc8871e8ed 384 SUPERFAMILY SSF53067 66 111 3.5E-26 T 25-04-2017 A4U88_RS10870 d98dc8db0ef36d22f07d26dc8871e8ed 384 SUPERFAMILY SSF53067 5 36 3.5E-26 T 25-04-2017 A4U88_RS10870 d98dc8db0ef36d22f07d26dc8871e8ed 384 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 41.73 T 25-04-2017 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 A4U88_RS10870 d98dc8db0ef36d22f07d26dc8871e8ed 384 Pfam PF03702 Uncharacterised protein family (UPF0075) 5 366 2.1E-165 T 25-04-2017 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 SUPERFAMILY SSF56053 1 82 1.22E-23 T 25-04-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 SUPERFAMILY SSF56053 83 177 8.76E-36 T 25-04-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 Gene3D G3DSA:3.90.930.12 2 82 3.3E-29 T 25-04-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 PIRSF PIRSF002162 1 177 4.6E-45 T 25-04-2017 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.551 T 25-04-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.4E-73 T 25-04-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 25-04-2017 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.4E-33 T 25-04-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.4E-33 T 25-04-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.4E-33 T 25-04-2017 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 Pfam PF00347 Ribosomal protein L6 11 82 3.6E-20 T 25-04-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 Pfam PF00347 Ribosomal protein L6 90 164 2.0E-18 T 25-04-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22270 ba126741694d3eca6b4cbac1121a2cfc 177 Gene3D G3DSA:3.90.930.12 83 177 3.9E-40 T 25-04-2017 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS19670 8308b2e9c5d8db99490ba60b66a27a68 375 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 251 4.9E-17 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS19670 8308b2e9c5d8db99490ba60b66a27a68 375 Gene3D G3DSA:2.40.50.100 171 203 3.4E-17 T 25-04-2017 A4U88_RS19670 8308b2e9c5d8db99490ba60b66a27a68 375 Gene3D G3DSA:2.40.50.100 48 82 3.4E-17 T 25-04-2017 A4U88_RS19670 8308b2e9c5d8db99490ba60b66a27a68 375 SUPERFAMILY SSF111369 41 228 2.09E-21 T 25-04-2017 A4U88_RS19670 8308b2e9c5d8db99490ba60b66a27a68 375 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 26 373 3.0E-39 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS02290 90e2279615974e09cddcf765cd3fba8f 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 3.9E-142 T 25-04-2017 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 A4U88_RS02290 90e2279615974e09cddcf765cd3fba8f 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 1.8E-73 T 25-04-2017 IPR005495 Permease LptG/LptF-related GO:0016021 A4U88_RS10440 8f8dbbb852757cbb2c1ff35d742de29b 221 Pfam PF01464 Transglycosylase SLT domain 58 180 1.1E-27 T 25-04-2017 IPR008258 Transglycosylase SLT domain 1 A4U88_RS10440 8f8dbbb852757cbb2c1ff35d742de29b 221 Gene3D G3DSA:1.10.530.10 52 220 1.4E-34 T 25-04-2017 A4U88_RS10440 8f8dbbb852757cbb2c1ff35d742de29b 221 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 76 104 - T 25-04-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 A4U88_RS10440 8f8dbbb852757cbb2c1ff35d742de29b 221 SUPERFAMILY SSF53955 54 219 6.76E-30 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 Gene3D G3DSA:3.50.50.60 111 308 1.3E-33 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 301 1.1E-47 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 239 260 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 277 295 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 5.6E-77 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 25-04-2017 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.4E-40 T 25-04-2017 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.4E-40 T 25-04-2017 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.4E-40 T 25-04-2017 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 267 289 1.4E-40 T 25-04-2017 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.4E-40 T 25-04-2017 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 SUPERFAMILY SSF51905 3 315 9.26E-54 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 314 4.3E-123 T 25-04-2017 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 A4U88_RS08245 52e2bf12d2f2c1c5feb1a6814e056b6c 323 Gene3D G3DSA:3.50.50.60 4 110 6.8E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 Gene3D G3DSA:3.30.1330.60 101 216 1.3E-39 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 Pfam PF13488 Glycine zipper 37 85 3.8E-11 T 25-04-2017 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 SUPERFAMILY SSF103088 103 218 5.36E-38 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 199 219 7.4E-5 T 25-04-2017 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 179 198 7.4E-5 T 25-04-2017 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 161 178 7.4E-5 T 25-04-2017 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 Pfam PF00691 OmpA family 115 210 7.3E-22 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 ProSitePatterns PS01068 OmpA-like domain. 148 192 - T 25-04-2017 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01021 OMPA domain signature 116 138 4.4E-13 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01021 OMPA domain signature 161 177 4.4E-13 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS00110 deced5abe711931a7b32cfab05e124bf 220 PRINTS PR01021 OMPA domain signature 146 161 4.4E-13 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 3.5E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 SUPERFAMILY SSF53850 92 292 3.98E-30 T 25-04-2017 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 Gene3D G3DSA:1.10.10.10 7 88 1.8E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 Gene3D G3DSA:3.40.190.10 176 255 2.0E-18 T 25-04-2017 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 Pfam PF03466 LysR substrate binding domain 89 288 1.5E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 Gene3D G3DSA:3.40.190.10 93 175 2.0E-18 T 25-04-2017 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.4E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.4E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.4E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06595 b24d63d99c01a900f3accb9f0f880f62 306 SUPERFAMILY SSF46785 3 85 1.11E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12375 5eceb0f602e4dd41e309ec1f00ed7990 342 Pfam PF01544 CorA-like Mg2+ transporter protein 52 333 7.6E-53 T 25-04-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 A4U88_RS12375 5eceb0f602e4dd41e309ec1f00ed7990 342 Gene3D G3DSA:1.20.58.340 272 338 2.9E-16 T 25-04-2017 A4U88_RS12375 5eceb0f602e4dd41e309ec1f00ed7990 342 SUPERFAMILY SSF143865 45 269 9.81E-41 T 25-04-2017 A4U88_RS12375 5eceb0f602e4dd41e309ec1f00ed7990 342 Gene3D G3DSA:1.20.58.340 159 261 2.6E-6 T 25-04-2017 A4U88_RS12375 5eceb0f602e4dd41e309ec1f00ed7990 342 SUPERFAMILY SSF144083 277 338 3.4E-14 T 25-04-2017 A4U88_RS12375 5eceb0f602e4dd41e309ec1f00ed7990 342 Gene3D G3DSA:3.30.460.20 43 151 2.9E-8 T 25-04-2017 A4U88_RS11320 3311a6f9c2ccf8032ce8781c1cfca8db 250 PIRSF PIRSF015736 1 250 8.1E-68 T 25-04-2017 IPR026286 Maleate isomerase/Arylmalonate decarboxylase A4U88_RS11320 3311a6f9c2ccf8032ce8781c1cfca8db 250 Hamap MF_00943 Maleate isomerase [maiA]. 5 250 50.619 T 25-04-2017 IPR028615 Maleate isomerase GO:0050076 KEGG: 00650+5.2.1.1|KEGG: 00760+5.2.1.1|MetaCyc: PWY-5033|MetaCyc: PWY-6993|MetaCyc: PWY-7128|MetaCyc: PWY-722 A4U88_RS09910 b419d26a96d311f77e0d689cd6f7d983 148 Pfam PF00293 NUDIX domain 4 115 3.9E-17 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS09910 b419d26a96d311f77e0d689cd6f7d983 148 SUPERFAMILY SSF55811 2 117 1.22E-29 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS09910 b419d26a96d311f77e0d689cd6f7d983 148 Gene3D G3DSA:3.90.79.10 2 138 1.6E-31 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS09910 b419d26a96d311f77e0d689cd6f7d983 148 PRINTS PR00502 NUDIX hydrolase family signature 31 45 1.6E-5 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS09910 b419d26a96d311f77e0d689cd6f7d983 148 PRINTS PR00502 NUDIX hydrolase family signature 45 60 1.6E-5 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS09910 b419d26a96d311f77e0d689cd6f7d983 148 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS13995 75de7ed606f2aca386a928aec99c5227 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 1.1E-98 T 25-04-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 A4U88_RS13995 75de7ed606f2aca386a928aec99c5227 335 PIRSF PIRSF000267 2 335 1.2E-89 T 25-04-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 A4U88_RS13995 75de7ed606f2aca386a928aec99c5227 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 3.9E-43 T 25-04-2017 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 Gene3D G3DSA:3.20.20.80 4 106 8.2E-127 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 Gene3D G3DSA:3.20.20.80 176 475 8.2E-127 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 Gene3D G3DSA:2.60.40.1180 476 552 1.4E-20 T 25-04-2017 IPR013780 Glycosyl hydrolase, all-beta A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 SUPERFAMILY SSF51011 475 552 1.13E-17 T 25-04-2017 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 7 550 2.1E-253 T 25-04-2017 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 Pfam PF11941 Domain of unknown function (DUF3459) 459 550 8.5E-14 T 25-04-2017 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 SMART SM00642 15 414 1.1E-157 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 Gene3D G3DSA:3.90.400.10 107 175 8.8E-30 T 25-04-2017 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 Pfam PF00128 Alpha amylase, catalytic domain 30 371 5.6E-125 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS02180 3b593e53f9f988f900dc6a7cedeaaf83 554 SUPERFAMILY SSF51445 5 472 1.36E-154 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 39 1146 28.78 T 25-04-2017 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SUPERFAMILY SSF52540 358 471 7.97E-27 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Pfam PF02559 CarD-like/TRCF domain 485 580 1.2E-24 T 25-04-2017 IPR003711 CarD-like/TRCF domain A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Gene3D G3DSA:3.40.50.300 803 968 4.7E-37 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 153 1087 0.0 T 25-04-2017 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Gene3D G3DSA:3.30.2060.10 138 215 2.6E-14 T 25-04-2017 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SMART SM00487 605 795 2.4E-33 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Gene3D G3DSA:3.40.50.300 594 791 1.8E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SUPERFAMILY SSF143517 1000 1152 1.1E-43 T 25-04-2017 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SMART SM01058 484 581 9.4E-52 T 25-04-2017 IPR003711 CarD-like/TRCF domain A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SUPERFAMILY SSF52540 787 995 2.38E-49 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SUPERFAMILY SSF52540 20 348 4.25E-101 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SMART SM00490 831 915 2.2E-19 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Pfam PF03461 TRCF domain 1014 1105 1.2E-28 T 25-04-2017 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SUPERFAMILY SSF141259 476 553 4.58E-24 T 25-04-2017 IPR003711 CarD-like/TRCF domain A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SMART SM00982 1013 1113 2.3E-48 T 25-04-2017 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Pfam PF00270 DEAD/DEAH box helicase 610 770 1.3E-20 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 SUPERFAMILY SSF52540 528 788 9.1E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09750 ce99ac3e5d2a29f43aa25e5aee1c3b0c 1157 Pfam PF00271 Helicase conserved C-terminal domain 811 914 1.7E-18 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS10570 447e4289aa89597b152e0aec5d5a91cf 152 Pfam PF00877 NlpC/P60 family 45 151 2.9E-29 T 25-04-2017 IPR000064 Endopeptidase, NLPC/P60 domain A4U88_RS10570 447e4289aa89597b152e0aec5d5a91cf 152 SUPERFAMILY SSF54001 33 152 1.24E-39 T 25-04-2017 A4U88_RS10570 447e4289aa89597b152e0aec5d5a91cf 152 Gene3D G3DSA:3.90.1720.10 34 152 3.8E-41 T 25-04-2017 IPR000064 Endopeptidase, NLPC/P60 domain A4U88_RS22240 4d06cdcbdaa96a508fb6a347610bdc61 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 25-04-2017 A4U88_RS22240 4d06cdcbdaa96a508fb6a347610bdc61 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.7E-22 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22240 4d06cdcbdaa96a508fb6a347610bdc61 38 Pfam PF00444 Ribosomal protein L36 1 38 1.6E-20 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22240 4d06cdcbdaa96a508fb6a347610bdc61 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22240 4d06cdcbdaa96a508fb6a347610bdc61 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.971 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22240 4d06cdcbdaa96a508fb6a347610bdc61 38 SUPERFAMILY SSF57840 1 38 5.49E-17 T 25-04-2017 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Gene3D G3DSA:1.10.287.130 232 301 7.6E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 SUPERFAMILY SSF47384 222 304 2.35E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 SMART SM00387 351 452 8.9E-24 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Gene3D G3DSA:3.30.565.10 310 452 1.6E-29 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 3.0E-5 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 434 3.0E-5 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 SUPERFAMILY SSF55874 294 452 1.23E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 448 1.5E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Pfam PF08521 Two-component sensor kinase N-terminal 19 159 2.6E-6 T 25-04-2017 IPR013727 Two-component sensor kinase, N-terminal A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 SMART SM00388 239 305 5.2E-12 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Gene3D G3DSA:1.20.5.1040 104 188 3.4E-27 T 25-04-2017 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Gene3D G3DSA:1.20.5.1040 2 85 1.1E-23 T 25-04-2017 A4U88_RS20390 7de40a1cd16f17eefc25f139125e2425 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 304 1.9E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS11595 9e4872199a03c8e5d82d427a91157740 304 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 60 286 1.9E-42 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS11595 9e4872199a03c8e5d82d427a91157740 304 Gene3D G3DSA:3.40.190.10 250 286 1.2E-27 T 25-04-2017 A4U88_RS11595 9e4872199a03c8e5d82d427a91157740 304 Gene3D G3DSA:3.40.190.10 56 138 1.2E-27 T 25-04-2017 A4U88_RS11595 9e4872199a03c8e5d82d427a91157740 304 SUPERFAMILY SSF53850 10 286 2.78E-49 T 25-04-2017 A4U88_RS11595 9e4872199a03c8e5d82d427a91157740 304 Gene3D G3DSA:3.40.190.10 139 245 3.3E-9 T 25-04-2017 A4U88_RS11595 9e4872199a03c8e5d82d427a91157740 304 SMART SM00062 59 293 9.5E-32 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS20355 e6c8982a851b66168773b3eb903432b9 180 Gene3D G3DSA:3.90.1140.10 6 177 4.7E-48 T 25-04-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase A4U88_RS20355 e6c8982a851b66168773b3eb903432b9 180 Pfam PF02834 LigT like Phosphoesterase 12 89 4.3E-12 T 25-04-2017 IPR014051 Phosphoesterase, HXTX A4U88_RS20355 e6c8982a851b66168773b3eb903432b9 180 Pfam PF02834 LigT like Phosphoesterase 95 164 1.8E-5 T 25-04-2017 IPR014051 Phosphoesterase, HXTX A4U88_RS20355 e6c8982a851b66168773b3eb903432b9 180 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 6 174 1.3E-36 T 25-04-2017 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 A4U88_RS20355 e6c8982a851b66168773b3eb903432b9 180 SUPERFAMILY SSF55144 6 175 2.51E-42 T 25-04-2017 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase A4U88_RS20355 e6c8982a851b66168773b3eb903432b9 180 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 174 22.175 T 25-04-2017 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 A4U88_RS01415 6785f1330bb765341355f7edb22004a2 251 SUPERFAMILY SSF46894 26 103 1.19E-10 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS01415 6785f1330bb765341355f7edb22004a2 251 Pfam PF00486 Transcriptional regulatory protein, C terminal 32 101 9.9E-11 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS01415 6785f1330bb765341355f7edb22004a2 251 SMART SM00862 25 101 4.8E-8 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS01415 6785f1330bb765341355f7edb22004a2 251 Gene3D G3DSA:1.10.10.10 12 103 8.8E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 104 121 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 149 3.4E-45 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 PRINTS PR00969 Pili chaperone signature 28 37 1.4E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 PRINTS PR00969 Pili chaperone signature 77 98 1.4E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 PRINTS PR00969 Pili chaperone signature 166 181 1.4E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 PRINTS PR00969 Pili chaperone signature 131 146 1.4E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 PRINTS PR00969 Pili chaperone signature 105 122 1.4E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 Gene3D G3DSA:2.60.40.360 27 149 4.8E-46 T 25-04-2017 IPR008962 PapD-like A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 SUPERFAMILY SSF49354 23 149 3.4E-44 T 25-04-2017 IPR008962 PapD-like A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 172 227 4.6E-14 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 Gene3D G3DSA:2.60.40.1070 152 229 2.5E-22 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS23030 a7c803b16eafed3f4c4b738aecb9f78d 234 SUPERFAMILY SSF49584 143 230 9.55E-21 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 25-04-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 SUPERFAMILY SSF53187 292 373 1.73E-64 T 25-04-2017 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 SUPERFAMILY SSF53187 5 178 1.73E-64 T 25-04-2017 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 5.3E-45 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 Gene3D G3DSA:3.30.70.360 188 288 2.2E-34 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 Gene3D G3DSA:3.40.630.10 5 187 2.9E-75 T 25-04-2017 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 Gene3D G3DSA:3.40.630.10 316 373 2.9E-75 T 25-04-2017 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 SUPERFAMILY SSF55031 179 288 2.99E-29 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 6.6E-179 T 25-04-2017 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 Pfam PF07687 Peptidase dimerisation domain 175 282 1.8E-24 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 97 136 - T 25-04-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 A4U88_RS17855 41994282b2ceddf35fc79e533a04a266 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.869 T 25-04-2017 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 40.844 T 25-04-2017 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 SUPERFAMILY SSF52313 6 235 2.09E-95 T 25-04-2017 IPR023591 Ribosomal protein S2, flavodoxin-like domain A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 25-04-2017 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 6.3E-37 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 6.3E-37 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 6.3E-37 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 6.3E-37 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 6.3E-37 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 6.3E-37 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 8.5E-107 T 25-04-2017 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 Gene3D G3DSA:1.10.287.610 100 152 2.6E-26 T 25-04-2017 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 25-04-2017 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 Gene3D G3DSA:3.40.50.10490 23 99 9.4E-67 T 25-04-2017 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 Gene3D G3DSA:3.40.50.10490 158 235 9.4E-67 T 25-04-2017 A4U88_RS19275 391a06c456aa96eafa1987a853c26765 241 Pfam PF00318 Ribosomal protein S2 9 224 1.0E-92 T 25-04-2017 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Gene3D G3DSA:2.40.50.140 620 692 4.8E-27 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 9.2E-14 T 25-04-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 1.6E-5 T 25-04-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Gene3D G3DSA:3.30.230.70 5 225 9.8E-83 T 25-04-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Gene3D G3DSA:3.30.230.70 314 542 4.0E-89 T 25-04-2017 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF50249 608 692 1.34E-22 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Gene3D G3DSA:3.30.1370.10 552 619 1.1E-25 T 25-04-2017 IPR004088 K Homology domain, type 1 GO:0003723 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SMART SM00322 552 617 1.9E-11 T 25-04-2017 IPR004087 K Homology domain GO:0003676 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF00575 S1 RNA binding domain 619 690 1.0E-22 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 9.2E-19 T 25-04-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 2.4E-21 T 25-04-2017 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF54211 5 144 3.59E-49 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 25-04-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.408 T 25-04-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF54211 300 492 6.58E-47 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF54791 554 622 2.4E-17 T 25-04-2017 IPR004088 K Homology domain, type 1 GO:0003723 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SMART SM00316 620 690 1.5E-27 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF55666 450 548 3.09E-28 T 25-04-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 6.2E-26 T 25-04-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Gene3D G3DSA:1.10.10.400 226 313 4.1E-26 T 25-04-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 PIRSF PIRSF005499 2 704 2.5E-301 T 25-04-2017 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF46915 238 320 4.18E-20 T 25-04-2017 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 Pfam PF00013 KH domain 557 613 2.4E-8 T 25-04-2017 IPR004088 K Homology domain, type 1 GO:0003723 A4U88_RS01985 971a243f6baeafe3e10bb771d065cda0 705 SUPERFAMILY SSF55666 145 235 1.54E-30 T 25-04-2017 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 SUPERFAMILY SSF46626 303 417 7.45E-17 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 Gene3D G3DSA:1.10.760.10 189 297 2.0E-10 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 Gene3D G3DSA:1.10.760.10 44 147 3.2E-14 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 Pfam PF00034 Cytochrome c 48 147 1.1E-5 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 324 405 1.3E-8 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 SUPERFAMILY SSF46626 183 305 9.44E-14 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 Gene3D G3DSA:1.10.760.10 325 428 1.5E-14 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 PIRSF PIRSF000018 15 432 8.9E-140 T 25-04-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 A4U88_RS12140 c2d90238d77265865d44ede40e8704ec 432 SUPERFAMILY SSF46626 40 166 6.37E-21 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10985 1d2ba2b58897becdbca6adee8b5a1002 209 Pfam PF04205 FMN-binding domain 100 187 4.5E-18 T 25-04-2017 IPR007329 FMN-binding GO:0010181|GO:0016020 A4U88_RS10985 1d2ba2b58897becdbca6adee8b5a1002 209 PIRSF PIRSF006091 1 202 1.1E-73 T 25-04-2017 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 A4U88_RS10985 1d2ba2b58897becdbca6adee8b5a1002 209 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 2 194 26.887 T 25-04-2017 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 A4U88_RS10985 1d2ba2b58897becdbca6adee8b5a1002 209 SMART SM00900 100 192 1.0E-34 T 25-04-2017 IPR007329 FMN-binding GO:0010181|GO:0016020 A4U88_RS10985 1d2ba2b58897becdbca6adee8b5a1002 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 10 193 6.1E-67 T 25-04-2017 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Pfam PF02911 Formyl transferase, C-terminal domain 203 282 3.8E-17 T 25-04-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 64.738 T 25-04-2017 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Gene3D G3DSA:3.90.25.10 570 641 3.1E-44 T 25-04-2017 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 SUPERFAMILY SSF53328 1 202 1.31E-57 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 1.3E-42 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Pfam PF00551 Formyl transferase 28 175 1.7E-25 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 SUPERFAMILY SSF51735 317 651 1.93E-71 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Gene3D G3DSA:3.40.50.170 1 200 6.7E-51 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 SUPERFAMILY SSF50486 205 304 5.18E-23 T 25-04-2017 IPR011034 Formyl transferase, C-terminal-like GO:0003824 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Gene3D G3DSA:3.40.50.720 305 553 5.3E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 PIRSF PIRSF036506 1 659 0.0 T 25-04-2017 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00520+2.1.2.13+1.1.1.305|KEGG: 00650+1.1.1.30 A4U88_RS10545 09df1b190a36844f7d7464b86462811f 660 Gene3D G3DSA:3.10.25.10 204 304 3.6E-22 T 25-04-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 Pfam PF14718 Soluble lytic murein transglycosylase L domain 406 469 6.5E-24 T 25-04-2017 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 Gene3D G3DSA:1.10.1240.20 404 469 3.0E-28 T 25-04-2017 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 SUPERFAMILY SSF48435 26 474 5.89E-134 T 25-04-2017 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 Gene3D G3DSA:1.25.20.10 27 386 2.0E-118 T 25-04-2017 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 498 526 - T 25-04-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 Gene3D G3DSA:1.10.530.10 473 636 6.9E-51 T 25-04-2017 A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 SUPERFAMILY SSF53955 476 635 4.38E-50 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS02960 fdf8171051a64e5deca9ece40ad4f5ea 642 Pfam PF01464 Transglycosylase SLT domain 481 591 5.3E-33 T 25-04-2017 IPR008258 Transglycosylase SLT domain 1 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 Gene3D G3DSA:1.10.645.10 214 577 2.9E-45 T 25-04-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 SUPERFAMILY SSF56762 223 598 2.62E-119 T 25-04-2017 IPR029014 NiFe hydrogenase-like Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 209 598 42.075 T 25-04-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 47 174 1.0E-45 T 25-04-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 327 598 9.9E-103 T 25-04-2017 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 23 183 25.474 T 25-04-2017 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 48 176 3.9E-42 T 25-04-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 103 158 2.0E-25 T 25-04-2017 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 213 598 1.7E-175 T 25-04-2017 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 14 598 72.779 T 25-04-2017 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 SUPERFAMILY SSF143243 23 227 1.83E-60 T 25-04-2017 A4U88_RS16860 b9ccb61b89b2f02eba7b4748544d167a 598 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 250 261 - T 25-04-2017 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Gene3D G3DSA:1.10.490.10 2 141 1.2E-54 T 25-04-2017 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 3.2E-5 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 3.2E-5 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 3.2E-5 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 3.2E-5 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Gene3D G3DSA:3.40.50.80 259 394 4.8E-34 T 25-04-2017 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Gene3D G3DSA:2.40.30.10 149 254 1.5E-32 T 25-04-2017 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 57.617 T 25-04-2017 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Pfam PF00042 Globin 7 102 1.1E-13 T 25-04-2017 IPR000971 Globin GO:0019825|GO:0020037 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 SUPERFAMILY SSF46458 1 142 4.82E-38 T 25-04-2017 IPR009050 Globin-like A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 SUPERFAMILY SSF52343 255 394 3.8E-38 T 25-04-2017 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 SUPERFAMILY SSF63380 148 253 1.34E-28 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Pfam PF00970 Oxidoreductase FAD-binding domain 161 252 1.4E-10 T 25-04-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 1.6E-15 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 5.7E-5 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 5.7E-5 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 5.7E-5 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS18495 60b66056a5fedc8118b9ffc8798eef29 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 366 5.7E-5 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS12865 a2f1b07330bba7cf57ca4548e4067202 99 Pfam PF03869 Arc-like DNA binding domain 8 46 9.3E-6 T 25-04-2017 IPR005569 Arc-like DNA binding domain GO:0003677 A4U88_RS12865 a2f1b07330bba7cf57ca4548e4067202 99 SUPERFAMILY SSF47598 1 45 2.3E-9 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS12865 a2f1b07330bba7cf57ca4548e4067202 99 Gene3D G3DSA:1.10.1220.10 2 51 9.2E-10 T 25-04-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 150 175 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 27 49 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 54 78 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 89 110 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 241 260 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 115 135 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 PRINTS PR01277 Nucleoside-specific channel-forming protein Tsx signature 182 205 3.7E-95 T 25-04-2017 IPR003055 Nucleoside-specific channel-forming protein, Tsx GO:0005337|GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 SUPERFAMILY SSF111364 31 293 3.14E-87 T 25-04-2017 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 31 293 3.9E-85 T 25-04-2017 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 A4U88_RS10100 9ea79cf2425bf2457f7e7cb450d74c25 293 Gene3D G3DSA:2.40.230.20 25 293 4.0E-101 T 25-04-2017 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 A4U88_RS03735 cf1663a94eb68c47c7210216bcc212dd 459 Gene3D G3DSA:1.20.1250.20 204 384 1.8E-22 T 25-04-2017 A4U88_RS03735 cf1663a94eb68c47c7210216bcc212dd 459 Pfam PF07690 Major Facilitator Superfamily 13 286 3.8E-18 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS03735 cf1663a94eb68c47c7210216bcc212dd 459 Gene3D G3DSA:1.20.1250.20 8 185 2.6E-14 T 25-04-2017 A4U88_RS03735 cf1663a94eb68c47c7210216bcc212dd 459 SUPERFAMILY SSF103473 8 374 1.31E-41 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13195 c391566b6a4d9d362fbf8c3585507d30 545 SUPERFAMILY SSF53850 37 527 7.6E-140 T 25-04-2017 A4U88_RS13195 c391566b6a4d9d362fbf8c3585507d30 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 2.6E-85 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS13195 c391566b6a4d9d362fbf8c3585507d30 545 PIRSF PIRSF002741 1 545 5.9E-106 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS13195 c391566b6a4d9d362fbf8c3585507d30 545 Gene3D G3DSA:3.40.190.10 160 311 5.3E-51 T 25-04-2017 A4U88_RS13195 c391566b6a4d9d362fbf8c3585507d30 545 Gene3D G3DSA:3.10.105.10 312 513 6.3E-61 T 25-04-2017 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.5E-12 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 Gene3D G3DSA:1.10.10.10 1 81 1.5E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 SUPERFAMILY SSF46785 4 113 2.57E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 SUPERFAMILY SSF53850 90 292 3.5E-41 T 25-04-2017 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 Gene3D G3DSA:3.40.190.10 91 179 6.0E-24 T 25-04-2017 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 Gene3D G3DSA:3.40.190.10 180 260 4.3E-25 T 25-04-2017 A4U88_RS14195 d43a5bf716fae2c2b8b91375688285e6 317 Pfam PF03466 LysR substrate binding domain 90 292 1.4E-42 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1294 0.0 T 25-04-2017 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF55326 220 427 4.88E-66 T 25-04-2017 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SMART SM01211 1040 1295 1.5E-159 T 25-04-2017 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF52317 1036 1294 1.57E-99 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Gene3D G3DSA:3.40.50.880 1041 1264 2.5E-12 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF56042 430 614 3.14E-53 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF55326 618 815 6.54E-68 T 25-04-2017 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 8.2E-106 T 25-04-2017 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF56042 822 1034 2.39E-58 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF109736 154 219 1.01E-21 T 25-04-2017 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1296 21.725 T 25-04-2017 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 587 1.5E-27 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 834 966 2.3E-14 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Gene3D G3DSA:3.30.1330.10 645 809 9.9E-16 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 Gene3D G3DSA:3.30.1330.10 210 420 7.2E-40 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS18570 fa005935b28c18a99f2aaf68d690e10a 1296 SUPERFAMILY SSF82697 1 151 4.5E-53 T 25-04-2017 A4U88_RS15270 ab4f8478979667fcd5aecb5562faf7d4 252 SUPERFAMILY SSF47240 6 246 4.87E-80 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS15270 ab4f8478979667fcd5aecb5562faf7d4 252 Gene3D G3DSA:1.20.1260.10 8 252 6.2E-93 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS15270 ab4f8478979667fcd5aecb5562faf7d4 252 PIRSF PIRSF037834 1 252 2.2E-93 T 25-04-2017 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 A4U88_RS15270 ab4f8478979667fcd5aecb5562faf7d4 252 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 15 252 3.6E-92 T 25-04-2017 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 A4U88_RS15270 ab4f8478979667fcd5aecb5562faf7d4 252 Pfam PF05138 Phenylacetic acid catabolic protein 5 252 1.7E-93 T 25-04-2017 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 A4U88_RS22935 c02eba33038eedb052873e42590fd94e 273 Pfam PF04962 KduI/IolB family 6 264 1.3E-110 T 25-04-2017 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 A4U88_RS22935 c02eba33038eedb052873e42590fd94e 273 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 18 264 5.7E-101 T 25-04-2017 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 A4U88_RS22935 c02eba33038eedb052873e42590fd94e 273 Gene3D G3DSA:2.60.120.10 122 266 8.5E-69 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS22935 c02eba33038eedb052873e42590fd94e 273 PIRSF PIRSF036628 1 269 4.1E-110 T 25-04-2017 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 A4U88_RS22935 c02eba33038eedb052873e42590fd94e 273 Gene3D G3DSA:2.60.120.10 16 121 6.0E-45 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS22935 c02eba33038eedb052873e42590fd94e 273 SUPERFAMILY SSF51182 17 253 4.89E-68 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 SUPERFAMILY SSF53649 5 79 4.58E-75 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 SUPERFAMILY SSF53649 312 510 4.58E-75 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 512 49.975 T 25-04-2017 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 Gene3D G3DSA:3.40.1450.10 80 311 1.2E-94 T 25-04-2017 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 Pfam PF01676 Metalloenzyme superfamily 6 500 1.7E-81 T 25-04-2017 IPR006124 Metalloenzyme GO:0003824|GO:0046872 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 PIRSF PIRSF001492 1 514 2.4E-201 T 25-04-2017 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 511 5.6E-233 T 25-04-2017 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 Gene3D G3DSA:3.40.720.10 316 510 3.1E-88 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 Gene3D G3DSA:3.40.720.10 5 79 3.1E-88 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 SUPERFAMILY SSF64158 79 311 9.68E-84 T 25-04-2017 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS23685 f2697995fdf33e2f4379204d0e148b35 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 300 2.7E-81 T 25-04-2017 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS14115 2f2fa59018035b6d521fe3f821371a0a 377 Gene3D G3DSA:3.10.560.10 161 243 1.6E-29 T 25-04-2017 A4U88_RS14115 2f2fa59018035b6d521fe3f821371a0a 377 Gene3D G3DSA:3.10.560.10 244 343 2.8E-30 T 25-04-2017 A4U88_RS14115 2f2fa59018035b6d521fe3f821371a0a 377 Gene3D G3DSA:1.20.5.70 345 377 9.1E-19 T 25-04-2017 A4U88_RS14115 2f2fa59018035b6d521fe3f821371a0a 377 Gene3D G3DSA:3.30.1950.10 89 160 1.2E-32 T 25-04-2017 A4U88_RS14115 2f2fa59018035b6d521fe3f821371a0a 377 Pfam PF10531 SLBB domain 173 218 5.3E-8 T 25-04-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS14115 2f2fa59018035b6d521fe3f821371a0a 377 Pfam PF02563 Polysaccharide biosynthesis/export protein 81 165 6.4E-27 T 25-04-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 98 124 7.8E-30 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 201 224 7.8E-30 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 300 319 7.8E-30 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 151 172 7.8E-30 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 PRINTS PR00447 Natural resistance-associated macrophage protein signature 126 145 7.8E-30 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 21 378 3.0E-97 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 3 410 37.19 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS17460 ea138ac5b15e8e44fc716df04f2ec737 411 Pfam PF01566 Natural resistance-associated macrophage protein 39 384 6.0E-121 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS06240 2a37b9027e75281e4e3d71026eebd978 322 Gene3D G3DSA:1.20.1510.10 24 231 2.4E-48 T 25-04-2017 IPR027469 Cation efflux protein transmembrane domain A4U88_RS06240 2a37b9027e75281e4e3d71026eebd978 322 SUPERFAMILY SSF161111 22 232 3.14E-50 T 25-04-2017 A4U88_RS06240 2a37b9027e75281e4e3d71026eebd978 322 Pfam PF01545 Cation efflux family 30 231 8.9E-40 T 25-04-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS06240 2a37b9027e75281e4e3d71026eebd978 322 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 24 306 5.2E-62 T 25-04-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 15 84 1.1E-31 T 25-04-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 SUPERFAMILY SSF55200 90 182 2.49E-32 T 25-04-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 15 182 2.3E-74 T 25-04-2017 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 91 180 7.6E-36 T 25-04-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 ProSitePatterns PS00938 Initiation factor 3 signature. 66 79 - T 25-04-2017 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 9 182 30.596 T 25-04-2017 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 SUPERFAMILY SSF54364 13 86 2.48E-29 T 25-04-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 Gene3D G3DSA:3.10.20.80 13 86 6.6E-36 T 25-04-2017 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS10485 29db0ceaf213ce79aa98264fea92b760 183 Gene3D G3DSA:3.30.110.10 87 182 3.9E-38 T 25-04-2017 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 A4U88_RS23870 0edb91c3de07147235e7c5217e81c42e 231 Pfam PF00588 SpoU rRNA Methylase family 20 159 1.0E-34 T 25-04-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 A4U88_RS23870 0edb91c3de07147235e7c5217e81c42e 231 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 36.782 T 25-04-2017 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 A4U88_RS23870 0edb91c3de07147235e7c5217e81c42e 231 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 217 9.0E-24 T 25-04-2017 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 A4U88_RS23870 0edb91c3de07147235e7c5217e81c42e 231 Gene3D G3DSA:3.40.1280.10 4 176 2.0E-49 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS23870 0edb91c3de07147235e7c5217e81c42e 231 SUPERFAMILY SSF75217 4 182 2.03E-49 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS01210 62ff91052ef253db131905272e292a15 66 Pfam PF02597 ThiS family 4 66 3.8E-15 T 25-04-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 A4U88_RS01210 62ff91052ef253db131905272e292a15 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 5.8E-20 T 25-04-2017 IPR010035 ThiS, thiamine-biosynthesis A4U88_RS01210 62ff91052ef253db131905272e292a15 66 SUPERFAMILY SSF54285 1 66 1.35E-17 T 25-04-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp A4U88_RS01210 62ff91052ef253db131905272e292a15 66 Gene3D G3DSA:3.10.20.30 1 66 1.4E-23 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS00055 03e82d76483362fff4c9717ce86f1713 142 SUPERFAMILY SSF49764 29 133 7.32E-19 T 25-04-2017 IPR008978 HSP20-like chaperone A4U88_RS00055 03e82d76483362fff4c9717ce86f1713 142 Pfam PF00011 Hsp20/alpha crystallin family 38 133 5.7E-16 T 25-04-2017 IPR002068 Alpha crystallin/Hsp20 domain A4U88_RS00055 03e82d76483362fff4c9717ce86f1713 142 Gene3D G3DSA:2.60.40.790 19 133 3.3E-15 T 25-04-2017 IPR008978 HSP20-like chaperone A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 Pfam PF00266 Aminotransferase class-V 4 349 4.4E-65 T 25-04-2017 IPR000192 Aminotransferase class V domain A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 SUPERFAMILY SSF53383 3 361 2.18E-116 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 51.299 T 25-04-2017 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 Gene3D G3DSA:3.40.640.10 17 258 3.2E-104 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 4.6E-155 T 25-04-2017 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 PIRSF PIRSF000525 1 361 4.6E-149 T 25-04-2017 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 188 207 - T 25-04-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site A4U88_RS08310 15b877d76eb64cb42f4798477cc01548 361 Gene3D G3DSA:3.90.1150.10 259 360 2.3E-41 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 SMART SM00345 27 86 5.0E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 SUPERFAMILY SSF53383 120 489 1.71E-85 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 Pfam PF00155 Aminotransferase class I and II 164 460 2.4E-17 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 SUPERFAMILY SSF46785 22 90 2.4E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 86 1.8E-14 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 3.9E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 3.9E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 Gene3D G3DSA:1.10.10.10 24 90 5.4E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23045 071dcdc7df9c031474ea42138b08f519 497 Gene3D G3DSA:3.40.640.10 164 381 9.3E-56 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 Gene3D G3DSA:3.40.190.10 174 257 8.8E-7 T 25-04-2017 A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 Gene3D G3DSA:3.40.190.10 105 173 1.7E-6 T 25-04-2017 A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 SUPERFAMILY SSF53850 94 290 4.16E-22 T 25-04-2017 A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 Gene3D G3DSA:1.10.10.10 5 88 3.2E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.1E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 Pfam PF03466 LysR substrate binding domain 94 289 1.2E-19 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS17755 1c29d2dbad2799e741c54c6feaa8f7eb 313 SUPERFAMILY SSF46785 5 88 1.14E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00985 356a17621180fc30bce47b4a1f6b1f5e 543 Gene3D G3DSA:3.90.1200.10 251 296 8.3E-4 T 25-04-2017 A4U88_RS00985 356a17621180fc30bce47b4a1f6b1f5e 543 Pfam PF03109 ABC1 family 113 231 3.5E-35 T 25-04-2017 IPR004147 UbiB domain A4U88_RS00985 356a17621180fc30bce47b4a1f6b1f5e 543 SUPERFAMILY SSF56112 94 158 2.56E-48 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS00985 356a17621180fc30bce47b4a1f6b1f5e 543 SUPERFAMILY SSF56112 193 435 2.56E-48 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS00985 356a17621180fc30bce47b4a1f6b1f5e 543 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.624 T 25-04-2017 IPR010232 Probable protein kinase UbiB GO:0006744 A4U88_RS00985 356a17621180fc30bce47b4a1f6b1f5e 543 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 1.0E-180 T 25-04-2017 IPR010232 Probable protein kinase UbiB GO:0006744 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.5E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.5E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 Pfam PF13377 Periplasmic binding protein-like domain 168 320 7.2E-35 T 25-04-2017 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 Gene3D G3DSA:1.10.260.40 2 57 2.6E-26 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 SUPERFAMILY SSF47413 1 59 1.38E-18 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.5E-20 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 SUPERFAMILY SSF53822 61 321 3.93E-67 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 SMART SM00354 1 71 2.9E-30 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 Gene3D G3DSA:3.40.50.2300 58 166 3.0E-40 T 25-04-2017 A4U88_RS22580 e7af4debaf2495911644e47e20e6ff5c 326 Gene3D G3DSA:3.40.50.2300 167 321 2.1E-49 T 25-04-2017 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 SMART SM00387 28 174 1.1E-19 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 2.4E-153 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Pfam PF00204 DNA gyrase B 219 385 1.5E-39 T 25-04-2017 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 3.8E-59 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Pfam PF01751 Toprim domain 414 523 3.4E-12 T 25-04-2017 IPR006171 Toprim domain A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 SMART SM00433 35 625 2.3E-207 T 25-04-2017 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 25-04-2017 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 1.3E-23 T 25-04-2017 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Gene3D G3DSA:3.30.565.10 16 216 1.9E-77 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 SUPERFAMILY SSF56719 389 622 4.18E-77 T 25-04-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.27 T 25-04-2017 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Gene3D G3DSA:3.30.230.10 218 391 7.0E-47 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 SUPERFAMILY SSF55874 6 216 1.12E-68 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 SUPERFAMILY SSF54211 218 383 8.72E-46 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Gene3D G3DSA:3.40.50.670 399 612 6.8E-76 T 25-04-2017 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20885 34ea43376c596d7cb131e7b420c981c3 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 172 2.4E-18 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14135 835b7ac32888ef43fb99d07e34c20df2 464 Gene3D G3DSA:1.20.1250.20 34 237 4.1E-13 T 25-04-2017 A4U88_RS14135 835b7ac32888ef43fb99d07e34c20df2 464 Pfam PF07690 Major Facilitator Superfamily 46 380 2.2E-15 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS14135 835b7ac32888ef43fb99d07e34c20df2 464 Gene3D G3DSA:1.20.1250.20 255 459 1.1E-11 T 25-04-2017 A4U88_RS14135 835b7ac32888ef43fb99d07e34c20df2 464 TIGRFAM TIGR00886 2A0108: nitrite transporter 37 419 1.9E-109 T 25-04-2017 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 A4U88_RS14135 835b7ac32888ef43fb99d07e34c20df2 464 SUPERFAMILY SSF103473 17 463 7.46E-39 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS08135 de8148926f1af1b0fa163e4fbfe4d820 278 SUPERFAMILY SSF47090 201 274 2.35E-16 T 25-04-2017 IPR002477 Peptidoglycan binding-like A4U88_RS08135 de8148926f1af1b0fa163e4fbfe4d820 278 SUPERFAMILY SSF55846 38 195 2.36E-53 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS08135 de8148926f1af1b0fa163e4fbfe4d820 278 Gene3D G3DSA:3.40.80.10 36 198 4.3E-59 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS08135 de8148926f1af1b0fa163e4fbfe4d820 278 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 43 180 1.5E-20 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS08135 de8148926f1af1b0fa163e4fbfe4d820 278 SMART SM00644 33 179 8.9E-29 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Gene3D G3DSA:3.20.20.70 437 779 1.9E-100 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 SUPERFAMILY SSF51395 433 1189 2.24E-250 T 25-04-2017 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 SUPERFAMILY SSF69336 1211 1465 5.1E-89 T 25-04-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Gene3D G3DSA:2.160.20.60 1210 1465 2.3E-98 T 25-04-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Pfam PF01493 GXGXG motif 1236 1419 3.6E-75 T 25-04-2017 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Gene3D G3DSA:3.20.20.70 810 1194 1.2E-163 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 SUPERFAMILY SSF56235 12 428 1.87E-150 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Gene3D G3DSA:3.60.20.10 12 432 1.4E-172 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Pfam PF01645 Conserved region in glutamate synthase 792 1155 1.1E-156 T 25-04-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Pfam PF04898 Glutamate synthase central domain 456 736 5.7E-105 T 25-04-2017 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 A4U88_RS21280 d56b79f08937afc16e1b6c9841c0daad 1486 Pfam PF00310 Glutamine amidotransferases class-II 12 424 6.9E-176 T 25-04-2017 IPR017932 Glutamine amidotransferase type 2 domain A4U88_RS01745 b673f4555ee1360dc0bfcd09f5564eb9 105 Pfam PF00436 Single-strand binding protein family 4 83 5.3E-14 T 25-04-2017 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 A4U88_RS01745 b673f4555ee1360dc0bfcd09f5564eb9 105 PIRSF PIRSF003135 1 102 2.5E-50 T 25-04-2017 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 A4U88_RS01745 b673f4555ee1360dc0bfcd09f5564eb9 105 Hamap MF_00720 Primosomal replication protein n [priB]. 2 101 30.401 T 25-04-2017 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 A4U88_RS01745 b673f4555ee1360dc0bfcd09f5564eb9 105 SUPERFAMILY SSF50249 3 104 1.44E-31 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01745 b673f4555ee1360dc0bfcd09f5564eb9 105 Gene3D G3DSA:2.40.50.140 3 104 4.2E-44 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01745 b673f4555ee1360dc0bfcd09f5564eb9 105 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 4 100 7.4E-38 T 25-04-2017 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 432 451 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 SUPERFAMILY SSF52467 191 352 8.73E-37 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 Gene3D G3DSA:3.40.50.970 11 182 4.6E-58 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 Gene3D G3DSA:3.40.50.970 370 555 3.5E-56 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 SUPERFAMILY SSF52518 372 553 3.25E-53 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 180 1.6E-47 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 Gene3D G3DSA:3.40.50.1220 193 340 6.1E-37 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 540 2.7E-39 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 331 3.2E-28 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 13 552 2.9E-257 T 25-04-2017 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 A4U88_RS17540 837a68c74843dd81d3f79e99447ccfe4 561 SUPERFAMILY SSF52518 7 184 6.38E-47 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12810 2c385fda0d93a1c8f0e6c4a62e584c44 436 Gene3D G3DSA:1.20.1250.20 245 429 3.4E-11 T 25-04-2017 A4U88_RS12810 2c385fda0d93a1c8f0e6c4a62e584c44 436 Gene3D G3DSA:1.20.1250.20 21 229 4.8E-24 T 25-04-2017 A4U88_RS12810 2c385fda0d93a1c8f0e6c4a62e584c44 436 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS12810 2c385fda0d93a1c8f0e6c4a62e584c44 436 Pfam PF07690 Major Facilitator Superfamily 29 384 4.5E-23 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS12810 2c385fda0d93a1c8f0e6c4a62e584c44 436 SUPERFAMILY SSF103473 21 434 1.06E-55 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 9.0E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 9.0E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 9.0E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 9.3E-20 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 Gene3D G3DSA:3.40.50.2300 7 127 1.4E-18 T 25-04-2017 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 SUPERFAMILY SSF52172 7 129 7.54E-17 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 Gene3D G3DSA:1.10.10.10 147 203 3.5E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 SMART SM00421 145 202 3.1E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 SUPERFAMILY SSF46894 144 203 6.12E-19 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 SMART SM00448 4 118 2.0E-6 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS18285 a89621d410e77735a19d7958a98d1e71 210 Pfam PF00072 Response regulator receiver domain 7 115 9.9E-15 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS05680 94024c594de78379824f211f641d0e33 246 Gene3D G3DSA:1.10.3720.10 23 237 9.9E-43 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05680 94024c594de78379824f211f641d0e33 246 SUPERFAMILY SSF161098 24 223 1.03E-36 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05680 94024c594de78379824f211f641d0e33 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 132 1.8E-15 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS05680 94024c594de78379824f211f641d0e33 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 237 1.6E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 Gene3D G3DSA:3.50.50.60 365 504 2.4E-28 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 Gene3D G3DSA:3.50.50.60 76 132 2.4E-28 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 Gene3D G3DSA:3.50.50.60 200 230 2.4E-28 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 SUPERFAMILY SSF51905 601 625 5.89E-16 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 SUPERFAMILY SSF51905 306 436 5.89E-16 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 SUPERFAMILY SSF51905 76 193 5.89E-16 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18505 0a1475eb360938a8240dd68dfcb86de7 636 Pfam PF13450 NAD(P)-binding Rossmann-like domain 82 156 8.2E-13 T 25-04-2017 A4U88_RS11895 0ccecd261cb03ff1d5b888a7c5c8b151 313 Gene3D G3DSA:3.20.20.150 1 312 2.0E-71 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS11895 0ccecd261cb03ff1d5b888a7c5c8b151 313 Pfam PF07582 AP endonuclease family 2 C terminus 269 310 8.0E-10 T 25-04-2017 IPR011418 AP endonuclease, family 2, C-terminal A4U88_RS11895 0ccecd261cb03ff1d5b888a7c5c8b151 313 Pfam PF01261 Xylose isomerase-like TIM barrel 19 263 1.3E-32 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS11895 0ccecd261cb03ff1d5b888a7c5c8b151 313 SUPERFAMILY SSF51658 5 301 6.91E-44 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS11535 fbba3dea579c7d774ef72c98bb41c5cc 93 Pfam PF15940 Family of unknown function 1 92 4.8E-42 T 25-04-2017 IPR016958 Uncharacterised conserved protein UCP030798 A4U88_RS11535 fbba3dea579c7d774ef72c98bb41c5cc 93 PIRSF PIRSF030798 1 93 1.4E-23 T 25-04-2017 IPR016958 Uncharacterised conserved protein UCP030798 A4U88_RS11535 fbba3dea579c7d774ef72c98bb41c5cc 93 ProDom PD064934 YJCB MEMBRANE INNER ECS5042 21 92 6.0E-9 T 25-04-2017 IPR016958 Uncharacterised conserved protein UCP030798 A4U88_RS08345 6543e6598e4b27efed787c06e85968fc 326 SUPERFAMILY SSF52540 46 183 1.92E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08345 6543e6598e4b27efed787c06e85968fc 326 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 322 2.2E-106 T 25-04-2017 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 A4U88_RS08345 6543e6598e4b27efed787c06e85968fc 326 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 325 41.48 T 25-04-2017 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 A4U88_RS08345 6543e6598e4b27efed787c06e85968fc 326 Gene3D G3DSA:3.40.50.300 155 167 1.8E-7 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08345 6543e6598e4b27efed787c06e85968fc 326 Gene3D G3DSA:3.40.50.300 45 108 1.8E-7 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08345 6543e6598e4b27efed787c06e85968fc 326 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 14 319 1.0E-117 T 25-04-2017 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 SUPERFAMILY SSF50104 2 115 7.52E-48 T 25-04-2017 IPR008991 Translation protein SH3-like domain A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 PIRSF PIRSF002191 1 118 2.1E-50 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 Pfam PF01245 Ribosomal protein L19 3 113 7.9E-50 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.478 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 25-04-2017 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03845 761b944c5ae6c6ceae9fe53b339f6b6a 118 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 1.0E-52 T 25-04-2017 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01720 4b05a69689a93e4e41d66d222403b1ba 102 Pfam PF07338 Protein of unknown function (DUF1471) 47 102 1.3E-19 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS01720 4b05a69689a93e4e41d66d222403b1ba 102 Gene3D G3DSA:3.30.1660.10 37 102 1.4E-18 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS01720 4b05a69689a93e4e41d66d222403b1ba 102 SUPERFAMILY SSF159871 6 102 2.88E-19 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS13245 d30e85f13d589c53b54c15ce00ec6bfd 154 Pfam PF02810 SEC-C motif 136 154 1.5E-9 T 25-04-2017 IPR004027 SEC-C motif A4U88_RS13245 d30e85f13d589c53b54c15ce00ec6bfd 154 Pfam PF02810 SEC-C motif 3 19 1.1E-4 T 25-04-2017 IPR004027 SEC-C motif A4U88_RS13245 d30e85f13d589c53b54c15ce00ec6bfd 154 Gene3D G3DSA:3.10.450.50 3 154 1.3E-58 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS13245 d30e85f13d589c53b54c15ce00ec6bfd 154 SUPERFAMILY SSF103642 134 153 6.05E-7 T 25-04-2017 A4U88_RS13245 d30e85f13d589c53b54c15ce00ec6bfd 154 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 130 28.544 T 25-04-2017 IPR023006 Uncharacterised protein family UPF0225 A4U88_RS13245 d30e85f13d589c53b54c15ce00ec6bfd 154 SUPERFAMILY SSF54427 25 130 6.77E-38 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS10795 75e06a160a297e8f24ba6e08d96e8991 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 4.1E-26 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS10795 75e06a160a297e8f24ba6e08d96e8991 135 SUPERFAMILY SSF54593 1 128 1.21E-35 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS10795 75e06a160a297e8f24ba6e08d96e8991 135 Gene3D G3DSA:3.10.180.10 1 127 1.9E-47 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS10795 75e06a160a297e8f24ba6e08d96e8991 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 25-04-2017 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 A4U88_RS10795 75e06a160a297e8f24ba6e08d96e8991 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 3.1E-67 T 25-04-2017 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF55008 170 235 2.62E-19 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF81653 391 488 5.62E-24 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 ProSitePatterns PS01047 Heavy-metal-associated domain. 174 203 - T 25-04-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 321 896 1.2E-182 T 25-04-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Pfam PF00122 E1-E2 ATPase 359 580 2.6E-61 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:3.30.70.100 2 65 3.3E-13 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF81665 355 392 5.75E-10 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF81665 836 851 5.75E-10 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF81665 489 584 5.75E-10 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF55008 3 67 1.23E-10 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:3.40.50.1000 563 603 4.5E-56 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:3.40.50.1000 715 855 4.5E-56 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Pfam PF00702 haloacid dehalogenase-like hydrolase 587 801 4.5E-50 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:3.30.70.100 71 132 2.1E-15 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:3.30.70.100 170 234 2.3E-24 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 592 598 - T 25-04-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:3.40.1110.10 604 714 8.3E-20 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 590 604 4.6E-25 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 712 723 4.6E-25 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 734 744 4.6E-25 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 787 806 4.6E-25 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 810 822 4.6E-25 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 438 452 4.6E-25 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Pfam PF00403 Heavy-metal-associated domain 73 128 5.6E-8 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Pfam PF00403 Heavy-metal-associated domain 174 228 7.2E-16 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Pfam PF00403 Heavy-metal-associated domain 9 61 1.2E-7 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 302 896 2.2E-187 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 ProSitePatterns PS01229 Hypothetical cof family signature 2. 787 809 - T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 25-04-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00943 Copper-transporting ATPase signature 573 588 2.4E-8 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00943 Copper-transporting ATPase signature 764 781 2.4E-8 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00943 Copper-transporting ATPase signature 860 874 2.4E-8 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00943 Copper-transporting ATPase signature 306 325 2.4E-8 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00943 Copper-transporting ATPase signature 511 525 2.4E-8 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 PRINTS PR00943 Copper-transporting ATPase signature 378 396 2.4E-8 T 25-04-2017 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 Gene3D G3DSA:2.70.150.10 321 488 1.1E-25 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF55008 71 131 1.57E-11 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 360 866 2.9E-86 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF56784 645 893 2.66E-60 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05295 96459875bb84dc269c083226568a2e38 903 SUPERFAMILY SSF56784 588 608 2.66E-60 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS23810 7c76fc2bf0576d58d644a0db5d503303 152 Gene3D G3DSA:2.70.40.10 5 151 1.3E-54 T 25-04-2017 IPR029054 dUTPase-like A4U88_RS23810 7c76fc2bf0576d58d644a0db5d503303 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.508 T 25-04-2017 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 A4U88_RS23810 7c76fc2bf0576d58d644a0db5d503303 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 11 151 5.9E-50 T 25-04-2017 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|Reactome: R-HSA-500753 A4U88_RS23810 7c76fc2bf0576d58d644a0db5d503303 152 Pfam PF00692 dUTPase 18 150 3.8E-44 T 25-04-2017 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 A4U88_RS23810 7c76fc2bf0576d58d644a0db5d503303 152 SUPERFAMILY SSF51283 1 151 2.22E-56 T 25-04-2017 IPR029054 dUTPase-like A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 SUPERFAMILY SSF51430 3 267 2.23E-86 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 42 59 - T 25-04-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 124 141 - T 25-04-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 Gene3D G3DSA:3.20.20.100 5 271 2.9E-100 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 PRINTS PR00069 Aldo-keto reductase signature 38 62 3.6E-47 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 PRINTS PR00069 Aldo-keto reductase signature 92 110 3.6E-47 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 PRINTS PR00069 Aldo-keto reductase signature 197 221 3.6E-47 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 PRINTS PR00069 Aldo-keto reductase signature 158 187 3.6E-47 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 PRINTS PR00069 Aldo-keto reductase signature 124 141 3.6E-47 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 230 245 - T 25-04-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 A4U88_RS20810 78119ab50d7a935febf56305ffafb121 274 Pfam PF00248 Aldo/keto reductase family 19 261 4.1E-44 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 2.9E-52 T 25-04-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 25-04-2017 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 Gene3D G3DSA:3.40.50.1770 202 371 2.0E-48 T 25-04-2017 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 Gene3D G3DSA:3.40.50.1770 1 170 3.2E-70 T 25-04-2017 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 426 508 5.0E-36 T 25-04-2017 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 SUPERFAMILY SSF51735 137 317 8.95E-38 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 509 6.6E-292 T 25-04-2017 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 Gene3D G3DSA:3.50.50.60 171 201 4.0E-5 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 25-04-2017 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 SUPERFAMILY SSF52283 1 168 1.62E-57 T 25-04-2017 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 1.3E-75 T 25-04-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 SMART SM01003 4 137 1.7E-76 T 25-04-2017 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 PIRSF PIRSF000203 1 508 3.1E-279 T 25-04-2017 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0015992|GO:0055114 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 A4U88_RS12515 e7ea4f5824d3250988e2398fd2a18c5b 509 SMART SM01002 146 311 4.9E-86 T 25-04-2017 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain A4U88_RS07045 e9237e82c83004093c7b378f3cb97d8b 189 SUPERFAMILY SSF47413 10 78 4.79E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07045 e9237e82c83004093c7b378f3cb97d8b 189 Pfam PF01381 Helix-turn-helix 16 68 5.5E-14 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS07045 e9237e82c83004093c7b378f3cb97d8b 189 Gene3D G3DSA:1.10.260.40 10 82 5.5E-21 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07045 e9237e82c83004093c7b378f3cb97d8b 189 SUPERFAMILY SSF51182 64 189 1.02E-19 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS07045 e9237e82c83004093c7b378f3cb97d8b 189 SMART SM00530 15 70 1.5E-14 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS07045 e9237e82c83004093c7b378f3cb97d8b 189 Gene3D G3DSA:2.60.120.10 84 188 4.6E-14 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS13880 ea78feed798acc9fe09d86896fd62d44 79 ProDom PD060536 YECJ YPO1738 1 79 1.0E-33 T 25-04-2017 IPR020262 Uncharacterised protein family YecJ A4U88_RS13880 ea78feed798acc9fe09d86896fd62d44 79 Pfam PF10964 Protein of unknown function (DUF2766) 1 79 3.6E-48 T 25-04-2017 IPR020262 Uncharacterised protein family YecJ A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 SMART SM00861 319 484 1.7E-65 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Gene3D G3DSA:3.40.50.970 335 495 5.1E-34 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 2.7E-38 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 25-04-2017 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 2.1E-118 T 25-04-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 620 46.3 T 25-04-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Gene3D G3DSA:3.40.50.970 242 334 1.9E-74 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Gene3D G3DSA:3.40.50.970 26 201 1.9E-74 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 SUPERFAMILY SSF52518 243 381 4.29E-76 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 SUPERFAMILY SSF52518 9 199 4.29E-76 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 SUPERFAMILY SSF52922 492 619 1.96E-32 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 SUPERFAMILY SSF52518 318 504 1.27E-57 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 620 0.0 T 25-04-2017 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Gene3D G3DSA:3.40.50.920 496 619 1.2E-35 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS04850 f4cb0e57e4296808c95f2f2fe023a88a 621 Pfam PF02780 Transketolase, C-terminal domain 495 611 2.3E-27 T 25-04-2017 IPR033248 Transketolase, C-terminal domain A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 Pfam PF02556 Preprotein translocase subunit SecB 5 144 3.8E-58 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 6 146 4.0E-69 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 Gene3D G3DSA:3.10.420.10 2 149 1.5E-64 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.903 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 SUPERFAMILY SSF54611 3 141 2.01E-53 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 7.2E-42 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 7.2E-42 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 7.2E-42 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS23670 8523d6fd64550b42a78617816045771f 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 7.2E-42 T 25-04-2017 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 Hamap MF_01201 Alanine racemase. 2 356 32.352 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 248 263 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 61 79 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 338 351 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 286 303 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 155 166 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 27 43 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 265 280 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 190 217 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 PRINTS PR00992 Alanine racemase signature 121 133 2.6E-69 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 Pfam PF00842 Alanine racemase, C-terminal domain 232 353 8.9E-35 T 25-04-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 25-04-2017 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 SMART SM01005 232 356 6.0E-60 T 25-04-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 Pfam PF01168 Alanine racemase, N-terminal domain 10 217 1.5E-67 T 25-04-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 TIGRFAM TIGR00492 alr: alanine racemase 4 353 3.8E-115 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 Gene3D G3DSA:3.20.20.10 11 210 6.1E-67 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 SUPERFAMILY SSF51419 10 233 2.36E-64 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 Gene3D G3DSA:2.40.37.10 211 353 1.6E-49 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS13415 5dfcd07c3492624bba6e3234f60d84e9 357 SUPERFAMILY SSF50621 227 353 1.15E-41 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS15525 bca6f09475169a2d209d18ab12d54acd 386 SUPERFAMILY SSF141571 36 194 1.26E-20 T 25-04-2017 A4U88_RS15525 bca6f09475169a2d209d18ab12d54acd 386 Pfam PF13599 Pentapeptide repeats (9 copies) 242 322 2.0E-10 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS15525 bca6f09475169a2d209d18ab12d54acd 386 Pfam PF13599 Pentapeptide repeats (9 copies) 42 109 1.7E-9 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS15525 bca6f09475169a2d209d18ab12d54acd 386 SUPERFAMILY SSF141571 177 350 1.2E-25 T 25-04-2017 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 15 537 54.812 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 490 5.6E-210 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 2.2E-282 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 SUPERFAMILY SSF68923 8 226 7.5E-91 T 25-04-2017 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 Gene3D G3DSA:3.40.449.10 21 226 4.3E-88 T 25-04-2017 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 25-04-2017 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 Gene3D G3DSA:3.90.228.20 227 289 4.8E-120 T 25-04-2017 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 Gene3D G3DSA:3.90.228.20 350 538 4.8E-120 T 25-04-2017 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 SUPERFAMILY SSF53795 228 539 3.11E-127 T 25-04-2017 A4U88_RS22710 b7f38ef68677618eb08785566c5538bf 539 PIRSF PIRSF006294 3 539 2.4E-227 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS21875 1a901b953818616509c9eb5600ad6286 177 Gene3D G3DSA:1.25.40.10 66 150 5.1E-16 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS21875 1a901b953818616509c9eb5600ad6286 177 SUPERFAMILY SSF48452 65 160 2.2E-17 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS21875 1a901b953818616509c9eb5600ad6286 177 Pfam PF13431 Tetratricopeptide repeat 115 148 3.2E-5 T 25-04-2017 A4U88_RS21700 4d600d1ccab667ec4caef01001f786a1 293 SUPERFAMILY SSF53335 43 291 1.79E-44 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS21700 4d600d1ccab667ec4caef01001f786a1 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 2.6E-119 T 25-04-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 A4U88_RS21700 4d600d1ccab667ec4caef01001f786a1 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 33.279 T 25-04-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 A4U88_RS21700 4d600d1ccab667ec4caef01001f786a1 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 1.1E-102 T 25-04-2017 A4U88_RS21700 4d600d1ccab667ec4caef01001f786a1 293 Gene3D G3DSA:3.40.50.150 98 286 1.1E-40 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS21700 4d600d1ccab667ec4caef01001f786a1 293 PIRSF PIRSF000401 1 293 3.4E-93 T 25-04-2017 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.979 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 Gene3D G3DSA:3.90.226.10 16 205 1.9E-92 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 1.1E-110 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 SUPERFAMILY SSF52096 23 206 7.46E-77 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 25-04-2017 IPR033135 ClpP, histidine active site A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 Pfam PF00574 Clp protease 25 205 4.9E-91 T 25-04-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 7.4E-54 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 7.4E-54 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 7.4E-54 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 7.4E-54 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 7.4E-54 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS04950 789ff64118d162c6e1276f4db967ad94 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 25-04-2017 IPR018215 ClpP, Ser active site A4U88_RS11840 a03deafa8b69807cd1f8c56b79bffff6 142 SUPERFAMILY SSF52402 4 136 5.02E-10 T 25-04-2017 A4U88_RS11840 a03deafa8b69807cd1f8c56b79bffff6 142 Gene3D G3DSA:3.40.50.620 4 136 6.6E-10 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS22245 7339761a27671444651417b9135436bb 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 9.9E-141 T 25-04-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 25-04-2017 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 25-04-2017 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 SUPERFAMILY SSF103491 16 424 1.02E-133 T 25-04-2017 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 Gene3D G3DSA:1.10.3370.10 17 437 2.8E-167 T 25-04-2017 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 Pfam PF00344 SecY translocase 76 417 7.3E-120 T 25-04-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.938 T 25-04-2017 IPR026593 Protein translocase subunit SecY A4U88_RS22245 7339761a27671444651417b9135436bb 443 PIRSF PIRSF004557 11 441 1.6E-123 T 25-04-2017 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 1.7E-98 T 25-04-2017 A4U88_RS22245 7339761a27671444651417b9135436bb 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 1.7E-98 T 25-04-2017 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 25-04-2017 IPR033694 Pyroglutamyl peptidase I, Cys active site A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 Pfam PF01470 Pyroglutamyl peptidase 3 201 4.4E-72 T 25-04-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 201 37.508 T 25-04-2017 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 Gene3D G3DSA:3.40.630.20 3 207 6.4E-64 T 25-04-2017 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 3 212 1.1E-75 T 25-04-2017 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 SUPERFAMILY SSF53182 1 212 6.8E-69 T 25-04-2017 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 6.2E-41 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 6.2E-41 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 6.2E-41 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 6.2E-41 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 162 174 6.2E-41 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 25-04-2017 IPR033693 Pyroglutamyl peptidase I, Glu active site A4U88_RS14590 256594d4fbce0f63d39f6b485d15070c 215 PIRSF PIRSF015592 1 213 1.3E-77 T 25-04-2017 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 A4U88_RS09330 a5f6d20a449167a19d6567d575f87c01 395 SUPERFAMILY SSF111369 67 304 6.28E-69 T 25-04-2017 A4U88_RS09330 a5f6d20a449167a19d6567d575f87c01 395 Gene3D G3DSA:2.40.50.100 185 217 2.2E-23 T 25-04-2017 A4U88_RS09330 a5f6d20a449167a19d6567d575f87c01 395 Gene3D G3DSA:2.40.50.100 77 110 2.2E-23 T 25-04-2017 A4U88_RS09330 a5f6d20a449167a19d6567d575f87c01 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 52 381 7.9E-83 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS09330 a5f6d20a449167a19d6567d575f87c01 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 76 300 1.9E-19 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS04940 c529c2f521f51b03a2a8df2fb4472e43 104 PIRSF PIRSF003113 1 99 1.3E-30 T 25-04-2017 IPR002634 BolA protein A4U88_RS04940 c529c2f521f51b03a2a8df2fb4472e43 104 SUPERFAMILY SSF82657 1 88 5.23E-29 T 25-04-2017 IPR002634 BolA protein A4U88_RS04940 c529c2f521f51b03a2a8df2fb4472e43 104 Pfam PF01722 BolA-like protein 10 83 1.7E-28 T 25-04-2017 IPR002634 BolA protein A4U88_RS04940 c529c2f521f51b03a2a8df2fb4472e43 104 Gene3D G3DSA:3.30.300.90 1 100 1.1E-30 T 25-04-2017 IPR002634 BolA protein A4U88_RS16125 ee0ff8e98423c3ae3c9cada049069fad 249 SUPERFAMILY SSF53448 2 103 2.2E-21 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS16125 ee0ff8e98423c3ae3c9cada049069fad 249 Pfam PF00535 Glycosyl transferase family 2 6 103 6.6E-15 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS16125 ee0ff8e98423c3ae3c9cada049069fad 249 Gene3D G3DSA:3.90.550.10 3 99 3.1E-14 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 PIRSF PIRSF015601 2 242 2.8E-51 T 25-04-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 Pfam PF04452 RNA methyltransferase 20 236 8.2E-71 T 25-04-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 SUPERFAMILY SSF88697 2 67 3.48E-16 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 Gene3D G3DSA:2.40.240.20 1 68 2.0E-26 T 25-04-2017 A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 5.0E-86 T 25-04-2017 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 SUPERFAMILY SSF75217 75 242 6.28E-52 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS20545 7971cf718c61639d32981d4bbf5e0970 243 Gene3D G3DSA:3.40.1280.10 75 242 5.7E-59 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS00115 9b5714eef57d55f18b19c8a1eacd1a6f 150 SUPERFAMILY SSF55729 2 129 5.23E-27 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS00115 9b5714eef57d55f18b19c8a1eacd1a6f 150 Gene3D G3DSA:3.40.630.30 2 130 9.3E-26 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS00115 9b5714eef57d55f18b19c8a1eacd1a6f 150 Pfam PF13673 Acetyltransferase (GNAT) domain 46 129 8.7E-19 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 554 806 2.2E-99 T 25-04-2017 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 36 277 6.6E-95 T 25-04-2017 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 SUPERFAMILY SSF81593 816 944 1.18E-33 T 25-04-2017 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Gene3D G3DSA:3.30.460.10 114 286 4.3E-62 T 25-04-2017 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Gene3D G3DSA:3.30.460.10 640 813 9.5E-62 T 25-04-2017 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 SUPERFAMILY SSF81301 22 287 3.68E-90 T 25-04-2017 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 SUPERFAMILY SSF81301 526 814 1.7E-88 T 25-04-2017 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 28 945 19.661 T 25-04-2017 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Pfam PF08335 GlnD PII-uridylyltransferase 826 918 5.6E-10 T 25-04-2017 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 Pfam PF08335 GlnD PII-uridylyltransferase 298 437 1.9E-46 T 25-04-2017 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 A4U88_RS20975 ccd69b234dc3da010de0dba455563305 945 SUPERFAMILY SSF81593 288 437 7.85E-45 T 25-04-2017 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 Pfam PF13353 4Fe-4S single cluster domain 20 102 1.8E-5 T 25-04-2017 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 PIRSF PIRSF037420 2 359 3.4E-128 T 25-04-2017 IPR017200 Coenzyme PQQ synthesis protein E A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 Gene3D G3DSA:3.20.20.70 11 329 1.3E-67 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 SUPERFAMILY SSF102114 11 320 1.09E-74 T 25-04-2017 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 25-04-2017 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 8 368 1.6E-183 T 25-04-2017 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 SMART SM00729 13 220 0.0025 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 378 189.355 T 25-04-2017 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 A4U88_RS11780 b98e8296ee298001678f979a5061fc2d 378 Pfam PF04055 Radical SAM superfamily 19 172 7.6E-21 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 249 1.2E-78 T 25-04-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 Gene3D G3DSA:3.30.420.40 255 487 8.1E-46 T 25-04-2017 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 PIRSF PIRSF000538 1 494 3.1E-99 T 25-04-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 353 373 - T 25-04-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 Gene3D G3DSA:3.30.420.40 1 246 1.3E-58 T 25-04-2017 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 439 5.9E-23 T 25-04-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 SUPERFAMILY SSF53067 252 487 7.25E-54 T 25-04-2017 A4U88_RS20105 c26acfa36f39e33824e490f409d1edf6 496 SUPERFAMILY SSF53067 3 251 1.56E-61 T 25-04-2017 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 SUPERFAMILY SSF54826 5 137 3.7E-50 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 SMART SM01193 5 134 1.3E-77 T 25-04-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 Pfam PF03952 Enolase, N-terminal domain 5 134 9.2E-54 T 25-04-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 Gene3D G3DSA:3.30.390.10 5 125 3.2E-48 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 5 426 1.1E-182 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PIRSF PIRSF001400 1 426 3.1E-176 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PRINTS PR00148 Enolase signature 312 323 1.3E-40 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PRINTS PR00148 Enolase signature 335 349 1.3E-40 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PRINTS PR00148 Enolase signature 364 381 1.3E-40 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PRINTS PR00148 Enolase signature 107 123 1.3E-40 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PRINTS PR00148 Enolase signature 37 51 1.3E-40 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 PRINTS PR00148 Enolase signature 162 175 1.3E-40 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 Hamap MF_00318 Enolase [eno]. 3 412 41.595 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 SMART SM01192 139 426 4.8E-193 T 25-04-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 Pfam PF00113 Enolase, C-terminal TIM barrel domain 141 425 4.8E-116 T 25-04-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 SUPERFAMILY SSF51604 140 425 1.15E-114 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS11835 625a06e69ac2bfffef75bf37a58435eb 427 Gene3D G3DSA:3.20.20.120 128 425 3.1E-121 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS19985 415c68799f0916de2806702ebe807cc8 321 SUPERFAMILY SSF51735 102 287 1.3E-21 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19985 415c68799f0916de2806702ebe807cc8 321 Gene3D G3DSA:3.40.50.720 136 262 3.5E-17 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19985 415c68799f0916de2806702ebe807cc8 321 SMART SM00829 10 291 0.0014 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS19985 415c68799f0916de2806702ebe807cc8 321 Gene3D G3DSA:3.90.180.10 1 135 6.5E-20 T 25-04-2017 IPR011032 GroES-like A4U88_RS19985 415c68799f0916de2806702ebe807cc8 321 SUPERFAMILY SSF50129 1 136 1.48E-20 T 25-04-2017 IPR011032 GroES-like A4U88_RS21665 eace04062ca6b52442007308bc17f279 355 ProDom PD209215 WITH SIMILARITIES RP592 157 352 2.0E-27 T 25-04-2017 A4U88_RS21665 eace04062ca6b52442007308bc17f279 355 SUPERFAMILY SSF51182 24 165 2.29E-16 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS21665 eace04062ca6b52442007308bc17f279 355 Pfam PF07883 Cupin domain 62 121 7.1E-8 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS21665 eace04062ca6b52442007308bc17f279 355 Gene3D G3DSA:2.60.120.10 47 123 6.0E-12 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS16855 2426bc0581bb4b54d007f578bb967d0c 183 Gene3D G3DSA:3.40.30.10 103 181 1.0E-10 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS16855 2426bc0581bb4b54d007f578bb967d0c 183 SUPERFAMILY SSF52833 32 182 1.9E-49 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS16855 2426bc0581bb4b54d007f578bb967d0c 183 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 41 183 9.6E-51 T 25-04-2017 A4U88_RS16855 2426bc0581bb4b54d007f578bb967d0c 183 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 140 158 - T 25-04-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16855 2426bc0581bb4b54d007f578bb967d0c 183 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 39 183 7.6E-53 T 25-04-2017 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 183 3.4E-31 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 25-04-2017 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 Gene3D G3DSA:1.10.10.10 122 187 5.0E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 SUPERFAMILY SSF88946 2 104 1.11E-29 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 Pfam PF04542 Sigma-70 region 2 25 91 7.0E-17 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 4.3E-99 T 25-04-2017 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 Gene3D G3DSA:1.10.1740.10 2 109 3.2E-36 T 25-04-2017 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 SUPERFAMILY SSF88659 122 183 9.53E-19 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18670 de2b5e21cedd38a6908ce7906f9432ed 191 Pfam PF08281 Sigma-70, region 4 129 180 4.4E-19 T 25-04-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Gene3D G3DSA:3.30.2090.10 703 784 4.7E-17 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Gene3D G3DSA:3.30.2090.10 183 265 1.6E-15 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82866 290 491 3.92E-47 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82714 183 266 4.71E-16 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 0.0 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Gene3D G3DSA:3.30.70.1430 40 142 2.0E-29 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1024 27.297 T 25-04-2017 IPR023931 Multidrug resistance protein MdtC A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82693 555 650 1.05E-16 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Gene3D G3DSA:3.30.70.1430 558 649 2.3E-12 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82866 812 1010 1.31E-41 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82693 136 182 2.3E-22 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82693 268 324 2.3E-22 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82693 788 833 1.5E-5 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82693 665 701 1.5E-5 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Gene3D G3DSA:1.10.3850.10 794 1010 1.2E-51 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 605 619 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 4.5E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 Gene3D G3DSA:1.20.1640.10 285 500 4.4E-58 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82693 40 135 6.02E-23 T 25-04-2017 A4U88_RS18095 ad9e940111a209df1c68a5facf0c5299 1026 SUPERFAMILY SSF82714 703 785 2.22E-16 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 Pfam PF07702 UTRA domain 113 248 4.7E-35 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 SMART SM00866 113 249 2.3E-34 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 Gene3D G3DSA:1.10.10.10 21 84 8.0E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 SUPERFAMILY SSF64288 76 253 2.83E-42 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 78 2.4E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 62 2.4E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 SUPERFAMILY SSF46785 21 97 7.49E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 SMART SM00345 29 88 3.6E-12 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 Gene3D G3DSA:3.40.1410.10 85 253 8.7E-45 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS09870 3625b6d07145365c3907074af6a1fe33 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 26 88 1.6E-14 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PIRSF PIRSF000106 3 563 4.5E-228 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 Gene3D G3DSA:3.40.50.10380 17 268 7.8E-118 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 SUPERFAMILY SSF51735 271 562 5.2E-94 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.69 T 25-04-2017 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 25-04-2017 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 1.6E-101 T 25-04-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 1.5E-78 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 Gene3D G3DSA:3.40.50.720 269 562 2.3E-108 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 SMART SM00919 271 531 3.5E-133 T 25-04-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 408 424 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 87 111 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 242 260 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 147 176 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 183 205 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 267 283 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 PRINTS PR00072 Malic enzyme signature 298 314 1.0E-72 T 25-04-2017 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 SMART SM01274 81 261 6.8E-109 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS07590 2814fd1d1710fc080d1eab8020adab21 565 SUPERFAMILY SSF53223 6 270 7.91E-112 T 25-04-2017 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 6.9E-72 T 25-04-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 Gene3D G3DSA:3.40.50.720 1 158 1.9E-78 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 SMART SM00846 3 150 5.7E-96 T 25-04-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 SUPERFAMILY SSF51735 3 166 1.3E-67 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 25-04-2017 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 SUPERFAMILY SSF55347 149 312 1.93E-81 T 25-04-2017 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 2.9E-47 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 2.9E-47 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 2.9E-47 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.9E-47 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 2.9E-47 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 Gene3D G3DSA:3.30.360.10 159 314 1.5E-86 T 25-04-2017 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 9.2E-135 T 25-04-2017 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 150 1.8E-59 T 25-04-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS13350 96a29e60fdc0d9d1cb6e0c99be8e0b8c 331 PIRSF PIRSF000149 1 331 8.1E-136 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 SUPERFAMILY SSF47741 103 169 1.57E-29 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 SUPERFAMILY SSF54292 24 97 5.9E-21 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 Gene3D G3DSA:1.10.150.120 94 168 9.8E-32 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 Pfam PF01799 [2Fe-2S] binding domain 92 164 8.4E-29 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 Gene3D G3DSA:3.10.20.30 20 93 5.5E-26 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS11345 8838f95c1a94495130440f93e6d3fecb 180 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 26 71 1.6E-5 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 2.3E-41 T 25-04-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 SUPERFAMILY SSF51735 5 282 6.69E-91 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 1.5E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 PRINTS PR00084 Mannitol dehydrogenase signature 249 264 1.5E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 1.5E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 1.5E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 Gene3D G3DSA:1.10.1040.10 284 488 3.0E-73 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 SUPERFAMILY SSF48179 284 487 6.12E-66 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 Gene3D G3DSA:3.40.50.720 10 282 1.5E-104 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16385 9ffe27091ed21ef266b13cbe5ff5e2a6 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 218 461 2.5E-90 T 25-04-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 7.8E-19 T 25-04-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 25-04-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 SMART SM00478 38 185 2.5E-52 T 25-04-2017 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 25-04-2017 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 Gene3D G3DSA:1.10.1670.10 123 208 1.6E-35 T 25-04-2017 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 PIRSF PIRSF001435 1 210 1.4E-48 T 25-04-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 25-04-2017 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 SUPERFAMILY SSF48150 2 207 8.79E-73 T 25-04-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 TIGRFAM TIGR01083 nth: endonuclease III 3 194 7.7E-88 T 25-04-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.571 T 25-04-2017 IPR005759 Endonuclease III GO:0003906|GO:0006284 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 SMART SM00525 186 206 1.4E-5 T 25-04-2017 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 Gene3D G3DSA:1.10.340.30 23 122 8.4E-33 T 25-04-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 A4U88_RS10975 91ac96aff4a0a6ce36052c90495826bc 213 Pfam PF00633 Helix-hairpin-helix motif 100 127 3.8E-7 T 25-04-2017 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 A4U88_RS05175 97b512a00c57f43f859fb41456844f12 109 SUPERFAMILY SSF82607 11 103 4.05E-36 T 25-04-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family A4U88_RS05175 97b512a00c57f43f859fb41456844f12 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 5.6E-42 T 25-04-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family A4U88_RS05175 97b512a00c57f43f859fb41456844f12 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.277 T 25-04-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family A4U88_RS05175 97b512a00c57f43f859fb41456844f12 109 Gene3D G3DSA:3.30.1310.10 1 109 4.4E-51 T 25-04-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family A4U88_RS05175 97b512a00c57f43f859fb41456844f12 109 PIRSF PIRSF004555 3 109 5.0E-39 T 25-04-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family A4U88_RS05175 97b512a00c57f43f859fb41456844f12 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 5.5E-35 T 25-04-2017 IPR004401 Nucleoid-associated protein YbaB/EbfC family A4U88_RS23990 6fc146fb863761907ebf27022842de9b 172 Gene3D G3DSA:3.40.50.300 6 169 7.8E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23990 6fc146fb863761907ebf27022842de9b 172 SUPERFAMILY SSF52540 6 168 1.32E-24 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23990 6fc146fb863761907ebf27022842de9b 172 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 142 1.3E-47 T 25-04-2017 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 A4U88_RS23990 6fc146fb863761907ebf27022842de9b 172 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 167 1.9E-45 T 25-04-2017 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 Gene3D G3DSA:3.40.190.10 94 177 1.3E-24 T 25-04-2017 A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 SUPERFAMILY SSF46785 5 114 4.54E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 SUPERFAMILY SSF53850 91 300 1.13E-46 T 25-04-2017 A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 Gene3D G3DSA:3.40.190.10 178 264 1.2E-19 T 25-04-2017 A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.2E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 Pfam PF03466 LysR substrate binding domain 91 297 2.9E-47 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS10165 04efdbe9918c33388d8c383062d682e8 313 Gene3D G3DSA:1.10.10.10 6 89 2.4E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09610 148a167ff8cf469008882a77801cd6ca 475 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 24 428 8.9E-66 T 25-04-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 A4U88_RS09610 148a167ff8cf469008882a77801cd6ca 475 SUPERFAMILY SSF143968 327 474 5.62E-22 T 25-04-2017 A4U88_RS09610 148a167ff8cf469008882a77801cd6ca 475 SUPERFAMILY SSF50475 10 318 4.32E-42 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS09610 148a167ff8cf469008882a77801cd6ca 475 Gene3D G3DSA:3.40.1670.10 353 462 4.5E-21 T 25-04-2017 A4U88_RS15695 a56b5d9396d4b69965deb3c231d8bc4a 189 Gene3D G3DSA:1.10.260.40 6 80 1.6E-20 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS15695 a56b5d9396d4b69965deb3c231d8bc4a 189 Gene3D G3DSA:2.60.120.10 85 184 3.5E-13 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS15695 a56b5d9396d4b69965deb3c231d8bc4a 189 SMART SM00530 15 70 5.7E-15 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS15695 a56b5d9396d4b69965deb3c231d8bc4a 189 SUPERFAMILY SSF51182 54 185 1.65E-17 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS15695 a56b5d9396d4b69965deb3c231d8bc4a 189 SUPERFAMILY SSF47413 8 75 2.52E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS15695 a56b5d9396d4b69965deb3c231d8bc4a 189 Pfam PF01381 Helix-turn-helix 16 70 2.0E-13 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 465 487 8.3E-35 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 251 270 8.3E-35 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 426 449 8.3E-35 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 493 516 8.3E-35 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 382 393 8.3E-35 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 PRINTS PR01183 Ribonucleotide reductase large chain signature 577 604 8.3E-35 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 103 696 8.7E-159 T 25-04-2017 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 15 714 0.0 T 25-04-2017 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 Pfam PF02867 Ribonucleotide reductase, barrel domain 176 693 4.8E-144 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 100 171 2.0E-12 T 25-04-2017 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 SUPERFAMILY SSF51998 175 698 1.04E-188 T 25-04-2017 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 Pfam PF08343 Ribonucleotide reductase N-terminal 16 97 5.0E-33 T 25-04-2017 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 SUPERFAMILY SSF48168 15 174 1.22E-59 T 25-04-2017 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 Gene3D G3DSA:3.20.70.20 108 297 2.1E-58 T 25-04-2017 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 Gene3D G3DSA:3.20.70.20 350 513 2.1E-58 T 25-04-2017 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 Gene3D G3DSA:3.20.70.20 577 694 2.1E-58 T 25-04-2017 A4U88_RS18930 ecc45227ec44990997c1b6abddd11def 714 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 566 588 - T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 SMART SM00965 70 121 1.1E-6 T 25-04-2017 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Pfam PF07660 Secretin and TonB N terminus short domain 70 120 6.3E-7 T 25-04-2017 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Pfam PF00593 TonB dependent receptor 594 894 2.5E-30 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 SUPERFAMILY SSF56935 587 744 1.47E-88 T 25-04-2017 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 SUPERFAMILY SSF56935 353 559 1.47E-88 T 25-04-2017 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 SUPERFAMILY SSF56935 150 321 1.47E-88 T 25-04-2017 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 SUPERFAMILY SSF56935 781 895 1.47E-88 T 25-04-2017 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 134 895 7.7E-178 T 25-04-2017 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 146 895 2.7E-132 T 25-04-2017 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Pfam PF07715 TonB-dependent Receptor Plug Domain 152 259 3.1E-12 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Gene3D G3DSA:2.170.130.10 149 272 1.3E-35 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Gene3D G3DSA:2.40.170.20 276 546 4.1E-75 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Gene3D G3DSA:2.40.170.20 792 895 4.1E-75 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS04645 dea0977177fa1180c69a3f71ca1f6ada 895 Gene3D G3DSA:2.40.170.20 587 757 4.1E-75 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 51 6.8E-8 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 PIRSF PIRSF004491 1 311 1.6E-104 T 25-04-2017 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 Gene3D G3DSA:3.40.50.620 1 179 1.5E-67 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 SUPERFAMILY SSF82114 174 307 6.32E-45 T 25-04-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 Pfam PF01687 Riboflavin kinase 184 306 1.9E-38 T 25-04-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 Gene3D G3DSA:2.40.30.30 180 307 4.8E-40 T 25-04-2017 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 Pfam PF06574 FAD synthetase 12 167 2.1E-57 T 25-04-2017 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 2.8E-114 T 25-04-2017 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 SMART SM00904 183 307 1.8E-63 T 25-04-2017 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 A4U88_RS03075 2cff9be0ec0b7c90ad8b7cc56e4788cd 312 SUPERFAMILY SSF52374 15 175 6.19E-37 T 25-04-2017 A4U88_RS11300 d4b443c2dae8d33d5a9a39742809f693 733 Gene3D G3DSA:3.40.390.10 413 555 4.1E-53 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS11300 d4b443c2dae8d33d5a9a39742809f693 733 Pfam PF01432 Peptidase family M3 281 727 3.4E-140 T 25-04-2017 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 A4U88_RS11300 d4b443c2dae8d33d5a9a39742809f693 733 Gene3D G3DSA:1.20.1050.40 64 195 3.0E-24 T 25-04-2017 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal A4U88_RS11300 d4b443c2dae8d33d5a9a39742809f693 733 SUPERFAMILY SSF55486 64 725 1.12E-181 T 25-04-2017 A4U88_RS11300 d4b443c2dae8d33d5a9a39742809f693 733 Gene3D G3DSA:1.10.1370.10 556 731 4.1E-117 T 25-04-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 A4U88_RS11300 d4b443c2dae8d33d5a9a39742809f693 733 Gene3D G3DSA:1.10.1370.10 197 403 4.1E-117 T 25-04-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 PIRSF PIRSF006444 1 435 8.2E-204 T 25-04-2017 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 12 433 1.1E-220 T 25-04-2017 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716 A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 Gene3D G3DSA:3.40.50.980 90 246 2.2E-14 T 25-04-2017 A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 Pfam PF00501 AMP-binding enzyme 81 291 2.2E-15 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 Pfam PF14535 AMP-binding enzyme C-terminal domain 337 433 4.0E-27 T 25-04-2017 IPR028154 AMP-dependent ligase, C-terminal A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 Gene3D G3DSA:3.30.300.30 327 433 5.9E-37 T 25-04-2017 A4U88_RS15310 c6138fb42f5daa65f8dc8824903299c3 435 SUPERFAMILY SSF56801 18 396 3.4E-64 T 25-04-2017 A4U88_RS14840 cbacc6300707564bfd0304ae3acf8ec8 226 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 45 53 - T 25-04-2017 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 A4U88_RS14840 cbacc6300707564bfd0304ae3acf8ec8 226 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 5 210 5.7E-91 T 25-04-2017 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 A4U88_RS14840 cbacc6300707564bfd0304ae3acf8ec8 226 Gene3D G3DSA:3.40.810.20 6 211 2.4E-78 T 25-04-2017 A4U88_RS14840 cbacc6300707564bfd0304ae3acf8ec8 226 SUPERFAMILY SSF100950 6 212 1.32E-63 T 25-04-2017 A4U88_RS14840 cbacc6300707564bfd0304ae3acf8ec8 226 SMART SM00882 7 204 1.2E-68 T 25-04-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 A4U88_RS14840 cbacc6300707564bfd0304ae3acf8ec8 226 Pfam PF01144 Coenzyme A transferase 7 184 7.9E-36 T 25-04-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 25-04-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.254 T 25-04-2017 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 1.8E-39 T 25-04-2017 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 Pfam PF00312 Ribosomal protein S15 8 88 1.2E-37 T 25-04-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 SMART SM01387 8 88 2.9E-52 T 25-04-2017 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 1.0E-38 T 25-04-2017 A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 SUPERFAMILY SSF47060 3 89 7.95E-35 T 25-04-2017 IPR009068 S15/NS1, RNA-binding A4U88_RS01980 ada6d235fb92c86e97fe337fedbda5ee 89 Gene3D G3DSA:1.10.287.10 3 89 1.0E-38 T 25-04-2017 IPR009068 S15/NS1, RNA-binding A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 SUPERFAMILY SSF46785 9 77 8.56E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 SUPERFAMILY SSF53383 111 471 6.26E-81 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 Gene3D G3DSA:3.40.640.10 144 339 4.3E-39 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 Gene3D G3DSA:3.90.1150.10 340 471 1.7E-19 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 Gene3D G3DSA:1.10.10.10 8 75 7.8E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 SMART SM00345 15 74 5.8E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.0E-14 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS00165 f4cd538631c2eedbcb3999668538ba62 488 Pfam PF00155 Aminotransferase class I and II 148 467 1.7E-25 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS14040 f0fdfa6c2d7eaf36549f982717a7e24a 268 Gene3D G3DSA:3.60.15.10 26 265 1.1E-31 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS14040 f0fdfa6c2d7eaf36549f982717a7e24a 268 SUPERFAMILY SSF56281 25 266 3.01E-28 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS14040 f0fdfa6c2d7eaf36549f982717a7e24a 268 Pfam PF00753 Metallo-beta-lactamase superfamily 32 250 1.6E-14 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS14040 f0fdfa6c2d7eaf36549f982717a7e24a 268 SMART SM00849 31 264 1.4E-5 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11545 3a79d510938a10f24a3683dff196e400 572 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 214 6.1E-17 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS11545 3a79d510938a10f24a3683dff196e400 572 Gene3D G3DSA:3.90.1310.10 136 234 2.1E-24 T 25-04-2017 A4U88_RS11545 3a79d510938a10f24a3683dff196e400 572 SUPERFAMILY SSF56601 228 565 3.48E-77 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS11545 3a79d510938a10f24a3683dff196e400 572 SUPERFAMILY SSF56519 55 227 7.06E-38 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS11545 3a79d510938a10f24a3683dff196e400 572 Pfam PF00905 Penicillin binding protein transpeptidase domain 253 548 2.8E-69 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS11545 3a79d510938a10f24a3683dff196e400 572 Gene3D G3DSA:3.40.710.10 235 555 1.5E-73 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 951 985 - T 25-04-2017 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 Pfam PF00924 Mechanosensitive ion channel 879 1077 8.6E-51 T 25-04-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 481 818 6.0E-115 T 25-04-2017 IPR025692 Mechanosensitive ion channel inner membrane domain 1 A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 Gene3D G3DSA:2.30.30.60 937 986 1.1E-16 T 25-04-2017 A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 Pfam PF12795 Mechanosensitive ion channel porin domain 31 261 1.3E-59 T 25-04-2017 IPR024393 Mechanosensitive ion channel MscS, porin domain A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 SUPERFAMILY SSF50182 922 987 1.31E-17 T 25-04-2017 IPR010920 LSM domain A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 SUPERFAMILY SSF82861 838 920 4.18E-6 T 25-04-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 SUPERFAMILY SSF82689 989 1086 9.02E-15 T 25-04-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 A4U88_RS01595 cd8809a1c088ee8ab1201f3e0e9cfed5 1115 Gene3D G3DSA:3.30.70.100 994 1076 5.0E-7 T 25-04-2017 A4U88_RS08145 7ed88d699ae94ea836d6c5840894c0ff 479 Pfam PF11066 Protein of unknown function (DUF2867) 332 463 5.4E-14 T 25-04-2017 IPR021295 Protein of unknown function DUF2867 A4U88_RS08145 7ed88d699ae94ea836d6c5840894c0ff 479 SUPERFAMILY SSF51735 3 293 3.84E-46 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08145 7ed88d699ae94ea836d6c5840894c0ff 479 Pfam PF13460 NAD(P)H-binding 10 150 5.2E-14 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08145 7ed88d699ae94ea836d6c5840894c0ff 479 Gene3D G3DSA:3.40.50.720 3 221 2.1E-35 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02035 67e5464b52b4a02e5261de2b367414e8 331 Pfam PF01136 Peptidase family U32 76 330 2.5E-67 T 25-04-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 A4U88_RS02035 67e5464b52b4a02e5261de2b367414e8 331 Gene3D G3DSA:3.20.20.150 12 95 3.5E-4 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS02035 67e5464b52b4a02e5261de2b367414e8 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 25-04-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 A4U88_RS02035 67e5464b52b4a02e5261de2b367414e8 331 SUPERFAMILY SSF51391 11 161 5.49E-5 T 25-04-2017 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 SMART SM00841 131 186 4.9E-31 T 25-04-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 SMART SM01185 69 123 1.2E-26 T 25-04-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 25-04-2017 IPR013852 Translation elongation factor P/YeiP, conserved site A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 6.8E-23 T 25-04-2017 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Gene3D G3DSA:2.40.50.140 130 187 4.6E-28 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 SUPERFAMILY SSF50249 130 187 5.82E-18 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 SUPERFAMILY SSF50249 69 128 3.08E-18 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 8.1E-24 T 25-04-2017 IPR013185 Translation elongation factor, KOW-like A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 TIGRFAM TIGR00038 efp: translation elongation factor P 4 187 9.7E-76 T 25-04-2017 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 PIRSF PIRSF005901 2 188 8.0E-66 T 25-04-2017 IPR020599 Translation elongation factor P/YeiP A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 4.1E-25 T 25-04-2017 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 SUPERFAMILY SSF50104 4 63 8.42E-18 T 25-04-2017 IPR008991 Translation protein SH3-like domain A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 48.948 T 25-04-2017 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Gene3D G3DSA:2.30.30.30 1 65 9.9E-27 T 25-04-2017 IPR014722 Ribosomal protein L2 domain 2 A4U88_RS01545 83b49286587674814cf63efbcf9095ed 188 Gene3D G3DSA:2.40.50.140 66 129 9.6E-26 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 SMART SM00986 49 210 4.1E-41 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 Gene3D G3DSA:3.40.470.10 6 220 6.3E-103 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.692 T 25-04-2017 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 25-04-2017 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 SMART SM00987 49 210 4.1E-41 T 25-04-2017 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 SUPERFAMILY SSF52141 5 220 3.05E-97 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 Pfam PF03167 Uracil DNA glycosylase superfamily 54 209 7.1E-25 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS18705 6db58a4ef5b9f3c6cef7f725470532be 227 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 5.0E-89 T 25-04-2017 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS11635 d4ad17b173e39a469cafd17cdfeffb7f 355 SUPERFAMILY SSF51735 4 202 3.26E-50 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11635 d4ad17b173e39a469cafd17cdfeffb7f 355 Gene3D G3DSA:3.40.50.720 6 133 1.2E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11635 d4ad17b173e39a469cafd17cdfeffb7f 355 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 242 1.1E-14 T 25-04-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS11635 d4ad17b173e39a469cafd17cdfeffb7f 355 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 9 123 6.9E-24 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS11635 d4ad17b173e39a469cafd17cdfeffb7f 355 Gene3D G3DSA:3.30.360.10 134 340 2.3E-35 T 25-04-2017 A4U88_RS09175 3b6047ad77b0b7adddcc94a35622da78 193 Pfam PF02545 Maf-like protein 3 185 2.1E-46 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS09175 3b6047ad77b0b7adddcc94a35622da78 193 Gene3D G3DSA:3.90.950.10 2 189 7.2E-59 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS09175 3b6047ad77b0b7adddcc94a35622da78 193 SUPERFAMILY SSF52972 2 185 3.34E-58 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS09175 3b6047ad77b0b7adddcc94a35622da78 193 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 30.174 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS09175 3b6047ad77b0b7adddcc94a35622da78 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 185 1.8E-59 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS09175 3b6047ad77b0b7adddcc94a35622da78 193 PIRSF PIRSF006305 1 192 2.5E-43 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS17560 b53871c8a623b0e7b7441d119c646c3e 461 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 11 445 5.2E-223 T 25-04-2017 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 A4U88_RS17560 b53871c8a623b0e7b7441d119c646c3e 461 PIRSF PIRSF018788 1 458 9.2E-234 T 25-04-2017 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 A4U88_RS17560 b53871c8a623b0e7b7441d119c646c3e 461 Gene3D G3DSA:2.30.170.30 2 53 6.9E-24 T 25-04-2017 A4U88_RS17560 b53871c8a623b0e7b7441d119c646c3e 461 Gene3D G3DSA:3.20.20.70 141 447 1.3E-162 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS17560 b53871c8a623b0e7b7441d119c646c3e 461 Gene3D G3DSA:1.10.220.70 54 140 1.9E-41 T 25-04-2017 A4U88_RS22280 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 SUPERFAMILY SSF57716 2 101 3.64E-36 T 25-04-2017 A4U88_RS22280 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 25-04-2017 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22280 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.446 T 25-04-2017 IPR023036 Ribosomal protein S14, bacterial/plastid A4U88_RS22280 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 3.7E-25 T 25-04-2017 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22280 81b3e4e7a8b3dd19ddf810f3e1c03d72 101 Gene3D G3DSA:4.10.830.10 41 101 1.2E-29 T 25-04-2017 A4U88_RS00075 52357ccfb20955928232d24f5a1fe579 397 Gene3D G3DSA:3.90.1150.10 249 391 4.8E-18 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS00075 52357ccfb20955928232d24f5a1fe579 397 SUPERFAMILY SSF53383 8 392 6.74E-62 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS00075 52357ccfb20955928232d24f5a1fe579 397 Gene3D G3DSA:3.40.640.10 35 248 2.7E-40 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS00075 52357ccfb20955928232d24f5a1fe579 397 Pfam PF00155 Aminotransferase class I and II 47 383 5.0E-22 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 25-04-2017 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 Gene3D G3DSA:3.30.470.20 94 219 1.2E-48 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 Gene3D G3DSA:3.30.200.20 7 93 4.8E-32 T 25-04-2017 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 235 5.4E-81 T 25-04-2017 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 Pfam PF01259 SAICAR synthetase 6 231 1.6E-57 T 25-04-2017 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 25-04-2017 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 29.15 T 25-04-2017 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 A4U88_RS17885 4dedac050edb808b4fa5804b84352d56 237 SUPERFAMILY SSF56104 2 232 3.24E-76 T 25-04-2017 A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 SMART SM00354 4 74 2.8E-21 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 Gene3D G3DSA:1.10.260.40 5 56 1.0E-21 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 51 1.1E-12 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 SUPERFAMILY SSF47413 3 62 1.41E-15 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 SUPERFAMILY SSF53822 61 311 3.43E-45 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 265 2.4E-22 T 25-04-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 Gene3D G3DSA:3.40.50.2300 176 308 3.4E-33 T 25-04-2017 A4U88_RS11910 4bef52559bc20013b7151c6c54a0eb5d 338 Gene3D G3DSA:3.40.50.2300 57 175 5.5E-31 T 25-04-2017 A4U88_RS15080 b4972b1c47d970c2c55d25d6fc35a1e5 67 Pfam PF05489 Phage Tail Protein X 1 56 2.0E-26 T 25-04-2017 IPR008861 Phage Tail Protein X-like A4U88_RS08600 774b50eccbc818eaa0ed26db46269da5 105 SMART SM00992 3 102 3.0E-38 T 25-04-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 A4U88_RS08600 774b50eccbc818eaa0ed26db46269da5 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 39.142 T 25-04-2017 IPR022866 Heat shock protein HspQ A4U88_RS08600 774b50eccbc818eaa0ed26db46269da5 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 102 4.3E-34 T 25-04-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 A4U88_RS08600 774b50eccbc818eaa0ed26db46269da5 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 7.3E-21 T 25-04-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 A4U88_RS08600 774b50eccbc818eaa0ed26db46269da5 105 SUPERFAMILY SSF141255 4 96 4.97E-30 T 25-04-2017 IPR011722 Hemimethylated DNA-binding domain GO:0003677 A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 8.4E-18 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 ProSitePatterns PS01081 TetR-type HTH domain signature. 19 50 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 SUPERFAMILY SSF46689 3 76 4.69E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 SUPERFAMILY SSF48498 74 174 1.06E-12 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 Gene3D G3DSA:1.10.357.10 3 176 8.8E-37 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 2.5E-9 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS07180 752fcfbc72de0c041d4d9df1ae5e35c2 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 2.5E-9 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 SMART SM00387 363 475 8.4E-28 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 SMART SM00388 252 320 6.4E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 3.9E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 3.9E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 459 472 3.9E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 3.9E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 316 2.5E-13 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 474 6.1E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 SUPERFAMILY SSF55874 324 473 1.83E-32 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 Pfam PF00672 HAMP domain 179 246 1.3E-6 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 SUPERFAMILY SSF47384 235 316 2.94E-16 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 Gene3D G3DSA:1.10.287.130 244 316 1.7E-16 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18565 1cea908943224ea9b27bc529e9cc46ad 478 Gene3D G3DSA:3.30.565.10 324 476 8.6E-35 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 Gene3D G3DSA:2.60.120.10 41 95 1.4E-7 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 Pfam PF12833 Helix-turn-helix domain 190 265 1.2E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 Gene3D G3DSA:1.10.10.60 164 220 1.5E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 SUPERFAMILY SSF46689 220 264 4.48E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 220 261 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 Gene3D G3DSA:1.10.10.60 221 264 8.5E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 265 1.9E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 234 249 1.9E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 SUPERFAMILY SSF51182 40 199 1.16E-13 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS16705 f92d5d5d1f9b13acace6ccf4cb85576d 273 SMART SM00342 183 265 4.9E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS18620 3abf4738680fd50dc620e4a0eab732d5 243 SUPERFAMILY SSF63892 4 242 3.79E-101 T 25-04-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 A4U88_RS18620 3abf4738680fd50dc620e4a0eab732d5 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 2.4E-103 T 25-04-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 A4U88_RS18620 3abf4738680fd50dc620e4a0eab732d5 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 132.935 T 25-04-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 A4U88_RS18620 3abf4738680fd50dc620e4a0eab732d5 243 Gene3D G3DSA:3.20.20.70 4 242 1.5E-110 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS18620 3abf4738680fd50dc620e4a0eab732d5 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 1.8E-103 T 25-04-2017 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 A4U88_RS01260 0fd9e7ff45ce747b5c0507273a9423d9 223 Pfam PF07356 Protein of unknown function (DUF1481) 34 219 4.3E-74 T 25-04-2017 IPR010858 Protein of unknown function DUF1481 A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 SUPERFAMILY SSF52833 4 81 3.71E-20 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 Pfam PF00462 Glutaredoxin 4 69 7.2E-16 T 25-04-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 Gene3D G3DSA:3.40.30.10 4 81 5.2E-26 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 PRINTS PR00160 Glutaredoxin signature 52 65 8.1E-12 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 PRINTS PR00160 Glutaredoxin signature 66 79 8.1E-12 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 PRINTS PR00160 Glutaredoxin signature 3 21 8.1E-12 T 25-04-2017 IPR014025 Glutaredoxin subgroup A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 25-04-2017 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 A4U88_RS08040 b307315530c47b490ed0e38954d70813 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 5.1E-51 T 25-04-2017 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 Pfam PF12697 Alpha/beta hydrolase family 28 256 4.5E-18 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 SUPERFAMILY SSF53474 8 266 7.59E-49 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 7.3E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 7.3E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 53 68 7.3E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 PRINTS PR00111 Alpha/beta hydrolase fold signature 214 228 7.3E-8 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS20245 cf7095998d47ca6183090020d9981a03 272 Gene3D G3DSA:3.40.50.1820 8 266 2.1E-48 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 8 440 31.895 T 25-04-2017 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 SUPERFAMILY SSF52540 106 317 6.69E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Gene3D G3DSA:1.10.1750.10 340 440 6.6E-43 T 25-04-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 SUPERFAMILY SSF48295 337 440 3.14E-38 T 25-04-2017 IPR010921 Trp repressor/replication initiator GO:0043565 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Pfam PF00308 Bacterial dnaA protein 107 323 5.0E-99 T 25-04-2017 IPR013317 Chromosomal replication initiator protein DnaA A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 1 439 1.2E-180 T 25-04-2017 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Pfam PF11638 DnaA N-terminal domain 1 41 3.6E-10 T 25-04-2017 IPR024633 DnaA N-terminal domain A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 350 418 9.6E-33 T 25-04-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 ProSitePatterns PS01008 DnaA protein signature. 399 418 - T 25-04-2017 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Gene3D G3DSA:1.10.8.60 272 339 5.1E-30 T 25-04-2017 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 Gene3D G3DSA:3.40.50.300 95 270 4.9E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 SMART SM00760 349 418 6.1E-45 T 25-04-2017 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 SMART SM00382 138 340 6.3E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 237 264 1.1E-54 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 399 418 1.1E-54 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 203 217 1.1E-54 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 171 185 1.1E-54 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS00005 d647f9d6ddb50fd65e2ebbce054028c3 441 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 139 159 1.1E-54 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Gene3D G3DSA:3.30.230.10 489 603 4.7E-47 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Gene3D G3DSA:3.40.50.300 6 293 8.0E-101 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SUPERFAMILY SSF54211 484 605 3.54E-42 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SMART SM00889 485 604 1.7E-69 T 25-04-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 PRINTS PR00315 GTP-binding elongation factor signature 137 146 4.2E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 PRINTS PR00315 GTP-binding elongation factor signature 85 95 4.2E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 PRINTS PR00315 GTP-binding elongation factor signature 12 25 4.2E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 PRINTS PR00315 GTP-binding elongation factor signature 58 66 4.2E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 PRINTS PR00315 GTP-binding elongation factor signature 101 112 4.2E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Pfam PF14492 Elongation Factor G, domain II 409 483 4.4E-34 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SUPERFAMILY SSF54980 407 485 7.19E-25 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SMART SM00838 606 695 1.9E-54 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Gene3D G3DSA:3.30.70.240 604 698 7.4E-33 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Pfam PF00679 Elongation factor G C-terminus 606 694 2.3E-31 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SUPERFAMILY SSF52540 6 288 1.88E-105 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Gene3D G3DSA:3.30.70.870 411 485 1.9E-37 T 25-04-2017 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 700 0.0 T 25-04-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SUPERFAMILY SSF54980 609 697 6.83E-31 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Gene3D G3DSA:2.40.30.10 310 410 4.4E-38 T 25-04-2017 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 7.0E-31 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 SUPERFAMILY SSF50447 272 409 2.42E-35 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Hamap MF_00054_B Elongation factor G [fusA]. 6 699 108.464 T 25-04-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 5.4E-65 T 25-04-2017 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Pfam PF03764 Elongation factor G, domain IV 484 603 4.4E-45 T 25-04-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 Pfam PF03144 Elongation factor Tu domain 2 329 396 8.1E-17 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS12275 4ba1fa625cbca6f04b0e0182bf7c9bbf 701 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS14715 a46066c49ff3023e0a7dbba907c30615 579 Gene3D G3DSA:2.60.200.20 26 102 4.6E-9 T 25-04-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 A4U88_RS14715 a46066c49ff3023e0a7dbba907c30615 579 Pfam PF00498 FHA domain 27 93 1.6E-7 T 25-04-2017 IPR000253 Forkhead-associated (FHA) domain GO:0005515 A4U88_RS14715 a46066c49ff3023e0a7dbba907c30615 579 SUPERFAMILY SSF49879 23 106 1.22E-12 T 25-04-2017 IPR008984 SMAD/FHA domain GO:0005515 A4U88_RS14715 a46066c49ff3023e0a7dbba907c30615 579 TIGRFAM TIGR03354 VI_FHA: type VI secretion system FHA domain protein 243 566 8.1E-43 T 25-04-2017 IPR017735 Type VI secretion system, FHA domain-containing protein A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 Pfam PF10509 Galactokinase galactose-binding signature 10 58 5.2E-23 T 25-04-2017 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00959 Mevalonate kinase family signature 25 49 2.7E-46 T 25-04-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00959 Mevalonate kinase family signature 328 345 2.7E-46 T 25-04-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00959 Mevalonate kinase family signature 162 181 2.7E-46 T 25-04-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00959 Mevalonate kinase family signature 119 141 2.7E-46 T 25-04-2017 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 Pfam PF08544 GHMP kinases C terminal 279 361 2.1E-11 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00473 Galactokinase signature 92 103 1.6E-29 T 25-04-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00473 Galactokinase signature 263 277 1.6E-29 T 25-04-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00473 Galactokinase signature 27 45 1.6E-29 T 25-04-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PRINTS PR00473 Galactokinase signature 112 130 1.6E-29 T 25-04-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 SUPERFAMILY SSF55060 206 381 5.76E-53 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 Pfam PF00288 GHMP kinases N terminal domain 114 181 8.2E-15 T 25-04-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 TIGRFAM TIGR00131 gal_kin: galactokinase 7 383 1.3E-156 T 25-04-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 Gene3D G3DSA:3.30.70.890 209 381 5.5E-60 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 Hamap MF_00246 Galactokinase [galK]. 25 382 43.502 T 25-04-2017 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 SUPERFAMILY SSF54211 8 202 1.75E-63 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 PIRSF PIRSF000530 3 383 3.2E-121 T 25-04-2017 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 25-04-2017 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 Gene3D G3DSA:3.30.230.10 9 208 5.7E-78 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS06145 07b0a2be231ff6a51e0e53f7e202ae38 383 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 25-04-2017 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 A4U88_RS21950 5f3bdc13e53132302654ed3d5ec13bab 429 Gene3D G3DSA:2.40.170.10 25 429 2.8E-165 T 25-04-2017 IPR003192 Porin, LamB type GO:0006810|GO:0016020 A4U88_RS21950 5f3bdc13e53132302654ed3d5ec13bab 429 SUPERFAMILY SSF56935 25 429 6.59E-147 T 25-04-2017 A4U88_RS21950 5f3bdc13e53132302654ed3d5ec13bab 429 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 424 0.0 T 25-04-2017 IPR003192 Porin, LamB type GO:0006810|GO:0016020 A4U88_RS21950 5f3bdc13e53132302654ed3d5ec13bab 429 Hamap MF_01301 Maltoporin [lamB]. 3 429 42.524 T 25-04-2017 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 A4U88_RS21950 5f3bdc13e53132302654ed3d5ec13bab 429 Pfam PF02264 LamB porin 27 429 2.3E-145 T 25-04-2017 IPR003192 Porin, LamB type GO:0006810|GO:0016020 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 Gene3D G3DSA:2.30.38.10 399 460 3.9E-21 T 25-04-2017 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 Gene3D G3DSA:3.40.50.980 10 191 1.3E-29 T 25-04-2017 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 Pfam PF00501 AMP-binding enzyme 15 469 6.5E-93 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 SUPERFAMILY SSF56801 339 599 5.1E-112 T 25-04-2017 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 SUPERFAMILY SSF56801 8 288 5.1E-112 T 25-04-2017 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 ProSitePatterns PS00455 Putative AMP-binding domain signature. 186 197 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 Gene3D G3DSA:3.40.50.980 192 283 2.8E-31 T 25-04-2017 A4U88_RS03290 d2ef08da43c36183bc6a2745dcf6e1c8 602 Gene3D G3DSA:3.40.50.980 336 398 2.8E-31 T 25-04-2017 A4U88_RS16290 4420fd944171e25e097bf840bcac8df4 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS16290 4420fd944171e25e097bf840bcac8df4 262 SUPERFAMILY SSF52540 5 229 5.21E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16290 4420fd944171e25e097bf840bcac8df4 262 Gene3D G3DSA:3.40.50.300 6 243 1.4E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16290 4420fd944171e25e097bf840bcac8df4 262 SMART SM00382 30 215 4.0E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16290 4420fd944171e25e097bf840bcac8df4 262 Pfam PF00005 ABC transporter 28 165 2.0E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 26 357 2.3E-18 T 25-04-2017 IPR000560 Histidine phosphatase superfamily, clade-2 GO:0003993 A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 27 41 - T 25-04-2017 IPR033379 Histidine acid phosphatase active site A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 SUPERFAMILY SSF53254 24 408 3.7E-80 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 ProSitePatterns PS00778 Histidine acid phosphatases active site signature. 302 318 - T 25-04-2017 IPR033379 Histidine acid phosphatase active site A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 Gene3D G3DSA:3.40.50.1240 138 270 7.9E-62 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 Gene3D G3DSA:3.40.50.1240 24 137 1.2E-82 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS15830 5cd7590cbb242fd95cfc19d10dff95fc 409 Gene3D G3DSA:3.40.50.1240 272 406 1.2E-82 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS17980 622541ce34df4bbe33cd274b31caaacd 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 404 7.3E-129 T 25-04-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 A4U88_RS17980 622541ce34df4bbe33cd274b31caaacd 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 25-04-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 A4U88_RS17980 622541ce34df4bbe33cd274b31caaacd 429 Pfam PF00860 Permease family 16 383 1.8E-106 T 25-04-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 6.0E-19 T 25-04-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 SUPERFAMILY SSF53223 10 161 7.91E-53 T 25-04-2017 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 25-04-2017 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 SUPERFAMILY SSF51735 163 453 1.49E-87 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 SMART SM01274 18 151 1.8E-80 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 1.8E-98 T 25-04-2017 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Gene3D G3DSA:3.40.50.10750 569 726 6.3E-52 T 25-04-2017 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Pfam PF00390 Malic enzyme, N-terminal domain 115 151 8.2E-6 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 114 7.9E-22 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 SMART SM00919 163 401 1.1E-141 T 25-04-2017 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Gene3D G3DSA:3.40.50.10380 10 160 6.5E-51 T 25-04-2017 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 SUPERFAMILY SSF53659 430 754 1.27E-91 T 25-04-2017 A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 Gene3D G3DSA:3.40.50.720 161 449 3.1E-89 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17730 8d4c278b8dec3a902fa4a769b2c7dc66 759 PIRSF PIRSF036684 1 758 0.0 T 25-04-2017 IPR012188 Malic enzyme, phosphate acetyl/butaryl transferase GO:0004473|GO:0005829|GO:0006108|GO:0016616|GO:0030145|GO:0046872|GO:0055114 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 A4U88_RS16690 e8c377ee0aa48cf981c4843503f61671 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 25-04-2017 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16690 e8c377ee0aa48cf981c4843503f61671 376 SUPERFAMILY SSF47240 3 340 1.28E-113 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS16690 e8c377ee0aa48cf981c4843503f61671 376 Gene3D G3DSA:1.10.620.20 3 340 2.2E-125 T 25-04-2017 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: R-HSA-499943 A4U88_RS16690 e8c377ee0aa48cf981c4843503f61671 376 Pfam PF00268 Ribonucleotide reductase, small chain 33 332 3.8E-47 T 25-04-2017 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 187 212 - T 25-04-2017 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 Gene3D G3DSA:1.10.1040.10 420 498 9.0E-15 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 Gene3D G3DSA:1.10.1040.10 192 288 2.9E-28 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 287 9.4E-28 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 422 501 6.0E-11 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 SUPERFAMILY SSF51735 8 189 3.77E-55 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 2.1E-62 T 25-04-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 SUPERFAMILY SSF48179 419 501 1.11E-14 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 Gene3D G3DSA:3.40.50.720 9 191 2.4E-59 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15295 6cf04746ff765082dac748082f9d7dce 510 SUPERFAMILY SSF48179 189 293 7.4E-29 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS05260 e84b7331459f4954eb089d50dfd43e52 270 Gene3D G3DSA:3.50.30.50 57 261 4.2E-13 T 25-04-2017 A4U88_RS05260 e84b7331459f4954eb089d50dfd43e52 270 Pfam PF04199 Putative cyclase 46 194 4.2E-10 T 25-04-2017 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734 A4U88_RS05260 e84b7331459f4954eb089d50dfd43e52 270 SUPERFAMILY SSF102198 53 260 3.4E-11 T 25-04-2017 A4U88_RS07520 0c569e1d16cfc0ecb53f2dba6433f6fd 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 70 3.5E-13 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS07520 0c569e1d16cfc0ecb53f2dba6433f6fd 301 SUPERFAMILY SSF161098 94 282 6.41E-30 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07520 0c569e1d16cfc0ecb53f2dba6433f6fd 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 300 7.9E-31 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07520 0c569e1d16cfc0ecb53f2dba6433f6fd 301 Gene3D G3DSA:1.10.3720.10 90 297 7.6E-30 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05785 7cfff42869ffef571469208a0370935a 266 SUPERFAMILY SSF100950 1 263 5.44E-104 T 25-04-2017 A4U88_RS05785 7cfff42869ffef571469208a0370935a 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 8 230 6.2E-21 T 25-04-2017 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 A4U88_RS05785 7cfff42869ffef571469208a0370935a 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.845 T 25-04-2017 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 A4U88_RS05785 7cfff42869ffef571469208a0370935a 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 2.7E-138 T 25-04-2017 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 A4U88_RS05785 7cfff42869ffef571469208a0370935a 266 Gene3D G3DSA:3.40.50.1360 1 263 5.1E-113 T 25-04-2017 A4U88_RS05785 7cfff42869ffef571469208a0370935a 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 25-04-2017 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70326 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 SMART SM00342 180 262 7.8E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 Gene3D G3DSA:1.10.10.60 224 261 3.4E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 Pfam PF02311 AraC-like ligand binding domain 31 143 3.2E-7 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 Pfam PF12833 Helix-turn-helix domain 186 261 6.7E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 SUPERFAMILY SSF46689 217 261 9.41E-7 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 SUPERFAMILY SSF51182 31 188 8.3E-13 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 Gene3D G3DSA:1.10.10.60 163 218 2.5E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11885 0065042673c0e2a361b558c25bfb6db1 263 Gene3D G3DSA:2.60.120.10 24 92 2.5E-9 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 2.6E-43 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 Pfam PF01016 Ribosomal L27 protein 2 82 4.9E-39 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 Gene3D G3DSA:2.40.50.100 20 82 4.4E-32 T 25-04-2017 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.1E-38 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.1E-38 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.1E-38 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 SUPERFAMILY SSF110324 2 79 3.49E-34 T 25-04-2017 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-17 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 25-04-2017 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01880 81cfd86d6437533cd5f5bf9958a84a7d 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.053 T 25-04-2017 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS13560 0d3ba5d61c151d1ffdd03d6d069226b7 322 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 13 306 2.2E-92 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS13560 0d3ba5d61c151d1ffdd03d6d069226b7 322 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 52.903 T 25-04-2017 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 A4U88_RS13560 0d3ba5d61c151d1ffdd03d6d069226b7 322 PIRSF PIRSF026649 10 315 1.0E-95 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS13560 0d3ba5d61c151d1ffdd03d6d069226b7 322 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 2.1E-135 T 25-04-2017 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 A4U88_RS16210 c88976bbe5d62c7eb8fe204176abacb8 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 5.5E-47 T 25-04-2017 IPR007458 Protein of unknown function DUF496 A4U88_RS16210 c88976bbe5d62c7eb8fe204176abacb8 105 PIRSF PIRSF028773 1 105 2.7E-51 T 25-04-2017 IPR007458 Protein of unknown function DUF496 A4U88_RS16210 c88976bbe5d62c7eb8fe204176abacb8 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 25.908 T 25-04-2017 IPR007458 Protein of unknown function DUF496 A4U88_RS16210 c88976bbe5d62c7eb8fe204176abacb8 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 2.0E-41 T 25-04-2017 IPR007458 Protein of unknown function DUF496 A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 Gene3D G3DSA:3.40.190.10 180 262 3.2E-10 T 25-04-2017 A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 SUPERFAMILY SSF53850 93 297 8.51E-39 T 25-04-2017 A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 SUPERFAMILY SSF46785 8 114 5.2E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.6E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 Gene3D G3DSA:3.40.190.10 95 179 1.3E-23 T 25-04-2017 A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 Gene3D G3DSA:1.10.10.10 8 91 4.8E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17550 9bab238bb4f95f315476b6f7f68029a8 300 Pfam PF03466 LysR substrate binding domain 91 293 6.5E-40 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 SUPERFAMILY SSF46785 19 84 1.59E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 5.1E-8 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 5.1E-8 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 83 7.5E-14 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 Gene3D G3DSA:1.10.10.10 18 78 6.9E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 SMART SM00866 103 239 3.0E-33 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 Pfam PF07702 UTRA domain 105 238 6.4E-32 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 SMART SM00345 24 83 7.9E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 Gene3D G3DSA:3.40.1410.10 79 242 2.2E-42 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS20825 22deea4c985cce4e89d8d67f32e72a93 244 SUPERFAMILY SSF64288 71 242 3.61E-41 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 Gene3D G3DSA:3.40.190.10 113 209 2.4E-26 T 25-04-2017 A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 SMART SM00062 25 254 1.2E-61 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 Gene3D G3DSA:3.40.190.10 213 253 3.0E-36 T 25-04-2017 A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 Gene3D G3DSA:3.40.190.10 23 111 3.0E-36 T 25-04-2017 A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 253 2.6E-53 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS06585 5a2633142bba29d02c61da699f469e4d 259 SUPERFAMILY SSF53850 2 253 1.52E-58 T 25-04-2017 A4U88_RS13900 9df7d394903b8df6887cb9a5555b38ad 313 Gene3D G3DSA:2.60.120.10 28 264 8.4E-62 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS13900 9df7d394903b8df6887cb9a5555b38ad 313 Pfam PF05726 Pirin C-terminal cupin domain 191 288 1.2E-19 T 25-04-2017 IPR008778 Pirin, C-terminal domain A4U88_RS13900 9df7d394903b8df6887cb9a5555b38ad 313 Pfam PF02678 Pirin 40 139 2.6E-30 T 25-04-2017 IPR003829 Pirin, N-terminal domain A4U88_RS13900 9df7d394903b8df6887cb9a5555b38ad 313 SUPERFAMILY SSF51182 23 301 4.26E-71 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS13900 9df7d394903b8df6887cb9a5555b38ad 313 PIRSF PIRSF006232 21 298 1.6E-72 T 25-04-2017 IPR012093 Pirin A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Pfam PF01706 FliG C-terminal domain 216 322 3.4E-37 T 25-04-2017 IPR023087 Flagellar motor switch protein FliG, C-terminal A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Gene3D G3DSA:1.10.220.30 73 177 6.5E-29 T 25-04-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Pfam PF14841 FliG middle domain 114 186 9.7E-25 T 25-04-2017 IPR032779 Flagellar motor switch protein FliG, middle domain A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Gene3D G3DSA:1.10.220.30 6 70 8.8E-16 T 25-04-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 224 244 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 32 58 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 246 266 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 270 296 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 3 19 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 193 218 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PRINTS PR00954 Flagellar motor switch protein FliG signature 113 136 1.7E-72 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 SUPERFAMILY SSF48029 4 103 2.88E-20 T 25-04-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Gene3D G3DSA:1.10.220.30 232 329 1.9E-37 T 25-04-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 2 330 9.0E-143 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Gene3D G3DSA:3.20.20.120 178 221 7.5E-4 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 SUPERFAMILY SSF48029 114 323 2.49E-62 T 25-04-2017 IPR011002 Flagellar motor switch protein FliG, alpha-helical A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 Pfam PF14842 FliG N-terminal domain 3 102 3.0E-30 T 25-04-2017 IPR028263 Flagellar motor switch protein FliG, N-terminal domain A4U88_RS14345 25bc33b1e7e2a411e069e51adfb79d34 330 PIRSF PIRSF003161 1 330 8.4E-117 T 25-04-2017 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Pfam PF13361 UvrD-like helicase C-terminal domain 666 811 2.5E-12 T 25-04-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Pfam PF13361 UvrD-like helicase C-terminal domain 444 644 3.8E-7 T 25-04-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:1.10.3170.10 159 352 3.9E-67 T 25-04-2017 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 SUPERFAMILY SSF52980 904 1177 9.65E-95 T 25-04-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:3.90.320.10 893 1179 7.2E-107 T 25-04-2017 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Pfam PF00580 UvrD/REP helicase N-terminal domain 16 439 8.4E-60 T 25-04-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 SUPERFAMILY SSF52540 328 822 6.84E-109 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 SUPERFAMILY SSF52540 122 206 6.84E-109 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 SUPERFAMILY SSF52540 17 81 6.84E-109 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:3.40.50.300 732 886 6.0E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:3.40.50.300 453 583 6.0E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 7 1176 22.922 T 25-04-2017 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:1.10.486.10 586 731 3.2E-56 T 25-04-2017 A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:3.40.50.300 12 83 2.1E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:3.40.50.300 124 154 2.1E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 Gene3D G3DSA:3.40.50.300 354 452 2.1E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19420 2cf59228c0f81e441b9f98b6ce61cf32 1186 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1175 0.0 T 25-04-2017 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Gene3D G3DSA:1.10.730.10 380 534 7.3E-42 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Pfam PF09334 tRNA synthetases class I (M) 9 396 1.4E-164 T 25-04-2017 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Gene3D G3DSA:2.40.50.140 566 675 2.2E-38 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 538 675 2.6E-46 T 25-04-2017 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.792 T 25-04-2017 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 SUPERFAMILY SSF57770 142 176 8.11E-13 T 25-04-2017 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 SUPERFAMILY SSF47323 390 547 3.55E-46 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 9 535 6.5E-202 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 4.8E-26 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 4.8E-26 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 4.8E-26 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 4.8E-26 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 4.8E-26 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 4.8E-26 T 25-04-2017 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Gene3D G3DSA:2.20.28.20 145 176 1.4E-19 T 25-04-2017 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Pfam PF01588 Putative tRNA binding domain 579 672 2.5E-21 T 25-04-2017 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 SUPERFAMILY SSF52374 176 387 4.1E-105 T 25-04-2017 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 SUPERFAMILY SSF52374 6 141 4.1E-105 T 25-04-2017 A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 SUPERFAMILY SSF50249 568 674 4.9E-28 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Gene3D G3DSA:3.40.50.620 183 379 2.2E-91 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS07620 d23e914dd90e567349bb58e63ff07e94 675 Gene3D G3DSA:3.40.50.620 6 144 2.2E-91 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 SMART SM00354 1 71 2.9E-30 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 Gene3D G3DSA:3.40.50.2300 167 330 1.9E-53 T 25-04-2017 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 SUPERFAMILY SSF47413 1 56 4.14E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 Gene3D G3DSA:1.10.260.40 2 58 1.6E-23 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 SUPERFAMILY SSF53822 61 332 5.3E-79 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 Pfam PF13377 Periplasmic binding protein-like domain 170 329 3.7E-34 T 25-04-2017 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 Gene3D G3DSA:3.40.50.2300 59 166 1.3E-35 T 25-04-2017 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.5E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.5E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22425 648bc5d867dcc882e3690cb33e722418 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.6E-21 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 PIRSF PIRSF000538 1 495 2.7E-79 T 25-04-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 SUPERFAMILY SSF53067 251 490 5.0E-44 T 25-04-2017 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 355 375 - T 25-04-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 Gene3D G3DSA:3.30.420.40 1 246 1.7E-52 T 25-04-2017 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 SUPERFAMILY SSF53067 4 252 9.72E-54 T 25-04-2017 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 442 9.4E-22 T 25-04-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 Gene3D G3DSA:3.30.420.40 255 490 3.9E-30 T 25-04-2017 A4U88_RS16170 3b73d3abc6b1fe8e400ebc92c981cd03 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 248 3.1E-59 T 25-04-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 25-04-2017 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 361 446 3.0E-5 T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 118 294 2.2E-8 T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 SUPERFAMILY SSF52922 702 885 2.42E-61 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 SUPERFAMILY SSF52518 58 469 7.12E-145 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 Gene3D G3DSA:3.40.50.970 59 470 1.7E-158 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 SUPERFAMILY SSF52518 474 701 3.18E-98 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 Gene3D G3DSA:3.40.50.970 473 705 1.3E-119 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 PIRSF PIRSF000156 1 887 0.0 T 25-04-2017 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 A4U88_RS20480 3f101c0cc35a3bb2f64dd7e726e558bd 887 Gene3D G3DSA:3.40.50.920 707 885 1.2E-75 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Pfam PF11799 impB/mucB/samB family C-terminal domain 236 343 1.9E-8 T 25-04-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Gene3D G3DSA:3.30.70.270 66 164 2.1E-34 T 25-04-2017 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 SUPERFAMILY SSF56672 1 234 1.51E-92 T 25-04-2017 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Gene3D G3DSA:3.30.1490.100 238 351 1.6E-41 T 25-04-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Pfam PF11798 IMS family HHH motif 168 196 1.1E-7 T 25-04-2017 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Pfam PF00817 impB/mucB/samB family 7 154 2.0E-49 T 25-04-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Gene3D G3DSA:1.10.150.20 165 237 2.1E-26 T 25-04-2017 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 SUPERFAMILY SSF100879 241 351 3.34E-26 T 25-04-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS04175 f32a20ff34b05858c8b7082238ab304f 353 Hamap MF_01113 DNA polymerase IV [dinB]. 1 350 37.457 T 25-04-2017 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 A4U88_RS17430 61bf9b7225f3051954b8a5313a63a34b 230 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 229 1.4E-70 T 25-04-2017 IPR004380 Aspartate racemase GO:0006520|GO:0016855 A4U88_RS17430 61bf9b7225f3051954b8a5313a63a34b 230 Gene3D G3DSA:3.40.50.1860 1 113 4.4E-43 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS17430 61bf9b7225f3051954b8a5313a63a34b 230 SUPERFAMILY SSF53681 1 114 2.42E-35 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS17430 61bf9b7225f3051954b8a5313a63a34b 230 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 224 1.8E-59 T 25-04-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS17430 61bf9b7225f3051954b8a5313a63a34b 230 Gene3D G3DSA:3.40.50.1860 114 216 5.4E-35 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS17430 61bf9b7225f3051954b8a5313a63a34b 230 SUPERFAMILY SSF53681 118 228 2.13E-32 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS09550 5875fce7d19a054c8d55af3ae7dd536c 141 PIRSF PIRSF006276 1 141 3.8E-41 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS09550 5875fce7d19a054c8d55af3ae7dd536c 141 SUPERFAMILY SSF52402 3 138 9.21E-22 T 25-04-2017 A4U88_RS09550 5875fce7d19a054c8d55af3ae7dd536c 141 Pfam PF00582 Universal stress protein family 3 138 8.2E-14 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS09550 5875fce7d19a054c8d55af3ae7dd536c 141 Gene3D G3DSA:3.40.50.620 3 138 1.6E-19 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 Pfam PF09383 NIL domain 263 328 9.0E-6 T 25-04-2017 IPR018449 NIL domain A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 SUPERFAMILY SSF55021 264 330 4.92E-5 T 25-04-2017 A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 SMART SM00382 31 219 1.5E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 Pfam PF00005 ABC transporter 22 170 3.7E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 Gene3D G3DSA:3.40.50.300 1 236 2.8E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 SUPERFAMILY SSF52540 1 237 4.6E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15745 76f095c491f186116fa3f9acf625f96e 339 Gene3D G3DSA:3.30.70.260 253 330 1.8E-5 T 25-04-2017 A4U88_RS23505 99dc4bda0ba2d2660d2cc13b51b4ffb1 298 Pfam PF02219 Methylenetetrahydrofolate reductase 17 291 1.1E-108 T 25-04-2017 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 A4U88_RS23505 99dc4bda0ba2d2660d2cc13b51b4ffb1 298 SUPERFAMILY SSF51730 22 293 1.16E-97 T 25-04-2017 IPR029041 FAD-linked oxidoreductase-like A4U88_RS23505 99dc4bda0ba2d2660d2cc13b51b4ffb1 298 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 1.1E-104 T 25-04-2017 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 A4U88_RS23505 99dc4bda0ba2d2660d2cc13b51b4ffb1 298 Gene3D G3DSA:3.20.20.220 10 294 2.6E-109 T 25-04-2017 IPR029041 FAD-linked oxidoreductase-like A4U88_RS20585 5719c37e59bd1a11d83e364561adccbe 97 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 6 88 6.2E-29 T 25-04-2017 IPR005228 Conserved hypothetical protein CHP00251 A4U88_RS20585 5719c37e59bd1a11d83e364561adccbe 97 SUPERFAMILY SSF69786 9 94 1.02E-31 T 25-04-2017 IPR003746 Protein of unknown function DUF167 A4U88_RS20585 5719c37e59bd1a11d83e364561adccbe 97 SMART SM01152 7 83 2.3E-38 T 25-04-2017 IPR003746 Protein of unknown function DUF167 A4U88_RS20585 5719c37e59bd1a11d83e364561adccbe 97 Gene3D G3DSA:3.30.1200.10 9 92 2.1E-30 T 25-04-2017 IPR003746 Protein of unknown function DUF167 A4U88_RS20585 5719c37e59bd1a11d83e364561adccbe 97 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 81 1.3E-26 T 25-04-2017 IPR003746 Protein of unknown function DUF167 A4U88_RS20585 5719c37e59bd1a11d83e364561adccbe 97 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 93 20.455 T 25-04-2017 IPR003746 Protein of unknown function DUF167 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 25-04-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 Pfam PF01872 RibD C-terminal domain 148 361 2.4E-56 T 25-04-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 365 3.6E-72 T 25-04-2017 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 Gene3D G3DSA:3.40.140.10 3 130 1.2E-35 T 25-04-2017 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 100 2.3E-20 T 25-04-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 SUPERFAMILY SSF53927 4 146 3.2E-49 T 25-04-2017 IPR016193 Cytidine deaminase-like GO:0003824 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 PIRSF PIRSF006769 1 369 6.5E-131 T 25-04-2017 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 Gene3D G3DSA:3.40.430.10 131 364 7.5E-69 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 362 1.1E-142 T 25-04-2017 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 A4U88_RS04820 f1f541298b2136dc77bd77aa379600ee 369 SUPERFAMILY SSF53597 145 364 1.2E-57 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS04450 43c522f462955b4496347627baf707ea 212 Pfam PF01810 LysE type translocator 19 209 4.1E-48 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS04450 43c522f462955b4496347627baf707ea 212 PIRSF PIRSF006324 5 212 6.3E-52 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS14260 52be0305d5d6346515cb8f77345ddacf 137 Gene3D G3DSA:1.10.1220.10 94 135 6.8E-5 T 25-04-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 A4U88_RS14260 52be0305d5d6346515cb8f77345ddacf 137 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 129 5.7E-43 T 25-04-2017 IPR031807 HicB-like antitoxin of toxin-antitoxin system A4U88_RS14260 52be0305d5d6346515cb8f77345ddacf 137 SUPERFAMILY SSF143100 1 63 5.36E-16 T 25-04-2017 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 PIRSF PIRSF004750 6 281 7.8E-126 T 25-04-2017 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 Gene3D G3DSA:3.30.1130.10 146 280 1.1E-55 T 25-04-2017 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 165.402 T 25-04-2017 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 1.9E-48 T 25-04-2017 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 1.4E-126 T 25-04-2017 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 SUPERFAMILY SSF55620 185 269 1.48E-10 T 25-04-2017 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 Pfam PF14489 QueF-like protein 195 267 3.6E-27 T 25-04-2017 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 A4U88_RS19335 2045835cd2cf11be8cef40a12cbcb9ee 281 Gene3D G3DSA:3.30.1130.10 21 138 1.3E-43 T 25-04-2017 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 PIRSF PIRSF002599 1 73 8.9E-23 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 SMART SM00357 3 67 5.3E-28 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 PRINTS PR00050 Cold shock protein signature 4 19 3.6E-16 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 PRINTS PR00050 Cold shock protein signature 40 58 3.6E-16 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 PRINTS PR00050 Cold shock protein signature 25 34 3.6E-16 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 3.3E-28 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 SUPERFAMILY SSF50249 1 66 5.78E-23 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 Gene3D G3DSA:2.40.50.140 1 64 5.1E-29 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 7.7E-42 T 25-04-2017 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 A4U88_RS08200 5071773ef0eee7c87b9971f2bde6bbfa 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 25-04-2017 IPR019844 Cold-shock conserved site A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 383 1.0E-24 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 Gene3D G3DSA:2.60.410.10 292 383 9.4E-32 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 SMART SM00936 292 383 4.4E-34 T 25-04-2017 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 SUPERFAMILY SSF69189 292 385 2.35E-25 T 25-04-2017 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 SUPERFAMILY SSF56601 9 292 1.24E-77 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 Gene3D G3DSA:3.40.710.10 40 291 1.7E-93 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 1.3E-16 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 1.3E-16 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 1.3E-16 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS05605 9657c137d8d9a529b70b7e63aad97164 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 7.8E-100 T 25-04-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 A4U88_RS04060 bab60f63a072d2e4f190fccf735abaf0 257 Gene3D G3DSA:3.60.110.10 1 251 2.8E-59 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS04060 bab60f63a072d2e4f190fccf735abaf0 257 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 137 157 - T 25-04-2017 IPR001110 Uncharacterised protein family UPF0012, conserved site A4U88_RS04060 bab60f63a072d2e4f190fccf735abaf0 257 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 2.6E-30 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS04060 bab60f63a072d2e4f190fccf735abaf0 257 SUPERFAMILY SSF56317 1 249 4.32E-60 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS02385 1ca112e342a0762b81f9ee0f0d2710e5 376 Gene3D G3DSA:3.40.640.10 1 248 2.5E-75 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS02385 1ca112e342a0762b81f9ee0f0d2710e5 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 2.2E-199 T 25-04-2017 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 A4U88_RS02385 1ca112e342a0762b81f9ee0f0d2710e5 376 PIRSF PIRSF000390 1 376 1.7E-111 T 25-04-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase A4U88_RS02385 1ca112e342a0762b81f9ee0f0d2710e5 376 SUPERFAMILY SSF53383 2 375 1.05E-100 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS02385 1ca112e342a0762b81f9ee0f0d2710e5 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 371 3.3E-87 T 25-04-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase A4U88_RS02385 1ca112e342a0762b81f9ee0f0d2710e5 376 Gene3D G3DSA:3.90.1150.10 251 375 1.8E-24 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 183 2.2E-15 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 SUPERFAMILY SSF56784 4 186 7.46E-48 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 1.4E-60 T 25-04-2017 IPR010976 Beta-phosphoglucomutase hydrolase A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 Gene3D G3DSA:3.40.50.1000 90 187 6.9E-40 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 Gene3D G3DSA:3.40.50.1000 4 18 6.9E-40 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 Gene3D G3DSA:1.10.150.240 19 71 1.5E-5 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS03795 03733037b5e9ebd174c731fd02abac2d 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 184 1.8E-29 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS15495 ca962d538fedc5e474a8ecab78f0dd51 1159 Pfam PF06761 Intracellular multiplication and human macrophage-killing 515 793 6.3E-61 T 25-04-2017 IPR009612 ImcF-related A4U88_RS15495 ca962d538fedc5e474a8ecab78f0dd51 1159 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 7 1157 2.3E-289 T 25-04-2017 IPR017731 Type VI secretion system, IcmF A4U88_RS15495 ca962d538fedc5e474a8ecab78f0dd51 1159 Pfam PF06744 Type VI secretion protein IcmF C-terminal 910 1106 1.1E-52 T 25-04-2017 IPR010623 Type VI secretion system IcmF, C-terminal A4U88_RS15495 ca962d538fedc5e474a8ecab78f0dd51 1159 Pfam PF14331 ImcF-related N-terminal domain 196 366 6.8E-30 T 25-04-2017 IPR025743 ImcF-related, N-terminal domain A4U88_RS15495 ca962d538fedc5e474a8ecab78f0dd51 1159 SUPERFAMILY SSF52540 119 265 3.87E-6 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 SUPERFAMILY SSF56672 1 236 1.42E-67 T 25-04-2017 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 Gene3D G3DSA:3.30.1490.100 248 351 2.6E-5 T 25-04-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 Pfam PF13438 Domain of unknown function (DUF4113) 370 419 1.4E-20 T 25-04-2017 IPR025188 Domain of unknown function DUF4113 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 SUPERFAMILY SSF100879 249 334 3.92E-5 T 25-04-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 Pfam PF00817 impB/mucB/samB family 5 149 1.2E-34 T 25-04-2017 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 Pfam PF11799 impB/mucB/samB family C-terminal domain 243 350 1.9E-10 T 25-04-2017 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 Gene3D G3DSA:3.30.70.270 66 157 9.8E-23 T 25-04-2017 A4U88_RS14805 3db6ef1abf9cd668ba6515fe547797e0 421 Gene3D G3DSA:1.10.150.20 168 237 4.2E-19 T 25-04-2017 A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.861 T 25-04-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 8.7E-167 T 25-04-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 2.1E-65 T 25-04-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 PIRSF PIRSF002936 1 302 1.3E-155 T 25-04-2017 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 Gene3D G3DSA:3.40.50.620 2 210 1.2E-62 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 Gene3D G3DSA:3.40.50.620 244 253 1.2E-62 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03610 93dfc87b9740d8c853a136aa544607f6 302 SUPERFAMILY SSF52402 6 209 2.71E-74 T 25-04-2017 A4U88_RS00955 f8b53c3e637c217f0cd8e2c35bdc2118 253 Pfam PF01048 Phosphorylase superfamily 21 244 3.5E-39 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS00955 f8b53c3e637c217f0cd8e2c35bdc2118 253 SUPERFAMILY SSF53167 6 250 1.96E-72 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS00955 f8b53c3e637c217f0cd8e2c35bdc2118 253 Gene3D G3DSA:3.40.50.1580 4 252 4.2E-82 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS00955 f8b53c3e637c217f0cd8e2c35bdc2118 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 1.3E-123 T 25-04-2017 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3 A4U88_RS00955 f8b53c3e637c217f0cd8e2c35bdc2118 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 25-04-2017 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS10280 9b89df0f3674cb1f00ea1d157b3f142c 415 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 6 405 8.5E-169 T 25-04-2017 IPR005219 Conserved hypothetical protein CHP00155 A4U88_RS10280 9b89df0f3674cb1f00ea1d157b3f142c 415 Pfam PF04403 Paraquat-inducible protein A 54 204 3.3E-39 T 25-04-2017 IPR007498 Paraquat-inducible protein A A4U88_RS10280 9b89df0f3674cb1f00ea1d157b3f142c 415 Pfam PF04403 Paraquat-inducible protein A 250 405 3.5E-47 T 25-04-2017 IPR007498 Paraquat-inducible protein A A4U88_RS10280 9b89df0f3674cb1f00ea1d157b3f142c 415 SUPERFAMILY SSF48695 216 248 3.7E-5 T 25-04-2017 IPR011031 Multihaem cytochrome A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 SUPERFAMILY SSF52540 3 240 1.22E-27 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 SUPERFAMILY SSF75138 229 353 7.85E-26 T 25-04-2017 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 Pfam PF07085 DRTGG domain 233 344 8.8E-29 T 25-04-2017 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 7.4E-136 T 25-04-2017 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 Gene3D G3DSA:3.40.1390.20 225 365 2.4E-31 T 25-04-2017 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 Gene3D G3DSA:3.40.50.10750 524 682 2.0E-67 T 25-04-2017 A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 Pfam PF13500 AAA domain 3 229 2.0E-51 T 25-04-2017 A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 Gene3D G3DSA:3.40.50.300 3 222 2.7E-9 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 PIRSF PIRSF006107 1 714 0.0 T 25-04-2017 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 5.3E-127 T 25-04-2017 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 A4U88_RS16915 e0f4aeb9b04a28e58b1a5411ebb90a98 719 SUPERFAMILY SSF53659 392 709 6.58E-94 T 25-04-2017 A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 SUPERFAMILY SSF51206 8 136 2.49E-35 T 25-04-2017 IPR018490 Cyclic nucleotide-binding-like A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 SMART SM00100 2 122 7.6E-27 T 25-04-2017 IPR000595 Cyclic nucleotide-binding domain A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 Gene3D G3DSA:2.60.120.10 6 143 3.1E-44 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 Gene3D G3DSA:1.10.10.10 144 207 1.1E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 25-04-2017 IPR018488 Cyclic nucleotide-binding, conserved site A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.7E-15 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 25-04-2017 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 SMART SM00419 160 208 4.5E-17 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.4E-24 T 25-04-2017 IPR000595 Cyclic nucleotide-binding domain A4U88_RS22505 8cb982b4321991be5f028d131cda8f13 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 25-04-2017 IPR018488 Cyclic nucleotide-binding, conserved site A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 Gene3D G3DSA:3.80.30.20 372 639 7.3E-48 T 25-04-2017 IPR023404 Radical SAM, alpha/beta horseshoe A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 29 642 7.4E-266 T 25-04-2017 IPR022946 Uncharacterised protein family UPF0313 A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 378 398 - T 25-04-2017 IPR020612 Methylthiotransferase, conserved site GO:0051539 A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 Pfam PF11842 Domain of unknown function (DUF3362) 592 698 1.1E-42 T 25-04-2017 IPR024560 Uncharacterised protein family UPF0313, C-terminal A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 28 715 49.061 T 25-04-2017 IPR022946 Uncharacterised protein family UPF0313 A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 SMART SM00729 374 624 1.2E-4 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 Pfam PF04055 Radical SAM superfamily 378 583 1.4E-19 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 Pfam PF08497 Radical SAM N-terminal 29 377 1.6E-147 T 25-04-2017 IPR013704 Uncharacterised protein family UPF0313, N-terminal A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 SUPERFAMILY SSF102114 355 438 1.96E-11 T 25-04-2017 A4U88_RS20820 57c83b3454754bede95aed2afd988d7c 722 SUPERFAMILY SSF102114 468 654 1.96E-11 T 25-04-2017 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.9E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.9E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.9E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 Pfam PF03466 LysR substrate binding domain 86 288 1.3E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 Gene3D G3DSA:1.10.10.10 1 85 1.3E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.3E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 SUPERFAMILY SSF53850 88 291 4.96E-39 T 25-04-2017 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 Gene3D G3DSA:3.40.190.10 90 178 6.4E-17 T 25-04-2017 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 Gene3D G3DSA:3.40.190.10 179 260 5.5E-16 T 25-04-2017 A4U88_RS00935 7318d825e78f6207d3dfcee583d5abc0 314 SUPERFAMILY SSF46785 1 109 5.44E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Pfam PF07732 Multicopper oxidase 53 166 1.5E-23 T 25-04-2017 IPR011707 Multicopper oxidase, type 3 GO:0005507 A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 SUPERFAMILY SSF49503 3 165 1.52E-22 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Pfam PF07731 Multicopper oxidase 356 469 3.1E-14 T 25-04-2017 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 21 7.3E-4 T 25-04-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Gene3D G3DSA:2.60.40.420 32 171 2.0E-19 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Gene3D G3DSA:2.60.40.420 352 469 3.8E-13 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Gene3D G3DSA:2.60.40.420 172 287 4.7E-33 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Pfam PF00394 Multicopper oxidase 208 289 3.6E-4 T 25-04-2017 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 468 58.276 T 25-04-2017 IPR026589 Cell division protein FtsP GO:0043093 A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 SUPERFAMILY SSF49503 172 288 4.61E-32 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20855 54ed0cb4db0f032650d6aedca1e08285 471 SUPERFAMILY SSF49503 315 467 7.33E-18 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 SUPERFAMILY SSF51556 50 345 3.15E-25 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 3 378 3.8E-155 T 25-04-2017 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 Gene3D G3DSA:3.20.20.140 288 377 2.8E-11 T 25-04-2017 A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 PIRSF PIRSF038971 1 378 9.3E-162 T 25-04-2017 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399 A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 SUPERFAMILY SSF51338 2 50 1.86E-9 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 SUPERFAMILY SSF51338 345 377 1.86E-9 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 Gene3D G3DSA:2.30.40.10 1 91 8.8E-8 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS02100 f0fc1e7844c08b07ed99b37252608caf 378 Pfam PF07969 Amidohydrolase family 214 378 4.6E-11 T 25-04-2017 IPR013108 Amidohydrolase 3 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 SMART SM00382 486 653 1.8E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 SMART SM00382 205 349 2.1E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 1.2E-36 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 1.2E-36 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 1.2E-36 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 1.2E-36 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 SUPERFAMILY SSF52540 168 424 7.99E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 652 732 8.4E-24 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 SMART SM01086 652 743 6.3E-35 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Gene3D G3DSA:1.10.1780.10 1 141 2.1E-45 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 341 3.0E-13 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 25-04-2017 IPR028299 ClpA/B, conserved site 2 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Gene3D G3DSA:3.40.50.300 168 349 2.7E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Gene3D G3DSA:3.40.50.300 442 662 5.8E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Gene3D G3DSA:1.10.8.60 663 750 2.3E-30 T 25-04-2017 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 5.0E-15 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 25-04-2017 IPR018368 ClpA/B, conserved site 1 GO:0005524 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 733 0.0 T 25-04-2017 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Gene3D G3DSA:1.10.8.60 351 434 1.5E-30 T 25-04-2017 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 SUPERFAMILY SSF52540 436 742 8.56E-77 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 SUPERFAMILY SSF81923 1 141 1.96E-58 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS08210 6afab4db6f9c42de970ce56a88661c7b 759 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 646 1.1E-49 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS00120 4475f1cb2f2f51a53af6cd9929f2f8e5 188 Pfam PF03352 Methyladenine glycosylase 8 183 2.7E-82 T 25-04-2017 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 A4U88_RS00120 4475f1cb2f2f51a53af6cd9929f2f8e5 188 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 184 1.2E-86 T 25-04-2017 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 A4U88_RS00120 4475f1cb2f2f51a53af6cd9929f2f8e5 188 Gene3D G3DSA:1.10.340.30 4 184 6.1E-89 T 25-04-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 A4U88_RS00120 4475f1cb2f2f51a53af6cd9929f2f8e5 188 SUPERFAMILY SSF48150 5 185 1.39E-82 T 25-04-2017 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 SUPERFAMILY SSF54423 22 81 6.67E-18 T 25-04-2017 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 Gene3D G3DSA:3.40.30.10 99 233 4.3E-50 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 Pfam PF13098 Thioredoxin-like domain 105 227 2.2E-29 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 SUPERFAMILY SSF52833 88 230 1.18E-41 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 Gene3D G3DSA:3.10.450.70 22 82 3.2E-25 T 25-04-2017 IPR009094 Disulphide bond isomerase, DsbC, N-terminal A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS19850 a3e3dfdd0e79674bb03000dbc63794f3 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 77 3.5E-15 T 25-04-2017 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 282 489 1.5E-40 T 25-04-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 262 6.8E-32 T 25-04-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 TIGRFAM TIGR01315 5C_CHO_kinase: FGGY-family pentulose kinase 5 538 1.5E-210 T 25-04-2017 IPR006003 Carbohydrate kinase, FGGY-related GO:0005975|GO:0016773 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 Gene3D G3DSA:3.30.420.40 2 263 4.4E-71 T 25-04-2017 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 PIRSF PIRSF000538 2 543 2.4E-74 T 25-04-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 SUPERFAMILY SSF53067 280 532 3.58E-53 T 25-04-2017 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 Gene3D G3DSA:3.30.420.40 279 538 1.7E-60 T 25-04-2017 A4U88_RS23165 8d4ee8f52b83cf853c4487dd3dfa707e 545 SUPERFAMILY SSF53067 4 263 3.05E-61 T 25-04-2017 A4U88_RS11790 4d7bf3961c722fdfa6e79b4b65e357d4 251 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 7 240 1.2E-117 T 25-04-2017 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 A4U88_RS11790 4d7bf3961c722fdfa6e79b4b65e357d4 251 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 251 140.051 T 25-04-2017 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 A4U88_RS11790 4d7bf3961c722fdfa6e79b4b65e357d4 251 SUPERFAMILY SSF48613 5 249 7.41E-78 T 25-04-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 A4U88_RS11790 4d7bf3961c722fdfa6e79b4b65e357d4 251 Pfam PF03070 TENA/THI-4/PQQC family 15 223 1.3E-63 T 25-04-2017 IPR004305 Thiaminase-2/PQQC A4U88_RS11790 4d7bf3961c722fdfa6e79b4b65e357d4 251 Gene3D G3DSA:1.20.910.10 3 251 1.7E-125 T 25-04-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 1.1E-262 T 25-04-2017 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 PIRSF PIRSF002808 5 449 6.4E-172 T 25-04-2017 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 SUPERFAMILY SSF103473 14 441 1.83E-84 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 Gene3D G3DSA:1.20.1250.20 246 446 1.9E-46 T 25-04-2017 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 25-04-2017 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-3229133|Reactome: R-HSA-70153 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 Pfam PF07690 Major Facilitator Superfamily 34 400 9.9E-45 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 Gene3D G3DSA:1.20.1250.20 23 224 5.8E-54 T 25-04-2017 A4U88_RS00750 69ed327d6d2910c9c75dc668da7fb76e 450 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 2.3E-168 T 25-04-2017 A4U88_RS19120 22ad0407290db9ff7c3cb6192ce8a895 235 SUPERFAMILY SSF118196 1 229 4.58E-84 T 25-04-2017 IPR023370 TsaA-like domain A4U88_RS19120 22ad0407290db9ff7c3cb6192ce8a895 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 25-04-2017 IPR023368 Uncharacterised protein family UPF0066, conserved site A4U88_RS19120 22ad0407290db9ff7c3cb6192ce8a895 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 1.2E-39 T 25-04-2017 IPR023370 TsaA-like domain A4U88_RS19120 22ad0407290db9ff7c3cb6192ce8a895 235 Gene3D G3DSA:2.40.30.70 5 156 2.3E-50 T 25-04-2017 IPR023370 TsaA-like domain A4U88_RS19120 22ad0407290db9ff7c3cb6192ce8a895 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 149 5.4E-56 T 25-04-2017 IPR023370 TsaA-like domain A4U88_RS14035 5281f7a094ff2382299e9046ca1dcb3e 428 TIGRFAM TIGR02304 aden_form_hyp: putative adenylate-forming enzyme 3 425 7.1E-174 T 25-04-2017 IPR012685 Conserved hypothetical protein CHP02304, F390 synthetase-related A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.8E-82 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82693 146 191 5.62E-21 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82693 277 333 5.62E-21 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82866 799 1025 2.49E-45 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Gene3D G3DSA:1.10.3850.10 808 1024 1.8E-55 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82714 192 275 1.96E-16 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Gene3D G3DSA:1.20.1640.10 294 509 1.8E-54 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82693 565 662 7.59E-17 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1036 34.984 T 25-04-2017 IPR022831 Multidrug resistance protein MdtB A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82693 49 142 2.04E-22 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Gene3D G3DSA:3.30.70.1430 49 150 2.8E-28 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Gene3D G3DSA:3.30.70.1430 568 657 2.3E-12 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Gene3D G3DSA:3.30.2090.10 192 275 1.9E-17 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82866 299 498 1.96E-45 T 25-04-2017 A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 SUPERFAMILY SSF82714 719 802 5.49E-17 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS18090 b4655ec64ca7b0ac6ef6d16f948bc175 1039 Gene3D G3DSA:3.30.2090.10 719 804 1.2E-17 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 PRINTS PR00762 Chloride channel signature 116 135 8.3E-25 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 PRINTS PR00762 Chloride channel signature 330 350 8.3E-25 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 PRINTS PR00762 Chloride channel signature 383 402 8.3E-25 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 PRINTS PR00762 Chloride channel signature 365 381 8.3E-25 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 PRINTS PR00762 Chloride channel signature 166 185 8.3E-25 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 Pfam PF00654 Voltage gated chloride channel 74 415 4.9E-75 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 Gene3D G3DSA:1.10.3080.10 11 425 5.5E-77 T 25-04-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS11175 fadec39d9fb2f880ae634307a4a6ad05 433 SUPERFAMILY SSF81340 3 425 1.44E-87 T 25-04-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS12425 10ff3a7ba914b3a49b61d1babc60a7cb 237 Gene3D G3DSA:2.40.10.220 109 236 3.7E-24 T 25-04-2017 A4U88_RS12425 10ff3a7ba914b3a49b61d1babc60a7cb 237 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 4 235 24.915 T 25-04-2017 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 A4U88_RS12425 10ff3a7ba914b3a49b61d1babc60a7cb 237 Gene3D G3DSA:2.30.110.10 13 108 9.4E-9 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS12425 10ff3a7ba914b3a49b61d1babc60a7cb 237 Pfam PF07238 PilZ domain 108 225 1.5E-9 T 25-04-2017 IPR009875 PilZ domain GO:0035438 A4U88_RS12425 10ff3a7ba914b3a49b61d1babc60a7cb 237 Pfam PF07317 Flagellar regulator YcgR 9 105 2.9E-15 T 25-04-2017 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 Gene3D G3DSA:3.40.50.1000 1 207 1.4E-23 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 1 222 42.259 T 25-04-2017 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 196 4.6E-6 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 191 204 9.8E-8 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 9.8E-8 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 114 127 9.8E-8 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 164 184 9.8E-8 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 SUPERFAMILY SSF56784 1 220 2.92E-61 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04075 cf409a6cce6354121876aa4e68dd5c46 229 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2 221 2.3E-90 T 25-04-2017 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 A4U88_RS02910 8717cfe0d77ef303a6d600e3785875b3 325 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 7.0E-23 T 25-04-2017 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 A4U88_RS02910 8717cfe0d77ef303a6d600e3785875b3 325 Pfam PF00702 haloacid dehalogenase-like hydrolase 113 285 3.0E-15 T 25-04-2017 A4U88_RS02910 8717cfe0d77ef303a6d600e3785875b3 325 Gene3D G3DSA:1.10.150.210 127 176 8.3E-29 T 25-04-2017 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 A4U88_RS02910 8717cfe0d77ef303a6d600e3785875b3 325 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 1.3E-89 T 25-04-2017 A4U88_RS02910 8717cfe0d77ef303a6d600e3785875b3 325 SUPERFAMILY SSF56784 112 316 1.63E-47 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS02910 8717cfe0d77ef303a6d600e3785875b3 325 Gene3D G3DSA:3.40.50.1000 177 305 2.7E-38 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS02175 845a0c8e52131d17cfb648ae4d5a837a 174 SUPERFAMILY SSF52218 1 173 2.02E-44 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS02175 845a0c8e52131d17cfb648ae4d5a837a 174 Pfam PF02525 Flavodoxin-like fold 3 165 2.8E-40 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS02175 845a0c8e52131d17cfb648ae4d5a837a 174 Gene3D G3DSA:3.40.50.360 1 173 9.9E-43 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 Pfam PF01791 DeoC/LacD family aldolase 12 244 2.7E-46 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 SUPERFAMILY SSF51569 6 245 2.2E-81 T 25-04-2017 A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 PIRSF PIRSF001357 5 255 8.4E-79 T 25-04-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 259 53.255 T 25-04-2017 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 SMART SM01133 10 246 1.3E-81 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 Gene3D G3DSA:3.20.20.70 5 252 2.7E-93 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS02880 bd90ca31e5f04cf2d4edff62e487dd3e 259 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 232 1.6E-79 T 25-04-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 Gene3D G3DSA:2.40.50.140 4 68 8.7E-32 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 25-04-2017 IPR019844 Cold-shock conserved site A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 PIRSF PIRSF002599 1 70 1.1E-26 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 SMART SM00357 6 70 1.9E-30 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 SUPERFAMILY SSF50249 2 69 2.1E-25 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 PRINTS PR00050 Cold shock protein signature 7 22 2.4E-17 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 PRINTS PR00050 Cold shock protein signature 43 61 2.4E-17 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 PRINTS PR00050 Cold shock protein signature 28 37 2.4E-17 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS15185 9e155a325bb4310be26b2bc59bfe56c1 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 69 9.7E-33 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 PIRSF PIRSF000456 5 262 1.4E-108 T 25-04-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.2E-6 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 52 9.7E-9 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.5E-110 T 25-04-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 4.3E-30 T 25-04-2017 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 Gene3D G3DSA:2.160.10.10 4 194 6.8E-48 T 25-04-2017 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 SUPERFAMILY SSF51161 2 262 8.07E-79 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 153 181 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 Gene3D G3DSA:1.20.1180.10 197 262 1.9E-27 T 25-04-2017 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS19215 96c6fcfe6eb90169198a82a850d835c4 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 47.687 T 25-04-2017 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 167 236 9.9E-20 T 25-04-2017 IPR006260 TonB, C-terminal GO:0006810 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 164 234 3.6E-18 T 25-04-2017 IPR006260 TonB, C-terminal GO:0006810 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 199 216 2.8E-37 T 25-04-2017 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 180 198 2.8E-37 T 25-04-2017 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 96 106 2.8E-37 T 25-04-2017 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 PRINTS PR01374 Gram-negative bacterial tonB protein signature 159 180 2.8E-37 T 25-04-2017 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 Gene3D G3DSA:3.30.1150.10 162 237 5.5E-13 T 25-04-2017 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 Pfam PF16031 TonB N-terminal region 32 161 7.7E-26 T 25-04-2017 A4U88_RS13075 f5817afcb2235d2900f696f429bc689f 242 SUPERFAMILY SSF74653 157 233 4.97E-21 T 25-04-2017 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 3.1E-27 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 3.1E-27 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 3.1E-27 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 3.1E-27 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 3.1E-27 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 459 1.4E-201 T 25-04-2017 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Gene3D G3DSA:1.10.1160.10 233 315 9.6E-36 T 25-04-2017 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 2.8E-116 T 25-04-2017 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 SUPERFAMILY SSF48163 299 461 1.57E-45 T 25-04-2017 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Gene3D G3DSA:1.10.10.350 363 461 3.1E-31 T 25-04-2017 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 SUPERFAMILY SSF52374 3 298 6.17E-113 T 25-04-2017 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Gene3D G3DSA:3.40.50.620 181 230 2.6E-53 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Gene3D G3DSA:3.40.50.620 2 67 2.6E-53 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 461 34.223 T 25-04-2017 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 A4U88_RS17485 acf19a5dc288a0e5038846257e77cedb 471 Gene3D G3DSA:3.90.800.10 68 180 4.8E-40 T 25-04-2017 A4U88_RS02335 bd3b3b1a2d3fb8bbb524931c1349a5b0 305 Pfam PF04471 Restriction endonuclease 164 281 3.9E-35 T 25-04-2017 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 A4U88_RS02335 bd3b3b1a2d3fb8bbb524931c1349a5b0 305 Gene3D G3DSA:3.40.1350.10 161 283 3.8E-17 T 25-04-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 A4U88_RS02335 bd3b3b1a2d3fb8bbb524931c1349a5b0 305 Pfam PF14338 Mrr N-terminal domain 6 91 2.7E-21 T 25-04-2017 IPR025745 Restriction system protein Mrr-like N-terminal domain A4U88_RS02335 bd3b3b1a2d3fb8bbb524931c1349a5b0 305 SUPERFAMILY SSF52980 170 284 1.45E-18 T 25-04-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 Gene3D G3DSA:3.40.50.2300 6 128 1.6E-36 T 25-04-2017 A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 Gene3D G3DSA:1.10.10.10 129 228 4.8E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 SMART SM00862 151 227 4.2E-22 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 SUPERFAMILY SSF52172 5 175 3.22E-38 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 Pfam PF00072 Response regulator receiver domain 8 117 3.2E-27 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 SMART SM00448 6 116 6.7E-36 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS05855 cf51c407937a0b67a8747a4742c08116 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 227 3.1E-21 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS21690 4c240dd430bca6dde0999b9476993563 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 9.6E-30 T 25-04-2017 IPR010398 Protein of unknown function DUF997 A4U88_RS21690 4c240dd430bca6dde0999b9476993563 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 79 3.0E-19 T 25-04-2017 IPR010398 Protein of unknown function DUF997 A4U88_RS16400 dd7e629faaacd9ddaa050fc28839ee77 236 Gene3D G3DSA:1.20.144.10 26 208 6.8E-12 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS16400 dd7e629faaacd9ddaa050fc28839ee77 236 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 42.334 T 25-04-2017 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 A4U88_RS16400 dd7e629faaacd9ddaa050fc28839ee77 236 SUPERFAMILY SSF48317 5 213 1.83E-21 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS16400 dd7e629faaacd9ddaa050fc28839ee77 236 Pfam PF01569 PAP2 superfamily 137 208 2.3E-7 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS16400 dd7e629faaacd9ddaa050fc28839ee77 236 SMART SM00014 95 210 2.5E-14 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS07200 bfd54cdcf47d7243ff20e99529591845 240 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS07200 bfd54cdcf47d7243ff20e99529591845 240 SUPERFAMILY SSF52540 1 235 2.8E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07200 bfd54cdcf47d7243ff20e99529591845 240 SMART SM00382 26 213 1.6E-16 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07200 bfd54cdcf47d7243ff20e99529591845 240 Pfam PF00005 ABC transporter 17 165 2.4E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS07200 bfd54cdcf47d7243ff20e99529591845 240 Gene3D G3DSA:3.40.50.300 1 237 8.7E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07200 bfd54cdcf47d7243ff20e99529591845 240 PIRSF PIRSF039085 1 240 3.7E-107 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 60 103 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 SUPERFAMILY SSF46689 59 114 1.03E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 Pfam PF06445 GyrI-like small molecule binding domain 130 285 9.3E-33 T 25-04-2017 IPR029442 GyrI-like small molecule binding domain A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 Pfam PF12833 Helix-turn-helix domain 29 109 1.7E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 SUPERFAMILY SSF46689 7 57 1.93E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 SMART SM00342 23 107 1.1E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 9.7E-7 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 9.7E-7 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 Gene3D G3DSA:1.10.10.60 5 59 2.6E-17 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 Gene3D G3DSA:3.20.80.10 130 285 3.0E-42 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 Gene3D G3DSA:1.10.10.60 60 119 5.2E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 SUPERFAMILY SSF55136 130 285 8.55E-36 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS19745 123daf3910d967b2a1162816965671ce 285 SMART SM00871 130 285 1.5E-37 T 25-04-2017 IPR010499 Bacterial transcription activator, effector binding A4U88_RS20850 84281232f291edbef477181ea625f992 303 Pfam PF03466 LysR substrate binding domain 99 302 2.6E-39 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20850 84281232f291edbef477181ea625f992 303 Gene3D G3DSA:3.40.190.10 100 189 2.9E-23 T 25-04-2017 A4U88_RS20850 84281232f291edbef477181ea625f992 303 Gene3D G3DSA:1.10.10.10 13 98 8.5E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20850 84281232f291edbef477181ea625f992 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 74 1.2E-22 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20850 84281232f291edbef477181ea625f992 303 SUPERFAMILY SSF46785 14 98 2.78E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20850 84281232f291edbef477181ea625f992 303 SUPERFAMILY SSF53850 100 302 2.17E-34 T 25-04-2017 A4U88_RS20850 84281232f291edbef477181ea625f992 303 Gene3D G3DSA:3.40.190.10 190 277 3.7E-24 T 25-04-2017 A4U88_RS20850 84281232f291edbef477181ea625f992 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 41 7.8E-11 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20850 84281232f291edbef477181ea625f992 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 62 7.8E-11 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20850 84281232f291edbef477181ea625f992 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 51 7.8E-11 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 42 310 8.9E-104 T 25-04-2017 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 Pfam PF01189 16S rRNA methyltransferase RsmB/F 119 309 7.4E-50 T 25-04-2017 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 Gene3D G3DSA:3.40.50.150 102 310 8.9E-60 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 SUPERFAMILY SSF53335 10 310 1.84E-67 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 421 470 7.1E-11 T 25-04-2017 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 188 199 - T 25-04-2017 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 239 255 5.4E-28 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 189 201 5.4E-28 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 91 105 5.4E-28 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 122 132 5.4E-28 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 293 310 5.4E-28 T 25-04-2017 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 7 475 63.102 T 25-04-2017 IPR023545 rRNA small subunit methyltransferase F GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS10270 00286e2b829e720f9eb2b9e506ec730e 478 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 9 105 2.4E-27 T 25-04-2017 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 A4U88_RS19685 70315205217a1323a7a9c1664cca5cae 221 Pfam PF01323 DSBA-like thioredoxin domain 88 193 1.6E-9 T 25-04-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 A4U88_RS19685 70315205217a1323a7a9c1664cca5cae 221 Gene3D G3DSA:3.40.30.10 50 214 4.0E-29 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19685 70315205217a1323a7a9c1664cca5cae 221 SUPERFAMILY SSF52833 51 202 1.04E-24 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS22165 a87b45fddf29bdd3975ed01261db3ca6 373 Gene3D G3DSA:3.40.50.450 109 252 5.7E-12 T 25-04-2017 A4U88_RS22165 a87b45fddf29bdd3975ed01261db3ca6 373 Pfam PF02481 DNA recombination-mediator protein A 72 274 1.4E-74 T 25-04-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 A4U88_RS22165 a87b45fddf29bdd3975ed01261db3ca6 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 65 282 8.0E-79 T 25-04-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 A4U88_RS22165 a87b45fddf29bdd3975ed01261db3ca6 373 SUPERFAMILY SSF102405 80 283 2.29E-43 T 25-04-2017 A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 Pfam PF01381 Helix-turn-helix 13 64 6.0E-13 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 SMART SM00530 11 66 1.7E-13 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 Gene3D G3DSA:1.10.260.40 6 73 1.7E-20 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 Gene3D G3DSA:2.60.120.10 75 183 2.5E-22 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 SUPERFAMILY SSF51182 51 183 6.03E-29 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 SUPERFAMILY SSF47413 6 72 5.91E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10065 281b63c7dea806ec85cf085900f0028e 185 Pfam PF07883 Cupin domain 111 178 9.0E-16 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 138 3.9E-23 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 SUPERFAMILY SSF50129 3 180 1.89E-46 T 25-04-2017 IPR011032 GroES-like A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 SMART SM00829 12 339 3.1E-7 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 SUPERFAMILY SSF51735 146 313 5.37E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 Pfam PF00107 Zinc-binding dehydrogenase 183 305 6.8E-18 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 Gene3D G3DSA:3.40.50.720 177 265 8.2E-18 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 Gene3D G3DSA:3.90.180.10 2 176 8.7E-56 T 25-04-2017 IPR011032 GroES-like A4U88_RS10195 def6e3e630370c0ceace4b83b233c5e5 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 SMART SM00388 220 283 2.5E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 SUPERFAMILY SSF47384 204 283 6.47E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 Pfam PF00672 HAMP domain 152 215 3.5E-13 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 SMART SM00387 329 439 1.4E-27 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 SMART SM00304 164 219 6.3E-12 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 436 5.7E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 Gene3D G3DSA:3.30.565.10 288 437 4.3E-36 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 SUPERFAMILY SSF158472 165 215 2.48E-8 T 25-04-2017 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 SUPERFAMILY SSF55874 273 437 2.75E-34 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 417 1.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 394 1.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 380 1.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 Pfam PF00512 His Kinase A (phospho-acceptor) domain 221 282 2.7E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17625 4ba4ac16fddfeeb9d6c37a6a657e509f 440 Gene3D G3DSA:1.10.287.130 210 279 3.1E-13 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS20250 81fbe456e3a042a8b59198ff7a547783 174 SUPERFAMILY SSF51182 28 168 1.82E-22 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS20250 81fbe456e3a042a8b59198ff7a547783 174 Gene3D G3DSA:2.60.120.10 31 166 8.1E-19 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS20250 81fbe456e3a042a8b59198ff7a547783 174 Pfam PF07883 Cupin domain 81 148 1.1E-11 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS20115 00ec172821140ff08992174ac5267bad 286 Gene3D G3DSA:3.20.20.150 5 278 2.2E-52 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS20115 00ec172821140ff08992174ac5267bad 286 Pfam PF01261 Xylose isomerase-like TIM barrel 23 234 9.5E-37 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS20115 00ec172821140ff08992174ac5267bad 286 SUPERFAMILY SSF51658 11 278 1.44E-58 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS20115 00ec172821140ff08992174ac5267bad 286 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 2 286 3.5E-147 T 25-04-2017 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 A4U88_RS19515 c0690710026f70931c70505d0cb77351 114 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 104 1.5E-23 T 25-04-2017 IPR009241 Toxin HigB-like A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 9.7E-82 T 25-04-2017 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 25-04-2017 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 103.425 T 25-04-2017 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Pfam PF13662 Toprim domain 82 172 1.1E-22 T 25-04-2017 IPR006171 Toprim domain A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 SMART SM00493 81 166 1.5E-19 T 25-04-2017 IPR006171 Toprim domain A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 Pfam PF02132 RecR protein 41 77 2.2E-15 T 25-04-2017 IPR023628 Recombination protein RecR, C4-type zinc finger A4U88_RS05180 0675aa3f16d9d44a04b6eb7bfc4d9266 201 SUPERFAMILY SSF111304 2 199 4.32E-71 T 25-04-2017 IPR023627 Recombination protein RecR A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 Gene3D G3DSA:3.40.190.10 38 119 3.9E-48 T 25-04-2017 A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 Gene3D G3DSA:3.40.190.10 223 265 3.9E-48 T 25-04-2017 A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 43 261 1.5E-72 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 SUPERFAMILY SSF53850 17 264 1.28E-76 T 25-04-2017 A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 65 78 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 Gene3D G3DSA:3.40.190.10 120 222 1.2E-31 T 25-04-2017 A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 SMART SM00062 42 263 5.9E-86 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS14275 bc9b05916edac41645948ca4656e1a8a 266 SMART SM00079 42 262 4.8E-5 T 25-04-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 A4U88_RS20655 90d8f034e4b021632ecd3bddd2154a92 160 SUPERFAMILY SSF141452 2 159 1.44E-48 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS20655 90d8f034e4b021632ecd3bddd2154a92 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 135 1.2E-36 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS20655 90d8f034e4b021632ecd3bddd2154a92 160 Gene3D G3DSA:2.30.110.20 1 159 8.4E-60 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS20655 90d8f034e4b021632ecd3bddd2154a92 160 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 136 3.7E-18 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Pfam PF13180 PDZ domain 294 383 2.0E-14 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Gene3D G3DSA:2.30.42.10 411 475 1.2E-18 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 476 2.5E-163 T 25-04-2017 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Gene3D G3DSA:2.40.10.10 182 293 3.9E-43 T 25-04-2017 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 PRINTS PR00834 HtrA/DegQ protease family signature 246 263 2.0E-59 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 PRINTS PR00834 HtrA/DegQ protease family signature 148 168 2.0E-59 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 PRINTS PR00834 HtrA/DegQ protease family signature 127 139 2.0E-59 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 PRINTS PR00834 HtrA/DegQ protease family signature 224 241 2.0E-59 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 PRINTS PR00834 HtrA/DegQ protease family signature 189 213 2.0E-59 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 PRINTS PR00834 HtrA/DegQ protease family signature 332 344 2.0E-59 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 SMART SM00228 399 471 1.4E-10 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 SMART SM00228 292 374 2.9E-11 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Gene3D G3DSA:2.40.10.10 37 181 1.0E-34 T 25-04-2017 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 SUPERFAMILY SSF50494 1 58 5.71E-62 T 25-04-2017 IPR009003 Peptidase S1, PA clan A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 SUPERFAMILY SSF50494 114 301 5.71E-62 T 25-04-2017 IPR009003 Peptidase S1, PA clan A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Pfam PF13365 Trypsin-like peptidase domain 117 253 3.0E-30 T 25-04-2017 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 394 468 1.1E-11 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 SUPERFAMILY SSF50156 408 475 4.21E-16 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 Gene3D G3DSA:2.30.42.10 294 391 9.3E-28 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS03505 a691f8905528bee70dbc708ae34e58c8 479 SUPERFAMILY SSF50156 274 383 1.73E-21 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS17620 9ba5140bc2c4808a7b2076e58a91c9d3 169 Gene3D G3DSA:2.70.70.10 14 167 4.5E-60 T 25-04-2017 A4U88_RS17620 9ba5140bc2c4808a7b2076e58a91c9d3 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS17620 9ba5140bc2c4808a7b2076e58a91c9d3 169 SUPERFAMILY SSF51261 12 167 1.22E-55 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS17620 9ba5140bc2c4808a7b2076e58a91c9d3 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 3.3E-50 T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS17620 9ba5140bc2c4808a7b2076e58a91c9d3 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 8.5E-49 T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS08615 14042bc4b2ae51aadac2ecabcd8e4df4 109 Pfam PF04358 DsrC like protein 3 109 3.9E-46 T 25-04-2017 IPR007453 Sulphur transfer protein DsrC/TusE A4U88_RS08615 14042bc4b2ae51aadac2ecabcd8e4df4 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 4.0E-51 T 25-04-2017 IPR007453 Sulphur transfer protein DsrC/TusE A4U88_RS08615 14042bc4b2ae51aadac2ecabcd8e4df4 109 PIRSF PIRSF006223 2 109 2.4E-46 T 25-04-2017 IPR007453 Sulphur transfer protein DsrC/TusE A4U88_RS08615 14042bc4b2ae51aadac2ecabcd8e4df4 109 SUPERFAMILY SSF69721 2 109 1.44E-41 T 25-04-2017 IPR025526 DsrC-like domain A4U88_RS08615 14042bc4b2ae51aadac2ecabcd8e4df4 109 Gene3D G3DSA:3.30.1420.10 1 37 1.6E-12 T 25-04-2017 A4U88_RS08615 14042bc4b2ae51aadac2ecabcd8e4df4 109 Gene3D G3DSA:1.10.10.370 39 109 1.0E-39 T 25-04-2017 A4U88_RS00510 fb6483f3693d3c2ef619cefa3cb0e52c 500 Pfam PF00675 Insulinase (Peptidase family M16) 52 164 5.4E-11 T 25-04-2017 IPR011765 Peptidase M16, N-terminal A4U88_RS00510 fb6483f3693d3c2ef619cefa3cb0e52c 500 SUPERFAMILY SSF63411 29 240 5.59E-25 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS00510 fb6483f3693d3c2ef619cefa3cb0e52c 500 Pfam PF05193 Peptidase M16 inactive domain 201 378 5.2E-19 T 25-04-2017 IPR007863 Peptidase M16, C-terminal A4U88_RS00510 fb6483f3693d3c2ef619cefa3cb0e52c 500 SUPERFAMILY SSF63411 265 467 1.83E-7 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS00510 fb6483f3693d3c2ef619cefa3cb0e52c 500 Gene3D G3DSA:3.30.830.10 23 252 3.6E-20 T 25-04-2017 IPR011237 Peptidase M16 domain GO:0046872 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.412 T 25-04-2017 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 Gene3D G3DSA:3.10.290.10 102 190 1.5E-32 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 Gene3D G3DSA:1.10.1050.10 1 101 3.4E-42 T 25-04-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 SMART SM01390 3 95 3.8E-50 T 25-04-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 7.2E-87 T 25-04-2017 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 25-04-2017 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 Pfam PF01479 S4 domain 97 143 2.3E-18 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 SMART SM00363 96 160 5.3E-20 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 SUPERFAMILY SSF55174 3 206 8.9E-73 T 25-04-2017 A4U88_RS22225 4157208684c94686d88d743bda4a1b43 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 4.0E-31 T 25-04-2017 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 A4U88_RS04370 a993e81aa692f946d419528340057913 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 9 88 1.3E-34 T 25-04-2017 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 A4U88_RS04370 a993e81aa692f946d419528340057913 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 88 4.7E-13 T 25-04-2017 IPR008792 Coenzyme PQQ synthesis D A4U88_RS04370 a993e81aa692f946d419528340057913 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 3 90 25.036 T 25-04-2017 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 A4U88_RS11785 a993e81aa692f946d419528340057913 92 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 9 88 1.3E-34 T 25-04-2017 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 A4U88_RS11785 a993e81aa692f946d419528340057913 92 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 26 88 4.7E-13 T 25-04-2017 IPR008792 Coenzyme PQQ synthesis D A4U88_RS11785 a993e81aa692f946d419528340057913 92 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 3 90 25.036 T 25-04-2017 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 A4U88_RS06590 a1098678fd6ba016d18ec3be1c7f45c2 384 Gene3D G3DSA:3.90.1150.10 273 383 1.6E-21 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS06590 a1098678fd6ba016d18ec3be1c7f45c2 384 Pfam PF00155 Aminotransferase class I and II 32 381 1.6E-61 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS06590 a1098678fd6ba016d18ec3be1c7f45c2 384 SUPERFAMILY SSF53383 11 383 4.12E-99 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS06590 a1098678fd6ba016d18ec3be1c7f45c2 384 Gene3D G3DSA:3.40.640.10 45 272 3.1E-74 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 78 4.8E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 SUPERFAMILY SSF46785 17 93 4.46E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 Gene3D G3DSA:3.40.190.10 105 205 1.0E-24 T 25-04-2017 A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 Pfam PF03466 LysR substrate binding domain 101 303 1.2E-24 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 TIGRFAM TIGR02036 dsdC: D-serine deaminase transcriptional activator 14 303 3.0E-116 T 25-04-2017 IPR011781 D-serine deaminase transcriptional activator A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 Gene3D G3DSA:1.10.10.10 14 97 1.6E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17320 68b0f336873e7012c89ccfecebc97599 309 SUPERFAMILY SSF53850 102 305 6.88E-28 T 25-04-2017 A4U88_RS16995 b3ca511b9c97f285988fc9042774b49c 190 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 6.1E-71 T 25-04-2017 IPR004507 Flavin prenyltransferase UbiX/Pad1 A4U88_RS16995 b3ca511b9c97f285988fc9042774b49c 190 Pfam PF02441 Flavoprotein 2 127 5.9E-24 T 25-04-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 A4U88_RS16995 b3ca511b9c97f285988fc9042774b49c 190 SUPERFAMILY SSF52507 2 187 2.22E-58 T 25-04-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 A4U88_RS16995 b3ca511b9c97f285988fc9042774b49c 190 Gene3D G3DSA:3.40.50.1950 2 188 1.7E-76 T 25-04-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 A4U88_RS16995 b3ca511b9c97f285988fc9042774b49c 190 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 36.959 T 25-04-2017 IPR004507 Flavin prenyltransferase UbiX/Pad1 A4U88_RS04695 b80b552079605981738a0a81d9860958 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 41.527 T 25-04-2017 IPR007476 Putative exonuclease, RdgC GO:0006310 A4U88_RS04695 b80b552079605981738a0a81d9860958 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 2.9E-129 T 25-04-2017 IPR007476 Putative exonuclease, RdgC GO:0006310 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 SUPERFAMILY SSF51735 1 122 4.6E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 1.1E-146 T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.2E-39 T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.2E-39 T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.2E-39 T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.2E-39 T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 25-04-2017 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 Pfam PF02629 CoA binding domain 6 99 2.0E-31 T 25-04-2017 IPR003781 CoA-binding GO:0048037 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 PIRSF PIRSF001553 1 290 1.1E-135 T 25-04-2017 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 Pfam PF00549 CoA-ligase 151 271 7.0E-21 T 25-04-2017 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 SMART SM00881 4 100 1.2E-37 T 25-04-2017 IPR003781 CoA-binding GO:0048037 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 Gene3D G3DSA:3.40.50.261 120 287 7.8E-78 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 Gene3D G3DSA:3.40.50.720 2 119 1.5E-56 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05985 47e7a269ee7eff6966f4bb267bac6d14 290 SUPERFAMILY SSF52210 123 288 1.7E-57 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 SMART SM00344 1 110 2.9E-47 T 25-04-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 SUPERFAMILY SSF54909 61 146 5.5E-18 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 2.6E-19 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 2.6E-19 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 2.6E-19 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 Gene3D G3DSA:1.10.10.10 2 52 3.0E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 Gene3D G3DSA:3.30.70.920 54 147 2.0E-26 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 Pfam PF01037 Lrp/AsnC ligand binding domain 67 141 3.0E-19 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.5E-21 T 25-04-2017 A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 25-04-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site A4U88_RS17940 0e87f64788a80a2e318b825f19c87b33 153 SUPERFAMILY SSF46785 1 61 2.14E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 SUPERFAMILY SSF52540 9 232 1.71E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 SMART SM00382 284 480 6.3E-5 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 SMART SM00382 33 231 3.0E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 SUPERFAMILY SSF52540 251 490 2.61E-39 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 Pfam PF00005 ABC transporter 24 175 1.7E-25 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 Pfam PF00005 ABC transporter 275 429 8.1E-17 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 Gene3D G3DSA:3.40.50.300 8 239 9.7E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 Gene3D G3DSA:3.40.50.300 257 492 9.8E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16270 840de725c2911b885c25edcd9f4478b5 503 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06855 20f7b461969345ca666116d0539271e3 268 SUPERFAMILY SSF52540 25 266 9.65E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06855 20f7b461969345ca666116d0539271e3 268 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 27 268 1.3E-114 T 25-04-2017 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD A4U88_RS06855 20f7b461969345ca666116d0539271e3 268 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 245 267 1.2E-8 T 25-04-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal A4U88_RS06855 20f7b461969345ca666116d0539271e3 268 Pfam PF00005 ABC transporter 43 197 8.4E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06855 20f7b461969345ca666116d0539271e3 268 Gene3D G3DSA:3.40.50.300 24 265 1.1E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18765 e6739c0151553e09df788012a4c56d08 114 PIRSF PIRSF028770 1 109 1.9E-55 T 25-04-2017 IPR011223 Uncharacterised conserved protein UCP028770 A4U88_RS18765 e6739c0151553e09df788012a4c56d08 114 Pfam PF11742 Protein of unknown function (DUF3302) 3 78 1.1E-38 T 25-04-2017 IPR011223 Uncharacterised conserved protein UCP028770 A4U88_RS10840 2698a9b093fb8ad91ac986761077c308 173 SUPERFAMILY SSF49329 25 173 5.37E-47 T 25-04-2017 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10840 2698a9b093fb8ad91ac986761077c308 173 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 161 172 - T 25-04-2017 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10840 2698a9b093fb8ad91ac986761077c308 173 Gene3D G3DSA:2.60.40.200 23 173 1.1E-44 T 25-04-2017 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10840 2698a9b093fb8ad91ac986761077c308 173 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 65 75 - T 25-04-2017 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10840 2698a9b093fb8ad91ac986761077c308 173 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 36 172 9.5E-29 T 25-04-2017 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.7E-14 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 Gene3D G3DSA:1.10.10.10 4 87 1.7E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 SUPERFAMILY SSF46785 4 88 2.5E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 Pfam PF03466 LysR substrate binding domain 89 296 1.8E-38 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 Gene3D G3DSA:3.40.190.10 93 179 2.0E-16 T 25-04-2017 A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 Gene3D G3DSA:3.40.190.10 180 264 4.6E-20 T 25-04-2017 A4U88_RS04515 5fbb42c94535ff7fad9b4c9d7c2f0783 302 SUPERFAMILY SSF53850 90 298 1.99E-39 T 25-04-2017 A4U88_RS23610 a560a634b521d55e9dccf994ef63f3fe 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 40.456 T 25-04-2017 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS23610 a560a634b521d55e9dccf994ef63f3fe 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 4.6E-95 T 25-04-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS23610 a560a634b521d55e9dccf994ef63f3fe 255 SUPERFAMILY SSF51351 1 249 9.82E-92 T 25-04-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS23610 a560a634b521d55e9dccf994ef63f3fe 255 Gene3D G3DSA:3.20.20.70 1 250 1.1E-103 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS23610 a560a634b521d55e9dccf994ef63f3fe 255 Pfam PF00121 Triosephosphate isomerase 5 246 8.3E-94 T 25-04-2017 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS23610 a560a634b521d55e9dccf994ef63f3fe 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 25-04-2017 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS03985 9d9325acfb35ea659a0f81413feee60a 247 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 1.1E-94 T 25-04-2017 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03985 9d9325acfb35ea659a0f81413feee60a 247 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 4.4E-90 T 25-04-2017 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03985 9d9325acfb35ea659a0f81413feee60a 247 SUPERFAMILY SSF53098 5 183 1.16E-54 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS03985 9d9325acfb35ea659a0f81413feee60a 247 Gene3D G3DSA:3.30.420.10 6 184 2.1E-66 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS03985 9d9325acfb35ea659a0f81413feee60a 247 Pfam PF00929 Exonuclease 9 175 5.7E-41 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS03985 9d9325acfb35ea659a0f81413feee60a 247 SMART SM00479 7 184 3.7E-52 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 SUPERFAMILY SSF47384 662 734 4.9E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Pfam PF13492 GAF domain 531 647 2.1E-11 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Pfam PF00512 His Kinase A (phospho-acceptor) domain 667 733 7.5E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Gene3D G3DSA:1.10.287.130 661 729 1.3E-16 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 778 887 1.8E-23 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Gene3D G3DSA:3.40.50.300 22 230 3.7E-102 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 SMART SM00388 666 733 2.1E-13 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Gene3D G3DSA:3.40.50.620 244 361 1.1E-9 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 23 231 3.5E-99 T 25-04-2017 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 SUPERFAMILY SSF52402 253 363 1.59E-8 T 25-04-2017 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Gene3D G3DSA:1.20.120.620 399 504 6.1E-40 T 25-04-2017 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 SMART SM00387 777 887 1.5E-34 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 814 828 3.6E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 832 842 3.6E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 871 884 3.6E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 PRINTS PR00344 Bacterial sensor protein C-terminal signature 847 865 3.6E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 SUPERFAMILY SSF55781 511 659 1.1E-5 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 SUPERFAMILY SSF55874 722 889 2.1E-42 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Gene3D G3DSA:3.30.565.10 735 890 5.9E-41 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05860 a172fbef0e98fd2ae1aea337181cbac5 898 Pfam PF13493 Domain of unknown function (DUF4118) 405 509 1.5E-30 T 25-04-2017 IPR025201 Sensor protein KdpD, transmembrane domain A4U88_RS00600 bc5001ae83a33e71fc6eab422d354e05 246 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 61 237 2.4E-73 T 25-04-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS00600 bc5001ae83a33e71fc6eab422d354e05 246 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 231 1.1E-52 T 25-04-2017 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS00600 bc5001ae83a33e71fc6eab422d354e05 246 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 1 246 59.826 T 25-04-2017 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS17515 e6e534ceb5daca39f39d2b7233cecd30 335 Gene3D G3DSA:3.40.50.1980 43 171 6.5E-26 T 25-04-2017 A4U88_RS17515 e6e534ceb5daca39f39d2b7233cecd30 335 Gene3D G3DSA:3.40.50.1980 172 333 3.8E-30 T 25-04-2017 A4U88_RS17515 e6e534ceb5daca39f39d2b7233cecd30 335 Pfam PF01497 Periplasmic binding protein 63 312 2.4E-31 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS17515 e6e534ceb5daca39f39d2b7233cecd30 335 SUPERFAMILY SSF53807 40 325 5.49E-47 T 25-04-2017 A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 SUPERFAMILY SSF51182 37 115 3.56E-13 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 Gene3D G3DSA:2.60.120.10 37 98 3.0E-12 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 Pfam PF07883 Cupin domain 36 83 3.6E-9 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 229 271 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 SMART SM00342 192 275 1.2E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 Pfam PF12833 Helix-turn-helix domain 202 276 2.7E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 Gene3D G3DSA:1.10.10.60 227 277 1.3E-14 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS03725 550bdc1820cc2db46c34289f71bb13ca 282 SUPERFAMILY SSF46689 228 278 8.51E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 230 3.4E-41 T 25-04-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 6.2E-56 T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 ProSitePatterns PS01229 Hypothetical cof family signature 2. 211 233 - T 25-04-2017 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 Gene3D G3DSA:3.30.1240.10 83 175 1.5E-12 T 25-04-2017 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 Gene3D G3DSA:3.40.50.1000 1 72 6.7E-52 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 Gene3D G3DSA:3.40.50.1000 176 264 6.7E-52 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 2.8E-52 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 274 65.447 T 25-04-2017 IPR023938 HMP-PP phosphatase GO:0016818 A4U88_RS04995 aeb4fb13442fc30b76c3054e5c584c4a 274 SUPERFAMILY SSF56784 1 263 3.95E-64 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 Gene3D G3DSA:4.10.910.10 72 118 6.5E-27 T 25-04-2017 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 SUPERFAMILY SSF46946 2 114 2.35E-46 T 25-04-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 1.5E-53 T 25-04-2017 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.298 T 25-04-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 25-04-2017 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 Gene3D G3DSA:1.10.8.50 2 71 2.6E-29 T 25-04-2017 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 1.2E-33 T 25-04-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22235 8c2d9e4eaed98d452796b826d9640a2d 118 PIRSF PIRSF002134 1 118 1.9E-42 T 25-04-2017 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS03695 9a146c56af6ea2c3a4010b68e56a9021 323 Gene3D G3DSA:3.20.20.100 9 314 4.8E-103 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS03695 9a146c56af6ea2c3a4010b68e56a9021 323 Pfam PF00248 Aldo/keto reductase family 15 312 5.4E-77 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS03695 9a146c56af6ea2c3a4010b68e56a9021 323 PRINTS PR00069 Aldo-keto reductase signature 111 129 1.1E-5 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03695 9a146c56af6ea2c3a4010b68e56a9021 323 PRINTS PR00069 Aldo-keto reductase signature 45 69 1.1E-5 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03695 9a146c56af6ea2c3a4010b68e56a9021 323 PRINTS PR00069 Aldo-keto reductase signature 142 159 1.1E-5 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03695 9a146c56af6ea2c3a4010b68e56a9021 323 SUPERFAMILY SSF51430 1 313 5.24E-102 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 PIRSF PIRSF004776 3 415 3.5E-214 T 25-04-2017 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 Pfam PF01381 Helix-turn-helix 11 59 2.5E-8 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 SUPERFAMILY SSF52540 232 405 2.39E-27 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 SMART SM00530 6 62 2.7E-7 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 66 136 1.8E-19 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 Gene3D G3DSA:3.40.50.300 231 400 3.8E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 SUPERFAMILY SSF47413 5 59 9.48E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 Pfam PF13521 AAA domain 234 394 5.4E-34 T 25-04-2017 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 Gene3D G3DSA:1.10.260.40 6 58 3.9E-11 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 65 395 2.6E-153 T 25-04-2017 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0003677|GO:0006355|GO:0006810|GO:0019363 KEGG: 00760+2.7.7.1+2.7.1.22 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 SUPERFAMILY SSF52374 65 223 5.9E-21 T 25-04-2017 A4U88_RS02920 f773bb31a4220b29d5b9f3e09ea9b79a 424 Gene3D G3DSA:3.40.50.620 65 230 4.6E-52 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS22465 f6985afe44c3189a7ab0962ec564c2e8 255 SMART SM00382 26 215 5.7E-20 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS22465 f6985afe44c3189a7ab0962ec564c2e8 255 Gene3D G3DSA:3.40.50.300 1 213 1.4E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22465 f6985afe44c3189a7ab0962ec564c2e8 255 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22465 f6985afe44c3189a7ab0962ec564c2e8 255 Pfam PF00005 ABC transporter 17 156 2.1E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS22465 f6985afe44c3189a7ab0962ec564c2e8 255 SUPERFAMILY SSF52540 1 212 1.98E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21830 03e823caf48f1271bd1281f0286a8b8b 138 Gene3D G3DSA:2.60.120.460 1 138 6.5E-56 T 25-04-2017 IPR001602 Uncharacterised protein family UPF0047 A4U88_RS21830 03e823caf48f1271bd1281f0286a8b8b 138 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 4 138 3.2E-48 T 25-04-2017 IPR001602 Uncharacterised protein family UPF0047 A4U88_RS21830 03e823caf48f1271bd1281f0286a8b8b 138 PIRSF PIRSF004681 1 138 3.0E-44 T 25-04-2017 IPR001602 Uncharacterised protein family UPF0047 A4U88_RS21830 03e823caf48f1271bd1281f0286a8b8b 138 SUPERFAMILY SSF111038 1 138 1.7E-47 T 25-04-2017 IPR001602 Uncharacterised protein family UPF0047 A4U88_RS21830 03e823caf48f1271bd1281f0286a8b8b 138 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 99 117 - T 25-04-2017 IPR001602 Uncharacterised protein family UPF0047 A4U88_RS21830 03e823caf48f1271bd1281f0286a8b8b 138 Pfam PF01894 Uncharacterised protein family UPF0047 19 134 2.2E-37 T 25-04-2017 IPR001602 Uncharacterised protein family UPF0047 A4U88_RS12710 d07f6e224d1ebd7034357e018e98579a 75 Pfam PF06667 Phage shock protein B 4 74 6.0E-34 T 25-04-2017 IPR009554 Phage shock protein B GO:0006355|GO:0009271 A4U88_RS12710 d07f6e224d1ebd7034357e018e98579a 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 1.4E-34 T 25-04-2017 IPR009554 Phage shock protein B GO:0006355|GO:0009271 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 Gene3D G3DSA:3.30.420.10 2 175 3.9E-14 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.819 T 25-04-2017 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 SUPERFAMILY SSF53098 2 210 1.9E-61 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 Pfam PF01612 3'-5' exonuclease 3 170 8.2E-38 T 25-04-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 SMART SM00474 3 171 3.4E-44 T 25-04-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 SUPERFAMILY SSF47819 296 372 1.57E-22 T 25-04-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 369 2.7E-144 T 25-04-2017 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 SMART SM00341 210 289 6.0E-19 T 25-04-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 SUPERFAMILY SSF47819 196 300 3.27E-29 T 25-04-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 A4U88_RS13495 eb345c6ce086f338493bbc3ef9a97ce1 373 Pfam PF00570 HRDC domain 213 279 1.2E-15 T 25-04-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 SMART SM00382 26 223 1.2E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 SMART SM00382 337 506 3.2E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 Pfam PF16326 ABC transporter C-terminal domain 562 623 1.4E-8 T 25-04-2017 IPR032524 ABC transporter Uup, C-terminal GO:0003677 A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 Pfam PF00005 ABC transporter 328 459 1.6E-24 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 Pfam PF00005 ABC transporter 17 178 1.9E-22 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 Pfam PF12848 ABC transporter 217 295 4.9E-28 T 25-04-2017 IPR032781 ABC-transporter extension domain A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 SUPERFAMILY SSF52540 119 256 4.3E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 SUPERFAMILY SSF52540 2 92 4.3E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 Gene3D G3DSA:3.40.50.300 1 265 7.8E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 Gene3D G3DSA:3.40.50.300 310 531 3.4E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22450 6e5a2e0736a72346742449069b63862b 637 SUPERFAMILY SSF52540 294 510 4.58E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10120 a91a550f11990b0e3e0c51b1e8dd1258 511 Pfam PF00144 Beta-lactamase 21 322 2.6E-35 T 25-04-2017 IPR001466 Beta-lactamase-related A4U88_RS10120 a91a550f11990b0e3e0c51b1e8dd1258 511 SUPERFAMILY SSF56601 15 335 2.64E-49 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS10120 a91a550f11990b0e3e0c51b1e8dd1258 511 Gene3D G3DSA:3.40.710.10 24 341 2.1E-48 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS06735 d418bc722488dbbf5c4e13e03054930b 85 Gene3D G3DSA:3.30.1660.10 18 85 4.6E-26 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS06735 d418bc722488dbbf5c4e13e03054930b 85 SUPERFAMILY SSF159871 3 85 7.46E-24 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS06735 d418bc722488dbbf5c4e13e03054930b 85 Pfam PF07338 Protein of unknown function (DUF1471) 34 85 2.0E-18 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12340 44a02d530f5014272759e871c1573c56 256 Pfam PF00005 ABC transporter 21 180 1.7E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12340 44a02d530f5014272759e871c1573c56 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 251 4.5E-8 T 25-04-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal A4U88_RS12340 44a02d530f5014272759e871c1573c56 256 SMART SM00382 29 252 4.0E-4 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12340 44a02d530f5014272759e871c1573c56 256 SUPERFAMILY SSF52540 3 250 4.36E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12340 44a02d530f5014272759e871c1573c56 256 Gene3D G3DSA:3.40.50.300 2 249 4.0E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 1.3E-26 T 25-04-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 1.3E-26 T 25-04-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 1.3E-26 T 25-04-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 1.3E-26 T 25-04-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 25-04-2017 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 1.2E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 1.2E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 1.2E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 1.2E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 1.2E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 38.622 T 25-04-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 Gene3D G3DSA:2.40.37.10 265 419 1.4E-56 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 45 275 3.9E-58 T 25-04-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 SUPERFAMILY SSF50621 250 419 1.42E-58 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 Gene3D G3DSA:3.20.20.10 47 264 2.8E-63 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 280 395 5.8E-18 T 25-04-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 418 1.9E-131 T 25-04-2017 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 25-04-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site A4U88_RS19525 6690d3ec88edb6d00ce50b1571e4cd33 420 SUPERFAMILY SSF51419 25 277 7.41E-57 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS07195 902f76a23510ebc8382f321b26e306f7 738 Gene3D G3DSA:3.30.70.100 632 714 1.1E-7 T 25-04-2017 A4U88_RS07195 902f76a23510ebc8382f321b26e306f7 738 Pfam PF00924 Mechanosensitive ion channel 516 715 2.8E-37 T 25-04-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 A4U88_RS07195 902f76a23510ebc8382f321b26e306f7 738 SUPERFAMILY SSF50182 559 617 1.34E-9 T 25-04-2017 IPR010920 LSM domain A4U88_RS07195 902f76a23510ebc8382f321b26e306f7 738 SUPERFAMILY SSF82689 631 722 4.45E-12 T 25-04-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 A4U88_RS07195 902f76a23510ebc8382f321b26e306f7 738 SUPERFAMILY SSF82861 478 557 7.98E-13 T 25-04-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 A4U88_RS07195 902f76a23510ebc8382f321b26e306f7 738 Gene3D G3DSA:2.30.30.60 577 617 1.7E-8 T 25-04-2017 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.463 T 25-04-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 SUPERFAMILY SSF46785 3 69 8.68E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 6.8E-13 T 25-04-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 6.8E-13 T 25-04-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 6.8E-13 T 25-04-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 Pfam PF01726 LexA DNA binding domain 1 65 1.4E-29 T 25-04-2017 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 1.3E-83 T 25-04-2017 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 Gene3D G3DSA:1.10.10.10 1 69 4.6E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 Pfam PF00717 Peptidase S24-like 114 179 3.1E-16 T 25-04-2017 IPR019759 Peptidase S24/S26A/S26B A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 SUPERFAMILY SSF51306 76 198 6.28E-39 T 25-04-2017 IPR015927 Peptidase S24/S26A/S26B/S26C A4U88_RS21905 08b9a24acb100d8e1957a2273adcbea0 202 Gene3D G3DSA:2.10.109.10 76 198 2.3E-46 T 25-04-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain A4U88_RS02210 7174897290415148a401df3d5c9f4e2d 264 Pfam PF01841 Transglutaminase-like superfamily 122 213 3.6E-22 T 25-04-2017 IPR002931 Transglutaminase-like A4U88_RS02210 7174897290415148a401df3d5c9f4e2d 264 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 3.6E-23 T 25-04-2017 IPR013589 Bacterial transglutaminase-like, N-terminal A4U88_RS02210 7174897290415148a401df3d5c9f4e2d 264 SMART SM00460 154 216 1.4E-17 T 25-04-2017 IPR002931 Transglutaminase-like A4U88_RS02210 7174897290415148a401df3d5c9f4e2d 264 SUPERFAMILY SSF54001 51 252 7.11E-39 T 25-04-2017 A4U88_RS02210 7174897290415148a401df3d5c9f4e2d 264 Gene3D G3DSA:3.90.260.10 153 245 1.5E-11 T 25-04-2017 IPR002931 Transglutaminase-like A4U88_RS11795 1110d7e5511910f9a10bfb998ef43ed3 303 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 303 4.5E-118 T 25-04-2017 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 A4U88_RS11795 1110d7e5511910f9a10bfb998ef43ed3 303 Gene3D G3DSA:3.60.15.10 1 303 2.8E-119 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11795 1110d7e5511910f9a10bfb998ef43ed3 303 Pfam PF12706 Beta-lactamase superfamily domain 50 270 3.8E-38 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11795 1110d7e5511910f9a10bfb998ef43ed3 303 SUPERFAMILY SSF56281 1 303 8.94E-61 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11795 1110d7e5511910f9a10bfb998ef43ed3 303 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 303 157.088 T 25-04-2017 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 3.4E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 3.4E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 3.4E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 Gene3D G3DSA:3.40.190.10 178 260 1.1E-14 T 25-04-2017 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.3E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 SUPERFAMILY SSF53850 92 293 3.62E-22 T 25-04-2017 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 Gene3D G3DSA:1.10.10.10 4 85 5.0E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 SUPERFAMILY SSF46785 4 87 1.72E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 Gene3D G3DSA:3.40.190.10 94 177 3.2E-15 T 25-04-2017 A4U88_RS00250 c90e9e4f4cfa5ee046ba38d4dd7a09bc 303 Pfam PF03466 LysR substrate binding domain 90 290 4.1E-22 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 SUPERFAMILY SSF52518 2 254 2.85E-71 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Gene3D G3DSA:3.40.50.920 256 413 1.7E-59 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Gene3D G3DSA:3.40.50.970 798 1168 7.6E-127 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 PIRSF PIRSF000159 1 1177 0.0 T 25-04-2017 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 265 347 1.8E-15 T 25-04-2017 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 SUPERFAMILY SSF52922 256 412 1.04E-42 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 SUPERFAMILY SSF54862 665 837 1.09E-21 T 25-04-2017 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 957 1069 1.6E-8 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 SUPERFAMILY SSF52518 795 1164 1.65E-118 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 745 756 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 689 700 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Gene3D G3DSA:3.30.70.20 671 784 8.4E-22 T 25-04-2017 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Gene3D G3DSA:3.40.920.10 418 619 5.4E-76 T 25-04-2017 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 607 2.4E-32 T 25-04-2017 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Pfam PF12838 4Fe-4S dicluster domain 689 757 1.0E-9 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 1 1168 0.0 T 25-04-2017 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 SMART SM00890 622 679 1.2E-30 T 25-04-2017 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Pfam PF10371 Domain of unknown function 627 678 1.5E-23 T 25-04-2017 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 SUPERFAMILY SSF53323 419 668 2.09E-74 T 25-04-2017 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Gene3D G3DSA:3.40.50.970 1 254 1.6E-108 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Gene3D G3DSA:4.10.780.10 628 668 5.2E-21 T 25-04-2017 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 A4U88_RS12625 dc452edcf6bfa77cc377e2df8286f3b5 1177 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 13 242 2.2E-79 T 25-04-2017 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 Gene3D G3DSA:3.40.630.30 7 144 1.1E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 Gene3D G3DSA:3.10.129.10 145 298 1.4E-62 T 25-04-2017 IPR029069 HotDog domain A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 SUPERFAMILY SSF55729 2 146 3.38E-27 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 SUPERFAMILY SSF54637 155 297 4.07E-41 T 25-04-2017 IPR029069 HotDog domain A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 165 298 4.4E-47 T 25-04-2017 IPR012660 Thioesterase, putative A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 158 297 2.0E-48 T 25-04-2017 IPR012660 Thioesterase, putative A4U88_RS23895 5d5f15eb153961735a25e58f0170223f 315 Pfam PF00583 Acetyltransferase (GNAT) family 50 122 3.3E-12 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Gene3D G3DSA:1.10.3850.10 279 498 2.2E-61 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Gene3D G3DSA:1.10.3850.10 816 1030 2.3E-57 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Gene3D G3DSA:3.30.2090.10 181 275 1.7E-26 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 2.4E-115 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82693 135 182 2.17E-27 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82693 274 330 2.17E-27 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82693 566 670 1.05E-31 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82714 182 272 7.06E-22 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Gene3D G3DSA:3.30.70.1430 38 139 1.7E-36 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82866 296 497 2.49E-49 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Gene3D G3DSA:3.30.2090.10 723 811 3.7E-26 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82866 807 1034 1.57E-45 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82693 38 132 8.89E-28 T 25-04-2017 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1047 0.0 T 25-04-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 SUPERFAMILY SSF82714 724 811 3.4E-21 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS05125 4453edda9fa33aae3dea7bc2b0cef71c 1048 Gene3D G3DSA:3.30.70.1430 568 670 1.2E-37 T 25-04-2017 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Gene3D G3DSA:3.40.1110.10 367 550 1.5E-35 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SUPERFAMILY SSF81665 276 369 3.66E-101 T 25-04-2017 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SUPERFAMILY SSF81665 57 160 3.66E-101 T 25-04-2017 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SUPERFAMILY SSF81665 692 900 3.66E-101 T 25-04-2017 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Gene3D G3DSA:1.20.1110.10 103 154 8.9E-69 T 25-04-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Gene3D G3DSA:1.20.1110.10 612 893 8.9E-69 T 25-04-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 719 730 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 751 764 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 288 304 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 409 422 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 856 877 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 701 716 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 305 324 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 771 787 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 PRINTS PR01836 Magnesium-transporting ATPase signature 806 827 2.3E-82 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Pfam PF00702 haloacid dehalogenase-like hydrolase 371 657 1.3E-20 T 25-04-2017 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Pfam PF00690 Cation transporter/ATPase, N-terminus 55 117 1.7E-12 T 25-04-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 43 902 0.0 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Pfam PF00689 Cation transporting ATPase, C-terminus 726 892 3.3E-13 T 25-04-2017 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Gene3D G3DSA:2.70.150.10 155 275 3.6E-41 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Gene3D G3DSA:2.70.150.10 66 102 3.6E-41 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 377 383 - T 25-04-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SUPERFAMILY SSF81660 370 551 5.89E-40 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 Pfam PF00122 E1-E2 ATPase 128 366 4.1E-59 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SMART SM00831 50 122 6.5E-7 T 25-04-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SUPERFAMILY SSF56784 534 687 2.69E-38 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 SUPERFAMILY SSF81653 173 274 9.29E-27 T 25-04-2017 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 273 393 3.1E-19 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS02195 0a819745df94b38d3f6cabafcb9f6f96 902 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 604 732 1.6E-30 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS21615 ed9a51dcb31c1f12172a8a788003615f 341 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 275 2.0E-116 T 25-04-2017 IPR007221 Rod shape-determining protein MreC GO:0008360 A4U88_RS21615 ed9a51dcb31c1f12172a8a788003615f 341 Pfam PF04085 rod shape-determining protein MreC 123 269 5.7E-37 T 25-04-2017 IPR007221 Rod shape-determining protein MreC GO:0008360 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 2.8E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 2.8E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 2.8E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 SMART SM00448 2 115 1.4E-21 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 Pfam PF00072 Response regulator receiver domain 5 116 5.4E-24 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 SUPERFAMILY SSF52172 1 125 5.27E-29 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 Gene3D G3DSA:1.10.10.10 147 198 9.8E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 Gene3D G3DSA:3.40.50.2300 2 146 6.0E-33 T 25-04-2017 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 SMART SM00421 139 196 1.1E-23 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 195 4.9E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06110 98b285e73fa2e79393edce4b625ba454 201 SUPERFAMILY SSF46894 137 198 3.27E-19 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS16225 d0a68368a153b16ba2863c65ca32257f 248 Gene3D G3DSA:2.10.109.10 114 244 1.6E-12 T 25-04-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain A4U88_RS16225 d0a68368a153b16ba2863c65ca32257f 248 SUPERFAMILY SSF51306 112 244 2.62E-19 T 25-04-2017 IPR015927 Peptidase S24/S26A/S26B/S26C A4U88_RS16225 d0a68368a153b16ba2863c65ca32257f 248 Pfam PF00717 Peptidase S24-like 159 225 5.4E-10 T 25-04-2017 IPR019759 Peptidase S24/S26A/S26B A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 PIRSF PIRSF000770 5 285 1.8E-32 T 25-04-2017 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 Gene3D G3DSA:1.10.10.10 224 282 6.2E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 1.2E-129 T 25-04-2017 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 280 1.2E-34 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 Pfam PF04545 Sigma-70, region 4 229 280 8.5E-16 T 25-04-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 Pfam PF04542 Sigma-70 region 2 53 122 1.3E-16 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.9E-19 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 3.9E-19 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.9E-19 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 3.9E-19 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 Gene3D G3DSA:1.10.601.10 15 122 1.1E-34 T 25-04-2017 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.653 T 25-04-2017 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 SUPERFAMILY SSF88946 12 122 3.66E-40 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 Pfam PF00140 Sigma-70 factor, region 1.2 15 40 4.2E-7 T 25-04-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS00845 adf84e5a08024e2e602ae8be59cd6c86 285 SUPERFAMILY SSF88659 200 283 1.35E-18 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS19130 be8887f5a9bc0e0568645b60334919dd 227 Pfam PF04170 NlpE N-terminal domain 38 123 7.8E-26 T 25-04-2017 IPR007298 Copper resistance lipoprotein NlpE A4U88_RS19130 be8887f5a9bc0e0568645b60334919dd 227 Pfam PF17185 NlpE C-terminal OB domain 136 225 8.3E-37 T 25-04-2017 IPR033450 NlpE, C-terminal OB domain A4U88_RS16655 7a836967ed14701e55610e494d5e7ae6 384 Gene3D G3DSA:1.20.1250.20 210 376 2.5E-12 T 25-04-2017 A4U88_RS16655 7a836967ed14701e55610e494d5e7ae6 384 Pfam PF07690 Major Facilitator Superfamily 22 322 3.8E-13 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS16655 7a836967ed14701e55610e494d5e7ae6 384 SUPERFAMILY SSF103473 20 379 1.09E-34 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16655 7a836967ed14701e55610e494d5e7ae6 384 Gene3D G3DSA:1.20.1250.20 22 193 1.0E-13 T 25-04-2017 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 25-04-2017 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 Gene3D G3DSA:3.20.20.10 11 212 4.1E-74 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 SUPERFAMILY SSF51419 8 234 3.05E-71 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 Gene3D G3DSA:2.40.37.10 213 358 2.7E-53 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 Hamap MF_01201 Alanine racemase. 1 357 34.513 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 TIGRFAM TIGR00492 alr: alanine racemase 3 357 8.6E-136 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 1.4E-36 T 25-04-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 7.4E-71 T 25-04-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 SMART SM01005 233 357 5.0E-61 T 25-04-2017 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 SUPERFAMILY SSF50621 227 358 1.53E-43 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 339 352 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 192 219 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 155 166 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 249 264 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 287 304 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 60 78 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 120 132 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 26 42 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS21850 a9fd7759096ed2e66a5ae832bc850fbe 359 PRINTS PR00992 Alanine racemase signature 266 281 5.1E-73 T 25-04-2017 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 1.3E-59 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 1.3E-59 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 1.3E-59 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 1.3E-59 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 1.3E-59 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 1.3E-59 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 Gene3D G3DSA:3.40.190.80 153 260 8.5E-40 T 25-04-2017 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 Pfam PF00459 Inositol monophosphatase family 2 261 2.5E-72 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 25-04-2017 IPR020583 Inositol monophosphatase, metal-binding site A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 2.0E-36 T 25-04-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 2.0E-36 T 25-04-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 2.0E-36 T 25-04-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 2.0E-36 T 25-04-2017 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 Gene3D G3DSA:3.30.540.10 2 152 8.5E-51 T 25-04-2017 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 25-04-2017 IPR020550 Inositol monophosphatase, conserved site GO:0046854 A4U88_RS18465 41309ff99d774379fcc83816a566ed82 267 SUPERFAMILY SSF56655 1 259 5.37E-85 T 25-04-2017 A4U88_RS18075 1be2d74a3fe8b647361a182a93bb2ece 205 SUPERFAMILY SSF50475 31 176 1.94E-21 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS18075 1be2d74a3fe8b647361a182a93bb2ece 205 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 11 205 4.6E-78 T 25-04-2017 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent A4U88_RS18075 1be2d74a3fe8b647361a182a93bb2ece 205 Gene3D G3DSA:2.30.110.10 31 148 2.3E-21 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS18075 1be2d74a3fe8b647361a182a93bb2ece 205 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 32 121 1.3E-15 T 25-04-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 SUPERFAMILY SSF52540 64 402 7.3E-72 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 1.3E-213 T 25-04-2017 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.391 T 25-04-2017 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 393 3.7E-17 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.9E-48 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Gene3D G3DSA:3.40.50.300 294 311 1.5E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Gene3D G3DSA:3.40.50.300 66 253 1.5E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 SMART SM00994 12 51 1.0E-24 T 25-04-2017 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 3.0E-21 T 25-04-2017 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 SMART SM01086 317 412 1.1E-35 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 25-04-2017 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 Gene3D G3DSA:1.10.8.60 316 413 1.5E-37 T 25-04-2017 A4U88_RS04955 1be853b51c76215a04c98e87cce3f8a9 423 SMART SM00382 111 302 5.1E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 4.2E-180 T 25-04-2017 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 2.3E-39 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 2.3E-39 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 2.3E-39 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 2.3E-39 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 2.3E-39 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 2.3E-39 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 SUPERFAMILY SSF51998 222 740 8.85E-168 T 25-04-2017 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 Gene3D G3DSA:3.20.70.20 610 699 1.2E-42 T 25-04-2017 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 Gene3D G3DSA:3.20.70.20 130 344 1.2E-42 T 25-04-2017 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 Gene3D G3DSA:3.20.70.20 398 559 1.2E-42 T 25-04-2017 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 1.1E-116 T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 SUPERFAMILY SSF48168 10 221 7.46E-75 T 25-04-2017 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 1.9E-13 T 25-04-2017 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 25-04-2017 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 A4U88_RS16685 031d0f3b4f7cd02f6d2cde8a8dafc3a5 762 Pfam PF03477 ATP cone domain 6 92 6.0E-16 T 25-04-2017 IPR005144 ATP-cone domain Reactome: R-HSA-499943 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 81 104 - T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 PIRSF PIRSF000137 1 535 1.7E-146 T 25-04-2017 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|Reactome: R-HSA-6798163 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 Pfam PF00732 GMC oxidoreductase 6 295 4.2E-86 T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 SUPERFAMILY SSF54373 290 475 1.47E-40 T 25-04-2017 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 Gene3D G3DSA:3.50.50.60 468 531 1.0E-116 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 Gene3D G3DSA:3.50.50.60 3 126 1.0E-116 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 Gene3D G3DSA:3.50.50.60 187 313 1.0E-116 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 Pfam PF05199 GMC oxidoreductase 388 526 9.6E-37 T 25-04-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 SUPERFAMILY SSF51905 2 288 6.62E-88 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02260 90cea1e92c1fc59bfb70cf4fb0934437 535 SUPERFAMILY SSF51905 474 533 6.62E-88 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.6E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.6E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 Pfam PF02909 Tetracyclin repressor, C-terminal all-alpha domain 77 201 4.8E-28 T 25-04-2017 IPR004111 Tetracycline transcriptional regulator, TetR, C-terminal GO:0045892 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00400 Tetracycline repressor protein signature 27 50 5.3E-36 T 25-04-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00400 Tetracycline repressor protein signature 185 199 5.3E-36 T 25-04-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00400 Tetracycline repressor protein signature 99 122 5.3E-36 T 25-04-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00400 Tetracycline repressor protein signature 79 98 5.3E-36 T 25-04-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 PRINTS PR00400 Tetracycline repressor protein signature 134 153 5.3E-36 T 25-04-2017 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 SUPERFAMILY SSF48498 74 203 4.34E-32 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 58 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 SUPERFAMILY SSF46689 9 71 4.39E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 Gene3D G3DSA:1.10.10.60 8 66 1.6E-22 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 Gene3D G3DSA:1.10.357.10 69 203 2.4E-39 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS12155 867606c56ee16de6424de7b37fa755de 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.4E-14 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 1.1E-206 T 25-04-2017 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 Gene3D G3DSA:3.90.1150.10 9 59 1.9E-33 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 Gene3D G3DSA:3.90.1150.10 306 400 1.9E-33 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 Gene3D G3DSA:3.40.640.10 60 302 2.2E-93 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 Pfam PF00202 Aminotransferase class-III 23 396 7.4E-131 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 400 45.866 T 25-04-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 SUPERFAMILY SSF53383 17 396 6.32E-126 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS22515 afbd1df70682f73f04c3f0bfdb01e012 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 398 4.4E-154 T 25-04-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 A4U88_RS17025 a09f0fc56a777a88b33910e7c96b5dd1 220 Pfam PF09335 SNARE associated Golgi protein 49 177 2.5E-26 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS07880 9e8fd5fac0dc57cb0e31c22ec0592b80 327 Gene3D G3DSA:1.20.58.340 136 249 3.1E-35 T 25-04-2017 A4U88_RS07880 9e8fd5fac0dc57cb0e31c22ec0592b80 327 SUPERFAMILY SSF144083 262 323 1.26E-15 T 25-04-2017 A4U88_RS07880 9e8fd5fac0dc57cb0e31c22ec0592b80 327 SUPERFAMILY SSF143865 6 259 2.09E-66 T 25-04-2017 A4U88_RS07880 9e8fd5fac0dc57cb0e31c22ec0592b80 327 Pfam PF01544 CorA-like Mg2+ transporter protein 35 323 2.4E-60 T 25-04-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 A4U88_RS07880 9e8fd5fac0dc57cb0e31c22ec0592b80 327 Gene3D G3DSA:1.20.58.340 251 327 2.6E-19 T 25-04-2017 A4U88_RS07880 9e8fd5fac0dc57cb0e31c22ec0592b80 327 Gene3D G3DSA:3.30.460.20 4 135 4.7E-36 T 25-04-2017 A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 Pfam PF02687 FtsX-like permease family 532 645 6.3E-18 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 SMART SM00382 37 231 1.9E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 Pfam PF00005 ABC transporter 28 176 1.2E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 Pfam PF12704 MacB-like periplasmic core domain 278 495 6.6E-33 T 25-04-2017 IPR025857 MacB-like periplasmic core domain A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 Gene3D G3DSA:3.40.50.300 6 236 4.0E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19665 75f421d31161d3cc40d872c2c609e40d 652 SUPERFAMILY SSF52540 8 230 3.51E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 SUPERFAMILY SSF52540 3 189 3.75E-71 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 Gene3D G3DSA:3.30.63.10 42 87 1.1E-29 T 25-04-2017 A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 3.8E-76 T 25-04-2017 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 Gene3D G3DSA:3.40.50.300 1 17 1.9E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 Gene3D G3DSA:3.40.50.300 88 204 1.9E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 Pfam PF00625 Guanylate kinase 5 186 1.8E-69 T 25-04-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 Gene3D G3DSA:3.40.50.300 18 41 4.0E-5 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 38.163 T 25-04-2017 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 25-04-2017 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 A4U88_RS23855 8d69d0eb574e240348a8a21225cd8492 207 SMART SM00072 3 187 1.3E-84 T 25-04-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 59 2.9E-7 T 25-04-2017 IPR027379 Cardiolipin synthase N-terminal A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 Gene3D G3DSA:3.30.870.10 113 312 3.3E-36 T 25-04-2017 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 SUPERFAMILY SSF56024 72 315 9.42E-48 T 25-04-2017 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 9.0E-208 T 25-04-2017 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 SUPERFAMILY SSF56024 273 473 1.66E-48 T 25-04-2017 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 Gene3D G3DSA:3.30.870.10 313 460 9.3E-35 T 25-04-2017 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 SMART SM00155 399 426 4.2E-5 T 25-04-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 SMART SM00155 219 246 5.1E-4 T 25-04-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 52.259 T 25-04-2017 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 Pfam PF13091 PLD-like domain 329 442 5.2E-23 T 25-04-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 A4U88_RS13160 56f30b4469886cf8ed10295e9ba6fdf4 486 Pfam PF13091 PLD-like domain 134 248 2.8E-11 T 25-04-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 Pfam PF13377 Periplasmic binding protein-like domain 176 337 1.2E-45 T 25-04-2017 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 SUPERFAMILY SSF53822 68 340 4.4E-92 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 SUPERFAMILY SSF47413 8 67 4.59E-15 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:3.40.50.2300 66 175 7.1E-37 T 25-04-2017 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 9.4E-18 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 25-04-2017 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 SMART SM00354 9 79 3.6E-28 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:1.10.260.40 9 65 5.9E-21 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS23535 46d9999ad109ce17bf5fe897645b1e8a 342 Gene3D G3DSA:3.40.50.2300 176 338 5.1E-66 T 25-04-2017 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 45.507 T 25-04-2017 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Gene3D G3DSA:1.10.3090.10 122 360 2.3E-54 T 25-04-2017 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Pfam PF01743 Poly A polymerase head domain 3 122 2.4E-17 T 25-04-2017 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Gene3D G3DSA:3.30.460.10 2 121 2.8E-29 T 25-04-2017 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Pfam PF01966 HD domain 231 327 2.1E-10 T 25-04-2017 IPR006674 HD domain A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 SUPERFAMILY SSF81301 2 119 1.09E-30 T 25-04-2017 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 PIRSF PIRSF000813 1 408 8.0E-200 T 25-04-2017 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 SUPERFAMILY SSF81891 120 406 8.24E-57 T 25-04-2017 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.198 T 25-04-2017 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 A4U88_RS20990 b6f1691a1252f81c46ba9679a35f2d83 414 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 2.0E-16 T 25-04-2017 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 ProSitePatterns PS00216 Sugar transport proteins signature 1. 316 333 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 SUPERFAMILY SSF103661 466 498 5.49E-11 T 25-04-2017 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 Gene3D G3DSA:1.20.1250.20 25 237 3.7E-24 T 25-04-2017 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 Gene3D G3DSA:1.20.1250.20 248 445 8.1E-30 T 25-04-2017 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 Pfam PF08946 Osmosensory transporter coiled coil 455 500 7.5E-23 T 25-04-2017 IPR015041 Osmosensory transporter coiled coil A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 Pfam PF00083 Sugar (and other) transporter 29 448 4.2E-66 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 433 1.4E-142 T 25-04-2017 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 A4U88_RS08965 04ac6000888aadb630a62f94b4371afb 500 SUPERFAMILY SSF103473 25 446 2.88E-73 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 Gene3D G3DSA:1.10.10.10 103 157 7.3E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 Pfam PF08281 Sigma-70, region 4 103 155 3.3E-13 T 25-04-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 Gene3D G3DSA:1.10.1740.10 6 79 3.8E-17 T 25-04-2017 A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 SUPERFAMILY SSF88946 7 89 2.24E-15 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 155 2.4E-18 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 Pfam PF04542 Sigma-70 region 2 14 78 4.5E-10 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21880 b49b133e66b0ae79fdad12af11cd56a2 181 SUPERFAMILY SSF88659 100 156 9.59E-14 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 SUPERFAMILY SSF55785 132 251 3.84E-11 T 25-04-2017 IPR000014 PAS domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Gene3D G3DSA:3.30.450.20 140 251 2.9E-11 T 25-04-2017 A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Gene3D G3DSA:3.20.20.450 444 688 1.1E-66 T 25-04-2017 IPR001633 EAL domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 SMART SM00052 435 682 1.7E-59 T 25-04-2017 IPR001633 EAL domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Pfam PF08447 PAS fold 37 101 8.2E-10 T 25-04-2017 IPR013655 PAS fold-3 GO:0005515 A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 SUPERFAMILY SSF141868 444 689 7.06E-65 T 25-04-2017 IPR001633 EAL domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 264 425 1.9E-40 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Gene3D G3DSA:3.30.450.20 37 124 3.7E-13 T 25-04-2017 A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 SUPERFAMILY SSF55073 269 426 1.1E-47 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Pfam PF08448 PAS fold 145 254 3.5E-15 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 SMART SM00267 253 425 3.8E-62 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 SUPERFAMILY SSF55785 37 125 1.13E-10 T 25-04-2017 IPR000014 PAS domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Gene3D G3DSA:3.30.70.270 266 433 1.9E-54 T 25-04-2017 A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Pfam PF00990 Diguanylate cyclase, GGDEF domain 265 419 8.3E-49 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS11760 7249394be049eda9aa9baf5e1bec24cf 701 Pfam PF00563 EAL domain 444 676 7.3E-60 T 25-04-2017 IPR001633 EAL domain A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 Gene3D G3DSA:3.30.930.10 108 463 6.6E-113 T 25-04-2017 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.2E-14 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.2E-14 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.2E-14 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.2E-14 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 SUPERFAMILY SSF55681 99 464 7.96E-97 T 25-04-2017 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.599 T 25-04-2017 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 6.5E-210 T 25-04-2017 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 Gene3D G3DSA:2.40.50.140 14 104 1.1E-16 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 SUPERFAMILY SSF50249 15 102 1.29E-17 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 5.5E-12 T 25-04-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 A4U88_RS08435 7e398f2dbf9ed561f310bb1dca325c92 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 2.6E-83 T 25-04-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 SUPERFAMILY SSF50465 298 393 6.33E-36 T 25-04-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 7.8E-238 T 25-04-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 4.9E-34 T 25-04-2017 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Gene3D G3DSA:2.40.30.10 209 298 6.4E-37 T 25-04-2017 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 SUPERFAMILY SSF52540 6 219 2.58E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 9.7E-15 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Gene3D G3DSA:3.40.50.300 3 208 4.1E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.8E-17 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 SUPERFAMILY SSF50447 205 301 1.71E-30 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 60.963 T 25-04-2017 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Gene3D G3DSA:2.40.30.10 300 393 7.6E-47 T 25-04-2017 A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS01135 b5d12e786141e4f9916ef5aa2a1a21d8 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 6.4E-59 T 25-04-2017 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Gene3D G3DSA:3.90.960.10 254 388 3.2E-32 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 566 1.2E-273 T 25-04-2017 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 SUPERFAMILY SSF52954 463 570 1.4E-32 T 25-04-2017 IPR004154 Anticodon-binding A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Gene3D G3DSA:3.40.50.800 470 568 2.6E-31 T 25-04-2017 IPR004154 Anticodon-binding A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 PIRSF PIRSF001535 1 572 5.5E-277 T 25-04-2017 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.978 T 25-04-2017 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Pfam PF03129 Anticodon binding domain 475 567 1.5E-19 T 25-04-2017 IPR004154 Anticodon-binding A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 2.1E-49 T 25-04-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 SUPERFAMILY SSF55826 218 390 1.83E-31 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 3.2E-19 T 25-04-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 3.2E-19 T 25-04-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 3.2E-19 T 25-04-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 3.2E-19 T 25-04-2017 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 SUPERFAMILY SSF55681 407 478 1.27E-108 T 25-04-2017 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 SUPERFAMILY SSF55681 10 237 1.27E-108 T 25-04-2017 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Gene3D G3DSA:3.30.930.10 1 228 9.0E-109 T 25-04-2017 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Gene3D G3DSA:3.30.930.10 407 468 9.0E-109 T 25-04-2017 A4U88_RS19125 83631358602adcc598be3c40fdfb0200 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 1.2E-26 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 364 388 - T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 SUPERFAMILY SSF56235 28 553 1.78E-169 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 Pfam PF01019 Gamma-glutamyltranspeptidase 45 550 5.9E-170 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 236 252 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 285 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 364 382 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 388 406 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 142 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 429 444 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 52 77 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 142 161 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 453 470 7.4E-72 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS12110 8ae0ac33d7b30c75afae3f04429658c6 557 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 32 547 6.6E-150 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS15730 e179803bf7546d05ac5524df6dfe9398 477 Pfam PF00083 Sugar (and other) transporter 65 464 4.0E-37 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS15730 e179803bf7546d05ac5524df6dfe9398 477 Gene3D G3DSA:1.20.1250.20 40 226 1.8E-22 T 25-04-2017 A4U88_RS15730 e179803bf7546d05ac5524df6dfe9398 477 Gene3D G3DSA:1.20.1250.20 279 465 3.0E-13 T 25-04-2017 A4U88_RS15730 e179803bf7546d05ac5524df6dfe9398 477 SUPERFAMILY SSF103473 32 471 1.7E-58 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS21185 203d34bc31e12f7e5ad9ea58e45546d1 123 Pfam PF06476 Protein of unknown function (DUF1090) 14 118 2.8E-38 T 25-04-2017 IPR009468 Protein of unknown function DUF1090 A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 PIRSF PIRSF006281 2 500 4.5E-239 T 25-04-2017 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 2 498 61.66 T 25-04-2017 IPR023704 Glucan biosynthesis protein G A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 Gene3D G3DSA:2.60.40.10 388 499 3.1E-41 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 Gene3D G3DSA:2.70.98.10 11 384 1.3E-174 T 25-04-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 12 496 1.2E-197 T 25-04-2017 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 SUPERFAMILY SSF74650 12 383 2.04E-164 T 25-04-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 A4U88_RS09020 a896d2638e78161c5b86cdf4957b845b 500 SUPERFAMILY SSF81296 387 499 1.54E-33 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 SUPERFAMILY SSF52540 10 277 2.15E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 5.2E-46 T 25-04-2017 IPR032090 Peptide chain release factor 3, C-terminal A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 SUPERFAMILY SSF54980 393 468 1.8E-16 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 1.6E-46 T 25-04-2017 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Gene3D G3DSA:3.30.70.870 395 461 1.6E-12 T 25-04-2017 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Gene3D G3DSA:3.40.50.300 8 282 2.1E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.529 T 25-04-2017 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Gene3D G3DSA:2.40.30.10 292 394 3.2E-25 T 25-04-2017 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 153 7.7E-18 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 529 0.0 T 25-04-2017 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 1.9E-11 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS02845 84dc6f05736796bb50c60c6bef125a34 529 SUPERFAMILY SSF50447 262 393 4.42E-29 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 98 211 2.5E-8 T 25-04-2017 IPR000014 PAS domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 SMART SM00091 98 164 6.0E-6 T 25-04-2017 IPR000014 PAS domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 SUPERFAMILY SSF47384 190 268 7.26E-20 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.7E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.7E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 422 2.7E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.7E-14 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 268 4.6E-19 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Pfam PF11808 Domain of unknown function (DUF3329) 6 91 5.6E-30 T 25-04-2017 IPR021766 Protein of unknown function DUF3329 GO:0004673 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 SUPERFAMILY SSF55874 259 423 1.15E-41 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Gene3D G3DSA:3.30.450.20 99 194 2.5E-8 T 25-04-2017 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Pfam PF00989 PAS fold 99 189 1.9E-7 T 25-04-2017 IPR013767 PAS fold GO:0006355 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 SMART SM00388 203 269 3.1E-22 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 96 420 2.9E-136 T 25-04-2017 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 SUPERFAMILY SSF55785 87 195 1.08E-10 T 25-04-2017 IPR000014 PAS domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Gene3D G3DSA:3.30.565.10 255 422 6.1E-43 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Gene3D G3DSA:1.10.287.130 195 254 6.2E-23 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 423 9.1E-24 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS04735 ea718c997a0fc3c3b5d5cb51d7bfe5a8 438 SMART SM00387 313 425 1.1E-36 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01425 68e8f6b6977d6dc0ef2facff69e03821 206 Gene3D G3DSA:2.60.40.1090 58 205 2.8E-23 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01425 68e8f6b6977d6dc0ef2facff69e03821 206 SUPERFAMILY SSF49401 59 205 1.69E-31 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS09985 b752d6f094aa47f87ba209709aad67ca 300 Gene3D G3DSA:3.40.190.10 98 198 5.7E-29 T 25-04-2017 A4U88_RS09985 b752d6f094aa47f87ba209709aad67ca 300 Pfam PF03466 LysR substrate binding domain 95 299 6.3E-40 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS09985 b752d6f094aa47f87ba209709aad67ca 300 Gene3D G3DSA:1.10.10.10 12 91 1.4E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09985 b752d6f094aa47f87ba209709aad67ca 300 SUPERFAMILY SSF46785 10 118 2.29E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09985 b752d6f094aa47f87ba209709aad67ca 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 69 1.9E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS09985 b752d6f094aa47f87ba209709aad67ca 300 SUPERFAMILY SSF53850 95 300 7.76E-43 T 25-04-2017 A4U88_RS08465 1558e24e8fe69b94cd72ac24a95af454 382 Gene3D G3DSA:3.20.20.30 287 350 2.7E-105 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS08465 1558e24e8fe69b94cd72ac24a95af454 382 Gene3D G3DSA:3.20.20.30 3 253 2.7E-105 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS08465 1558e24e8fe69b94cd72ac24a95af454 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 3.3E-85 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS08465 1558e24e8fe69b94cd72ac24a95af454 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 4 380 70.687 T 25-04-2017 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 A4U88_RS08465 1558e24e8fe69b94cd72ac24a95af454 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 2.3E-191 T 25-04-2017 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 A4U88_RS08465 1558e24e8fe69b94cd72ac24a95af454 382 SUPERFAMILY SSF51679 3 349 4.19E-98 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS18125 1081b81051821f305dc357ad0b9f6ae8 112 Pfam PF07411 Domain of unknown function (DUF1508) 63 109 1.5E-21 T 25-04-2017 IPR010879 Domain of unknown function DUF1508 A4U88_RS18125 1081b81051821f305dc357ad0b9f6ae8 112 Pfam PF07411 Domain of unknown function (DUF1508) 11 58 3.6E-23 T 25-04-2017 IPR010879 Domain of unknown function DUF1508 A4U88_RS18125 1081b81051821f305dc357ad0b9f6ae8 112 Gene3D G3DSA:3.30.160.160 56 101 6.2E-20 T 25-04-2017 IPR010879 Domain of unknown function DUF1508 A4U88_RS18125 1081b81051821f305dc357ad0b9f6ae8 112 Gene3D G3DSA:3.30.160.160 5 50 2.8E-24 T 25-04-2017 IPR010879 Domain of unknown function DUF1508 A4U88_RS18125 1081b81051821f305dc357ad0b9f6ae8 112 SUPERFAMILY SSF160113 4 61 2.62E-19 T 25-04-2017 IPR010879 Domain of unknown function DUF1508 A4U88_RS18125 1081b81051821f305dc357ad0b9f6ae8 112 SUPERFAMILY SSF160113 55 109 9.94E-17 T 25-04-2017 IPR010879 Domain of unknown function DUF1508 A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 1.1E-265 T 25-04-2017 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 SUPERFAMILY SSF52540 333 580 1.92E-96 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 SUPERFAMILY SSF90123 14 327 6.28E-73 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 SMART SM00382 368 555 1.8E-18 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 Pfam PF00005 ABC transporter 359 509 1.3E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 Pfam PF00664 ABC transporter transmembrane region 27 297 4.3E-58 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 Gene3D G3DSA:1.20.1560.10 13 325 3.4E-68 T 25-04-2017 A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 Gene3D G3DSA:3.40.50.300 342 574 4.2E-86 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08340 2e67aa4983964f1a64632ed21be67e90 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS20110 1f6eb411f3ec0e5325f05d5ab2a05e97 218 SMART SM00934 6 208 3.1E-37 T 25-04-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS20110 1f6eb411f3ec0e5325f05d5ab2a05e97 218 Gene3D G3DSA:3.20.20.70 3 216 5.5E-79 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS20110 1f6eb411f3ec0e5325f05d5ab2a05e97 218 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 207 1.9E-33 T 25-04-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS20110 1f6eb411f3ec0e5325f05d5ab2a05e97 218 SUPERFAMILY SSF51366 4 216 5.01E-41 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 Pfam PF01343 Peptidase family S49 393 542 1.6E-50 T 25-04-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 Pfam PF01343 Peptidase family S49 141 292 1.0E-36 T 25-04-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 327 541 4.1E-54 T 25-04-2017 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 SUPERFAMILY SSF52096 212 287 1.37E-26 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 SUPERFAMILY SSF52096 35 181 1.37E-26 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 SUPERFAMILY SSF52096 468 530 2.57E-41 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 SUPERFAMILY SSF52096 322 440 2.57E-41 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 Gene3D G3DSA:3.90.226.10 30 177 3.2E-66 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 Gene3D G3DSA:3.90.226.10 469 558 2.0E-67 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 Gene3D G3DSA:3.90.226.10 220 316 3.2E-66 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 Gene3D G3DSA:3.90.226.10 323 432 2.0E-67 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 PIRSF PIRSF001217 8 618 1.4E-217 T 25-04-2017 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 A4U88_RS13315 2338879a2b884a505e8a3f93ca0ea5dd 618 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 609 2.9E-231 T 25-04-2017 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 301 2.0E-18 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 SMART SM00382 42 234 4.7E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 Pfam PF00005 ABC transporter 33 184 2.9E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 235 319 1.5E-25 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 SUPERFAMILY SSF52540 8 256 8.75E-71 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00450 b199d0a0cdbab7174e029aeada3c758d 329 Gene3D G3DSA:3.40.50.300 6 258 7.0E-79 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03750 3ac25ce0c11a2cd384dc33b71a76e6bd 167 Gene3D G3DSA:1.10.10.10 2 70 1.4E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03750 3ac25ce0c11a2cd384dc33b71a76e6bd 167 Hamap MF_01114 Regulatory protein RecX [recX]. 2 167 15.229 T 25-04-2017 IPR003783 Regulatory protein RecX GO:0006282 A4U88_RS03750 3ac25ce0c11a2cd384dc33b71a76e6bd 167 Pfam PF02631 RecX family 53 163 4.7E-33 T 25-04-2017 IPR003783 Regulatory protein RecX GO:0006282 A4U88_RS03750 3ac25ce0c11a2cd384dc33b71a76e6bd 167 Gene3D G3DSA:1.10.10.10 71 116 4.8E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03750 3ac25ce0c11a2cd384dc33b71a76e6bd 167 Gene3D G3DSA:1.10.10.10 117 165 2.6E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 249 5.2E-57 T 25-04-2017 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 TIGRFAM TIGR04316 dhbA_paeA: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 12 250 3.0E-110 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 Gene3D G3DSA:3.40.50.720 4 250 5.0E-74 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 8.7E-8 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 8.7E-8 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 8.7E-8 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 SUPERFAMILY SSF51735 4 250 8.95E-73 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 163 186 8.0E-57 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 228 247 8.0E-57 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 78 95 8.0E-57 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 98 118 8.0E-57 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 202 221 8.0E-57 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 PRINTS PR01397 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase signature 16 33 8.0E-57 T 25-04-2017 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GO:0008667|GO:0019290|GO:0055114 MetaCyc: PWY-5901 A4U88_RS15815 d6bf4a1a2622ec5109cdfee6e9f988f1 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 Pfam PF00171 Aldehyde dehydrogenase family 12 461 1.1E-116 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 7 489 1.2E-253 T 25-04-2017 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 Gene3D G3DSA:3.40.605.10 5 259 5.8E-73 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 SUPERFAMILY SSF53720 5 458 1.44E-122 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 Gene3D G3DSA:3.40.309.10 260 446 3.6E-39 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS13940 325b96edb15253643af87eba56dfaeb7 490 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 58.228 T 25-04-2017 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 7.5E-20 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 SUPERFAMILY SSF46689 2 75 1.85E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 SUPERFAMILY SSF48498 85 200 1.56E-14 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 Gene3D G3DSA:1.10.357.10 63 205 1.0E-18 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 200 8.1E-51 T 25-04-2017 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 Gene3D G3DSA:1.10.10.60 6 44 1.1E-22 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 Gene3D G3DSA:1.10.10.60 45 62 5.9E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.3E-11 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS05135 0953ea275218749b48dae0c9b70c8ec1 226 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.3E-11 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS22305 41b1f25fa34f86b5ca60f1aae5023954 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.797 T 25-04-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22305 41b1f25fa34f86b5ca60f1aae5023954 63 SUPERFAMILY SSF46561 1 61 1.07E-21 T 25-04-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22305 41b1f25fa34f86b5ca60f1aae5023954 63 Gene3D G3DSA:1.10.287.310 1 60 6.8E-28 T 25-04-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22305 41b1f25fa34f86b5ca60f1aae5023954 63 Pfam PF00831 Ribosomal L29 protein 4 60 3.6E-23 T 25-04-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22305 41b1f25fa34f86b5ca60f1aae5023954 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 25-04-2017 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22305 41b1f25fa34f86b5ca60f1aae5023954 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.6E-22 T 25-04-2017 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Gene3D G3DSA:3.40.50.150 446 715 6.1E-73 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Pfam PF02926 THUMP domain 34 164 5.7E-15 T 25-04-2017 IPR004114 THUMP domain GO:0003723 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Gene3D G3DSA:3.40.50.150 162 226 2.4E-30 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Gene3D G3DSA:3.40.50.150 267 329 2.4E-30 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 PIRSF PIRSF037618 11 717 1.0E-298 T 25-04-2017 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 318 324 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 16 716 32.669 T 25-04-2017 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 207 218 - T 25-04-2017 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 452 674 2.1E-19 T 25-04-2017 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 Pfam PF01170 Putative RNA methylase family UPF0020 174 387 4.6E-62 T 25-04-2017 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 SUPERFAMILY SSF53335 270 384 8.1E-41 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 SUPERFAMILY SSF53335 158 229 8.1E-41 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 SUPERFAMILY SSF53335 409 715 4.11E-68 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08495 e9607f37d6b0da05e4566c62d68365c3 720 SMART SM00981 68 166 1.0E-18 T 25-04-2017 IPR004114 THUMP domain GO:0003723 A4U88_RS17925 d84409373fc7b5888e8ac04edb508233 111 Gene3D G3DSA:2.60.120.10 20 107 4.6E-19 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS17925 d84409373fc7b5888e8ac04edb508233 111 SUPERFAMILY SSF51182 17 105 3.53E-14 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS17925 d84409373fc7b5888e8ac04edb508233 111 Pfam PF07883 Cupin domain 36 104 8.7E-10 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS22475 676534516d6f6b7256735ce80bd01683 260 SUPERFAMILY SSF54506 1 259 1.47E-68 T 25-04-2017 A4U88_RS22475 676534516d6f6b7256735ce80bd01683 260 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 235 2.7E-28 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS22475 676534516d6f6b7256735ce80bd01683 260 Gene3D G3DSA:3.10.310.10 4 125 4.7E-38 T 25-04-2017 A4U88_RS22475 676534516d6f6b7256735ce80bd01683 260 PIRSF PIRSF016184 1 260 6.6E-47 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS22475 676534516d6f6b7256735ce80bd01683 260 Pfam PF02567 Phenazine biosynthesis-like protein 9 250 1.5E-45 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS22475 676534516d6f6b7256735ce80bd01683 260 Gene3D G3DSA:3.10.310.10 126 248 8.1E-40 T 25-04-2017 A4U88_RS09040 fd97a87ecfdc3e02f8f4636862b7f6d3 125 Pfam PF13984 MsyB protein 3 125 2.2E-61 T 25-04-2017 IPR025729 MsyB protein A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 2.2E-123 T 25-04-2017 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 Pfam PF00005 ABC transporter 18 164 3.4E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 SUPERFAMILY SSF52540 3 244 6.81E-86 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 SMART SM00382 27 214 1.9E-18 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 Gene3D G3DSA:3.40.50.300 3 245 5.5E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17640 79c50fe9a0929835029ff6f1a43fe258 362 SUPERFAMILY SSF50331 239 326 2.27E-9 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 Pfam PF01207 Dihydrouridine synthase (Dus) 17 324 1.3E-94 T 25-04-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 Gene3D G3DSA:3.20.20.70 12 255 8.6E-76 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 SUPERFAMILY SSF51395 13 312 2.64E-72 T 25-04-2017 A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 9 330 53.07 T 25-04-2017 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 95 113 - T 25-04-2017 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 13 329 9.0E-164 T 25-04-2017 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 A4U88_RS21870 2c6fdd43123932db42f31826539fdf8d 336 PIRSF PIRSF006621 4 330 7.9E-71 T 25-04-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 PIRSF PIRSF000190 2 217 1.1E-81 T 25-04-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 4 217 3.7E-94 T 25-04-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 Gene3D G3DSA:2.30.110.10 21 217 1.3E-81 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 217 4.0E-19 T 25-04-2017 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 15 217 37.871 T 25-04-2017 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 187 200 - T 25-04-2017 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 SUPERFAMILY SSF50475 20 217 1.74E-66 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS10880 37c5c40933720fb9114ee0fcc096e9fa 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 121 4.4E-23 T 25-04-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 1.8E-41 T 25-04-2017 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 Pfam PF07650 KH domain 38 111 5.2E-19 T 25-04-2017 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 SMART SM00322 60 125 1.6E-6 T 25-04-2017 IPR004087 K Homology domain GO:0003676 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 SUPERFAMILY SSF54814 2 106 1.54E-37 T 25-04-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 Gene3D G3DSA:3.30.300.20 18 107 8.2E-34 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 25-04-2017 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 Gene3D G3DSA:3.30.1140.32 108 207 5.9E-48 T 25-04-2017 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 25-04-2017 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.213 T 25-04-2017 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 A4U88_RS22315 709bcd5dd1eb61d2b111c3d7271f6582 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 1.2E-100 T 25-04-2017 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 ProSitePatterns PS01095 Chitinases family 18 active site. 136 144 - T 25-04-2017 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 SUPERFAMILY SSF51055 449 497 2.75E-10 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 Gene3D G3DSA:2.10.10.20 450 498 5.1E-14 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 SMART SM00636 16 408 1.7E-104 T 25-04-2017 IPR011583 Chitinase II GO:0004568|GO:0006032 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 SUPERFAMILY SSF54556 292 379 2.33E-24 T 25-04-2017 IPR029070 Chitinase insertion domain A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 Gene3D G3DSA:3.10.50.10 294 382 7.4E-21 T 25-04-2017 IPR029070 Chitinase insertion domain A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 Pfam PF00704 Glycosyl hydrolases family 18 7 408 9.7E-84 T 25-04-2017 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 SUPERFAMILY SSF51445 4 291 6.53E-89 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 SUPERFAMILY SSF51445 379 436 6.53E-89 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 SMART SM00495 453 495 3.3E-8 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 Gene3D G3DSA:3.20.20.80 3 293 2.6E-79 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS17750 08137b37aaee5a7a22368170e121f9d2 499 Gene3D G3DSA:3.20.20.80 385 422 2.6E-79 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS13955 6e36e7ec06e8266c72909328b79e26e8 324 Pfam PF07859 alpha/beta hydrolase fold 90 296 5.6E-67 T 25-04-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 A4U88_RS13955 6e36e7ec06e8266c72909328b79e26e8 324 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 89 105 - T 25-04-2017 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 Reactome: R-HSA-163560 A4U88_RS13955 6e36e7ec06e8266c72909328b79e26e8 324 SUPERFAMILY SSF53474 36 323 1.79E-65 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS13955 6e36e7ec06e8266c72909328b79e26e8 324 Gene3D G3DSA:3.40.50.1820 7 324 7.5E-91 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 Gene3D G3DSA:1.10.10.60 247 290 4.0E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 SMART SM00342 209 292 2.5E-27 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 180 1.0E-43 T 25-04-2017 IPR009594 Transcription regulator HTH, AraC, N-terminal A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 Pfam PF12833 Helix-turn-helix domain 215 290 1.2E-21 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 Gene3D G3DSA:1.10.10.60 193 246 7.8E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 SUPERFAMILY SSF46689 192 243 7.77E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20800 0df072e13fa48deddbaac6984aca27a4 305 SUPERFAMILY SSF46689 245 293 6.72E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 PRINTS PR00045 Sigma-54 factor signature 186 203 3.0E-31 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 PRINTS PR00045 Sigma-54 factor signature 376 388 3.0E-31 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 PRINTS PR00045 Sigma-54 factor signature 392 403 3.0E-31 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 PRINTS PR00045 Sigma-54 factor signature 450 468 3.0E-31 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 9 474 1.8E-159 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 1.8E-15 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 PIRSF PIRSF000774 1 477 7.4E-152 T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 8.6E-70 T 25-04-2017 IPR007634 RNA polymerase sigma factor 54, DNA-binding A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21405 ecdfbcaca147060177329cd7ccce0820 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 8.4E-62 T 25-04-2017 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 A4U88_RS04710 5516679fd0efcf5db157dcf7d46d98b7 128 Pfam PF01850 PIN domain 5 120 3.5E-12 T 25-04-2017 IPR002716 PIN domain A4U88_RS04710 5516679fd0efcf5db157dcf7d46d98b7 128 SUPERFAMILY SSF88723 1 123 3.08E-20 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.9E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.9E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.9E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 57.699 T 25-04-2017 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 SUPERFAMILY SSF53850 93 290 2.17E-20 T 25-04-2017 A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 Gene3D G3DSA:3.40.190.10 92 196 4.3E-40 T 25-04-2017 A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 Pfam PF03466 LysR substrate binding domain 93 289 1.3E-14 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 5.7E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 SUPERFAMILY SSF46785 4 110 4.98E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 1.3E-111 T 25-04-2017 IPR017685 HTH-type transcriptional regulator ArgP A4U88_RS20050 8a3be8507215f5cc06298f08419e172f 297 Gene3D G3DSA:1.10.10.10 1 73 4.6E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:3.40.50.740 108 117 5.1E-4 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:3.40.50.740 149 205 5.1E-4 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Pfam PF01568 Molydopterin dinucleotide binding domain 1090 1204 6.8E-20 T 25-04-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:3.90.55.10 781 838 1.0E-6 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:4.10.1200.10 1 28 1.2E-17 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 SUPERFAMILY SSF53706 4 1072 0.0 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 SMART SM00926 43 105 4.1E-8 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:3.40.50.740 595 780 7.5E-62 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 2 1237 0.0 T 25-04-2017 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 25-04-2017 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:2.40.40.20 1057 1236 1.9E-44 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:3.40.228.10 218 336 1.7E-77 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:3.40.228.10 494 594 1.7E-77 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 779 796 - T 25-04-2017 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Gene3D G3DSA:2.20.25.90 52 98 2.5E-32 T 25-04-2017 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Pfam PF00384 Molybdopterin oxidoreductase 108 835 8.0E-173 T 25-04-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 SUPERFAMILY SSF50692 1082 1238 5.2E-47 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS14070 73342157f8bda30d22e2819b7d7a52c4 1253 Pfam PF14710 Respiratory nitrate reductase alpha N-terminal 3 40 4.1E-15 T 25-04-2017 IPR028189 Nitrate reductase, alpha subunit, N-terminal KEGG: 00910+1.7.99.4 A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 118 132 1.1E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 132 148 1.1E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 160 1.1E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 Pfam PF00196 Bacterial regulatory proteins, luxR family 117 162 2.5E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 Gene3D G3DSA:1.10.10.10 115 174 6.8E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 SMART SM00421 115 172 3.1E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS01465 fe7a85fdc8c2957e60e978bee763dc0f 180 SUPERFAMILY SSF46894 105 174 1.02E-13 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 Gene3D G3DSA:2.120.10.30 307 387 7.9E-10 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 Gene3D G3DSA:2.120.10.30 493 591 7.9E-10 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 Gene3D G3DSA:2.120.10.30 429 453 7.9E-10 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 Pfam PF05787 Bacterial protein of unknown function (DUF839) 58 598 4.8E-188 T 25-04-2017 IPR008557 Protein of unknown function DUF839 A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 SUPERFAMILY SSF101898 294 377 1.02E-13 T 25-04-2017 A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 SUPERFAMILY SSF101898 488 592 1.02E-13 T 25-04-2017 A4U88_RS03165 4e8116f67fbf7b10ceba4e2c1ed47fbe 629 SUPERFAMILY SSF101898 410 453 1.02E-13 T 25-04-2017 A4U88_RS06915 b3138936e6c63b764165265f9de6af39 140 PRINTS PR00502 NUDIX hydrolase family signature 36 50 8.6E-5 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS06915 b3138936e6c63b764165265f9de6af39 140 PRINTS PR00502 NUDIX hydrolase family signature 50 65 8.6E-5 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS06915 b3138936e6c63b764165265f9de6af39 140 Gene3D G3DSA:3.90.79.10 10 138 1.1E-18 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS06915 b3138936e6c63b764165265f9de6af39 140 Pfam PF00293 NUDIX domain 15 120 2.7E-15 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS06915 b3138936e6c63b764165265f9de6af39 140 SUPERFAMILY SSF55811 11 138 1.02E-22 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS06915 b3138936e6c63b764165265f9de6af39 140 ProSitePatterns PS00893 Nudix box signature. 41 62 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS16640 002de15aa222c9544ef4a36066c034ab 138 Gene3D G3DSA:3.10.180.10 4 136 1.1E-28 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS16640 002de15aa222c9544ef4a36066c034ab 138 SUPERFAMILY SSF54593 10 135 8.86E-26 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS16640 002de15aa222c9544ef4a36066c034ab 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 129 1.9E-9 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 SUPERFAMILY SSF51120 354 437 9.94E-9 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 PRINTS PR00313 NodO calcium binding signature 380 391 1.5E-8 T 25-04-2017 A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 PRINTS PR00313 NodO calcium binding signature 491 499 1.5E-8 T 25-04-2017 A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 PRINTS PR00313 NodO calcium binding signature 509 517 1.5E-8 T 25-04-2017 A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 PRINTS PR00313 NodO calcium binding signature 528 537 1.5E-8 T 25-04-2017 A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 SUPERFAMILY SSF51120 484 612 2.22E-15 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 Gene3D G3DSA:2.150.10.10 242 259 8.5E-9 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 Gene3D G3DSA:2.150.10.10 334 475 8.5E-9 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 Gene3D G3DSA:2.150.10.10 490 609 2.9E-13 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 Gene3D G3DSA:3.40.50.1820 171 234 1.8E-5 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 Gene3D G3DSA:3.40.50.1820 67 104 1.8E-5 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10835 43613bf83d187d877a056c0f0333d971 614 SUPERFAMILY SSF53474 131 280 4.16E-13 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 181 279 1.1E-13 T 25-04-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 Gene3D G3DSA:1.20.140.10 281 449 4.7E-40 T 25-04-2017 A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 Gene3D G3DSA:2.40.110.10 181 280 1.6E-19 T 25-04-2017 A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 SUPERFAMILY SSF47203 287 447 2.9E-39 T 25-04-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 402 421 - T 25-04-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 289 443 2.1E-29 T 25-04-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 A4U88_RS01705 29c31a8a05f281ad7d6e0cf02e79b808 542 SUPERFAMILY SSF56645 88 296 3.38E-30 T 25-04-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 SUPERFAMILY SSF53067 153 340 3.69E-50 T 25-04-2017 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 25-04-2017 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 Pfam PF06723 MreB/Mbl protein 11 338 1.4E-150 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 267 321 2.1E-35 T 25-04-2017 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 164 190 2.1E-35 T 25-04-2017 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.6E-171 T 25-04-2017 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.30.420.40 9 163 1.8E-46 T 25-04-2017 A4U88_RS21620 91284330558feeca01a3d001be0dbb5a 347 Gene3D G3DSA:3.90.640.10 191 263 8.7E-31 T 25-04-2017 A4U88_RS01100 98a37fd2984e2546c9f270c22721a74f 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 7.6E-168 T 25-04-2017 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 A4U88_RS01100 98a37fd2984e2546c9f270c22721a74f 316 SUPERFAMILY SSF52540 10 315 1.44E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01100 98a37fd2984e2546c9f270c22721a74f 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 243 5.2E-15 T 25-04-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 A4U88_RS01100 98a37fd2984e2546c9f270c22721a74f 316 PIRSF PIRSF000545 1 316 1.9E-146 T 25-04-2017 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 A4U88_RS01100 98a37fd2984e2546c9f270c22721a74f 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 187.036 T 25-04-2017 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 A4U88_RS01100 98a37fd2984e2546c9f270c22721a74f 316 Gene3D G3DSA:3.40.50.300 10 316 1.3E-107 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 Gene3D G3DSA:1.20.120.640 306 392 1.0E-28 T 25-04-2017 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 Pfam PF09190 DALR domain 341 402 1.6E-25 T 25-04-2017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 7.2E-30 T 25-04-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 7.2E-30 T 25-04-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 7.2E-30 T 25-04-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 7.2E-30 T 25-04-2017 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 4.0E-139 T 25-04-2017 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 SMART SM00840 341 402 3.4E-29 T 25-04-2017 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 SUPERFAMILY SSF47323 316 460 1.7E-43 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 SUPERFAMILY SSF52374 1 313 8.96E-99 T 25-04-2017 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 38.749 T 25-04-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 Gene3D G3DSA:3.40.50.620 19 305 1.3E-110 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05440 bf0bfb1771d5a684ec4c6735d672307c 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 1.4E-192 T 25-04-2017 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 SMART SM00345 7 66 5.2E-15 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 Pfam PF00155 Aminotransferase class I and II 146 446 9.8E-28 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 Gene3D G3DSA:1.10.10.10 2 67 1.3E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 1.7E-13 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 SUPERFAMILY SSF46785 1 70 2.93E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 Gene3D G3DSA:3.90.1150.10 347 466 1.5E-7 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 Gene3D G3DSA:3.40.640.10 145 346 1.2E-69 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS13985 23db07efcbb9e7865a29d5ddbc7b3ff1 472 SUPERFAMILY SSF53383 93 466 2.34E-94 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS10625 936f53b0e3c11556aebbba1e9104ca9b 348 SUPERFAMILY SSF51569 7 347 5.02E-131 T 25-04-2017 A4U88_RS10625 936f53b0e3c11556aebbba1e9104ca9b 348 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 4.8E-170 T 25-04-2017 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 A4U88_RS10625 936f53b0e3c11556aebbba1e9104ca9b 348 Gene3D G3DSA:3.20.20.70 8 347 1.1E-145 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS10625 936f53b0e3c11556aebbba1e9104ca9b 348 PIRSF PIRSF001361 1 348 1.2E-155 T 25-04-2017 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 A4U88_RS10625 936f53b0e3c11556aebbba1e9104ca9b 348 Pfam PF00793 DAHP synthetase I family 41 337 1.9E-103 T 25-04-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS11590 562f7b728c511793d490b17b6b29ce22 301 SUPERFAMILY SSF161098 60 263 2.75E-42 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11590 562f7b728c511793d490b17b6b29ce22 301 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 59 172 7.7E-17 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS11590 562f7b728c511793d490b17b6b29ce22 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 78 275 1.0E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11590 562f7b728c511793d490b17b6b29ce22 301 Gene3D G3DSA:1.10.3720.10 57 277 3.7E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 Gene3D G3DSA:1.10.10.10 1 85 2.0E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 SUPERFAMILY SSF53850 90 302 6.59E-42 T 25-04-2017 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 SUPERFAMILY SSF46785 2 83 1.9E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 Gene3D G3DSA:3.40.190.10 174 271 5.8E-25 T 25-04-2017 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.7E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 Gene3D G3DSA:3.40.190.10 90 173 1.9E-24 T 25-04-2017 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 Gene3D G3DSA:3.40.190.10 279 303 1.9E-24 T 25-04-2017 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14595 71bef7d9c9f64d59278ddd8198108280 310 Pfam PF03466 LysR substrate binding domain 96 301 9.3E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 ProSitePatterns PS00622 LuxR-type HTH domain signature. 182 209 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 SUPERFAMILY SSF75516 15 158 2.35E-34 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 182 1.7E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 198 1.7E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 198 210 1.7E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 SUPERFAMILY SSF46894 153 228 3.33E-18 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 Gene3D G3DSA:3.30.450.80 15 169 5.8E-36 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 Pfam PF03472 Autoinducer binding domain 22 152 3.0E-28 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 167 220 1.6E-16 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 Gene3D G3DSA:1.10.10.10 170 228 4.1E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23310 ab1e73e09a2c448b6ef07723e8c49ef0 233 SMART SM00421 165 222 1.3E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19920 7b355b66f5fdda9bd9dc7d9253c5621c 223 Gene3D G3DSA:3.20.20.70 4 221 1.3E-73 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS19920 7b355b66f5fdda9bd9dc7d9253c5621c 223 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 134 156 - T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS19920 7b355b66f5fdda9bd9dc7d9253c5621c 223 Pfam PF00834 Ribulose-phosphate 3 epimerase family 5 199 2.5E-61 T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS19920 7b355b66f5fdda9bd9dc7d9253c5621c 223 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 31 45 - T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS19920 7b355b66f5fdda9bd9dc7d9253c5621c 223 SUPERFAMILY SSF51366 3 218 7.85E-55 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.9E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 SUPERFAMILY SSF53850 88 292 2.71E-46 T 25-04-2017 A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 SUPERFAMILY SSF46785 7 111 3.04E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 Gene3D G3DSA:1.10.10.10 6 88 4.3E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 Gene3D G3DSA:3.40.190.10 89 174 2.4E-6 T 25-04-2017 A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 Pfam PF03466 LysR substrate binding domain 88 292 1.3E-44 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07440 393a06489fb0f32a542027bfc488cbbc 298 Gene3D G3DSA:3.40.190.10 175 260 8.5E-26 T 25-04-2017 A4U88_RS18130 254d11adf57127aa37453607861dda77 450 Pfam PF01136 Peptidase family U32 76 343 2.2E-95 T 25-04-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 A4U88_RS18130 254d11adf57127aa37453607861dda77 450 ProSitePatterns PS01276 Peptidase family U32 signature. 162 180 - T 25-04-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 A4U88_RS18130 254d11adf57127aa37453607861dda77 450 Pfam PF16325 Peptidase family U32 C-terminal domain 359 440 4.8E-23 T 25-04-2017 IPR032525 Peptidase family U32, C-terminal A4U88_RS20570 ec98b76a20eb16e15419e5c0b6ebb9c1 235 Pfam PF01168 Alanine racemase, N-terminal domain 7 230 4.5E-29 T 25-04-2017 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 A4U88_RS20570 ec98b76a20eb16e15419e5c0b6ebb9c1 235 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 25-04-2017 IPR011078 Uncharacterised protein family UPF0001 A4U88_RS20570 ec98b76a20eb16e15419e5c0b6ebb9c1 235 SUPERFAMILY SSF51419 1 228 2.75E-80 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS20570 ec98b76a20eb16e15419e5c0b6ebb9c1 235 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 2.7E-91 T 25-04-2017 IPR011078 Uncharacterised protein family UPF0001 A4U88_RS20570 ec98b76a20eb16e15419e5c0b6ebb9c1 235 Gene3D G3DSA:3.20.20.10 1 234 1.4E-93 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS20570 ec98b76a20eb16e15419e5c0b6ebb9c1 235 PIRSF PIRSF004848 1 235 2.4E-73 T 25-04-2017 IPR011078 Uncharacterised protein family UPF0001 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 SUPERFAMILY SSF52218 62 208 7.98E-43 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Gene3D G3DSA:3.40.50.80 456 600 1.1E-58 T 25-04-2017 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00369 Flavodoxin signature 169 188 2.6E-14 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00369 Flavodoxin signature 145 155 2.6E-14 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00369 Flavodoxin signature 113 124 2.6E-14 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00369 Flavodoxin signature 65 78 2.6E-14 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 SUPERFAMILY SSF63380 230 447 4.7E-65 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 600 52.346 T 25-04-2017 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Gene3D G3DSA:2.40.30.10 230 281 4.6E-40 T 25-04-2017 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Gene3D G3DSA:2.40.30.10 385 455 4.6E-40 T 25-04-2017 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Pfam PF00175 Oxidoreductase NAD-binding domain 458 564 2.8E-20 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PIRSF PIRSF000207 1 600 1.6E-277 T 25-04-2017 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 526 542 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 457 476 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 482 491 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 549 557 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 271 281 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 420 429 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 387 394 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 495 506 1.2E-28 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 10 600 1.1E-274 T 25-04-2017 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Gene3D G3DSA:1.20.990.10 282 384 2.1E-41 T 25-04-2017 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Gene3D G3DSA:3.40.50.360 58 210 7.5E-46 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Pfam PF00258 Flavodoxin 66 192 3.2E-30 T 25-04-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 Pfam PF00667 FAD binding domain 231 425 4.9E-28 T 25-04-2017 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 A4U88_RS03585 b66af19ab9b7a46aa6e92227d9d7ba56 600 SUPERFAMILY SSF52343 445 600 4.71E-52 T 25-04-2017 A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Gene3D G3DSA:1.10.10.160 114 190 1.7E-25 T 25-04-2017 IPR013986 DExx box DNA helicase domain A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 4.8E-76 T 25-04-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Gene3D G3DSA:3.40.50.300 552 642 2.6E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Gene3D G3DSA:3.40.50.300 286 387 2.6E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 25-04-2017 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 SUPERFAMILY SSF52540 4 642 5.1E-184 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Gene3D G3DSA:1.10.486.10 388 541 4.2E-50 T 25-04-2017 A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 7.6E-76 T 25-04-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Gene3D G3DSA:3.40.50.300 191 285 3.8E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00685 6cf0e19dca4b5936cdcac4237fa50eb5 720 Gene3D G3DSA:3.40.50.300 4 110 3.8E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 SUPERFAMILY SSF50129 4 176 1.35E-53 T 25-04-2017 IPR011032 GroES-like A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 137 6.7E-34 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 Pfam PF00107 Zinc-binding dehydrogenase 177 303 1.6E-17 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 SUPERFAMILY SSF51735 144 310 6.72E-25 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 Gene3D G3DSA:3.40.50.720 172 286 4.7E-23 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18145 29cc89edfaa5be05fe92564737b4b4f1 344 Gene3D G3DSA:3.90.180.10 2 171 4.5E-56 T 25-04-2017 IPR011032 GroES-like A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 2.8E-42 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 2.8E-42 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 2.8E-42 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 2.8E-42 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 2.8E-42 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 2.8E-42 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 163 1.3E-51 T 25-04-2017 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 Gene3D G3DSA:1.10.1040.10 184 330 2.3E-59 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 Gene3D G3DSA:3.40.50.720 24 182 8.8E-58 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 4.8E-53 T 25-04-2017 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.171 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 PIRSF PIRSF000114 1 336 4.2E-100 T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 SUPERFAMILY SSF51735 8 182 1.56E-52 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 SUPERFAMILY SSF48179 184 335 9.64E-58 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 Gene3D G3DSA:3.50.50.60 6 23 3.8E-4 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23665 ba19a47829b34a797c7536bcad9c47da 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 25-04-2017 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 142 9.6E-66 T 25-04-2017 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 9.0E-30 T 25-04-2017 IPR020784 Ribosomal protein L11, N-terminal A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 6.0E-25 T 25-04-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 SUPERFAMILY SSF54747 3 73 3.79E-30 T 25-04-2017 IPR020784 Ribosomal protein L11, N-terminal A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 Gene3D G3DSA:3.30.1550.10 2 72 8.2E-38 T 25-04-2017 IPR020784 Ribosomal protein L11, N-terminal A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 25-04-2017 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 Gene3D G3DSA:1.10.10.250 73 141 1.6E-31 T 25-04-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.634 T 25-04-2017 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-16 T 25-04-2017 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 SUPERFAMILY SSF46906 68 141 2.35E-26 T 25-04-2017 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 A4U88_RS01150 e114c2f58a91dd3f7d4473c9d3a620f1 142 SMART SM00649 9 141 6.1E-85 T 25-04-2017 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 Gene3D G3DSA:1.10.287.950 374 578 1.7E-61 T 25-04-2017 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 SUPERFAMILY SSF58104 326 607 9.94E-74 T 25-04-2017 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 Pfam PF16591 Helical bimodular sensor domain 47 274 2.0E-13 T 25-04-2017 IPR032255 Helical bimodular sensor domain A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 SMART SM00304 306 358 5.7E-7 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 SMART SM00283 359 606 1.9E-91 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 Pfam PF00672 HAMP domain 287 354 2.2E-15 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 418 605 7.3E-62 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 SMART SM01358 39 284 7.4E-38 T 25-04-2017 IPR032255 Helical bimodular sensor domain A4U88_RS00185 abf03757ba9358de4050b491e8289f88 642 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 384 406 - T 25-04-2017 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 SUPERFAMILY SSF52440 2 74 3.6E-15 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 Gene3D G3DSA:3.30.1490.20 94 154 3.9E-22 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 330 5.5E-111 T 25-04-2017 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 Gene3D G3DSA:3.40.50.20 1 69 1.7E-23 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 Pfam PF02222 ATP-grasp domain 88 254 2.1E-53 T 25-04-2017 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 Gene3D G3DSA:3.30.470.20 156 337 5.0E-63 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 SUPERFAMILY SSF51246 278 353 1.65E-21 T 25-04-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 33.688 T 25-04-2017 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 A4U88_RS05420 01a7c5f99b92045026e9b059a428c4b2 355 SUPERFAMILY SSF56059 79 274 9.19E-59 T 25-04-2017 A4U88_RS15935 716558ef0fa0626e7446f75bc6def9f2 299 SUPERFAMILY SSF54593 214 298 3.04E-5 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS15935 716558ef0fa0626e7446f75bc6def9f2 299 Gene3D G3DSA:3.10.180.10 196 297 4.2E-4 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS15935 716558ef0fa0626e7446f75bc6def9f2 299 Gene3D G3DSA:3.10.180.10 113 158 2.6E-6 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS15935 716558ef0fa0626e7446f75bc6def9f2 299 SUPERFAMILY SSF54593 81 160 5.2E-10 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 Pfam PF00664 ABC transporter transmembrane region 31 163 1.3E-7 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 Gene3D G3DSA:3.40.50.300 321 533 9.8E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 SMART SM00382 351 536 1.6E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 Pfam PF00005 ABC transporter 345 480 2.6E-24 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 SUPERFAMILY SSF90123 4 299 7.85E-26 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 SUPERFAMILY SSF52540 319 535 4.72E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 Gene3D G3DSA:1.20.1560.10 4 302 4.1E-19 T 25-04-2017 A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS19600 8588892b74a50e381b70eb33015b6fd9 550 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 2 529 2.3E-112 T 25-04-2017 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 A4U88_RS02080 88ee7c8212339d0ab3d948c37ae0b220 210 SMART SM00859 3 95 0.0046 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS02080 88ee7c8212339d0ab3d948c37ae0b220 210 Pfam PF13460 NAD(P)H-binding 8 191 2.1E-10 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02080 88ee7c8212339d0ab3d948c37ae0b220 210 Gene3D G3DSA:3.40.50.720 2 204 1.3E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02080 88ee7c8212339d0ab3d948c37ae0b220 210 SUPERFAMILY SSF51735 2 196 3.96E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 SUPERFAMILY SSF47240 7 163 1.91E-47 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 ProSitePatterns PS00819 Dps protein family signature 2. 70 84 - T 25-04-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 Pfam PF00210 Ferritin-like domain 24 163 4.1E-28 T 25-04-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 PIRSF PIRSF005900 1 163 1.5E-48 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 ProSitePatterns PS00818 Dps protein family signature 1. 44 60 - T 25-04-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 Gene3D G3DSA:1.20.1260.10 4 163 2.5E-60 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 44 60 5.5E-15 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 68 84 5.5E-15 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS13145 6bd68cafa94707bd66b82a3efd5d53c1 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 139 157 5.5E-15 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 SUPERFAMILY SSF53383 80 468 2.61E-97 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 Pfam PF00155 Aminotransferase class I and II 106 460 4.6E-38 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 6.1E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 SMART SM00345 7 66 6.0E-22 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 Gene3D G3DSA:1.10.10.10 1 67 2.1E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 Gene3D G3DSA:3.90.1150.10 353 468 2.1E-10 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 Gene3D G3DSA:3.40.640.10 138 352 2.9E-67 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS06935 db56f18c07b5c02cc02776e0c9056852 478 SUPERFAMILY SSF46785 1 70 5.44E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 2.1E-91 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 Gene3D G3DSA:1.10.287.950 284 488 1.2E-63 T 25-04-2017 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 SUPERFAMILY SSF58104 236 521 7.46E-76 T 25-04-2017 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 515 7.3E-67 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 Pfam PF00672 HAMP domain 196 263 2.7E-15 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 Pfam PF02203 Tar ligand binding domain homologue 1 175 1.4E-55 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 Gene3D G3DSA:1.20.120.30 35 181 1.8E-54 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 SMART SM00319 44 182 4.3E-58 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 SMART SM00304 216 268 7.9E-13 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 SUPERFAMILY SSF47170 25 182 1.96E-49 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 SMART SM00283 269 516 1.1E-96 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS14540 a3f25c7bc445c0a0f92e67c74ce96354 556 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 25-04-2017 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.0E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.0E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.0E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 SUPERFAMILY SSF53850 90 296 3.44E-43 T 25-04-2017 A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.6E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 SUPERFAMILY SSF46785 6 113 4.74E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 Gene3D G3DSA:1.10.10.10 5 89 6.7E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 Pfam PF03466 LysR substrate binding domain 89 291 9.9E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS03100 8c50ec6cdd259b6c3f4d63d2af308f0c 308 Gene3D G3DSA:3.40.190.10 93 192 6.1E-27 T 25-04-2017 A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 Gene3D G3DSA:3.40.50.300 4 230 6.7E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 Gene3D G3DSA:3.40.50.300 324 550 2.3E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 SUPERFAMILY SSF52540 6 228 5.23E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 Pfam PF00005 ABC transporter 27 166 1.0E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 Pfam PF00005 ABC transporter 347 490 2.7E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 SUPERFAMILY SSF52540 324 550 7.03E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 SMART SM00382 355 536 1.3E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06340 b166f05015d0ba9016f8ec18e6d96c41 578 SMART SM00382 33 241 4.9E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 8 440 4.0E-198 T 25-04-2017 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 PIRSF PIRSF000423 1 441 1.5E-209 T 25-04-2017 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 Pfam PF00583 Acetyltransferase (GNAT) family 345 413 1.6E-7 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 Pfam PF00696 Amino acid kinase family 25 267 5.0E-30 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 Gene3D G3DSA:3.40.630.30 293 438 5.1E-39 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 SUPERFAMILY SSF55729 296 419 5.15E-19 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 Gene3D G3DSA:3.40.1160.10 23 290 3.0E-68 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 SUPERFAMILY SSF53633 4 290 3.91E-69 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS19410 471a89928ebf9130a7986b77d4bde2b9 441 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 441 239.728 T 25-04-2017 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS00335 0bdff02cb9dd331ecafcfe7e6efb658d 170 Pfam PF06127 Protein of unknown function (DUF962) 1 145 1.3E-25 T 25-04-2017 IPR009305 Protein of unknown function DUF962 A4U88_RS04935 00da48603a3f742c778153d4df14482b 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 2.9E-54 T 25-04-2017 IPR005619 Uncharacterised protein family, YajG A4U88_RS06800 3bcef7c79bf9ab30b3c1d4e2f3015c70 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 271 7.3E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06800 3bcef7c79bf9ab30b3c1d4e2f3015c70 287 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 282 6.8E-83 T 25-04-2017 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 A4U88_RS06800 3bcef7c79bf9ab30b3c1d4e2f3015c70 287 Gene3D G3DSA:1.10.3720.10 89 282 1.2E-25 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06800 3bcef7c79bf9ab30b3c1d4e2f3015c70 287 SUPERFAMILY SSF161098 89 273 1.83E-31 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 Gene3D G3DSA:1.10.10.10 1 83 4.6E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.6E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.6E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.6E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 Gene3D G3DSA:3.40.190.10 179 264 3.9E-30 T 25-04-2017 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 Gene3D G3DSA:3.40.190.10 89 178 3.4E-18 T 25-04-2017 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 SUPERFAMILY SSF46785 1 112 1.43E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 Pfam PF03466 LysR substrate binding domain 89 295 6.4E-44 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.7E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18540 ced6776e974f7de56bfff5d76d08e1d7 307 SUPERFAMILY SSF53850 87 299 3.84E-39 T 25-04-2017 A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 Gene3D G3DSA:1.10.10.10 4 90 3.0E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 Pfam PF03466 LysR substrate binding domain 99 305 3.8E-25 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 Gene3D G3DSA:3.40.190.10 95 180 5.6E-21 T 25-04-2017 A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 Gene3D G3DSA:3.40.190.10 281 307 5.6E-21 T 25-04-2017 A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 SUPERFAMILY SSF46785 9 87 4.63E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 SUPERFAMILY SSF53850 95 305 3.08E-42 T 25-04-2017 A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 Gene3D G3DSA:3.40.190.10 181 277 1.6E-26 T 25-04-2017 A4U88_RS18830 2ede15bbc2611268e4504556b5ebd639 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 70 9.1E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 SUPERFAMILY SSF52777 385 626 1.02E-80 T 25-04-2017 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Pfam PF02817 e3 binding domain 324 359 5.1E-15 T 25-04-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Gene3D G3DSA:2.40.50.100 203 296 1.1E-21 T 25-04-2017 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Gene3D G3DSA:2.40.50.100 104 196 4.7E-22 T 25-04-2017 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 25-04-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 227 256 - T 25-04-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 25-04-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Gene3D G3DSA:2.40.50.100 3 78 2.2E-22 T 25-04-2017 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Pfam PF00364 Biotin-requiring enzyme 206 275 1.9E-21 T 25-04-2017 IPR000089 Biotin/lipoyl attachment A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Pfam PF00364 Biotin-requiring enzyme 106 175 1.0E-21 T 25-04-2017 IPR000089 Biotin/lipoyl attachment A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Pfam PF00364 Biotin-requiring enzyme 4 73 1.3E-21 T 25-04-2017 IPR000089 Biotin/lipoyl attachment A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 SUPERFAMILY SSF51230 1 93 7.98E-23 T 25-04-2017 IPR011053 Single hybrid motif A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Gene3D G3DSA:3.30.559.10 386 627 3.4E-84 T 25-04-2017 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 SUPERFAMILY SSF51230 104 196 1.31E-23 T 25-04-2017 IPR011053 Single hybrid motif A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 189 627 4.6E-227 T 25-04-2017 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 396 626 5.8E-80 T 25-04-2017 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 SUPERFAMILY SSF47005 319 363 5.89E-13 T 25-04-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 Gene3D G3DSA:4.10.320.10 317 364 1.4E-21 T 25-04-2017 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 A4U88_RS20475 6e4f3a3ea994124013af9141f98d9b8f 627 SUPERFAMILY SSF51230 204 296 3.4E-23 T 25-04-2017 IPR011053 Single hybrid motif A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 Gene3D G3DSA:3.40.190.10 11 127 2.4E-28 T 25-04-2017 A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 Gene3D G3DSA:3.40.190.10 271 324 2.4E-28 T 25-04-2017 A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 PIRSF PIRSF002825 4 338 1.7E-80 T 25-04-2017 IPR026045 Ferric binding protein A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 Gene3D G3DSA:3.40.190.10 132 270 2.5E-51 T 25-04-2017 A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 25-04-2017 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 SUPERFAMILY SSF53850 33 331 1.13E-74 T 25-04-2017 A4U88_RS12250 955fd57d296615d4f461268c28ba4d08 338 Pfam PF13343 Bacterial extracellular solute-binding protein 81 308 3.8E-25 T 25-04-2017 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.5E-21 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 Gene3D G3DSA:1.10.260.40 2 53 1.2E-25 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 SUPERFAMILY SSF53822 60 331 2.19E-90 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 Gene3D G3DSA:3.40.50.2300 176 311 1.9E-54 T 25-04-2017 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 SMART SM00354 1 71 5.1E-34 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 SUPERFAMILY SSF47413 2 59 9.01E-18 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 Gene3D G3DSA:3.40.50.2300 54 175 1.8E-43 T 25-04-2017 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 Pfam PF13377 Periplasmic binding protein-like domain 169 330 4.4E-44 T 25-04-2017 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.6E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS24025 1d236eb0228fd9be3ef32c92f3e0c3e7 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.6E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS17555 a8d71d84ddece5c703b83bced24cc93e 263 PIRSF PIRSF018982 1 253 1.8E-95 T 25-04-2017 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 A4U88_RS17555 a8d71d84ddece5c703b83bced24cc93e 263 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 8 242 1.9E-93 T 25-04-2017 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7 A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 60 71 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 SUPERFAMILY SSF54862 33 155 4.1E-29 T 25-04-2017 A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 1.6E-51 T 25-04-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 4.6E-12 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 Gene3D G3DSA:3.30.70.20 25 117 6.8E-19 T 25-04-2017 A4U88_RS16835 260131e7211bf2eadb9ccf64f830891e 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 1 147 27.049 T 25-04-2017 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS23000 3dcc1e6bbc4c897daefe063a5edb769f 203 Gene3D G3DSA:2.60.40.1090 36 202 3.0E-40 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23000 3dcc1e6bbc4c897daefe063a5edb769f 203 SUPERFAMILY SSF49401 37 202 3.68E-29 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS23000 3dcc1e6bbc4c897daefe063a5edb769f 203 Pfam PF00419 Fimbrial protein 46 202 6.5E-10 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 SUPERFAMILY SSF47413 3 60 1.19E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 Gene3D G3DSA:3.40.50.2300 175 276 2.1E-35 T 25-04-2017 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 7.1E-21 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 SUPERFAMILY SSF53822 63 314 5.89E-59 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.2E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.2E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 Gene3D G3DSA:1.10.260.40 6 56 9.3E-24 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 SMART SM00354 4 74 2.0E-33 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 Pfam PF13377 Periplasmic binding protein-like domain 168 311 1.3E-16 T 25-04-2017 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 25-04-2017 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 314 6.4E-148 T 25-04-2017 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 A4U88_RS02190 a8de1a97c73dce31c313bb23717c473e 315 Gene3D G3DSA:3.40.50.2300 57 174 1.0E-21 T 25-04-2017 A4U88_RS06730 3265b7d872d15f706d2977fcbce4a0a0 85 Gene3D G3DSA:3.30.1660.10 18 84 1.2E-25 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS06730 3265b7d872d15f706d2977fcbce4a0a0 85 SUPERFAMILY SSF159871 3 85 1.19E-24 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS06730 3265b7d872d15f706d2977fcbce4a0a0 85 Pfam PF07338 Protein of unknown function (DUF1471) 33 85 1.9E-18 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Pfam PF02321 Outer membrane efflux protein 58 245 8.6E-23 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Pfam PF02321 Outer membrane efflux protein 274 454 5.3E-30 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 SUPERFAMILY SSF56954 3 456 2.09E-97 T 25-04-2017 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Gene3D G3DSA:2.20.200.10 306 341 1.2E-19 T 25-04-2017 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Gene3D G3DSA:2.20.200.10 93 132 1.2E-19 T 25-04-2017 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Gene3D G3DSA:1.20.1600.10 343 456 1.1E-87 T 25-04-2017 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Gene3D G3DSA:1.20.1600.10 44 83 1.1E-87 T 25-04-2017 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 Gene3D G3DSA:1.20.1600.10 133 305 1.1E-87 T 25-04-2017 A4U88_RS12065 d9d1189111f1a2167cfbea81a67a882f 475 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 5 456 3.6E-113 T 25-04-2017 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 A4U88_RS22775 037d2b590fd5fcb0bbcf43e949b71dd1 256 SUPERFAMILY SSF53474 4 255 6.8E-47 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS22775 037d2b590fd5fcb0bbcf43e949b71dd1 256 Pfam PF00561 alpha/beta hydrolase fold 16 242 2.8E-24 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS22775 037d2b590fd5fcb0bbcf43e949b71dd1 256 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 253 1.1E-101 T 25-04-2017 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 A4U88_RS22775 037d2b590fd5fcb0bbcf43e949b71dd1 256 Gene3D G3DSA:3.40.50.1820 4 254 8.0E-54 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS22775 037d2b590fd5fcb0bbcf43e949b71dd1 256 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 47.685 T 25-04-2017 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 41.224 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 SUPERFAMILY SSF55681 116 425 1.18E-99 T 25-04-2017 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 SUPERFAMILY SSF46589 1 112 1.99E-29 T 25-04-2017 IPR010978 tRNA-binding arm GO:0000166 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 228 406 4.4E-36 T 25-04-2017 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.0E-29 T 25-04-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 PIRSF PIRSF001529 1 430 4.8E-180 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 6.6E-178 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 Gene3D G3DSA:3.30.930.10 105 427 5.0E-141 T 25-04-2017 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 4.9E-34 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 4.9E-34 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 4.9E-34 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 4.9E-34 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 4.9E-34 T 25-04-2017 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS08270 a6f5077adaaa1e42f022a649dca8f977 430 Gene3D G3DSA:1.10.287.40 1 104 1.8E-24 T 25-04-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.4E-38 T 25-04-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 SMART SM00878 336 441 4.7E-64 T 25-04-2017 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 SUPERFAMILY SSF52440 1 113 1.08E-46 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS21655 d8997b46162c2285db362657ec865634 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 3.3E-44 T 25-04-2017 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 3.3E-86 T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 1.3E-250 T 25-04-2017 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 Gene3D G3DSA:3.30.1490.20 130 203 4.0E-31 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 Gene3D G3DSA:3.40.50.20 1 129 8.3E-51 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS21655 d8997b46162c2285db362657ec865634 449 Gene3D G3DSA:3.30.470.20 204 444 1.9E-100 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 SUPERFAMILY SSF56059 83 347 8.25E-70 T 25-04-2017 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS21655 d8997b46162c2285db362657ec865634 449 SUPERFAMILY SSF51246 331 444 2.62E-43 T 25-04-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 25-04-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 Pfam PF00483 Nucleotidyl transferase 22 291 9.1E-69 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.6E-157 T 25-04-2017 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 SUPERFAMILY SSF51161 313 415 1.77E-19 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 53.251 T 25-04-2017 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 25-04-2017 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622 A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 Gene3D G3DSA:3.90.550.10 22 301 8.7E-79 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 Gene3D G3DSA:3.90.550.10 344 386 8.7E-79 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 SUPERFAMILY SSF53448 378 392 2.01E-77 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS22840 95b7acce60eb422959234b33249de08c 425 SUPERFAMILY SSF53448 20 294 2.01E-77 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS05210 fcb1a8ef85f208f45ccb55d5af54ba45 387 Gene3D G3DSA:3.90.1510.10 46 279 1.4E-98 T 25-04-2017 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 A4U88_RS05210 fcb1a8ef85f208f45ccb55d5af54ba45 387 Pfam PF02595 Glycerate kinase family 7 378 1.4E-154 T 25-04-2017 IPR004381 Glycerate kinase GO:0008887|GO:0031388 A4U88_RS05210 fcb1a8ef85f208f45ccb55d5af54ba45 387 SUPERFAMILY SSF110738 6 379 1.96E-144 T 25-04-2017 IPR004381 Glycerate kinase GO:0008887|GO:0031388 A4U88_RS05210 fcb1a8ef85f208f45ccb55d5af54ba45 387 PIRSF PIRSF006078 5 381 1.4E-140 T 25-04-2017 IPR004381 Glycerate kinase GO:0008887|GO:0031388 A4U88_RS05210 fcb1a8ef85f208f45ccb55d5af54ba45 387 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 6 379 5.2E-164 T 25-04-2017 IPR004381 Glycerate kinase GO:0008887|GO:0031388 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 2.7E-53 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 SUPERFAMILY SSF118215 8 412 1.83E-125 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 25-04-2017 IPR018107 Sodium:dicarboxylate symporter, conserved site A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 2.3E-120 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 Gene3D G3DSA:1.10.3860.10 4 416 1.1E-132 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS01320 00932729ad6b86c0fc30777e1d007ce5 438 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 25-04-2017 IPR018107 Sodium:dicarboxylate symporter, conserved site A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 ProSitePatterns PS01081 TetR-type HTH domain signature. 34 64 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.8E-7 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.8E-7 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 Pfam PF09209 Domain of unknown function (DUF1956) 101 225 2.2E-35 T 25-04-2017 IPR015292 Transcription regulator YbiH, C-terminal A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 Gene3D G3DSA:1.10.357.10 60 230 7.2E-61 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 SUPERFAMILY SSF46689 12 88 2.15E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 SUPERFAMILY SSF48498 99 223 1.91E-32 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 Gene3D G3DSA:1.10.10.60 12 59 3.5E-23 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06350 05f70c1663f5028942be6c1a19ec88d6 232 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 7.3E-15 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS07350 f2eb09042734d1b6b55cdfeb454f32ec 679 ProSitePatterns PS01303 BCCT family of transporters signature. 320 329 - T 25-04-2017 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS07350 f2eb09042734d1b6b55cdfeb454f32ec 679 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 503 5.7E-176 T 25-04-2017 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 A4U88_RS07350 f2eb09042734d1b6b55cdfeb454f32ec 679 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 504 9.2E-176 T 25-04-2017 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 1.4E-85 T 25-04-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 Gene3D G3DSA:3.40.192.10 68 188 3.3E-62 T 25-04-2017 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 Gene3D G3DSA:1.10.285.10 5 67 1.6E-28 T 25-04-2017 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 Gene3D G3DSA:1.10.285.10 373 446 2.5E-24 T 25-04-2017 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 3.1E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 3.1E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 3.1E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 3.1E-32 T 25-04-2017 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 Gene3D G3DSA:3.40.50.720 209 372 2.7E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 PIRSF PIRSF000185 23 447 7.2E-115 T 25-04-2017 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 SUPERFAMILY SSF51735 202 446 9.05E-74 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 25-04-2017 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 SUPERFAMILY SSF53223 7 196 2.78E-74 T 25-04-2017 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 4.5E-50 T 25-04-2017 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS23140 a191277db3f742e44d0f206821d4046c 447 SMART SM00839 204 445 5.1E-93 T 25-04-2017 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 A4U88_RS03600 9f54e84dc6cd4ad8c89ee1a5d57c933c 356 Gene3D G3DSA:3.40.630.10 39 348 9.4E-50 T 25-04-2017 A4U88_RS03600 9f54e84dc6cd4ad8c89ee1a5d57c933c 356 SUPERFAMILY SSF53187 45 319 5.47E-41 T 25-04-2017 A4U88_RS03600 9f54e84dc6cd4ad8c89ee1a5d57c933c 356 Pfam PF04389 Peptidase family M28 104 326 5.2E-33 T 25-04-2017 IPR007484 Peptidase M28 A4U88_RS10720 e4560f7f410771c708b24696336d599b 101 Gene3D G3DSA:2.60.120.10 7 97 1.4E-10 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS10720 e4560f7f410771c708b24696336d599b 101 SUPERFAMILY SSF51182 12 97 3.05E-9 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 Gene3D G3DSA:3.40.50.2300 4 132 2.0E-26 T 25-04-2017 A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 PIRSF PIRSF006171 2 227 3.2E-74 T 25-04-2017 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 SUPERFAMILY SSF52172 3 190 1.37E-30 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 SMART SM00448 4 117 4.6E-23 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 Pfam PF12431 Transcriptional regulator 133 161 2.1E-9 T 25-04-2017 IPR028141 Transcriptional regulator A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 Gene3D G3DSA:1.10.10.10 169 197 1.0E-4 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15870 c631ed2fdb471b380dd8413055a58568 228 Pfam PF00072 Response regulator receiver domain 6 117 3.2E-20 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17110 ed88fc7b332a7a6ec0780821b06e5429 678 Gene3D G3DSA:3.40.30.10 561 666 2.3E-13 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17110 ed88fc7b332a7a6ec0780821b06e5429 678 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 285 489 6.7E-10 T 25-04-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 A4U88_RS17110 ed88fc7b332a7a6ec0780821b06e5429 678 SUPERFAMILY SSF52833 554 669 1.17E-11 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17110 ed88fc7b332a7a6ec0780821b06e5429 678 Pfam PF13899 Thioredoxin-like 563 648 1.5E-13 T 25-04-2017 A4U88_RS17110 ed88fc7b332a7a6ec0780821b06e5429 678 Pfam PF11412 Disulphide bond corrector protein DsbC 42 146 1.8E-16 T 25-04-2017 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain A4U88_RS14440 38bce51338d22d0058c2b2b75abcb4cc 251 Pfam PF00460 Flagella basal body rod protein 5 35 1.3E-9 T 25-04-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 A4U88_RS14440 38bce51338d22d0058c2b2b75abcb4cc 251 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 120 4.7E-33 T 25-04-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G A4U88_RS14440 38bce51338d22d0058c2b2b75abcb4cc 251 SUPERFAMILY SSF117143 77 209 5.62E-18 T 25-04-2017 A4U88_RS14440 38bce51338d22d0058c2b2b75abcb4cc 251 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 247 3.9E-21 T 25-04-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 SUPERFAMILY SSF52777 182 417 2.89E-22 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 SUPERFAMILY SSF47336 958 1023 1.57E-12 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Gene3D G3DSA:3.40.50.980 621 768 3.6E-35 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 SUPERFAMILY SSF56801 437 972 4.97E-94 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Gene3D G3DSA:3.30.300.30 854 966 6.0E-13 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Pfam PF00668 Condensation domain 6 287 2.5E-37 T 25-04-2017 IPR001242 Condensation domain A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 SUPERFAMILY SSF52777 9 174 9.89E-31 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 ProSitePatterns PS00455 Putative AMP-binding domain signature. 598 609 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Pfam PF00550 Phosphopantetheine attachment site 974 1022 5.4E-12 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Pfam PF00501 AMP-binding enzyme 446 849 1.2E-58 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 ProSitePatterns PS00012 Phosphopantetheine attachment site. 981 996 - T 25-04-2017 IPR006162 Phosphopantetheine attachment site A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 SMART SM00823 Phosphopantetheine attachment site 961 1026 8.0E-6 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Gene3D G3DSA:2.30.38.10 769 849 1.5E-15 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Gene3D G3DSA:3.40.50.980 440 612 2.9E-16 T 25-04-2017 A4U88_RS11275 cdd09f2452ac0bf702ce700a21d3ea19 1268 Gene3D G3DSA:1.10.1200.10 967 1025 4.2E-14 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 Gene3D G3DSA:2.40.50.100 239 287 1.8E-21 T 25-04-2017 A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 SUPERFAMILY SSF52540 4 243 6.55E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 Gene3D G3DSA:3.40.50.300 3 236 1.2E-75 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 SMART SM00382 28 211 1.3E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 Pfam PF08402 TOBE domain 281 353 1.4E-11 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 Pfam PF00005 ABC transporter 20 161 4.4E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 SUPERFAMILY SSF50331 236 362 1.24E-31 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS21955 c4548cf6dc8800b7bf71eeb47e2f6a24 369 Gene3D G3DSA:2.40.50.140 288 345 6.7E-26 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS17865 147269e6438c91536e05a80ddb094e95 61 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 61 26.444 T 25-04-2017 IPR020910 Uncharacterised protein family UPF0370 A4U88_RS17865 147269e6438c91536e05a80ddb094e95 61 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 61 9.9E-37 T 25-04-2017 IPR020910 Uncharacterised protein family UPF0370 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 Pfam PF00072 Response regulator receiver domain 8 119 1.0E-29 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 1.0E-15 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 1.0E-15 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 1.0E-15 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 SUPERFAMILY SSF46894 130 207 8.16E-23 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 Gene3D G3DSA:3.40.50.2300 3 148 5.2E-39 T 25-04-2017 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 SMART SM00421 147 204 1.4E-25 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 3.5E-23 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 SMART SM00448 6 119 5.0E-34 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 SUPERFAMILY SSF52172 5 137 3.27E-35 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS17820 e5b9a27b93c021a0c09b32a2c0f9d2ad 210 Gene3D G3DSA:1.10.10.10 149 207 3.9E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18160 5db1c5af3622f37b3e9bba4c2877b4f6 443 Pfam PF07690 Major Facilitator Superfamily 252 436 3.8E-18 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18160 5db1c5af3622f37b3e9bba4c2877b4f6 443 Pfam PF00083 Sugar (and other) transporter 25 238 4.8E-26 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS18160 5db1c5af3622f37b3e9bba4c2877b4f6 443 Gene3D G3DSA:1.20.1250.20 23 221 9.2E-23 T 25-04-2017 A4U88_RS18160 5db1c5af3622f37b3e9bba4c2877b4f6 443 Gene3D G3DSA:1.20.1250.20 256 437 7.5E-24 T 25-04-2017 A4U88_RS18160 5db1c5af3622f37b3e9bba4c2877b4f6 443 ProSitePatterns PS00216 Sugar transport proteins signature 1. 300 317 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS18160 5db1c5af3622f37b3e9bba4c2877b4f6 443 SUPERFAMILY SSF103473 15 436 5.89E-65 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 107 271 4.0E-64 T 25-04-2017 IPR029345 Maltose transport system permease protein MalF, P2 domain A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 Gene3D G3DSA:2.40.430.10 125 204 1.6E-32 T 25-04-2017 A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 SUPERFAMILY SSF160964 22 271 3.53E-83 T 25-04-2017 A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 309 512 1.8E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 SUPERFAMILY SSF161098 272 514 1.06E-59 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 Gene3D G3DSA:1.20.58.370 10 102 4.2E-39 T 25-04-2017 A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 Gene3D G3DSA:3.10.650.10 205 280 6.0E-37 T 25-04-2017 A4U88_RS21975 c99b6598d9bd7869dbfdc43d5ca65ced 525 Gene3D G3DSA:1.10.3720.10 286 521 4.1E-61 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09035 fd49545069eb5f17dbbe8a860dcda8fb 181 SUPERFAMILY SSF55729 1 162 1.55E-14 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09035 fd49545069eb5f17dbbe8a860dcda8fb 181 Gene3D G3DSA:3.40.630.30 1 155 1.1E-13 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS14975 b18674f115b247664035e0e01d3fc734 99 Gene3D G3DSA:1.10.260.40 7 71 2.8E-13 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS14975 b18674f115b247664035e0e01d3fc734 99 Pfam PF13560 Helix-turn-helix domain 6 53 1.0E-9 T 25-04-2017 A4U88_RS14975 b18674f115b247664035e0e01d3fc734 99 SMART SM00530 8 65 1.1E-6 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS14975 b18674f115b247664035e0e01d3fc734 99 SUPERFAMILY SSF47413 5 57 8.58E-12 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 Gene3D G3DSA:3.40.190.10 84 188 3.0E-17 T 25-04-2017 A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 Pfam PF03466 LysR substrate binding domain 85 281 1.5E-38 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 SUPERFAMILY SSF46785 1 84 2.29E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 Gene3D G3DSA:3.40.190.10 189 255 2.2E-10 T 25-04-2017 A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.4E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 Gene3D G3DSA:1.10.10.10 1 80 1.2E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12795 c1a67533df1f0a77060153fdb6d12cd3 284 SUPERFAMILY SSF53850 86 282 2.33E-33 T 25-04-2017 A4U88_RS00045 0adb19ad28124a1051b858d4af0fd949 115 Pfam PF07119 Protein of unknown function (DUF1375) 13 75 1.1E-14 T 25-04-2017 IPR010780 Protein of unknown function DUF1375 A4U88_RS23085 f12428dcd79718c0d6aa9992a8589a12 138 SUPERFAMILY SSF55961 1 132 7.34E-35 T 25-04-2017 A4U88_RS23085 f12428dcd79718c0d6aa9992a8589a12 138 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 1 132 3.3E-27 T 25-04-2017 IPR019587 Polyketide cyclase/dehydrase A4U88_RS23085 f12428dcd79718c0d6aa9992a8589a12 138 Gene3D G3DSA:3.30.530.20 1 133 3.3E-45 T 25-04-2017 IPR023393 START-like domain A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 Gene3D G3DSA:3.90.1280.10 226 282 2.6E-25 T 25-04-2017 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 SUPERFAMILY SSF118352 225 282 6.67E-21 T 25-04-2017 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 Pfam PF01430 Hsp33 protein 5 273 1.4E-87 T 25-04-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 SUPERFAMILY SSF64397 4 232 2.88E-78 T 25-04-2017 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 PIRSF PIRSF005261 1 283 3.5E-75 T 25-04-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 Gene3D G3DSA:3.55.30.10 2 176 1.3E-67 T 25-04-2017 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 Hamap MF_00117 33 kDa chaperonin [hslO]. 4 284 33.366 T 25-04-2017 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 A4U88_RS22705 ca540b1672e3007e481befb990926e9e 292 Gene3D G3DSA:1.10.287.480 178 225 1.4E-26 T 25-04-2017 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain A4U88_RS03450 47edf7c7044c5e79151fdf7d1b9f3f5f 145 Pfam PF00114 Pilin (bacterial filament) 36 120 1.2E-4 T 25-04-2017 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 A4U88_RS03450 47edf7c7044c5e79151fdf7d1b9f3f5f 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 1.1E-10 T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS03450 47edf7c7044c5e79151fdf7d1b9f3f5f 145 Gene3D G3DSA:3.30.700.10 7 129 2.8E-33 T 25-04-2017 A4U88_RS03450 47edf7c7044c5e79151fdf7d1b9f3f5f 145 Pfam PF13633 Prokaryotic N-terminal methylation site 4 30 2.1E-12 T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS03450 47edf7c7044c5e79151fdf7d1b9f3f5f 145 SUPERFAMILY SSF54523 7 115 2.51E-22 T 25-04-2017 A4U88_RS03450 47edf7c7044c5e79151fdf7d1b9f3f5f 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS14515 a30eb370ad4629212feab67746646296 214 Gene3D G3DSA:1.20.5.590 1 34 6.4E-16 T 25-04-2017 A4U88_RS14515 a30eb370ad4629212feab67746646296 214 Gene3D G3DSA:1.10.287.500 35 168 5.2E-57 T 25-04-2017 A4U88_RS14515 a30eb370ad4629212feab67746646296 214 PIRSF PIRSF002884 5 214 6.6E-85 T 25-04-2017 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 A4U88_RS14515 a30eb370ad4629212feab67746646296 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 16 214 6.4E-77 T 25-04-2017 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 A4U88_RS14515 a30eb370ad4629212feab67746646296 214 SUPERFAMILY SSF75708 14 213 1.96E-66 T 25-04-2017 A4U88_RS06535 b7db788187470282f08a13e7dffba2f5 155 SUPERFAMILY SSF51161 17 154 7.86E-32 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS06535 b7db788187470282f08a13e7dffba2f5 155 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 31 64 5.3E-7 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS06535 b7db788187470282f08a13e7dffba2f5 155 Gene3D G3DSA:2.160.10.10 15 154 1.0E-33 T 25-04-2017 A4U88_RS06535 b7db788187470282f08a13e7dffba2f5 155 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 104 135 1.6E-5 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS01495 0b838722d41155cae5251233070eafef 572 SUPERFAMILY SSF52833 452 569 1.97E-24 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS01495 0b838722d41155cae5251233070eafef 572 SUPERFAMILY SSF74863 32 145 9.42E-42 T 25-04-2017 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain A4U88_RS01495 0b838722d41155cae5251233070eafef 572 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 177 382 2.3E-21 T 25-04-2017 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 A4U88_RS01495 0b838722d41155cae5251233070eafef 572 ProSitePatterns PS00194 Thioredoxin family active site. 479 497 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS01495 0b838722d41155cae5251233070eafef 572 Pfam PF13899 Thioredoxin-like 468 544 3.9E-14 T 25-04-2017 A4U88_RS01495 0b838722d41155cae5251233070eafef 572 Gene3D G3DSA:3.40.30.10 460 571 7.9E-35 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS01495 0b838722d41155cae5251233070eafef 572 Gene3D G3DSA:2.60.40.1250 30 146 1.8E-46 T 25-04-2017 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain A4U88_RS01495 0b838722d41155cae5251233070eafef 572 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 571 39.914 T 25-04-2017 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 A4U88_RS01495 0b838722d41155cae5251233070eafef 572 Pfam PF11412 Disulphide bond corrector protein DsbC 34 143 6.7E-35 T 25-04-2017 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 429 536 3.88E-23 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 361 434 9.3E-22 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 103 171 3.9E-10 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-20 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 449 520 7.2E-17 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Pfam PF00575 S1 RNA binding domain 20 78 1.6E-6 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 362 444 1.25E-20 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 189 277 3.88E-27 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 103 185 1.72E-14 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 2.5E-99 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 21 101 8.5E-11 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 192 274 6.6E-31 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 255 371 1.65E-31 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 358 443 6.2E-25 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 275 357 4.8E-30 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SUPERFAMILY SSF50249 1 112 3.51E-19 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 190 260 2.8E-28 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 103 171 5.9E-9 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 19 87 1.3E-4 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 275 347 2.2E-27 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 362 434 3.4E-21 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 SMART SM00316 449 520 7.2E-22 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 102 172 1.4E-15 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 Gene3D G3DSA:2.40.50.140 444 521 4.9E-21 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.7E-240 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS08325 0dde29ab38c3ac8568bed45cf34e20b5 557 PIRSF PIRSF002111 1 534 4.4E-221 T 25-04-2017 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS05815 0917ed5bf69cf8963c41fa5d73698c0b 148 SUPERFAMILY SSF46785 8 134 2.96E-43 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05815 0917ed5bf69cf8963c41fa5d73698c0b 148 Pfam PF01475 Ferric uptake regulator family 10 130 6.6E-48 T 25-04-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 A4U88_RS05815 0917ed5bf69cf8963c41fa5d73698c0b 148 Gene3D G3DSA:1.10.10.10 4 82 5.5E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Gene3D G3DSA:1.20.1110.10 608 890 3.0E-69 T 25-04-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Gene3D G3DSA:1.20.1110.10 75 138 3.0E-69 T 25-04-2017 IPR023298 P-type ATPase, transmembrane domain Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Gene3D G3DSA:3.40.1110.10 361 546 8.4E-30 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Pfam PF00122 E1-E2 ATPase 111 360 3.9E-54 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 371 377 - T 25-04-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SMART SM00831 22 95 2.0E-21 T 25-04-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SUPERFAMILY SSF56784 367 387 6.18E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SUPERFAMILY SSF56784 492 738 6.18E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 747 760 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 697 712 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 802 823 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 403 416 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 282 298 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 299 318 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 767 783 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 715 726 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 PRINTS PR01836 Magnesium-transporting ATPase signature 852 873 2.1E-89 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 22 898 0.0 T 25-04-2017 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 264 407 1.3E-19 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 600 728 8.8E-29 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Pfam PF00690 Cation transporter/ATPase, N-terminus 24 90 9.6E-16 T 25-04-2017 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Pfam PF00702 haloacid dehalogenase-like hydrolase 365 653 1.3E-18 T 25-04-2017 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SUPERFAMILY SSF81653 160 269 3.4E-24 T 25-04-2017 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Gene3D G3DSA:2.70.150.10 39 74 4.9E-36 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Gene3D G3DSA:2.70.150.10 139 270 4.9E-36 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 Pfam PF00689 Cation transporting ATPase, C-terminus 722 890 1.7E-17 T 25-04-2017 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SUPERFAMILY SSF81665 270 363 4.84E-102 T 25-04-2017 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SUPERFAMILY SSF81665 688 896 4.84E-102 T 25-04-2017 A4U88_RS14925 077e89f51c0f72ba9558672936d78604 899 SUPERFAMILY SSF81665 24 144 4.84E-102 T 25-04-2017 A4U88_RS06480 bad1f4900e10b7853a01e199c7008df6 309 SUPERFAMILY SSF56601 5 280 4.17E-59 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS06480 bad1f4900e10b7853a01e199c7008df6 309 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 36 264 7.1E-80 T 25-04-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 A4U88_RS06480 bad1f4900e10b7853a01e199c7008df6 309 Gene3D G3DSA:3.40.710.10 32 280 1.1E-65 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS06480 bad1f4900e10b7853a01e199c7008df6 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 69 80 2.6E-13 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS06480 bad1f4900e10b7853a01e199c7008df6 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 146 159 2.6E-13 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS06480 bad1f4900e10b7853a01e199c7008df6 309 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 2.6E-13 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 Gene3D G3DSA:3.40.50.300 498 674 2.0E-21 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 3.8E-67 T 25-04-2017 IPR022161 DNA helicase IV, N-terminal domain A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 Pfam PF13361 UvrD-like helicase C-terminal domain 571 659 2.2E-12 T 25-04-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 488 3.7E-39 T 25-04-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 Gene3D G3DSA:3.40.50.300 395 492 5.8E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 Gene3D G3DSA:3.40.50.300 196 329 5.8E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 SUPERFAMILY SSF52540 195 348 4.8E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08580 6a92321eab0e0bdda7f8aad0520d261c 684 SUPERFAMILY SSF52540 385 675 4.8E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13685 eb649eebe29cb73a453e4a1aefb3aee0 306 SUPERFAMILY SSF51735 3 138 1.14E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13685 eb649eebe29cb73a453e4a1aefb3aee0 306 SUPERFAMILY SSF55347 123 264 3.17E-44 T 25-04-2017 A4U88_RS13685 eb649eebe29cb73a453e4a1aefb3aee0 306 Gene3D G3DSA:3.30.360.10 130 304 1.9E-65 T 25-04-2017 A4U88_RS13685 eb649eebe29cb73a453e4a1aefb3aee0 306 Gene3D G3DSA:3.40.50.720 1 129 1.9E-35 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13685 eb649eebe29cb73a453e4a1aefb3aee0 306 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 121 2.6E-24 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Gene3D G3DSA:2.40.30.10 312 412 6.3E-38 T 25-04-2017 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SUPERFAMILY SSF52540 6 287 3.16E-106 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SUPERFAMILY SSF54980 611 700 7.19E-27 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Gene3D G3DSA:3.30.70.870 413 487 7.9E-39 T 25-04-2017 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 187 4.0E-32 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SUPERFAMILY SSF50447 271 411 5.3E-35 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Gene3D G3DSA:3.40.50.300 7 293 2.5E-104 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 703 0.0 T 25-04-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Gene3D G3DSA:3.30.70.240 610 696 7.5E-32 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 6.3E-67 T 25-04-2017 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 111.681 T 25-04-2017 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Pfam PF03764 Elongation factor G, domain IV 486 609 5.8E-44 T 25-04-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SUPERFAMILY SSF54980 411 488 3.02E-25 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Gene3D G3DSA:3.30.230.10 491 609 1.2E-45 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Pfam PF03144 Elongation factor Tu domain 2 331 398 5.1E-16 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SMART SM00889 487 609 4.0E-71 T 25-04-2017 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Pfam PF00679 Elongation factor G C-terminus 611 696 2.1E-28 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SMART SM00838 611 698 1.1E-49 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 Pfam PF14492 Elongation Factor G, domain II 411 485 7.8E-34 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS22370 dc3d7b37dc7d4ff5317ea246f81f6152 704 SUPERFAMILY SSF54211 486 610 1.31E-39 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS10290 0f80666ce1631902f271750f948d7e43 236 Pfam PF04352 ProQ/FINO family 8 115 4.1E-43 T 25-04-2017 IPR016103 ProQ/FinO domain A4U88_RS10290 0f80666ce1631902f271750f948d7e43 236 SMART SM00945 5 119 3.8E-63 T 25-04-2017 IPR016103 ProQ/FinO domain A4U88_RS10290 0f80666ce1631902f271750f948d7e43 236 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 236 30.654 T 25-04-2017 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 A4U88_RS10290 0f80666ce1631902f271750f948d7e43 236 Gene3D G3DSA:1.10.1710.10 4 118 6.6E-36 T 25-04-2017 IPR016103 ProQ/FinO domain A4U88_RS10290 0f80666ce1631902f271750f948d7e43 236 SUPERFAMILY SSF48657 5 119 3.01E-39 T 25-04-2017 IPR016103 ProQ/FinO domain A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 25-04-2017 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 1.2E-106 T 25-04-2017 A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 SUPERFAMILY SSF56219 1 267 4.71E-90 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 Gene3D G3DSA:3.60.10.10 1 266 3.1E-88 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 2.2E-91 T 25-04-2017 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 197 213 - T 25-04-2017 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 4.1E-30 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS13280 91a3db4e5e00d95ce3c894dcb21fb725 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 25-04-2017 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 A4U88_RS19300 9122e8f0af70a4a813ef7b9c6bae3131 150 SUPERFAMILY SSF52218 1 148 1.54E-40 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS19300 9122e8f0af70a4a813ef7b9c6bae3131 150 Pfam PF00258 Flavodoxin 6 133 3.5E-22 T 25-04-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 A4U88_RS19300 9122e8f0af70a4a813ef7b9c6bae3131 150 PRINTS PR00369 Flavodoxin signature 108 127 1.7E-6 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS19300 9122e8f0af70a4a813ef7b9c6bae3131 150 PRINTS PR00369 Flavodoxin signature 84 94 1.7E-6 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS19300 9122e8f0af70a4a813ef7b9c6bae3131 150 PRINTS PR00369 Flavodoxin signature 53 64 1.7E-6 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS19300 9122e8f0af70a4a813ef7b9c6bae3131 150 Gene3D G3DSA:3.40.50.360 1 148 8.4E-36 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS10560 65c44c76bcb79340aeee03652fbe1ac6 118 SUPERFAMILY SSF103481 39 117 2.48E-13 T 25-04-2017 A4U88_RS10560 65c44c76bcb79340aeee03652fbe1ac6 118 Pfam PF00892 EamA-like transporter family 29 115 3.3E-11 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS10560 65c44c76bcb79340aeee03652fbe1ac6 118 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 6 118 30.805 T 25-04-2017 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:3.30.300.30 865 981 4.7E-44 T 25-04-2017 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Pfam PF00550 Phosphopantetheine attachment site 979 1040 6.1E-10 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 486 893 9.5E-143 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1002 1017 - T 25-04-2017 IPR006162 Phosphopantetheine attachment site A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 ProSitePatterns PS00455 Putative AMP-binding domain signature. 612 623 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 SUPERFAMILY SSF56801 425 990 3.14E-173 T 25-04-2017 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:3.40.50.980 459 621 6.7E-55 T 25-04-2017 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:2.30.38.10 781 860 3.7E-28 T 25-04-2017 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 SUPERFAMILY SSF52777 6 179 1.89E-29 T 25-04-2017 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Pfam PF00668 Condensation domain 4 297 2.5E-50 T 25-04-2017 IPR001242 Condensation domain A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 SUPERFAMILY SSF53474 1086 1300 6.71E-33 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Pfam PF13193 AMP-binding enzyme C-terminal domain 878 952 1.1E-10 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Pfam PF00501 AMP-binding enzyme 465 869 2.8E-107 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Pfam PF00975 Thioesterase domain 1087 1186 6.0E-19 T 25-04-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:1.10.1200.10 982 1044 4.0E-24 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 SUPERFAMILY SSF52777 185 450 3.22E-41 T 25-04-2017 A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 SUPERFAMILY SSF47336 970 1042 2.09E-17 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:3.40.50.1820 1084 1186 5.1E-25 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:3.40.50.1820 1226 1295 5.1E-25 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS21735 16b469d165e229131f2aa7dcbf843c6f 1312 Gene3D G3DSA:3.40.50.980 622 780 2.4E-47 T 25-04-2017 A4U88_RS22335 c2609f44dd1fdf6025b7b89b1c43f8ae 100 Pfam PF00276 Ribosomal protein L23 9 95 1.1E-31 T 25-04-2017 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22335 c2609f44dd1fdf6025b7b89b1c43f8ae 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 25-04-2017 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22335 c2609f44dd1fdf6025b7b89b1c43f8ae 100 SUPERFAMILY SSF54189 6 97 3.53E-31 T 25-04-2017 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22335 c2609f44dd1fdf6025b7b89b1c43f8ae 100 Gene3D G3DSA:3.30.70.330 6 98 6.1E-35 T 25-04-2017 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 A4U88_RS22335 c2609f44dd1fdf6025b7b89b1c43f8ae 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.726 T 25-04-2017 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 A4U88_RS02250 f612251da38de93ccbb2fa0708e0883b 141 Gene3D G3DSA:3.30.70.970 1 124 1.7E-53 T 25-04-2017 IPR009671 Regulator of ribonuclease activity B domain A4U88_RS02250 f612251da38de93ccbb2fa0708e0883b 141 SUPERFAMILY SSF89946 3 122 3.53E-41 T 25-04-2017 IPR009671 Regulator of ribonuclease activity B domain A4U88_RS02250 f612251da38de93ccbb2fa0708e0883b 141 PIRSF PIRSF018193 1 141 1.0E-66 T 25-04-2017 IPR016716 Regulator of ribonuclease activity B A4U88_RS02250 f612251da38de93ccbb2fa0708e0883b 141 Pfam PF06877 Regulator of ribonuclease activity B 12 113 3.4E-33 T 25-04-2017 IPR009671 Regulator of ribonuclease activity B domain A4U88_RS02250 f612251da38de93ccbb2fa0708e0883b 141 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 31.199 T 25-04-2017 IPR016716 Regulator of ribonuclease activity B A4U88_RS12690 3ca5981dcb24d4d97f951c3d8b6b8e95 353 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 2.2E-138 T 25-04-2017 IPR006507 Uncharacterised protein family UPF0283 A4U88_RS12690 3ca5981dcb24d4d97f951c3d8b6b8e95 353 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 38.86 T 25-04-2017 IPR006507 Uncharacterised protein family UPF0283 A4U88_RS12690 3ca5981dcb24d4d97f951c3d8b6b8e95 353 Pfam PF05128 Domain of unknown function (DUF697) 184 342 1.2E-54 T 25-04-2017 IPR021147 Protein of unknown function DUF697 A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 SUPERFAMILY SSF52540 207 278 2.93E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 SUPERFAMILY SSF52540 305 459 2.93E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 Gene3D G3DSA:3.40.50.300 193 467 5.2E-104 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 SUPERFAMILY SSF48024 28 139 9.55E-38 T 25-04-2017 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 Pfam PF00772 DnaB-like helicase N terminal domain 30 131 2.0E-35 T 25-04-2017 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 Pfam PF03796 DnaB-like helicase C terminal domain 209 465 2.0E-113 T 25-04-2017 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 Gene3D G3DSA:1.10.860.10 30 132 6.0E-40 T 25-04-2017 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 29 467 4.1E-174 T 25-04-2017 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 A4U88_RS21855 e894338aa90de25a4a16b408727ec67f 474 SMART SM00382 226 432 2.1E-4 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08140 57b01d72731c6fc5a91b0f46d33ab298 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 232 2.5E-28 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS08140 57b01d72731c6fc5a91b0f46d33ab298 336 SUPERFAMILY SSF51735 1 268 1.84E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08140 57b01d72731c6fc5a91b0f46d33ab298 336 SUPERFAMILY SSF51735 296 332 1.84E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08140 57b01d72731c6fc5a91b0f46d33ab298 336 Gene3D G3DSA:3.90.25.10 237 330 5.2E-8 T 25-04-2017 A4U88_RS08140 57b01d72731c6fc5a91b0f46d33ab298 336 Gene3D G3DSA:3.40.50.720 1 236 1.9E-46 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 SUPERFAMILY SSF53850 94 301 6.52E-48 T 25-04-2017 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 Pfam PF03466 LysR substrate binding domain 92 297 5.1E-48 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 Gene3D G3DSA:3.40.190.10 181 263 3.8E-7 T 25-04-2017 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 SUPERFAMILY SSF46785 9 116 1.25E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 Gene3D G3DSA:3.40.190.10 96 180 3.6E-26 T 25-04-2017 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 8.3E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 8.6E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 8.6E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 8.6E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02170 af6a10591e8a9c8fd7b3b25912f3cb64 304 Gene3D G3DSA:1.10.10.10 9 84 3.9E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08205 1571f56fb8f7c941ba4632b215ba38f2 106 Gene3D G3DSA:3.30.1390.10 4 106 6.9E-44 T 25-04-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like A4U88_RS08205 1571f56fb8f7c941ba4632b215ba38f2 106 SUPERFAMILY SSF54736 22 105 5.02E-33 T 25-04-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like A4U88_RS08205 1571f56fb8f7c941ba4632b215ba38f2 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 14 101 28.159 T 25-04-2017 IPR022935 ATP-dependent Clp protease adaptor protein ClpS A4U88_RS08205 1571f56fb8f7c941ba4632b215ba38f2 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 2.5E-33 T 25-04-2017 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 SUPERFAMILY SSF53383 6 416 8.66E-183 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 PIRSF PIRSF000412 1 416 1.9E-174 T 25-04-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 Gene3D G3DSA:3.40.640.10 37 285 7.7E-111 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 25-04-2017 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 Gene3D G3DSA:3.90.1150.10 286 416 6.0E-54 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 3.7E-189 T 25-04-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 A4U88_RS18490 f9dd1f3efcefa0351ce75931232b2d78 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.768 T 25-04-2017 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 SUPERFAMILY SSF47384 217 291 1.18E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 SMART SM00388 233 293 7.8E-12 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 438 5.0E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 Gene3D G3DSA:1.10.287.130 223 288 7.0E-19 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 Gene3D G3DSA:3.30.565.10 294 444 5.0E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 SMART SM00387 332 440 5.9E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 SMART SM00304 180 232 5.3E-6 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 Pfam PF00672 HAMP domain 162 226 1.2E-12 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 3.1E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 3.1E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 3.1E-10 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 5.8E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS22725 1b4d3af7c9f0eed459a1e611925f66ea 456 SUPERFAMILY SSF55874 292 440 1.7E-30 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14200 13f73fb0021d1aa4b4762153f8938cf3 231 Pfam PF04752 ChaC-like protein 47 215 3.2E-50 T 25-04-2017 IPR006840 ChaC-like protein Reactome: R-HSA-174403 A4U88_RS14200 13f73fb0021d1aa4b4762153f8938cf3 231 Gene3D G3DSA:3.10.490.10 41 208 1.6E-44 T 25-04-2017 IPR013024 Butirosin biosynthesis, BtrG-like A4U88_RS14200 13f73fb0021d1aa4b4762153f8938cf3 231 SUPERFAMILY SSF110857 47 160 3.79E-11 T 25-04-2017 IPR013024 Butirosin biosynthesis, BtrG-like A4U88_RS18325 46ecf42a34fdbde8db08579cc33ac691 458 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 8.2E-33 T 25-04-2017 IPR025824 OB-fold nucleic acid binding domain GO:0003676 A4U88_RS18325 46ecf42a34fdbde8db08579cc33ac691 458 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 358 7.9E-139 T 25-04-2017 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS18325 46ecf42a34fdbde8db08579cc33ac691 458 Pfam PF02601 Exonuclease VII, large subunit 126 440 1.0E-101 T 25-04-2017 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 A4U88_RS18325 46ecf42a34fdbde8db08579cc33ac691 458 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.547 T 25-04-2017 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 ProSitePatterns PS00850 Glycine radical domain signature. 781 789 - T 25-04-2017 IPR019777 Formate C-acetyltransferase glycine radical, conserved site A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 PIRSF PIRSF000379 44 810 1.1E-179 T 25-04-2017 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 SUPERFAMILY SSF51998 5 809 4.58E-222 T 25-04-2017 A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 Gene3D G3DSA:3.20.70.20 9 809 1.7E-257 T 25-04-2017 A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 Pfam PF02901 Pyruvate formate lyase-like 11 671 3.0E-206 T 25-04-2017 IPR004184 Pyruvate formate lyase domain GO:0003824 A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 Pfam PF01228 Glycine radical 688 791 3.1E-28 T 25-04-2017 IPR001150 Glycine radical domain GO:0003824|GO:0008152 A4U88_RS12835 327af64c12adb4afa118823dffdcf4a0 810 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 9 810 0.0 T 25-04-2017 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 A4U88_RS24055 365d7544a1c41d73c0834baf5266f2d0 622 TIGRFAM TIGR00794 kup: potassium uptake protein 97 550 1.1E-184 T 25-04-2017 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 A4U88_RS24055 365d7544a1c41d73c0834baf5266f2d0 622 Pfam PF02705 K+ potassium transporter 14 544 5.1E-207 T 25-04-2017 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 A4U88_RS24055 365d7544a1c41d73c0834baf5266f2d0 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.591 T 25-04-2017 IPR023051 Potassium uptake protein, low affinity, Kup A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 1.3E-31 T 25-04-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.3E-31 T 25-04-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 1.3E-31 T 25-04-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 1.3E-31 T 25-04-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 Pfam PF00579 tRNA synthetases class I (W and Y) 31 328 9.6E-89 T 25-04-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 SMART SM00363 357 419 1.1E-5 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 SUPERFAMILY SSF55174 327 423 4.71E-20 T 25-04-2017 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 SUPERFAMILY SSF52374 4 328 7.36E-107 T 25-04-2017 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 423 45.654 T 25-04-2017 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 Gene3D G3DSA:3.10.290.10 322 423 5.4E-29 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 Pfam PF01479 S4 domain 359 403 1.3E-6 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 423 3.4E-141 T 25-04-2017 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 Gene3D G3DSA:3.40.50.620 4 237 6.1E-104 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS10885 8fe4244ca398485375936fc78cd44b5d 424 Gene3D G3DSA:1.10.240.10 238 321 1.5E-41 T 25-04-2017 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 3.9E-19 T 25-04-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 SUPERFAMILY SSF53738 258 365 4.32E-30 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Gene3D G3DSA:3.40.120.10 176 250 7.1E-27 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 444 47.833 T 25-04-2017 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 4.2E-16 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 25-04-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 442 4.3E-197 T 25-04-2017 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Gene3D G3DSA:3.40.120.10 251 367 4.9E-31 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 SUPERFAMILY SSF55957 357 444 3.14E-23 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 SUPERFAMILY SSF53738 156 256 1.37E-29 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 1.5E-30 T 25-04-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 6.8E-45 T 25-04-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.1E-13 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.1E-13 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.1E-13 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Gene3D G3DSA:3.30.310.50 369 443 2.6E-18 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 Gene3D G3DSA:3.40.120.10 4 150 1.0E-46 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS01935 cf2ac69897a1d073d18eb840cf4f1390 445 SUPERFAMILY SSF53738 3 181 2.47E-49 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS10420 b6a9a8dbb33a7dbc150180452e33ec47 286 Gene3D G3DSA:1.10.3470.10 25 236 4.3E-9 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10420 b6a9a8dbb33a7dbc150180452e33ec47 286 SUPERFAMILY SSF81345 3 261 1.7E-38 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10420 b6a9a8dbb33a7dbc150180452e33ec47 286 Pfam PF00950 ABC 3 transport family 10 265 3.6E-88 T 25-04-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 SMART SM00382 375 560 1.7E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 Pfam PF00664 ABC transporter transmembrane region 26 291 1.2E-42 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 Pfam PF00005 ABC transporter 369 513 1.7E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 Gene3D G3DSA:1.20.1560.10 20 329 6.8E-44 T 25-04-2017 A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 Gene3D G3DSA:3.40.50.300 366 579 5.4E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 SUPERFAMILY SSF90123 11 331 3.27E-54 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 SUPERFAMILY SSF52540 362 582 4.28E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 9.8E-196 T 25-04-2017 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 A4U88_RS08230 d19a56ed65a7ae27cf5387e9c8fb62ba 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS03095 9cb114addc3ff159a3dc92cbcb3cc7e9 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 1.7E-98 T 25-04-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 A4U88_RS03095 9cb114addc3ff159a3dc92cbcb3cc7e9 317 Pfam PF02401 LytB protein 3 283 2.5E-92 T 25-04-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 A4U88_RS03095 9cb114addc3ff159a3dc92cbcb3cc7e9 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 37.072 T 25-04-2017 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Gene3D G3DSA:1.20.150.20 383 510 6.8E-50 T 25-04-2017 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Gene3D G3DSA:2.40.30.20 1 93 8.0E-30 T 25-04-2017 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 SUPERFAMILY SSF50615 10 94 9.22E-26 T 25-04-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 PIRSF PIRSF039088 1 513 5.0E-232 T 25-04-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 SUPERFAMILY SSF52540 96 381 4.83E-95 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.9E-13 T 25-04-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.379 T 25-04-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 25-04-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Gene3D G3DSA:3.40.50.300 94 382 3.3E-114 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 4.7E-46 T 25-04-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 2.6E-262 T 25-04-2017 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.4E-73 T 25-04-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24120 19bfd6f9d3a564aa07e4bcb543855d14 513 SUPERFAMILY SSF47917 383 511 4.97E-47 T 25-04-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS23540 0a45bc031e6fd00ba6ec67b5d696c45c 311 SUPERFAMILY SSF110997 236 306 7.32E-21 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS23540 0a45bc031e6fd00ba6ec67b5d696c45c 311 Gene3D G3DSA:3.30.70.1070 233 306 1.2E-29 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS23540 0a45bc031e6fd00ba6ec67b5d696c45c 311 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 305 1.5E-76 T 25-04-2017 IPR011930 Cell division protein FtsN GO:0005515 A4U88_RS23540 0a45bc031e6fd00ba6ec67b5d696c45c 311 Pfam PF05036 Sporulation related domain 237 304 1.6E-18 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS23540 0a45bc031e6fd00ba6ec67b5d696c45c 311 Hamap MF_02039 Cell division protein FtsN [ftsN]. 34 311 37.295 T 25-04-2017 IPR011930 Cell division protein FtsN GO:0005515 A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 Gene3D G3DSA:1.10.10.10 9 92 1.4E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 SUPERFAMILY SSF53850 97 294 1.18E-34 T 25-04-2017 A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 Pfam PF03466 LysR substrate binding domain 96 293 4.5E-31 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 Gene3D G3DSA:3.40.190.10 178 264 1.0E-13 T 25-04-2017 A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 2.6E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 Gene3D G3DSA:3.40.190.10 97 177 5.0E-26 T 25-04-2017 A4U88_RS15900 8a5af19f94c57602b89bf4bc39042c16 296 SUPERFAMILY SSF46785 7 115 2.33E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 Gene3D G3DSA:3.40.190.10 179 261 1.0E-24 T 25-04-2017 A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 Pfam PF03466 LysR substrate binding domain 90 294 9.7E-42 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 Gene3D G3DSA:1.10.10.10 5 84 2.3E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 3.0E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 SUPERFAMILY SSF53850 91 296 1.36E-44 T 25-04-2017 A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 SUPERFAMILY SSF46785 5 89 1.32E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02780 759b0e4ebe560912f11f888ecfe9e5c7 303 Gene3D G3DSA:3.40.190.10 94 178 1.8E-22 T 25-04-2017 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Gene3D G3DSA:3.40.50.720 1 90 4.6E-40 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 59.316 T 25-04-2017 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Gene3D G3DSA:3.90.190.20 313 450 4.1E-36 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 SUPERFAMILY SSF53623 96 308 2.75E-48 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Gene3D G3DSA:3.40.1190.10 92 312 4.4E-83 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Pfam PF01225 Mur ligase family, catalytic domain 2 100 4.6E-19 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 364 2.3E-9 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 SUPERFAMILY SSF51984 1 90 2.09E-24 T 25-04-2017 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 Pfam PF08245 Mur ligase middle domain 108 290 1.7E-18 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 SUPERFAMILY SSF53244 312 449 9.68E-37 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS01835 3ee005ae1a032e2226c5668008b6f21d 459 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 2.8E-264 T 25-04-2017 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 SUPERFAMILY SSF53062 1 129 1.83E-32 T 25-04-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 SUPERFAMILY SSF52009 361 474 4.19E-25 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Pfam PF03610 PTS system fructose IIA component 4 120 1.4E-25 T 25-04-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Pfam PF00391 PEP-utilising enzyme, mobile domain 398 470 8.4E-17 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Gene3D G3DSA:1.10.274.10 274 379 1.3E-32 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 PRINTS PR00107 Phosphocarrier protein signature 189 204 3.2E-8 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 PRINTS PR00107 Phosphocarrier protein signature 164 180 3.2E-8 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 PRINTS PR00107 Phosphocarrier protein signature 204 221 3.2E-8 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 154 231 2.6E-17 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Gene3D G3DSA:3.30.1340.10 154 238 7.0E-27 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Gene3D G3DSA:3.50.30.10 380 473 5.7E-25 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Pfam PF00381 PTS HPr component phosphorylation site 154 233 1.8E-20 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 SUPERFAMILY SSF55594 154 238 1.3E-21 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Pfam PF05524 PEP-utilising enzyme, N-terminal 249 372 4.9E-28 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 164 171 - T 25-04-2017 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 SUPERFAMILY SSF47831 275 389 1.7E-29 T 25-04-2017 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 Gene3D G3DSA:3.40.50.510 1 132 6.1E-47 T 25-04-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 A4U88_RS20920 72c516db679172220117b7e7b754a8ef 476 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 126 4.3E-38 T 25-04-2017 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 SUPERFAMILY SSF50129 4 188 8.78E-43 T 25-04-2017 IPR011032 GroES-like A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 SMART SM00829 15 353 0.0049 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 71 85 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 146 1.2E-24 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 Pfam PF00107 Zinc-binding dehydrogenase 189 306 1.1E-23 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 Gene3D G3DSA:3.40.50.720 182 301 5.8E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 Gene3D G3DSA:3.90.180.10 2 181 3.4E-46 T 25-04-2017 IPR011032 GroES-like A4U88_RS16190 67b2c79de1db94fe5231a8344c1fe4d6 355 SUPERFAMILY SSF51735 156 311 1.97E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11485 59b50d480a7d2b5540809b0042c87c37 298 Gene3D G3DSA:3.10.310.10 11 138 4.1E-43 T 25-04-2017 A4U88_RS11485 59b50d480a7d2b5540809b0042c87c37 298 SUPERFAMILY SSF54506 11 296 1.02E-68 T 25-04-2017 A4U88_RS11485 59b50d480a7d2b5540809b0042c87c37 298 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 12 276 6.0E-60 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS11485 59b50d480a7d2b5540809b0042c87c37 298 PIRSF PIRSF016184 8 298 1.2E-72 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS11485 59b50d480a7d2b5540809b0042c87c37 298 Gene3D G3DSA:3.10.310.10 139 287 1.4E-34 T 25-04-2017 A4U88_RS11485 59b50d480a7d2b5540809b0042c87c37 298 Pfam PF02567 Phenazine biosynthesis-like protein 15 276 4.0E-58 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 SUPERFAMILY SSF48600 5 91 1.83E-21 T 25-04-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 Gene3D G3DSA:3.40.190.10 192 272 6.3E-29 T 25-04-2017 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 SMART SM00830 10 90 2.6E-23 T 25-04-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 260 282 - T 25-04-2017 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 6 88 1.2E-33 T 25-04-2017 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 SUPERFAMILY SSF53850 104 290 5.1E-57 T 25-04-2017 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 PIRSF PIRSF001500 1 379 1.9E-139 T 25-04-2017 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 Gene3D G3DSA:1.20.59.10 2 104 4.0E-42 T 25-04-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 Gene3D G3DSA:3.40.190.10 105 191 3.1E-32 T 25-04-2017 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 324 331 - T 25-04-2017 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 Pfam PF01817 Chorismate mutase type II 10 88 1.1E-15 T 25-04-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 SUPERFAMILY SSF55021 279 376 1.28E-22 T 25-04-2017 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 Gene3D G3DSA:3.30.70.260 292 377 2.3E-26 T 25-04-2017 A4U88_RS03880 0f8a5eb0d3e9c6fdfc86a0901402ad74 385 Pfam PF00800 Prephenate dehydratase 105 285 1.3E-61 T 25-04-2017 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 Pfam PF00571 CBS domain 201 258 6.8E-6 T 25-04-2017 IPR000644 CBS domain A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 Pfam PF00571 CBS domain 278 317 0.0044 T 25-04-2017 IPR000644 CBS domain A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 PIRSF PIRSF004692 1 323 5.2E-118 T 25-04-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 Pfam PF01380 SIS domain 41 171 7.6E-33 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 Gene3D G3DSA:3.40.50.10490 11 191 2.4E-45 T 25-04-2017 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 SUPERFAMILY SSF54631 267 320 8.83E-6 T 25-04-2017 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 SUPERFAMILY SSF53697 11 258 1.05E-57 T 25-04-2017 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 SMART SM00116 210 258 0.87 T 25-04-2017 IPR000644 CBS domain A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 SMART SM00116 274 322 8.2 T 25-04-2017 IPR000644 CBS domain A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 313 4.2E-114 T 25-04-2017 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 A4U88_RS18205 507292fc73e90688c8bc0605e23a3589 323 Gene3D G3DSA:3.10.580.10 192 319 3.6E-29 T 25-04-2017 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 180 322 6.9E-33 T 25-04-2017 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 SMART SM00997 166 324 1.8E-59 T 25-04-2017 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 SUPERFAMILY SSF52283 8 165 4.42E-24 T 25-04-2017 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 SUPERFAMILY SSF52283 325 360 4.42E-24 T 25-04-2017 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 Gene3D G3DSA:3.40.50.720 202 282 5.6E-10 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 Gene3D G3DSA:3.40.50.1480 7 201 3.9E-44 T 25-04-2017 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 SUPERFAMILY SSF51735 166 324 3.61E-42 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 SMART SM00996 4 364 7.1E-10 T 25-04-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 A4U88_RS06475 bae422beb063224d7f238da5bf9f82c6 367 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 14 123 4.4E-11 T 25-04-2017 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 Gene3D G3DSA:1.10.10.60 226 270 2.3E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 SMART SM00342 187 269 1.3E-26 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 Pfam PF02311 AraC-like ligand binding domain 21 146 5.6E-18 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 224 265 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 SUPERFAMILY SSF46689 223 270 1.7E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 SUPERFAMILY SSF46689 170 221 1.09E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 Gene3D G3DSA:1.10.10.60 167 225 1.2E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 Gene3D G3DSA:2.60.120.280 30 116 2.2E-11 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 Pfam PF12833 Helix-turn-helix domain 193 270 1.2E-21 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 172 216 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS06695 9ff7ab6afcb13063cb641196cc557725 275 SUPERFAMILY SSF51215 28 152 1.44E-18 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS19885 c00b7c5dd3198e17e059ec40907510b4 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 3.7E-25 T 25-04-2017 IPR005631 Flavinator of succinate dehydrogenase A4U88_RS19885 c00b7c5dd3198e17e059ec40907510b4 88 Gene3D G3DSA:1.10.150.250 2 85 3.9E-31 T 25-04-2017 IPR005631 Flavinator of succinate dehydrogenase A4U88_RS19885 c00b7c5dd3198e17e059ec40907510b4 88 SUPERFAMILY SSF109910 1 78 8.5E-27 T 25-04-2017 IPR005631 Flavinator of succinate dehydrogenase A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Gene3D G3DSA:3.40.50.300 202 378 8.3E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 SMART SM00382 226 370 9.8E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 25-04-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 513 1.1E-27 T 25-04-2017 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Gene3D G3DSA:3.30.450.20 76 178 1.4E-14 T 25-04-2017 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Gene3D G3DSA:1.10.10.60 458 513 4.2E-27 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 SUPERFAMILY SSF46689 459 513 7.62E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 25-04-2017 IPR025944 Sigma-54 interaction domain, conserved site A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Pfam PF00989 PAS fold 82 167 1.3E-6 T 25-04-2017 IPR013767 PAS fold GO:0006355 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Pfam PF00158 Sigma-54 interaction domain 207 372 1.1E-62 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 SUPERFAMILY SSF55021 2 69 2.6E-5 T 25-04-2017 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 SMART SM00091 80 146 5.6E-8 T 25-04-2017 IPR000014 PAS domain A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 SUPERFAMILY SSF55785 77 175 2.97E-9 T 25-04-2017 IPR000014 PAS domain A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 25-04-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 SUPERFAMILY SSF52540 206 447 1.44E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Gene3D G3DSA:1.10.8.60 379 448 5.8E-19 T 25-04-2017 A4U88_RS12685 ba708757305f2a9a74c3f39f98a534a7 523 Gene3D G3DSA:3.30.70.260 2 68 1.9E-5 T 25-04-2017 A4U88_RS22340 68a836c4bdd440254b202ac6f989a91c 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 4.5E-64 T 25-04-2017 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 A4U88_RS22340 68a836c4bdd440254b202ac6f989a91c 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 1.6E-74 T 25-04-2017 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22340 68a836c4bdd440254b202ac6f989a91c 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 33.902 T 25-04-2017 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22340 68a836c4bdd440254b202ac6f989a91c 201 SUPERFAMILY SSF52166 10 200 1.24E-72 T 25-04-2017 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 A4U88_RS22340 68a836c4bdd440254b202ac6f989a91c 201 Gene3D G3DSA:3.40.1370.10 54 201 4.2E-59 T 25-04-2017 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 249 270 - T 25-04-2017 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 Gene3D G3DSA:3.10.180.10 15 143 1.8E-37 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 Gene3D G3DSA:3.10.180.10 155 292 7.9E-40 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 SUPERFAMILY SSF54593 14 328 3.53E-44 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 22 109 2.1E-6 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 155 271 1.8E-11 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS02690 a9c6ef35ca965414384807829c5eeaeb 360 TIGRFAM TIGR02295 HpaD: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 17 312 3.2E-128 T 25-04-2017 IPR011981 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Gene3D G3DSA:2.30.42.10 252 335 3.2E-22 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 534 667 3.9E-42 T 25-04-2017 IPR020992 Tail specific protease, C-terminal A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 SUPERFAMILY SSF50156 216 343 6.37E-17 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Gene3D G3DSA:3.90.226.10 336 533 1.4E-64 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Gene3D G3DSA:3.90.226.10 646 676 1.4E-64 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 194 551 1.2E-123 T 25-04-2017 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 SMART SM00228 246 323 9.5E-10 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Pfam PF03572 Peptidase family S41 356 528 3.9E-51 T 25-04-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Gene3D G3DSA:3.30.750.44 195 251 2.5E-4 T 25-04-2017 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 SUPERFAMILY SSF52096 175 264 1.44E-67 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 SUPERFAMILY SSF52096 350 535 1.44E-67 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 SMART SM00245 326 531 2.5E-74 T 25-04-2017 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 A4U88_RS10295 4f5d867391668f4badadb3fd016e2688 682 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 240 320 1.7E-14 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS17835 7b17a3ec375e09d6b8a2168c0e77dce7 159 Pfam PF12688 Tetratrico peptide repeat 37 155 8.7E-15 T 25-04-2017 A4U88_RS17835 7b17a3ec375e09d6b8a2168c0e77dce7 159 Gene3D G3DSA:1.25.40.10 10 151 9.8E-17 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS17835 7b17a3ec375e09d6b8a2168c0e77dce7 159 SMART SM00028 34 67 21.0 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS17835 7b17a3ec375e09d6b8a2168c0e77dce7 159 SMART SM00028 71 104 2.3 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS17835 7b17a3ec375e09d6b8a2168c0e77dce7 159 SMART SM00028 105 138 450.0 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS17835 7b17a3ec375e09d6b8a2168c0e77dce7 159 SUPERFAMILY SSF48452 11 152 2.06E-15 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 1.7E-22 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 SUPERFAMILY SSF52172 3 126 1.15E-41 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 Gene3D G3DSA:3.40.50.2300 4 127 1.7E-42 T 25-04-2017 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 SMART SM00448 5 116 1.2E-44 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 SMART SM00862 156 232 1.7E-23 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 SUPERFAMILY SSF46894 132 234 2.07E-26 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS22730 8d74fe995ca49599e0d24df6a5a0e460 239 Gene3D G3DSA:1.10.10.10 132 235 1.3E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05885 50159397ae26b3793b9220af4e305fd5 69 Pfam PF10725 Protein of unknown function (DUF2517) 5 64 2.5E-36 T 25-04-2017 IPR019663 Uncharacterised protein YbfA A4U88_RS23765 9f2ada30c5d799e4a8e81a9aa27a4ca6 337 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 82 325 3.9E-23 T 25-04-2017 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 A4U88_RS23765 9f2ada30c5d799e4a8e81a9aa27a4ca6 337 Gene3D G3DSA:3.40.50.2000 170 336 5.5E-33 T 25-04-2017 A4U88_RS23765 9f2ada30c5d799e4a8e81a9aa27a4ca6 337 Gene3D G3DSA:3.40.50.2000 2 149 3.2E-21 T 25-04-2017 A4U88_RS23765 9f2ada30c5d799e4a8e81a9aa27a4ca6 337 SUPERFAMILY SSF53756 2 335 3.77E-61 T 25-04-2017 A4U88_RS22385 7c069665215f2919ac92df75f0b666a2 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 27.569 T 25-04-2017 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 A4U88_RS22385 7c069665215f2919ac92df75f0b666a2 95 Gene3D G3DSA:3.40.1260.10 1 94 4.0E-31 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS22385 7c069665215f2919ac92df75f0b666a2 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 1.7E-29 T 25-04-2017 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 A4U88_RS22385 7c069665215f2919ac92df75f0b666a2 95 Pfam PF04077 DsrH like protein 7 91 1.8E-27 T 25-04-2017 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 A4U88_RS22385 7c069665215f2919ac92df75f0b666a2 95 SUPERFAMILY SSF75169 1 95 7.21E-29 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS16695 26cfc9d6cf1f29451a1f9a9333647988 86 SUPERFAMILY SSF54292 4 85 6.82E-19 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS16695 26cfc9d6cf1f29451a1f9a9333647988 86 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 78 1.7E-9 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS16695 26cfc9d6cf1f29451a1f9a9333647988 86 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS16695 26cfc9d6cf1f29451a1f9a9333647988 86 Gene3D G3DSA:3.10.20.30 3 85 1.4E-18 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 SUPERFAMILY SSF55681 5 318 7.37E-105 T 25-04-2017 A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 Gene3D G3DSA:3.30.930.10 4 185 3.3E-99 T 25-04-2017 A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 Gene3D G3DSA:3.30.930.10 221 320 3.3E-99 T 25-04-2017 A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 Pfam PF13393 Histidyl-tRNA synthetase 10 312 1.2E-47 T 25-04-2017 A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 Gene3D G3DSA:3.40.50.800 328 420 4.8E-30 T 25-04-2017 IPR004154 Anticodon-binding A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 Pfam PF03129 Anticodon binding domain 330 419 3.8E-10 T 25-04-2017 IPR004154 Anticodon-binding A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 421 33.459 T 25-04-2017 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 PIRSF PIRSF001549 2 421 6.4E-127 T 25-04-2017 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 SUPERFAMILY SSF52954 327 420 1.51E-23 T 25-04-2017 IPR004154 Anticodon-binding A4U88_RS18380 d2c78f0dfcbefe49880fa83c87267fc6 424 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 411 2.2E-156 T 25-04-2017 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 A4U88_RS10425 c3b81495ad8d493b08bd62c2a4c9fa17 296 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS10425 c3b81495ad8d493b08bd62c2a4c9fa17 296 SMART SM00382 36 224 1.9E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS10425 c3b81495ad8d493b08bd62c2a4c9fa17 296 SUPERFAMILY SSF52540 6 234 4.2E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10425 c3b81495ad8d493b08bd62c2a4c9fa17 296 Gene3D G3DSA:3.40.50.300 8 240 4.2E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10425 c3b81495ad8d493b08bd62c2a4c9fa17 296 Pfam PF00005 ABC transporter 28 174 4.4E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 Gene3D G3DSA:3.40.190.10 96 150 5.0E-6 T 25-04-2017 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 Gene3D G3DSA:1.10.10.10 8 91 1.1E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 SUPERFAMILY SSF46785 11 92 1.74E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 Pfam PF03466 LysR substrate binding domain 96 301 1.8E-40 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 1.6E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 1.6E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 1.6E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 SUPERFAMILY SSF53850 98 301 5.79E-42 T 25-04-2017 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 Gene3D G3DSA:3.40.190.10 170 269 1.2E-18 T 25-04-2017 A4U88_RS10190 b97f3472f0a7f6801e1e9aa9dc61cc93 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 71 7.4E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 Gene3D G3DSA:3.40.640.10 45 315 6.7E-106 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 8.1E-40 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 8.1E-40 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 8.1E-40 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 8.1E-40 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 Pfam PF00155 Aminotransferase class I and II 27 392 1.6E-91 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 25-04-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 A4U88_RS08425 57a98bc82a2927eb87e80ee3da67e5df 396 SUPERFAMILY SSF53383 1 396 2.1E-119 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS00590 6115c24e1d03a156557c1e000a560854 361 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 361 68.086 T 25-04-2017 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 A4U88_RS00590 6115c24e1d03a156557c1e000a560854 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 357 1.1E-183 T 25-04-2017 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 A4U88_RS15960 79739f78f8226366508d70e5447a2772 141 Pfam PF07681 DoxX 25 99 1.5E-12 T 25-04-2017 IPR032808 DoxX family A4U88_RS09440 c14dbbaa291b77a43909a484d7b2792d 293 Pfam PF05425 Copper resistance protein D 188 286 3.3E-18 T 25-04-2017 IPR008457 Copper resistance protein D GO:0016021 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 SUPERFAMILY SSF68923 8 226 3.84E-89 T 25-04-2017 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 1.6E-275 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 PIRSF PIRSF006294 2 539 3.6E-228 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 15 537 55.081 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 489 3.4E-210 T 25-04-2017 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 25-04-2017 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 Gene3D G3DSA:3.40.449.10 21 226 5.3E-87 T 25-04-2017 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 Gene3D G3DSA:3.90.228.20 350 538 2.6E-120 T 25-04-2017 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 Gene3D G3DSA:3.90.228.20 227 289 2.6E-120 T 25-04-2017 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 A4U88_RS10200 587f7a83bfe08e5858a2b547759e979c 539 SUPERFAMILY SSF53795 228 539 1.63E-126 T 25-04-2017 A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 3.5E-63 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 SUPERFAMILY SSF53850 1 257 9.31E-68 T 25-04-2017 A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 Gene3D G3DSA:3.40.190.10 215 257 1.0E-43 T 25-04-2017 A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 Gene3D G3DSA:3.40.190.10 27 113 1.0E-43 T 25-04-2017 A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 253 1.9E-94 T 25-04-2017 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 SMART SM00062 27 256 1.8E-78 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS16990 2915922895a9ed5b2a4e2630e8aad816 260 Gene3D G3DSA:3.40.190.10 115 212 1.6E-31 T 25-04-2017 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 1.8E-97 T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 3.0E-92 T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 SUPERFAMILY SSF51366 3 218 9.42E-76 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 PIRSF PIRSF001461 1 225 2.2E-106 T 25-04-2017 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 Gene3D G3DSA:3.20.20.70 1 221 1.0E-93 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS22630 2cff12bcbd0458e3614e7e901a47b428 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 25-04-2017 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS04705 937963e7fde943d2e4c4dcba8b699d74 77 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 6 43 3.5E-8 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS04705 937963e7fde943d2e4c4dcba8b699d74 77 SUPERFAMILY SSF143120 5 44 3.27E-9 T 25-04-2017 A4U88_RS04705 937963e7fde943d2e4c4dcba8b699d74 77 Gene3D G3DSA:3.40.1620.10 6 42 3.8E-8 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS04705 937963e7fde943d2e4c4dcba8b699d74 77 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 7 41 1.1E-5 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SUPERFAMILY SSF54106 487 531 3.92E-9 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Gene3D G3DSA:3.10.350.10 552 597 4.3E-14 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Pfam PF11741 AMIN domain 35 123 2.9E-6 T 25-04-2017 IPR021731 AMIN domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SMART SM00257 488 531 4.3E-13 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SMART SM00257 553 596 4.4E-12 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SMART SM00646 275 434 9.2E-71 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 215 434 1.7E-47 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Gene3D G3DSA:3.40.630.40 362 437 4.9E-58 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Gene3D G3DSA:3.40.630.40 213 310 4.9E-58 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SUPERFAMILY SSF54106 553 596 3.4E-9 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SUPERFAMILY SSF53187 361 437 2.1E-52 T 25-04-2017 A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 SUPERFAMILY SSF53187 213 309 2.1E-52 T 25-04-2017 A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Gene3D G3DSA:3.10.350.10 487 531 6.8E-14 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Pfam PF01476 LysM domain 554 596 5.0E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS01645 336e2c69e7814f2fac6ba29af56c84c8 598 Pfam PF01476 LysM domain 489 531 5.7E-11 T 25-04-2017 IPR018392 LysM domain A4U88_RS21890 89c3e50ceb14122b2d57c209db3a0fd0 170 Gene3D G3DSA:1.10.10.10 12 83 8.3E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21890 89c3e50ceb14122b2d57c209db3a0fd0 170 Pfam PF01475 Ferric uptake regulator family 20 138 9.6E-16 T 25-04-2017 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 A4U88_RS21890 89c3e50ceb14122b2d57c209db3a0fd0 170 SUPERFAMILY SSF46785 12 144 1.51E-33 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 Gene3D G3DSA:3.40.190.10 90 176 1.6E-19 T 25-04-2017 A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 SUPERFAMILY SSF53850 91 292 4.02E-35 T 25-04-2017 A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 Gene3D G3DSA:3.40.190.10 177 263 7.7E-18 T 25-04-2017 A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.6E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 Gene3D G3DSA:1.10.10.10 3 88 4.5E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 SUPERFAMILY SSF46785 2 113 8.71E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11355 b2dd4babb27ae1c278bab7046bc0b53d 293 Pfam PF03466 LysR substrate binding domain 90 292 3.8E-35 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 SUPERFAMILY SSF49493 254 339 1.09E-21 T 25-04-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Gene3D G3DSA:2.60.260.20 102 135 2.1E-22 T 25-04-2017 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Gene3D G3DSA:2.60.260.20 206 249 2.1E-22 T 25-04-2017 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Pfam PF00226 DnaJ domain 5 66 3.4E-27 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 SMART SM00271 4 61 3.0E-30 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 SUPERFAMILY SSF46565 1 104 5.5E-37 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 PRINTS PR00625 DnaJ domain signature 61 80 2.9E-33 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 PRINTS PR00625 DnaJ domain signature 25 40 2.9E-33 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 PRINTS PR00625 DnaJ domain signature 7 25 2.9E-33 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 PRINTS PR00625 DnaJ domain signature 41 61 2.9E-33 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 25-04-2017 IPR018253 DnaJ domain, conserved site A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Gene3D G3DSA:2.10.230.10 136 205 9.9E-27 T 25-04-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 344 6.9E-144 T 25-04-2017 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Pfam PF00684 DnaJ central domain 142 202 3.1E-16 T 25-04-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Gene3D G3DSA:1.10.287.110 1 101 2.4E-38 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Gene3D G3DSA:2.60.260.20 251 328 1.7E-23 T 25-04-2017 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 SUPERFAMILY SSF57938 129 206 2.22E-24 T 25-04-2017 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Pfam PF01556 DnaJ C terminal domain 116 328 9.5E-46 T 25-04-2017 IPR002939 Chaperone DnaJ, C-terminal A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 368 42.978 T 25-04-2017 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 SUPERFAMILY SSF49493 208 257 2.75E-21 T 25-04-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 A4U88_RS03055 654bd7af1840688e7a692d25d4a0ccac 374 SUPERFAMILY SSF49493 110 164 2.75E-21 T 25-04-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 A4U88_RS16680 2540a5973143f3b53b573feec14efb0f 241 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 2.7E-89 T 25-04-2017 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 A4U88_RS16680 2540a5973143f3b53b573feec14efb0f 241 Pfam PF13489 Methyltransferase domain 57 197 3.8E-25 T 25-04-2017 A4U88_RS16680 2540a5973143f3b53b573feec14efb0f 241 Gene3D G3DSA:3.40.50.150 28 225 1.5E-46 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS16680 2540a5973143f3b53b573feec14efb0f 241 SUPERFAMILY SSF53335 17 229 2.39E-45 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS16680 2540a5973143f3b53b573feec14efb0f 241 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 14 240 37.959 T 25-04-2017 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 SUPERFAMILY SSF53850 90 291 3.98E-44 T 25-04-2017 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 Pfam PF03466 LysR substrate binding domain 90 290 3.1E-44 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 Gene3D G3DSA:3.40.190.10 94 179 3.5E-23 T 25-04-2017 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 Gene3D G3DSA:1.10.10.10 5 90 1.2E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 8.6E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 Gene3D G3DSA:3.40.190.10 180 259 2.4E-15 T 25-04-2017 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 SUPERFAMILY SSF46785 6 90 9.34E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.5E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.5E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02935 432d07dd353fcd276dddc4a82127cb18 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.5E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10035 e67ed84dc2434482233fff487bd12c9e 214 SUPERFAMILY SSF141571 28 212 6.2E-39 T 25-04-2017 A4U88_RS10035 e67ed84dc2434482233fff487bd12c9e 214 Pfam PF00805 Pentapeptide repeats (8 copies) 53 79 1.5E-4 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS10035 e67ed84dc2434482233fff487bd12c9e 214 Pfam PF00805 Pentapeptide repeats (8 copies) 28 45 7.9E-4 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS10035 e67ed84dc2434482233fff487bd12c9e 214 Pfam PF13599 Pentapeptide repeats (9 copies) 94 170 1.2E-15 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS02985 fa6a3f9cc64ef2ea218a4fe4df7eccab 159 Pfam PF05981 CreA protein 24 155 7.4E-58 T 25-04-2017 IPR010292 Uncharacterised protein family CreA A4U88_RS02985 fa6a3f9cc64ef2ea218a4fe4df7eccab 159 PIRSF PIRSF003174 1 159 2.6E-69 T 25-04-2017 IPR010292 Uncharacterised protein family CreA A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 543 0.0 T 25-04-2017 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 SUPERFAMILY SSF53738 209 317 3.41E-9 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 483 539 1.2E-7 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 SUPERFAMILY SSF53738 26 235 3.06E-52 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Gene3D G3DSA:3.30.310.50 466 543 6.5E-29 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 25-04-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 SUPERFAMILY SSF55957 433 543 8.63E-19 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 440 6.0E-29 T 25-04-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 SUPERFAMILY SSF53738 305 446 9.71E-32 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Gene3D G3DSA:3.40.120.10 30 225 9.1E-61 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 4.9E-38 T 25-04-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Gene3D G3DSA:3.40.120.10 311 443 5.0E-35 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Gene3D G3DSA:3.40.120.10 226 310 4.4E-44 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS05840 e0fadfac7a01fc4469a236c65de32bc7 547 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 1.3E-18 T 25-04-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 SUPERFAMILY SSF52540 90 371 6.75E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 SUPERFAMILY SSF50249 48 125 1.88E-29 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 3.7E-22 T 25-04-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 250.745 T 25-04-2017 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Gene3D G3DSA:2.40.50.140 49 117 1.8E-36 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 4.1E-32 T 25-04-2017 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 SUPERFAMILY SSF68912 1 46 3.92E-12 T 25-04-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Gene3D G3DSA:1.10.720.10 1 47 4.3E-22 T 25-04-2017 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 SMART SM00959 5 47 3.1E-17 T 25-04-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 SMART SM00357 52 118 3.3E-18 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 SMART SM00382 170 355 1.0E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Gene3D G3DSA:3.40.50.300 132 418 4.8E-106 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 6.6E-222 T 25-04-2017 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 A4U88_RS00540 af5e758c88b34ac31b21e3eea8d8d6b7 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-16 T 25-04-2017 IPR011112 Rho termination factor, N-terminal GO:0006353 A4U88_RS20405 930767f3e49a09f5da1da35b21c51715 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.913 T 25-04-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 A4U88_RS20405 930767f3e49a09f5da1da35b21c51715 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 9.4E-113 T 25-04-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 A4U88_RS20405 930767f3e49a09f5da1da35b21c51715 284 SUPERFAMILY SSF52374 1 281 9.01E-107 T 25-04-2017 A4U88_RS20405 930767f3e49a09f5da1da35b21c51715 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 6.2E-101 T 25-04-2017 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 A4U88_RS20405 930767f3e49a09f5da1da35b21c51715 284 Gene3D G3DSA:3.40.50.620 1 176 3.9E-76 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS20405 930767f3e49a09f5da1da35b21c51715 284 Gene3D G3DSA:3.30.1300.10 181 282 2.1E-30 T 25-04-2017 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 5.2E-29 T 25-04-2017 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 SUPERFAMILY SSF56276 112 174 7.06E-23 T 25-04-2017 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 SUPERFAMILY SSF56276 43 84 7.06E-23 T 25-04-2017 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 PIRSF PIRSF001356 1 263 2.3E-156 T 25-04-2017 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 Gene3D G3DSA:3.60.90.10 33 186 6.6E-46 T 25-04-2017 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 4.0E-148 T 25-04-2017 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 A4U88_RS20455 4c9435ddfec7b8749e48b05bc5843ffd 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 177.314 T 25-04-2017 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 Gene3D G3DSA:3.30.70.890 168 298 2.8E-41 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 PRINTS PR00958 Homoserine kinase signature 254 269 6.8E-33 T 25-04-2017 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 PRINTS PR00958 Homoserine kinase signature 175 192 6.8E-33 T 25-04-2017 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 PRINTS PR00958 Homoserine kinase signature 137 150 6.8E-33 T 25-04-2017 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 PRINTS PR00958 Homoserine kinase signature 9 24 6.8E-33 T 25-04-2017 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 PRINTS PR00958 Homoserine kinase signature 97 112 6.8E-33 T 25-04-2017 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 Pfam PF08544 GHMP kinases C terminal 212 281 5.4E-10 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 PIRSF PIRSF000676 1 308 6.9E-84 T 25-04-2017 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 Hamap MF_00384 Homoserine kinase [thrB]. 2 307 30.419 T 25-04-2017 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 25-04-2017 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 Pfam PF00288 GHMP kinases N terminal domain 85 150 6.2E-14 T 25-04-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 307 4.6E-113 T 25-04-2017 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 SUPERFAMILY SSF55060 173 289 9.21E-33 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 SUPERFAMILY SSF54211 1 178 2.28E-31 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS03010 751f3b108c2e04c58d54f13d433be0e5 309 Gene3D G3DSA:3.30.230.10 1 163 3.0E-49 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 Gene3D G3DSA:1.20.200.10 198 503 2.9E-129 T 25-04-2017 A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 506 6.4E-224 T 25-04-2017 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 45.267 T 25-04-2017 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 SUPERFAMILY SSF48557 4 506 3.77E-195 T 25-04-2017 IPR008948 L-Aspartase-like GO:0003824 A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 25-04-2017 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 Gene3D G3DSA:1.10.275.10 2 197 6.7E-76 T 25-04-2017 IPR024083 Fumarase/histidase, N-terminal A4U88_RS03560 25304b3de4e937917ee6d0c11fc77eb6 511 Pfam PF00221 Aromatic amino acid lyase 11 471 9.7E-189 T 25-04-2017 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 A4U88_RS05335 36b9d3595beb52de5c3460d815931c5b 87 SUPERFAMILY SSF47336 6 77 5.76E-10 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS05335 36b9d3595beb52de5c3460d815931c5b 87 Gene3D G3DSA:1.10.1200.10 7 78 7.6E-11 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS04310 2579e8ec729c28f11cef267397e5c88f 185 SMART SM00421 123 180 0.0023 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS04310 2579e8ec729c28f11cef267397e5c88f 185 SUPERFAMILY SSF46894 122 174 1.8E-9 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS04310 2579e8ec729c28f11cef267397e5c88f 185 Gene3D G3DSA:1.10.10.10 118 173 1.3E-8 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04310 2579e8ec729c28f11cef267397e5c88f 185 Pfam PF00196 Bacterial regulatory proteins, luxR family 125 175 1.7E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15810 a468d6e39e8b101c622b68b2ffa59705 292 TIGRFAM TIGR00688 rarD: protein RarD 3 254 1.4E-55 T 25-04-2017 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 A4U88_RS15810 a468d6e39e8b101c622b68b2ffa59705 292 SUPERFAMILY SSF103481 36 139 8.63E-8 T 25-04-2017 A4U88_RS15810 a468d6e39e8b101c622b68b2ffa59705 292 Pfam PF00892 EamA-like transporter family 3 139 3.7E-7 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS05160 5db0e63e4487ede02bb63e252a6c4ffe 126 PIRSF PIRSF016789 2 123 1.6E-48 T 25-04-2017 IPR007401 Protein of unknown function DUF454 A4U88_RS05160 5db0e63e4487ede02bb63e252a6c4ffe 126 Pfam PF04304 Protein of unknown function (DUF454) 3 116 8.2E-41 T 25-04-2017 IPR007401 Protein of unknown function DUF454 A4U88_RS21730 135487c118e7cfe0d92d579f0979a0d3 230 SUPERFAMILY SSF52317 3 228 1.78E-40 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS21730 135487c118e7cfe0d92d579f0979a0d3 230 Gene3D G3DSA:3.40.50.880 2 228 4.6E-40 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS21730 135487c118e7cfe0d92d579f0979a0d3 230 Pfam PF00117 Glutamine amidotransferase class-I 30 204 1.3E-12 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 Gene3D G3DSA:2.60.40.1070 141 221 2.1E-28 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 SUPERFAMILY SSF49354 19 138 4.45E-44 T 25-04-2017 IPR008962 PapD-like A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 160 217 5.5E-18 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 SUPERFAMILY SSF49584 140 221 2.09E-24 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 96 113 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 23 138 3.5E-45 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 Gene3D G3DSA:2.60.40.360 23 139 2.9E-47 T 25-04-2017 IPR008962 PapD-like A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 PRINTS PR00969 Pili chaperone signature 155 170 7.9E-38 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 PRINTS PR00969 Pili chaperone signature 69 90 7.9E-38 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 PRINTS PR00969 Pili chaperone signature 120 135 7.9E-38 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 PRINTS PR00969 Pili chaperone signature 24 33 7.9E-38 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS19635 c812c9e02a7040da3281c5ec8a78ed8f 225 PRINTS PR00969 Pili chaperone signature 97 114 7.9E-38 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 SUPERFAMILY SSF50447 795 892 2.75E-34 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 58 96 2.2E-16 T 25-04-2017 IPR013575 Initiation factor 2 associated domain, bacterial A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 892 17.616 T 25-04-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 311 894 4.8E-295 T 25-04-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Pfam PF00009 Elongation factor Tu GTP binding domain 399 555 3.2E-35 T 25-04-2017 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Gene3D G3DSA:3.40.50.300 394 554 2.8E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 319 369 1.5E-14 T 25-04-2017 IPR006847 Translation initiation factor IF-2, N-terminal A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 3 52 2.9E-8 T 25-04-2017 IPR006847 Translation initiation factor IF-2, N-terminal A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Gene3D G3DSA:2.40.30.10 796 892 5.2E-40 T 25-04-2017 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Pfam PF11987 Translation-initiation factor 2 679 784 4.1E-36 T 25-04-2017 IPR023115 Translation initiation factor IF- 2, domain 3 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 SUPERFAMILY SSF52540 394 562 2.19E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 398 553 7.8E-33 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 SUPERFAMILY SSF52156 672 801 1.44E-37 T 25-04-2017 IPR023115 Translation initiation factor IF- 2, domain 3 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 SUPERFAMILY SSF46955 4 51 1.39E-13 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 SUPERFAMILY SSF50447 568 649 7.86E-23 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Gene3D G3DSA:3.40.50.10050 694 773 5.2E-24 T 25-04-2017 IPR023115 Translation initiation factor IF- 2, domain 3 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 ProSitePatterns PS01176 Initiation factor 2 signature. 845 867 - T 25-04-2017 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Gene3D G3DSA:3.30.56.50 3 51 5.3E-25 T 25-04-2017 A4U88_RS01965 aa38fc5c1be80725f98fbefbba1ca3e2 895 Gene3D G3DSA:2.40.30.10 568 658 8.0E-21 T 25-04-2017 A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 SUPERFAMILY SSF52540 286 383 1.33E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 SUPERFAMILY SSF52540 439 612 1.33E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Gene3D G3DSA:3.40.50.300 302 315 2.5E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Gene3D G3DSA:3.40.50.300 359 385 2.5E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Gene3D G3DSA:3.40.50.300 529 599 2.5E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Gene3D G3DSA:3.40.50.300 423 469 2.5E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Gene3D G3DSA:3.40.50.300 158 301 4.0E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Pfam PF13538 UvrD-like helicase C-terminal domain 541 587 3.1E-16 T 25-04-2017 IPR027785 UvrD-like helicase C-terminal domain A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 610 53.58 T 25-04-2017 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 SUPERFAMILY SSF52540 5 365 6.1E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 Pfam PF13604 AAA domain 161 324 3.3E-32 T 25-04-2017 A4U88_RS19415 9f774db15e6a0a2e55bc2b6c974fe6fa 616 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 612 2.1E-190 T 25-04-2017 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 A4U88_RS03110 b74a7344375469d9339d515a90f561e3 287 Gene3D G3DSA:3.60.130.10 10 270 2.3E-53 T 25-04-2017 A4U88_RS03110 b74a7344375469d9339d515a90f561e3 287 SUPERFAMILY SSF51197 13 269 3.62E-59 T 25-04-2017 A4U88_RS03110 b74a7344375469d9339d515a90f561e3 287 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 16 267 1.4E-44 T 25-04-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 Gene3D G3DSA:1.10.10.60 178 235 1.5E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 234 275 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 SMART SM00342 197 279 1.7E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 263 279 1.7E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 263 1.7E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 Pfam PF12833 Helix-turn-helix domain 204 279 4.0E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 Gene3D G3DSA:3.30.450.20 54 170 1.6E-9 T 25-04-2017 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 SUPERFAMILY SSF55785 48 166 1.74E-9 T 25-04-2017 IPR000014 PAS domain A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 Gene3D G3DSA:1.10.10.60 236 279 9.7E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 Pfam PF08448 PAS fold 62 174 2.7E-19 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS08845 8d8fcc2fbce96db1d5a6bc5fc55cbd63 284 SUPERFAMILY SSF46689 233 279 2.82E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS17955 b39169273648c0da30bc17cde44f63fa 489 Gene3D G3DSA:3.30.2010.10 69 151 3.2E-16 T 25-04-2017 A4U88_RS17955 b39169273648c0da30bc17cde44f63fa 489 SUPERFAMILY SSF48452 310 458 3.35E-11 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS17955 b39169273648c0da30bc17cde44f63fa 489 Pfam PF14559 Tetratricopeptide repeat 355 420 1.2E-10 T 25-04-2017 A4U88_RS17955 b39169273648c0da30bc17cde44f63fa 489 Gene3D G3DSA:1.25.40.10 308 460 1.2E-15 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS17955 b39169273648c0da30bc17cde44f63fa 489 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 5 486 40.691 T 25-04-2017 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 A4U88_RS17955 b39169273648c0da30bc17cde44f63fa 489 Pfam PF01435 Peptidase family M48 74 260 2.0E-27 T 25-04-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 A4U88_RS19145 818caade6c80860ac61a7fd3822c80e5 66 Pfam PF06786 Uncharacterised protein family (UPF0253) 2 65 3.3E-36 T 25-04-2017 IPR009624 Uncharacterised protein family UPF0253 A4U88_RS19145 818caade6c80860ac61a7fd3822c80e5 66 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 1 66 1.0E-19 T 25-04-2017 IPR009624 Uncharacterised protein family UPF0253 A4U88_RS19145 818caade6c80860ac61a7fd3822c80e5 66 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 66 26.369 T 25-04-2017 IPR009624 Uncharacterised protein family UPF0253 A4U88_RS09100 0e8ec038419bbd00034bfd8aa524da20 355 SMART SM00450 136 237 3.5E-26 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS09100 0e8ec038419bbd00034bfd8aa524da20 355 SUPERFAMILY SSF52821 123 255 4.32E-30 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS09100 0e8ec038419bbd00034bfd8aa524da20 355 Pfam PF12368 Rhodanase C-terminal 246 308 2.2E-19 T 25-04-2017 IPR022111 Rhodanase, C-terminal A4U88_RS09100 0e8ec038419bbd00034bfd8aa524da20 355 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 39.191 T 25-04-2017 IPR020936 Uncharacterised protein family UPF0176 A4U88_RS09100 0e8ec038419bbd00034bfd8aa524da20 355 Gene3D G3DSA:3.40.250.10 117 242 5.9E-37 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS09100 0e8ec038419bbd00034bfd8aa524da20 355 Pfam PF00581 Rhodanese-like domain 138 233 1.2E-14 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 25-04-2017 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 Pfam PF00166 Chaperonin 10 Kd subunit 3 95 8.0E-30 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 Gene3D G3DSA:2.30.33.40 2 96 2.6E-32 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 3 18 1.2E-27 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 60 72 1.2E-27 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 25 46 1.2E-27 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 PRINTS PR00297 10kDa chaperonin signature 82 95 1.2E-27 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 SMART SM00883 2 95 2.8E-48 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.904 T 25-04-2017 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 A4U88_RS01520 1a92d659a65a8724872333e518caf86d 97 SUPERFAMILY SSF50129 1 96 1.49E-31 T 25-04-2017 IPR011032 GroES-like A4U88_RS02510 1af21f8b991cbfb14e9be4adaf771dd2 378 Gene3D G3DSA:2.40.160.10 43 369 8.3E-40 T 25-04-2017 IPR023614 Porin domain A4U88_RS02510 1af21f8b991cbfb14e9be4adaf771dd2 378 SUPERFAMILY SSF56935 41 366 3.36E-34 T 25-04-2017 A4U88_RS02510 1af21f8b991cbfb14e9be4adaf771dd2 378 Pfam PF13609 Gram-negative porin 14 264 2.6E-17 T 25-04-2017 A4U88_RS20195 a47fd21d3c53ac0dad7eeaf28511f6e5 305 SUPERFAMILY SSF103481 47 147 5.36E-11 T 25-04-2017 A4U88_RS20195 a47fd21d3c53ac0dad7eeaf28511f6e5 305 Pfam PF00892 EamA-like transporter family 21 144 7.2E-13 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS20195 a47fd21d3c53ac0dad7eeaf28511f6e5 305 Pfam PF00892 EamA-like transporter family 159 292 1.5E-7 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS20195 a47fd21d3c53ac0dad7eeaf28511f6e5 305 SUPERFAMILY SSF103481 205 294 6.54E-12 T 25-04-2017 A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF03527 RHS protein 1178 1213 8.9E-14 T 25-04-2017 IPR001826 RHS protein A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF05593 RHS Repeat 553 590 1.3E-6 T 25-04-2017 IPR031325 RHS repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF05593 RHS Repeat 640 675 1.8E-11 T 25-04-2017 IPR031325 RHS repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF05593 RHS Repeat 402 441 2.1E-5 T 25-04-2017 IPR031325 RHS repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF05593 RHS Repeat 661 697 1.2E-7 T 25-04-2017 IPR031325 RHS repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF05593 RHS Repeat 703 735 7.7E-6 T 25-04-2017 IPR031325 RHS repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 868 907 4.2E-5 T 25-04-2017 IPR006530 YD repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 682 722 6.7E-6 T 25-04-2017 IPR006530 YD repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 745 784 2.3E-4 T 25-04-2017 IPR006530 YD repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 535 572 3.5E-6 T 25-04-2017 IPR006530 YD repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 640 680 1.1E-11 T 25-04-2017 IPR006530 YD repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 708 744 1.1E-4 T 25-04-2017 IPR006530 YD repeat A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 Pfam PF05488 PAAR motif 88 154 1.2E-17 T 25-04-2017 IPR008727 PAAR motif A4U88_RS11450 d85fd53d187a58b3dd7b61bdacf61c4b 1413 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1205 1289 7.1E-27 T 25-04-2017 IPR022385 Rhs repeat-associated core GO:0097264 A4U88_RS09515 650c4370fbd602df29cf79c75c98f289 309 SUPERFAMILY SSF53822 23 303 5.3E-82 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS09515 650c4370fbd602df29cf79c75c98f289 309 Gene3D G3DSA:3.40.50.2300 143 303 3.0E-52 T 25-04-2017 A4U88_RS09515 650c4370fbd602df29cf79c75c98f289 309 Pfam PF13407 Periplasmic binding protein domain 27 283 9.4E-59 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS09515 650c4370fbd602df29cf79c75c98f289 309 Gene3D G3DSA:3.40.50.2300 23 142 1.2E-31 T 25-04-2017 A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 SMART SM01360 1298 1388 1.9E-18 T 25-04-2017 IPR001599 Alpha-2-macroglobulin GO:0004866 A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 Pfam PF01835 MG2 domain 729 822 6.0E-16 T 25-04-2017 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 SUPERFAMILY SSF48239 1501 1760 4.32E-15 T 25-04-2017 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 Pfam PF00207 Alpha-2-macroglobulin family 1299 1377 1.1E-10 T 25-04-2017 IPR001599 Alpha-2-macroglobulin GO:0004866 A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 1093 1231 4.4E-13 T 25-04-2017 IPR011625 Alpha-2-macroglobulin, N-terminal 2 A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 SMART SM01359 1093 1232 8.9E-36 T 25-04-2017 IPR011625 Alpha-2-macroglobulin, N-terminal 2 A4U88_RS19315 f3385137c1765295596649fd4a061e40 1991 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 615 718 5.2E-24 T 25-04-2017 IPR021868 Alpha-2-macroglobulin MG1 domain A4U88_RS22455 87c315ef2b045ac129b5de28b0be84b6 282 SUPERFAMILY SSF51197 5 280 6.87E-97 T 25-04-2017 A4U88_RS22455 87c315ef2b045ac129b5de28b0be84b6 282 Gene3D G3DSA:3.60.130.10 3 280 8.6E-98 T 25-04-2017 A4U88_RS22455 87c315ef2b045ac129b5de28b0be84b6 282 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 7 272 6.3E-67 T 25-04-2017 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 A4U88_RS21255 00ed28ddcef37b0ee892ece4a43450cf 243 Gene3D G3DSA:1.10.3810.10 64 232 3.6E-59 T 25-04-2017 A4U88_RS21255 00ed28ddcef37b0ee892ece4a43450cf 243 Pfam PF00912 Transglycosylase 62 228 4.7E-49 T 25-04-2017 IPR001264 Glycosyl transferase, family 51 A4U88_RS21255 00ed28ddcef37b0ee892ece4a43450cf 243 SUPERFAMILY SSF53955 57 232 1.07E-58 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS21255 00ed28ddcef37b0ee892ece4a43450cf 243 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 21 232 9.3E-82 T 25-04-2017 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 A4U88_RS21255 00ed28ddcef37b0ee892ece4a43450cf 243 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 9 234 41.661 T 25-04-2017 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 SUPERFAMILY SSF52777 36 189 3.56E-16 T 25-04-2017 A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 SUPERFAMILY SSF52777 702 955 2.89E-36 T 25-04-2017 A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 SUPERFAMILY SSF47336 430 495 2.09E-11 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 Gene3D G3DSA:1.10.1200.10 430 498 3.2E-13 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 SUPERFAMILY SSF52777 521 697 1.56E-35 T 25-04-2017 A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 Pfam PF00550 Phosphopantetheine attachment site 443 495 3.0E-8 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 SMART SM00823 Phosphopantetheine attachment site 430 500 0.0017 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 Pfam PF00668 Condensation domain 518 817 9.0E-38 T 25-04-2017 IPR001242 Condensation domain A4U88_RS01345 bf6a624db65fe52aa2947b73dc15dfcf 969 Pfam PF00668 Condensation domain 31 187 1.0E-5 T 25-04-2017 IPR001242 Condensation domain A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 248 1.4E-22 T 25-04-2017 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 Gene3D G3DSA:2.30.130.10 250 312 7.7E-29 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 3.7E-59 T 25-04-2017 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 SUPERFAMILY SSF88697 251 310 3.28E-14 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 6.8E-20 T 25-04-2017 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 18.99 T 25-04-2017 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 SUPERFAMILY SSF55120 10 248 4.89E-84 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS01975 444412f585b0333f2b7fc44e571e9657 314 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 5.6E-94 T 25-04-2017 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS19480 efddfa4bdbc315cfb04477b05694939c 238 Pfam PF03741 Integral membrane protein TerC family 16 202 1.9E-53 T 25-04-2017 IPR005496 Integral membrane protein TerC GO:0016021 A4U88_RS15445 6a555b0e0fca9f0890c9113920d91918 502 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 43 416 3.8E-82 T 25-04-2017 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type A4U88_RS15445 6a555b0e0fca9f0890c9113920d91918 502 Gene3D G3DSA:3.40.50.1820 137 350 1.4E-8 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15445 6a555b0e0fca9f0890c9113920d91918 502 SUPERFAMILY SSF53474 206 339 1.62E-7 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15445 6a555b0e0fca9f0890c9113920d91918 502 PIRSF PIRSF014728 3 493 2.5E-122 T 25-04-2017 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 SMART SM00062 26 249 2.4E-59 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 SMART SM00079 26 248 7.5E-6 T 25-04-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 Gene3D G3DSA:3.40.190.10 104 208 1.4E-17 T 25-04-2017 A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 SUPERFAMILY SSF53850 2 249 1.83E-65 T 25-04-2017 A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 Gene3D G3DSA:3.40.190.10 24 103 4.8E-44 T 25-04-2017 A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 Gene3D G3DSA:3.40.190.10 209 250 4.8E-44 T 25-04-2017 A4U88_RS03640 636953a47dd46bc692421bb213f94980 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 247 8.7E-61 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS06365 228c1647ab412a40a910be0b16f69561 310 SUPERFAMILY SSF51395 1 301 2.38E-70 T 25-04-2017 A4U88_RS06365 228c1647ab412a40a910be0b16f69561 310 PIRSF PIRSF006621 1 309 2.7E-80 T 25-04-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS06365 228c1647ab412a40a910be0b16f69561 310 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 51.534 T 25-04-2017 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 A4U88_RS06365 228c1647ab412a40a910be0b16f69561 310 Pfam PF01207 Dihydrouridine synthase (Dus) 5 294 4.6E-88 T 25-04-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS06365 228c1647ab412a40a910be0b16f69561 310 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 25-04-2017 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS06365 228c1647ab412a40a910be0b16f69561 310 Gene3D G3DSA:3.20.20.70 2 241 6.1E-64 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS11605 53e335d373abf3fa0549aeda93c568a8 434 SUPERFAMILY SSF103378 5 400 4.32E-78 T 25-04-2017 IPR005656 MmgE/PrpD GO:0016829 A4U88_RS11605 53e335d373abf3fa0549aeda93c568a8 434 Pfam PF03972 MmgE/PrpD family 22 383 1.7E-69 T 25-04-2017 IPR005656 MmgE/PrpD GO:0016829 A4U88_RS11605 53e335d373abf3fa0549aeda93c568a8 434 Gene3D G3DSA:3.30.1330.120 251 382 3.1E-24 T 25-04-2017 A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 Pfam PF13558 Putative exonuclease SbcCD, C subunit 967 1037 4.3E-15 T 25-04-2017 A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 Gene3D G3DSA:3.40.50.300 969 1056 6.3E-13 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 TIGRFAM TIGR00618 sbcc: exonuclease SbcC 1 1073 5.8E-200 T 25-04-2017 IPR004592 Nuclease SbcC, gammaproteobacteria type A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 SUPERFAMILY SSF52540 26 227 8.62E-28 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 SUPERFAMILY SSF52540 973 1055 8.62E-28 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 Pfam PF13476 AAA domain 5 216 1.5E-21 T 25-04-2017 A4U88_RS04720 86cdad26b1094f11a431e6ead832c1e2 1083 Gene3D G3DSA:3.40.50.300 1 163 7.6E-22 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03495 d1ce8cac7461988475044e50b97f048d 233 SUPERFAMILY SSF53167 1 229 1.83E-74 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS03495 d1ce8cac7461988475044e50b97f048d 233 Gene3D G3DSA:3.40.50.1580 1 230 1.2E-76 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS03495 d1ce8cac7461988475044e50b97f048d 233 Pfam PF01048 Phosphorylase superfamily 2 225 5.2E-48 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS03495 d1ce8cac7461988475044e50b97f048d 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 228 4.2E-114 T 25-04-2017 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03495 d1ce8cac7461988475044e50b97f048d 233 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.941 T 25-04-2017 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS15835 58d69b9b9a6271cceb4281403564ca79 487 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 479 3.6E-161 T 25-04-2017 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 A4U88_RS15835 58d69b9b9a6271cceb4281403564ca79 487 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 485 8.5E-172 T 25-04-2017 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 A4U88_RS15835 58d69b9b9a6271cceb4281403564ca79 487 PIRSF PIRSF002457 1 487 1.7E-154 T 25-04-2017 IPR030676 Citrate carrier CitT-related A4U88_RS04740 c3da45bbdf87d8b7c6eca28a2fe636f6 320 Gene3D G3DSA:3.40.190.10 32 109 1.9E-8 T 25-04-2017 A4U88_RS04740 c3da45bbdf87d8b7c6eca28a2fe636f6 320 Gene3D G3DSA:3.40.190.10 255 307 1.9E-8 T 25-04-2017 A4U88_RS04740 c3da45bbdf87d8b7c6eca28a2fe636f6 320 Pfam PF12849 PBP superfamily domain 29 282 4.6E-28 T 25-04-2017 IPR024370 PBP domain A4U88_RS04740 c3da45bbdf87d8b7c6eca28a2fe636f6 320 SUPERFAMILY SSF53850 25 309 8.8E-66 T 25-04-2017 A4U88_RS04740 c3da45bbdf87d8b7c6eca28a2fe636f6 320 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 27 297 1.9E-67 T 25-04-2017 IPR011862 Phosphate binding protein GO:0006810 A4U88_RS04740 c3da45bbdf87d8b7c6eca28a2fe636f6 320 Gene3D G3DSA:3.40.190.10 112 254 2.9E-32 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1016 1031 - T 25-04-2017 IPR006162 Phosphopantetheine attachment site A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Pfam PF00501 AMP-binding enzyme 476 877 4.4E-100 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 ProSitePatterns PS00455 Putative AMP-binding domain signature. 614 625 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Pfam PF13193 AMP-binding enzyme C-terminal domain 885 967 2.4E-6 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:2.30.38.10 790 867 4.3E-27 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Pfam PF00975 Thioesterase domain 1084 1296 4.0E-37 T 25-04-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SUPERFAMILY SSF56801 451 1003 2.75E-153 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Pfam PF00550 Phosphopantetheine attachment site 994 1057 4.5E-10 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SUPERFAMILY SSF52777 202 460 8.12E-34 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:3.40.50.980 469 635 4.1E-44 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SUPERFAMILY SSF52777 21 195 4.34E-33 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:3.30.300.30 872 995 8.5E-29 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:3.40.50.1820 1070 1187 1.7E-40 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:3.40.50.1820 1246 1312 1.7E-40 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:1.10.1200.10 996 1063 7.4E-21 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SUPERFAMILY SSF47336 986 1058 1.57E-13 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Gene3D G3DSA:3.40.50.980 636 789 6.4E-48 T 25-04-2017 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SMART SM00824 Thioesterase 1086 1306 9.7E-6 T 25-04-2017 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 Pfam PF00668 Condensation domain 15 314 1.6E-46 T 25-04-2017 IPR001242 Condensation domain A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SUPERFAMILY SSF53474 1064 1311 2.18E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 496 900 4.4E-135 T 25-04-2017 IPR010071 Amino acid adenylation domain A4U88_RS01370 f2078bc6dc81aa93d95c35f06f7cdc9f 1314 SMART SM00823 Phosphopantetheine attachment site 992 1061 0.0068 T 25-04-2017 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 ProSitePatterns PS01244 Aconitase family signature 2. 763 776 - T 25-04-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Gene3D G3DSA:3.40.1060.10 530 643 9.4E-40 T 25-04-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 365 829 5.3E-269 T 25-04-2017 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 1.8E-136 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 SMART SM01329 6 355 9.7E-204 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 25-04-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Gene3D G3DSA:3.30.499.10 691 829 1.4E-62 T 25-04-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 51.537 T 25-04-2017 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 SUPERFAMILY SSF53732 359 829 1.2E-168 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 365 830 62.144 T 25-04-2017 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 2.0E-167 T 25-04-2017 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Gene3D G3DSA:3.30.499.10 357 522 1.0E-24 T 25-04-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 483 496 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 472 480 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 707 718 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 559 572 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 573 586 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 650 664 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 763 776 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 446 459 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 PRINTS PR00415 Aconitase family signature 497 512 3.4E-48 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 SUPERFAMILY SSF53659 2 360 1.26E-122 T 25-04-2017 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Gene3D G3DSA:3.40.718.10 2 356 9.7E-132 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 Pfam PF00330 Aconitase family (aconitate hydratase) 372 821 1.4E-157 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03275 008d1f63f59244db5f9917ebdcff1e97 830 ProSitePatterns PS00450 Aconitase family signature 1. 703 719 - T 25-04-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 A4U88_RS15350 42e7a292b302185fd7254dc2131caacc 205 Gene3D G3DSA:3.40.30.10 3 88 2.4E-21 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS15350 42e7a292b302185fd7254dc2131caacc 205 SUPERFAMILY SSF47616 79 194 2.23E-25 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS15350 42e7a292b302185fd7254dc2131caacc 205 SUPERFAMILY SSF52833 3 103 1.79E-19 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS15350 42e7a292b302185fd7254dc2131caacc 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 121 191 1.7E-8 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS15350 42e7a292b302185fd7254dc2131caacc 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 78 1.3E-14 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS15350 42e7a292b302185fd7254dc2131caacc 205 Gene3D G3DSA:1.20.1050.10 89 198 1.6E-28 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 Pfam PF00106 short chain dehydrogenase 4 176 5.3E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 Gene3D G3DSA:3.40.50.720 3 181 2.8E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 3.8E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.8E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 3.8E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 3.8E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS15630 d727fa953e8b58c75d110b7d224c4e88 244 SUPERFAMILY SSF51735 2 209 2.31E-34 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13005 3b01c2a6c59468e74cdcc1b3bc0a44de 285 Pfam PF02811 PHP domain 7 161 7.3E-7 T 25-04-2017 IPR004013 PHP domain GO:0003824 A4U88_RS13005 3b01c2a6c59468e74cdcc1b3bc0a44de 285 SMART SM00481 6 73 3.1E-17 T 25-04-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 A4U88_RS13005 3b01c2a6c59468e74cdcc1b3bc0a44de 285 Gene3D G3DSA:3.20.20.140 6 91 1.6E-41 T 25-04-2017 A4U88_RS13005 3b01c2a6c59468e74cdcc1b3bc0a44de 285 Gene3D G3DSA:3.20.20.140 160 262 1.6E-41 T 25-04-2017 A4U88_RS13005 3b01c2a6c59468e74cdcc1b3bc0a44de 285 SUPERFAMILY SSF89550 168 279 8.24E-52 T 25-04-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 A4U88_RS13005 3b01c2a6c59468e74cdcc1b3bc0a44de 285 SUPERFAMILY SSF89550 5 86 8.24E-52 T 25-04-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 418 571 1.0E-6 T 25-04-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 619 652 1.8E-7 T 25-04-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 16 171 1.0E-26 T 25-04-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Gene3D G3DSA:3.90.740.10 223 424 1.9E-58 T 25-04-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 1.2E-78 T 25-04-2017 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.498 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Gene3D G3DSA:1.10.730.10 648 795 6.8E-46 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Pfam PF08264 Anticodon-binding domain of tRNA 700 822 1.2E-17 T 25-04-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.8E-52 T 25-04-2017 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Gene3D G3DSA:3.40.50.620 425 573 2.1E-151 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Gene3D G3DSA:3.40.50.620 618 647 2.1E-151 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 Gene3D G3DSA:3.40.50.620 4 222 2.1E-151 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 SUPERFAMILY SSF50677 226 415 2.2E-56 T 25-04-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 SUPERFAMILY SSF52374 416 668 1.44E-140 T 25-04-2017 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 SUPERFAMILY SSF52374 5 226 1.44E-140 T 25-04-2017 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 SUPERFAMILY SSF47323 662 859 5.98E-39 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS05650 89416a5e4269f0af2e82bf392c5498bf 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS02530 92930bced525a7dc5547fd0b346aecd9 306 SUPERFAMILY SSF141523 177 233 1.83E-26 T 25-04-2017 A4U88_RS02530 92930bced525a7dc5547fd0b346aecd9 306 SUPERFAMILY SSF141523 94 148 1.83E-26 T 25-04-2017 A4U88_RS02530 92930bced525a7dc5547fd0b346aecd9 306 Pfam PF03734 L,D-transpeptidase catalytic domain 100 231 2.0E-16 T 25-04-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 A4U88_RS02530 92930bced525a7dc5547fd0b346aecd9 306 Gene3D G3DSA:2.40.440.10 92 234 1.6E-33 T 25-04-2017 A4U88_RS02320 12dc8efd09c9d531798859b5d63d1f1a 403 SUPERFAMILY SSF116734 2 200 1.13E-32 T 25-04-2017 A4U88_RS02320 12dc8efd09c9d531798859b5d63d1f1a 403 SUPERFAMILY SSF116734 196 399 1.55E-26 T 25-04-2017 A4U88_RS02320 12dc8efd09c9d531798859b5d63d1f1a 403 Pfam PF01420 Type I restriction modification DNA specificity domain 2 183 1.5E-17 T 25-04-2017 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 A4U88_RS02320 12dc8efd09c9d531798859b5d63d1f1a 403 Pfam PF01420 Type I restriction modification DNA specificity domain 263 367 1.1E-7 T 25-04-2017 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 Gene3D G3DSA:3.30.70.140 2 98 2.6E-37 T 25-04-2017 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 SUPERFAMILY SSF54893 2 100 3.92E-35 T 25-04-2017 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 SUPERFAMILY SSF57825 101 151 7.85E-15 T 25-04-2017 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 Gene3D G3DSA:2.30.30.20 101 151 8.6E-22 T 25-04-2017 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 7.8E-30 T 25-04-2017 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 149 3.8E-18 T 25-04-2017 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.504 T 25-04-2017 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 151 2.4E-64 T 25-04-2017 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 A4U88_RS02230 87e96ff02ba3c87fde6ccf88407d12d6 154 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 2.0E-40 T 25-04-2017 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal A4U88_RS23180 6226b27fc41d38d302ce8837a3862bf0 680 Gene3D G3DSA:3.40.390.10 360 504 1.8E-61 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS23180 6226b27fc41d38d302ce8837a3862bf0 680 Gene3D G3DSA:1.10.1370.10 140 349 2.3E-143 T 25-04-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 A4U88_RS23180 6226b27fc41d38d302ce8837a3862bf0 680 Gene3D G3DSA:1.10.1370.10 505 678 2.3E-143 T 25-04-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 A4U88_RS23180 6226b27fc41d38d302ce8837a3862bf0 680 Pfam PF01432 Peptidase family M3 222 677 4.7E-168 T 25-04-2017 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 A4U88_RS23180 6226b27fc41d38d302ce8837a3862bf0 680 Gene3D G3DSA:1.20.1050.40 7 138 9.7E-27 T 25-04-2017 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal A4U88_RS23180 6226b27fc41d38d302ce8837a3862bf0 680 SUPERFAMILY SSF55486 1 677 7.54E-211 T 25-04-2017 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 SMART SM00448 475 587 1.1E-5 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 Gene3D G3DSA:3.30.565.10 297 445 5.2E-33 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 SUPERFAMILY SSF55874 281 445 2.75E-35 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 SMART SM00388 227 292 6.5E-9 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 339 445 4.8E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 SUPERFAMILY SSF47384 210 293 1.35E-13 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 Gene3D G3DSA:3.40.50.2300 477 589 8.3E-16 T 25-04-2017 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 292 2.1E-9 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 Gene3D G3DSA:1.10.287.130 219 288 6.5E-7 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 SUPERFAMILY SSF52172 477 590 1.57E-15 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 Pfam PF00072 Response regulator receiver domain 478 587 1.0E-8 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 8.8E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 8.8E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 446 8.8E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 8.8E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18290 1a74649c556b6fbf3abdb99224d7d3cc 593 SMART SM00387 338 449 3.5E-19 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS08120 884242c40961703b0bdcbd0cdefa8435 249 Pfam PF00005 ABC transporter 27 177 1.0E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08120 884242c40961703b0bdcbd0cdefa8435 249 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS08120 884242c40961703b0bdcbd0cdefa8435 249 SUPERFAMILY SSF52540 10 243 5.32E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08120 884242c40961703b0bdcbd0cdefa8435 249 Gene3D G3DSA:3.40.50.300 9 241 3.5E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08120 884242c40961703b0bdcbd0cdefa8435 249 PIRSF PIRSF039085 7 249 4.3E-85 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS08120 884242c40961703b0bdcbd0cdefa8435 249 SMART SM00382 34 225 3.4E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Gene3D G3DSA:3.10.50.40 281 406 1.3E-35 T 25-04-2017 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Gene3D G3DSA:3.10.50.40 166 277 3.3E-32 T 25-04-2017 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Pfam PF13616 PPIC-type PPIASE domain 282 383 9.6E-25 T 25-04-2017 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Pfam PF13616 PPIC-type PPIASE domain 160 273 2.2E-19 T 25-04-2017 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 SUPERFAMILY SSF109998 25 200 2.62E-45 T 25-04-2017 IPR027304 Trigger factor/SurA domain A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Pfam PF09312 SurA N-terminal domain 25 142 8.4E-45 T 25-04-2017 IPR015391 SurA N-terminal A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 SUPERFAMILY SSF54534 173 276 8.5E-29 T 25-04-2017 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.533 T 25-04-2017 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 SUPERFAMILY SSF54534 283 385 2.49E-31 T 25-04-2017 A4U88_RS03190 b0b1ffe8aec525f9212b0f344d974c92 433 Gene3D G3DSA:1.10.3120.10 37 115 5.8E-6 T 25-04-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 A4U88_RS21590 ac7a9a142c44eb53306ee46185c16e6b 286 SUPERFAMILY SSF56317 2 267 2.49E-72 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS21590 ac7a9a142c44eb53306ee46185c16e6b 286 Pfam PF00795 Carbon-nitrogen hydrolase 6 255 1.4E-45 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS21590 ac7a9a142c44eb53306ee46185c16e6b 286 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 25-04-2017 IPR001110 Uncharacterised protein family UPF0012, conserved site A4U88_RS21590 ac7a9a142c44eb53306ee46185c16e6b 286 Gene3D G3DSA:3.60.110.10 1 271 6.7E-79 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 SUPERFAMILY SSF56300 1 259 1.46E-57 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.659 T 25-04-2017 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 PIRSF PIRSF000903 1 274 8.8E-123 T 25-04-2017 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 Gene3D G3DSA:3.60.21.10 169 270 1.2E-54 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 Gene3D G3DSA:3.60.21.10 1 132 1.2E-54 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 270 8.2E-148 T 25-04-2017 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 A4U88_RS03170 cd5e91db36ac68b07f14beaec38e2890 283 Pfam PF00149 Calcineurin-like phosphoesterase 2 127 7.1E-14 T 25-04-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 25-04-2017 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 Gene3D G3DSA:3.40.190.10 3 139 2.0E-52 T 25-04-2017 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 4.8E-48 T 25-04-2017 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 Gene3D G3DSA:3.30.70.120 226 299 3.0E-30 T 25-04-2017 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 201 298 1.1E-31 T 25-04-2017 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.918 T 25-04-2017 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 SUPERFAMILY SSF53850 6 224 7.69E-70 T 25-04-2017 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 1.0E-56 T 25-04-2017 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 SUPERFAMILY SSF54913 226 298 4.34E-21 T 25-04-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta A4U88_RS07850 c5e4810584d1f7c6cbd9677d833f795c 299 Pfam PF08029 HisG, C-terminal domain 223 296 1.3E-23 T 25-04-2017 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 A4U88_RS20300 94379faedc722a871ad1a97f81cfb4b3 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 26 48 1.0E-12 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS20300 94379faedc722a871ad1a97f81cfb4b3 51 PRINTS PR00281 Hok/Gef cell toxic protein family signature 6 24 1.0E-12 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS20300 94379faedc722a871ad1a97f81cfb4b3 51 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 11 30 - T 25-04-2017 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 A4U88_RS20300 94379faedc722a871ad1a97f81cfb4b3 51 Pfam PF01848 Hok/gef family 8 47 8.1E-19 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS20300 94379faedc722a871ad1a97f81cfb4b3 51 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 2 49 9.0E-10 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS17810 ae740f6aef7fa2e8e1691fe2fc2dc701 191 Pfam PF00293 NUDIX domain 45 166 4.8E-11 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS17810 ae740f6aef7fa2e8e1691fe2fc2dc701 191 Gene3D G3DSA:3.90.79.10 4 187 3.2E-60 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS17810 ae740f6aef7fa2e8e1691fe2fc2dc701 191 SUPERFAMILY SSF55811 10 188 8.94E-51 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS17810 ae740f6aef7fa2e8e1691fe2fc2dc701 191 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 9 186 1.4E-60 T 25-04-2017 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 Gene3D G3DSA:3.40.50.20 2 129 1.8E-55 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 Gene3D G3DSA:3.30.1490.20 137 191 1.9E-31 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 3.2E-80 T 25-04-2017 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 312 9.3E-140 T 25-04-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 2.2E-47 T 25-04-2017 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 Gene3D G3DSA:3.30.470.20 192 298 2.4E-49 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 SUPERFAMILY SSF56059 123 312 6.41E-60 T 25-04-2017 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 183.022 T 25-04-2017 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 A4U88_RS20550 8395cbd13bfa3c4feaf561f37b2fcb2b 316 SUPERFAMILY SSF52440 2 122 5.47E-45 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS16475 86e20336277ea82c9d932a15d864c9ab 593 PIRSF PIRSF004950 6 593 1.6E-236 T 25-04-2017 IPR012159 Inner membrane protein YejM A4U88_RS16475 86e20336277ea82c9d932a15d864c9ab 593 Pfam PF00884 Sulfatase 261 507 1.5E-31 T 25-04-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 A4U88_RS16475 86e20336277ea82c9d932a15d864c9ab 593 SUPERFAMILY SSF53649 256 563 1.46E-54 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS16475 86e20336277ea82c9d932a15d864c9ab 593 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 2.3E-108 T 25-04-2017 IPR024588 Inner membrane protein YejM, N-terminal A4U88_RS16475 86e20336277ea82c9d932a15d864c9ab 593 Gene3D G3DSA:3.40.720.10 260 527 1.1E-35 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 Pfam PF03104 DNA polymerase family B, exonuclease domain 205 299 1.9E-6 T 25-04-2017 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 Pfam PF00136 DNA polymerase family B 381 741 1.4E-41 T 25-04-2017 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 Gene3D G3DSA:3.30.420.10 151 366 5.4E-34 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 SUPERFAMILY SSF56672 388 782 1.22E-115 T 25-04-2017 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 ProSitePatterns PS00116 DNA polymerase family B signature. 546 554 - T 25-04-2017 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 Gene3D G3DSA:3.90.1600.10 515 584 9.0E-12 T 25-04-2017 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 Gene3D G3DSA:3.90.1600.10 390 434 9.0E-12 T 25-04-2017 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 418 431 3.6E-10 T 25-04-2017 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 492 504 3.6E-10 T 25-04-2017 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 544 552 3.6E-10 T 25-04-2017 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 SMART SM00486 151 558 1.6E-65 T 25-04-2017 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03215 79767324f14d2fa920f57f5c84c70b76 788 SUPERFAMILY SSF53098 5 392 3.25E-96 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS17670 3021047daaa2aecfa8d5d265c7fce998 160 Pfam PF11143 Protein of unknown function (DUF2919) 14 154 8.7E-47 T 25-04-2017 IPR021318 Protein of unknown function DUF2919 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Pfam PF14579 Helix-hairpin-helix motif 808 899 1.1E-22 T 25-04-2017 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Pfam PF02811 PHP domain 8 171 2.6E-42 T 25-04-2017 IPR004013 PHP domain GO:0003824 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Gene3D G3DSA:2.40.50.140 984 1080 4.8E-10 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 295 734 5.5E-177 T 25-04-2017 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1033 0.0 T 25-04-2017 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Gene3D G3DSA:1.10.150.280 836 885 6.4E-5 T 25-04-2017 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Pfam PF01336 OB-fold nucleic acid binding domain 1002 1073 2.2E-7 T 25-04-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 SUPERFAMILY SSF89550 6 263 3.73E-14 T 25-04-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 SMART SM00481 7 74 2.9E-24 T 25-04-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 A4U88_RS19200 f23839bc85c23c9d9bbca9a6aecc3f30 1162 Gene3D G3DSA:3.20.20.140 6 256 4.7E-20 T 25-04-2017 A4U88_RS06195 f73ac3b1bcf2e929df16b6c6c1eca842 262 SMART SM00382 34 218 1.9E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06195 f73ac3b1bcf2e929df16b6c6c1eca842 262 Gene3D G3DSA:3.40.50.300 14 242 4.8E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06195 f73ac3b1bcf2e929df16b6c6c1eca842 262 Pfam PF00005 ABC transporter 25 174 1.6E-28 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06195 f73ac3b1bcf2e929df16b6c6c1eca842 262 SUPERFAMILY SSF52540 14 235 2.4E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07005 2535508df851e21d48108dd30e69ccda 257 SUPERFAMILY SSF161098 50 238 3.27E-35 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07005 2535508df851e21d48108dd30e69ccda 257 Gene3D G3DSA:1.10.3720.10 46 244 9.3E-31 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07005 2535508df851e21d48108dd30e69ccda 257 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 243 1.3E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 5.8E-14 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 SUPERFAMILY SSF46785 13 85 2.77E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 SUPERFAMILY SSF55781 77 259 2.03E-53 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 SMART SM00346 13 102 1.1E-34 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 1.4E-42 T 25-04-2017 IPR014757 Transcription regulator IclR, C-terminal A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 Gene3D G3DSA:3.30.450.40 86 261 6.6E-66 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS10345 eebf3af99d06b6ebc899458bdadfa3f8 263 Gene3D G3DSA:1.10.10.10 12 85 3.1E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 Gene3D G3DSA:3.20.20.70 25 348 9.1E-41 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 SUPERFAMILY SSF102114 24 345 1.01E-40 T 25-04-2017 A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 SMART SM00729 23 237 0.0026 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 276 350 3.4E-14 T 25-04-2017 IPR023885 4Fe4S-binding SPASM domain A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 Pfam PF13353 4Fe-4S single cluster domain 32 146 6.4E-5 T 25-04-2017 A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 Pfam PF04055 Radical SAM superfamily 30 196 2.4E-14 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS02640 c610513ce8c16123af8ded20991d620d 394 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 24 372 5.6E-118 T 25-04-2017 IPR023867 Anaerobic sulphatase maturase, radical SAM GO:0016491 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 474 599 3.7E-51 T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 475 595 1.5E-47 T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 Pfam PF02378 Phosphotransferase system, EIIC 108 392 2.6E-25 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 3 619 1.2E-217 T 25-04-2017 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 Gene3D G3DSA:3.30.1360.60 1 79 2.3E-27 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 SUPERFAMILY SSF55604 6 79 9.42E-20 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 537 549 - T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 Gene3D G3DSA:2.70.70.10 470 619 3.9E-59 T 25-04-2017 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 Pfam PF00367 phosphotransferase system, EIIB 9 41 2.4E-13 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS00360 0912c7293b71912ae92eb818c6e3285c 621 SUPERFAMILY SSF51261 470 611 4.53E-52 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 Gene3D G3DSA:2.60.40.1070 154 235 5.7E-16 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 SUPERFAMILY SSF49354 24 151 1.36E-34 T 25-04-2017 IPR008962 PapD-like A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 151 4.6E-36 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 SUPERFAMILY SSF49584 145 236 1.03E-14 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 173 230 6.9E-12 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 PRINTS PR00969 Pili chaperone signature 133 148 1.4E-24 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 PRINTS PR00969 Pili chaperone signature 168 183 1.4E-24 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 PRINTS PR00969 Pili chaperone signature 79 100 1.4E-24 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 PRINTS PR00969 Pili chaperone signature 30 39 1.4E-24 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 PRINTS PR00969 Pili chaperone signature 107 124 1.4E-24 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09640 7932aea9fc40b275b2739e628c8795bd 240 Gene3D G3DSA:2.60.40.360 29 152 2.1E-35 T 25-04-2017 IPR008962 PapD-like A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 Pfam PF00108 Thiolase, N-terminal domain 6 267 8.3E-70 T 25-04-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 Gene3D G3DSA:3.40.47.10 200 281 1.1E-62 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 Gene3D G3DSA:3.40.47.10 4 125 1.1E-62 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 SUPERFAMILY SSF53901 4 275 2.62E-75 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 25-04-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 25-04-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 SUPERFAMILY SSF53901 276 399 9.98E-44 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 25-04-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 4 400 1.3E-210 T 25-04-2017 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 7.6E-43 T 25-04-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 Gene3D G3DSA:3.40.47.10 282 399 5.0E-57 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 Gene3D G3DSA:3.40.47.10 152 199 5.0E-57 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 PIRSF PIRSF000429 1 400 5.3E-126 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS14845 21b3aa5f3b6e2a669060e4fa66ee4384 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 7 398 3.1E-131 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 173 227 3.1E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 Gene3D G3DSA:3.30.450.80 13 176 8.8E-36 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 SUPERFAMILY SSF46894 165 234 5.1E-15 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 188 8.6E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 204 216 8.6E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 204 8.6E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 Pfam PF03472 Autoinducer binding domain 27 152 1.7E-25 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 Gene3D G3DSA:1.10.10.10 177 234 6.9E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 SMART SM00421 171 228 6.1E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02295 4b06d286399900e0ebbb76a13ed8ca3b 238 SUPERFAMILY SSF75516 14 159 2.75E-33 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS16425 5b481a6c617e46a8e5a65f89d428f9c4 363 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 150 357 5.0E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16425 5b481a6c617e46a8e5a65f89d428f9c4 363 Gene3D G3DSA:1.10.3720.10 125 349 4.8E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16425 5b481a6c617e46a8e5a65f89d428f9c4 363 SUPERFAMILY SSF161098 127 344 4.97E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 SMART SM00347 28 129 4.6E-14 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 70 85 6.1E-6 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 105 6.1E-6 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 PRINTS PR00598 Bacterial regulatory protein MarR family signature 119 139 6.1E-6 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 Pfam PF01047 MarR family 35 93 4.5E-7 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 SUPERFAMILY SSF46785 6 144 1.42E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06630 36d336a9820aa2beff39694a23661698 174 Gene3D G3DSA:1.10.10.10 3 140 2.9E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Gene3D G3DSA:2.40.50.140 1 66 7.5E-28 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 SMART SM00278 73 92 0.054 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 SMART SM00278 108 127 0.15 T 25-04-2017 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 33.136 T 25-04-2017 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 SUPERFAMILY SSF47781 66 136 1.0E-22 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 204 8.5E-70 T 25-04-2017 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 SUPERFAMILY SSF46929 159 202 1.57E-10 T 25-04-2017 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Pfam PF07499 RuvA, C-terminal domain 160 202 8.4E-16 T 25-04-2017 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Gene3D G3DSA:1.10.8.10 159 201 1.0E-22 T 25-04-2017 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 SUPERFAMILY SSF50249 1 63 6.85E-19 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Pfam PF01330 RuvA N terminal domain 1 62 9.7E-21 T 25-04-2017 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Gene3D G3DSA:1.10.150.20 67 138 2.6E-32 T 25-04-2017 A4U88_RS13590 830e04fedc71efea178d907f63ceb121 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 4.4E-17 T 25-04-2017 A4U88_RS19105 f756b871fbfdbc68c13df95924095e64 217 SUPERFAMILY SSF161098 9 201 2.35E-47 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS19105 f756b871fbfdbc68c13df95924095e64 217 Gene3D G3DSA:1.10.3720.10 9 214 2.8E-42 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS19105 f756b871fbfdbc68c13df95924095e64 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 214 4.7E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 6.3E-6 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 6.3E-6 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 6.3E-6 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 Gene3D G3DSA:3.40.50.2300 146 345 5.7E-73 T 25-04-2017 A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 1.1E-177 T 25-04-2017 IPR017777 ABC transporter, urea, substrate-binding, UrtA A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 SUPERFAMILY SSF53822 30 409 4.71E-93 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS06840 fd0cf081808fdcc81f4b281923a4c2c8 422 Pfam PF13433 Periplasmic binding protein domain 31 407 2.6E-172 T 25-04-2017 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 Hamap MF_00492 Transaldolase [tal]. 1 316 52.13 T 25-04-2017 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 Pfam PF00923 Transaldolase 13 311 1.4E-100 T 25-04-2017 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 SUPERFAMILY SSF51569 1 314 1.36E-113 T 25-04-2017 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 Gene3D G3DSA:3.20.20.70 1 315 2.0E-132 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 TIGRFAM TIGR00874 talAB: transaldolase 2 315 1.8E-157 T 25-04-2017 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 ProSitePatterns PS00958 Transaldolase active site. 128 145 - T 25-04-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS17800 1ec1f5508a56eae7d46d403525ccd53a 316 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 25-04-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS15065 20629238622a41aec5909382b1cbde9e 364 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 6 341 7.3E-95 T 25-04-2017 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 A4U88_RS15065 20629238622a41aec5909382b1cbde9e 364 Pfam PF05125 Phage major capsid protein, P2 family 9 339 1.1E-146 T 25-04-2017 IPR006441 Bacteriophage P2, GpN, major capsid GO:0019028 A4U88_RS11530 8f9de8b3f50a100b606984e6fa3e62b2 149 Pfam PF13463 Winged helix DNA-binding domain 36 99 7.3E-10 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS11530 8f9de8b3f50a100b606984e6fa3e62b2 149 Gene3D G3DSA:1.10.287.100 97 142 1.3E-15 T 25-04-2017 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 A4U88_RS11530 8f9de8b3f50a100b606984e6fa3e62b2 149 SUPERFAMILY SSF46785 10 142 2.59E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11530 8f9de8b3f50a100b606984e6fa3e62b2 149 Gene3D G3DSA:1.10.10.10 34 96 6.3E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11530 8f9de8b3f50a100b606984e6fa3e62b2 149 SMART SM00347 25 127 4.0E-19 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 9.7E-5 T 25-04-2017 A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 9.7E-5 T 25-04-2017 A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 Gene3D G3DSA:3.40.50.880 1 196 2.1E-73 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 SUPERFAMILY SSF52317 3 195 2.37E-55 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 PIRSF PIRSF000495 1 196 1.9E-65 T 25-04-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.956 T 25-04-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 Pfam PF00117 Glutamine amidotransferase class-I 5 194 1.7E-19 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS07830 a6e3d468fcdd2f9039a14e5aff20b684 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 4.9E-72 T 25-04-2017 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 A4U88_RS20610 1ae9bdfb2b7dcea778f73bc746168a87 307 Gene3D G3DSA:3.40.710.10 8 307 1.4E-124 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS20610 1ae9bdfb2b7dcea778f73bc746168a87 307 Hamap MF_00313 Glutaminase [glsA]. 6 307 46.963 T 25-04-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 A4U88_RS20610 1ae9bdfb2b7dcea778f73bc746168a87 307 TIGRFAM TIGR03814 Gln_ase: glutaminase A 10 307 8.9E-130 T 25-04-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 A4U88_RS20610 1ae9bdfb2b7dcea778f73bc746168a87 307 SUPERFAMILY SSF56601 8 307 7.29E-114 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS20610 1ae9bdfb2b7dcea778f73bc746168a87 307 Pfam PF04960 Glutaminase 24 307 4.8E-113 T 25-04-2017 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 A4U88_RS17775 7dc5aed32805fdd9e07d628d7a668ea9 333 SUPERFAMILY SSF82549 10 329 1.23E-110 T 25-04-2017 A4U88_RS17775 7dc5aed32805fdd9e07d628d7a668ea9 333 Gene3D G3DSA:3.30.1180.20 185 329 9.0E-53 T 25-04-2017 A4U88_RS17775 7dc5aed32805fdd9e07d628d7a668ea9 333 Gene3D G3DSA:3.40.50.10440 11 183 7.3E-58 T 25-04-2017 A4U88_RS17775 7dc5aed32805fdd9e07d628d7a668ea9 333 Pfam PF02733 Dak1 domain 18 325 2.2E-109 T 25-04-2017 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 A4U88_RS09940 c8448413a86c81ec430f44708776e2ec 151 Gene3D G3DSA:3.40.50.620 1 145 1.6E-33 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS09940 c8448413a86c81ec430f44708776e2ec 151 SUPERFAMILY SSF52402 2 145 6.28E-31 T 25-04-2017 A4U88_RS09940 c8448413a86c81ec430f44708776e2ec 151 Pfam PF00582 Universal stress protein family 1 144 9.0E-27 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS09940 c8448413a86c81ec430f44708776e2ec 151 PRINTS PR01438 Universal stress protein signature 122 144 7.8E-14 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS09940 c8448413a86c81ec430f44708776e2ec 151 PRINTS PR01438 Universal stress protein signature 2 20 7.8E-14 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS09940 c8448413a86c81ec430f44708776e2ec 151 PRINTS PR01438 Universal stress protein signature 105 117 7.8E-14 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 PRINTS PR00799 Aspartate aminotransferase signature 269 294 5.9E-35 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 PRINTS PR00799 Aspartate aminotransferase signature 337 355 5.9E-35 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 PRINTS PR00799 Aspartate aminotransferase signature 171 190 5.9E-35 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 PRINTS PR00799 Aspartate aminotransferase signature 202 214 5.9E-35 T 25-04-2017 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 Gene3D G3DSA:3.40.640.10 46 311 2.6E-99 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 Pfam PF00155 Aminotransferase class I and II 27 388 3.1E-72 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 239 252 - T 25-04-2017 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 A4U88_RS15330 238b5324d4ad0a93fe706af5aed4d0aa 395 SUPERFAMILY SSF53383 1 392 5.3E-110 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS07625 3957184c4d2a143477b68c56b72bfe82 370 SUPERFAMILY SSF52540 109 356 1.63E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07625 3957184c4d2a143477b68c56b72bfe82 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 25-04-2017 IPR000808 Mrp, conserved site GO:0005524 A4U88_RS07625 3957184c4d2a143477b68c56b72bfe82 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 37.297 T 25-04-2017 IPR019591 Mrp/NBP35 ATP-binding protein A4U88_RS07625 3957184c4d2a143477b68c56b72bfe82 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 2.6E-99 T 25-04-2017 IPR019591 Mrp/NBP35 ATP-binding protein A4U88_RS07625 3957184c4d2a143477b68c56b72bfe82 370 Gene3D G3DSA:3.40.50.300 96 349 4.6E-103 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01245 fb16800fbc24757beb046d3a43cdc0f0 228 Hamap MF_00801 Endonuclease V [nfi]. 3 217 33.723 T 25-04-2017 IPR007581 Endonuclease V GO:0004519|GO:0006281 A4U88_RS01245 fb16800fbc24757beb046d3a43cdc0f0 228 Pfam PF04493 Endonuclease V 22 207 6.9E-70 T 25-04-2017 IPR007581 Endonuclease V GO:0004519|GO:0006281 A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 1.6E-137 T 25-04-2017 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 Gene3D G3DSA:3.40.50.1100 132 313 3.3E-75 T 25-04-2017 A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 Gene3D G3DSA:3.40.50.1100 36 131 2.0E-38 T 25-04-2017 A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 1.7E-145 T 25-04-2017 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 25-04-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 1.6E-70 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS17605 782188fc2d24050931b4fb4098c4b967 322 SUPERFAMILY SSF53686 3 316 1.96E-99 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 680 697 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 64 - T 25-04-2017 IPR010916 TonB box, conserved site A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 185 1.1E-8 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 Gene3D G3DSA:2.40.170.20 189 697 3.0E-66 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 Pfam PF00593 TonB dependent receptor 456 676 1.5E-20 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 Gene3D G3DSA:2.170.130.10 52 188 2.3E-25 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS01340 2a9a10bdc6bd4cfa08aae45c789ac2f0 697 SUPERFAMILY SSF56935 53 697 3.37E-91 T 25-04-2017 A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 SMART SM00420 7 59 1.5E-14 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 Pfam PF00455 DeoR C terminal sensor domain 76 234 2.1E-54 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 SUPERFAMILY SSF100950 75 236 7.95E-36 T 25-04-2017 A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 Pfam PF08220 DeoR-like helix-turn-helix domain 7 62 1.5E-15 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 SMART SM01134 74 235 8.9E-76 T 25-04-2017 A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 Gene3D G3DSA:1.10.10.10 1 53 9.2E-9 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 SUPERFAMILY SSF46785 6 67 1.17E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12475 ac6624af5a6205af8a4e3fa7d7b97761 256 Gene3D G3DSA:3.40.50.1360 78 216 7.1E-16 T 25-04-2017 A4U88_RS15600 158ce34aae3aad6f2e89fa1ce1a4e889 495 Gene3D G3DSA:3.40.1670.10 333 457 3.0E-19 T 25-04-2017 A4U88_RS15600 158ce34aae3aad6f2e89fa1ce1a4e889 495 SUPERFAMILY SSF143968 319 495 6.28E-34 T 25-04-2017 A4U88_RS15600 158ce34aae3aad6f2e89fa1ce1a4e889 495 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 10 444 2.8E-93 T 25-04-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 A4U88_RS15600 158ce34aae3aad6f2e89fa1ce1a4e889 495 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 14 432 2.0E-118 T 25-04-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 A4U88_RS15600 158ce34aae3aad6f2e89fa1ce1a4e889 495 SUPERFAMILY SSF50475 9 316 1.02E-85 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS15600 158ce34aae3aad6f2e89fa1ce1a4e889 495 Hamap MF_01983 UbiD-like decarboxylase. 6 495 50.133 T 25-04-2017 IPR032903 UbiD-like decarboxylase/ferulic acid decarboxylase 1 A4U88_RS09070 8fda5d332f9c8bc76b0b1723318d89d0 132 SUPERFAMILY SSF54593 9 126 1.27E-18 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS09070 8fda5d332f9c8bc76b0b1723318d89d0 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 10 123 3.6E-9 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS09070 8fda5d332f9c8bc76b0b1723318d89d0 132 Gene3D G3DSA:3.10.180.10 14 126 6.8E-10 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 30.887 T 25-04-2017 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 25-04-2017 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 Gene3D G3DSA:3.40.50.720 184 358 7.0E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 SUPERFAMILY SSF69075 317 418 6.41E-28 T 25-04-2017 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 SUPERFAMILY SSF51735 162 315 7.58E-35 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 1.9E-48 T 25-04-2017 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 6.4E-25 T 25-04-2017 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 SUPERFAMILY SSF69742 1 158 3.4E-47 T 25-04-2017 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 PIRSF PIRSF000445 1 420 1.2E-154 T 25-04-2017 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.5E-49 T 25-04-2017 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS09705 c182d044229970fb18d7554bcfe0c20e 420 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 417 1.1E-155 T 25-04-2017 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 A4U88_RS11435 b2531f52e201ad52995409d90d246256 216 Gene3D G3DSA:3.40.430.10 3 197 4.1E-25 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS11435 b2531f52e201ad52995409d90d246256 216 SUPERFAMILY SSF53597 1 197 5.89E-26 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS11435 b2531f52e201ad52995409d90d246256 216 Pfam PF01872 RibD C-terminal domain 3 191 4.9E-26 T 25-04-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 A4U88_RS23210 c7c7d8c03914bc041cfa7ef1e8129cf9 283 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 4 261 9.4E-41 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS23210 c7c7d8c03914bc041cfa7ef1e8129cf9 283 PIRSF PIRSF016184 1 279 2.2E-60 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS23210 c7c7d8c03914bc041cfa7ef1e8129cf9 283 Pfam PF02567 Phenazine biosynthesis-like protein 8 274 6.2E-45 T 25-04-2017 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 A4U88_RS23210 c7c7d8c03914bc041cfa7ef1e8129cf9 283 Gene3D G3DSA:3.10.310.10 5 123 1.9E-38 T 25-04-2017 A4U88_RS23210 c7c7d8c03914bc041cfa7ef1e8129cf9 283 SUPERFAMILY SSF54506 2 277 9.72E-65 T 25-04-2017 A4U88_RS23210 c7c7d8c03914bc041cfa7ef1e8129cf9 283 Gene3D G3DSA:3.10.310.10 125 268 4.7E-34 T 25-04-2017 A4U88_RS04765 8494058f28e272798355644c456ad075 607 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 1 101 2.4E-12 T 25-04-2017 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 A4U88_RS04765 8494058f28e272798355644c456ad075 607 SUPERFAMILY SSF81296 6 102 3.73E-5 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS04765 8494058f28e272798355644c456ad075 607 SUPERFAMILY SSF51011 527 605 2.16E-7 T 25-04-2017 A4U88_RS04765 8494058f28e272798355644c456ad075 607 SMART SM00642 124 518 2.4E-88 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS04765 8494058f28e272798355644c456ad075 607 Gene3D G3DSA:2.60.40.1180 523 604 2.9E-5 T 25-04-2017 IPR013780 Glycosyl hydrolase, all-beta A4U88_RS04765 8494058f28e272798355644c456ad075 607 PIRSF PIRSF036918 1 606 4.5E-233 T 25-04-2017 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 A4U88_RS04765 8494058f28e272798355644c456ad075 607 Gene3D G3DSA:3.20.20.80 114 520 5.1E-107 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS04765 8494058f28e272798355644c456ad075 607 SUPERFAMILY SSF51445 113 527 1.14E-93 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS04765 8494058f28e272798355644c456ad075 607 Pfam PF00128 Alpha amylase, catalytic domain 174 490 3.2E-76 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Pfam PF00158 Sigma-54 interaction domain 22 178 1.6E-65 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 292 309 4.0E-8 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 309 329 4.0E-8 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Gene3D G3DSA:3.40.50.300 18 184 7.9E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 SUPERFAMILY SSF53850 352 588 1.77E-40 T 25-04-2017 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Pfam PF09084 NMT1/THI5 like 401 574 1.7E-12 T 25-04-2017 IPR015168 SsuA/THI5-like A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 98 113 - T 25-04-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Gene3D G3DSA:1.10.10.60 269 328 1.3E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 SMART SM00382 32 175 6.4E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 SUPERFAMILY SSF52540 16 253 3.3E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Gene3D G3DSA:3.40.190.10 435 558 1.1E-23 T 25-04-2017 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 355 635 1.0E-54 T 25-04-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Gene3D G3DSA:1.10.8.60 185 257 7.0E-25 T 25-04-2017 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 Pfam PF02954 Bacterial regulatory protein, Fis family 294 320 3.9E-6 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 225 234 - T 25-04-2017 IPR025944 Sigma-54 interaction domain, conserved site A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 SMART SM00062 354 577 2.9E-5 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 36 49 - T 25-04-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 A4U88_RS15765 e1b83ca5be7661a30da1c0be8d12ca1e 639 SUPERFAMILY SSF46689 225 328 6.72E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21240 1470b0f3036ea707b1ae0650fc39be6e 130 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 17 129 4.3E-40 T 25-04-2017 IPR003509 Uncharacterised protein family UPF0102 A4U88_RS21240 1470b0f3036ea707b1ae0650fc39be6e 130 Hamap MF_00048 UPF0102 protein YraN [yraN]. 16 128 21.964 T 25-04-2017 IPR003509 Uncharacterised protein family UPF0102 A4U88_RS21240 1470b0f3036ea707b1ae0650fc39be6e 130 Pfam PF02021 Uncharacterised protein family UPF0102 24 115 1.9E-23 T 25-04-2017 IPR003509 Uncharacterised protein family UPF0102 A4U88_RS21240 1470b0f3036ea707b1ae0650fc39be6e 130 SUPERFAMILY SSF52980 18 126 2.47E-18 T 25-04-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 A4U88_RS21240 1470b0f3036ea707b1ae0650fc39be6e 130 Gene3D G3DSA:3.40.1350.10 23 129 3.9E-34 T 25-04-2017 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 Pfam PF01668 SmpB protein 13 75 2.7E-29 T 25-04-2017 IPR000037 SsrA-binding protein GO:0003723 A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 73.04 T 25-04-2017 IPR000037 SsrA-binding protein GO:0003723 A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 25-04-2017 IPR020081 SsrA-binding protein, conserved site A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 Gene3D G3DSA:2.40.280.10 13 133 4.6E-50 T 25-04-2017 IPR023620 Small protein B A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 1.0E-54 T 25-04-2017 IPR000037 SsrA-binding protein GO:0003723 A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 7.6E-55 T 25-04-2017 IPR000037 SsrA-binding protein GO:0003723 A4U88_RS18740 f5e47e8dc8e0f1c1b2ab1a37d272cadd 160 SUPERFAMILY SSF74982 8 138 1.03E-50 T 25-04-2017 IPR023620 Small protein B A4U88_RS00605 b0c426e3f35df30b124510f30c50679f 467 PIRSF PIRSF006060 1 467 2.0E-61 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS00605 b0c426e3f35df30b124510f30c50679f 467 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS00605 b0c426e3f35df30b124510f30c50679f 467 Pfam PF00324 Amino acid permease 18 430 3.0E-104 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS20360 97f96687031e58d94067c9ca081ce85b 235 Pfam PF03749 Sugar fermentation stimulation protein 13 225 7.7E-76 T 25-04-2017 IPR005224 Sugar fermentation stimulation protein A4U88_RS20360 97f96687031e58d94067c9ca081ce85b 235 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 4 226 2.2E-80 T 25-04-2017 IPR005224 Sugar fermentation stimulation protein A4U88_RS20360 97f96687031e58d94067c9ca081ce85b 235 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 55.378 T 25-04-2017 IPR005224 Sugar fermentation stimulation protein A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 Gene3D G3DSA:3.90.1150.10 362 480 1.6E-5 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 SUPERFAMILY SSF46785 6 85 5.6E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.6E-6 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.6E-6 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 7.2E-17 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 SMART SM00345 17 76 1.6E-15 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 SUPERFAMILY SSF53383 102 480 4.26E-98 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 Pfam PF00155 Aminotransferase class I and II 133 474 6.0E-29 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 Gene3D G3DSA:1.10.10.10 4 77 1.2E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17095 90ceee5387d23a23e109a52a503c98a9 488 Gene3D G3DSA:3.40.640.10 145 361 2.0E-74 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 Pfam PF00155 Aminotransferase class I and II 43 348 1.8E-62 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 Gene3D G3DSA:3.40.640.10 46 251 2.6E-71 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 Gene3D G3DSA:3.90.1150.10 252 350 6.8E-24 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 352 55.375 T 25-04-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 349 2.5E-121 T 25-04-2017 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 SUPERFAMILY SSF53383 6 349 4.65E-80 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS07840 1a6ffa76501ba62060de21a8c7150f32 362 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 208 217 - T 25-04-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 4 183 43.621 T 25-04-2017 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 189 2.8E-88 T 25-04-2017 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 PIRSF PIRSF005784 3 189 8.3E-85 T 25-04-2017 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 115 126 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 Pfam PF04060 Putative Fe-S cluster 44 75 3.7E-13 T 25-04-2017 IPR007202 4Fe-4S domain GO:0051536 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 Pfam PF14697 4Fe-4S dicluster domain 108 162 3.6E-17 T 25-04-2017 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 SUPERFAMILY SSF54862 39 174 2.93E-29 T 25-04-2017 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 Gene3D G3DSA:3.30.70.20 79 176 6.8E-18 T 25-04-2017 A4U88_RS11005 e70cb8d9cef37184edb91d2fe7595ce0 190 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 PRINTS PR00344 Bacterial sensor protein C-terminal signature 517 527 5.5E-6 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 PRINTS PR00344 Bacterial sensor protein C-terminal signature 499 513 5.5E-6 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 PRINTS PR00344 Bacterial sensor protein C-terminal signature 528 546 5.5E-6 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 21 254 2.6E-35 T 25-04-2017 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 Gene3D G3DSA:1.10.287.130 346 409 8.7E-4 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 SUPERFAMILY SSF47384 341 414 1.79E-8 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 SMART SM00387 464 572 1.5E-16 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 Gene3D G3DSA:3.30.565.10 424 555 2.3E-23 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 SMART SM00388 349 418 3.7E-5 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 Gene3D G3DSA:3.40.190.10 111 198 2.8E-9 T 25-04-2017 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 SUPERFAMILY SSF55874 424 555 3.67E-23 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 SUPERFAMILY SSF53850 32 251 2.01E-13 T 25-04-2017 A4U88_RS16505 21de75291f1f3b0d9dc80ab5b84c3f44 583 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 469 568 8.7E-12 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 Gene3D G3DSA:3.40.50.300 454 631 6.5E-31 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 Pfam PF00271 Helicase conserved C-terminal domain 521 588 9.5E-6 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 TIGRFAM TIGR00595 priA: primosomal protein N' 220 729 8.8E-208 T 25-04-2017 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 SMART SM00490 491 588 6.9E-9 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 SMART SM00487 194 394 1.3E-17 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 Gene3D G3DSA:3.40.50.300 197 381 1.1E-39 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 731 25.835 T 25-04-2017 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 Pfam PF00270 DEAD/DEAH box helicase 218 363 7.3E-14 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 SUPERFAMILY SSF52540 502 600 2.57E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23530 38eb847f281b5a80b799ead169c58620 731 SUPERFAMILY SSF52540 219 439 2.57E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 SUPERFAMILY SSF116726 232 294 5.36E-11 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 558 574 - T 25-04-2017 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 Pfam PF02080 TrkA-C domain 231 298 4.3E-18 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 Pfam PF02080 TrkA-C domain 326 394 3.8E-12 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 Gene3D G3DSA:3.30.70.1450 232 310 3.4E-17 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 Gene3D G3DSA:3.30.70.1450 322 397 7.4E-23 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 SUPERFAMILY SSF116726 319 394 4.32E-18 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 Pfam PF03600 Citrate transporter 430 607 1.3E-20 T 25-04-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 A4U88_RS16890 02bcf91988b0eb32e6ffcb6721eae9c0 610 Pfam PF03600 Citrate transporter 16 196 4.4E-34 T 25-04-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 A4U88_RS02795 506e7b0d00769d4a71e6eda01cfdf891 359 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 188 349 9.9E-44 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS02795 506e7b0d00769d4a71e6eda01cfdf891 359 SMART SM00267 179 349 1.1E-57 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS02795 506e7b0d00769d4a71e6eda01cfdf891 359 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 345 1.5E-45 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS02795 506e7b0d00769d4a71e6eda01cfdf891 359 SUPERFAMILY SSF55073 195 348 1.65E-42 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS02795 506e7b0d00769d4a71e6eda01cfdf891 359 Gene3D G3DSA:3.30.70.270 192 351 8.9E-48 T 25-04-2017 A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 1.3E-8 T 25-04-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 Gene3D G3DSA:3.40.50.300 4 235 3.7E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 SMART SM00382 28 231 1.0E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 6.5E-122 T 25-04-2017 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 SUPERFAMILY SSF52540 4 236 1.27E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21400 7d4f41273a56e99fc8969ae5875cf6f8 241 Pfam PF00005 ABC transporter 20 166 9.5E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10680 dd3d6eaad36bd62e9b1804d80118d6e9 248 SUPERFAMILY SSF52540 2 231 2.78E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10680 dd3d6eaad36bd62e9b1804d80118d6e9 248 Gene3D G3DSA:3.40.50.300 1 237 2.6E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10680 dd3d6eaad36bd62e9b1804d80118d6e9 248 SMART SM00382 26 223 6.9E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS10680 dd3d6eaad36bd62e9b1804d80118d6e9 248 Pfam PF00005 ABC transporter 17 172 3.6E-21 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10680 dd3d6eaad36bd62e9b1804d80118d6e9 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS10680 dd3d6eaad36bd62e9b1804d80118d6e9 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 7.1E-113 T 25-04-2017 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 A4U88_RS09395 ef9acfd5c9d4a109fe3310337e956020 222 Gene3D G3DSA:3.30.420.10 1 156 7.5E-32 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS09395 ef9acfd5c9d4a109fe3310337e956020 222 SUPERFAMILY SSF53098 1 187 2.39E-31 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS09395 ef9acfd5c9d4a109fe3310337e956020 222 Pfam PF00929 Exonuclease 5 150 5.4E-10 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS09395 ef9acfd5c9d4a109fe3310337e956020 222 SMART SM00479 2 159 2.0E-27 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 SMART SM00345 12 71 1.0E-22 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 Gene3D G3DSA:1.20.120.530 80 236 7.0E-65 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 Gene3D G3DSA:1.10.10.10 8 76 3.7E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 SUPERFAMILY SSF48008 79 230 1.01E-63 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 Pfam PF07840 FadR C-terminal domain 72 234 6.2E-74 T 25-04-2017 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.2E-20 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 SUPERFAMILY SSF46785 11 87 2.7E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 162.336 T 25-04-2017 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 A4U88_RS13440 f53c1d5535cc9c318733be66335e809d 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 236 3.6E-122 T 25-04-2017 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Pfam PF02321 Outer membrane efflux protein 281 459 3.9E-22 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Pfam PF02321 Outer membrane efflux protein 56 230 1.1E-28 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 SUPERFAMILY SSF56954 3 463 1.31E-101 T 25-04-2017 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Gene3D G3DSA:2.20.200.10 92 136 2.5E-17 T 25-04-2017 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Gene3D G3DSA:2.20.200.10 311 346 2.5E-17 T 25-04-2017 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 8 461 6.6E-103 T 25-04-2017 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Gene3D G3DSA:1.20.1600.10 137 310 8.0E-91 T 25-04-2017 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Gene3D G3DSA:1.20.1600.10 45 82 8.0E-91 T 25-04-2017 A4U88_RS00320 29edd3f33ace24df0e0f11c370be2774 481 Gene3D G3DSA:1.20.1600.10 348 462 8.0E-91 T 25-04-2017 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 Gene3D G3DSA:1.20.1250.20 203 383 9.4E-19 T 25-04-2017 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 Gene3D G3DSA:1.20.1250.20 2 184 2.1E-41 T 25-04-2017 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 ProSitePatterns PS00216 Sugar transport proteins signature 1. 57 73 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 295 315 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 10 26 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 242 262 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 39 58 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 97 118 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 155 175 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 70 94 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 270 291 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 213 230 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 330 353 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 360 379 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 PRINTS PR01035 Tetracycline resistance protein signature 127 149 1.8E-114 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 SUPERFAMILY SSF103473 2 381 4.58E-68 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS12160 2fb590b36c9a6700ad95d46147db1975 388 Pfam PF07690 Major Facilitator Superfamily 4 255 6.7E-38 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 SUPERFAMILY SSF46689 7 56 1.39E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 SMART SM00342 22 105 1.4E-29 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 SUPERFAMILY SSF55136 165 269 2.62E-6 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 Pfam PF12833 Helix-turn-helix domain 29 106 7.0E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 Gene3D G3DSA:3.20.80.10 140 284 2.2E-19 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 Gene3D G3DSA:1.10.10.60 59 110 9.2E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 SUPERFAMILY SSF46689 58 108 8.06E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 Gene3D G3DSA:1.10.10.60 3 58 4.9E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20525 154979522ab970a691a9d2745150b41d 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 59 101 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS09975 a79d972d3328a0843def640c391c0e19 69 SUPERFAMILY SSF55331 2 65 3.95E-20 T 25-04-2017 IPR014347 Tautomerase/MIF superfamily A4U88_RS09975 a79d972d3328a0843def640c391c0e19 69 Gene3D G3DSA:3.30.429.20 1 59 1.0E-25 T 25-04-2017 A4U88_RS09975 a79d972d3328a0843def640c391c0e19 69 Pfam PF01361 Tautomerase enzyme 2 61 4.1E-21 T 25-04-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 A4U88_RS09975 a79d972d3328a0843def640c391c0e19 69 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 63 4.1E-23 T 25-04-2017 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 A4U88_RS10185 85158e60ea68e73d77893ce225adbd33 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 27 71 5.2E-11 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS10185 85158e60ea68e73d77893ce225adbd33 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 2.7E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS10185 85158e60ea68e73d77893ce225adbd33 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 2.7E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS10185 85158e60ea68e73d77893ce225adbd33 221 Gene3D G3DSA:1.10.357.10 9 210 1.2E-50 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS10185 85158e60ea68e73d77893ce225adbd33 221 SUPERFAMILY SSF46689 19 84 5.34E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 Gene3D G3DSA:3.90.1150.10 703 745 5.1E-32 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 Gene3D G3DSA:3.90.1150.10 393 451 5.1E-32 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 Gene3D G3DSA:3.90.1150.10 793 847 5.1E-32 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 Gene3D G3DSA:3.40.50.720 148 262 9.6E-6 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 SUPERFAMILY SSF53383 795 848 4.62E-112 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 SUPERFAMILY SSF53383 401 753 4.62E-112 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 Pfam PF00202 Aminotransferase class-III 418 843 9.0E-92 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 SUPERFAMILY SSF51735 141 264 4.78E-5 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 613 650 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS05345 1ac90dd48a41f6c486b4703ef2624f77 853 Gene3D G3DSA:3.40.640.10 454 698 6.6E-76 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS23760 d3eada7be7fab998ba51d93d1405a4fb 367 SUPERFAMILY SSF53756 2 363 2.48E-59 T 25-04-2017 A4U88_RS23760 d3eada7be7fab998ba51d93d1405a4fb 367 Pfam PF00534 Glycosyl transferases group 1 198 341 3.7E-26 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS23760 d3eada7be7fab998ba51d93d1405a4fb 367 Gene3D G3DSA:3.40.50.2000 196 345 3.9E-13 T 25-04-2017 A4U88_RS23760 d3eada7be7fab998ba51d93d1405a4fb 367 Pfam PF13439 Glycosyltransferase Family 4 13 184 2.0E-17 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 SUPERFAMILY SSF55890 324 376 9.02E-6 T 25-04-2017 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Gene3D G3DSA:3.30.565.10 396 529 1.5E-25 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Gene3D G3DSA:3.30.450.20 213 311 7.5E-11 T 25-04-2017 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Gene3D G3DSA:1.10.287.130 312 378 4.1E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 SMART SM00387 420 530 1.7E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 SUPERFAMILY SSF103190 37 165 3.06E-30 T 25-04-2017 IPR029151 Periplasmic sensor domain-like A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 422 529 1.5E-14 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 SUPERFAMILY SSF55874 378 530 4.45E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 529 1.1E-7 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 461 475 1.1E-7 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 489 1.1E-7 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 PRINTS PR00344 Bacterial sensor protein C-terminal signature 492 510 1.1E-7 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Pfam PF17203 Single cache domain 3 34 163 1.1E-19 T 25-04-2017 IPR033463 Single cache domain 3 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 SUPERFAMILY SSF55785 212 313 3.14E-8 T 25-04-2017 IPR000014 PAS domain A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Gene3D G3DSA:3.30.450.20 31 168 1.5E-39 T 25-04-2017 A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 SMART SM00091 212 281 2.1E-4 T 25-04-2017 IPR000014 PAS domain A4U88_RS18975 216758d9a62448f93f3832c62e4d0863 530 Pfam PF13188 PAS domain 215 268 2.3E-4 T 25-04-2017 IPR000014 PAS domain A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 3.7E-96 T 25-04-2017 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PIRSF PIRSF002764 1 219 2.1E-85 T 25-04-2017 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 Pfam PF03379 CcmB protein 3 216 4.6E-92 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 5.7E-73 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 5.7E-73 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 5.7E-73 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 5.7E-73 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 5.7E-73 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17270 86edec4bbea4f4f946308938250fa8ab 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 5.7E-73 T 25-04-2017 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.30.470.20 746 933 2.4E-81 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.30.470.20 200 399 5.9E-75 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.4E-64 T 25-04-2017 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SMART SM00851 956 1042 4.9E-30 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.30.1490.20 687 745 1.6E-25 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SUPERFAMILY SSF52440 1 127 5.61E-50 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SUPERFAMILY SSF52335 938 1071 1.7E-34 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 25-04-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.40.50.20 3 108 1.2E-46 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SMART SM01096 424 547 7.4E-75 T 25-04-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:1.10.1030.10 400 538 2.2E-51 T 25-04-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.40.50.1380 939 1072 1.0E-39 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SUPERFAMILY SSF52440 557 676 8.06E-50 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.40.50.20 539 663 7.6E-63 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Gene3D G3DSA:3.30.1490.20 141 199 1.8E-28 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SUPERFAMILY SSF48108 396 554 9.81E-53 T 25-04-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Pfam PF02142 MGS-like domain 957 1041 1.1E-17 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.369 T 25-04-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.206 T 25-04-2017 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.0E-76 T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 3.9E-38 T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SUPERFAMILY SSF56059 674 934 3.89E-105 T 25-04-2017 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 25-04-2017 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 7.9E-40 T 25-04-2017 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 A4U88_RS03130 b372e45fa23980e7494693fbd9289723 1074 SUPERFAMILY SSF56059 128 401 3.18E-109 T 25-04-2017 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 SUPERFAMILY SSF100950 75 230 2.62E-27 T 25-04-2017 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 Pfam PF00455 DeoR C terminal sensor domain 75 230 2.3E-42 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 SMART SM01134 71 232 5.5E-60 T 25-04-2017 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 Gene3D G3DSA:3.40.50.1360 76 212 9.0E-15 T 25-04-2017 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 SMART SM00420 6 58 1.7E-15 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 6.0E-17 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 SUPERFAMILY SSF46785 4 61 4.92E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 8.0E-10 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 8.0E-10 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11040 270ba1deb1304aa559c0f88e40abf9f8 251 Gene3D G3DSA:1.10.10.10 1 55 6.6E-8 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15645 686b916c1dca09b18f059f04f5d6cb90 246 SUPERFAMILY SSF52540 9 205 1.54E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15645 686b916c1dca09b18f059f04f5d6cb90 246 Pfam PF00005 ABC transporter 26 160 9.8E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS15645 686b916c1dca09b18f059f04f5d6cb90 246 SMART SM00382 34 211 9.1E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS15645 686b916c1dca09b18f059f04f5d6cb90 246 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS15645 686b916c1dca09b18f059f04f5d6cb90 246 Gene3D G3DSA:3.40.50.300 8 205 8.5E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 93 2.0E-37 T 25-04-2017 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 3 126 2.7E-53 T 25-04-2017 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 SUPERFAMILY SSF56214 3 125 6.67E-30 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 122 3.2E-23 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 4 126 2.5E-36 T 25-04-2017 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.422 T 25-04-2017 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 A4U88_RS18615 ea158048f1cf5f018e65c64024c777c2 126 Gene3D G3DSA:3.90.470.20 1 125 1.1E-41 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 Gene3D G3DSA:2.60.120.10 8 85 1.5E-9 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 206 247 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 Gene3D G3DSA:1.10.10.60 148 205 3.5E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 SUPERFAMILY SSF46689 206 253 3.58E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 Pfam PF07883 Cupin domain 22 85 8.0E-7 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 SMART SM00342 169 251 1.5E-28 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 220 235 4.9E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 235 251 4.9E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 SUPERFAMILY SSF51182 10 176 2.22E-18 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 Gene3D G3DSA:1.10.10.60 206 250 3.6E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09050 48959270483ff2a33a11575e11f94c02 266 Pfam PF12833 Helix-turn-helix domain 176 252 1.6E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS08910 b5e34a0ddc5021f749f93e8042697611 611 Pfam PF13569 Domain of unknown function (DUF4132) 274 414 2.5E-21 T 25-04-2017 IPR025406 Domain of unknown function DUF4132 A4U88_RS12680 d992d5bac8bcfbdc82ef0491b4e8596d 167 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 25-04-2017 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 A4U88_RS12680 d992d5bac8bcfbdc82ef0491b4e8596d 167 SUPERFAMILY SSF52833 4 164 5.74E-42 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS12680 d992d5bac8bcfbdc82ef0491b4e8596d 167 Gene3D G3DSA:3.40.30.10 4 167 6.9E-45 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS12680 d992d5bac8bcfbdc82ef0491b4e8596d 167 Pfam PF08534 Redoxin 20 163 2.5E-27 T 25-04-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 A4U88_RS12680 d992d5bac8bcfbdc82ef0491b4e8596d 167 Hamap MF_00269 Probable thiol peroxidase [tpx]. 4 167 39.923 T 25-04-2017 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 A4U88_RS00225 e856540df0b6fbb70b41d98b1a95a582 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 112 193 9.0E-8 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS00225 e856540df0b6fbb70b41d98b1a95a582 201 SUPERFAMILY SSF52833 1 100 7.33E-18 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS00225 e856540df0b6fbb70b41d98b1a95a582 201 Gene3D G3DSA:1.20.1050.10 89 199 1.3E-16 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS00225 e856540df0b6fbb70b41d98b1a95a582 201 Gene3D G3DSA:3.40.30.10 1 88 3.0E-20 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS00225 e856540df0b6fbb70b41d98b1a95a582 201 SUPERFAMILY SSF47616 76 200 4.46E-18 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS00225 e856540df0b6fbb70b41d98b1a95a582 201 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 75 4.7E-18 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS07870 df83993a034bdb7bf84fb1251847a6c2 461 Pfam PF00474 Sodium:solute symporter family 32 412 6.1E-37 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS07870 df83993a034bdb7bf84fb1251847a6c2 461 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 394 414 - T 25-04-2017 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS12055 bc76739016c64a9720335637cc89526f 66 Pfam PF00403 Heavy-metal-associated domain 4 60 8.6E-7 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS12055 bc76739016c64a9720335637cc89526f 66 Gene3D G3DSA:3.30.70.100 2 61 4.5E-14 T 25-04-2017 A4U88_RS12055 bc76739016c64a9720335637cc89526f 66 SUPERFAMILY SSF55008 2 62 7.07E-12 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS09605 70f89cb68cced76d9a54c80ee2767cb5 410 Gene3D G3DSA:1.20.1250.20 10 197 3.5E-27 T 25-04-2017 A4U88_RS09605 70f89cb68cced76d9a54c80ee2767cb5 410 Pfam PF07690 Major Facilitator Superfamily 19 290 5.5E-31 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS09605 70f89cb68cced76d9a54c80ee2767cb5 410 SUPERFAMILY SSF103473 7 406 3.92E-52 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS09605 70f89cb68cced76d9a54c80ee2767cb5 410 Gene3D G3DSA:1.20.1250.20 225 402 1.1E-21 T 25-04-2017 A4U88_RS13510 427cb53aba34b7844fead41e8d9ac031 233 Pfam PF00814 Glycoprotease family 30 153 1.7E-30 T 25-04-2017 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS13510 427cb53aba34b7844fead41e8d9ac031 233 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 7.0E-71 T 25-04-2017 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 A4U88_RS13510 427cb53aba34b7844fead41e8d9ac031 233 Gene3D G3DSA:3.30.420.40 4 133 6.5E-46 T 25-04-2017 A4U88_RS13510 427cb53aba34b7844fead41e8d9ac031 233 SUPERFAMILY SSF53067 5 107 6.04E-31 T 25-04-2017 A4U88_RS13510 427cb53aba34b7844fead41e8d9ac031 233 SUPERFAMILY SSF53067 110 219 3.37E-29 T 25-04-2017 A4U88_RS02555 a81f80a3be1283bf449e0f8083fb9e0f 747 Gene3D G3DSA:2.170.130.10 21 159 7.8E-15 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS02555 a81f80a3be1283bf449e0f8083fb9e0f 747 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 730 747 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS02555 a81f80a3be1283bf449e0f8083fb9e0f 747 Pfam PF00593 TonB dependent receptor 487 745 6.6E-30 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS02555 a81f80a3be1283bf449e0f8083fb9e0f 747 Gene3D G3DSA:2.40.170.20 160 747 5.4E-85 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS02555 a81f80a3be1283bf449e0f8083fb9e0f 747 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 146 3.3E-12 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS02555 a81f80a3be1283bf449e0f8083fb9e0f 747 SUPERFAMILY SSF56935 21 747 4.76E-93 T 25-04-2017 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 336 406 2.9E-6 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Gene3D G3DSA:3.40.50.300 245 332 6.2E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Gene3D G3DSA:3.40.50.300 3 110 6.2E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Gene3D G3DSA:1.10.8.10 213 243 5.9E-34 T 25-04-2017 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Gene3D G3DSA:1.10.8.10 111 177 5.9E-34 T 25-04-2017 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Pfam PF07724 AAA domain (Cdc48 subfamily) 188 330 2.2E-41 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 444 5.8E-231 T 25-04-2017 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Gene3D G3DSA:1.10.8.60 336 444 1.3E-35 T 25-04-2017 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 444 43.567 T 25-04-2017 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 SUPERFAMILY SSF52540 3 442 1.01E-95 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 SMART SM01086 336 435 1.3E-23 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 136 2.9E-7 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS23550 b9a81f85ae378f005d9c0b02b7d75c10 444 SMART SM00382 49 333 2.2E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 PIRSF PIRSF003107 7 226 3.9E-68 T 25-04-2017 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 1.9E-73 T 25-04-2017 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 Gene3D G3DSA:1.20.58.220 9 114 3.5E-37 T 25-04-2017 A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 Pfam PF01895 PhoU domain 26 111 6.1E-22 T 25-04-2017 IPR026022 PhoU domain A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 Pfam PF01895 PhoU domain 128 212 5.6E-17 T 25-04-2017 IPR026022 PhoU domain A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 SUPERFAMILY SSF109755 13 228 5.23E-70 T 25-04-2017 A4U88_RS24170 2a5423895470384a3f1a6f726520815c 244 Gene3D G3DSA:1.20.58.220 127 231 7.8E-31 T 25-04-2017 A4U88_RS01875 97c41b47561e920c8f97a50e8c6eafa9 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.867 T 25-04-2017 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01875 97c41b47561e920c8f97a50e8c6eafa9 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 5.2E-45 T 25-04-2017 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01875 97c41b47561e920c8f97a50e8c6eafa9 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 6.2E-38 T 25-04-2017 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01875 97c41b47561e920c8f97a50e8c6eafa9 103 SUPERFAMILY SSF141091 1 102 6.41E-37 T 25-04-2017 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01875 97c41b47561e920c8f97a50e8c6eafa9 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 25-04-2017 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03400 2d2f1c8b4fd767781603561583913c74 171 Pfam PF05258 Protein of unknown function (DUF721) 26 98 1.0E-14 T 25-04-2017 IPR007922 Protein of unknown function DUF721/UPF0232 A4U88_RS16440 3b4380fe92d8cea481cee5a5142f4f2e 114 Pfam PF13989 YejG-like protein 4 108 1.1E-54 T 25-04-2017 IPR020489 Uncharacterised protein family YejG A4U88_RS16440 3b4380fe92d8cea481cee5a5142f4f2e 114 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 114 8.0E-47 T 25-04-2017 IPR020489 Uncharacterised protein family YejG A4U88_RS14205 565b6c1dbf33fa994e06bf5bcf8753b7 75 SUPERFAMILY SSF140376 2 75 7.19E-29 T 25-04-2017 A4U88_RS14205 565b6c1dbf33fa994e06bf5bcf8753b7 75 Pfam PF06150 ChaB 9 75 5.0E-27 T 25-04-2017 IPR009317 ChaB A4U88_RS11445 cb82230f0982b922130bcafd0bf7bd2a 143 Pfam PF08786 Domain of unknown function (DUF1795) 11 139 1.4E-34 T 25-04-2017 IPR014894 Protein DcrB A4U88_RS11445 cb82230f0982b922130bcafd0bf7bd2a 143 SUPERFAMILY SSF55724 5 141 2.72E-33 T 25-04-2017 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 A4U88_RS11445 cb82230f0982b922130bcafd0bf7bd2a 143 Gene3D G3DSA:3.40.1000.10 5 142 1.8E-41 T 25-04-2017 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 A4U88_RS16985 5068ac946efcdd4e6b920df52bdf15ab 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 1.5E-19 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS16985 5068ac946efcdd4e6b920df52bdf15ab 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 219 1.9E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16985 5068ac946efcdd4e6b920df52bdf15ab 228 Gene3D G3DSA:1.10.3720.10 6 219 9.2E-41 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16985 5068ac946efcdd4e6b920df52bdf15ab 228 SUPERFAMILY SSF161098 7 205 3.53E-38 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22390 162040e7ef8aa4cdb3f538dbc1337fb0 119 Gene3D G3DSA:3.40.1260.10 1 119 3.0E-50 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS22390 162040e7ef8aa4cdb3f538dbc1337fb0 119 SUPERFAMILY SSF75169 1 119 1.7E-38 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS22390 162040e7ef8aa4cdb3f538dbc1337fb0 119 Pfam PF02635 DsrE/DsrF-like family 2 119 8.1E-26 T 25-04-2017 IPR003787 Sulphur relay, DsrE/F-like protein A4U88_RS22390 162040e7ef8aa4cdb3f538dbc1337fb0 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 4 119 8.3E-47 T 25-04-2017 IPR017462 Sulphur relay, TusC/DsrF A4U88_RS22390 162040e7ef8aa4cdb3f538dbc1337fb0 119 Hamap MF_00389 Protein TusC [tusC]. 1 119 37.066 T 25-04-2017 IPR017462 Sulphur relay, TusC/DsrF A4U88_RS23485 0b4e4c233735c8f4b31a8bfc1caaf7b6 257 Pfam PF00696 Amino acid kinase family 4 234 2.5E-39 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23485 0b4e4c233735c8f4b31a8bfc1caaf7b6 257 SUPERFAMILY SSF53633 2 255 2.88E-59 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23485 0b4e4c233735c8f4b31a8bfc1caaf7b6 257 Hamap MF_00082_B Acetylglutamate kinase [argB]. 1 257 25.512 T 25-04-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS23485 0b4e4c233735c8f4b31a8bfc1caaf7b6 257 Gene3D G3DSA:3.40.1160.10 2 256 6.8E-78 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23485 0b4e4c233735c8f4b31a8bfc1caaf7b6 257 PIRSF PIRSF000728 1 257 3.7E-70 T 25-04-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS23485 0b4e4c233735c8f4b31a8bfc1caaf7b6 257 TIGRFAM TIGR00761 argB: acetylglutamate kinase 4 233 5.2E-74 T 25-04-2017 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS10850 7b1002ebdb8bd60ac2f4a2820310ee53 287 SUPERFAMILY SSF111369 42 220 1.01E-25 T 25-04-2017 A4U88_RS10850 7b1002ebdb8bd60ac2f4a2820310ee53 287 Gene3D G3DSA:2.40.50.100 45 77 7.0E-16 T 25-04-2017 A4U88_RS10850 7b1002ebdb8bd60ac2f4a2820310ee53 287 Gene3D G3DSA:2.40.50.100 151 184 7.0E-16 T 25-04-2017 A4U88_RS10850 7b1002ebdb8bd60ac2f4a2820310ee53 287 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 43 230 3.9E-15 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS10850 7b1002ebdb8bd60ac2f4a2820310ee53 287 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 230 6.5E-38 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS03580 4965399b924036f23193c64ee11a1c51 119 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 118 2.7E-35 T 25-04-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 A4U88_RS03580 4965399b924036f23193c64ee11a1c51 119 SUPERFAMILY SSF55620 3 118 2.11E-41 T 25-04-2017 A4U88_RS03580 4965399b924036f23193c64ee11a1c51 119 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 2.5E-33 T 25-04-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 A4U88_RS03580 4965399b924036f23193c64ee11a1c51 119 PIRSF PIRSF006113 1 119 3.1E-55 T 25-04-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 A4U88_RS03580 4965399b924036f23193c64ee11a1c51 119 Gene3D G3DSA:3.30.479.10 3 118 3.1E-41 T 25-04-2017 A4U88_RS03580 4965399b924036f23193c64ee11a1c51 119 TIGRFAM TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein 3 118 1.5E-37 T 25-04-2017 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 25-04-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 SMART SM00411 1 90 1.0E-43 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.9E-32 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 SUPERFAMILY SSF47729 1 90 1.91E-32 T 25-04-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.0E-19 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.0E-19 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.0E-19 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS01255 a5c68ed8164338dd40cb124de9108277 90 Gene3D G3DSA:4.10.520.10 1 90 9.4E-37 T 25-04-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 SUPERFAMILY SSF55205 4 424 6.02E-147 T 25-04-2017 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.481 T 25-04-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 Gene3D G3DSA:3.65.10.10 239 423 1.4E-73 T 25-04-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 PIRSF PIRSF000505 4 427 4.4E-155 T 25-04-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 421 4.8E-151 T 25-04-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 25-04-2017 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 25-04-2017 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 424 1.3E-142 T 25-04-2017 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 A4U88_RS08315 944af5cc3bfc9c8f7466430336ff0ede 428 Gene3D G3DSA:3.65.10.10 23 238 2.3E-68 T 25-04-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 A4U88_RS15235 438e945a5ee81dc660b36b2cab7fbcb6 139 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 136 2.9E-10 T 25-04-2017 IPR028973 PhnB-like A4U88_RS15235 438e945a5ee81dc660b36b2cab7fbcb6 139 Gene3D G3DSA:3.10.180.10 7 139 9.3E-45 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS15235 438e945a5ee81dc660b36b2cab7fbcb6 139 SUPERFAMILY SSF54593 2 138 1.53E-34 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS02710 ad5af8625b0ef8855a592ff1a753704f 456 Pfam PF07690 Major Facilitator Superfamily 38 387 1.2E-46 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS02710 ad5af8625b0ef8855a592ff1a753704f 456 Gene3D G3DSA:1.20.1250.20 29 229 1.1E-45 T 25-04-2017 A4U88_RS02710 ad5af8625b0ef8855a592ff1a753704f 456 Gene3D G3DSA:1.20.1250.20 258 446 1.4E-22 T 25-04-2017 A4U88_RS02710 ad5af8625b0ef8855a592ff1a753704f 456 SUPERFAMILY SSF103473 20 448 2.49E-84 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS02710 ad5af8625b0ef8855a592ff1a753704f 456 TIGRFAM TIGR02332 HpaX: 4-hydroxyphenylacetate permease 26 437 8.7E-253 T 25-04-2017 IPR012707 4-hydroxyphenylacetate permease GO:1900754|GO:1901241 A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 SUPERFAMILY SSF46785 5 113 8.17E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 SUPERFAMILY SSF53850 93 289 5.61E-33 T 25-04-2017 A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 4.4E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 Gene3D G3DSA:3.40.190.10 173 252 4.2E-15 T 25-04-2017 A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 Gene3D G3DSA:3.40.190.10 95 172 6.4E-25 T 25-04-2017 A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 Pfam PF03466 LysR substrate binding domain 91 288 2.7E-33 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS14940 392b6c14a9cc3974b772e1e0eb22c7c4 291 Gene3D G3DSA:1.10.10.10 7 90 3.6E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 Gene3D G3DSA:3.30.420.40 374 433 9.6E-17 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 Gene3D G3DSA:3.30.420.40 218 241 9.6E-17 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 Pfam PF00012 Hsp70 protein 130 228 1.6E-9 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 Pfam PF00012 Hsp70 protein 330 422 3.8E-6 T 25-04-2017 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 SUPERFAMILY SSF53067 207 276 1.91E-30 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 SUPERFAMILY SSF53067 328 447 1.91E-30 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 SUPERFAMILY SSF53067 85 204 3.89E-27 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 SUPERFAMILY SSF53067 1 44 3.89E-27 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 Gene3D G3DSA:3.30.420.40 2 43 4.0E-29 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 Gene3D G3DSA:3.30.420.40 85 217 4.0E-29 T 25-04-2017 A4U88_RS18065 b428c5c03c6143f94fcb3f20f810b78b 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS21575 74c9196a74cc49cd77d2460f49df17cf 560 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 381 557 4.7E-20 T 25-04-2017 IPR021797 Virulence factor membrane-bound polymerase, C-terminal A4U88_RS21575 74c9196a74cc49cd77d2460f49df17cf 560 Pfam PF04932 O-Antigen ligase 207 353 1.1E-15 T 25-04-2017 IPR007016 O-antigen ligase-related A4U88_RS21575 74c9196a74cc49cd77d2460f49df17cf 560 Pfam PF15864 Protein glycosylation ligase 163 188 6.6E-9 T 25-04-2017 IPR031726 Protein glycosylation ligase domain A4U88_RS00895 62dc11f924788d3dd3f3ec54538fd47a 439 SUPERFAMILY SSF53850 28 427 6.73E-75 T 25-04-2017 A4U88_RS00895 62dc11f924788d3dd3f3ec54538fd47a 439 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 25-04-2017 IPR006061 Solute-binding family 1, conserved site GO:0005215|GO:0006810 A4U88_RS00895 62dc11f924788d3dd3f3ec54538fd47a 439 Gene3D G3DSA:3.40.190.10 147 347 4.1E-39 T 25-04-2017 A4U88_RS00895 62dc11f924788d3dd3f3ec54538fd47a 439 Pfam PF13416 Bacterial extracellular solute-binding protein 46 369 6.6E-42 T 25-04-2017 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 4 483 3.6E-217 T 25-04-2017 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 SUPERFAMILY SSF53720 2 476 9.42E-166 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 Gene3D G3DSA:3.40.309.10 258 445 6.2E-69 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 Gene3D G3DSA:3.40.605.10 2 257 7.6E-97 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS02685 16a4f42276cef73c802739e7e900e0cf 484 Pfam PF00171 Aldehyde dehydrogenase family 16 470 8.3E-172 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS12010 db6e9f75b48f6851652bc38963149b35 485 PIRSF PIRSF006060 6 476 7.4E-65 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS12010 db6e9f75b48f6851652bc38963149b35 485 Pfam PF00324 Amino acid permease 31 471 1.5E-98 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 Pfam PF07690 Major Facilitator Superfamily 18 412 1.7E-54 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 108 128 5.8E-6 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 17 41 5.8E-6 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 204 222 5.8E-6 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 5.8E-6 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 PRINTS PR01036 Tetracycline resistance protein TetB signature 138 162 5.8E-6 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 Gene3D G3DSA:1.20.1250.20 475 500 8.8E-24 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 Gene3D G3DSA:1.20.1250.20 265 423 8.8E-24 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 Gene3D G3DSA:1.20.1250.20 13 193 1.3E-29 T 25-04-2017 A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 SUPERFAMILY SSF103473 250 422 6.8E-74 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 SUPERFAMILY SSF103473 474 499 6.8E-74 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 SUPERFAMILY SSF103473 8 195 6.8E-74 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19035 0deba922752b3b5004840ce6d9d096b0 512 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 495 1.7E-210 T 25-04-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 A4U88_RS21395 74f162b799941a7092ff396862bf3458 179 Pfam PF03968 OstA-like protein 38 148 7.4E-30 T 25-04-2017 IPR005653 Organic solvent tolerance-like, N-terminal A4U88_RS21395 74f162b799941a7092ff396862bf3458 179 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 27 166 3.5E-50 T 25-04-2017 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 A4U88_RS21395 74f162b799941a7092ff396862bf3458 179 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 7 167 25.733 T 25-04-2017 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 A4U88_RS21395 74f162b799941a7092ff396862bf3458 179 Gene3D G3DSA:2.60.450.10 28 163 4.9E-41 T 25-04-2017 A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 Gene3D G3DSA:1.10.10.10 11 86 1.3E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 Gene3D G3DSA:3.40.190.10 99 182 7.2E-24 T 25-04-2017 A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.3E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 Gene3D G3DSA:3.40.190.10 183 266 5.5E-21 T 25-04-2017 A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 SUPERFAMILY SSF46785 13 117 6.92E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 Pfam PF03466 LysR substrate binding domain 94 298 3.3E-42 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS15800 63d3329ce104f1e766be532f98aaca36 311 SUPERFAMILY SSF53850 95 305 7.96E-44 T 25-04-2017 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 212 240 3.4E-84 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 299 316 3.4E-84 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 129 158 3.4E-84 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 167 196 3.4E-84 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 245 274 3.4E-84 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 PRINTS PR00142 RecA protein signature 95 124 3.4E-84 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 Pfam PF00154 recA bacterial DNA recombination protein 9 270 1.3E-142 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 Hamap MF_00268 Protein RecA [recA]. 7 331 50.79 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 2.6E-171 T 25-04-2017 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 Gene3D G3DSA:3.40.50.300 28 270 1.4E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 SUPERFAMILY SSF54752 272 326 2.22E-20 T 25-04-2017 IPR023400 DNA recombination and repair protein RecA, C-terminal A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 SMART SM00382 59 230 1.1E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 Gene3D G3DSA:3.30.250.10 272 327 1.8E-27 T 25-04-2017 IPR023400 DNA recombination and repair protein RecA, C-terminal A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 SUPERFAMILY SSF52540 5 269 2.6E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03745 2768a45bc74c8d212c637b184080c8d1 354 ProSitePatterns PS00321 recA signature. 215 223 - T 25-04-2017 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 Pfam PF00825 Ribonuclease P 6 111 1.5E-32 T 25-04-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.66 T 25-04-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 105 6.0E-44 T 25-04-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 Gene3D G3DSA:3.30.230.10 5 115 3.1E-34 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 SUPERFAMILY SSF54211 5 114 1.95E-31 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 114 7.3E-37 T 25-04-2017 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 A4U88_RS24240 7570d081d49d4b8103b05b99b2c0b7e6 119 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 56 70 - T 25-04-2017 IPR020539 Ribonuclease P, conserved site GO:0004526 A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1072 1106 5.3E-19 T 25-04-2017 IPR021968 Polyribonucleotide phosphorylase C-terminal A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 SUPERFAMILY SSF50249 40 124 1.31E-20 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 Hamap MF_00970 Ribonuclease E [rne]. 1 1095 38.97 T 25-04-2017 IPR028878 Ribonuclease E GO:0006396|GO:0008995 A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 Gene3D G3DSA:2.40.50.140 31 124 2.6E-36 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 4.8E-170 T 25-04-2017 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 Pfam PF10150 Ribonuclease E/G family 121 391 4.5E-92 T 25-04-2017 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 SMART SM00316 37 119 2.8E-12 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS09165 7113d4233baacccc7d7c7b27e741d7c9 1110 Pfam PF00575 S1 RNA binding domain 36 118 3.1E-16 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS07130 8fd3bf3a729862ea1f35671f635810f3 474 SUPERFAMILY SSF103473 205 466 3.79E-18 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS07130 8fd3bf3a729862ea1f35671f635810f3 474 Gene3D G3DSA:1.20.1250.20 12 202 1.8E-27 T 25-04-2017 A4U88_RS07130 8fd3bf3a729862ea1f35671f635810f3 474 Gene3D G3DSA:1.20.1250.20 268 472 1.5E-12 T 25-04-2017 A4U88_RS07130 8fd3bf3a729862ea1f35671f635810f3 474 SUPERFAMILY SSF103473 9 197 7.98E-42 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS07130 8fd3bf3a729862ea1f35671f635810f3 474 Pfam PF07690 Major Facilitator Superfamily 18 418 2.3E-39 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 Pfam PF12833 Helix-turn-helix domain 175 253 2.7E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 Pfam PF02311 AraC-like ligand binding domain 19 120 1.1E-11 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 Gene3D G3DSA:2.60.120.10 29 80 1.8E-10 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 SMART SM00342 169 251 1.2E-14 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 Gene3D G3DSA:1.10.10.60 170 205 5.9E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 SUPERFAMILY SSF46689 205 253 3.58E-7 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 SUPERFAMILY SSF51182 30 182 1.33E-15 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS05240 728b77b84e117ed64d0950000d8dab0b 255 Gene3D G3DSA:1.10.10.60 206 253 6.1E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05670 2d3908ed59f6701612152d7b1fb07f45 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05670 2d3908ed59f6701612152d7b1fb07f45 241 Gene3D G3DSA:3.40.50.300 1 236 2.7E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05670 2d3908ed59f6701612152d7b1fb07f45 241 Pfam PF00005 ABC transporter 18 165 1.1E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS05670 2d3908ed59f6701612152d7b1fb07f45 241 SUPERFAMILY SSF52540 1 235 1.05E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05670 2d3908ed59f6701612152d7b1fb07f45 241 SMART SM00382 26 213 1.1E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05670 2d3908ed59f6701612152d7b1fb07f45 241 PIRSF PIRSF039085 1 241 4.9E-104 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS16765 5a1160a08addb1eea23f250e30db89d6 343 SUPERFAMILY SSF51735 146 298 1.02E-29 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16765 5a1160a08addb1eea23f250e30db89d6 343 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 139 1.1E-26 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS16765 5a1160a08addb1eea23f250e30db89d6 343 Pfam PF00107 Zinc-binding dehydrogenase 180 304 7.2E-23 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS16765 5a1160a08addb1eea23f250e30db89d6 343 Gene3D G3DSA:3.40.50.720 172 290 2.9E-30 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16765 5a1160a08addb1eea23f250e30db89d6 343 Gene3D G3DSA:3.90.180.10 4 171 9.1E-36 T 25-04-2017 IPR011032 GroES-like A4U88_RS16765 5a1160a08addb1eea23f250e30db89d6 343 SUPERFAMILY SSF50129 7 176 3.2E-36 T 25-04-2017 IPR011032 GroES-like A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 6.3E-51 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 25-04-2017 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Gene3D G3DSA:3.90.1170.30 338 433 6.8E-38 T 25-04-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 SUPERFAMILY SSF54680 337 438 2.88E-33 T 25-04-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Gene3D G3DSA:1.20.970.10 2 68 2.9E-29 T 25-04-2017 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 9.4E-230 T 25-04-2017 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 1 439 53.935 T 25-04-2017 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 SUPERFAMILY SSF52418 75 334 1.7E-88 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 2.4E-18 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 SMART SM00941 350 424 5.3E-34 T 25-04-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 2.2E-167 T 25-04-2017 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 9.0E-26 T 25-04-2017 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 Gene3D G3DSA:3.40.1030.10 75 337 1.8E-110 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 PIRSF PIRSF000478 1 439 5.7E-155 T 25-04-2017 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02885 76c690421c833fd8377ba931b40b5173 440 SUPERFAMILY SSF47648 3 70 5.49E-21 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 SMART SM00843 1167 1232 4.8E-41 T 25-04-2017 IPR018541 FtsK gamma domain A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 SUPERFAMILY SSF52540 825 1137 1.3E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 9.6E-44 T 25-04-2017 IPR025199 DNA translocase FtsK, 4TM region A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 SUPERFAMILY SSF46785 1167 1231 4.08E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 Pfam PF01580 FtsK/SpoIIIE family 851 1064 5.0E-72 T 25-04-2017 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 Pfam PF09397 Ftsk gamma domain 1169 1229 4.0E-28 T 25-04-2017 IPR018541 FtsK gamma domain A4U88_RS08255 99fdfaec8c135a8d6453599156209420 1234 Gene3D G3DSA:3.40.50.300 825 1131 8.1E-97 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16620 ab3e220c5753e0405db284d5b156dfa6 299 SMART SM00849 61 249 5.1E-15 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS16620 ab3e220c5753e0405db284d5b156dfa6 299 Pfam PF00753 Metallo-beta-lactamase superfamily 63 187 4.0E-15 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS16620 ab3e220c5753e0405db284d5b156dfa6 299 Gene3D G3DSA:3.60.15.10 31 248 1.1E-35 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS16620 ab3e220c5753e0405db284d5b156dfa6 299 SUPERFAMILY SSF56281 41 249 2.88E-35 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS13340 623c2cd7d873e10b96b915d88ae2f0c5 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 2 129 36.358 T 25-04-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS13340 623c2cd7d873e10b96b915d88ae2f0c5 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 13 135 3.5E-58 T 25-04-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS13340 623c2cd7d873e10b96b915d88ae2f0c5 137 SUPERFAMILY SSF51316 11 131 1.41E-55 T 25-04-2017 IPR011057 Mss4-like A4U88_RS13340 623c2cd7d873e10b96b915d88ae2f0c5 137 Pfam PF01641 SelR domain 13 127 6.4E-52 T 25-04-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS13340 623c2cd7d873e10b96b915d88ae2f0c5 137 Gene3D G3DSA:2.170.150.20 12 131 1.3E-57 T 25-04-2017 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS21345 44bc005334d49b0bd5a9c4d0437f9029 84 PIRSF PIRSF003113 1 83 8.6E-24 T 25-04-2017 IPR002634 BolA protein A4U88_RS21345 44bc005334d49b0bd5a9c4d0437f9029 84 Pfam PF01722 BolA-like protein 19 74 1.8E-15 T 25-04-2017 IPR002634 BolA protein A4U88_RS21345 44bc005334d49b0bd5a9c4d0437f9029 84 Gene3D G3DSA:3.30.300.90 1 80 3.3E-29 T 25-04-2017 IPR002634 BolA protein A4U88_RS21345 44bc005334d49b0bd5a9c4d0437f9029 84 SUPERFAMILY SSF82657 1 82 2.35E-30 T 25-04-2017 IPR002634 BolA protein A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 SUPERFAMILY SSF82861 549 632 2.35E-10 T 25-04-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 Gene3D G3DSA:2.30.30.60 649 697 7.8E-16 T 25-04-2017 A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 SUPERFAMILY SSF82689 707 801 3.53E-13 T 25-04-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 Pfam PF12607 Protein of unknown function (DUF3772) 141 202 4.1E-19 T 25-04-2017 IPR022249 Domain of unknown function DUF3772 A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 Gene3D G3DSA:3.30.70.100 718 786 4.6E-9 T 25-04-2017 A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 SUPERFAMILY SSF50182 634 698 1.96E-15 T 25-04-2017 IPR010920 LSM domain A4U88_RS12215 7fec656307792fdbfca3b617ae70005a 815 Pfam PF00924 Mechanosensitive ion channel 592 789 7.5E-43 T 25-04-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 ProSitePatterns PS00786 5'-nucleotidase signature 2. 109 120 - T 25-04-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 SUPERFAMILY SSF56300 27 360 9.38E-97 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 PRINTS PR01607 Apyrase family signature 207 224 1.2E-59 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 PRINTS PR01607 Apyrase family signature 238 261 1.2E-59 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 PRINTS PR01607 Apyrase family signature 417 440 1.2E-59 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 PRINTS PR01607 Apyrase family signature 283 303 1.2E-59 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 PRINTS PR01607 Apyrase family signature 484 503 1.2E-59 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 PRINTS PR01607 Apyrase family signature 32 50 1.2E-59 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 Pfam PF00149 Calcineurin-like phosphoesterase 35 254 1.2E-17 T 25-04-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 ProSitePatterns PS00785 5'-nucleotidase signature 1. 34 46 - T 25-04-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 Gene3D G3DSA:3.90.780.10 363 540 5.0E-54 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 Pfam PF02872 5'-nucleotidase, C-terminal domain 363 509 3.1E-33 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 SUPERFAMILY SSF55816 363 542 6.93E-53 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05235 eb67dbff322244356bf7d640c8b6ea1f 550 Gene3D G3DSA:3.60.21.10 28 361 9.0E-98 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 11 336 3.7E-125 T 25-04-2017 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 SUPERFAMILY SSF53822 69 325 2.16E-49 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 Gene3D G3DSA:3.40.50.2300 174 337 4.8E-39 T 25-04-2017 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 59 4.6E-17 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 SMART SM00354 9 82 1.3E-33 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 Pfam PF13377 Periplasmic binding protein-like domain 187 336 2.3E-12 T 25-04-2017 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 Gene3D G3DSA:1.10.260.40 10 68 3.3E-25 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 Gene3D G3DSA:3.40.50.2300 69 173 7.3E-28 T 25-04-2017 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 SUPERFAMILY SSF47413 10 67 5.06E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS20765 ee8857a4b69d37c6c7b8d3a6c2a35116 347 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 25-04-2017 A4U88_RS03490 3d4c901d5b4442d441e84a67206f0fdb 261 SUPERFAMILY SSF53807 16 257 1.18E-54 T 25-04-2017 A4U88_RS03490 3d4c901d5b4442d441e84a67206f0fdb 261 Gene3D G3DSA:3.40.50.1980 137 257 5.7E-32 T 25-04-2017 A4U88_RS03490 3d4c901d5b4442d441e84a67206f0fdb 261 Pfam PF01497 Periplasmic binding protein 19 214 5.4E-21 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS03490 3d4c901d5b4442d441e84a67206f0fdb 261 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 2 261 48.877 T 25-04-2017 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 A4U88_RS03490 3d4c901d5b4442d441e84a67206f0fdb 261 Gene3D G3DSA:3.40.50.1980 16 133 2.0E-30 T 25-04-2017 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 SUPERFAMILY SSF46785 3 112 3.19E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 Gene3D G3DSA:3.40.190.10 91 177 1.3E-18 T 25-04-2017 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 Gene3D G3DSA:3.40.190.10 178 262 4.4E-21 T 25-04-2017 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.5E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.5E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.5E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 7.7E-24 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 Gene3D G3DSA:1.10.10.10 4 87 1.8E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 Pfam PF03466 LysR substrate binding domain 90 293 1.1E-44 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS17575 964b1c867967b22b0d4c956bfa6588c0 306 SUPERFAMILY SSF53850 91 294 2.44E-40 T 25-04-2017 A4U88_RS14700 2923c583d555b84c5513027f3313a3c3 111 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 20 101 7.2E-22 T 25-04-2017 IPR032032 Type VI secretion system (T6SS), amidase immunity protein A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 Pfam PF03772 Competence protein 205 474 5.8E-51 T 25-04-2017 IPR004477 ComEC/Rec2-related protein A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 SMART SM00849 510 691 2.2E-14 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 SUPERFAMILY SSF56281 500 744 1.97E-45 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 Pfam PF00753 Metallo-beta-lactamase superfamily 508 688 1.4E-15 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 97 720 3.6E-184 T 25-04-2017 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 Gene3D G3DSA:3.60.15.10 488 712 3.4E-31 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 226 409 1.2E-39 T 25-04-2017 IPR004477 ComEC/Rec2-related protein A4U88_RS08335 4eeccfa18f60930758da02cd82fa9adb 756 Pfam PF13567 Domain of unknown function (DUF4131) 11 174 5.4E-11 T 25-04-2017 IPR025405 Domain of unknown function DUF4131 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 SUPERFAMILY SSF81296 16 115 1.66E-18 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 SUPERFAMILY SSF51011 623 725 7.09E-34 T 25-04-2017 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Gene3D G3DSA:3.20.20.80 243 611 2.5E-92 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Gene3D G3DSA:2.60.40.1180 623 723 5.3E-35 T 25-04-2017 IPR013780 Glycosyl hydrolase, all-beta A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 1.9E-21 T 25-04-2017 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Gene3D G3DSA:2.60.40.10 14 105 4.0E-18 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Gene3D G3DSA:2.60.40.10 113 220 1.1E-41 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 3.8E-302 T 25-04-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Pfam PF00128 Alpha amylase, catalytic domain 273 341 8.5E-11 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 SMART SM00642 247 596 1.9E-7 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 8.1E-25 T 25-04-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 PIRSF PIRSF000463 6 728 5.4E-283 T 25-04-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 SUPERFAMILY SSF81296 117 223 1.07E-36 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.542 T 25-04-2017 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 A4U88_RS22850 efdbb58bbe4070563d8e43bc37206806 728 SUPERFAMILY SSF51445 230 621 5.89E-115 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 170 1.3E-41 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 SUPERFAMILY SSF52467 182 351 3.09E-46 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 Gene3D G3DSA:3.40.50.970 340 505 6.4E-50 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 Gene3D G3DSA:3.40.50.970 1 177 8.2E-52 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 SUPERFAMILY SSF52518 357 505 4.42E-49 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 505 2.2E-33 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 192 319 2.3E-32 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 Gene3D G3DSA:3.40.50.1220 185 339 1.2E-45 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS08160 8281e00295c71e374a1d8e32a33d46ea 572 SUPERFAMILY SSF52518 2 179 4.65E-44 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 Gene3D G3DSA:3.40.190.10 111 185 7.5E-9 T 25-04-2017 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.8E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.8E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.8E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 Gene3D G3DSA:1.10.10.10 7 87 1.2E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 Gene3D G3DSA:3.40.190.10 186 266 4.1E-12 T 25-04-2017 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 7.7E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 SUPERFAMILY SSF53850 94 304 9.05E-30 T 25-04-2017 A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 SUPERFAMILY SSF46785 6 112 1.86E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18775 1f9f63b0c7d3ad6c3179ccc7dd31b094 311 Pfam PF03466 LysR substrate binding domain 94 303 1.8E-28 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 SUPERFAMILY SSF54826 2 112 4.52E-32 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 3 109 2.5E-19 T 25-04-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 SUPERFAMILY SSF51604 118 317 1.17E-53 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 SMART SM00922 130 223 2.0E-21 T 25-04-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 Gene3D G3DSA:3.20.20.120 117 317 1.3E-61 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 Pfam PF13378 Enolase C-terminal domain-like 134 294 2.5E-27 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 25-04-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 A4U88_RS12675 06191ce426d60de1076e25df5300c74f 324 Gene3D G3DSA:3.30.390.10 1 101 6.1E-43 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS17725 3cf64c3e9146717b8839ddc37ac50358 312 SUPERFAMILY SSF82282 7 311 1.44E-84 T 25-04-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 A4U88_RS17725 3cf64c3e9146717b8839ddc37ac50358 312 Pfam PF02574 Homocysteine S-methyltransferase 17 309 1.9E-74 T 25-04-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 A4U88_RS17725 3cf64c3e9146717b8839ddc37ac50358 312 Gene3D G3DSA:3.20.20.330 4 311 7.7E-95 T 25-04-2017 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 SUPERFAMILY SSF103088 49 164 2.22E-32 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 Pfam PF00691 OmpA family 63 157 3.3E-18 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 126 145 9.2E-9 T 25-04-2017 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 108 125 9.2E-9 T 25-04-2017 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 146 165 9.2E-9 T 25-04-2017 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 PRINTS PR01021 OMPA domain signature 63 85 4.2E-10 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 PRINTS PR01021 OMPA domain signature 108 124 4.2E-10 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 PRINTS PR01021 OMPA domain signature 93 108 4.2E-10 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS02945 1246e7f149b0afb6f65d9a9bb64be09d 165 Gene3D G3DSA:3.30.1330.60 49 164 1.2E-33 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 SUPERFAMILY SSF46689 5 55 1.08E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 Pfam PF12833 Helix-turn-helix domain 27 105 3.2E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 2.2E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 2.2E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 Gene3D G3DSA:1.10.10.60 58 113 6.7E-24 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 SUPERFAMILY SSF46689 57 111 2.55E-14 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 SMART SM00342 21 104 9.6E-32 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS07405 80ebb1d758c5f23dfa6dcba3bf092979 152 Gene3D G3DSA:1.10.10.60 3 57 1.8E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS01205 fb6d29a7021a83793b54c815d8f17451 259 Gene3D G3DSA:3.20.20.70 1 257 5.1E-63 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS01205 fb6d29a7021a83793b54c815d8f17451 259 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 247 6.5E-108 T 25-04-2017 A4U88_RS01205 fb6d29a7021a83793b54c815d8f17451 259 SUPERFAMILY SSF110399 1 235 7.85E-85 T 25-04-2017 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 A4U88_RS01205 fb6d29a7021a83793b54c815d8f17451 259 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 43.124 T 25-04-2017 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 A4U88_RS06295 799c94bfc90b5a7c19849df8d569b935 305 Pfam PF01933 Uncharacterised protein family UPF0052 12 291 8.3E-75 T 25-04-2017 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 A4U88_RS06295 799c94bfc90b5a7c19849df8d569b935 305 SUPERFAMILY SSF142338 11 294 4.32E-80 T 25-04-2017 A4U88_RS06295 799c94bfc90b5a7c19849df8d569b935 305 Gene3D G3DSA:3.40.50.10680 82 299 3.8E-51 T 25-04-2017 A4U88_RS06295 799c94bfc90b5a7c19849df8d569b935 305 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 269 9.3E-94 T 25-04-2017 IPR010119 Gluconeogenesis factor A4U88_RS06295 799c94bfc90b5a7c19849df8d569b935 305 Hamap MF_00973 Gluconeogenesis factor. 8 300 31.296 T 25-04-2017 IPR010119 Gluconeogenesis factor A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 SUPERFAMILY SSF47384 230 312 6.47E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 SMART SM00304 194 246 2.5E-4 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 SUPERFAMILY SSF55874 303 466 2.75E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 Pfam PF00672 HAMP domain 179 242 3.2E-8 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 SMART SM00387 359 472 6.6E-22 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 SMART SM00388 247 312 4.8E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 248 311 3.7E-8 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 Gene3D G3DSA:1.10.287.130 239 308 2.0E-8 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 453 7.9E-12 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 Gene3D G3DSA:3.30.565.10 317 468 8.6E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17055 5820c6b56842eab84e5b4c3a85359343 472 Pfam PF08521 Two-component sensor kinase N-terminal 22 170 6.1E-41 T 25-04-2017 IPR013727 Two-component sensor kinase, N-terminal A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 25-04-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 SUPERFAMILY SSF53901 296 435 8.74E-32 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 2.2E-132 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Gene3D G3DSA:3.40.47.10 15 134 4.9E-56 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Gene3D G3DSA:3.40.47.10 221 300 4.9E-56 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 70.4 T 25-04-2017 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0005737|GO:0006631|GO:0016042|GO:0016740|GO:0016746 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 SUPERFAMILY SSF53901 15 295 4.84E-64 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 25-04-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 4.7E-259 T 25-04-2017 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0005737|GO:0006631|GO:0016042|GO:0016740|GO:0016746 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 1.9E-35 T 25-04-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 5.5E-62 T 25-04-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 PIRSF PIRSF000429 9 436 2.0E-124 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 25-04-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Gene3D G3DSA:3.40.47.10 175 220 6.6E-47 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17215 96db17f6bacb67b9abbe379b96f702da 436 Gene3D G3DSA:3.40.47.10 302 436 6.6E-47 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS20950 1d4a70b32d99176def476cdf439e7dcc 260 Gene3D G3DSA:3.40.830.10 1 260 2.2E-96 T 25-04-2017 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 A4U88_RS20950 1d4a70b32d99176def476cdf439e7dcc 260 PIRSF PIRSF006157 1 260 5.5E-91 T 25-04-2017 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type GO:0008270|GO:0016701|GO:0055114 A4U88_RS20950 1d4a70b32d99176def476cdf439e7dcc 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 237 4.5E-31 T 25-04-2017 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 A4U88_RS20950 1d4a70b32d99176def476cdf439e7dcc 260 SUPERFAMILY SSF53213 5 259 1.57E-91 T 25-04-2017 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 A4U88_RS12400 4d323205a627dfbcf0c16f45d9aff8a6 328 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 5 322 6.9E-102 T 25-04-2017 IPR019949 Luciferase family oxidoreductase, group 1 A4U88_RS12400 4d323205a627dfbcf0c16f45d9aff8a6 328 Pfam PF00296 Luciferase-like monooxygenase 18 110 2.9E-22 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS12400 4d323205a627dfbcf0c16f45d9aff8a6 328 Gene3D G3DSA:3.20.20.30 5 323 1.0E-71 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS12400 4d323205a627dfbcf0c16f45d9aff8a6 328 SUPERFAMILY SSF51679 5 323 9.81E-62 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15110 954aa76ef6d4aac181180734a1d3da0f 219 Pfam PF04717 Type VI secretion system, phage-baseplate injector 7 117 2.1E-43 T 25-04-2017 IPR006531 Gp5 N-terminal A4U88_RS15110 954aa76ef6d4aac181180734a1d3da0f 219 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 9 209 2.5E-56 T 25-04-2017 IPR013046 Phage baseplate assembly protein V/Gp45 A4U88_RS04210 a8c6314fc094cb323a39937bc62ea7ef 82 Pfam PF01381 Helix-turn-helix 16 67 6.4E-11 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS04210 a8c6314fc094cb323a39937bc62ea7ef 82 SMART SM00530 15 70 1.2E-8 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS04210 a8c6314fc094cb323a39937bc62ea7ef 82 SUPERFAMILY SSF47413 9 70 2.6E-14 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS04210 a8c6314fc094cb323a39937bc62ea7ef 82 Gene3D G3DSA:1.10.260.40 3 71 3.8E-20 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07570 285cf19bd972b3867413d77ef97dc569 330 Gene3D G3DSA:3.40.50.2300 26 142 1.9E-28 T 25-04-2017 A4U88_RS07570 285cf19bd972b3867413d77ef97dc569 330 Pfam PF13407 Periplasmic binding protein domain 27 298 3.3E-64 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS07570 285cf19bd972b3867413d77ef97dc569 330 SUPERFAMILY SSF53822 24 329 2.55E-85 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS07570 285cf19bd972b3867413d77ef97dc569 330 Gene3D G3DSA:3.40.50.2300 143 292 6.9E-54 T 25-04-2017 A4U88_RS12735 ba5504bc6700dcf4ce907de1a8e2aed8 186 SUPERFAMILY SSF51161 8 137 6.55E-31 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS12735 ba5504bc6700dcf4ce907de1a8e2aed8 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 79 111 4.8E-6 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS12735 ba5504bc6700dcf4ce907de1a8e2aed8 186 Gene3D G3DSA:2.160.10.10 9 182 7.0E-35 T 25-04-2017 A4U88_RS04135 ab4aedee73f1fb502a70d2dea948beb8 209 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 206 1.4E-104 T 25-04-2017 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 A4U88_RS04135 ab4aedee73f1fb502a70d2dea948beb8 209 PIRSF PIRSF006102 3 209 5.9E-71 T 25-04-2017 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 A4U88_RS04135 ab4aedee73f1fb502a70d2dea948beb8 209 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.687 T 25-04-2017 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 A4U88_RS04135 ab4aedee73f1fb502a70d2dea948beb8 209 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 6.4E-62 T 25-04-2017 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 SUPERFAMILY SSF52540 4 170 7.83E-35 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 Gene3D G3DSA:3.40.50.300 2 172 5.2E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.3E-29 T 25-04-2017 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.3E-29 T 25-04-2017 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.3E-29 T 25-04-2017 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.3E-29 T 25-04-2017 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.3E-29 T 25-04-2017 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 Pfam PF01202 Shikimate kinase 13 170 7.3E-57 T 25-04-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 25-04-2017 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS22650 223a54596d7bfdc0ef12acb32959857c 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.478 T 25-04-2017 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS12245 d23fc4be133ab0ced0bf137ba57b7dd5 539 PIRSF PIRSF002741 4 539 2.0E-106 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS12245 d23fc4be133ab0ced0bf137ba57b7dd5 539 Gene3D G3DSA:3.40.190.10 156 307 5.7E-51 T 25-04-2017 A4U88_RS12245 d23fc4be133ab0ced0bf137ba57b7dd5 539 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 459 1.5E-80 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS12245 d23fc4be133ab0ced0bf137ba57b7dd5 539 SUPERFAMILY SSF53850 38 536 6.36E-130 T 25-04-2017 A4U88_RS12245 d23fc4be133ab0ced0bf137ba57b7dd5 539 Gene3D G3DSA:3.10.105.10 308 507 5.2E-55 T 25-04-2017 A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 119 190 8.1E-11 T 25-04-2017 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 SUPERFAMILY SSF51735 102 267 2.22E-43 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 Gene3D G3DSA:3.40.192.10 1 107 1.8E-35 T 25-04-2017 A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 8.8E-24 T 25-04-2017 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 32.377 T 25-04-2017 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 270 1.0E-95 T 25-04-2017 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 SUPERFAMILY SSF53223 2 101 6.33E-30 T 25-04-2017 A4U88_RS22145 2e9ddd5e42899339c376bb0ebb7444b2 272 Gene3D G3DSA:3.40.50.720 108 244 2.7E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22490 ce8ee19ae448156b6d73b46a6d3a4a0a 77 Pfam PF06794 Uncharacterised protein family (UPF0270) 2 68 8.3E-35 T 25-04-2017 IPR010648 Uncharacterised protein family UPF0270 A4U88_RS22490 ce8ee19ae448156b6d73b46a6d3a4a0a 77 PIRSF PIRSF006169 1 76 8.3E-38 T 25-04-2017 IPR010648 Uncharacterised protein family UPF0270 A4U88_RS22490 ce8ee19ae448156b6d73b46a6d3a4a0a 77 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 6.0E-27 T 25-04-2017 IPR010648 Uncharacterised protein family UPF0270 A4U88_RS22490 ce8ee19ae448156b6d73b46a6d3a4a0a 77 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.549 T 25-04-2017 IPR010648 Uncharacterised protein family UPF0270 A4U88_RS22490 ce8ee19ae448156b6d73b46a6d3a4a0a 77 Gene3D G3DSA:1.10.10.610 1 72 1.7E-37 T 25-04-2017 IPR010648 Uncharacterised protein family UPF0270 A4U88_RS22490 ce8ee19ae448156b6d73b46a6d3a4a0a 77 SUPERFAMILY SSF118001 1 72 1.31E-29 T 25-04-2017 IPR010648 Uncharacterised protein family UPF0270 A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 5.8E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 5.8E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 Pfam PF07702 UTRA domain 91 228 2.8E-36 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 SUPERFAMILY SSF46785 5 84 2.73E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 70 1.2E-17 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 Gene3D G3DSA:1.10.10.10 7 66 2.9E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 SMART SM00345 11 70 4.0E-17 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 Gene3D G3DSA:3.40.1410.10 67 234 1.8E-41 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 SUPERFAMILY SSF64288 58 233 7.54E-43 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS22055 7daa7e008f36d75146cfaf45fd93f356 236 SMART SM00866 91 230 6.5E-33 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 Gene3D G3DSA:3.30.450.80 13 180 3.5E-29 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 SMART SM00421 175 232 4.4E-16 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 231 2.2E-16 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 SUPERFAMILY SSF46894 171 237 5.44E-15 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 1.7E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 1.7E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 1.7E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 Pfam PF03472 Autoinducer binding domain 24 161 8.7E-31 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 ProSitePatterns PS00622 LuxR-type HTH domain signature. 192 219 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 SUPERFAMILY SSF75516 12 164 1.03E-29 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS08810 3c35eed8082d7182cdf6ec8ccc12dfca 238 Gene3D G3DSA:1.10.10.10 181 238 7.6E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 Gene3D G3DSA:3.20.20.80 24 318 8.5E-58 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 SUPERFAMILY SSF51055 435 478 2.49E-16 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 Pfam PF00704 Glycosyl hydrolases family 18 27 305 1.3E-28 T 25-04-2017 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 SMART SM00495 433 479 2.0E-13 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 SMART SM00060 338 411 3.4E-6 T 25-04-2017 IPR003961 Fibronectin type III GO:0005515 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 Gene3D G3DSA:2.60.40.10 337 421 1.2E-16 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 SUPERFAMILY SSF51445 23 317 2.45E-49 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 ProSitePatterns PS01095 Chitinases family 18 active site. 133 141 - T 25-04-2017 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 Gene3D G3DSA:2.10.10.20 435 478 4.3E-22 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 SUPERFAMILY SSF49265 332 424 2.79E-14 T 25-04-2017 IPR003961 Fibronectin type III GO:0005515 A4U88_RS05765 7c0cd721309573ffe67d201eeba07694 480 Pfam PF02839 Carbohydrate binding domain 433 469 3.2E-8 T 25-04-2017 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 A4U88_RS20060 d2c2458bac005c4642ba639290a4a275 205 Pfam PF01810 LysE type translocator 14 201 2.3E-53 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS20060 d2c2458bac005c4642ba639290a4a275 205 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 1.1E-68 T 25-04-2017 IPR004777 L-lysine exporter/arginine exporter GO:0016021 A4U88_RS20060 d2c2458bac005c4642ba639290a4a275 205 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 39.146 T 25-04-2017 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 A4U88_RS19380 a65d4400057883ad5a1eb41acfaed81c 268 Gene3D G3DSA:3.40.50.720 5 260 8.7E-54 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19380 a65d4400057883ad5a1eb41acfaed81c 268 Pfam PF00899 ThiF family 23 262 3.7E-37 T 25-04-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 A4U88_RS19380 a65d4400057883ad5a1eb41acfaed81c 268 SUPERFAMILY SSF69572 6 259 3.92E-64 T 25-04-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 A4U88_RS03350 13cc51fe7f5f00b795d2d37b2792b787 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.0E-5 T 25-04-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03350 13cc51fe7f5f00b795d2d37b2792b787 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.989 T 25-04-2017 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03350 13cc51fe7f5f00b795d2d37b2792b787 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 25-04-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03350 13cc51fe7f5f00b795d2d37b2792b787 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 1.4E-161 T 25-04-2017 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03350 13cc51fe7f5f00b795d2d37b2792b787 360 Pfam PF00953 Glycosyl transferase family 4 99 284 6.2E-37 T 25-04-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 A4U88_RS03350 13cc51fe7f5f00b795d2d37b2792b787 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 25-04-2017 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS22050 b73c0621219c3fee3747bd698a778280 353 Gene3D G3DSA:3.40.190.10 139 274 2.8E-21 T 25-04-2017 A4U88_RS22050 b73c0621219c3fee3747bd698a778280 353 Gene3D G3DSA:3.40.190.10 275 323 2.1E-24 T 25-04-2017 A4U88_RS22050 b73c0621219c3fee3747bd698a778280 353 Gene3D G3DSA:3.40.190.10 1 134 2.1E-24 T 25-04-2017 A4U88_RS22050 b73c0621219c3fee3747bd698a778280 353 Pfam PF13343 Bacterial extracellular solute-binding protein 87 334 1.2E-50 T 25-04-2017 A4U88_RS22050 b73c0621219c3fee3747bd698a778280 353 SUPERFAMILY SSF53850 36 345 4.3E-47 T 25-04-2017 A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 207 - T 25-04-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 SMART SM00829 9 343 3.2E-5 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 SUPERFAMILY SSF50129 6 173 1.11E-49 T 25-04-2017 IPR011032 GroES-like A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 SUPERFAMILY SSF51735 149 313 4.26E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 Gene3D G3DSA:3.90.180.10 4 180 6.9E-62 T 25-04-2017 IPR011032 GroES-like A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 Gene3D G3DSA:3.40.50.720 181 293 1.4E-24 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 144 8.9E-26 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 Pfam PF00107 Zinc-binding dehydrogenase 186 307 1.2E-24 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS21815 e454b2c10a3cb3dae263852186da9004 350 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Gene3D G3DSA:3.30.1360.120 1 121 2.9E-42 T 25-04-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Gene3D G3DSA:3.40.50.300 211 247 6.9E-8 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Gene3D G3DSA:3.40.50.300 286 375 2.5E-8 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Pfam PF01926 50S ribosome-binding GTPase 218 335 6.6E-24 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 32.977 T 25-04-2017 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Gene3D G3DSA:1.20.120.430 122 182 1.9E-58 T 25-04-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Gene3D G3DSA:1.20.120.430 248 271 1.9E-58 T 25-04-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Gene3D G3DSA:1.20.120.430 384 454 1.9E-58 T 25-04-2017 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 SUPERFAMILY SSF52540 72 152 2.12E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 SUPERFAMILY SSF52540 188 372 2.12E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 1.8E-34 T 25-04-2017 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 SUPERFAMILY SSF116878 379 454 6.28E-51 T 25-04-2017 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 SUPERFAMILY SSF116878 121 220 6.28E-51 T 25-04-2017 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 3.3E-98 T 25-04-2017 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 371 6.2E-23 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS24225 528060c87f00db58d4339aabb05d1779 454 Pfam PF12631 MnmE helical domain 123 451 1.0E-59 T 25-04-2017 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 A4U88_RS12290 a49c2524ccea0317b9b8df86436bcb82 477 Gene3D G3DSA:3.40.605.10 4 263 9.9E-91 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS12290 a49c2524ccea0317b9b8df86436bcb82 477 SUPERFAMILY SSF53720 2 474 7.46E-159 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS12290 a49c2524ccea0317b9b8df86436bcb82 477 Pfam PF00171 Aldehyde dehydrogenase family 16 472 3.7E-156 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS12290 a49c2524ccea0317b9b8df86436bcb82 477 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS12290 a49c2524ccea0317b9b8df86436bcb82 477 Gene3D G3DSA:3.40.309.10 264 452 5.0E-63 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS06485 0072ef001b78b4e9565e572c0d8495ea 151 SUPERFAMILY SSF55729 1 136 3.09E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06485 0072ef001b78b4e9565e572c0d8495ea 151 Pfam PF00583 Acetyltransferase (GNAT) family 55 135 3.1E-10 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS06485 0072ef001b78b4e9565e572c0d8495ea 151 Gene3D G3DSA:3.40.630.30 2 138 8.3E-40 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 Pfam PF00085 Thioredoxin 37 137 2.7E-27 T 25-04-2017 IPR013766 Thioredoxin domain GO:0045454 A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 SUPERFAMILY SSF52833 24 138 8.87E-39 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 TIGRFAM TIGR01068 thioredoxin: thioredoxin 45 137 2.7E-36 T 25-04-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 Gene3D G3DSA:3.40.30.10 30 138 2.8E-36 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 PRINTS PR00421 Thioredoxin family signature 103 114 1.3E-8 T 25-04-2017 A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 PRINTS PR00421 Thioredoxin family signature 55 63 1.3E-8 T 25-04-2017 A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 PRINTS PR00421 Thioredoxin family signature 63 72 1.3E-8 T 25-04-2017 A4U88_RS19045 11c4af419c3140ef6ee93ed7b3ab0650 139 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS00065 9dce1bf12c674f6a3e1a0ee064206120 126 Gene3D G3DSA:3.40.50.1010 4 114 8.5E-26 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS00065 9dce1bf12c674f6a3e1a0ee064206120 126 Pfam PF01850 PIN domain 7 107 3.8E-13 T 25-04-2017 IPR002716 PIN domain A4U88_RS00065 9dce1bf12c674f6a3e1a0ee064206120 126 SUPERFAMILY SSF88723 4 116 7.01E-25 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS05580 6246ae3c10b3e1273d90d97a64a755be 355 Pfam PF00990 Diguanylate cyclase, GGDEF domain 191 346 3.1E-43 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS05580 6246ae3c10b3e1273d90d97a64a755be 355 Gene3D G3DSA:3.30.70.270 192 349 1.6E-46 T 25-04-2017 A4U88_RS05580 6246ae3c10b3e1273d90d97a64a755be 355 SMART SM00267 179 350 2.2E-56 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS05580 6246ae3c10b3e1273d90d97a64a755be 355 Pfam PF05230 MASE2 domain 20 107 1.4E-30 T 25-04-2017 IPR007894 MASE2 A4U88_RS05580 6246ae3c10b3e1273d90d97a64a755be 355 SUPERFAMILY SSF55073 195 348 5.65E-44 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS05580 6246ae3c10b3e1273d90d97a64a755be 355 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 186 349 9.0E-52 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 Gene3D G3DSA:3.50.50.60 266 354 1.0E-36 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 Gene3D G3DSA:3.50.50.60 2 180 1.0E-36 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 25-04-2017 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 388 2.0E-131 T 25-04-2017 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 388 1.0E-144 T 25-04-2017 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 Pfam PF01494 FAD binding domain 2 343 3.4E-25 T 25-04-2017 IPR002938 FAD-binding domain GO:0071949 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 SUPERFAMILY SSF51905 265 382 1.75E-54 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 SUPERFAMILY SSF51905 2 175 1.75E-54 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.8E-14 T 25-04-2017 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.8E-14 T 25-04-2017 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 1.8E-14 T 25-04-2017 A4U88_RS20010 0ec769d4a146747d50056f2fa7668697 392 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 1.8E-14 T 25-04-2017 A4U88_RS09665 e2b2e31fc208cefd15b0c8a5ac605ab4 314 Gene3D G3DSA:3.20.20.140 6 311 1.9E-101 T 25-04-2017 A4U88_RS09665 e2b2e31fc208cefd15b0c8a5ac605ab4 314 SUPERFAMILY SSF51556 6 310 1.53E-79 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS09665 e2b2e31fc208cefd15b0c8a5ac605ab4 314 Pfam PF04909 Amidohydrolase 7 310 3.8E-41 T 25-04-2017 IPR006680 Amidohydrolase-related GO:0016787 A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 SUPERFAMILY SSF52218 1 146 4.38E-42 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 Pfam PF00258 Flavodoxin 7 138 5.7E-27 T 25-04-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 Gene3D G3DSA:3.40.50.360 1 146 5.2E-38 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 PRINTS PR00369 Flavodoxin signature 106 125 8.9E-7 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 PRINTS PR00369 Flavodoxin signature 82 92 8.9E-7 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 PRINTS PR00369 Flavodoxin signature 5 18 8.9E-7 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS24080 61d5fbdaacf09a70852e4277163de0ca 146 PRINTS PR00369 Flavodoxin signature 51 62 8.9E-7 T 25-04-2017 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 A4U88_RS03235 31de1a1d44cf1efc68cd687bab4e0aea 234 Pfam PF00005 ABC transporter 19 157 1.1E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS03235 31de1a1d44cf1efc68cd687bab4e0aea 234 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS03235 31de1a1d44cf1efc68cd687bab4e0aea 234 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 210 4.7E-100 T 25-04-2017 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 A4U88_RS03235 31de1a1d44cf1efc68cd687bab4e0aea 234 Gene3D G3DSA:3.40.50.300 2 221 9.4E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03235 31de1a1d44cf1efc68cd687bab4e0aea 234 SUPERFAMILY SSF52540 1 222 1.36E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03235 31de1a1d44cf1efc68cd687bab4e0aea 234 SMART SM00382 24 214 6.0E-20 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24185 5bd2b828ff66c3080c3f96ccacab97c2 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 116 1.0E-16 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS24185 5bd2b828ff66c3080c3f96ccacab97c2 246 SUPERFAMILY SSF161098 22 212 2.22E-41 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24185 5bd2b828ff66c3080c3f96ccacab97c2 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 223 6.9E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24185 5bd2b828ff66c3080c3f96ccacab97c2 246 Gene3D G3DSA:1.10.3720.10 24 223 1.6E-43 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PIRSF PIRSF019574 1 369 8.1E-140 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 Gene3D G3DSA:3.40.190.10 25 149 3.0E-13 T 25-04-2017 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 SUPERFAMILY SSF53850 28 368 1.95E-105 T 25-04-2017 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 Pfam PF13416 Bacterial extracellular solute-binding protein 46 334 2.1E-37 T 25-04-2017 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 157 171 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 180 199 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 313 339 1.1E-71 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS08060 09c86c8fe2bdf79150b62398445bf165 369 Gene3D G3DSA:3.40.190.10 150 318 1.1E-76 T 25-04-2017 A4U88_RS01335 e21538ce465767cb601411a6fd5f30ed 536 SUPERFAMILY SSF52777 4 177 1.45E-22 T 25-04-2017 A4U88_RS01335 e21538ce465767cb601411a6fd5f30ed 536 Pfam PF00668 Condensation domain 3 294 4.9E-36 T 25-04-2017 IPR001242 Condensation domain A4U88_RS01335 e21538ce465767cb601411a6fd5f30ed 536 SUPERFAMILY SSF52777 183 435 6.23E-36 T 25-04-2017 A4U88_RS01335 e21538ce465767cb601411a6fd5f30ed 536 Pfam PF08415 Nonribosomal peptide synthase 317 375 1.1E-11 T 25-04-2017 IPR013624 Non-ribosomal peptide synthetase A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 SUPERFAMILY SSF54909 62 151 1.01E-20 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 4.2E-17 T 25-04-2017 A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 Gene3D G3DSA:1.10.10.10 3 54 5.4E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 Gene3D G3DSA:3.30.70.920 55 139 1.5E-29 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 SMART SM00344 2 111 8.8E-36 T 25-04-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 2.8E-20 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 SUPERFAMILY SSF46785 2 92 2.46E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 20 46 - T 25-04-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 9.3E-9 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS05005 c8efcadecc3e7b71bda7c7447b0e09b9 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 9.3E-9 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 SUPERFAMILY SSF109998 203 240 2.62E-36 T 25-04-2017 IPR027304 Trigger factor/SurA domain A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 SUPERFAMILY SSF109998 40 169 2.62E-36 T 25-04-2017 IPR027304 Trigger factor/SurA domain A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 Pfam PF13145 PPIC-type PPIASE domain 381 486 1.4E-6 T 25-04-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 Pfam PF13145 PPIC-type PPIASE domain 249 370 4.6E-23 T 25-04-2017 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 297 318 - T 25-04-2017 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-936440 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 Gene3D G3DSA:1.10.3120.10 53 123 2.4E-4 T 25-04-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 SUPERFAMILY SSF54534 225 357 7.2E-23 T 25-04-2017 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 Pfam PF13624 SurA N-terminal domain 1 165 1.2E-51 T 25-04-2017 A4U88_RS04970 fed535f6d0d5d8709e04fe82fcbeadbe 627 Gene3D G3DSA:3.10.50.40 261 382 2.4E-28 T 25-04-2017 A4U88_RS12760 e1b5439a72372b8f791cd601fd67194d 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 5.3E-20 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS12760 e1b5439a72372b8f791cd601fd67194d 330 SMART SM00382 32 235 6.5E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12760 e1b5439a72372b8f791cd601fd67194d 330 Gene3D G3DSA:3.40.50.300 2 262 3.1E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12760 e1b5439a72372b8f791cd601fd67194d 330 SUPERFAMILY SSF52540 3 266 3.03E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12760 e1b5439a72372b8f791cd601fd67194d 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 1.2E-16 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS12760 e1b5439a72372b8f791cd601fd67194d 330 Pfam PF00005 ABC transporter 24 187 1.3E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 SUPERFAMILY SSF142433 250 379 7.72E-5 T 25-04-2017 IPR008136 CinA, C-terminal A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 4.9E-32 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 Pfam PF00994 Probable molybdopterin binding domain 6 170 1.8E-30 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 SUPERFAMILY SSF53218 2 192 8.25E-35 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 397 6.9E-123 T 25-04-2017 IPR008135 Competence-induced protein CinA A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 SMART SM00852 5 172 3.3E-35 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 Gene3D G3DSA:3.40.980.10 2 198 1.7E-26 T 25-04-2017 IPR001453 MoaB/Mog domain A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 398 115.483 T 25-04-2017 IPR008135 Competence-induced protein CinA A4U88_RS16715 25f061611466f24a5c33ec716e4a8ce5 398 PIRSF PIRSF006728 1 385 2.9E-105 T 25-04-2017 IPR008135 Competence-induced protein CinA A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 PIRSF PIRSF000138 2 379 3.5E-121 T 25-04-2017 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 Gene3D G3DSA:3.20.20.70 7 376 4.4E-134 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 379 74.238 T 25-04-2017 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 SUPERFAMILY SSF51395 223 372 2.08E-100 T 25-04-2017 A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 SUPERFAMILY SSF51395 7 193 2.08E-100 T 25-04-2017 A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 25-04-2017 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 A4U88_RS19705 a8fdd70ff8861c8eca3125d95ad3a044 379 Pfam PF01070 FMN-dependent dehydrogenase 13 375 4.5E-126 T 25-04-2017 IPR000262 FMN-dependent dehydrogenase GO:0016491 A4U88_RS09305 fb08a8e82d132f3e1dee14bef5fcc55a 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 1.0E-71 T 25-04-2017 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA A4U88_RS09305 fb08a8e82d132f3e1dee14bef5fcc55a 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 51.662 T 25-04-2017 IPR022987 Uncharacterised protein family UPF0227 A4U88_RS09305 fb08a8e82d132f3e1dee14bef5fcc55a 180 SUPERFAMILY SSF53474 2 176 2.11E-7 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 Gene3D G3DSA:1.10.441.10 274 287 5.9E-22 T 25-04-2017 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 Gene3D G3DSA:1.10.441.10 141 231 5.9E-22 T 25-04-2017 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 25-04-2017 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 6.1E-72 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 Gene3D G3DSA:2.60.120.10 238 273 4.4E-65 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 Gene3D G3DSA:2.60.120.10 6 140 4.4E-65 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 Gene3D G3DSA:2.60.120.10 288 374 1.1E-11 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 2 385 2.3E-116 T 25-04-2017 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 Pfam PF01238 Phosphomannose isomerase type I 1 356 7.4E-100 T 25-04-2017 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 25-04-2017 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 PIRSF PIRSF001480 1 392 5.7E-107 T 25-04-2017 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 A4U88_RS11095 db3bb838411a0f4372145b8132b55128 392 SUPERFAMILY SSF51182 1 374 7.84E-102 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS10710 aa737eb49d9def3eac8bc0c62b8abae9 78 PIRSF PIRSF002855 1 78 1.1E-29 T 25-04-2017 IPR016367 Murein-lipoprotein A4U88_RS10710 aa737eb49d9def3eac8bc0c62b8abae9 78 Gene3D G3DSA:1.20.5.190 22 73 1.9E-24 T 25-04-2017 A4U88_RS10710 aa737eb49d9def3eac8bc0c62b8abae9 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 2.6E-25 T 25-04-2017 IPR006817 Lipoprotein leucine-zipper GO:0019867 A4U88_RS10710 aa737eb49d9def3eac8bc0c62b8abae9 78 SUPERFAMILY SSF58042 24 73 7.72E-23 T 25-04-2017 A4U88_RS14580 bdea64068a671e3b6a1f4524c2630614 139 Pfam PF00582 Universal stress protein family 2 138 3.2E-11 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS14580 bdea64068a671e3b6a1f4524c2630614 139 PIRSF PIRSF006276 1 139 4.4E-36 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS14580 bdea64068a671e3b6a1f4524c2630614 139 SUPERFAMILY SSF52402 3 138 1.34E-17 T 25-04-2017 A4U88_RS14580 bdea64068a671e3b6a1f4524c2630614 139 Gene3D G3DSA:3.40.50.620 3 138 3.8E-16 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03320 0140e9fdb2be4d69f77ca1b39e986d1e 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 7.7E-24 T 25-04-2017 IPR020603 MraZ domain A4U88_RS03320 0140e9fdb2be4d69f77ca1b39e986d1e 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 141 6.3E-21 T 25-04-2017 IPR020603 MraZ domain A4U88_RS03320 0140e9fdb2be4d69f77ca1b39e986d1e 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 141 3.0E-76 T 25-04-2017 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 A4U88_RS03320 0140e9fdb2be4d69f77ca1b39e986d1e 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 58.272 T 25-04-2017 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 A4U88_RS03320 0140e9fdb2be4d69f77ca1b39e986d1e 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 7.1E-64 T 25-04-2017 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 A4U88_RS03320 0140e9fdb2be4d69f77ca1b39e986d1e 152 SUPERFAMILY SSF89447 1 138 5.58E-46 T 25-04-2017 A4U88_RS11925 54156870e4b88f0f3ad212a5d46a65a9 113 SUPERFAMILY SSF81301 6 113 3.07E-27 T 25-04-2017 A4U88_RS11925 54156870e4b88f0f3ad212a5d46a65a9 113 Pfam PF04229 GrpB protein 9 112 7.6E-26 T 25-04-2017 IPR007344 GrpB/Dephospho-CoA kinase A4U88_RS11925 54156870e4b88f0f3ad212a5d46a65a9 113 Gene3D G3DSA:3.30.460.10 8 112 7.8E-30 T 25-04-2017 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 Gene3D G3DSA:1.10.10.60 58 119 8.3E-21 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 SUPERFAMILY SSF55136 123 282 7.59E-26 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 Gene3D G3DSA:3.20.80.10 124 284 4.1E-43 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 Pfam PF06445 GyrI-like small molecule binding domain 129 282 2.1E-11 T 25-04-2017 IPR029442 GyrI-like small molecule binding domain A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 Pfam PF12833 Helix-turn-helix domain 27 105 1.1E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 SMART SM00342 21 104 1.1E-29 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 SUPERFAMILY SSF46689 57 109 6.31E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 58 100 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 SMART SM00871 126 282 2.1E-8 T 25-04-2017 IPR010499 Bacterial transcription activator, effector binding A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 Gene3D G3DSA:1.10.10.60 1 57 1.3E-21 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02525 56bca9b5ac734e7ca1d7f9888c3de615 291 SUPERFAMILY SSF46689 5 55 2.24E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12200 013949cb6b6a07ca3377722f98f1ffca 480 Gene3D G3DSA:3.30.70.270 311 470 3.3E-46 T 25-04-2017 A4U88_RS12200 013949cb6b6a07ca3377722f98f1ffca 480 SMART SM00267 299 470 1.4E-50 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS12200 013949cb6b6a07ca3377722f98f1ffca 480 SUPERFAMILY SSF55073 315 470 2.12E-39 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS12200 013949cb6b6a07ca3377722f98f1ffca 480 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 306 469 4.6E-44 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS12200 013949cb6b6a07ca3377722f98f1ffca 480 Pfam PF00990 Diguanylate cyclase, GGDEF domain 310 466 1.4E-38 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 SUPERFAMILY SSF51556 53 318 1.26E-72 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 SUPERFAMILY SSF51338 1 53 2.49E-11 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 SUPERFAMILY SSF51338 318 340 2.49E-11 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 Pfam PF01979 Amidohydrolase family 249 342 7.1E-9 T 25-04-2017 IPR006680 Amidohydrolase-related GO:0016787 A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 PIRSF PIRSF039004 1 377 1.9E-130 T 25-04-2017 IPR020043 Amidohydrolase EF0837/AHA3915, putative A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 Gene3D G3DSA:3.20.20.140 58 305 3.9E-114 T 25-04-2017 A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 Gene3D G3DSA:2.30.40.10 306 345 2.9E-5 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 366 1.4E-161 T 25-04-2017 IPR020043 Amidohydrolase EF0837/AHA3915, putative A4U88_RS21460 b8384deb8eaf212afe975399dd31fe43 379 Gene3D G3DSA:2.30.40.10 3 57 1.9E-5 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS22160 9cfbcf13dad184881dc9695e46d67d41 157 Hamap MF_00598 Protein Smg [smg]. 1 157 32.541 T 25-04-2017 IPR007456 Smg A4U88_RS22160 9cfbcf13dad184881dc9695e46d67d41 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 3.6E-61 T 25-04-2017 IPR007456 Smg A4U88_RS12695 3299d678bb04f3bfd471872c1ab56c6d 465 PIRSF PIRSF019381 1 465 3.4E-218 T 25-04-2017 IPR007413 Protein of unknown function DUF463, YcjX-like protein A4U88_RS12695 3299d678bb04f3bfd471872c1ab56c6d 465 Pfam PF04317 YcjX-like family, DUF463 20 464 1.3E-188 T 25-04-2017 IPR007413 Protein of unknown function DUF463, YcjX-like protein A4U88_RS15975 36edb207f2b743b00d508020d85a2f43 396 Gene3D G3DSA:1.20.1250.20 207 388 7.9E-13 T 25-04-2017 A4U88_RS15975 36edb207f2b743b00d508020d85a2f43 396 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 1 390 29.104 T 25-04-2017 IPR023495 Sugar efflux transporter, putative A4U88_RS15975 36edb207f2b743b00d508020d85a2f43 396 Pfam PF07690 Major Facilitator Superfamily 19 349 9.0E-32 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS15975 36edb207f2b743b00d508020d85a2f43 396 SUPERFAMILY SSF103473 4 388 8.89E-55 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS15975 36edb207f2b743b00d508020d85a2f43 396 Gene3D G3DSA:1.20.1250.20 12 195 2.5E-27 T 25-04-2017 A4U88_RS14085 ef4182e8fa821c750ea798ceadaa0e41 351 Gene3D G3DSA:3.40.50.2000 178 330 2.0E-26 T 25-04-2017 A4U88_RS14085 ef4182e8fa821c750ea798ceadaa0e41 351 Pfam PF13439 Glycosyltransferase Family 4 17 163 9.7E-11 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS14085 ef4182e8fa821c750ea798ceadaa0e41 351 Pfam PF00534 Glycosyl transferases group 1 176 330 3.0E-40 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS14085 ef4182e8fa821c750ea798ceadaa0e41 351 SUPERFAMILY SSF53756 5 350 6.73E-74 T 25-04-2017 A4U88_RS16080 407f214b40e165e5cc1978cb7ef5150c 390 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 25-04-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 A4U88_RS16080 407f214b40e165e5cc1978cb7ef5150c 390 SUPERFAMILY SSF53383 7 387 3.23E-98 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS16080 407f214b40e165e5cc1978cb7ef5150c 390 Gene3D G3DSA:3.90.1150.10 278 386 9.4E-25 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS16080 407f214b40e165e5cc1978cb7ef5150c 390 Gene3D G3DSA:3.40.640.10 63 277 2.8E-79 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS16080 407f214b40e165e5cc1978cb7ef5150c 390 Pfam PF00155 Aminotransferase class I and II 49 384 1.5E-53 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS23560 2941f34e4bfc0c7651f2a1396205909b 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.324 T 25-04-2017 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 A4U88_RS23560 2941f34e4bfc0c7651f2a1396205909b 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 2.7E-87 T 25-04-2017 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 A4U88_RS23560 2941f34e4bfc0c7651f2a1396205909b 161 Gene3D G3DSA:3.50.30.40 1 156 1.7E-44 T 25-04-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein A4U88_RS23560 2941f34e4bfc0c7651f2a1396205909b 161 Pfam PF03737 Demethylmenaquinone methyltransferase 5 152 2.0E-35 T 25-04-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein A4U88_RS23560 2941f34e4bfc0c7651f2a1396205909b 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 1.9E-61 T 25-04-2017 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 A4U88_RS23560 2941f34e4bfc0c7651f2a1396205909b 161 SUPERFAMILY SSF89562 2 158 1.57E-43 T 25-04-2017 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein A4U88_RS22780 9307602797a703c1616dd5a9695c8e8e 227 Gene3D G3DSA:3.40.50.2020 48 226 4.0E-33 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS22780 9307602797a703c1616dd5a9695c8e8e 227 Pfam PF00156 Phosphoribosyl transferase domain 184 224 4.3E-8 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS22780 9307602797a703c1616dd5a9695c8e8e 227 SUPERFAMILY SSF53271 49 225 6.16E-39 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS12850 5e164042917278ac8c53ac29bad0d4a3 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 3.7E-37 T 25-04-2017 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 A4U88_RS12850 5e164042917278ac8c53ac29bad0d4a3 108 Pfam PF01253 Translation initiation factor SUI1 32 101 1.6E-19 T 25-04-2017 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 A4U88_RS12850 5e164042917278ac8c53ac29bad0d4a3 108 PIRSF PIRSF037511 1 108 5.4E-35 T 25-04-2017 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 A4U88_RS12850 5e164042917278ac8c53ac29bad0d4a3 108 Gene3D G3DSA:3.30.780.10 28 108 6.0E-35 T 25-04-2017 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 A4U88_RS12850 5e164042917278ac8c53ac29bad0d4a3 108 SUPERFAMILY SSF55159 5 104 7.46E-26 T 25-04-2017 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 SUPERFAMILY SSF55073 287 443 1.26E-23 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 Gene3D G3DSA:3.30.70.270 285 449 1.2E-26 T 25-04-2017 A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 SMART SM00267 270 441 2.4E-17 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 SMART SM00052 451 696 2.5E-95 T 25-04-2017 IPR001633 EAL domain A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 279 439 3.2E-10 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 Pfam PF00990 Diguanylate cyclase, GGDEF domain 285 437 1.2E-19 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 Gene3D G3DSA:3.20.20.450 456 699 2.6E-80 T 25-04-2017 IPR001633 EAL domain A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 Pfam PF00672 HAMP domain 201 271 3.3E-11 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 Pfam PF00563 EAL domain 458 691 5.4E-63 T 25-04-2017 IPR001633 EAL domain A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 74 193 2.0E-58 T 25-04-2017 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 A4U88_RS00500 7bbd59d8e2cd88f67f54a3ffd5e4fe47 706 SUPERFAMILY SSF141868 456 701 4.84E-77 T 25-04-2017 IPR001633 EAL domain A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 Pfam PF00691 OmpA family 94 189 2.6E-24 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 PRINTS PR01021 OMPA domain signature 125 140 1.5E-14 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 PRINTS PR01021 OMPA domain signature 95 117 1.5E-14 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 PRINTS PR01021 OMPA domain signature 140 156 1.5E-14 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 Gene3D G3DSA:3.30.1330.60 74 195 5.5E-41 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 SUPERFAMILY SSF103088 84 195 1.26E-36 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 140 157 5.1E-7 T 25-04-2017 A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 178 198 5.1E-7 T 25-04-2017 A4U88_RS19775 265152742888fc1f0a99bd0a2b0d037a 202 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 158 177 5.1E-7 T 25-04-2017 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 SUPERFAMILY SSF51735 1 195 1.6E-58 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 Gene3D G3DSA:3.40.50.720 235 442 6.7E-75 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 182 1.7E-66 T 25-04-2017 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 PIRSF PIRSF000124 1 439 1.9E-152 T 25-04-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 SUPERFAMILY SSF48179 203 301 1.11E-34 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 SUPERFAMILY SSF52413 310 435 4.19E-40 T 25-04-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 424 9.0E-30 T 25-04-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 Gene3D G3DSA:3.40.50.720 1 206 1.7E-77 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 PIRSF PIRSF500134 1 442 4.2E-194 T 25-04-2017 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 204 295 3.3E-39 T 25-04-2017 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 Gene3D G3DSA:1.20.5.100 207 232 1.2E-17 T 25-04-2017 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 SMART SM00984 320 424 6.3E-51 T 25-04-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS13225 db84addf7374d30984ab3b7730dde420 447 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 420 2.1E-141 T 25-04-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 A4U88_RS07010 99d3454a205abce606d6627f8f7eae53 253 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 75 208 2.6E-19 T 25-04-2017 A4U88_RS07010 99d3454a205abce606d6627f8f7eae53 253 SUPERFAMILY SSF53850 69 222 3.4E-16 T 25-04-2017 A4U88_RS07010 99d3454a205abce606d6627f8f7eae53 253 Gene3D G3DSA:3.40.190.10 84 188 3.9E-5 T 25-04-2017 A4U88_RS12180 6645e8d441742d07e51eb4efe6b6fd51 445 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 445 263.631 T 25-04-2017 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 A4U88_RS12180 6645e8d441742d07e51eb4efe6b6fd51 445 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 9 438 8.9E-218 T 25-04-2017 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 A4U88_RS12180 6645e8d441742d07e51eb4efe6b6fd51 445 Gene3D G3DSA:3.40.50.1100 180 438 1.6E-40 T 25-04-2017 A4U88_RS12180 6645e8d441742d07e51eb4efe6b6fd51 445 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 80 407 4.8E-53 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS12180 6645e8d441742d07e51eb4efe6b6fd51 445 SUPERFAMILY SSF53686 51 438 6.04E-53 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS12180 6645e8d441742d07e51eb4efe6b6fd51 445 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 25-04-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 6.4E-55 T 25-04-2017 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 25-04-2017 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 SUPERFAMILY SSF50249 2 125 1.1E-50 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.8E-34 T 25-04-2017 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 SMART SM01383 42 118 3.6E-48 T 25-04-2017 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 PIRSF PIRSF002158 12 274 1.9E-99 T 25-04-2017 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 Gene3D G3DSA:2.30.30.30 119 195 2.2E-33 T 25-04-2017 IPR014722 Ribosomal protein L2 domain 2 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 SUPERFAMILY SSF50104 127 269 2.71E-59 T 25-04-2017 IPR008991 Translation protein SH3-like domain A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 2.8E-131 T 25-04-2017 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 Gene3D G3DSA:2.40.50.140 1 114 3.5E-51 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.181 T 25-04-2017 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 Gene3D G3DSA:4.10.950.10 196 272 1.9E-34 T 25-04-2017 IPR014726 Ribosomal protein L2, domain 3 A4U88_RS22330 932ab6a0c8856c7aab5f4364f66e334a 274 SMART SM01382 124 251 9.7E-89 T 25-04-2017 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 A4U88_RS20120 0cc51eaf580d189293bbba2c8fea2be9 231 SUPERFAMILY SSF53639 1 223 5.1E-68 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS20120 0cc51eaf580d189293bbba2c8fea2be9 231 SMART SM01007 7 198 6.8E-67 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS20120 0cc51eaf580d189293bbba2c8fea2be9 231 Gene3D G3DSA:3.40.225.10 3 231 1.1E-72 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS20120 0cc51eaf580d189293bbba2c8fea2be9 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 7 196 4.9E-47 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS20120 0cc51eaf580d189293bbba2c8fea2be9 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 1.3E-128 T 25-04-2017 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 Pfam PF13377 Periplasmic binding protein-like domain 168 329 6.4E-33 T 25-04-2017 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 Gene3D G3DSA:3.40.50.2300 58 166 5.3E-46 T 25-04-2017 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 SUPERFAMILY SSF47413 1 59 3.0E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 Gene3D G3DSA:3.40.50.2300 167 330 8.1E-52 T 25-04-2017 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.6E-7 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.6E-7 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 SUPERFAMILY SSF53822 61 331 4.12E-84 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.9E-21 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 Gene3D G3DSA:1.10.260.40 2 57 1.6E-25 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS19510 1cf27ecebeaa137e1c75e354e36b9f31 339 SMART SM00354 1 71 1.8E-36 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 11 96 6.1E-19 T 25-04-2017 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 657 1.9E-275 T 25-04-2017 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 SMART SM00642 167 560 1.3E-6 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 1 659 67.484 T 25-04-2017 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 Gene3D G3DSA:3.20.20.80 149 568 6.0E-107 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 SUPERFAMILY SSF81296 7 144 1.18E-44 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 SUPERFAMILY SSF51445 130 465 2.08E-125 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 SUPERFAMILY SSF51445 494 567 2.08E-125 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS22845 bd1fc5de28a225e15b287a6b0b8648fb 660 Gene3D G3DSA:2.60.40.10 7 148 3.1E-52 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 SUPERFAMILY SSF47729 3 93 1.62E-31 T 25-04-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.102 T 25-04-2017 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 3.5E-54 T 25-04-2017 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.7E-31 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 SMART SM00411 3 92 2.2E-42 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 25-04-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS10510 1fca5457f9efcccc4a300a0c49dda1e6 98 Gene3D G3DSA:4.10.520.10 2 93 4.4E-36 T 25-04-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 A4U88_RS18960 180820a840e2c9e49264feff5ee8e774 314 SMART SM00849 83 288 4.0E-20 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS18960 180820a840e2c9e49264feff5ee8e774 314 Gene3D G3DSA:3.60.15.10 25 308 1.1E-55 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS18960 180820a840e2c9e49264feff5ee8e774 314 Pfam PF00753 Metallo-beta-lactamase superfamily 81 272 3.0E-24 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS18960 180820a840e2c9e49264feff5ee8e774 314 SUPERFAMILY SSF56281 22 309 8.39E-49 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 Pfam PF00072 Response regulator receiver domain 4 115 1.2E-30 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 Gene3D G3DSA:3.40.50.2300 2 119 1.7E-34 T 25-04-2017 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 SMART SM00448 2 115 4.9E-30 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 SUPERFAMILY SSF52172 3 131 2.99E-33 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 1.1E-20 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 SMART SM00421 146 203 1.5E-18 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 7.0E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 7.0E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 7.0E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 SUPERFAMILY SSF46894 136 210 3.23E-19 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS08890 871cd4c3c47621b6959b36e3942bd213 218 Gene3D G3DSA:1.10.10.10 120 210 8.5E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Gene3D G3DSA:3.40.50.300 209 376 2.2E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF12343 Cold shock protein DEAD box A 575 640 3.4E-16 T 25-04-2017 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF00270 DEAD/DEAH box helicase 32 196 9.0E-52 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF03880 DbpA RNA binding domain 487 556 5.0E-20 T 25-04-2017 IPR005580 DbpA, RNA-binding domain A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 25-04-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 SMART SM00490 260 341 1.4E-31 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 SMART SM00487 26 224 1.8E-64 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Pfam PF00271 Helicase conserved C-terminal domain 233 341 2.4E-28 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 558 47.04 T 25-04-2017 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 Gene3D G3DSA:3.40.50.300 7 208 2.4E-81 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01995 c0a5ff64f2ae6b5632a59c158134adb1 640 SUPERFAMILY SSF52540 76 362 9.66E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06045 c94420c4e77ca160e651fa269825d0d3 264 Gene3D G3DSA:1.25.40.10 147 262 3.1E-16 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS06045 c94420c4e77ca160e651fa269825d0d3 264 SUPERFAMILY SSF48452 154 259 2.44E-15 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS06045 c94420c4e77ca160e651fa269825d0d3 264 Pfam PF13174 Tetratricopeptide repeat 220 252 3.4E-8 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS06045 c94420c4e77ca160e651fa269825d0d3 264 Pfam PF13432 Tetratricopeptide repeat 152 216 1.2E-8 T 25-04-2017 A4U88_RS06045 c94420c4e77ca160e651fa269825d0d3 264 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 145 261 1.2E-43 T 25-04-2017 IPR014162 Tol-Pal system, YbgF A4U88_RS06045 c94420c4e77ca160e651fa269825d0d3 264 Pfam PF16331 TolA binding protein trimerisation 37 111 5.1E-24 T 25-04-2017 IPR032519 YbgF, trimerisation domain GO:0070206 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Gene3D G3DSA:3.30.379.10 214 335 1.4E-25 T 25-04-2017 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 SUPERFAMILY SSF55545 205 337 1.07E-26 T 25-04-2017 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Pfam PF03173 Putative carbohydrate binding domain 37 195 2.0E-62 T 25-04-2017 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 SMART SM01081 36 197 4.6E-92 T 25-04-2017 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 SUPERFAMILY SSF81296 782 885 7.14E-40 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 502 520 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 729 745 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 747 764 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 435 452 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 332 349 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 361 382 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 529 542 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 PRINTS PR00738 Glycosyl hydrolase family 20 signature 298 318 1.2E-45 T 25-04-2017 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Gene3D G3DSA:3.20.20.80 336 834 2.8E-154 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 SUPERFAMILY SSF49384 29 199 7.32E-66 T 25-04-2017 IPR008965 Carbohydrate-binding domain GO:0030246 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Gene3D G3DSA:2.60.40.290 29 168 1.8E-56 T 25-04-2017 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 338 765 3.9E-114 T 25-04-2017 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 SUPERFAMILY SSF51445 338 774 1.12E-143 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 806 881 1.2E-32 T 25-04-2017 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 216 334 1.4E-15 T 25-04-2017 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS05810 89341e13fb47508faa66d0e79e71ceed 885 Gene3D G3DSA:2.60.40.320 835 884 1.9E-30 T 25-04-2017 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 201 2.0E-77 T 25-04-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 25-04-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 SUPERFAMILY SSF55620 8 202 1.04E-67 T 25-04-2017 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 Gene3D G3DSA:3.30.1130.10 90 202 1.3E-44 T 25-04-2017 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 Pfam PF01227 GTP cyclohydrolase I 38 201 1.4E-58 T 25-04-2017 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 Gene3D G3DSA:1.10.286.10 4 84 1.3E-30 T 25-04-2017 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 25-04-2017 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 A4U88_RS07555 4708cafa3dff0a490f148b2287046bc7 220 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 218 30.567 T 25-04-2017 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|Reactome: R-HSA-1474151 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 10 317 6.4E-127 T 25-04-2017 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 Gene3D G3DSA:3.20.20.210 10 392 6.2E-152 T 25-04-2017 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 SUPERFAMILY SSF51726 10 397 1.16E-114 T 25-04-2017 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 13 761 0.0 T 25-04-2017 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 434 756 4.4E-157 T 25-04-2017 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 SUPERFAMILY SSF51726 399 761 1.96E-118 T 25-04-2017 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 8 761 37.622 T 25-04-2017 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 Gene3D G3DSA:3.20.20.210 395 760 2.0E-132 T 25-04-2017 A4U88_RS00940 681b6875a80d92acc8b6370a74b9888d 762 PIRSF PIRSF000382 7 762 0.0 T 25-04-2017 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 A4U88_RS03135 4663fa638fcdbeeb6d1a57b5573b5cfb 185 Pfam PF02525 Flavodoxin-like fold 2 166 1.7E-40 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS03135 4663fa638fcdbeeb6d1a57b5573b5cfb 185 SUPERFAMILY SSF52218 2 170 1.89E-48 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS03135 4663fa638fcdbeeb6d1a57b5573b5cfb 185 Hamap MF_01414 Glutathione-regulated potassium-efflux system ancillary protein KefF [kefF]. 1 179 52.322 T 25-04-2017 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 A4U88_RS03135 4663fa638fcdbeeb6d1a57b5573b5cfb 185 Gene3D G3DSA:3.40.50.360 2 169 1.2E-45 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS18295 6637c084764595ba6f40580cfa0fed34 277 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 248 2.4E-28 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS18295 6637c084764595ba6f40580cfa0fed34 277 Gene3D G3DSA:3.90.226.10 4 250 1.5E-43 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS18295 6637c084764595ba6f40580cfa0fed34 277 SUPERFAMILY SSF52096 4 252 1.22E-44 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS15090 46f6043e5f131be049430d7c7c499d0b 159 Gene3D G3DSA:1.10.530.40 21 157 4.0E-54 T 25-04-2017 IPR023347 Lysozyme domain GO:0003796 A4U88_RS15090 46f6043e5f131be049430d7c7c499d0b 159 Pfam PF00959 Phage lysozyme 43 148 4.0E-23 T 25-04-2017 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 A4U88_RS15090 46f6043e5f131be049430d7c7c499d0b 159 SUPERFAMILY SSF53955 9 157 3.94E-53 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS14045 600d5cb56078aaa73a87ad547eb707e4 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 233 1.1E-28 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS14045 600d5cb56078aaa73a87ad547eb707e4 338 SUPERFAMILY SSF51735 298 333 3.55E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14045 600d5cb56078aaa73a87ad547eb707e4 338 SUPERFAMILY SSF51735 1 270 3.55E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14045 600d5cb56078aaa73a87ad547eb707e4 338 Gene3D G3DSA:3.40.50.720 1 325 1.7E-51 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 Gene3D G3DSA:1.10.357.10 3 192 2.7E-46 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 197 85.512 T 25-04-2017 IPR017757 Transcriptional repressor BetI A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 Pfam PF13977 Bacterial transcriptional repressor 85 191 3.5E-28 T 25-04-2017 A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 SUPERFAMILY SSF48498 85 192 3.56E-16 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 5 191 1.4E-67 T 25-04-2017 IPR017757 Transcriptional repressor BetI A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 2.6E-11 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 5.0E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 5.0E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS19735 f5258234f7ee5830302722ee93e3e4c2 198 SUPERFAMILY SSF46689 2 79 7.7E-17 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.7E-33 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 PIRSF PIRSF002599 1 69 5.3E-26 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 Gene3D G3DSA:2.40.50.140 4 67 1.4E-32 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 SMART SM00357 5 69 8.3E-32 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 25-04-2017 IPR019844 Cold-shock conserved site A4U88_RS13825 2455053a6906736a69ca40bce64bc56b 69 SUPERFAMILY SSF50249 3 68 2.06E-26 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22715 fbd9e5901e8142083fb84e699b269c44 87 Gene3D G3DSA:1.10.1220.10 9 43 1.5E-4 T 25-04-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 A4U88_RS22715 fbd9e5901e8142083fb84e699b269c44 87 SUPERFAMILY SSF47598 2 70 5.34E-19 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS21325 e1773b562c10c441969cd17318533855 133 Pfam PF06295 Protein of unknown function (DUF1043) 6 126 2.1E-49 T 25-04-2017 IPR009386 Protein of unknown function DUF1043 A4U88_RS21325 e1773b562c10c441969cd17318533855 133 PIRSF PIRSF006318 1 133 6.7E-52 T 25-04-2017 IPR009386 Protein of unknown function DUF1043 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 Gene3D G3DSA:1.10.150.240 22 82 4.6E-25 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 Gene3D G3DSA:3.40.50.1000 83 222 7.4E-45 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 11 222 8.5E-79 T 25-04-2017 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 7 223 35.777 T 25-04-2017 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 4.6E-11 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 4.6E-11 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 4.6E-11 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 4.6E-11 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 82 192 1.2E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 192 1.2E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 71 187 7.8E-11 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22625 61a7863a7f79a9545e55538d9d351f1d 232 SUPERFAMILY SSF56784 6 222 2.47E-60 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 Gene3D G3DSA:1.25.60.10 49 155 3.8E-20 T 25-04-2017 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 SUPERFAMILY SSF54631 164 303 6.86E-26 T 25-04-2017 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 SUPERFAMILY SSF158791 51 159 1.7E-22 T 25-04-2017 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 Gene3D G3DSA:3.10.580.10 156 286 1.2E-17 T 25-04-2017 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 Pfam PF03448 MgtE intracellular N domain 61 162 2.4E-22 T 25-04-2017 IPR006668 Magnesium transporter, MgtE intracellular domain A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 SMART SM00116 235 283 0.0063 T 25-04-2017 IPR000644 CBS domain A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 TIGRFAM TIGR00400 mgtE: magnesium transporter 51 476 7.6E-79 T 25-04-2017 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 Gene3D G3DSA:1.10.357.20 305 476 8.8E-53 T 25-04-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 SUPERFAMILY SSF161093 305 476 7.59E-49 T 25-04-2017 A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 SMART SM00924 61 164 2.1E-31 T 25-04-2017 IPR006668 Magnesium transporter, MgtE intracellular domain A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 Pfam PF00571 CBS domain 228 282 1.3E-6 T 25-04-2017 IPR000644 CBS domain A4U88_RS18045 57e919c56e7b66b4a6cf0b738cb99ac9 477 Pfam PF01769 Divalent cation transporter 348 470 1.4E-24 T 25-04-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 A4U88_RS01490 8e70769f057ea01975c2754b5e17ee4a 191 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 49 1.4E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS01490 8e70769f057ea01975c2754b5e17ee4a 191 SUPERFAMILY SSF46689 3 67 7.7E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS01490 8e70769f057ea01975c2754b5e17ee4a 191 Gene3D G3DSA:1.10.357.10 3 181 3.4E-20 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS01490 8e70769f057ea01975c2754b5e17ee4a 191 SUPERFAMILY SSF48498 75 179 6.23E-6 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 SUPERFAMILY SSF54197 2 112 4.96E-36 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 25-04-2017 IPR019808 Histidine triad, conserved site A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 Pfam PF01230 HIT domain 12 109 1.6E-30 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 PRINTS PR00332 Histidine triad family signature 27 45 7.9E-20 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 PRINTS PR00332 Histidine triad family signature 6 22 7.9E-20 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 PRINTS PR00332 Histidine triad family signature 95 105 7.9E-20 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS09280 229697675575de7b0124fb7e0a4b4818 116 Gene3D G3DSA:3.30.428.10 3 110 7.0E-38 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS17655 c7e8bc76ac054cf2b95afb1fd9d5bf0e 340 Gene3D G3DSA:3.40.190.10 122 285 1.8E-66 T 25-04-2017 A4U88_RS17655 c7e8bc76ac054cf2b95afb1fd9d5bf0e 340 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 334 5.2E-159 T 25-04-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 A4U88_RS17655 c7e8bc76ac054cf2b95afb1fd9d5bf0e 340 Pfam PF13531 Bacterial extracellular solute-binding protein 51 288 7.1E-41 T 25-04-2017 A4U88_RS17655 c7e8bc76ac054cf2b95afb1fd9d5bf0e 340 SUPERFAMILY SSF53850 27 334 2.76E-79 T 25-04-2017 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 SUPERFAMILY SSF53720 6 481 2.49E-175 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 Gene3D G3DSA:3.40.605.10 9 269 8.2E-104 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 Gene3D G3DSA:3.40.309.10 270 458 6.1E-71 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 Pfam PF00171 Aldehyde dehydrogenase family 22 476 2.7E-172 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS21085 22a64977a6abbff00fbd736106480fba 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 7.0E-220 T 25-04-2017 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 A4U88_RS20180 a58a941e9076400f0f9abdc2a1e5d0de 356 SUPERFAMILY SSF52540 4 248 1.19E-81 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20180 a58a941e9076400f0f9abdc2a1e5d0de 356 SUPERFAMILY SSF50331 243 340 6.8E-8 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS20180 a58a941e9076400f0f9abdc2a1e5d0de 356 Pfam PF00005 ABC transporter 19 167 7.2E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS20180 a58a941e9076400f0f9abdc2a1e5d0de 356 SMART SM00382 28 217 2.3E-16 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS20180 a58a941e9076400f0f9abdc2a1e5d0de 356 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS20180 a58a941e9076400f0f9abdc2a1e5d0de 356 Gene3D G3DSA:3.40.50.300 4 241 3.3E-79 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 Pfam PF01270 Glycosyl hydrolases family 8 11 347 3.9E-97 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 Gene3D G3DSA:1.50.10.10 8 356 1.4E-95 T 25-04-2017 IPR012341 Six-hairpin glycosidase GO:0003824 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 SUPERFAMILY SSF48208 8 352 4.97E-102 T 25-04-2017 IPR008928 Six-hairpin glycosidase-like GO:0003824 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 216 227 1.9E-20 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 1.9E-20 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 1.9E-20 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 180 197 1.9E-20 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 241 250 1.9E-20 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS00490 7fe3fa140f55cb7671bd66ca98df4452 370 PRINTS PR00735 Glycosyl hydrolase family 8 signature 333 347 1.9E-20 T 25-04-2017 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 A4U88_RS19605 346e6068b91a161cf484a627f8bdd2be 183 SUPERFAMILY SSF56349 2 179 2.06E-45 T 25-04-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 A4U88_RS19605 346e6068b91a161cf484a627f8bdd2be 183 Pfam PF00589 Phage integrase family 5 174 1.5E-45 T 25-04-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS19605 346e6068b91a161cf484a627f8bdd2be 183 Gene3D G3DSA:1.10.443.10 5 176 1.2E-41 T 25-04-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS13475 c809ee68fefcfc977976ebc32e8399ad 90 Pfam PF05166 YcgL domain 3 75 4.0E-34 T 25-04-2017 IPR027354 YcgL domain A4U88_RS13475 c809ee68fefcfc977976ebc32e8399ad 90 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.365 T 25-04-2017 IPR027354 YcgL domain A4U88_RS13475 c809ee68fefcfc977976ebc32e8399ad 90 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 81 1.0E-31 T 25-04-2017 IPR027354 YcgL domain A4U88_RS13475 c809ee68fefcfc977976ebc32e8399ad 90 SUPERFAMILY SSF160191 1 85 1.28E-39 T 25-04-2017 A4U88_RS22895 f2c5a41df04d7b555d8625778af05a6e 298 SUPERFAMILY SSF51658 7 295 3.01E-59 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS22895 f2c5a41df04d7b555d8625778af05a6e 298 Hamap MF_01672 Inosose dehydratase [iolE]. 1 298 56.422 T 25-04-2017 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 A4U88_RS22895 f2c5a41df04d7b555d8625778af05a6e 298 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 5 295 1.6E-119 T 25-04-2017 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 A4U88_RS22895 f2c5a41df04d7b555d8625778af05a6e 298 Pfam PF01261 Xylose isomerase-like TIM barrel 36 250 9.7E-26 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS22895 f2c5a41df04d7b555d8625778af05a6e 298 Gene3D G3DSA:3.20.20.150 2 295 2.2E-83 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS13230 3d11a4c14b8f153a439ffec734cdd04c 305 Gene3D G3DSA:3.90.550.10 9 286 8.5E-68 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS13230 3d11a4c14b8f153a439ffec734cdd04c 305 Pfam PF00483 Nucleotidyl transferase 10 278 1.1E-24 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS13230 3d11a4c14b8f153a439ffec734cdd04c 305 SUPERFAMILY SSF53448 8 295 2.93E-61 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS13230 3d11a4c14b8f153a439ffec734cdd04c 305 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 8 277 5.9E-115 T 25-04-2017 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 A4U88_RS11665 4d8a853b3004b9b7177c332b22e094c8 151 Pfam PF07977 FabA-like domain 17 144 4.9E-21 T 25-04-2017 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS11665 4d8a853b3004b9b7177c332b22e094c8 151 SUPERFAMILY SSF54637 8 149 1.19E-32 T 25-04-2017 IPR029069 HotDog domain A4U88_RS11665 4d8a853b3004b9b7177c332b22e094c8 151 Gene3D G3DSA:3.10.129.10 6 149 6.9E-37 T 25-04-2017 IPR029069 HotDog domain A4U88_RS05505 fa83ba42cdc3df522129d96a4ef58fe5 183 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 25-04-2017 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 A4U88_RS05505 fa83ba42cdc3df522129d96a4ef58fe5 183 SUPERFAMILY SSF52218 1 182 1.83E-44 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS05505 fa83ba42cdc3df522129d96a4ef58fe5 183 Pfam PF03358 NADPH-dependent FMN reductase 35 113 5.6E-10 T 25-04-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 A4U88_RS05505 fa83ba42cdc3df522129d96a4ef58fe5 183 Gene3D G3DSA:3.40.50.360 1 182 1.3E-58 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08285 b66be3c89500d88a0796582661487d51 246 Pfam PF04055 Radical SAM superfamily 24 178 1.7E-29 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS08285 b66be3c89500d88a0796582661487d51 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 25-04-2017 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 A4U88_RS08285 b66be3c89500d88a0796582661487d51 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 5.2E-104 T 25-04-2017 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 A4U88_RS08285 b66be3c89500d88a0796582661487d51 246 SUPERFAMILY SSF102114 23 213 8.44E-22 T 25-04-2017 A4U88_RS08285 b66be3c89500d88a0796582661487d51 246 Pfam PF13353 4Fe-4S single cluster domain 16 136 5.0E-18 T 25-04-2017 A4U88_RS08285 b66be3c89500d88a0796582661487d51 246 Gene3D G3DSA:3.80.30.10 69 246 5.5E-67 T 25-04-2017 A4U88_RS22015 d0ac6d0cd2dc8f041af433930e3ddc67 559 Gene3D G3DSA:3.10.20.310 76 154 1.8E-16 T 25-04-2017 A4U88_RS22015 d0ac6d0cd2dc8f041af433930e3ddc67 559 Gene3D G3DSA:2.40.160.50 183 559 1.0E-89 T 25-04-2017 A4U88_RS22015 d0ac6d0cd2dc8f041af433930e3ddc67 559 PIRSF PIRSF029745 1 559 4.1E-127 T 25-04-2017 IPR027282 Two partner secretion pathway transporter GO:0015031 A4U88_RS22015 d0ac6d0cd2dc8f041af433930e3ddc67 559 Pfam PF08479 POTRA domain, ShlB-type 81 154 1.6E-19 T 25-04-2017 IPR013686 Polypeptide-transport-associated, ShlB-type A4U88_RS22015 d0ac6d0cd2dc8f041af433930e3ddc67 559 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 162 559 1.1E-146 T 25-04-2017 IPR005565 Haemolysin activator HlyB A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 1.1E-22 T 25-04-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 54.216 T 25-04-2017 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 28.525 T 25-04-2017 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 25-04-2017 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 PIRSF PIRSF006092 1 157 1.6E-46 T 25-04-2017 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 6.0E-27 T 25-04-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 SUPERFAMILY SSF54534 80 155 7.06E-20 T 25-04-2017 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 Gene3D G3DSA:3.10.50.30 76 155 1.5E-27 T 25-04-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 157 1.5E-83 T 25-04-2017 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 Gene3D G3DSA:1.10.287.180 2 75 5.9E-27 T 25-04-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 A4U88_RS22745 9fa4515c2263fc704c1c8e2ccd867c15 157 SUPERFAMILY SSF46557 4 78 4.19E-28 T 25-04-2017 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 SUPERFAMILY SSF46955 1 126 9.89E-37 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 Pfam PF00376 MerR family regulatory protein 2 39 1.2E-17 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 Pfam PF09278 MerR, DNA binding 44 108 5.3E-18 T 25-04-2017 IPR015358 Transcription regulator MerR, DNA binding A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 4.4E-53 T 25-04-2017 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 Gene3D G3DSA:1.10.1660.10 56 131 6.6E-28 T 25-04-2017 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 Gene3D G3DSA:1.10.1660.10 1 55 1.4E-23 T 25-04-2017 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 8.4E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 8.4E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 8.4E-10 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS12050 64c7bdd9bccc5ae21b5f847ff05a8f37 156 SMART SM00422 1 70 2.6E-27 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 Gene3D G3DSA:3.50.50.60 3 278 1.3E-40 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.7E-28 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.7E-28 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.7E-28 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.7E-28 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.7E-28 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.7E-28 T 25-04-2017 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 Pfam PF01266 FAD dependent oxidoreductase 5 323 4.8E-47 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 SUPERFAMILY SSF51905 312 375 2.1E-36 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 SUPERFAMILY SSF51905 3 260 2.1E-36 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 SUPERFAMILY SSF54373 226 319 5.89E-8 T 25-04-2017 A4U88_RS22825 48c0e9e36250a9d79a14b2a220d6f79f 502 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 483 2.0E-11 T 25-04-2017 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-535734 A4U88_RS00575 814d951942fa437d39b690471148c94b 242 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 236 5.9E-85 T 25-04-2017 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315 A4U88_RS00575 814d951942fa437d39b690471148c94b 242 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 44 236 44.804 T 25-04-2017 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 KEGG: 00071+2.3.1.21|MetaCyc: PWY-6111|MetaCyc: PWY-7315 A4U88_RS00575 814d951942fa437d39b690471148c94b 242 SUPERFAMILY SSF55729 46 232 1.36E-26 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS00575 814d951942fa437d39b690471148c94b 242 Pfam PF00583 Acetyltransferase (GNAT) family 153 224 3.0E-11 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS00575 814d951942fa437d39b690471148c94b 242 Gene3D G3DSA:3.40.630.30 91 233 6.6E-23 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 SUPERFAMILY SSF51735 1 174 2.21E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 PIRSF PIRSF000149 1 337 9.0E-130 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 Gene3D G3DSA:3.40.50.720 1 163 1.4E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 25-04-2017 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 SMART SM00846 3 155 2.1E-79 T 25-04-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 4.5E-52 T 25-04-2017 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 155 1.4E-50 T 25-04-2017 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 64.649 T 25-04-2017 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 SUPERFAMILY SSF55347 155 317 9.82E-56 T 25-04-2017 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 4.2E-185 T 25-04-2017 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.6E-29 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.6E-29 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.6E-29 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.6E-29 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.6E-29 T 25-04-2017 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS20175 fb3afdfb0fb4dcbdd08513d556247c90 338 Gene3D G3DSA:3.30.360.10 164 318 2.9E-59 T 25-04-2017 A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 143 171 - T 25-04-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 SMART SM00257 420 464 2.3E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 SMART SM00257 366 410 2.1E-13 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 Gene3D G3DSA:1.10.530.10 119 279 2.8E-47 T 25-04-2017 A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 Gene3D G3DSA:3.10.350.10 418 464 9.5E-16 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 Gene3D G3DSA:3.10.350.10 366 409 1.5E-17 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 SUPERFAMILY SSF54106 419 464 5.49E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 SUPERFAMILY SSF54106 365 409 2.75E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 Pfam PF01464 Transglycosylase SLT domain 125 236 2.8E-28 T 25-04-2017 IPR008258 Transglycosylase SLT domain 1 A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 SUPERFAMILY SSF53955 121 273 9.85E-41 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 Pfam PF01476 LysM domain 367 409 9.3E-12 T 25-04-2017 IPR018392 LysM domain A4U88_RS03965 9a685573e100bff8ccc5c5654781f59f 473 Pfam PF01476 LysM domain 421 462 1.4E-8 T 25-04-2017 IPR018392 LysM domain A4U88_RS23435 8421c151168c375dea83966f9b542823 367 SUPERFAMILY SSF53335 6 365 1.0E-52 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS23435 8421c151168c375dea83966f9b542823 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 25-04-2017 IPR030390 RNA methyltransferase TrmA, active site A4U88_RS23435 8421c151168c375dea83966f9b542823 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 11 365 1.1E-186 T 25-04-2017 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 A4U88_RS23435 8421c151168c375dea83966f9b542823 367 Gene3D G3DSA:3.40.50.150 157 364 1.2E-43 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS23435 8421c151168c375dea83966f9b542823 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.574 T 25-04-2017 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 A4U88_RS23435 8421c151168c375dea83966f9b542823 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 365 2.8E-186 T 25-04-2017 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 A4U88_RS23435 8421c151168c375dea83966f9b542823 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 25-04-2017 IPR030391 RNA methyltransferase TrmA, conserved site A4U88_RS04985 edfbc6426f46c720a319d0c8fa5d6cde 232 Pfam PF06508 Queuosine biosynthesis protein QueC 3 214 4.7E-82 T 25-04-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 A4U88_RS04985 edfbc6426f46c720a319d0c8fa5d6cde 232 SUPERFAMILY SSF52402 1 216 1.65E-65 T 25-04-2017 A4U88_RS04985 edfbc6426f46c720a319d0c8fa5d6cde 232 PIRSF PIRSF006293 1 226 1.7E-84 T 25-04-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 A4U88_RS04985 edfbc6426f46c720a319d0c8fa5d6cde 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 220 50.435 T 25-04-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 A4U88_RS04985 edfbc6426f46c720a319d0c8fa5d6cde 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 207 8.2E-85 T 25-04-2017 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 A4U88_RS04985 edfbc6426f46c720a319d0c8fa5d6cde 232 Gene3D G3DSA:3.40.50.620 1 218 2.3E-82 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 SMART SM00248 108 137 9.2 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 SMART SM00248 75 104 59.0 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 SMART SM00248 142 171 1.1 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 SMART SM00248 175 204 0.015 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 Pfam PF00023 Ankyrin repeat 176 206 0.0012 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 Gene3D G3DSA:1.25.40.20 44 209 3.1E-30 T 25-04-2017 IPR020683 Ankyrin repeat-containing domain A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 Pfam PF12796 Ankyrin repeats (3 copies) 80 173 5.7E-11 T 25-04-2017 IPR020683 Ankyrin repeat-containing domain A4U88_RS18690 013d0e0ba3f58d2d17e3c56c2c51121a 251 SUPERFAMILY SSF48403 47 218 6.97E-33 T 25-04-2017 IPR020683 Ankyrin repeat-containing domain A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 SUPERFAMILY SSF51735 8 164 1.14E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 Gene3D G3DSA:3.40.50.720 11 150 2.3E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 14 137 9.5E-17 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 Gene3D G3DSA:3.30.360.10 294 424 7.3E-30 T 25-04-2017 A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 Gene3D G3DSA:3.30.360.10 151 227 7.3E-30 T 25-04-2017 A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 149 226 1.5E-8 T 25-04-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 SUPERFAMILY SSF55347 284 368 4.91E-26 T 25-04-2017 A4U88_RS12465 2e80281df63f9e65b4c0605054744386 427 SUPERFAMILY SSF55347 145 228 4.91E-26 T 25-04-2017 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 SUPERFAMILY SSF54719 95 204 2.88E-46 T 25-04-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 1.2E-27 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.2E-27 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 1.2E-27 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.2E-27 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 PRINTS PR01703 Manganese superoxide dismutase signature 166 178 1.2E-27 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 168 175 - T 25-04-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 97 201 2.6E-41 T 25-04-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 SUPERFAMILY SSF46609 1 90 1.96E-36 T 25-04-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 PIRSF PIRSF000349 1 206 1.9E-80 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 Gene3D G3DSA:1.10.287.990 20 90 2.2E-32 T 25-04-2017 A4U88_RS00190 f4f446d5f3b883ff89cee43de86223e2 206 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 90 3.3E-32 T 25-04-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 Gene3D G3DSA:3.30.1220.10 222 316 1.7E-30 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 SMART SM00833 226 317 7.8E-10 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 226 317 6.8E-19 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 SUPERFAMILY SSF52540 2 202 6.8E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 Gene3D G3DSA:3.40.50.300 2 201 2.2E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 182 9.1E-48 T 25-04-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain A4U88_RS02395 dd38e0ece69f9ec1d39ce9b7018374c5 317 SUPERFAMILY SSF90002 226 316 2.62E-24 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 577 706 2.8E-47 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 SUPERFAMILY SSF53383 110 567 5.46E-119 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 104 2.7E-18 T 25-04-2017 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 SUPERFAMILY SSF55904 572 720 6.54E-47 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 351 365 - T 25-04-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 720 0.0 T 25-04-2017 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 110 550 3.6E-194 T 25-04-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Gene3D G3DSA:3.90.100.10 595 721 4.2E-38 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Gene3D G3DSA:3.40.50.220 1 109 4.0E-30 T 25-04-2017 IPR027464 Ornithine decarboxylase, N-terminal domain KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Gene3D G3DSA:3.90.1150.10 422 594 5.1E-71 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 Gene3D G3DSA:3.40.640.10 110 420 2.6E-115 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 SUPERFAMILY SSF52172 1 109 1.99E-29 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS20640 18ed786d0813c65dcba9d756216a25f5 721 PIRSF PIRSF009393 1 721 3.6E-290 T 25-04-2017 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 A4U88_RS08375 ff1ff564cb380fa2d343597f4a87587c 249 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 2.2E-123 T 25-04-2017 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 A4U88_RS08375 ff1ff564cb380fa2d343597f4a87587c 249 SUPERFAMILY SSF53448 3 244 8.11E-68 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS08375 ff1ff564cb380fa2d343597f4a87587c 249 Pfam PF02348 Cytidylyltransferase 4 221 4.6E-69 T 25-04-2017 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 A4U88_RS08375 ff1ff564cb380fa2d343597f4a87587c 249 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 46.054 T 25-04-2017 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 A4U88_RS08375 ff1ff564cb380fa2d343597f4a87587c 249 Gene3D G3DSA:3.90.550.10 1 245 2.0E-86 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS00030 15dcfd68b1a8c2332da114cc46100b98 313 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 14 310 6.6E-63 T 25-04-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 A4U88_RS00030 15dcfd68b1a8c2332da114cc46100b98 313 SUPERFAMILY SSF51735 1 311 4.49E-78 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00030 15dcfd68b1a8c2332da114cc46100b98 313 PIRSF PIRSF001439 1 313 1.4E-58 T 25-04-2017 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 A4U88_RS00030 15dcfd68b1a8c2332da114cc46100b98 313 Gene3D G3DSA:3.30.1780.10 1 138 1.9E-36 T 25-04-2017 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 A4U88_RS00030 15dcfd68b1a8c2332da114cc46100b98 313 Gene3D G3DSA:3.40.50.720 139 297 3.0E-46 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22010 988da4261e14d3b8bdb8924e495d153d 305 Pfam PF01758 Sodium Bile acid symporter family 36 213 6.9E-40 T 25-04-2017 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 A4U88_RS09630 2a40ebe4f05a666dbd46aaf39f88907b 446 SUPERFAMILY SSF49401 266 444 2.92E-8 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS09630 2a40ebe4f05a666dbd46aaf39f88907b 446 Gene3D G3DSA:2.60.40.1090 266 441 5.5E-8 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS09630 2a40ebe4f05a666dbd46aaf39f88907b 446 PIRSF PIRSF029766 19 446 7.8E-130 T 25-04-2017 IPR011228 Uncharacterised conserved protein UCP029766 A4U88_RS09630 2a40ebe4f05a666dbd46aaf39f88907b 446 Pfam PF00419 Fimbrial protein 262 446 8.2E-24 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Gene3D G3DSA:3.30.460.10 178 324 1.3E-47 T 25-04-2017 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Pfam PF02824 TGS domain 390 449 9.1E-21 T 25-04-2017 IPR004095 TGS KEGG: 00970+6.1.1.3 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Pfam PF13328 HD domain 26 175 1.2E-54 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 SUPERFAMILY SSF109604 3 190 1.38E-75 T 25-04-2017 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 SMART SM00471 41 153 5.9E-12 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 SUPERFAMILY SSF81271 377 449 8.07E-21 T 25-04-2017 IPR012676 TGS-like KEGG: 00970+6.1.1.3 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 SUPERFAMILY SSF81301 192 366 1.8E-62 T 25-04-2017 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 SUPERFAMILY SSF55021 630 700 4.4E-5 T 25-04-2017 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 2.1E-36 T 25-04-2017 IPR007685 RelA/SpoT GO:0015969 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Gene3D G3DSA:3.30.70.260 628 698 1.5E-6 T 25-04-2017 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 SMART SM00954 235 345 8.0E-63 T 25-04-2017 IPR007685 RelA/SpoT GO:0015969 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Pfam PF13291 ACT domain 623 700 1.7E-17 T 25-04-2017 IPR002912 ACT domain GO:0008152|GO:0016597 A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 Gene3D G3DSA:3.10.20.30 389 450 3.5E-22 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS23865 6ac1f3e04b3a43fb5a76a2b7a7e4c164 703 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 700 3.1E-287 T 25-04-2017 IPR004811 RelA/SpoT family GO:0015969 A4U88_RS01870 c959b01c014f2eaf6e39669d2bd2b7f3 323 Pfam PF00348 Polyprenyl synthetase 31 262 1.8E-74 T 25-04-2017 IPR000092 Polyprenyl synthetase GO:0008299 A4U88_RS01870 c959b01c014f2eaf6e39669d2bd2b7f3 323 SUPERFAMILY SSF48576 5 322 1.25E-100 T 25-04-2017 IPR008949 Isoprenoid synthase domain A4U88_RS01870 c959b01c014f2eaf6e39669d2bd2b7f3 323 Gene3D G3DSA:1.10.600.10 3 322 1.8E-103 T 25-04-2017 IPR008949 Isoprenoid synthase domain A4U88_RS01870 c959b01c014f2eaf6e39669d2bd2b7f3 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 25-04-2017 IPR000092 Polyprenyl synthetase GO:0008299 A4U88_RS01870 c959b01c014f2eaf6e39669d2bd2b7f3 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 25-04-2017 IPR000092 Polyprenyl synthetase GO:0008299 A4U88_RS17235 23f9c63b065206d9f0e0871e1d1cc026 404 SUPERFAMILY SSF48452 160 268 1.43E-20 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS17235 23f9c63b065206d9f0e0871e1d1cc026 404 Pfam PF14559 Tetratricopeptide repeat 174 241 7.5E-12 T 25-04-2017 A4U88_RS17235 23f9c63b065206d9f0e0871e1d1cc026 404 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 2 111 1.6E-27 T 25-04-2017 IPR017560 Cytochrome c-type biogenesis protein CcmI A4U88_RS17235 23f9c63b065206d9f0e0871e1d1cc026 404 Gene3D G3DSA:1.25.40.10 153 202 5.7E-5 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS17235 23f9c63b065206d9f0e0871e1d1cc026 404 Gene3D G3DSA:1.25.40.10 203 283 1.6E-26 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS02675 6cd0b28a2ac49b1096420c431c71e150 210 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 3 203 5.1E-79 T 25-04-2017 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 A4U88_RS02675 6cd0b28a2ac49b1096420c431c71e150 210 SUPERFAMILY SSF56529 2 204 1.27E-52 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02675 6cd0b28a2ac49b1096420c431c71e150 210 Gene3D G3DSA:3.90.850.10 3 205 1.1E-51 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02675 6cd0b28a2ac49b1096420c431c71e150 210 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 5 203 3.8E-39 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 SMART SM00079 22 243 1.4E-4 T 25-04-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 Gene3D G3DSA:3.40.190.10 110 201 1.0E-29 T 25-04-2017 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 3.7E-73 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 SMART SM00062 22 241 2.2E-87 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 Gene3D G3DSA:3.40.190.10 20 108 1.1E-46 T 25-04-2017 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 Gene3D G3DSA:3.40.190.10 203 242 1.1E-46 T 25-04-2017 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 SUPERFAMILY SSF53850 1 242 3.2E-74 T 25-04-2017 A4U88_RS08115 37adc8def365d72b71d8a39c72463983 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 241 1.8E-92 T 25-04-2017 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 A4U88_RS02155 908391360a2a65eb3e3175dfb746334e 154 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 153 1.5E-61 T 25-04-2017 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 A4U88_RS02155 908391360a2a65eb3e3175dfb746334e 154 Pfam PF13353 4Fe-4S single cluster domain 12 151 4.4E-50 T 25-04-2017 A4U88_RS02155 908391360a2a65eb3e3175dfb746334e 154 SUPERFAMILY SSF102114 24 110 2.35E-6 T 25-04-2017 A4U88_RS02155 908391360a2a65eb3e3175dfb746334e 154 Gene3D G3DSA:3.20.20.70 24 129 8.4E-8 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS02155 908391360a2a65eb3e3175dfb746334e 154 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 25-04-2017 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 A4U88_RS02155 908391360a2a65eb3e3175dfb746334e 154 PIRSF PIRSF000368 1 154 1.9E-58 T 25-04-2017 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 A4U88_RS14075 5d13b0d0daf1bdde1856c48588c3e35a 619 Gene3D G3DSA:3.20.20.80 298 441 3.7E-5 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS14075 5d13b0d0daf1bdde1856c48588c3e35a 619 SUPERFAMILY SSF49785 24 164 1.72E-6 T 25-04-2017 IPR008979 Galactose-binding domain-like A4U88_RS14075 5d13b0d0daf1bdde1856c48588c3e35a 619 SUPERFAMILY SSF51445 271 448 4.12E-10 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS14075 5d13b0d0daf1bdde1856c48588c3e35a 619 Gene3D G3DSA:2.60.120.260 23 165 1.7E-10 T 25-04-2017 IPR008979 Galactose-binding domain-like A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 Gene3D G3DSA:1.20.1280.20 81 170 4.7E-28 T 25-04-2017 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020 A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 Gene3D G3DSA:1.10.287.110 1 73 1.6E-25 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 24.867 T 25-04-2017 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 3.8E-50 T 25-04-2017 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 Reactome: R-HSA-1268020 A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 163 4.6E-15 T 25-04-2017 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020 A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 SMART SM00271 1 66 2.3E-9 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 SUPERFAMILY SSF46565 1 75 4.45E-18 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS18435 16ebf9054805ce714e36e9010277c8df 173 SUPERFAMILY SSF47144 78 171 7.32E-24 T 25-04-2017 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020 A4U88_RS21725 1dfba5ee84949b059e6a22fd99cbef38 306 PIRSF PIRSF026649 2 306 6.3E-96 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS21725 1dfba5ee84949b059e6a22fd99cbef38 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 1.2E-99 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS21725 1dfba5ee84949b059e6a22fd99cbef38 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 50.312 T 25-04-2017 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 A4U88_RS21725 1dfba5ee84949b059e6a22fd99cbef38 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 306 68.852 T 25-04-2017 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 KEGG: 00600+2.3.1.24 A4U88_RS21725 1dfba5ee84949b059e6a22fd99cbef38 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 3.2E-136 T 25-04-2017 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 ProSitePatterns PS00213 Lipocalin signature. 34 45 - T 25-04-2017 IPR022272 Lipocalin family conserved site A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PIRSF PIRSF036893 1 177 8.4E-48 T 25-04-2017 IPR022271 Lipocalin, ApoD type A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 Pfam PF08212 Lipocalin-like domain 34 173 1.1E-46 T 25-04-2017 IPR000566 Lipocalin/cytosolic fatty-acid binding domain A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 SUPERFAMILY SSF50814 11 176 4.36E-50 T 25-04-2017 IPR011038 Calycin-like A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 Gene3D G3DSA:2.40.128.20 9 174 2.5E-57 T 25-04-2017 IPR012674 Calycin A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 50 66 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 69 78 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 103 117 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 120 128 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 162 172 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 33 47 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS01565 d92c76972371e9f9d4d2818186d83587 177 PRINTS PR01171 Bacterial lipocalin signature 135 146 8.2E-43 T 25-04-2017 IPR002446 Lipocalin, bacterial GO:0005215 A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 PRINTS PR00625 DnaJ domain signature 227 242 1.2E-6 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 PRINTS PR00625 DnaJ domain signature 251 271 1.2E-6 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 PRINTS PR00625 DnaJ domain signature 209 227 1.2E-6 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 Pfam PF05099 Tellurite resistance protein TerB 42 172 5.2E-13 T 25-04-2017 IPR007791 Co-chaperone DjlA, N-terminal A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 SUPERFAMILY SSF46565 133 269 1.05E-29 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 Gene3D G3DSA:1.10.287.110 211 269 2.4E-13 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 272 39.318 T 25-04-2017 IPR023749 Co-chaperone DjlA GO:0051087 A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 SMART SM00271 206 271 7.2E-16 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 Pfam PF00226 DnaJ domain 210 269 5.0E-10 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS03200 821d2b07a7e7e9eb36c6c140b6790cb5 273 Gene3D G3DSA:1.10.3680.10 22 210 8.5E-28 T 25-04-2017 IPR029024 TerB-like A4U88_RS08485 326f1632ed26410cf36e291fbe218285 182 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 178 40.085 T 25-04-2017 IPR009809 Cell division protein ZapC A4U88_RS08485 326f1632ed26410cf36e291fbe218285 182 Pfam PF07126 Cell-division protein ZapC 2 170 1.0E-74 T 25-04-2017 IPR009809 Cell division protein ZapC A4U88_RS08485 326f1632ed26410cf36e291fbe218285 182 PIRSF PIRSF010252 1 178 3.7E-64 T 25-04-2017 IPR009809 Cell division protein ZapC A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 422 3.9E-5 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 447 3.9E-5 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 SMART SM00304 194 247 5.1E-11 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 SUPERFAMILY SSF55874 318 470 9.04E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 451 1.8E-14 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 SMART SM00388 248 314 1.7E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 249 313 1.3E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 SMART SM00387 357 472 2.7E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 Gene3D G3DSA:1.10.287.130 238 310 9.7E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 SUPERFAMILY SSF47384 231 312 1.73E-15 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 Gene3D G3DSA:3.30.565.10 316 470 3.6E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 SUPERFAMILY SSF158472 195 244 3.01E-7 T 25-04-2017 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 Pfam PF00672 HAMP domain 175 243 3.0E-13 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS07315 f35783e3814251e08a631937ee68c22a 472 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 9 455 2.1E-143 T 25-04-2017 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 A4U88_RS00915 780f1e0975f9aca69b12cd2f089e8740 245 SUPERFAMILY SSF51695 6 240 9.42E-64 T 25-04-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 A4U88_RS00915 780f1e0975f9aca69b12cd2f089e8740 245 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 239 1.2E-39 T 25-04-2017 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 A4U88_RS00915 780f1e0975f9aca69b12cd2f089e8740 245 Gene3D G3DSA:3.20.20.190 3 241 1.0E-62 T 25-04-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 Pfam PF00186 Dihydrofolate reductase 3 159 1.5E-59 T 25-04-2017 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 PIRSF PIRSF000194 1 160 1.4E-59 T 25-04-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 Gene3D G3DSA:3.40.430.10 1 160 2.1E-60 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 SUPERFAMILY SSF53597 1 160 1.57E-57 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 25-04-2017 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-113510|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-69205 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.1E-14 T 25-04-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.1E-14 T 25-04-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.1E-14 T 25-04-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 A4U88_RS03160 edad982727652203e5d5723763bf6f63 160 PRINTS PR00070 Dihydrofolate reductase signature 91 105 1.1E-14 T 25-04-2017 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 Gene3D G3DSA:3.40.47.10 151 199 5.8E-58 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 Gene3D G3DSA:3.40.47.10 283 400 5.8E-58 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 Pfam PF02803 Thiolase, C-terminal domain 277 400 1.7E-44 T 25-04-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 3 401 3.1E-212 T 25-04-2017 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 25-04-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 ProSitePatterns PS00737 Thiolases signature 2. 347 363 - T 25-04-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 Gene3D G3DSA:3.40.47.10 200 282 1.6E-65 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 Gene3D G3DSA:3.40.47.10 4 125 1.6E-65 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 1.9E-132 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 Pfam PF00108 Thiolase, N-terminal domain 5 268 6.8E-74 T 25-04-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 ProSitePatterns PS00099 Thiolases active site. 382 395 - T 25-04-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 PIRSF PIRSF000429 1 401 1.2E-125 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 SUPERFAMILY SSF53901 277 400 2.47E-44 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS15305 e0d6138d03aa3c421de4a092f42a99de 401 SUPERFAMILY SSF53901 4 276 5.89E-76 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02240 9f251f2337b9d4b6166d816cbc7b46a5 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 439 7.2E-71 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS02240 9f251f2337b9d4b6166d816cbc7b46a5 522 Gene3D G3DSA:3.10.105.10 296 490 1.1E-36 T 25-04-2017 A4U88_RS02240 9f251f2337b9d4b6166d816cbc7b46a5 522 PIRSF PIRSF002741 2 519 1.3E-68 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS02240 9f251f2337b9d4b6166d816cbc7b46a5 522 SUPERFAMILY SSF53850 21 517 6.15E-101 T 25-04-2017 A4U88_RS02240 9f251f2337b9d4b6166d816cbc7b46a5 522 Gene3D G3DSA:3.40.190.10 140 295 3.9E-32 T 25-04-2017 A4U88_RS10125 fd826b3ef2732108ff488b2d77a83ee9 267 SUPERFAMILY SSF53187 4 261 1.24E-79 T 25-04-2017 A4U88_RS10125 fd826b3ef2732108ff488b2d77a83ee9 267 Pfam PF05013 N-formylglutamate amidohydrolase 15 232 5.5E-67 T 25-04-2017 IPR007709 N-formylglutamate amidohydrolase A4U88_RS10125 fd826b3ef2732108ff488b2d77a83ee9 267 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 7 264 3.6E-116 T 25-04-2017 IPR010247 N-formylglutamate deformylase A4U88_RS10125 fd826b3ef2732108ff488b2d77a83ee9 267 Gene3D G3DSA:3.40.630.40 6 261 1.5E-89 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 Pfam PF07664 Ferrous iron transport protein B C terminus 456 508 1.6E-21 T 25-04-2017 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 Pfam PF07670 Nucleoside recognition 354 444 8.6E-13 T 25-04-2017 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 Pfam PF07670 Nucleoside recognition 513 690 2.8E-36 T 25-04-2017 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 Gene3D G3DSA:3.40.50.300 3 170 2.1E-34 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 688 8.0E-225 T 25-04-2017 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 SUPERFAMILY SSF52540 4 170 5.83E-39 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22760 67a0cf4552c76b61791ae238761c3d7d 771 Pfam PF02421 Ferrous iron transport protein B 5 162 1.2E-62 T 25-04-2017 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 Gene3D G3DSA:2.150.10.10 272 474 4.2E-33 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 PRINTS PR00313 NodO calcium binding signature 346 357 3.4E-12 T 25-04-2017 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 PRINTS PR00313 NodO calcium binding signature 367 375 3.4E-12 T 25-04-2017 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 PRINTS PR00313 NodO calcium binding signature 376 384 3.4E-12 T 25-04-2017 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 PRINTS PR00313 NodO calcium binding signature 385 394 3.4E-12 T 25-04-2017 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 Pfam PF08548 Peptidase M10 serralysin C terminal 264 487 5.7E-85 T 25-04-2017 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 372 390 - T 25-04-2017 IPR018511 Hemolysin-type calcium-binding conserved site A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 PIRSF PIRSF001205 2 487 3.9E-232 T 25-04-2017 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 Gene3D G3DSA:3.40.390.10 39 265 4.1E-54 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 SUPERFAMILY SSF51120 264 485 3.66E-50 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 SUPERFAMILY SSF55486 20 262 1.54E-84 T 25-04-2017 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 SMART SM00235 72 248 3.6E-33 T 25-04-2017 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 A4U88_RS00800 fc8287edf60d1a15fccf97b56413f5a8 487 Pfam PF00413 Matrixin 99 206 6.0E-9 T 25-04-2017 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 A4U88_RS23905 3bf0c2160c0a10c9ba2dff624cda2ba6 297 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 4 283 23.654 T 25-04-2017 IPR023679 Uncharacterised protein family UPF0761, bacterial A4U88_RS23905 3bf0c2160c0a10c9ba2dff624cda2ba6 297 Pfam PF03631 Virulence factor BrkB 30 276 1.0E-58 T 25-04-2017 IPR017039 Virulence factor BrkB A4U88_RS23905 3bf0c2160c0a10c9ba2dff624cda2ba6 297 PIRSF PIRSF035875 1 297 8.3E-67 T 25-04-2017 IPR017039 Virulence factor BrkB A4U88_RS23905 3bf0c2160c0a10c9ba2dff624cda2ba6 297 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 277 8.4E-95 T 25-04-2017 IPR017039 Virulence factor BrkB A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 SUPERFAMILY SSF52540 268 482 4.39E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 SMART SM00382 278 473 1.8E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 SMART SM00382 30 218 9.4E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 Pfam PF00005 ABC transporter 21 170 3.6E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 Pfam PF00005 ABC transporter 270 424 7.0E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 SUPERFAMILY SSF52540 4 231 1.54E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 Gene3D G3DSA:3.40.50.300 269 486 1.4E-50 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09520 02c9ae51fc724ab6e07a257bcbe45a7a 494 Gene3D G3DSA:3.40.50.300 5 234 2.1E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04555 f39fa380a87c2b2ff37de3afa0ca652e 267 Gene3D G3DSA:1.10.260.40 6 86 1.7E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS04555 f39fa380a87c2b2ff37de3afa0ca652e 267 SUPERFAMILY SSF47413 35 86 2.37E-8 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS04555 f39fa380a87c2b2ff37de3afa0ca652e 267 Pfam PF13560 Helix-turn-helix domain 11 90 1.2E-17 T 25-04-2017 A4U88_RS04555 f39fa380a87c2b2ff37de3afa0ca652e 267 SMART SM00530 15 87 1.5E-7 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS18825 dcdf59d025cf83901edff0e4a2839729 166 SUPERFAMILY SSF55729 3 151 2.23E-36 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18825 dcdf59d025cf83901edff0e4a2839729 166 Gene3D G3DSA:3.40.630.30 1 157 2.5E-58 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18825 dcdf59d025cf83901edff0e4a2839729 166 Pfam PF00583 Acetyltransferase (GNAT) family 58 137 9.5E-18 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 594 620 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 425 438 - T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 SUPERFAMILY SSF88659 474 547 1.6E-20 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 397 622 3.8E-38 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Gene3D G3DSA:1.10.10.10 565 634 1.1E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Gene3D G3DSA:1.10.601.10 134 470 4.9E-139 T 25-04-2017 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 SUPERFAMILY SSF88659 531 633 2.45E-25 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Pfam PF04546 Sigma-70, non-essential region 161 370 1.3E-74 T 25-04-2017 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 397 633 8.4E-121 T 25-04-2017 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 SUPERFAMILY SSF88946 137 468 1.44E-102 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Pfam PF03979 Sigma-70 factor, region 1.1 26 103 2.1E-30 T 25-04-2017 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Pfam PF04545 Sigma-70, region 4 569 622 9.3E-19 T 25-04-2017 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Pfam PF00140 Sigma-70 factor, region 1.2 120 150 1.5E-12 T 25-04-2017 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Pfam PF04539 Sigma-70 region 3 480 555 3.6E-29 T 25-04-2017 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Gene3D G3DSA:1.10.10.10 474 525 1.9E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 26 634 46.675 T 25-04-2017 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 PRINTS PR00046 Major sigma-70 factor signature 425 438 7.4E-31 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 PRINTS PR00046 Major sigma-70 factor signature 449 457 7.4E-31 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 PRINTS PR00046 Major sigma-70 factor signature 609 620 7.4E-31 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 PRINTS PR00046 Major sigma-70 factor signature 594 609 7.4E-31 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 PRINTS PR00046 Major sigma-70 factor signature 573 585 7.4E-31 T 25-04-2017 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21025 a12e76e1c35c022e03e7ff31e0b27826 635 Pfam PF04542 Sigma-70 region 2 401 470 1.8E-21 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS13105 bf4aa189cbc64c075e234390e3889915 184 SUPERFAMILY SSF51182 52 168 6.58E-6 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS14210 603b0c83416c2e628e53ff49a5484a6d 272 Gene3D G3DSA:2.40.30.10 9 129 2.9E-30 T 25-04-2017 A4U88_RS14210 603b0c83416c2e628e53ff49a5484a6d 272 Pfam PF04954 Siderophore-interacting protein 137 253 1.2E-33 T 25-04-2017 IPR007037 Siderophore-interacting protein A4U88_RS14210 603b0c83416c2e628e53ff49a5484a6d 272 Pfam PF08021 Siderophore-interacting FAD-binding domain 16 130 2.8E-36 T 25-04-2017 IPR013113 FAD-binding 9, siderophore-interacting A4U88_RS14210 603b0c83416c2e628e53ff49a5484a6d 272 SUPERFAMILY SSF63380 7 135 2.27E-12 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS14210 603b0c83416c2e628e53ff49a5484a6d 272 Gene3D G3DSA:3.40.50.80 134 270 2.9E-42 T 25-04-2017 A4U88_RS24235 fbf6061dbe94316f612964b7f1aea3ab 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.764 T 25-04-2017 IPR002696 Putative membrane protein insertion efficiency factor A4U88_RS24235 fbf6061dbe94316f612964b7f1aea3ab 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 83 5.3E-32 T 25-04-2017 IPR002696 Putative membrane protein insertion efficiency factor A4U88_RS24235 fbf6061dbe94316f612964b7f1aea3ab 85 Pfam PF01809 Haemolytic domain 10 75 2.3E-29 T 25-04-2017 IPR002696 Putative membrane protein insertion efficiency factor A4U88_RS24235 fbf6061dbe94316f612964b7f1aea3ab 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 75 3.0E-23 T 25-04-2017 IPR002696 Putative membrane protein insertion efficiency factor A4U88_RS24235 fbf6061dbe94316f612964b7f1aea3ab 85 SMART SM01234 8 75 5.2E-44 T 25-04-2017 IPR002696 Putative membrane protein insertion efficiency factor A4U88_RS13760 16f321c0f9fd46095dc9b6418f2d7f38 333 Pfam PF00535 Glycosyl transferase family 2 6 131 1.0E-31 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS13760 16f321c0f9fd46095dc9b6418f2d7f38 333 Gene3D G3DSA:3.90.550.10 4 205 7.3E-50 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS13760 16f321c0f9fd46095dc9b6418f2d7f38 333 SUPERFAMILY SSF53448 5 229 6.66E-49 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS15595 f8187b13c2ea4cf5e77654b690549131 156 SMART SM00347 38 139 2.6E-12 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS15595 f8187b13c2ea4cf5e77654b690549131 156 Pfam PF12802 MarR family 44 103 2.4E-11 T 25-04-2017 A4U88_RS15595 f8187b13c2ea4cf5e77654b690549131 156 Gene3D G3DSA:1.10.10.10 9 154 1.1E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15595 f8187b13c2ea4cf5e77654b690549131 156 SUPERFAMILY SSF46785 17 154 9.1E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 1.0E-45 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 1.0E-45 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 1.0E-45 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 1.0E-45 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 1.0E-45 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 Pfam PF00248 Aldo/keto reductase family 9 250 2.4E-52 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 SUPERFAMILY SSF51430 2 257 2.1E-81 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 25-04-2017 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 A4U88_RS03945 475ca0959628ef663142a5b8151a9c4d 267 Gene3D G3DSA:3.20.20.100 1 259 1.8E-89 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS11900 388061311215cb9c5435b363f2656168 391 Gene3D G3DSA:3.30.360.10 163 385 3.5E-26 T 25-04-2017 A4U88_RS11900 388061311215cb9c5435b363f2656168 391 SUPERFAMILY SSF51735 8 174 3.63E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11900 388061311215cb9c5435b363f2656168 391 SUPERFAMILY SSF55347 148 327 2.29E-27 T 25-04-2017 A4U88_RS11900 388061311215cb9c5435b363f2656168 391 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 12 143 1.2E-28 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS11900 388061311215cb9c5435b363f2656168 391 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 155 278 1.0E-19 T 25-04-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS11900 388061311215cb9c5435b363f2656168 391 Gene3D G3DSA:3.40.50.720 9 162 1.7E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12025 8ecb0d914c4470d50c949b9f3b88313a 189 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 188 5.8E-53 T 25-04-2017 IPR006286 Peptidase C56, PfpI A4U88_RS12025 8ecb0d914c4470d50c949b9f3b88313a 189 Pfam PF01965 DJ-1/PfpI family 4 185 1.2E-48 T 25-04-2017 IPR002818 DJ-1/PfpI A4U88_RS12025 8ecb0d914c4470d50c949b9f3b88313a 189 SUPERFAMILY SSF52317 4 187 2.72E-49 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS12025 8ecb0d914c4470d50c949b9f3b88313a 189 Gene3D G3DSA:3.40.50.880 4 187 5.5E-59 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS10315 8618ce7a37b6494aff6d579eaa8639db 261 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS10315 8618ce7a37b6494aff6d579eaa8639db 261 SUPERFAMILY SSF52540 4 224 3.33E-49 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10315 8618ce7a37b6494aff6d579eaa8639db 261 Pfam PF00005 ABC transporter 19 160 5.8E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10315 8618ce7a37b6494aff6d579eaa8639db 261 Gene3D G3DSA:3.40.50.300 4 222 3.7E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10315 8618ce7a37b6494aff6d579eaa8639db 261 SMART SM00382 28 211 8.6E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19205 d537e0f9c565bc7ef31dd7463191faa0 197 Pfam PF01351 Ribonuclease HII 14 190 3.2E-39 T 25-04-2017 IPR024567 Ribonuclease HII/HIII domain A4U88_RS19205 d537e0f9c565bc7ef31dd7463191faa0 197 SUPERFAMILY SSF53098 5 195 2.28E-68 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS19205 d537e0f9c565bc7ef31dd7463191faa0 197 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.255 T 25-04-2017 IPR022898 Ribonuclease HII GO:0004523 A4U88_RS19205 d537e0f9c565bc7ef31dd7463191faa0 197 Gene3D G3DSA:3.30.420.10 12 152 9.3E-48 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS22085 c523dc7374dbd37d5e4cb59b3c92a1d2 213 Gene3D G3DSA:3.20.20.70 4 210 3.1E-78 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS22085 c523dc7374dbd37d5e4cb59b3c92a1d2 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 2.8E-86 T 25-04-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS22085 c523dc7374dbd37d5e4cb59b3c92a1d2 213 SUPERFAMILY SSF51569 4 209 1.57E-69 T 25-04-2017 A4U88_RS22085 c523dc7374dbd37d5e4cb59b3c92a1d2 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 25-04-2017 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS22085 c523dc7374dbd37d5e4cb59b3c92a1d2 213 Pfam PF01081 KDPG and KHG aldolase 9 203 1.1E-89 T 25-04-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS22085 c523dc7374dbd37d5e4cb59b3c92a1d2 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 25-04-2017 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS16420 1f36dfe29153449d3d7a375be0c5f1d7 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 504 7.2E-69 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS16420 1f36dfe29153449d3d7a375be0c5f1d7 602 PIRSF PIRSF002741 6 593 1.1E-136 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS16420 1f36dfe29153449d3d7a375be0c5f1d7 602 SUPERFAMILY SSF53850 50 591 9.59E-107 T 25-04-2017 A4U88_RS16420 1f36dfe29153449d3d7a375be0c5f1d7 602 Gene3D G3DSA:3.90.76.10 93 173 6.1E-12 T 25-04-2017 A4U88_RS16420 1f36dfe29153449d3d7a375be0c5f1d7 602 Gene3D G3DSA:3.40.190.10 174 320 4.1E-29 T 25-04-2017 A4U88_RS16420 1f36dfe29153449d3d7a375be0c5f1d7 602 Gene3D G3DSA:3.10.105.10 321 560 1.2E-47 T 25-04-2017 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 SUPERFAMILY SSF142019 94 303 4.84E-59 T 25-04-2017 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 SUPERFAMILY SSF46548 336 443 1.52E-20 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 9.2E-47 T 25-04-2017 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 Pfam PF13237 4Fe-4S dicluster domain 373 427 4.3E-9 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 2.2E-183 T 25-04-2017 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 1.8E-32 T 25-04-2017 IPR026902 RnfC Barrel sandwich hybrid domain A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 Pfam PF10531 SLBB domain 296 344 1.2E-10 T 25-04-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 Gene3D G3DSA:1.10.1060.10 329 445 8.3E-20 T 25-04-2017 A4U88_RS11000 778e5da20ec90038775b54592ddca70b 733 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 733 262.087 T 25-04-2017 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 A4U88_RS23175 5b9e350d1aa74fa29a1e9d3887302f59 248 Gene3D G3DSA:3.40.1630.10 2 56 1.0E-27 T 25-04-2017 A4U88_RS23175 5b9e350d1aa74fa29a1e9d3887302f59 248 SUPERFAMILY SSF53335 4 246 1.73E-76 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS23175 5b9e350d1aa74fa29a1e9d3887302f59 248 Pfam PF04445 Putative SAM-dependent methyltransferase 19 246 8.0E-109 T 25-04-2017 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 A4U88_RS23175 5b9e350d1aa74fa29a1e9d3887302f59 248 Gene3D G3DSA:3.40.50.150 57 247 4.6E-75 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS23175 5b9e350d1aa74fa29a1e9d3887302f59 248 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 248 38.437 T 25-04-2017 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 SUPERFAMILY SSF48179 186 292 2.04E-21 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 181 1.1E-52 T 25-04-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 Gene3D G3DSA:3.40.50.720 7 188 5.4E-46 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 Gene3D G3DSA:1.10.1040.10 189 285 6.9E-20 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 PIRSF PIRSF000105 2 306 9.0E-81 T 25-04-2017 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 284 4.8E-19 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS02495 51937569a637fc3ce6bdf73ee7a8f9e0 307 SUPERFAMILY SSF51735 6 181 8.45E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 250 276 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 318 330 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 1.1E-53 T 25-04-2017 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 124 5.9E-22 T 25-04-2017 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 361 383 7.5E-8 T 25-04-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 7.5E-8 T 25-04-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 7.5E-8 T 25-04-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 7.5E-8 T 25-04-2017 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 Pfam PF00361 Proton-conducting membrane transporter 136 428 3.2E-96 T 25-04-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16820 77a91015e7b6ea2073b32c080d91600a 615 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 612 2.8E-232 T 25-04-2017 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 SUPERFAMILY SSF52518 371 566 7.56E-70 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 SUPERFAMILY SSF52467 188 362 1.02E-61 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 Gene3D G3DSA:3.40.50.970 2 177 2.7E-76 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 SUPERFAMILY SSF52518 2 181 6.2E-67 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 170 1.6E-60 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 Gene3D G3DSA:3.40.50.970 358 556 5.1E-79 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 2.2E-46 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 Gene3D G3DSA:3.40.50.1220 189 357 7.1E-67 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 567 1.8E-279 T 25-04-2017 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 A4U88_RS03295 d3664ffaf224c44c297519306350a163 572 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 543 1.5E-51 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 SUPERFAMILY SSF56327 172 434 1.69E-90 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 PRINTS PR00732 Glycosyl hydrolase family 4 signature 166 177 2.4E-43 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 Gene3D G3DSA:3.40.50.720 2 169 1.3E-61 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 410 1.1E-52 T 25-04-2017 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 171 - T 25-04-2017 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 SUPERFAMILY SSF51735 3 169 2.05E-49 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 Gene3D G3DSA:3.90.110.10 170 434 1.6E-100 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS22575 52b988290e71d21d58bd30acc5277223 435 Pfam PF02056 Family 4 glycosyl hydrolase 5 186 1.9E-54 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 SMART SM00640 31 432 1.3E-129 T 25-04-2017 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 SUPERFAMILY SSF49899 338 467 4.19E-17 T 25-04-2017 IPR013320 Concanavalin A-like lectin/glucanase domain A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 SUPERFAMILY SSF75005 22 336 1.0E-105 T 25-04-2017 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 Gene3D G3DSA:2.60.120.560 320 447 2.2E-16 T 25-04-2017 IPR013189 Glycosyl hydrolase family 32, C-terminal A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 18 442 4.7E-155 T 25-04-2017 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 Gene3D G3DSA:2.115.10.20 39 319 1.9E-17 T 25-04-2017 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 31 44 - T 25-04-2017 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 A4U88_RS20760 44ccb8769facec714b96aa2813f2960e 469 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 31 336 1.1E-98 T 25-04-2017 IPR013148 Glycosyl hydrolase family 32, N-terminal A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 25-04-2017 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 Gene3D G3DSA:1.10.1200.80 252 321 1.4E-17 T 25-04-2017 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 PIRSF PIRSF006621 1 328 4.4E-102 T 25-04-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 Gene3D G3DSA:3.20.20.70 8 244 6.9E-82 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.129 T 25-04-2017 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 5.2E-115 T 25-04-2017 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 SUPERFAMILY SSF51395 11 319 2.93E-88 T 25-04-2017 A4U88_RS21705 9a3cc262ebaa78c3304f1fedbcba8281 334 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 1.7E-135 T 25-04-2017 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 SUPERFAMILY SSF47741 71 147 2.09E-28 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 Gene3D G3DSA:3.10.20.30 1 72 1.6E-29 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 57 6.6E-8 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 Pfam PF01799 [2Fe-2S] binding domain 71 141 1.9E-25 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 Gene3D G3DSA:1.10.150.120 73 147 4.8E-28 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS06640 14d032601ce103558e06feed455f1ed0 150 SUPERFAMILY SSF54292 2 76 3.15E-25 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 Pfam PF00330 Aconitase family (aconitate hydratase) 74 562 4.2E-184 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 Gene3D G3DSA:3.30.499.10 21 249 3.2E-78 T 25-04-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 431 442 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 493 506 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 279 292 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 170 178 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 217 232 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 293 306 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 203 216 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 372 386 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 PRINTS PR00415 Aconitase family signature 146 159 4.2E-42 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 890 0.0 T 25-04-2017 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 Gene3D G3DSA:3.40.1060.10 250 366 4.6E-35 T 25-04-2017 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 Gene3D G3DSA:3.20.19.10 636 889 4.3E-83 T 25-04-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 25-04-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 Pfam PF00694 Aconitase C-terminal domain 691 818 4.1E-50 T 25-04-2017 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 SUPERFAMILY SSF53732 10 626 2.62E-221 T 25-04-2017 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 25-04-2017 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 Gene3D G3DSA:3.30.499.10 368 575 1.4E-63 T 25-04-2017 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS12940 064b9ad2fc4c24a1b5a8de0a2515b7d2 890 SUPERFAMILY SSF52016 630 890 2.16E-90 T 25-04-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel A4U88_RS21740 62ad6b6f81134eaa939a50c94a1106be 229 Pfam PF04172 LrgB-like family 14 224 2.2E-71 T 25-04-2017 IPR007300 CidB/LrgB family A4U88_RS24210 271f76eff174f739813e93600d12b7e3 188 SUPERFAMILY SSF52218 7 180 1.86E-45 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS24210 271f76eff174f739813e93600d12b7e3 188 Gene3D G3DSA:3.40.50.360 3 187 1.1E-51 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS24210 271f76eff174f739813e93600d12b7e3 188 Pfam PF03358 NADPH-dependent FMN reductase 7 149 3.5E-40 T 25-04-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 A4U88_RS03140 4bcb18ec116615c097fd2f254fa6aef2 617 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 286 7.8E-89 T 25-04-2017 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 A4U88_RS03140 4bcb18ec116615c097fd2f254fa6aef2 617 SUPERFAMILY SSF51735 402 530 2.56E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03140 4bcb18ec116615c097fd2f254fa6aef2 617 Pfam PF02254 TrkA-N domain 403 513 7.0E-25 T 25-04-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 A4U88_RS03140 4bcb18ec116615c097fd2f254fa6aef2 617 Gene3D G3DSA:3.40.50.720 395 531 2.1E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03140 4bcb18ec116615c097fd2f254fa6aef2 617 Hamap MF_01413 Glutathione-regulated potassium-efflux system protein KefC [kefC]. 1 608 55.254 T 25-04-2017 IPR023941 Glutathione-regulated potassium-efflux system protein KefC GO:0005887|GO:0006813|GO:0015503|GO:0015643|GO:0019899|GO:0051595 A4U88_RS03140 4bcb18ec116615c097fd2f254fa6aef2 617 Pfam PF00999 Sodium/hydrogen exchanger family 12 375 6.8E-63 T 25-04-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 SUPERFAMILY SSF56014 429 561 3.93E-35 T 25-04-2017 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Gene3D G3DSA:3.90.480.10 74 146 4.3E-63 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Gene3D G3DSA:3.90.480.10 342 423 4.3E-63 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 431 557 0.022 T 25-04-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 173 329 2.0E-47 T 25-04-2017 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 PRINTS PR00397 Sirohaem Fe-binding site signature 478 496 1.4E-8 T 25-04-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 PRINTS PR00397 Sirohaem Fe-binding site signature 430 448 1.4E-8 T 25-04-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 SUPERFAMILY SSF55124 14 142 1.54E-26 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Gene3D G3DSA:3.30.413.10 430 558 2.1E-32 T 25-04-2017 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Gene3D G3DSA:3.30.413.10 150 340 1.3E-71 T 25-04-2017 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 355 416 3.1E-14 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 80 139 5.9E-14 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 10 571 58.647 T 25-04-2017 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 SUPERFAMILY SSF55124 346 424 6.05E-22 T 25-04-2017 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 478 494 - T 25-04-2017 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 SUPERFAMILY SSF56014 150 344 2.62E-60 T 25-04-2017 A4U88_RS03590 c1df307bc396cc44623407b8c9b77c87 571 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 19 559 6.7E-294 T 25-04-2017 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 A4U88_RS22395 52a002fc6db4e738ca27f9485d0871b5 129 Pfam PF02635 DsrE/DsrF-like family 4 129 2.9E-28 T 25-04-2017 IPR003787 Sulphur relay, DsrE/F-like protein A4U88_RS22395 52a002fc6db4e738ca27f9485d0871b5 129 SUPERFAMILY SSF75169 1 129 1.69E-37 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS22395 52a002fc6db4e738ca27f9485d0871b5 129 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 2 129 40.481 T 25-04-2017 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 A4U88_RS22395 52a002fc6db4e738ca27f9485d0871b5 129 Gene3D G3DSA:3.40.1260.10 3 129 1.1E-28 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS22395 52a002fc6db4e738ca27f9485d0871b5 129 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 4 129 2.7E-55 T 25-04-2017 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 A4U88_RS10805 35af612cf369be2d53a483155791f235 206 Pfam PF16925 Bacterial transcriptional repressor C-terminal 93 194 4.1E-11 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS10805 35af612cf369be2d53a483155791f235 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 65 9.0E-9 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS10805 35af612cf369be2d53a483155791f235 206 SUPERFAMILY SSF48498 87 202 7.23E-25 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS10805 35af612cf369be2d53a483155791f235 206 SUPERFAMILY SSF46689 15 85 7.7E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS10805 35af612cf369be2d53a483155791f235 206 Gene3D G3DSA:1.10.357.10 15 201 4.4E-37 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 SUPERFAMILY SSF51445 2 469 2.56E-162 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 Gene3D G3DSA:3.20.20.80 2 474 1.5E-150 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 25-04-2017 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 438 450 1.5E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 1.5E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 1.5E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 413 430 1.5E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 402 1.5E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 Pfam PF00232 Glycosyl hydrolase family 1 2 473 4.7E-133 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS12175 3c16dfc7e4dc253fd7a51262880a6d48 476 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 25-04-2017 IPR018120 Glycoside hydrolase family 1, active site A4U88_RS17985 10aa8cda9f887adc3ee83df38d344b22 209 SUPERFAMILY SSF53271 5 207 1.08E-66 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS17985 10aa8cda9f887adc3ee83df38d344b22 209 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 3 209 44.253 T 25-04-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 A4U88_RS17985 10aa8cda9f887adc3ee83df38d344b22 209 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 209 7.2E-91 T 25-04-2017 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 A4U88_RS17985 10aa8cda9f887adc3ee83df38d344b22 209 Gene3D G3DSA:3.40.50.2020 3 209 9.0E-75 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS17985 10aa8cda9f887adc3ee83df38d344b22 209 Pfam PF14681 Uracil phosphoribosyltransferase 8 208 1.2E-64 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS13930 fae49ee199680b0a23125738bba5b263 327 SUPERFAMILY SSF53187 1 318 1.95E-85 T 25-04-2017 A4U88_RS13930 fae49ee199680b0a23125738bba5b263 327 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 45 319 2.0E-62 T 25-04-2017 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 A4U88_RS13930 fae49ee199680b0a23125738bba5b263 327 Gene3D G3DSA:3.40.630.10 33 233 1.0E-17 T 25-04-2017 A4U88_RS13930 fae49ee199680b0a23125738bba5b263 327 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 327 142.725 T 25-04-2017 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 A4U88_RS13930 fae49ee199680b0a23125738bba5b263 327 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 318 9.4E-133 T 25-04-2017 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 A4U88_RS13930 fae49ee199680b0a23125738bba5b263 327 PIRSF PIRSF017020 1 326 3.4E-116 T 25-04-2017 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 A4U88_RS12650 bb2393b6a33cfdbc299e2afd2b694052 363 SUPERFAMILY SSF53474 60 108 8.36E-7 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12650 bb2393b6a33cfdbc299e2afd2b694052 363 SUPERFAMILY SSF53474 307 349 8.36E-7 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12650 bb2393b6a33cfdbc299e2afd2b694052 363 SUPERFAMILY SSF53474 145 207 8.36E-7 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12650 bb2393b6a33cfdbc299e2afd2b694052 363 Gene3D G3DSA:3.40.50.1820 24 219 2.5E-31 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12650 bb2393b6a33cfdbc299e2afd2b694052 363 Gene3D G3DSA:3.40.50.1820 251 348 2.5E-31 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 1.3E-12 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 1.3E-12 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 1.3E-12 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 Pfam PF00210 Ferritin-like domain 30 166 1.9E-24 T 25-04-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 PIRSF PIRSF005900 8 167 9.0E-42 T 25-04-2017 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 44.243 T 25-04-2017 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 Gene3D G3DSA:1.20.1260.10 2 167 4.0E-52 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 SUPERFAMILY SSF47240 10 167 7.78E-49 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS07220 a90af0177f1cd0eb0a231735b497f77c 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 25-04-2017 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 Gene3D G3DSA:3.30.450.40 100 275 5.7E-52 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 SUPERFAMILY SSF55781 99 276 3.79E-45 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 SUPERFAMILY SSF46785 34 105 1.2E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 Gene3D G3DSA:1.10.10.10 24 92 2.9E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 30 274 5.8E-91 T 25-04-2017 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 Pfam PF01614 Bacterial transcriptional regulator 150 273 6.2E-33 T 25-04-2017 IPR014757 Transcription regulator IclR, C-terminal A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 Pfam PF09339 IclR helix-turn-helix domain 35 82 4.0E-14 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS14830 584e7ef8a9ec5233d98e72a6f3da562d 277 SMART SM00346 33 122 3.5E-24 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 257 454 31.485 T 25-04-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 259 449 3.2E-57 T 25-04-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 SUPERFAMILY SSF51366 5 254 1.53E-84 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 Gene3D G3DSA:3.20.20.70 5 260 2.0E-103 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 Pfam PF00218 Indole-3-glycerol phosphate synthase 7 253 2.2E-97 T 25-04-2017 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 SUPERFAMILY SSF51366 259 452 3.14E-58 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 5 256 35.769 T 25-04-2017 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 52 70 - T 25-04-2017 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 A4U88_RS13025 9eb84d02e15090cf3e81b4d6c80ea06f 454 Gene3D G3DSA:3.20.20.70 261 447 2.2E-62 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS21865 4a3912f2ce17d32cf60bb0e65ae8dafc 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 2 65 5.2E-26 T 25-04-2017 IPR014318 Phage shock protein, PspG A4U88_RS21865 4a3912f2ce17d32cf60bb0e65ae8dafc 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 1.3E-26 T 25-04-2017 IPR014318 Phage shock protein, PspG A4U88_RS21080 a737c2374e2b8612577ea3ed5e45a29f 413 Pfam PF03222 Tryptophan/tyrosine permease family 23 377 1.4E-31 T 25-04-2017 IPR018227 Tryptophan/tyrosine permease GO:0003333 A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 Gene3D G3DSA:3.40.50.150 248 433 2.1E-45 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 Gene3D G3DSA:3.40.50.150 165 208 2.1E-45 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 SUPERFAMILY SSF53335 5 544 1.23E-117 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 Pfam PF12161 HsdM N-terminal domain 6 133 1.1E-12 T 25-04-2017 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 Pfam PF02384 N-6 DNA Methylase 142 510 1.2E-59 T 25-04-2017 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 162 178 7.6E-20 T 25-04-2017 A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 188 202 7.6E-20 T 25-04-2017 A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 330 354 7.6E-20 T 25-04-2017 A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 300 312 7.6E-20 T 25-04-2017 A4U88_RS02325 485e73e7e5187413d2b8c8119862197a 544 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS11055 9c74473403ee3dec6d74eac904d1fefd 393 SUPERFAMILY SSF53383 1 384 1.75E-87 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS11055 9c74473403ee3dec6d74eac904d1fefd 393 Gene3D G3DSA:3.90.1150.10 239 383 1.0E-50 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS11055 9c74473403ee3dec6d74eac904d1fefd 393 Pfam PF00155 Aminotransferase class I and II 30 381 8.7E-55 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS11055 9c74473403ee3dec6d74eac904d1fefd 393 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 384 1.1E-114 T 25-04-2017 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 A4U88_RS11055 9c74473403ee3dec6d74eac904d1fefd 393 Gene3D G3DSA:3.40.640.10 44 238 5.2E-44 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 25-04-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 Gene3D G3DSA:3.40.50.720 120 297 2.3E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 SUPERFAMILY SSF52283 7 138 3.19E-49 T 25-04-2017 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 SUPERFAMILY SSF55021 337 411 2.52E-18 T 25-04-2017 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 Gene3D G3DSA:3.30.70.260 324 411 1.2E-28 T 25-04-2017 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 SUPERFAMILY SSF51735 108 295 1.93E-59 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 5.1E-38 T 25-04-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 2.2E-52 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS20040 db9920d9b2124814785352a12bda175f 412 Gene3D G3DSA:3.40.50.720 8 119 3.1E-35 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 SMART SM00354 5 75 5.1E-25 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 Gene3D G3DSA:3.40.50.2300 174 330 1.2E-43 T 25-04-2017 A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 307 2.0E-29 T 25-04-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 25-04-2017 A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 SUPERFAMILY SSF53822 63 317 2.36E-58 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 Gene3D G3DSA:3.40.50.2300 62 173 2.0E-39 T 25-04-2017 A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 2.3E-16 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 SUPERFAMILY SSF47413 5 62 2.25E-13 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS22875 c806e52d3efc534c0f243305e6fc026e 331 Gene3D G3DSA:1.10.260.40 4 59 7.0E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS05690 75097b2dcc0d9b58ed86c2d013a8b1bb 509 SUPERFAMILY SSF56317 216 488 9.03E-40 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS05690 75097b2dcc0d9b58ed86c2d013a8b1bb 509 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 456 1.3E-107 T 25-04-2017 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 A4U88_RS05690 75097b2dcc0d9b58ed86c2d013a8b1bb 509 Pfam PF00795 Carbon-nitrogen hydrolase 224 475 4.6E-39 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS05690 75097b2dcc0d9b58ed86c2d013a8b1bb 509 Gene3D G3DSA:3.60.110.10 216 486 4.1E-21 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS05690 75097b2dcc0d9b58ed86c2d013a8b1bb 509 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 494 24.091 T 25-04-2017 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SUPERFAMILY SSF50249 35 197 1.59E-50 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:3.30.56.10 155 183 1.1E-27 T 25-04-2017 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:3.30.56.10 1 38 1.1E-27 T 25-04-2017 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SUPERFAMILY SSF56037 195 394 2.88E-76 T 25-04-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SUPERFAMILY SSF54991 696 794 2.48E-30 T 25-04-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:2.40.50.140 42 154 8.3E-46 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.312 T 25-04-2017 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:3.30.70.380 703 794 4.9E-31 T 25-04-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SUPERFAMILY SSF46955 403 475 5.4E-21 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:3.30.56.20 402 475 6.6E-29 T 25-04-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SMART SM00874 403 471 5.8E-32 T 25-04-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:3.50.40.10 197 392 7.1E-85 T 25-04-2017 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SMART SM00896 701 794 3.6E-44 T 25-04-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.0E-28 T 25-04-2017 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 2.8E-289 T 25-04-2017 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Pfam PF01588 Putative tRNA binding domain 45 145 6.0E-27 T 25-04-2017 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Pfam PF03483 B3/4 domain 212 385 7.8E-70 T 25-04-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SUPERFAMILY SSF55681 467 690 2.24E-55 T 25-04-2017 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Gene3D G3DSA:3.30.930.10 495 690 5.0E-66 T 25-04-2017 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 SMART SM00873 212 385 5.7E-98 T 25-04-2017 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 A4U88_RS10505 8aec321e6a5c2926078b8147015716fe 795 Pfam PF03484 tRNA synthetase B5 domain 405 471 3.2E-20 T 25-04-2017 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 PRINTS PR00969 Pili chaperone signature 25 34 2.6E-23 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 PRINTS PR00969 Pili chaperone signature 129 144 2.6E-23 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 PRINTS PR00969 Pili chaperone signature 168 183 2.6E-23 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 PRINTS PR00969 Pili chaperone signature 74 95 2.6E-23 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 PRINTS PR00969 Pili chaperone signature 102 119 2.6E-23 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 Gene3D G3DSA:2.60.40.360 24 148 4.4E-34 T 25-04-2017 IPR008962 PapD-like A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 Gene3D G3DSA:2.60.40.1070 151 240 8.3E-10 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 25 147 1.2E-33 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 SUPERFAMILY SSF49354 21 147 1.6E-33 T 25-04-2017 IPR008962 PapD-like A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 101 118 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 174 240 3.4E-10 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS09625 2d58d915bacefa5f38333e3dc790b71f 249 SUPERFAMILY SSF49584 141 241 6.93E-10 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS22570 e2ca9e3550e38230ad4434eec6720818 112 SUPERFAMILY SSF46973 7 104 1.57E-31 T 25-04-2017 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 A4U88_RS22570 e2ca9e3550e38230ad4434eec6720818 112 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 11 103 5.1E-30 T 25-04-2017 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 A4U88_RS22570 e2ca9e3550e38230ad4434eec6720818 112 PIRSF PIRSF000699 1 109 3.5E-30 T 25-04-2017 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 A4U88_RS22570 e2ca9e3550e38230ad4434eec6720818 112 Gene3D G3DSA:1.20.58.80 7 104 2.0E-34 T 25-04-2017 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 SMART SM00963 1 86 2.2E-36 T 25-04-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 9.9E-179 T 25-04-2017 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 SMART SM00382 99 247 1.1E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 SUPERFAMILY SSF47446 298 431 4.32E-46 T 25-04-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Gene3D G3DSA:3.40.50.300 94 297 5.5E-79 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Gene3D G3DSA:1.20.120.140 2 88 4.6E-35 T 25-04-2017 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 8.1E-75 T 25-04-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 25-04-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Gene3D G3DSA:1.10.260.30 329 432 7.8E-40 T 25-04-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Pfam PF02978 Signal peptide binding domain 329 427 4.0E-32 T 25-04-2017 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 2.8E-22 T 25-04-2017 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 SMART SM00962 100 296 1.9E-116 T 25-04-2017 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.875 T 25-04-2017 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 A4U88_RS03825 e7f3c858d48d05adcdc39db7e32a8b4a 453 SUPERFAMILY SSF52540 42 353 1.15E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08595 fd02c23964905ed814a34c450e11eb41 137 Gene3D G3DSA:3.40.50.720 2 135 8.8E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08595 fd02c23964905ed814a34c450e11eb41 137 SUPERFAMILY SSF51735 2 135 1.22E-45 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08595 fd02c23964905ed814a34c450e11eb41 137 Pfam PF13380 CoA binding domain 14 130 1.4E-40 T 25-04-2017 IPR003781 CoA-binding GO:0048037 A4U88_RS08595 fd02c23964905ed814a34c450e11eb41 137 SMART SM00881 10 104 5.3E-27 T 25-04-2017 IPR003781 CoA-binding GO:0048037 A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 126 288 1.2E-55 T 25-04-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 SUPERFAMILY SSF82866 79 302 7.98E-43 T 25-04-2017 A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 Gene3D G3DSA:1.20.1640.10 136 304 7.2E-29 T 25-04-2017 A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 Pfam PF07549 SecD/SecF GG Motif 41 66 1.4E-10 T 25-04-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 17 302 28.409 T 25-04-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 44 59 1.2E-32 T 25-04-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 159 173 1.2E-32 T 25-04-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 207 225 1.2E-32 T 25-04-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 239 254 1.2E-32 T 25-04-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 45 291 2.4E-89 T 25-04-2017 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 A4U88_RS04805 2c138c0bf6491f86b93245300125231e 322 Pfam PF02355 Protein export membrane protein 117 300 6.5E-72 T 25-04-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial A4U88_RS07950 271ec88401d860b1257b9bebf4202bc3 844 Pfam PF13954 PapC N-terminal domain 36 181 9.0E-41 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS07950 271ec88401d860b1257b9bebf4202bc3 844 SUPERFAMILY SSF141729 35 155 6.15E-31 T 25-04-2017 A4U88_RS07950 271ec88401d860b1257b9bebf4202bc3 844 Pfam PF13953 PapC C-terminal domain 758 817 1.2E-15 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS07950 271ec88401d860b1257b9bebf4202bc3 844 Pfam PF00577 Outer membrane usher protein 197 746 1.2E-191 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS07950 271ec88401d860b1257b9bebf4202bc3 844 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 314 324 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 93 101 - T 25-04-2017 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 Hamap MF_00258 Glutamate racemase [murI]. 26 278 34.795 T 25-04-2017 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 SUPERFAMILY SSF53681 131 283 4.14E-33 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 204 214 - T 25-04-2017 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 Pfam PF01177 Asp/Glu/Hydantoin racemase 30 239 4.7E-25 T 25-04-2017 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 SUPERFAMILY SSF53681 28 129 5.1E-32 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 TIGRFAM TIGR00067 glut_race: glutamate racemase 28 272 1.5E-86 T 25-04-2017 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23425 9fd242c549a99a3175c3c05564006cce 287 Gene3D G3DSA:3.40.50.1860 26 195 1.2E-49 T 25-04-2017 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 Hamap MF_01045 D-cysteine desulfhydrase [dcyD]. 2 330 64.069 T 25-04-2017 IPR023702 D-cysteine desulphhydrase, bacterial GO:0019148 KEGG: 00270+4.4.1.15 A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 Gene3D G3DSA:3.40.50.1100 29 101 9.4E-4 T 25-04-2017 A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 Gene3D G3DSA:3.40.50.1100 113 327 2.3E-66 T 25-04-2017 A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 318 9.3E-54 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 SUPERFAMILY SSF53686 8 328 1.83E-87 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 PIRSF PIRSF006278 1 330 4.2E-96 T 25-04-2017 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase A4U88_RS14280 baac7e20cc96ae0b0674f9b2f53c0cf9 330 TIGRFAM TIGR01275 ACC_deam_rel: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 13 330 2.8E-129 T 25-04-2017 IPR005966 D-cysteine desulfhydrase GO:0003824 KEGG: 00270+4.4.1.15 A4U88_RS21075 620f9e777b5598c1583a77e2673461bb 211 Gene3D G3DSA:1.20.1050.10 102 209 9.0E-44 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21075 620f9e777b5598c1583a77e2673461bb 211 Gene3D G3DSA:3.40.30.10 8 101 1.7E-24 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21075 620f9e777b5598c1583a77e2673461bb 211 SUPERFAMILY SSF52833 14 90 6.12E-18 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21075 620f9e777b5598c1583a77e2673461bb 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 84 1.3E-12 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS21075 620f9e777b5598c1583a77e2673461bb 211 SUPERFAMILY SSF47616 88 203 5.93E-11 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21075 620f9e777b5598c1583a77e2673461bb 211 Pfam PF14834 Glutathione S-transferase, C-terminal domain 92 208 7.6E-52 T 25-04-2017 A4U88_RS13240 221e551e176f2f1cec9a592105561ce5 300 Pfam PF01734 Patatin-like phospholipase 8 165 1.2E-22 T 25-04-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 A4U88_RS13240 221e551e176f2f1cec9a592105561ce5 300 Gene3D G3DSA:3.40.1090.10 34 170 6.5E-4 T 25-04-2017 A4U88_RS13240 221e551e176f2f1cec9a592105561ce5 300 SUPERFAMILY SSF52151 1 294 2.59E-54 T 25-04-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 A4U88_RS11625 0347e4c948f0cfe6f3720adc1367316e 291 SUPERFAMILY SSF53474 16 280 3.0E-42 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11625 0347e4c948f0cfe6f3720adc1367316e 291 Gene3D G3DSA:3.40.50.1820 37 278 6.3E-48 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11625 0347e4c948f0cfe6f3720adc1367316e 291 Pfam PF07859 alpha/beta hydrolase fold 73 187 9.3E-16 T 25-04-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 A4U88_RS13490 b507f2f7686300f88b31e30d61556348 89 Gene3D G3DSA:3.30.1070.10 31 86 1.0E-23 T 25-04-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 A4U88_RS13490 b507f2f7686300f88b31e30d61556348 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 7.0E-24 T 25-04-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 A4U88_RS13490 b507f2f7686300f88b31e30d61556348 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 18.66 T 25-04-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 A4U88_RS13490 b507f2f7686300f88b31e30d61556348 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 1.8E-33 T 25-04-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 A4U88_RS13490 b507f2f7686300f88b31e30d61556348 89 SUPERFAMILY SSF55229 32 84 3.79E-17 T 25-04-2017 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 Gene3D G3DSA:3.40.190.10 27 108 9.6E-17 T 25-04-2017 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 Gene3D G3DSA:3.40.190.10 216 256 9.6E-17 T 25-04-2017 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 33 252 3.6E-80 T 25-04-2017 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 Gene3D G3DSA:3.40.190.10 109 215 1.3E-45 T 25-04-2017 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 Pfam PF13531 Bacterial extracellular solute-binding protein 28 253 6.8E-51 T 25-04-2017 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 SUPERFAMILY SSF53850 26 255 1.92E-71 T 25-04-2017 A4U88_RS06205 c441e34e1fd3055938ba588d76bd0364 257 PIRSF PIRSF004846 1 257 4.4E-81 T 25-04-2017 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 A4U88_RS04795 6c12a9d7292c0063ace3f1a6136b8bce 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 7.7E-17 T 25-04-2017 IPR003849 Preprotein translocase YajC A4U88_RS04795 6c12a9d7292c0063ace3f1a6136b8bce 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 7.7E-17 T 25-04-2017 IPR003849 Preprotein translocase YajC A4U88_RS04795 6c12a9d7292c0063ace3f1a6136b8bce 110 Pfam PF02699 Preprotein translocase subunit 24 99 1.3E-25 T 25-04-2017 IPR003849 Preprotein translocase YajC A4U88_RS04795 6c12a9d7292c0063ace3f1a6136b8bce 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 102 8.6E-33 T 25-04-2017 IPR003849 Preprotein translocase YajC A4U88_RS04795 6c12a9d7292c0063ace3f1a6136b8bce 110 SMART SM01323 19 102 1.4E-34 T 25-04-2017 IPR003849 Preprotein translocase YajC A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 Pfam PF00460 Flagella basal body rod protein 5 35 8.6E-14 T 25-04-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 SUPERFAMILY SSF117143 93 222 1.05E-35 T 25-04-2017 A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 259 1.2E-120 T 25-04-2017 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 145 243 6.6E-30 T 25-04-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 3.3E-49 T 25-04-2017 IPR020013 Fagellar hook-basal body protein, FlgE/F/G A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 260 1.3E-26 T 25-04-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain A4U88_RS14435 2e1a8836b3c0b4acca15781ae3ce323b 260 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 25-04-2017 IPR019776 Flagellar basal body rod protein, conserved site A4U88_RS03060 3344378449adf79b2c0d0f6da778ce73 388 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 386 23.548 T 25-04-2017 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 A4U88_RS03060 3344378449adf79b2c0d0f6da778ce73 388 Pfam PF06965 Na+/H+ antiporter 1 7 379 4.2E-149 T 25-04-2017 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 A4U88_RS03060 3344378449adf79b2c0d0f6da778ce73 388 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 380 1.5E-171 T 25-04-2017 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 A4U88_RS03060 3344378449adf79b2c0d0f6da778ce73 388 Gene3D G3DSA:1.20.1530.10 4 384 1.2E-155 T 25-04-2017 IPR023171 Na/H antiporter domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SUPERFAMILY SSF55785 142 246 7.73E-24 T 25-04-2017 IPR000014 PAS domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 Gene3D G3DSA:1.10.287.950 244 425 5.9E-43 T 25-04-2017 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 254 1.6E-17 T 25-04-2017 IPR000014 PAS domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 19 133 2.9E-14 T 25-04-2017 IPR000014 PAS domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SUPERFAMILY SSF55785 23 127 7.68E-23 T 25-04-2017 IPR000014 PAS domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SUPERFAMILY SSF58104 215 426 1.16E-48 T 25-04-2017 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 Pfam PF08448 PAS fold 145 248 1.6E-15 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 Gene3D G3DSA:3.30.450.20 145 243 9.9E-24 T 25-04-2017 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 Gene3D G3DSA:3.30.450.20 23 126 1.6E-22 T 25-04-2017 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SMART SM00091 11 79 1.8 T 25-04-2017 IPR000014 PAS domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SMART SM00091 132 202 4.4E-4 T 25-04-2017 IPR000014 PAS domain A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SMART SM00283 238 429 9.3E-11 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 Pfam PF08447 PAS fold 35 121 2.2E-13 T 25-04-2017 IPR013655 PAS fold-3 GO:0005515 A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SMART SM00086 207 249 2.9E-5 T 25-04-2017 IPR001610 PAC motif A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 SMART SM00086 85 127 0.0011 T 25-04-2017 IPR001610 PAC motif A4U88_RS07175 54fd9d7440735c2dc2b5918ee9120636 434 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 282 425 4.0E-33 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 SUPERFAMILY SSF55347 614 797 2.55E-51 T 25-04-2017 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 SUPERFAMILY SSF51735 464 636 2.73E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 SUPERFAMILY SSF55021 304 381 1.26E-23 T 25-04-2017 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 SUPERFAMILY SSF55021 383 476 4.07E-21 T 25-04-2017 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 PIRSF PIRSF000727 1 817 0.0 T 25-04-2017 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Gene3D G3DSA:3.40.50.720 464 635 1.7E-63 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 25-04-2017 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 25-04-2017 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Gene3D G3DSA:3.30.360.10 636 791 1.8E-55 T 25-04-2017 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 SUPERFAMILY SSF53633 1 298 1.7E-73 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 4.1E-144 T 25-04-2017 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 4.1E-29 T 25-04-2017 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Pfam PF13840 ACT domain 314 376 3.4E-9 T 25-04-2017 IPR027795 GATS-like ACT domain A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Pfam PF13840 ACT domain 394 449 1.3E-7 T 25-04-2017 IPR027795 GATS-like ACT domain A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Gene3D G3DSA:3.40.1160.10 1 49 2.2E-68 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Gene3D G3DSA:3.40.1160.10 111 300 2.2E-68 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Pfam PF00696 Amino acid kinase family 2 284 1.1E-44 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS03005 3469382c1a7716acb66c31f62ab55982 819 Pfam PF00742 Homoserine dehydrogenase 614 810 6.7E-48 T 25-04-2017 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 A4U88_RS23170 05478bd016a683f8ce0d510e4dc22c68 199 Gene3D G3DSA:3.40.50.10490 14 188 3.3E-34 T 25-04-2017 A4U88_RS23170 05478bd016a683f8ce0d510e4dc22c68 199 SUPERFAMILY SSF53697 12 188 1.75E-35 T 25-04-2017 A4U88_RS23170 05478bd016a683f8ce0d510e4dc22c68 199 Pfam PF01380 SIS domain 38 167 4.8E-23 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 SUPERFAMILY SSF48179 190 293 1.11E-22 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 SUPERFAMILY SSF48179 417 497 8.33E-10 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 187 3.3E-55 T 25-04-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 Gene3D G3DSA:3.40.50.720 6 192 2.5E-51 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 SUPERFAMILY SSF51735 8 189 3.06E-47 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 Gene3D G3DSA:1.10.1040.10 193 286 5.9E-23 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 Gene3D G3DSA:1.10.1040.10 422 495 1.9E-10 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 191 285 6.7E-23 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS08805 aa0216a22efe09450d6b1562c74840c3 509 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 423 496 4.6E-7 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS06115 956c6dc38f010a86741c96bdca71e970 350 SUPERFAMILY SSF51569 7 348 2.72E-137 T 25-04-2017 A4U88_RS06115 956c6dc38f010a86741c96bdca71e970 350 Gene3D G3DSA:3.20.20.70 9 349 3.3E-159 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS06115 956c6dc38f010a86741c96bdca71e970 350 PIRSF PIRSF001361 1 350 3.5E-163 T 25-04-2017 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 A4U88_RS06115 956c6dc38f010a86741c96bdca71e970 350 Pfam PF00793 DAHP synthetase I family 39 338 3.8E-107 T 25-04-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS06115 956c6dc38f010a86741c96bdca71e970 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 3.7E-175 T 25-04-2017 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 A4U88_RS13045 7a95a390bf9f3a76401e1cd76ca4211b 214 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 206 214 - T 25-04-2017 IPR000758 Virulence-related outer membrane protein GO:0009279 A4U88_RS13045 7a95a390bf9f3a76401e1cd76ca4211b 214 Pfam PF03922 OmpW family 26 214 4.5E-64 T 25-04-2017 IPR005618 Outer membrane protein, OmpW GO:0019867 A4U88_RS13045 7a95a390bf9f3a76401e1cd76ca4211b 214 SUPERFAMILY SSF56925 26 214 2.88E-29 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS13045 7a95a390bf9f3a76401e1cd76ca4211b 214 Gene3D G3DSA:2.40.160.20 25 214 6.4E-71 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS01380 342f64858470c05f3f92b6e758fcc284 401 Gene3D G3DSA:3.60.120.10 122 399 2.9E-88 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS01380 342f64858470c05f3f92b6e758fcc284 401 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 132 395 1.2E-89 T 25-04-2017 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 A4U88_RS01380 342f64858470c05f3f92b6e758fcc284 401 Pfam PF00425 chorismate binding enzyme 134 388 8.6E-74 T 25-04-2017 IPR015890 Chorismate-utilising enzyme, C-terminal A4U88_RS01380 342f64858470c05f3f92b6e758fcc284 401 SUPERFAMILY SSF56322 33 398 9.55E-92 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 SUPERFAMILY SSF52518 7 176 1.28E-29 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 418 536 3.1E-8 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 169 1.3E-26 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 Gene3D G3DSA:3.40.50.970 344 545 5.0E-30 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 Gene3D G3DSA:3.40.50.970 7 178 8.5E-42 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 432 3.5E-139 T 25-04-2017 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 SUPERFAMILY SSF52518 368 548 8.16E-33 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 PIRSF PIRSF004983 1 558 1.5E-174 T 25-04-2017 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 555 31.969 T 25-04-2017 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 A4U88_RS16755 baa89bb3af5e21f4d42748fce6e82f92 558 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 390 2.4E-86 T 25-04-2017 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Gene3D G3DSA:3.90.550.10 2 245 5.8E-72 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 43.382 T 25-04-2017 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Gene3D G3DSA:2.160.10.10 325 456 8.8E-34 T 25-04-2017 A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Pfam PF12804 MobA-like NTP transferase domain 8 123 4.8E-22 T 25-04-2017 IPR025877 MobA-like NTP transferase A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 318 350 0.0021 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 1.1E-6 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 300 6.7E-7 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 Gene3D G3DSA:2.160.10.10 246 324 1.9E-18 T 25-04-2017 A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 SUPERFAMILY SSF53448 6 252 8.97E-68 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 2.4E-204 T 25-04-2017 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 A4U88_RS24140 a0a8456044197639c15d5d7e5a6662f3 457 SUPERFAMILY SSF51161 255 437 1.9E-52 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 Pfam PF13599 Pentapeptide repeats (9 copies) 653 730 3.5E-9 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 SUPERFAMILY SSF141571 527 635 1.31E-23 T 25-04-2017 A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 Pfam PF09937 Uncharacterized protein conserved in bacteria (DUF2169) 19 299 1.4E-81 T 25-04-2017 IPR018683 Domain of unknown function DUF2169 A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 SUPERFAMILY SSF141571 689 830 1.24E-28 T 25-04-2017 A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 Pfam PF00805 Pentapeptide repeats (8 copies) 557 595 1.7E-9 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 Pfam PF00805 Pentapeptide repeats (8 copies) 788 823 2.8E-9 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14615 6f5bd14e3ac35fc10f682720f0550c03 850 Pfam PF00805 Pentapeptide repeats (8 copies) 527 556 1.7E-5 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS21420 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 Gene3D G3DSA:3.40.50.300 2 150 2.2E-13 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21420 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 PIRSF PIRSF005052 1 284 2.7E-114 T 25-04-2017 IPR005337 RapZ-like family GO:0005524 A4U88_RS21420 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.972 T 25-04-2017 IPR005337 RapZ-like family GO:0005524 A4U88_RS21420 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 Pfam PF03668 P-loop ATPase protein family 1 282 1.3E-144 T 25-04-2017 IPR005337 RapZ-like family GO:0005524 A4U88_RS21420 fdb1c4bb9654cb1cfc1e012fd5346fcf 284 SUPERFAMILY SSF52540 2 151 2.81E-12 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11160 55b14e8fa8d93c5ef3dff929be93595e 222 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 172 6.4E-39 T 25-04-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 A4U88_RS11160 55b14e8fa8d93c5ef3dff929be93595e 222 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 214 23.939 T 25-04-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 A4U88_RS11160 55b14e8fa8d93c5ef3dff929be93595e 222 SUPERFAMILY SSF52540 1 214 9.92E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11160 55b14e8fa8d93c5ef3dff929be93595e 222 Pfam PF13500 AAA domain 4 207 5.0E-31 T 25-04-2017 A4U88_RS11160 55b14e8fa8d93c5ef3dff929be93595e 222 Gene3D G3DSA:3.40.50.300 3 217 1.7E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11160 55b14e8fa8d93c5ef3dff929be93595e 222 PIRSF PIRSF006755 1 222 1.1E-65 T 25-04-2017 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 Gene3D G3DSA:3.40.190.10 84 160 1.3E-9 T 25-04-2017 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.0E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 Gene3D G3DSA:1.10.10.10 2 82 3.0E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 SUPERFAMILY SSF53850 90 269 2.95E-22 T 25-04-2017 A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 Pfam PF03466 LysR substrate binding domain 88 268 6.5E-22 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23385 f66327f76752655b0c1172bd6084d85a 275 SUPERFAMILY SSF46785 2 81 2.87E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 Pfam PF13242 HAD-hyrolase-like 109 179 5.4E-13 T 25-04-2017 A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 156 5.1E-39 T 25-04-2017 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 155 3.6E-39 T 25-04-2017 IPR006543 Histidinol-phosphate phosphatase GO:0016791 A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 PIRSF PIRSF004682 1 187 2.9E-65 T 25-04-2017 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 6 180 2.5E-94 T 25-04-2017 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 Gene3D G3DSA:3.40.50.1000 3 183 2.4E-63 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS19095 a2147ed255dc772aeb43219d4fdd356d 187 SUPERFAMILY SSF56784 3 185 4.55E-54 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS16635 5bf98285f3337fc85f698d6a5c7d3cf8 192 SUPERFAMILY SSF46689 5 77 7.48E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS16635 5bf98285f3337fc85f698d6a5c7d3cf8 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 5.1E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS16635 5bf98285f3337fc85f698d6a5c7d3cf8 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 5.1E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS16635 5bf98285f3337fc85f698d6a5c7d3cf8 192 SUPERFAMILY SSF48498 90 185 2.31E-13 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS16635 5bf98285f3337fc85f698d6a5c7d3cf8 192 Gene3D G3DSA:1.10.357.10 11 185 2.6E-30 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS16635 5bf98285f3337fc85f698d6a5c7d3cf8 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 8.5E-15 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS10685 4378746376f93d1810805f7ecaf56f9a 428 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 137 414 1.6E-85 T 25-04-2017 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 A4U88_RS10685 4378746376f93d1810805f7ecaf56f9a 428 Pfam PF01458 Uncharacterized protein family (UPF0051) 175 398 3.7E-72 T 25-04-2017 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 A4U88_RS10685 4378746376f93d1810805f7ecaf56f9a 428 SUPERFAMILY SSF101960 15 424 1.44E-108 T 25-04-2017 A4U88_RS16470 8ebdd93fa0b55ac57d336b9db55eb8df 75 Gene3D G3DSA:1.10.3390.10 1 75 1.5E-38 T 25-04-2017 IPR023202 YejL-like domain A4U88_RS16470 8ebdd93fa0b55ac57d336b9db55eb8df 75 PIRSF PIRSF006188 1 72 5.7E-35 T 25-04-2017 IPR009857 Uncharacterised protein family UPF0352 A4U88_RS16470 8ebdd93fa0b55ac57d336b9db55eb8df 75 SUPERFAMILY SSF158651 1 75 7.72E-32 T 25-04-2017 A4U88_RS16470 8ebdd93fa0b55ac57d336b9db55eb8df 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 2.4E-24 T 25-04-2017 IPR009857 Uncharacterised protein family UPF0352 A4U88_RS16470 8ebdd93fa0b55ac57d336b9db55eb8df 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.349 T 25-04-2017 IPR009857 Uncharacterised protein family UPF0352 A4U88_RS16470 8ebdd93fa0b55ac57d336b9db55eb8df 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 1.0E-31 T 25-04-2017 IPR009857 Uncharacterised protein family UPF0352 A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 Gene3D G3DSA:3.40.50.1220 182 334 1.3E-57 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 SUPERFAMILY SSF52518 355 546 2.03E-64 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 1.7E-214 T 25-04-2017 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 321 7.5E-41 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 2.2E-49 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 Gene3D G3DSA:3.40.50.970 335 537 3.5E-74 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 166 1.1E-56 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 SUPERFAMILY SSF52467 183 341 1.02E-56 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 SUPERFAMILY SSF52518 1 175 8.04E-63 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS23360 c05714e9d6ece89f98040796028a633b 548 Gene3D G3DSA:3.40.50.970 1 171 2.5E-72 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 7.4E-117 T 25-04-2017 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 SUPERFAMILY SSF46785 260 331 2.31E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 SUPERFAMILY SSF52540 23 255 6.81E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 334 2.0E-38 T 25-04-2017 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 Gene3D G3DSA:1.10.8.60 186 258 5.6E-32 T 25-04-2017 A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 Gene3D G3DSA:1.10.10.10 260 331 1.3E-36 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 Gene3D G3DSA:3.40.50.300 23 178 5.0E-33 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 SMART SM00382 54 181 2.2E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 1.8E-148 T 25-04-2017 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 185.636 T 25-04-2017 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 A4U88_RS13585 3b6c88e1f3c805cddf16706cacf167c7 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.3E-34 T 25-04-2017 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 1.9E-47 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 Pfam PF02082 Transcriptional regulator 1 83 1.3E-27 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 SUPERFAMILY SSF46785 2 133 5.93E-37 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 25-04-2017 IPR030489 Transcription regulator Rrf2-type, conserved site A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 164 50.735 T 25-04-2017 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 4.1E-67 T 25-04-2017 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 A4U88_RS18455 a2d6d1fff6251e3dcbdfdaf0bc88d613 164 Gene3D G3DSA:1.10.10.10 1 134 6.7E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 SUPERFAMILY SSF109604 451 626 2.7E-13 T 25-04-2017 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 SMART SM00471 458 605 2.2E-12 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 SUPERFAMILY SSF81593 206 320 3.14E-10 T 25-04-2017 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 PIRSF PIRSF006288 20 884 0.0 T 25-04-2017 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Gene3D G3DSA:3.30.460.10 82 175 5.8E-6 T 25-04-2017 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 SUPERFAMILY SSF81301 28 182 1.21E-23 T 25-04-2017 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 44 878 6.5E-304 T 25-04-2017 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Pfam PF08335 GlnD PII-uridylyltransferase 186 325 9.5E-38 T 25-04-2017 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 884 355.319 T 25-04-2017 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Pfam PF01842 ACT domain 810 871 1.5E-8 T 25-04-2017 IPR002912 ACT domain GO:0008152|GO:0016597 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Pfam PF01966 HD domain 462 595 3.1E-15 T 25-04-2017 IPR006674 HD domain A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 SUPERFAMILY SSF55021 699 770 1.5E-8 T 25-04-2017 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Pfam PF01909 Nucleotidyltransferase domain 78 113 2.3E-6 T 25-04-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Gene3D G3DSA:3.30.70.260 810 873 4.4E-8 T 25-04-2017 A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 Gene3D G3DSA:1.10.3210.10 432 623 1.9E-26 T 25-04-2017 IPR006674 HD domain A4U88_RS19285 1e58e1488ac572c411acf2afc5efc5d9 884 SUPERFAMILY SSF55021 807 871 3.09E-9 T 25-04-2017 A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 Gene3D G3DSA:1.10.10.10 1 97 1.3E-34 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 Pfam PF01022 Bacterial regulatory protein, arsR family 23 67 4.8E-14 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 5.9E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 5.9E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 5.9E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 5.9E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 SUPERFAMILY SSF46785 11 96 6.02E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09055 ba88af0048cca26eb3cdafc2e8ccd681 105 SMART SM00418 15 93 4.5E-24 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 SMART SM01266 7 61 5.2E-18 T 25-04-2017 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 SUPERFAMILY SSF51161 6 184 1.8E-52 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 Pfam PF12464 Maltose acetyltransferase 9 58 2.6E-16 T 25-04-2017 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 Gene3D G3DSA:2.160.10.10 3 185 4.2E-61 T 25-04-2017 A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 132 166 1.4E-11 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS21820 9376ee33113ca967de7a5da8cc2d86c5 185 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 95 111 0.0088 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 SUPERFAMILY SSF46785 4 88 3.41E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 SUPERFAMILY SSF53850 93 295 1.41E-40 T 25-04-2017 A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.4E-22 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 Gene3D G3DSA:3.40.190.10 90 174 1.1E-27 T 25-04-2017 A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 Gene3D G3DSA:1.10.10.10 1 82 3.4E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 Pfam PF03466 LysR substrate binding domain 91 294 1.3E-45 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11150 d7ce815a2354b0876ee44c6140bdaf5e 296 Gene3D G3DSA:3.40.190.10 175 271 3.4E-33 T 25-04-2017 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 Pfam PF00367 phosphotransferase system, EIIB 426 457 1.4E-11 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 SUPERFAMILY SSF55604 422 495 9.15E-18 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 435 452 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 493 1.7E-203 T 25-04-2017 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 Gene3D G3DSA:3.30.1360.60 419 496 1.2E-23 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 Pfam PF02378 Phosphotransferase system, EIIC 12 324 1.7E-78 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 Gene3D G3DSA:2.70.70.10 529 673 3.2E-57 T 25-04-2017 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 SUPERFAMILY SSF51261 527 675 4.01E-52 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 530 655 2.5E-48 T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 593 605 - T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 531 651 1.7E-48 T 25-04-2017 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 A4U88_RS05790 d7ac54720581cd58c17650563ef6d7f5 678 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 383 482 1.1E-19 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS07295 451a6eaeabc8d4e2609a84981ca986ff 255 Gene3D G3DSA:3.90.420.10 90 252 7.6E-55 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS07295 451a6eaeabc8d4e2609a84981ca986ff 255 SUPERFAMILY SSF56524 53 254 2.62E-64 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS07295 451a6eaeabc8d4e2609a84981ca986ff 255 Pfam PF00174 Oxidoreductase molybdopterin binding domain 100 244 6.2E-34 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS23010 3d4793d6e17dbca06f6f6489a1966029 179 Gene3D G3DSA:2.60.40.1090 32 179 1.1E-44 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23010 3d4793d6e17dbca06f6f6489a1966029 179 Pfam PF00419 Fimbrial protein 32 179 7.9E-14 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23010 3d4793d6e17dbca06f6f6489a1966029 179 SUPERFAMILY SSF49401 32 179 8.95E-39 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS20930 8b80ba1be6630ae4743f23812083bf14 356 Gene3D G3DSA:3.40.50.10440 12 182 9.3E-67 T 25-04-2017 A4U88_RS20930 8b80ba1be6630ae4743f23812083bf14 356 Gene3D G3DSA:3.30.1180.20 185 355 7.5E-68 T 25-04-2017 A4U88_RS20930 8b80ba1be6630ae4743f23812083bf14 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 2.1E-148 T 25-04-2017 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 A4U88_RS20930 8b80ba1be6630ae4743f23812083bf14 356 SUPERFAMILY SSF82549 11 355 8.63E-125 T 25-04-2017 A4U88_RS20930 8b80ba1be6630ae4743f23812083bf14 356 Pfam PF02733 Dak1 domain 17 351 1.5E-125 T 25-04-2017 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 A4U88_RS12195 0448aa10c14e7771f74cc97a27c920cd 116 SUPERFAMILY SSF54909 1 115 3.32E-52 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS12195 0448aa10c14e7771f74cc97a27c920cd 116 Gene3D G3DSA:3.30.70.900 1 115 8.2E-56 T 25-04-2017 A4U88_RS12195 0448aa10c14e7771f74cc97a27c920cd 116 PIRSF PIRSF007028 1 116 3.4E-52 T 25-04-2017 IPR009874 Protein of unknown function DUF1428 A4U88_RS12195 0448aa10c14e7771f74cc97a27c920cd 116 Pfam PF07237 Protein of unknown function (DUF1428) 2 102 3.7E-47 T 25-04-2017 IPR009874 Protein of unknown function DUF1428 A4U88_RS09920 1ac1d346c2d0d9cc0ad61a9466eff890 208 Pfam PF00849 RNA pseudouridylate synthase 61 176 6.5E-12 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS09920 1ac1d346c2d0d9cc0ad61a9466eff890 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 3.4E-57 T 25-04-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS09920 1ac1d346c2d0d9cc0ad61a9466eff890 208 SUPERFAMILY SSF55120 30 205 6.08E-41 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS09920 1ac1d346c2d0d9cc0ad61a9466eff890 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 25-04-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 Pfam PF03466 LysR substrate binding domain 89 290 4.3E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 SUPERFAMILY SSF46785 5 85 5.56E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 7.4E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 SUPERFAMILY SSF53850 89 296 3.44E-43 T 25-04-2017 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 Gene3D G3DSA:3.40.190.10 177 261 6.3E-15 T 25-04-2017 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 Gene3D G3DSA:1.10.10.10 3 80 2.2E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.7E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.7E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.7E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02820 aedbf81146bea6c99501ed039eb53d8b 314 Gene3D G3DSA:3.40.190.10 92 176 5.1E-24 T 25-04-2017 A4U88_RS11085 b179fcf54890ba7ede83e7a39e884207 384 Gene3D G3DSA:3.40.710.10 3 382 7.7E-87 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS11085 b179fcf54890ba7ede83e7a39e884207 384 Pfam PF00144 Beta-lactamase 14 367 9.4E-66 T 25-04-2017 IPR001466 Beta-lactamase-related A4U88_RS11085 b179fcf54890ba7ede83e7a39e884207 384 SUPERFAMILY SSF56601 7 382 1.36E-91 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05055 cec21c7db050a5e8e797ecd9eb56c7a0 299 Gene3D G3DSA:3.60.110.10 11 287 6.3E-80 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS05055 cec21c7db050a5e8e797ecd9eb56c7a0 299 Pfam PF00795 Carbon-nitrogen hydrolase 13 266 3.7E-51 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS05055 cec21c7db050a5e8e797ecd9eb56c7a0 299 SUPERFAMILY SSF56317 10 288 1.31E-75 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 456 1.2E-29 T 25-04-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 325 1.1E-58 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 SUPERFAMILY SSF51905 1 321 4.54E-57 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PIRSF PIRSF000350 1 462 1.2E-69 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.9E-26 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.9E-26 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 5.9E-26 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 5.9E-26 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.9E-26 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Gene3D G3DSA:3.50.50.60 6 146 3.4E-30 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Gene3D G3DSA:3.50.50.60 147 333 7.8E-52 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 465 66.979 T 25-04-2017 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 406 421 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 4.3E-51 T 25-04-2017 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 SUPERFAMILY SSF55424 344 462 1.03E-29 T 25-04-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 A4U88_RS23450 fc0ded7a8e5261e6d46ce36fa4c32d47 465 Gene3D G3DSA:3.30.390.30 344 459 2.1E-32 T 25-04-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 A4U88_RS04300 0e236fcab38387a1ff135608d42c1ab1 325 Gene3D G3DSA:3.30.70.270 175 261 8.9E-6 T 25-04-2017 A4U88_RS04300 0e236fcab38387a1ff135608d42c1ab1 325 SUPERFAMILY SSF56672 108 313 3.06E-11 T 25-04-2017 A4U88_RS04300 0e236fcab38387a1ff135608d42c1ab1 325 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 115 263 8.5E-14 T 25-04-2017 IPR000477 Reverse transcriptase domain A4U88_RS00180 a864dff2496899eb15733c96c40f50c3 223 Gene3D G3DSA:2.40.33.20 4 222 1.9E-85 T 25-04-2017 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like A4U88_RS00180 a864dff2496899eb15733c96c40f50c3 223 Pfam PF03473 MOSC domain 46 155 1.7E-20 T 25-04-2017 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 A4U88_RS00180 a864dff2496899eb15733c96c40f50c3 223 Pfam PF03475 3-alpha domain 168 211 4.4E-17 T 25-04-2017 IPR005163 3-alpha domain A4U88_RS00180 a864dff2496899eb15733c96c40f50c3 223 SUPERFAMILY SSF50800 5 222 7.32E-74 T 25-04-2017 IPR011037 Pyruvate kinase-like, insert domain A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 1.1E-53 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 1.1E-53 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 1.1E-53 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 1.1E-53 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 1.1E-53 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 25-04-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 2.0E-118 T 25-04-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 SUPERFAMILY SSF53187 180 496 1.7E-125 T 25-04-2017 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 Gene3D G3DSA:3.40.630.10 171 496 7.0E-138 T 25-04-2017 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.098 T 25-04-2017 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 2.9E-33 T 25-04-2017 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 SUPERFAMILY SSF52949 1 184 3.77E-51 T 25-04-2017 A4U88_RS02280 1860822068ab26feef64e429d522a4ab 503 Gene3D G3DSA:3.40.220.10 1 161 5.2E-66 T 25-04-2017 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 16 395 6.3E-146 T 25-04-2017 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 Pfam PF03222 Tryptophan/tyrosine permease family 11 401 2.2E-142 T 25-04-2017 IPR018227 Tryptophan/tyrosine permease GO:0003333 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 19 42 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 46 65 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 91 111 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16370 8a73da0f12dee8f19f4df0463e76d292 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 1.6E-97 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS18020 1c97ae682867ef9672fc42cb02ea188a 549 SUPERFAMILY SSF161098 263 532 3.14E-37 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18020 1c97ae682867ef9672fc42cb02ea188a 549 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 281 540 2.9E-72 T 25-04-2017 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 A4U88_RS18020 1c97ae682867ef9672fc42cb02ea188a 549 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 317 543 2.1E-17 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18020 1c97ae682867ef9672fc42cb02ea188a 549 Gene3D G3DSA:1.10.3720.10 284 545 4.5E-52 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04345 82d3c80e7c1fe3c9b123ca6376004542 207 Gene3D G3DSA:3.40.50.850 2 204 3.1E-48 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS04345 82d3c80e7c1fe3c9b123ca6376004542 207 SUPERFAMILY SSF52499 4 202 5.23E-54 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS04345 82d3c80e7c1fe3c9b123ca6376004542 207 Pfam PF00857 Isochorismatase family 14 165 1.7E-21 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 Gene3D G3DSA:2.130.10.120 102 434 8.6E-93 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 32 431 1.8E-93 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 527 546 3.0E-49 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 557 577 3.0E-49 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 499 523 3.0E-49 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 633 655 3.0E-49 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 473 491 3.0E-49 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 615 630 3.0E-49 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 SUPERFAMILY SSF50993 29 434 4.97E-87 T 25-04-2017 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 Gene3D G3DSA:3.40.50.1820 443 664 2.5E-38 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 SUPERFAMILY SSF53474 443 681 1.41E-44 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 Pfam PF00326 Prolyl oligopeptidase family 488 700 1.7E-64 T 25-04-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 A4U88_RS17705 531659a3a393691085dadccfe5c09786 708 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 534 564 - T 25-04-2017 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 195 236 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 SUPERFAMILY SSF46689 195 240 3.58E-7 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 Gene3D G3DSA:1.10.10.60 196 239 4.7E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 Pfam PF12833 Helix-turn-helix domain 165 240 6.6E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 SUPERFAMILY SSF51182 15 174 4.36E-16 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 SMART SM00342 158 240 2.4E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 Pfam PF02311 AraC-like ligand binding domain 10 74 5.8E-6 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 Gene3D G3DSA:1.10.10.60 138 195 3.2E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04620 8ce96f0f15a17f882623a4f9f2eb7285 247 Gene3D G3DSA:2.60.120.280 10 132 1.6E-9 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS04670 773b5636849065fdef881c23045525fa 257 SMART SM00346 1 95 9.8E-15 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS04670 773b5636849065fdef881c23045525fa 257 SUPERFAMILY SSF55781 64 246 1.96E-31 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS04670 773b5636849065fdef881c23045525fa 257 Gene3D G3DSA:1.10.10.10 2 67 2.9E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04670 773b5636849065fdef881c23045525fa 257 Pfam PF09339 IclR helix-turn-helix domain 3 59 8.6E-13 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS04670 773b5636849065fdef881c23045525fa 257 Pfam PF01614 Bacterial transcriptional regulator 127 224 5.4E-15 T 25-04-2017 IPR014757 Transcription regulator IclR, C-terminal A4U88_RS04670 773b5636849065fdef881c23045525fa 257 SUPERFAMILY SSF46785 2 78 3.15E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04670 773b5636849065fdef881c23045525fa 257 Gene3D G3DSA:3.30.450.40 79 247 7.2E-31 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS03335 4f05c3beb261c304792ddc772c409735 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 219 3.3E-18 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS03335 4f05c3beb261c304792ddc772c409735 587 Gene3D G3DSA:3.40.710.10 242 559 2.3E-85 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS03335 4f05c3beb261c304792ddc772c409735 587 SUPERFAMILY SSF56601 234 562 4.35E-86 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS03335 4f05c3beb261c304792ddc772c409735 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 553 1.5E-81 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS03335 4f05c3beb261c304792ddc772c409735 587 SUPERFAMILY SSF56519 62 233 1.1E-44 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS03335 4f05c3beb261c304792ddc772c409735 587 Gene3D G3DSA:3.90.1310.10 141 241 6.1E-31 T 25-04-2017 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 SUPERFAMILY SSF55021 336 423 2.75E-28 T 25-04-2017 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 Gene3D G3DSA:3.40.50.1100 80 333 9.1E-79 T 25-04-2017 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 2.8E-29 T 25-04-2017 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 7.0E-26 T 25-04-2017 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 Gene3D G3DSA:3.40.1020.10 339 512 7.4E-58 T 25-04-2017 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 SUPERFAMILY SSF55021 420 512 1.26E-25 T 25-04-2017 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 4.3E-264 T 25-04-2017 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 25-04-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 A4U88_RS23340 a18395db89b04094febc17792faac34b 514 SUPERFAMILY SSF53686 15 365 1.44E-101 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS23340 a18395db89b04094febc17792faac34b 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 30 316 1.8E-77 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS19050 f9991fb8eb8214df0e9bd7a755327ec2 229 SMART SM01144 27 219 5.1E-76 T 25-04-2017 IPR005636 DTW A4U88_RS19050 f9991fb8eb8214df0e9bd7a755327ec2 229 Pfam PF03942 DTW domain 30 214 1.3E-42 T 25-04-2017 IPR005636 DTW A4U88_RS14520 c71071f30ea18c578e1de76c4c070686 129 Gene3D G3DSA:3.40.50.2300 4 126 1.8E-39 T 25-04-2017 A4U88_RS14520 c71071f30ea18c578e1de76c4c070686 129 SUPERFAMILY SSF52172 5 125 5.69E-37 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS14520 c71071f30ea18c578e1de76c4c070686 129 Pfam PF00072 Response regulator receiver domain 9 120 2.2E-32 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14520 c71071f30ea18c578e1de76c4c070686 129 SMART SM00448 6 120 1.7E-35 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS12990 928dc550c7c86a2815eeac0784a88a83 265 SUPERFAMILY SSF53474 11 264 7.12E-30 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12990 928dc550c7c86a2815eeac0784a88a83 265 Pfam PF00561 alpha/beta hydrolase fold 23 144 5.1E-13 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS12990 928dc550c7c86a2815eeac0784a88a83 265 Gene3D G3DSA:3.40.50.1820 9 264 2.8E-29 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS17530 30ca3461d04efdcccef4486e5bf17833 268 Pfam PF00005 ABC transporter 21 168 1.7E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS17530 30ca3461d04efdcccef4486e5bf17833 268 Gene3D G3DSA:3.40.50.300 7 235 7.2E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17530 30ca3461d04efdcccef4486e5bf17833 268 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS17530 30ca3461d04efdcccef4486e5bf17833 268 SUPERFAMILY SSF52540 7 230 1.28E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17530 30ca3461d04efdcccef4486e5bf17833 268 SMART SM00382 29 226 2.2E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 SUPERFAMILY SSF52266 245 287 1.34E-8 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 SUPERFAMILY SSF52266 31 172 1.34E-8 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 SUPERFAMILY SSF52266 315 349 1.34E-8 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 PIRSF PIRSF037375 2 662 6.7E-228 T 25-04-2017 IPR017186 Lipase, autotransporter EstA A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 32 43 - T 25-04-2017 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 Pfam PF03797 Autotransporter beta-domain 389 644 6.1E-42 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 33 345 5.4E-11 T 25-04-2017 IPR001087 GDSL lipase/esterase GO:0016788 A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 SMART SM00869 389 651 2.7E-32 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 Gene3D G3DSA:2.40.128.130 360 662 3.0E-49 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 SUPERFAMILY SSF103515 360 662 2.88E-42 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 Gene3D G3DSA:3.40.50.1110 17 179 3.9E-62 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS00125 face86b0b620bcbc36536dd1de5fe745 662 Gene3D G3DSA:3.40.50.1110 246 355 3.9E-62 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS05410 8359e6c3b7edbe825b4f735dc81b7aba 810 Pfam PF02687 FtsX-like permease family 247 364 1.8E-9 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS05410 8359e6c3b7edbe825b4f735dc81b7aba 810 Pfam PF02687 FtsX-like permease family 689 800 2.3E-15 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS03115 fec5265d38e91eb6d8d23ed7cc1bdde6 419 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 2 58 2.8E-8 T 25-04-2017 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS03115 fec5265d38e91eb6d8d23ed7cc1bdde6 419 Pfam PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 216 393 2.2E-7 T 25-04-2017 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase GO:0008152|GO:0016758 A4U88_RS03115 fec5265d38e91eb6d8d23ed7cc1bdde6 419 Gene3D G3DSA:3.40.50.2000 256 399 1.6E-20 T 25-04-2017 A4U88_RS03115 fec5265d38e91eb6d8d23ed7cc1bdde6 419 SUPERFAMILY SSF53756 2 414 2.59E-64 T 25-04-2017 A4U88_RS03115 fec5265d38e91eb6d8d23ed7cc1bdde6 419 TIGRFAM TIGR01426 MGT: glycosyltransferase, MGT family 5 416 2.7E-34 T 25-04-2017 IPR006326 UDP-glycosyltransferase, MGT GO:0016758|GO:0016999 A4U88_RS03115 fec5265d38e91eb6d8d23ed7cc1bdde6 419 Gene3D G3DSA:3.40.50.2000 1 255 2.2E-17 T 25-04-2017 A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 Pfam PF04851 Type III restriction enzyme, res subunit 3 155 6.9E-26 T 25-04-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 Gene3D G3DSA:3.40.50.300 3 155 2.3E-29 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 SMART SM00490 262 345 3.0E-9 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 Gene3D G3DSA:3.40.50.300 237 354 1.7E-21 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 Pfam PF00271 Helicase conserved C-terminal domain 242 343 4.9E-12 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 SUPERFAMILY SSF57829 422 467 1.34E-7 T 25-04-2017 IPR011332 Zinc-binding ribosomal protein GO:0006412 A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 SMART SM00487 1 185 4.2E-18 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 SUPERFAMILY SSF52540 237 359 1.86E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16455 5badd113688cee7803c186018fd61c02 585 SUPERFAMILY SSF52540 50 189 1.86E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00790 b50bfc71969f73ccca5e0c6b3701fc52 81 SUPERFAMILY SSF64307 4 80 3.4E-26 T 25-04-2017 IPR001455 TusA-like domain A4U88_RS00790 b50bfc71969f73ccca5e0c6b3701fc52 81 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 25-04-2017 IPR001455 TusA-like domain A4U88_RS00790 b50bfc71969f73ccca5e0c6b3701fc52 81 Gene3D G3DSA:3.30.110.40 5 80 2.1E-30 T 25-04-2017 IPR001455 TusA-like domain A4U88_RS00790 b50bfc71969f73ccca5e0c6b3701fc52 81 Pfam PF01206 Sulfurtransferase TusA 11 79 2.8E-24 T 25-04-2017 IPR001455 TusA-like domain A4U88_RS00790 b50bfc71969f73ccca5e0c6b3701fc52 81 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 3 81 29.649 T 25-04-2017 IPR022931 Sulphurtransferase TusA GO:0016783 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 2.6E-152 T 25-04-2017 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 5.8E-28 T 25-04-2017 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 Pfam PF01938 TRAM domain 378 440 4.3E-17 T 25-04-2017 IPR002792 TRAM domain A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 25-04-2017 IPR020612 Methylthiotransferase, conserved site GO:0051539 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 73.029 T 25-04-2017 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 SUPERFAMILY SSF102114 127 372 3.27E-60 T 25-04-2017 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 SMART SM00729 147 367 6.6E-60 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 Pfam PF04055 Radical SAM superfamily 151 325 5.1E-26 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 Gene3D G3DSA:3.80.30.20 146 379 6.2E-78 T 25-04-2017 IPR023404 Radical SAM, alpha/beta horseshoe A4U88_RS05715 633119256ec7478f68e8d7a5130121d0 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 1.7E-205 T 25-04-2017 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 SMART SM00437 280 558 1.4E-103 T 25-04-2017 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Gene3D G3DSA:3.40.50.140 1 153 2.8E-48 T 25-04-2017 IPR006171 Toprim domain A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 633 4.9E-281 T 25-04-2017 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Pfam PF01751 Toprim domain 3 135 1.4E-17 T 25-04-2017 IPR006171 Toprim domain A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 SUPERFAMILY SSF56712 1 607 3.92E-188 T 25-04-2017 IPR023405 DNA topoisomerase, type IA, core domain A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 3.8E-25 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 3.8E-25 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 3.8E-25 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 3.8E-25 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 3.8E-25 T 25-04-2017 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Gene3D G3DSA:2.70.20.10 218 252 8.5E-48 T 25-04-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Gene3D G3DSA:2.70.20.10 369 488 8.5E-48 T 25-04-2017 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 25-04-2017 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 SMART SM00493 1 124 1.5E-30 T 25-04-2017 IPR006171 Toprim domain A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Gene3D G3DSA:1.10.460.10 158 217 2.7E-51 T 25-04-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Gene3D G3DSA:1.10.460.10 490 607 2.7E-51 T 25-04-2017 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 SMART SM00436 128 223 5.9E-37 T 25-04-2017 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 640 66.471 T 25-04-2017 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 A4U88_RS13295 cf778d616f76a633aea33cc29d720574 641 Pfam PF01131 DNA topoisomerase 158 593 9.8E-113 T 25-04-2017 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 A4U88_RS23770 c0fcbd977d73b61c2aeee5572d4ee3ba 425 SUPERFAMILY SSF53756 57 419 4.93E-21 T 25-04-2017 A4U88_RS23770 c0fcbd977d73b61c2aeee5572d4ee3ba 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 211 2.4E-67 T 25-04-2017 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 A4U88_RS23770 c0fcbd977d73b61c2aeee5572d4ee3ba 425 Pfam PF00534 Glycosyl transferases group 1 234 399 1.0E-16 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.5E-6 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.5E-6 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 SUPERFAMILY SSF55811 2 134 2.84E-28 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 Pfam PF00293 NUDIX domain 2 128 1.7E-20 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 Gene3D G3DSA:3.90.79.10 2 135 9.3E-26 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS12390 8bdf6d18b1af91b1c2fa77325b4a04b2 141 Hamap MF_01846 Nucleoside triphosphatase NudI [nudI]. 1 141 41.083 T 25-04-2017 IPR023781 Nucleoside triphosphatase NudI GO:0016818 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.23+3.6.1.19+3.6.1.12|KEGG: 00983+3.6.1.19|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206 A4U88_RS08560 ffe3a0dfd0a5ddd2423f71f5d199b10a 168 Hamap MF_01179 Cell division inhibitor SulA [sulA]. 1 168 43.759 T 25-04-2017 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 A4U88_RS08560 ffe3a0dfd0a5ddd2423f71f5d199b10a 168 Gene3D G3DSA:3.40.50.300 32 147 3.9E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08560 ffe3a0dfd0a5ddd2423f71f5d199b10a 168 SUPERFAMILY SSF52540 32 146 3.35E-33 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08560 ffe3a0dfd0a5ddd2423f71f5d199b10a 168 Pfam PF03846 Cell division inhibitor SulA 8 120 2.8E-53 T 25-04-2017 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 A4U88_RS08560 ffe3a0dfd0a5ddd2423f71f5d199b10a 168 PIRSF PIRSF003093 1 168 1.2E-88 T 25-04-2017 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 A4U88_RS08560 ffe3a0dfd0a5ddd2423f71f5d199b10a 168 TIGRFAM TIGR00623 sula: cell division inhibitor SulA 3 168 5.0E-91 T 25-04-2017 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 Gene3D G3DSA:1.10.10.10 37 104 4.1E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 SMART SM00529 57 155 1.1E-31 T 25-04-2017 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 39 93 3.1E-11 T 25-04-2017 IPR022687 DTXR-type HTH domain GO:0003677 A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 96 152 1.3E-13 T 25-04-2017 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 SUPERFAMILY SSF46785 38 95 2.0E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 Gene3D G3DSA:1.10.60.10 107 152 1.8E-15 T 25-04-2017 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 A4U88_RS09255 4e7e007f52f73f45af57b36aa1a77a6f 156 SUPERFAMILY SSF47979 96 151 2.2E-13 T 25-04-2017 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 SUPERFAMILY SSF55973 3 109 1.49E-47 T 25-04-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Gene3D G3DSA:3.30.300.10 11 135 1.0E-50 T 25-04-2017 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 25-04-2017 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.707 T 25-04-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 4.9E-43 T 25-04-2017 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 SUPERFAMILY SSF55973 112 232 5.49E-52 T 25-04-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 2.3E-45 T 25-04-2017 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 25-04-2017 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Gene3D G3DSA:3.30.300.10 244 381 3.3E-71 T 25-04-2017 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 PIRSF PIRSF000497 1 382 1.8E-174 T 25-04-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 369 1.9E-69 T 25-04-2017 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 Gene3D G3DSA:3.30.300.10 136 233 6.2E-44 T 25-04-2017 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 SUPERFAMILY SSF55973 233 382 2.75E-71 T 25-04-2017 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS20315 1c002bf376fe44bc235b3ef2dba4b110 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 1.6E-199 T 25-04-2017 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 SMART SM00420 6 58 2.3E-23 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 Gene3D G3DSA:1.10.10.10 5 56 3.4E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 SUPERFAMILY SSF100950 77 233 5.96E-27 T 25-04-2017 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 SUPERFAMILY SSF46785 5 60 1.67E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 SMART SM01134 73 233 9.7E-70 T 25-04-2017 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 Gene3D G3DSA:3.40.50.1360 78 223 7.3E-10 T 25-04-2017 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 2.7E-18 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 7.6E-7 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 7.6E-7 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 Pfam PF00455 DeoR C terminal sensor domain 77 232 4.5E-50 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS07285 ec8574d058e2776374da68676b2afbee 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SMART SM00341 531 610 6.1E-26 T 25-04-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Pfam PF09382 RQC domain 406 516 7.5E-39 T 25-04-2017 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Gene3D G3DSA:3.40.50.300 206 344 1.8E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SMART SM00490 250 331 4.7E-28 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SMART SM00487 22 218 1.5E-30 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Pfam PF00270 DEAD/DEAH box helicase 28 185 1.6E-19 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 15 464 1.3E-195 T 25-04-2017 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Pfam PF16124 RecQ zinc-binding 343 404 1.1E-15 T 25-04-2017 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Pfam PF00570 HRDC domain 535 601 1.1E-23 T 25-04-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 14 603 3.0E-267 T 25-04-2017 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Pfam PF00271 Helicase conserved C-terminal domain 227 331 7.7E-19 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Gene3D G3DSA:1.10.10.10 345 516 7.1E-62 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Gene3D G3DSA:1.10.150.80 532 604 8.3E-23 T 25-04-2017 IPR002121 HRDC domain GO:0003676|GO:0005622 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SUPERFAMILY SSF52540 15 198 2.15E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 Gene3D G3DSA:3.40.50.300 14 204 5.0E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SMART SM00956 411 514 2.3E-54 T 25-04-2017 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SUPERFAMILY SSF47819 532 607 1.48E-25 T 25-04-2017 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 A4U88_RS00720 b79bbe198f8a3333db545394002f8de3 610 SUPERFAMILY SSF52540 208 454 3.42E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 SUPERFAMILY SSF47413 4 63 8.68E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 Gene3D G3DSA:1.10.260.40 6 57 1.2E-22 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 Gene3D G3DSA:3.40.50.2300 58 177 7.5E-35 T 25-04-2017 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 25-04-2017 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 SUPERFAMILY SSF53822 65 342 3.26E-60 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 2.5E-17 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 SMART SM00354 5 75 3.9E-31 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 Gene3D G3DSA:3.40.50.2300 178 322 2.6E-43 T 25-04-2017 A4U88_RS11065 f9c22751c6e6782ebf952248dc9c0ff6 343 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 323 7.5E-58 T 25-04-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain A4U88_RS10785 a68b467ce2c2941c71c0b4af79f519ac 115 Gene3D G3DSA:3.40.30.10 8 102 2.3E-32 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10785 a68b467ce2c2941c71c0b4af79f519ac 115 PIRSF PIRSF005894 1 108 1.7E-52 T 25-04-2017 IPR014434 Monothiol glutaredoxin A4U88_RS10785 a68b467ce2c2941c71c0b4af79f519ac 115 SUPERFAMILY SSF52833 2 102 3.13E-35 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10785 a68b467ce2c2941c71c0b4af79f519ac 115 Pfam PF00462 Glutaredoxin 17 81 1.1E-18 T 25-04-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 A4U88_RS10785 a68b467ce2c2941c71c0b4af79f519ac 115 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 5 101 3.3E-47 T 25-04-2017 IPR004480 Monothiol glutaredoxin-related A4U88_RS02375 e91928b0c0a63010f13f8a842d3db5f0 289 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 6.4E-155 T 25-04-2017 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 A4U88_RS02375 e91928b0c0a63010f13f8a842d3db5f0 289 SUPERFAMILY SSF53448 1 286 8.11E-89 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS02375 e91928b0c0a63010f13f8a842d3db5f0 289 Pfam PF00483 Nucleotidyl transferase 2 238 9.5E-68 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS02375 e91928b0c0a63010f13f8a842d3db5f0 289 Gene3D G3DSA:3.90.550.10 1 263 1.0E-62 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS21030 a2087037edf7d59eef3fde49143c7ad4 150 Pfam PF12680 SnoaL-like domain 36 132 8.3E-14 T 25-04-2017 IPR009959 Polyketide cyclase SnoaL-like domain A4U88_RS21030 a2087037edf7d59eef3fde49143c7ad4 150 SUPERFAMILY SSF54427 29 139 5.45E-24 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS21030 a2087037edf7d59eef3fde49143c7ad4 150 Gene3D G3DSA:3.10.450.50 29 114 1.1E-11 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS20630 b28cd56300c9848815713066d599c5a5 90 SUPERFAMILY SSF111148 1 89 2.09E-39 T 25-04-2017 IPR007457 Fe(II) trafficking protein YggX GO:0005506 A4U88_RS20630 b28cd56300c9848815713066d599c5a5 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 3.2E-39 T 25-04-2017 IPR007457 Fe(II) trafficking protein YggX GO:0005506 A4U88_RS20630 b28cd56300c9848815713066d599c5a5 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.677 T 25-04-2017 IPR007457 Fe(II) trafficking protein YggX GO:0005506 A4U88_RS20630 b28cd56300c9848815713066d599c5a5 90 PIRSF PIRSF029827 1 90 2.4E-43 T 25-04-2017 IPR007457 Fe(II) trafficking protein YggX GO:0005506 A4U88_RS20630 b28cd56300c9848815713066d599c5a5 90 Gene3D G3DSA:1.10.3880.10 1 90 3.4E-42 T 25-04-2017 A4U88_RS20630 b28cd56300c9848815713066d599c5a5 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 2.0E-35 T 25-04-2017 IPR007457 Fe(II) trafficking protein YggX GO:0005506 A4U88_RS01605 0da39dbf7bb986b6dbee070c459c6a7f 349 SUPERFAMILY SSF52540 112 339 1.56E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01605 0da39dbf7bb986b6dbee070c459c6a7f 349 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 73 333 4.9E-92 T 25-04-2017 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 A4U88_RS01605 0da39dbf7bb986b6dbee070c459c6a7f 349 Gene3D G3DSA:1.10.40.50 275 344 6.7E-26 T 25-04-2017 A4U88_RS01605 0da39dbf7bb986b6dbee070c459c6a7f 349 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 40 339 37.076 T 25-04-2017 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 A4U88_RS01605 0da39dbf7bb986b6dbee070c459c6a7f 349 Pfam PF03193 Protein of unknown function, DUF258 98 275 2.5E-54 T 25-04-2017 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 A4U88_RS01605 0da39dbf7bb986b6dbee070c459c6a7f 349 Gene3D G3DSA:3.40.50.300 113 274 1.2E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10810 bd60135f4c58deed793961b5c2d29811 545 Pfam PF00884 Sulfatase 237 525 1.0E-47 T 25-04-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 A4U88_RS10810 bd60135f4c58deed793961b5c2d29811 545 SUPERFAMILY SSF53649 237 530 1.06E-23 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS10810 bd60135f4c58deed793961b5c2d29811 545 Gene3D G3DSA:3.40.720.10 237 538 1.1E-16 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS10810 bd60135f4c58deed793961b5c2d29811 545 Pfam PF08019 Domain of unknown function (DUF1705) 56 208 1.0E-50 T 25-04-2017 IPR012549 Domain of unknown function DUF1705 GO:0016021 A4U88_RS00960 d15ffb6bc690c5b3c347d9fdfce6305b 260 SUPERFAMILY SSF52799 13 259 2.98E-52 T 25-04-2017 IPR029021 Protein-tyrosine phosphatase-like A4U88_RS00960 d15ffb6bc690c5b3c347d9fdfce6305b 260 Gene3D G3DSA:3.90.190.10 16 195 9.7E-15 T 25-04-2017 IPR029021 Protein-tyrosine phosphatase-like A4U88_RS00960 d15ffb6bc690c5b3c347d9fdfce6305b 260 Pfam PF13350 Tyrosine phosphatase family 13 260 3.0E-60 T 25-04-2017 IPR026893 Tyrosine/serine-protein phosphatase IphP-type A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 SUPERFAMILY SSF52540 8 232 8.14E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 Gene3D G3DSA:3.40.50.300 258 494 3.6E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 Gene3D G3DSA:3.40.50.300 7 236 2.5E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 SMART SM00382 34 229 8.2E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 SMART SM00382 284 479 3.8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 SUPERFAMILY SSF52540 249 489 3.4E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 Pfam PF00005 ABC transporter 276 430 9.8E-17 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS07575 12bf6fa56da07a6276f5fca69381fab8 502 Pfam PF00005 ABC transporter 25 174 5.4E-28 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS02450 4333870d904bc9f25befac42518da840 136 Gene3D G3DSA:3.40.630.30 40 118 6.8E-15 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02450 4333870d904bc9f25befac42518da840 136 SUPERFAMILY SSF55729 32 113 2.3E-10 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 4.2E-5 T 25-04-2017 A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 1.7E-29 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 1.7E-29 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.7E-29 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.7E-29 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 1.7E-29 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 SUPERFAMILY SSF51735 1 246 9.72E-69 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 Gene3D G3DSA:3.40.50.720 1 246 4.2E-70 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS09265 363848299f511c5d07b62159563dfc83 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 246 2.8E-53 T 25-04-2017 A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 Gene3D G3DSA:3.40.190.10 213 252 1.1E-31 T 25-04-2017 A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 Gene3D G3DSA:3.40.190.10 27 116 1.1E-31 T 25-04-2017 A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 Gene3D G3DSA:3.40.190.10 146 201 4.2E-5 T 25-04-2017 A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 SMART SM00062 30 254 3.7E-40 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 251 3.5E-43 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 SUPERFAMILY SSF53850 4 251 2.95E-52 T 25-04-2017 A4U88_RS21845 b42ca140fc17a836fe41310b6d254b0a 255 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 421 510 6.8E-23 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 463 480 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 Pfam PF02378 Phosphotransferase system, EIIC 19 361 2.0E-83 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 SUPERFAMILY SSF55604 453 523 3.14E-19 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 Gene3D G3DSA:3.30.1360.60 453 524 4.3E-25 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 8 523 8.3E-256 T 25-04-2017 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 A4U88_RS11060 9cfb50967a69a6a3a65853f4db659f5d 539 Pfam PF00367 phosphotransferase system, EIIB 454 485 1.9E-13 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS20400 67b222f0169f4e4f7b9595d6b16ae343 264 Gene3D G3DSA:3.20.20.60 1 263 1.2E-111 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS20400 67b222f0169f4e4f7b9595d6b16ae343 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 42.155 T 25-04-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 A4U88_RS20400 67b222f0169f4e4f7b9595d6b16ae343 264 PIRSF PIRSF000388 1 264 7.0E-101 T 25-04-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 A4U88_RS20400 67b222f0169f4e4f7b9595d6b16ae343 264 SUPERFAMILY SSF51621 4 263 3.27E-106 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS20400 67b222f0169f4e4f7b9595d6b16ae343 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 258 4.8E-108 T 25-04-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 A4U88_RS20400 67b222f0169f4e4f7b9595d6b16ae343 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 263 2.9E-121 T 25-04-2017 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 A4U88_RS07800 b99cf83ec9d28597438741cf60e84e9e 381 Gene3D G3DSA:3.40.50.2000 200 348 1.1E-20 T 25-04-2017 A4U88_RS07800 b99cf83ec9d28597438741cf60e84e9e 381 Pfam PF00534 Glycosyl transferases group 1 201 349 4.9E-26 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS07800 b99cf83ec9d28597438741cf60e84e9e 381 Pfam PF13439 Glycosyltransferase Family 4 16 174 8.1E-10 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS07800 b99cf83ec9d28597438741cf60e84e9e 381 SUPERFAMILY SSF53756 2 379 1.03E-66 T 25-04-2017 A4U88_RS08590 3bc1dd25c9ce6a00af91413c7182a72d 221 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 21 214 9.0E-52 T 25-04-2017 IPR018635 Uncharacterised protein family UPF0319 A4U88_RS08590 3bc1dd25c9ce6a00af91413c7182a72d 221 Hamap MF_00789 UPF0319 protein YccT [yccT]. 2 217 26.123 T 25-04-2017 IPR018635 Uncharacterised protein family UPF0319 A4U88_RS23075 420592806668c781f6036c9f86e22ccb 336 SUPERFAMILY SSF51430 10 323 5.5E-61 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS23075 420592806668c781f6036c9f86e22ccb 336 Gene3D G3DSA:3.20.20.100 10 323 3.4E-55 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS23075 420592806668c781f6036c9f86e22ccb 336 Pfam PF00248 Aldo/keto reductase family 10 323 4.4E-48 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS08130 b8c569bdbd5ff740175c4a41d6aacf3c 107 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.898 T 25-04-2017 IPR002765 Uncharacterised protein family UPF0145 A4U88_RS08130 b8c569bdbd5ff740175c4a41d6aacf3c 107 Pfam PF01906 Putative heavy-metal-binding 1 105 1.2E-40 T 25-04-2017 IPR002765 Uncharacterised protein family UPF0145 A4U88_RS08130 b8c569bdbd5ff740175c4a41d6aacf3c 107 SUPERFAMILY SSF117782 1 105 1.31E-38 T 25-04-2017 IPR002765 Uncharacterised protein family UPF0145 A4U88_RS08130 b8c569bdbd5ff740175c4a41d6aacf3c 107 Gene3D G3DSA:3.30.110.70 1 105 2.6E-39 T 25-04-2017 IPR002765 Uncharacterised protein family UPF0145 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Hamap MF_00671 Protein TolB [tolB]. 5 426 34.788 T 25-04-2017 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF04052 TolB amino-terminal domain 23 122 1.3E-32 T 25-04-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 15 427 1.7E-163 T 25-04-2017 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Gene3D G3DSA:3.40.50.10070 22 152 5.6E-52 T 25-04-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 SUPERFAMILY SSF52964 28 161 1.31E-40 T 25-04-2017 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 281 315 9.4E-13 T 25-04-2017 IPR011659 WD40-like Beta Propeller A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 4.2E-5 T 25-04-2017 IPR011659 WD40-like Beta Propeller A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.7E-9 T 25-04-2017 IPR011659 WD40-like Beta Propeller A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Pfam PF07676 WD40-like Beta Propeller Repeat 369 398 0.0011 T 25-04-2017 IPR011659 WD40-like Beta Propeller A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 Gene3D G3DSA:2.130.10.10 153 428 1.2E-74 T 25-04-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 A4U88_RS06035 929b2ebce02637f9eecd2a61fba7a654 430 SUPERFAMILY SSF69304 155 428 2.48E-55 T 25-04-2017 A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 Gene3D G3DSA:3.30.390.10 1 177 1.9E-89 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 244 275 - T 25-04-2017 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 SUPERFAMILY SSF54826 3 138 3.54E-38 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 Pfam PF13378 Enolase C-terminal domain-like 201 415 4.1E-58 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 SMART SM00922 198 294 1.5E-24 T 25-04-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 SUPERFAMILY SSF51604 183 424 2.36E-70 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 Gene3D G3DSA:3.20.20.120 181 423 1.1E-94 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS02750 59ace2ccee1d2a2ed8af69ccf7522c30 425 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 135 2.4E-5 T 25-04-2017 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 211 5.8E-79 T 25-04-2017 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 25-04-2017 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 2.6E-112 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 3.1E-49 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 3.1E-49 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 3.1E-49 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 3.1E-49 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 3.1E-49 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 SUPERFAMILY SSF53850 5 218 4.52E-85 T 25-04-2017 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 PIRSF PIRSF001438 1 311 2.3E-122 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.646 T 25-04-2017 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 SUPERFAMILY SSF54782 220 309 1.22E-28 T 25-04-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 Gene3D G3DSA:3.40.190.10 111 199 2.4E-40 T 25-04-2017 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 Gene3D G3DSA:3.30.160.40 221 305 3.1E-29 T 25-04-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 Gene3D G3DSA:3.40.190.10 3 110 1.0E-47 T 25-04-2017 A4U88_RS00645 0ee64a859dfb335d4efb50f968ce4370 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 295 2.1E-22 T 25-04-2017 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:3.30.70.370 822 932 3.2E-67 T 25-04-2017 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:3.30.70.370 667 714 3.2E-67 T 25-04-2017 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Pfam PF01612 3'-5' exonuclease 333 519 1.6E-44 T 25-04-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SUPERFAMILY SSF88723 7 170 1.4E-57 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:1.10.150.20 715 821 3.8E-37 T 25-04-2017 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:1.20.1060.10 546 666 1.7E-36 T 25-04-2017 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SMART SM00482 689 896 5.2E-117 T 25-04-2017 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 733 746 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 696 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 726 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 658 680 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 879 892 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 848 864 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 782 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 816 827 7.5E-80 T 25-04-2017 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 2.0E-54 T 25-04-2017 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SMART SM00279 173 208 9.6E-14 T 25-04-2017 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SMART SM00475 7 268 3.2E-139 T 25-04-2017 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 TIGRFAM TIGR00593 pola: DNA polymerase I 9 932 4.4E-283 T 25-04-2017 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 1.5E-30 T 25-04-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:3.40.50.1010 8 186 4.0E-72 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SMART SM00474 333 520 1.9E-48 T 25-04-2017 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SUPERFAMILY SSF47807 171 291 1.23E-31 T 25-04-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:3.30.420.10 333 545 1.2E-85 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 ProSitePatterns PS00447 DNA polymerase family A signature. 757 776 - T 25-04-2017 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SUPERFAMILY SSF53098 330 521 1.38E-57 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 SUPERFAMILY SSF56672 525 932 4.0E-159 T 25-04-2017 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Pfam PF00476 DNA polymerase family A 555 930 6.5E-155 T 25-04-2017 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS23960 c3cf7a02d49ee8fb5462b1a321e3fb28 932 Gene3D G3DSA:1.10.150.20 187 253 2.6E-25 T 25-04-2017 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Pfam PF00583 Acetyltransferase (GNAT) family 786 859 6.6E-11 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 1.4E-45 T 25-04-2017 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SUPERFAMILY SSF55729 614 678 2.23E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SUPERFAMILY SSF55729 723 861 2.23E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SUPERFAMILY SSF56059 481 690 5.5E-28 T 25-04-2017 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Pfam PF13549 ATP-grasp domain 472 694 5.4E-75 T 25-04-2017 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SMART SM00881 9 104 3.6E-24 T 25-04-2017 IPR003781 CoA-binding GO:0048037 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Gene3D G3DSA:3.40.630.30 720 874 8.7E-27 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Gene3D G3DSA:3.40.50.261 278 439 1.1E-15 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Gene3D G3DSA:3.40.50.261 128 277 6.8E-24 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SUPERFAMILY SSF52210 287 447 1.15E-38 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SUPERFAMILY SSF52210 125 286 3.66E-35 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Gene3D G3DSA:3.40.50.720 1 127 4.2E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 SUPERFAMILY SSF51735 2 135 1.48E-31 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Gene3D G3DSA:3.30.470.20 486 530 8.9E-4 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS19055 09c4102e04078e912836fe2707f49878 882 Pfam PF13380 CoA binding domain 13 129 6.7E-21 T 25-04-2017 IPR003781 CoA-binding GO:0048037 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 Gene3D G3DSA:3.40.50.1000 449 569 1.5E-35 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF81660 322 456 3.92E-37 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 379 610 1.4E-47 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 347 4.1E-35 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 41.394 T 25-04-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 Gene3D G3DSA:2.70.150.10 50 208 1.6E-25 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 682 0.0 T 25-04-2017 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 25-04-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF81665 208 305 9.29E-11 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF81665 30 103 9.29E-11 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 Pfam PF00122 E1-E2 ATPase 72 302 4.1E-41 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF81653 111 207 1.31E-22 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 3.1E-35 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 Gene3D G3DSA:3.40.1110.10 322 448 7.3E-56 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 3.9E-24 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.9E-24 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 3.9E-24 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.9E-24 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 3.9E-24 T 25-04-2017 A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF56784 299 323 5.76E-38 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF56784 441 565 5.76E-38 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05870 25de03338f52afc3acaa38278f036ac3 689 SUPERFAMILY SSF56784 391 410 5.76E-38 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04070 58d042bff9e1be4cc7b156f81f8b37c8 204 SMART SM01007 8 196 2.1E-49 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS04070 58d042bff9e1be4cc7b156f81f8b37c8 204 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 195 1.5E-41 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS04070 58d042bff9e1be4cc7b156f81f8b37c8 204 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 204 120.91 T 25-04-2017 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|Reactome: R-HSA-1237112 A4U88_RS04070 58d042bff9e1be4cc7b156f81f8b37c8 204 SUPERFAMILY SSF53639 3 200 6.08E-46 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS04070 58d042bff9e1be4cc7b156f81f8b37c8 204 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 10 199 8.7E-71 T 25-04-2017 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|KEGG: 00400+4.2.1.10|MetaCyc: PWY-4361|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|Reactome: R-HSA-1237112 A4U88_RS04070 58d042bff9e1be4cc7b156f81f8b37c8 204 Gene3D G3DSA:3.40.225.10 8 201 2.6E-46 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 SUPERFAMILY SSF52540 1 141 1.43E-39 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 35.537 T 25-04-2017 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 SUPERFAMILY SSF57716 142 191 1.33E-17 T 25-04-2017 A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 Pfam PF00265 Thymidine kinase 2 186 4.5E-62 T 25-04-2017 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 25-04-2017 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 PIRSF PIRSF035805 1 193 1.7E-58 T 25-04-2017 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 A4U88_RS13210 4dabf34bf15e16a9a6b013f08ea4afd2 194 Gene3D G3DSA:3.30.60.20 142 190 4.3E-21 T 25-04-2017 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 SUPERFAMILY SSF46626 192 299 3.84E-16 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 PIRSF PIRSF000018 21 434 1.2E-134 T 25-04-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 SUPERFAMILY SSF46626 334 432 1.31E-16 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 Gene3D G3DSA:1.10.760.10 334 433 2.2E-16 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 SUPERFAMILY SSF46626 32 171 1.12E-25 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 Gene3D G3DSA:1.10.760.10 190 299 3.1E-11 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 Gene3D G3DSA:1.10.760.10 48 149 1.0E-14 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 333 412 1.0E-8 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS11400 824320b4fc44e18340be86dcbf7c9885 434 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 50 146 2.8E-5 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.520.10 709 731 2.1E-64 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.520.10 428 584 2.1E-64 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.420.10 585 705 2.3E-43 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Pfam PF00141 Peroxidase 66 390 3.0E-47 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Pfam PF00141 Peroxidase 398 703 1.8E-38 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 263 286 2.5E-55 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 23 45 2.5E-55 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 476 502 2.5E-55 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 49 62 2.5E-55 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 64 89 2.5E-55 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.420.10 247 270 2.7E-45 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.420.10 306 403 2.7E-45 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 14 730 0.0 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 255 265 - T 25-04-2017 IPR019793 Peroxidases heam-ligand binding site Reactome: R-HSA-2408557 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Hamap MF_01961 Catalase-peroxidase [katG]. 2 731 42.208 T 25-04-2017 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00458 Haem peroxidase superfamily signature 147 164 9.2E-18 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00458 Haem peroxidase superfamily signature 314 329 9.2E-18 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00458 Haem peroxidase superfamily signature 87 101 9.2E-18 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00458 Haem peroxidase superfamily signature 255 270 9.2E-18 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 PRINTS PR00458 Haem peroxidase superfamily signature 165 177 9.2E-18 T 25-04-2017 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.520.10 223 246 4.5E-72 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 Gene3D G3DSA:1.10.520.10 44 186 4.5E-72 T 25-04-2017 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 ProSitePatterns PS00436 Peroxidases active site signature. 87 98 - T 25-04-2017 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 SUPERFAMILY SSF48113 426 730 2.95E-114 T 25-04-2017 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS15930 276d37de96872f92b99d2fde503625fb 731 SUPERFAMILY SSF48113 17 425 8.4E-153 T 25-04-2017 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 Hamap MF_00013 Octanoyltransferase [lipB]. 8 209 36.887 T 25-04-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 74 89 - T 25-04-2017 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 Pfam PF03099 Biotin/lipoate A/B protein ligase family 65 162 3.6E-6 T 25-04-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 Gene3D G3DSA:3.90.1550.10 7 206 9.0E-71 T 25-04-2017 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 PIRSF PIRSF016262 4 218 2.1E-56 T 25-04-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 78 131 4.0E-20 T 25-04-2017 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 SUPERFAMILY SSF55681 7 209 5.55E-68 T 25-04-2017 A4U88_RS05595 d884b39a144f2b965e9af8b1c6304cb5 222 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 31 207 9.4E-72 T 25-04-2017 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 1.6E-24 T 25-04-2017 IPR020069 Ribosomal protein L9, C-terminal A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.29 T 25-04-2017 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 3.2E-58 T 25-04-2017 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 SUPERFAMILY SSF55658 1 57 4.01E-19 T 25-04-2017 IPR009027 Ribosomal protein L9/RNase H1, N-terminal A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 SUPERFAMILY SSF55653 60 149 3.92E-25 T 25-04-2017 IPR020069 Ribosomal protein L9, C-terminal A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 Gene3D G3DSA:3.10.430.100 61 149 1.4E-27 T 25-04-2017 IPR020069 Ribosomal protein L9, C-terminal A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 25-04-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 Gene3D G3DSA:3.40.5.10 1 52 2.6E-25 T 25-04-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01755 796e6a646b36e97c6d6c11e49eb8b7f6 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 3.9E-22 T 25-04-2017 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 287 1.5E-27 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 Pfam PF01545 Cation efflux family 15 206 5.4E-43 T 25-04-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 Gene3D G3DSA:1.20.1510.10 12 206 8.6E-44 T 25-04-2017 IPR027469 Cation efflux protein transmembrane domain A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 Gene3D G3DSA:3.30.70.1350 207 288 1.0E-32 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 288 9.2E-76 T 25-04-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 SUPERFAMILY SSF160240 209 288 4.71E-26 T 25-04-2017 A4U88_RS23625 660a53c45d4dd835307f061568fa2485 300 SUPERFAMILY SSF161111 8 207 9.55E-50 T 25-04-2017 A4U88_RS07665 c0261e63624a68bfd10bc0e7f5597ab6 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 273 6.8E-99 T 25-04-2017 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 A4U88_RS07665 c0261e63624a68bfd10bc0e7f5597ab6 297 Gene3D G3DSA:3.90.550.10 3 282 1.1E-63 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS07665 c0261e63624a68bfd10bc0e7f5597ab6 297 Pfam PF00483 Nucleotidyl transferase 5 252 5.7E-21 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS07665 c0261e63624a68bfd10bc0e7f5597ab6 297 SUPERFAMILY SSF53448 1 293 1.58E-57 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 Gene3D G3DSA:3.40.50.300 1 212 8.7E-81 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 SMART SM00487 20 223 1.1E-60 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 Gene3D G3DSA:3.40.50.300 213 373 8.1E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 SMART SM00490 259 340 7.4E-32 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 25-04-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 SUPERFAMILY SSF52540 75 361 1.96E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 455 51.478 T 25-04-2017 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 Pfam PF00271 Helicase conserved C-terminal domain 235 339 5.1E-26 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS06355 c233ab8a3c2c0712fd4a153ef9806665 459 Pfam PF00270 DEAD/DEAH box helicase 25 196 3.0E-49 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS08105 5b0fbce77e94a2abb7d56ada8a592dd6 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 215 1.5E-13 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08105 5b0fbce77e94a2abb7d56ada8a592dd6 222 Gene3D G3DSA:1.10.3720.10 4 214 2.9E-36 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08105 5b0fbce77e94a2abb7d56ada8a592dd6 222 SUPERFAMILY SSF161098 6 200 2.22E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08105 5b0fbce77e94a2abb7d56ada8a592dd6 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 1.1E-16 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS11120 40d5629bc4578c04b5bf733bab504704 229 SUPERFAMILY SSF46785 1 62 7.74E-10 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11120 40d5629bc4578c04b5bf733bab504704 229 Gene3D G3DSA:1.10.10.10 1 63 2.9E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11120 40d5629bc4578c04b5bf733bab504704 229 Pfam PF08279 HTH domain 6 59 2.8E-15 T 25-04-2017 IPR013196 Helix-turn-helix, type 11 A4U88_RS11120 40d5629bc4578c04b5bf733bab504704 229 Pfam PF13280 WYL domain 141 226 3.0E-14 T 25-04-2017 IPR026881 WYL domain A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.50.100 1156 1209 4.6E-5 T 25-04-2017 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 3.7E-77 T 25-04-2017 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 SUPERFAMILY SSF64484 1133 1364 0.0 T 25-04-2017 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 SUPERFAMILY SSF64484 16 944 0.0 T 25-04-2017 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 1.6E-26 T 25-04-2017 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 SMART SM00663 235 514 1.1E-184 T 25-04-2017 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 2.2E-89 T 25-04-2017 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.40.20 417 489 2.8E-37 T 25-04-2017 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Gene3D G3DSA:2.40.40.20 349 376 2.8E-37 T 25-04-2017 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 13 684 32.158 T 25-04-2017 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1367 0.0 T 25-04-2017 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 1.8E-18 T 25-04-2017 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1377 10.436 T 25-04-2017 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 485 3.8E-27 T 25-04-2017 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS01175 13cf13eff0eeb54fdc40c65368356524 1407 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 393 1.2E-7 T 25-04-2017 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 A4U88_RS05385 34e73140e8c0011fa8193bdb047655da 383 SUPERFAMILY SSF53335 117 370 1.02E-77 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS05385 34e73140e8c0011fa8193bdb047655da 383 PIRSF PIRSF003085 4 378 3.2E-126 T 25-04-2017 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 A4U88_RS05385 34e73140e8c0011fa8193bdb047655da 383 Gene3D G3DSA:3.40.50.150 108 371 5.7E-96 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS05385 34e73140e8c0011fa8193bdb047655da 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 2.0E-101 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS06660 ba01ce13a862b6c38180b020ea961a6f 113 SMART SM00507 15 70 1.4E-5 T 25-04-2017 IPR003615 HNH nuclease A4U88_RS06660 ba01ce13a862b6c38180b020ea961a6f 113 Pfam PF01844 HNH endonuclease 27 75 9.2E-12 T 25-04-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 188 488 8.4E-116 T 25-04-2017 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 PIRSF PIRSF000110 1 491 2.0E-182 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 176 182 - T 25-04-2017 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 Gene3D G3DSA:3.40.50.720 7 185 7.5E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 236 252 5.9E-47 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 166 194 5.9E-47 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 218 235 5.9E-47 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 327 353 5.9E-47 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 142 155 5.9E-47 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 9 489 90.787 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 SUPERFAMILY SSF55347 176 488 3.6E-113 T 25-04-2017 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 186 2.5E-59 T 25-04-2017 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 9 489 3.8E-200 T 25-04-2017 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 Gene3D G3DSA:3.30.360.10 186 487 1.3E-121 T 25-04-2017 A4U88_RS13540 6c4315ef82786dc26eb0bbdaf46f7136 491 SUPERFAMILY SSF51735 5 189 1.0E-57 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 SUPERFAMILY SSF55781 86 268 2.75E-46 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 Pfam PF01614 Bacterial transcriptional regulator 139 264 2.5E-41 T 25-04-2017 IPR014757 Transcription regulator IclR, C-terminal A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 Pfam PF09339 IclR helix-turn-helix domain 21 71 6.5E-13 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 SUPERFAMILY SSF46785 20 93 3.16E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 SMART SM00346 19 109 1.9E-38 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 Gene3D G3DSA:1.10.10.10 12 87 1.4E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20065 fce4e134ea74a305d22cece002777720 272 Gene3D G3DSA:3.30.450.40 88 268 3.3E-56 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS04050 a1faccb721c5a9c52301a66348b3880d 414 Pfam PF00266 Aminotransferase class-V 17 352 1.0E-22 T 25-04-2017 IPR000192 Aminotransferase class V domain A4U88_RS04050 a1faccb721c5a9c52301a66348b3880d 414 SUPERFAMILY SSF53383 9 392 1.55E-89 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS04050 a1faccb721c5a9c52301a66348b3880d 414 Gene3D G3DSA:3.40.640.10 26 284 1.7E-60 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS04050 a1faccb721c5a9c52301a66348b3880d 414 PIRSF PIRSF000524 9 411 5.7E-104 T 25-04-2017 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 A4U88_RS04050 a1faccb721c5a9c52301a66348b3880d 414 Gene3D G3DSA:3.90.1150.10 285 393 1.3E-33 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS20635 be9ec2022862a4a1c73622b1310b0b6f 358 Gene3D G3DSA:1.10.530.10 186 357 1.8E-42 T 25-04-2017 A4U88_RS20635 be9ec2022862a4a1c73622b1310b0b6f 358 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 1 357 61.203 T 25-04-2017 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 A4U88_RS20635 be9ec2022862a4a1c73622b1310b0b6f 358 SUPERFAMILY SSF53955 153 357 1.89E-38 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS20635 be9ec2022862a4a1c73622b1310b0b6f 358 Pfam PF01464 Transglycosylase SLT domain 194 315 3.9E-33 T 25-04-2017 IPR008258 Transglycosylase SLT domain 1 A4U88_RS20635 be9ec2022862a4a1c73622b1310b0b6f 358 Pfam PF11873 Domain of unknown function (DUF3393) 3 190 3.7E-78 T 25-04-2017 IPR024570 Murein transglycosylase-C, N-terminal A4U88_RS20635 be9ec2022862a4a1c73622b1310b0b6f 358 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 212 240 - T 25-04-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 A4U88_RS09230 3444edc4b04fdaa71465cb0a5853b81d 213 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 25-04-2017 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 A4U88_RS09230 3444edc4b04fdaa71465cb0a5853b81d 213 SUPERFAMILY SSF52540 1 206 2.32E-50 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09230 3444edc4b04fdaa71465cb0a5853b81d 213 Gene3D G3DSA:3.40.50.300 3 207 1.6E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09230 3444edc4b04fdaa71465cb0a5853b81d 213 Pfam PF02223 Thymidylate kinase 8 198 1.1E-55 T 25-04-2017 A4U88_RS09230 3444edc4b04fdaa71465cb0a5853b81d 213 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 27.201 T 25-04-2017 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 A4U88_RS09230 3444edc4b04fdaa71465cb0a5853b81d 213 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 4.9E-61 T 25-04-2017 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 A4U88_RS11310 b053a74d8f383076ab34d4e4acfa74d6 436 Gene3D G3DSA:1.20.1250.20 21 224 2.7E-43 T 25-04-2017 A4U88_RS11310 b053a74d8f383076ab34d4e4acfa74d6 436 SUPERFAMILY SSF103473 16 430 2.09E-80 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11310 b053a74d8f383076ab34d4e4acfa74d6 436 Pfam PF07690 Major Facilitator Superfamily 31 393 3.8E-41 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS11310 b053a74d8f383076ab34d4e4acfa74d6 436 Gene3D G3DSA:1.20.1250.20 248 428 1.2E-15 T 25-04-2017 A4U88_RS00550 9949198777f955f4868173baf79cbc71 350 Pfam PF02706 Chain length determinant protein 16 78 7.9E-11 T 25-04-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 A4U88_RS00550 9949198777f955f4868173baf79cbc71 350 Gene3D G3DSA:3.30.1890.10 259 320 1.8E-85 T 25-04-2017 A4U88_RS00550 9949198777f955f4868173baf79cbc71 350 Gene3D G3DSA:3.30.1890.10 55 223 1.8E-85 T 25-04-2017 A4U88_RS00550 9949198777f955f4868173baf79cbc71 350 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 9 349 58.485 T 25-04-2017 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 A4U88_RS00550 9949198777f955f4868173baf79cbc71 350 SUPERFAMILY SSF160355 55 320 6.28E-82 T 25-04-2017 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 SMART SM00091 7 75 1.6E-5 T 25-04-2017 IPR000014 PAS domain A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 Gene3D G3DSA:3.30.565.10 198 348 6.9E-37 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 Pfam PF00989 PAS fold 11 97 1.4E-6 T 25-04-2017 IPR013767 PAS fold GO:0006355 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 2.1E-14 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 Gene3D G3DSA:1.10.287.130 129 186 5.2E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 190 1.7E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 SUPERFAMILY SSF55874 198 346 1.83E-35 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 6.7E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 6.7E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 6.7E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 Gene3D G3DSA:3.30.450.20 11 101 2.7E-19 T 25-04-2017 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 SUPERFAMILY SSF47384 121 190 1.12E-12 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 SMART SM00388 129 194 6.2E-15 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 SMART SM00387 233 349 3.1E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS23925 94e76114d2df532c5582a29951430a5d 349 SUPERFAMILY SSF55785 11 99 4.35E-5 T 25-04-2017 IPR000014 PAS domain A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 SUPERFAMILY SSF52540 1 240 5.59E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 SMART SM00382 26 213 4.4E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 Gene3D G3DSA:3.40.50.300 1 235 1.1E-77 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 Gene3D G3DSA:3.10.580.10 267 306 7.3E-5 T 25-04-2017 A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 SUPERFAMILY SSF54631 267 305 2.88E-6 T 25-04-2017 A4U88_RS07000 aa27f9ca2397c4bfb535d0dff3de2d1c 311 Pfam PF00005 ABC transporter 18 163 2.8E-31 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06625 ba3cf7fc6194b89812e2c4e6197c5702 241 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 20 239 2.7E-84 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS06625 ba3cf7fc6194b89812e2c4e6197c5702 241 SUPERFAMILY SSF54197 20 239 1.13E-82 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS06625 ba3cf7fc6194b89812e2c4e6197c5702 241 PIRSF PIRSF001273 8 241 2.4E-76 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS06625 ba3cf7fc6194b89812e2c4e6197c5702 241 Gene3D G3DSA:3.30.428.30 18 239 4.4E-87 T 25-04-2017 A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 Gene3D G3DSA:3.30.70.1450 290 359 3.7E-10 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 552 54.694 T 25-04-2017 IPR023018 Transport protein YidE, putative A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 Pfam PF06826 Predicted Permease Membrane Region 374 546 1.4E-45 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 Pfam PF06826 Predicted Permease Membrane Region 11 179 4.2E-44 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 SUPERFAMILY SSF116726 287 360 6.93E-13 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 Pfam PF02080 TrkA-C domain 293 359 7.9E-11 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 SUPERFAMILY SSF116726 207 271 6.28E-8 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 Gene3D G3DSA:3.30.70.1450 214 278 4.5E-5 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 1.1E-48 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS00060 c925342d00321de498ef15d1212273d3 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 5.5E-40 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 SMART SM01086 766 858 3.5E-4 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Gene3D G3DSA:3.40.50.300 550 777 4.0E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Gene3D G3DSA:1.10.8.60 778 856 2.8E-7 T 25-04-2017 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 SUPERFAMILY SSF52540 544 836 1.51E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 225 356 3.5E-10 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Gene3D G3DSA:1.10.8.60 366 447 4.7E-25 T 25-04-2017 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Gene3D G3DSA:3.40.50.300 183 364 6.5E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Pfam PF07724 AAA domain (Cdc48 subfamily) 594 761 8.9E-35 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 SMART SM00382 595 742 1.9E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 SMART SM00382 220 365 1.1E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 706 720 1.1E-27 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 1.1E-27 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 644 662 1.1E-27 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 617 1.1E-27 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 838 3.3E-8 T 25-04-2017 IPR019489 Clp ATPase, C-terminal A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Gene3D G3DSA:1.10.1780.10 8 130 3.6E-14 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 22 73 9.6E-7 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 SUPERFAMILY SSF81923 15 130 1.07E-14 T 25-04-2017 IPR004176 Clp, N-terminal GO:0019538 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 15 850 0.0 T 25-04-2017 IPR017729 Type VI secretion system, ATPase ClpV1 A4U88_RS15540 101b11ff1301bc96095b9f0b326daf8b 861 SUPERFAMILY SSF52540 180 503 2.67E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 SUPERFAMILY SSF53822 75 340 5.89E-42 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 45 2.4E-8 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 Gene3D G3DSA:3.40.50.2300 172 339 1.0E-38 T 25-04-2017 A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 Gene3D G3DSA:1.10.260.40 6 46 4.2E-12 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 Pfam PF13377 Periplasmic binding protein-like domain 173 338 7.1E-28 T 25-04-2017 A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 SMART SM00354 4 54 0.0017 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 Gene3D G3DSA:3.40.50.2300 74 171 7.6E-12 T 25-04-2017 A4U88_RS18340 3ad5a10c590bff3dceb4f133c0a3ff44 360 SUPERFAMILY SSF47413 4 58 5.96E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 9.3E-29 T 25-04-2017 IPR025158 Mg chelatase-related protein, C-terminal domain A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 Gene3D G3DSA:3.30.230.10 6 168 4.4E-27 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 SUPERFAMILY SSF52540 188 504 2.68E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.4E-44 T 25-04-2017 A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 SMART SM00382 210 390 2.3E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 3.1E-214 T 25-04-2017 IPR004482 Mg chelatase-related protein A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 SUPERFAMILY SSF54211 10 169 2.84E-30 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 1.6E-5 T 25-04-2017 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 1.6E-5 T 25-04-2017 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 1.6E-5 T 25-04-2017 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 Gene3D G3DSA:3.40.50.300 190 387 8.4E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23375 f2ead23b5a3025a2c82d6b1eea42a3a6 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 390 8.2E-91 T 25-04-2017 IPR000523 Magnesium chelatase ChlI domain A4U88_RS03185 0bbcd449b6f6f3cf94fcf6ac492b38a8 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 34 321 5.3E-108 T 25-04-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS03185 0bbcd449b6f6f3cf94fcf6ac492b38a8 330 SUPERFAMILY SSF53659 5 327 4.91E-118 T 25-04-2017 A4U88_RS03185 0bbcd449b6f6f3cf94fcf6ac492b38a8 330 Gene3D G3DSA:3.40.718.10 2 325 1.1E-135 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS03185 0bbcd449b6f6f3cf94fcf6ac492b38a8 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 3 325 36.568 T 25-04-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS03185 0bbcd449b6f6f3cf94fcf6ac492b38a8 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 324 2.7E-130 T 25-04-2017 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS03070 771733107c550f1ceb75c6a6a8fde07c 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 2.8E-31 T 25-04-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03070 771733107c550f1ceb75c6a6a8fde07c 87 SUPERFAMILY SSF46992 3 86 2.22E-31 T 25-04-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03070 771733107c550f1ceb75c6a6a8fde07c 87 Pfam PF01649 Ribosomal protein S20 2 84 1.7E-29 T 25-04-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03070 771733107c550f1ceb75c6a6a8fde07c 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 3.0E-24 T 25-04-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03070 771733107c550f1ceb75c6a6a8fde07c 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.714 T 25-04-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03070 771733107c550f1ceb75c6a6a8fde07c 87 Gene3D G3DSA:1.20.58.110 3 87 3.2E-32 T 25-04-2017 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS11550 05071f1bbf6ef669a1b3526b1a20863e 132 Gene3D G3DSA:3.30.530.20 1 131 4.9E-53 T 25-04-2017 IPR023393 START-like domain A4U88_RS11550 05071f1bbf6ef669a1b3526b1a20863e 132 SUPERFAMILY SSF55961 1 131 1.69E-31 T 25-04-2017 A4U88_RS21930 e03eec3ba30cadc6dc72f24489578616 460 SUPERFAMILY SSF103473 18 454 1.83E-67 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS21930 e03eec3ba30cadc6dc72f24489578616 460 Gene3D G3DSA:1.20.1250.20 262 451 1.6E-18 T 25-04-2017 A4U88_RS21930 e03eec3ba30cadc6dc72f24489578616 460 Gene3D G3DSA:1.20.1250.20 33 236 1.9E-22 T 25-04-2017 A4U88_RS21930 e03eec3ba30cadc6dc72f24489578616 460 Pfam PF00083 Sugar (and other) transporter 79 454 2.2E-26 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS20905 422465a0bbac954990707d87599abd9e 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 15 199 2.3E-74 T 25-04-2017 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 A4U88_RS20905 422465a0bbac954990707d87599abd9e 210 Gene3D G3DSA:3.90.79.10 7 208 2.2E-55 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS20905 422465a0bbac954990707d87599abd9e 210 SUPERFAMILY SSF55811 9 207 6.36E-50 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS20905 422465a0bbac954990707d87599abd9e 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS20905 422465a0bbac954990707d87599abd9e 210 Pfam PF00293 NUDIX domain 59 179 1.1E-10 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 SUPERFAMILY SSF55811 3 142 2.17E-23 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 126 139 1.3E-44 T 25-04-2017 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 20 41 1.3E-44 T 25-04-2017 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 3 20 1.3E-44 T 25-04-2017 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 71 90 1.3E-44 T 25-04-2017 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 PRINTS PR01404 DATP pyrophosphohydrolase signature 99 120 1.3E-44 T 25-04-2017 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 Pfam PF00293 NUDIX domain 5 140 1.2E-16 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS13605 716c5505f58ca8d4297a4332a3f627c7 148 Gene3D G3DSA:3.90.79.10 2 143 1.8E-29 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 SUPERFAMILY SSF103473 259 492 6.93E-30 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 SUPERFAMILY SSF103473 19 212 6.93E-30 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 152 164 - T 25-04-2017 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 77 101 - T 25-04-2017 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 Gene3D G3DSA:1.20.1250.20 275 482 3.4E-10 T 25-04-2017 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 Gene3D G3DSA:1.20.1250.20 21 201 5.4E-20 T 25-04-2017 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 Pfam PF00854 POT family 89 445 3.2E-87 T 25-04-2017 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 489 54.018 T 25-04-2017 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0015197|GO:0016020 A4U88_RS10970 e59c455ceca26b08bbbeaffa436ee0c6 504 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 17 485 1.1E-137 T 25-04-2017 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 A4U88_RS10060 24e334325db4e34c307fd8768c6ace80 498 Gene3D G3DSA:3.40.605.10 19 280 3.1E-97 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS10060 24e334325db4e34c307fd8768c6ace80 498 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS10060 24e334325db4e34c307fd8768c6ace80 498 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS10060 24e334325db4e34c307fd8768c6ace80 498 Gene3D G3DSA:3.40.309.10 281 468 1.0E-65 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS10060 24e334325db4e34c307fd8768c6ace80 498 SUPERFAMILY SSF53720 5 496 2.23E-166 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS10060 24e334325db4e34c307fd8768c6ace80 498 Pfam PF00171 Aldehyde dehydrogenase family 33 492 3.7E-170 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS06175 d545662429cca3b77d52313b9c859991 720 Gene3D G3DSA:2.170.130.10 61 181 8.1E-25 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS06175 d545662429cca3b77d52313b9c859991 720 Pfam PF00593 TonB dependent receptor 482 700 1.0E-24 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS06175 d545662429cca3b77d52313b9c859991 720 SUPERFAMILY SSF56935 60 720 2.24E-107 T 25-04-2017 A4U88_RS06175 d545662429cca3b77d52313b9c859991 720 Gene3D G3DSA:2.40.170.20 190 720 2.9E-99 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS06175 d545662429cca3b77d52313b9c859991 720 Pfam PF07715 TonB-dependent Receptor Plug Domain 77 173 4.7E-14 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 PRINTS PR01035 Tetracycline resistance protein signature 17 33 4.0E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 PRINTS PR01035 Tetracycline resistance protein signature 79 103 4.0E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 PRINTS PR01035 Tetracycline resistance protein signature 136 158 4.0E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 PRINTS PR01035 Tetracycline resistance protein signature 340 363 4.0E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 PRINTS PR01035 Tetracycline resistance protein signature 106 127 4.0E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 SUPERFAMILY SSF103473 6 214 3.27E-42 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 Pfam PF07690 Major Facilitator Superfamily 11 191 9.1E-31 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 Pfam PF07690 Major Facilitator Superfamily 216 384 1.1E-22 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 SUPERFAMILY SSF103473 213 387 1.57E-29 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 Gene3D G3DSA:1.20.1250.20 7 189 8.2E-39 T 25-04-2017 A4U88_RS11515 78e7a85bec622cb33bf41f0e02ec1cb1 399 Gene3D G3DSA:1.20.1250.20 213 384 7.8E-27 T 25-04-2017 A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 Gene3D G3DSA:3.60.15.10 4 251 1.6E-83 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 Pfam PF00753 Metallo-beta-lactamase superfamily 13 165 5.6E-17 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 45.281 T 25-04-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 6.5E-24 T 25-04-2017 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 7.5E-102 T 25-04-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 PIRSF PIRSF005457 1 251 1.2E-88 T 25-04-2017 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 SUPERFAMILY SSF56281 1 251 5.9E-68 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS03970 84f1d6b1da85923eccf5019bb1c1b92f 251 SMART SM00849 11 165 4.6E-36 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS02255 0f8bd1bcae71ec444e68390cc62d5c9b 254 Gene3D G3DSA:1.20.1260.10 4 57 1.9E-88 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS02255 0f8bd1bcae71ec444e68390cc62d5c9b 254 Gene3D G3DSA:1.20.1260.10 105 252 1.9E-88 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS02255 0f8bd1bcae71ec444e68390cc62d5c9b 254 PIRSF PIRSF020736 1 253 2.7E-91 T 25-04-2017 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 A4U88_RS02255 0f8bd1bcae71ec444e68390cc62d5c9b 254 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 6 248 2.0E-107 T 25-04-2017 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 A4U88_RS02255 0f8bd1bcae71ec444e68390cc62d5c9b 254 SUPERFAMILY SSF47240 105 251 3.87E-74 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS02255 0f8bd1bcae71ec444e68390cc62d5c9b 254 SUPERFAMILY SSF47240 7 57 3.87E-74 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SUPERFAMILY SSF48452 39 132 7.11E-6 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SMART SM00028 107 140 390.0 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SMART SM00028 69 102 64.0 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SMART SM00028 141 174 360.0 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SMART SM00028 214 247 0.095 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SMART SM00028 180 213 270.0 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 Pfam PF13432 Tetratricopeptide repeat 113 169 0.0095 T 25-04-2017 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 Pfam PF14559 Tetratricopeptide repeat 191 246 1.2E-7 T 25-04-2017 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 Pfam PF13176 Tetratricopeptide repeat 71 98 0.03 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 SUPERFAMILY SSF48452 109 262 5.31E-14 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 388 36.48 T 25-04-2017 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 A4U88_RS12870 0ace300c7c80b5c9e1315a5ac910db80 390 Gene3D G3DSA:1.25.40.10 39 247 6.1E-22 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS23305 502a8d7d918ef6bd8fd88341dd63417b 310 SUPERFAMILY SSF53613 5 304 3.44E-72 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS23305 502a8d7d918ef6bd8fd88341dd63417b 310 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 259 272 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS23305 502a8d7d918ef6bd8fd88341dd63417b 310 Pfam PF00294 pfkB family carbohydrate kinase 5 304 1.9E-65 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS23305 502a8d7d918ef6bd8fd88341dd63417b 310 Gene3D G3DSA:3.40.1190.20 5 302 1.3E-73 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS18150 234deae076463aa4c079c8729c295b91 429 PIRSF PIRSF002808 1 425 8.8E-46 T 25-04-2017 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 A4U88_RS18150 234deae076463aa4c079c8729c295b91 429 SUPERFAMILY SSF103473 3 419 5.1E-85 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS18150 234deae076463aa4c079c8729c295b91 429 Pfam PF07690 Major Facilitator Superfamily 301 421 1.2E-9 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18150 234deae076463aa4c079c8729c295b91 429 Pfam PF07690 Major Facilitator Superfamily 13 293 1.6E-50 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18150 234deae076463aa4c079c8729c295b91 429 Gene3D G3DSA:1.20.1250.20 5 198 3.9E-49 T 25-04-2017 A4U88_RS18150 234deae076463aa4c079c8729c295b91 429 Gene3D G3DSA:1.20.1250.20 225 418 2.0E-34 T 25-04-2017 A4U88_RS05635 6fb4668619f5161e52d53d98caeca332 220 SUPERFAMILY SSF52374 11 220 1.87E-57 T 25-04-2017 A4U88_RS05635 6fb4668619f5161e52d53d98caeca332 220 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 14 219 7.5E-59 T 25-04-2017 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 A4U88_RS05635 6fb4668619f5161e52d53d98caeca332 220 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 13 75 2.1E-11 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS05635 6fb4668619f5161e52d53d98caeca332 220 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 10 220 31.64 T 25-04-2017 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: R-HSA-196807 A4U88_RS05635 6fb4668619f5161e52d53d98caeca332 220 Gene3D G3DSA:3.40.50.620 13 220 1.6E-65 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05635 6fb4668619f5161e52d53d98caeca332 220 Pfam PF01467 Cytidylyltransferase-like 14 194 1.3E-33 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS19715 5a17bdf7786c9d94c24dae27869e6d1e 405 Gene3D G3DSA:1.20.1250.20 2 182 1.8E-30 T 25-04-2017 A4U88_RS19715 5a17bdf7786c9d94c24dae27869e6d1e 405 Gene3D G3DSA:1.20.1250.20 208 394 2.4E-25 T 25-04-2017 A4U88_RS19715 5a17bdf7786c9d94c24dae27869e6d1e 405 Pfam PF07690 Major Facilitator Superfamily 5 351 1.1E-42 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19715 5a17bdf7786c9d94c24dae27869e6d1e 405 SUPERFAMILY SSF103473 2 386 1.7E-67 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 Pfam PF01494 FAD binding domain 8 348 7.7E-22 T 25-04-2017 IPR002938 FAD-binding domain GO:0071949 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 SUPERFAMILY SSF54373 178 278 1.96E-7 T 25-04-2017 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 2.3E-20 T 25-04-2017 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 2.3E-20 T 25-04-2017 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 2.3E-20 T 25-04-2017 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 337 353 2.3E-20 T 25-04-2017 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.3E-20 T 25-04-2017 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 SUPERFAMILY SSF51905 274 376 9.36E-59 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 SUPERFAMILY SSF51905 6 173 9.36E-59 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 Gene3D G3DSA:3.50.50.60 274 355 9.4E-42 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS11330 4f5157cc25e11d009ade4fc9fd8820ef 383 Gene3D G3DSA:3.50.50.60 6 179 9.4E-42 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS06760 1260a572013761e1e442150f38a82897 147 Pfam PF13673 Acetyltransferase (GNAT) domain 23 127 1.1E-15 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS06760 1260a572013761e1e442150f38a82897 147 Gene3D G3DSA:3.40.630.30 1 144 7.3E-28 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06760 1260a572013761e1e442150f38a82897 147 SUPERFAMILY SSF55729 1 144 2.96E-28 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06230 210b51dd5eeee883c255595bf3ff586d 331 Pfam PF10282 Lactonase, 7-bladed beta-propeller 5 327 7.1E-93 T 25-04-2017 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 A4U88_RS06230 210b51dd5eeee883c255595bf3ff586d 331 Gene3D G3DSA:2.130.10.10 2 328 2.2E-83 T 25-04-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 A4U88_RS06230 210b51dd5eeee883c255595bf3ff586d 331 SUPERFAMILY SSF50974 28 328 1.26E-51 T 25-04-2017 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 A4U88_RS06230 210b51dd5eeee883c255595bf3ff586d 331 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 55.675 T 25-04-2017 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 A4U88_RS10285 84977919302e90711914b53cc9a940a6 165 Gene3D G3DSA:3.30.450.40 2 152 4.1E-49 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS10285 84977919302e90711914b53cc9a940a6 165 SUPERFAMILY SSF55781 2 151 4.66E-40 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS10285 84977919302e90711914b53cc9a940a6 165 Pfam PF13185 GAF domain 37 144 1.3E-9 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS10285 84977919302e90711914b53cc9a940a6 165 SMART SM00065 9 161 1.3E-5 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS00630 77eebdf5859927f1b00beb2f3e0b3a9a 398 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 386 9.0E-127 T 25-04-2017 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 A4U88_RS00630 77eebdf5859927f1b00beb2f3e0b3a9a 398 SUPERFAMILY SSF48452 269 388 7.59E-10 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00630 77eebdf5859927f1b00beb2f3e0b3a9a 398 SUPERFAMILY SSF48452 98 226 7.59E-10 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00630 77eebdf5859927f1b00beb2f3e0b3a9a 398 Gene3D G3DSA:1.25.40.10 81 203 1.4E-14 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00630 77eebdf5859927f1b00beb2f3e0b3a9a 398 Gene3D G3DSA:1.25.40.10 265 387 1.4E-14 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00630 77eebdf5859927f1b00beb2f3e0b3a9a 398 Pfam PF07219 HemY protein N-terminus 26 132 2.9E-35 T 25-04-2017 IPR010817 HemY, N-terminal A4U88_RS07860 820fbd12a5856db57216f1421254c5a0 304 Pfam PF03466 LysR substrate binding domain 96 293 5.0E-24 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07860 820fbd12a5856db57216f1421254c5a0 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.3E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07860 820fbd12a5856db57216f1421254c5a0 304 Gene3D G3DSA:3.40.190.10 95 202 8.0E-15 T 25-04-2017 A4U88_RS07860 820fbd12a5856db57216f1421254c5a0 304 SUPERFAMILY SSF53850 110 295 6.67E-25 T 25-04-2017 A4U88_RS07860 820fbd12a5856db57216f1421254c5a0 304 SUPERFAMILY SSF46785 8 93 3.8E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07860 820fbd12a5856db57216f1421254c5a0 304 Gene3D G3DSA:1.10.10.10 8 86 1.0E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 SUPERFAMILY SSF53474 30 332 1.09E-59 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 Gene3D G3DSA:3.40.50.1820 31 333 1.9E-78 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00111 Alpha/beta hydrolase fold signature 94 109 5.2E-10 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00111 Alpha/beta hydrolase fold signature 139 152 5.2E-10 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00111 Alpha/beta hydrolase fold signature 153 166 5.2E-10 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 Pfam PF00561 alpha/beta hydrolase fold 71 179 5.1E-19 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00412 Epoxide hydrolase signature 139 152 3.5E-8 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00412 Epoxide hydrolase signature 309 331 3.5E-8 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00412 Epoxide hydrolase signature 74 92 3.5E-8 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00412 Epoxide hydrolase signature 153 166 3.5E-8 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS11440 331ac9143b4ae8abd330c4c374fbaee7 334 PRINTS PR00412 Epoxide hydrolase signature 94 109 3.5E-8 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS23755 bf4c4d3674052fc51b99eafe69a9bbad 375 Gene3D G3DSA:3.40.50.2000 164 338 5.4E-28 T 25-04-2017 A4U88_RS23755 bf4c4d3674052fc51b99eafe69a9bbad 375 SUPERFAMILY SSF53756 5 373 6.28E-74 T 25-04-2017 A4U88_RS23755 bf4c4d3674052fc51b99eafe69a9bbad 375 Pfam PF13439 Glycosyltransferase Family 4 17 182 1.6E-20 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS23755 bf4c4d3674052fc51b99eafe69a9bbad 375 Pfam PF00534 Glycosyl transferases group 1 194 351 5.1E-28 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 SUPERFAMILY SSF53850 90 293 7.96E-42 T 25-04-2017 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 Gene3D G3DSA:3.40.190.10 92 185 1.5E-18 T 25-04-2017 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.9E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 SUPERFAMILY SSF46785 7 87 3.1E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 Gene3D G3DSA:1.10.10.10 4 86 4.3E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.6E-10 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.6E-10 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.6E-10 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 Gene3D G3DSA:3.40.190.10 186 256 6.5E-4 T 25-04-2017 A4U88_RS11115 71bc18d4d674df6c45d61cd518d89867 297 Pfam PF03466 LysR substrate binding domain 88 292 4.0E-39 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07820 010bbb7950c181d072247cf3eca6f66a 258 Gene3D G3DSA:3.20.20.70 4 257 2.7E-87 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS07820 010bbb7950c181d072247cf3eca6f66a 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 44.848 T 25-04-2017 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 A4U88_RS07820 010bbb7950c181d072247cf3eca6f66a 258 Pfam PF00977 Histidine biosynthesis protein 5 239 9.3E-78 T 25-04-2017 IPR006062 Histidine biosynthesis GO:0000105 A4U88_RS07820 010bbb7950c181d072247cf3eca6f66a 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 1.1E-116 T 25-04-2017 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 A4U88_RS07820 010bbb7950c181d072247cf3eca6f66a 258 SUPERFAMILY SSF51366 1 257 1.18E-73 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 95 6.0E-6 T 25-04-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 SUPERFAMILY SSF63380 3 97 3.94E-22 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 SUPERFAMILY SSF52343 100 231 1.31E-34 T 25-04-2017 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 3.6E-21 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 Gene3D G3DSA:2.40.30.10 4 98 1.3E-29 T 25-04-2017 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 Gene3D G3DSA:3.40.50.80 101 231 5.9E-37 T 25-04-2017 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 2.4E-13 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 2.4E-13 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 2.4E-13 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 2.4E-13 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS01030 0e89c91311955c5e1c16265cfd8cc072 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 2.4E-13 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 Gene3D G3DSA:3.40.190.10 92 193 2.3E-5 T 25-04-2017 A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 63 6.1E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 Pfam PF03466 LysR substrate binding domain 93 281 6.2E-12 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 SUPERFAMILY SSF46785 2 82 4.9E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 Gene3D G3DSA:1.10.10.10 1 83 2.4E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 Gene3D G3DSA:3.40.190.10 194 263 1.0E-12 T 25-04-2017 A4U88_RS16625 474a33ad1effd7dfdbc0254a89c2aa1e 300 SUPERFAMILY SSF53850 90 280 2.9E-21 T 25-04-2017 A4U88_RS21355 9438a28ea68892e1fd25e776fe04c014 209 Pfam PF05494 MlaC protein 30 196 6.1E-54 T 25-04-2017 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC A4U88_RS21355 9438a28ea68892e1fd25e776fe04c014 209 Gene3D G3DSA:1.10.10.640 69 109 4.3E-23 T 25-04-2017 IPR023094 Toluene tolerance protein, alpha-helical A4U88_RS21355 9438a28ea68892e1fd25e776fe04c014 209 Gene3D G3DSA:1.10.10.640 171 201 4.3E-23 T 25-04-2017 IPR023094 Toluene tolerance protein, alpha-helical A4U88_RS21355 9438a28ea68892e1fd25e776fe04c014 209 PIRSF PIRSF004649 1 209 7.4E-62 T 25-04-2017 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC A4U88_RS21355 9438a28ea68892e1fd25e776fe04c014 209 Gene3D G3DSA:3.10.450.50 24 68 8.6E-18 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS21355 9438a28ea68892e1fd25e776fe04c014 209 Gene3D G3DSA:3.10.450.50 112 170 8.6E-18 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 PRINTS PR00123 ATP synthase A subunit signature 92 108 4.2E-15 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 PRINTS PR00123 ATP synthase A subunit signature 191 213 4.2E-15 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 PRINTS PR00123 ATP synthase A subunit signature 239 254 4.2E-15 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 Pfam PF00119 ATP synthase A chain 34 253 5.9E-57 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 Hamap MF_01393 ATP synthase subunit a [atpB]. 13 259 16.229 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 ProSitePatterns PS00449 ATP synthase a subunit signature. 194 203 - T 25-04-2017 IPR023011 ATPase, F0 complex, subunit A, active site Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 Gene3D G3DSA:1.20.120.220 84 259 2.3E-59 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 SUPERFAMILY SSF81336 83 253 1.44E-49 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS24100 8a343fb075995032ae60f6bc72bafde3 259 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 18 254 4.1E-43 T 25-04-2017 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 SUPERFAMILY SSF55604 10 81 9.55E-20 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 Gene3D G3DSA:3.30.1360.60 6 83 1.6E-23 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 1.2E-18 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 Pfam PF02378 Phosphotransferase system, EIIC 112 404 4.9E-33 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 460 7.0E-213 T 25-04-2017 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 A4U88_RS02185 55063ffd53451cfd83bd82cf3f80f878 471 Pfam PF00367 phosphotransferase system, EIIB 12 42 1.5E-12 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS09790 7ebcb05f43c41fb6f0e442e61c67ca68 236 SUPERFAMILY SSF53697 98 235 2.22E-18 T 25-04-2017 A4U88_RS09790 7ebcb05f43c41fb6f0e442e61c67ca68 236 SUPERFAMILY SSF46689 10 72 3.23E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09790 7ebcb05f43c41fb6f0e442e61c67ca68 236 Gene3D G3DSA:3.40.50.10490 60 206 1.9E-17 T 25-04-2017 A4U88_RS09790 7ebcb05f43c41fb6f0e442e61c67ca68 236 Gene3D G3DSA:1.10.10.10 10 59 5.5E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09790 7ebcb05f43c41fb6f0e442e61c67ca68 236 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 64 4.4E-12 T 25-04-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 A4U88_RS09790 7ebcb05f43c41fb6f0e442e61c67ca68 236 Pfam PF01380 SIS domain 98 197 1.6E-7 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 Pfam PF04399 Glutaredoxin 2, C terminal domain 86 213 8.9E-49 T 25-04-2017 IPR007494 Glutaredoxin 2, C-terminal A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 Gene3D G3DSA:3.40.30.10 8 84 4.3E-28 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 ProSitePatterns PS00195 Glutaredoxin active site. 3 18 - T 25-04-2017 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 SUPERFAMILY SSF47616 76 212 1.36E-43 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 Gene3D G3DSA:1.20.1050.10 91 213 1.7E-45 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 74 2.0E-11 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 SUPERFAMILY SSF52833 1 87 1.29E-17 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS13710 ffe3aa000ad12b3210757afea5cc982f 215 TIGRFAM TIGR02182 GRXB: glutaredoxin, GrxB family 2 210 1.7E-88 T 25-04-2017 IPR011901 Glutaredoxin, GrxB GO:0009055|GO:0015035 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 SMART SM00155 401 428 5.6E-7 T 25-04-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 SMART SM00155 165 192 1.7E-5 T 25-04-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 Pfam PF13091 PLD-like domain 82 224 2.5E-19 T 25-04-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 Pfam PF13091 PLD-like domain 314 453 5.6E-19 T 25-04-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 SUPERFAMILY SSF56024 281 465 3.36E-28 T 25-04-2017 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 SUPERFAMILY SSF56024 34 228 7.85E-42 T 25-04-2017 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 Gene3D G3DSA:3.30.870.10 278 459 1.6E-35 T 25-04-2017 A4U88_RS11890 795f749b91f282b94252a25e4b04dfd4 511 Gene3D G3DSA:3.30.870.10 60 228 4.1E-37 T 25-04-2017 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 SUPERFAMILY SSF52540 4 164 5.51E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Hamap MF_00195 GTPase Der [der]. 2 467 39.147 T 25-04-2017 IPR016484 GTP-binding protein EngA GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Pfam PF01926 50S ribosome-binding GTPase 5 119 9.7E-28 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Pfam PF01926 50S ribosome-binding GTPase 211 328 5.5E-24 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 SUPERFAMILY SSF52540 208 470 3.09E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 PIRSF PIRSF006485 1 472 3.0E-180 T 25-04-2017 IPR016484 GTP-binding protein EngA GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 3.3E-9 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.3E-9 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 464 1.2E-178 T 25-04-2017 IPR016484 GTP-binding protein EngA GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Gene3D G3DSA:3.40.50.300 2 160 1.3E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Gene3D G3DSA:3.40.50.300 207 389 3.1E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 158 3.5E-20 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 208 372 6.3E-21 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 384 464 8.4E-26 T 25-04-2017 IPR032859 GTPase Der, C-terminal KH-domain-like A4U88_RS18365 19b406b8055f4cfcccfd4890bc1ea8ca 496 Gene3D G3DSA:3.30.300.20 390 465 1.8E-23 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS18520 854858e71927876a4465382ba3ab0a57 314 Gene3D G3DSA:1.10.3720.10 33 308 4.8E-42 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18520 854858e71927876a4465382ba3ab0a57 314 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 308 2.9E-16 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18520 854858e71927876a4465382ba3ab0a57 314 SUPERFAMILY SSF161098 31 308 7.06E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13695 9eca08902ec4e21e8dbe6320608b4552 194 SUPERFAMILY SSF55729 12 185 1.32E-40 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS13695 9eca08902ec4e21e8dbe6320608b4552 194 Gene3D G3DSA:3.40.630.30 8 186 4.0E-43 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS13695 9eca08902ec4e21e8dbe6320608b4552 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 1.2E-17 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 259 325 6.5E-13 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 PRINTS PR00406 Cytochrome B5 reductase signature 115 134 2.8E-5 T 25-04-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 PRINTS PR00406 Cytochrome B5 reductase signature 205 213 2.8E-5 T 25-04-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 PRINTS PR00406 Cytochrome B5 reductase signature 55 62 2.8E-5 T 25-04-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 SUPERFAMILY SSF54292 227 332 1.3E-24 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 Gene3D G3DSA:3.10.20.30 234 332 7.4E-28 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 284 292 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 Pfam PF00175 Oxidoreductase NAD-binding domain 116 219 1.1E-11 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 Gene3D G3DSA:3.40.50.80 106 233 1.6E-31 T 25-04-2017 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 Pfam PF00970 Oxidoreductase FAD-binding domain 37 104 1.8E-7 T 25-04-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 Gene3D G3DSA:2.40.30.10 11 105 2.4E-17 T 25-04-2017 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 SUPERFAMILY SSF63380 11 104 2.11E-19 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS08165 25331cb23e37f3f4c762ee0f17ac65ef 333 SUPERFAMILY SSF52343 104 238 6.94E-32 T 25-04-2017 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 Pfam PF00406 Adenylate kinase 5 186 5.0E-61 T 25-04-2017 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 81 97 7.4E-36 T 25-04-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 4 17 7.4E-36 T 25-04-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 173 187 7.4E-36 T 25-04-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 32 46 7.4E-36 T 25-04-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 PRINTS PR00094 Adenylate kinase signature 156 171 7.4E-36 T 25-04-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 4.1E-15 T 25-04-2017 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 53.204 T 25-04-2017 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 SUPERFAMILY SSF52540 1 188 7.38E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 Gene3D G3DSA:3.40.50.300 1 212 2.9E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 25-04-2017 A4U88_RS05195 fad4659046718e4300e9e59a2fc2924c 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 4.4E-76 T 25-04-2017 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 SUPERFAMILY SSF51011 597 678 2.3E-18 T 25-04-2017 A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 SUPERFAMILY SSF51445 247 594 8.15E-69 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 Pfam PF13802 Galactose mutarotase-like 146 213 1.2E-22 T 25-04-2017 IPR025887 Glycoside hydrolase family 31, N-terminal domain A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 Gene3D G3DSA:3.20.20.70 327 503 3.8E-4 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 Pfam PF17137 Domain of unknown function (DUF5110) 700 767 2.7E-6 T 25-04-2017 IPR033403 Domain of unknown function DUF5110 A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 Pfam PF01055 Glycosyl hydrolases family 31 238 682 1.1E-116 T 25-04-2017 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 A4U88_RS18330 375de44df45a6eb2c3f08559d8bec1fb 788 SUPERFAMILY SSF74650 2 243 1.63E-44 T 25-04-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 A4U88_RS18735 b19875be49238206e7eb8283ca3a5219 165 Gene3D G3DSA:3.30.530.20 22 163 2.1E-49 T 25-04-2017 IPR023393 START-like domain A4U88_RS18735 b19875be49238206e7eb8283ca3a5219 165 SUPERFAMILY SSF55961 22 163 4.89E-35 T 25-04-2017 A4U88_RS18735 b19875be49238206e7eb8283ca3a5219 165 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 31 156 4.2E-32 T 25-04-2017 IPR005031 Coenzyme Q-binding protein COQ10, START domain A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 SUPERFAMILY SSF53613 4 303 2.18E-76 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 299 1.9E-90 T 25-04-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 Gene3D G3DSA:3.40.1190.20 2 303 4.2E-85 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 PRINTS PR00990 Ribokinase signature 219 230 1.4E-28 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 PRINTS PR00990 Ribokinase signature 7 28 1.4E-28 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 PRINTS PR00990 Ribokinase signature 175 190 1.4E-28 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 PRINTS PR00990 Ribokinase signature 107 120 1.4E-28 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 PRINTS PR00990 Ribokinase signature 34 53 1.4E-28 T 25-04-2017 IPR002139 Ribokinase/fructokinase GO:0004747|GO:0006014 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 Pfam PF00294 pfkB family carbohydrate kinase 4 295 2.7E-64 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS19910 14127f26bf8cdac963633d007f1d95c3 308 Hamap MF_01987 Ribokinase [rbsK]. 3 303 23.28 T 25-04-2017 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 SUPERFAMILY SSF111369 268 329 4.05E-5 T 25-04-2017 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 22 443 1.5E-123 T 25-04-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 3.3E-67 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 34 401 6.9E-20 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 Gene3D G3DSA:2.40.50.100 65 96 2.5E-17 T 25-04-2017 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 Gene3D G3DSA:2.40.50.100 292 327 2.5E-17 T 25-04-2017 A4U88_RS04660 e5567262296b9f395ffb6a21dedb650a 443 ProSitePatterns PS00543 HlyD family secretion proteins signature. 407 429 - T 25-04-2017 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 A4U88_RS07650 a008142d9821eab80bcae33208c683f7 450 Pfam PF03606 C4-dicarboxylate anaerobic carrier 3 448 2.1E-125 T 25-04-2017 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 A4U88_RS07650 a008142d9821eab80bcae33208c683f7 450 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 438 1.0E-173 T 25-04-2017 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 A4U88_RS15510 bb59d2ed053d30cee0887da687819b34 168 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 18 132 1.2E-10 T 25-04-2017 IPR017734 Type VI secretion system, lipoprotein SciN A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 Gene3D G3DSA:3.40.50.720 147 256 5.3E-29 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 SUPERFAMILY SSF51735 112 278 4.25E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 Pfam PF00107 Zinc-binding dehydrogenase 152 258 7.8E-30 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 SUPERFAMILY SSF50129 9 142 1.73E-34 T 25-04-2017 IPR011032 GroES-like A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 Gene3D G3DSA:3.90.180.10 3 146 4.3E-41 T 25-04-2017 IPR011032 GroES-like A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 25-04-2017 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 SMART SM00829 11 325 2.4E-22 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS21860 101ca719faee329b31392f75b507f3fe 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 89 3.3E-9 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Gene3D G3DSA:1.10.287.380 886 946 4.3E-7 T 25-04-2017 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Gene3D G3DSA:3.90.740.10 201 367 1.7E-47 T 25-04-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 SUPERFAMILY SSF46589 891 955 7.32E-16 T 25-04-2017 IPR010978 tRNA-binding arm GO:0000166 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Pfam PF08264 Anticodon-binding domain of tRNA 681 832 1.4E-44 T 25-04-2017 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 956 16.165 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 SUPERFAMILY SSF47323 649 906 1.16E-70 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 21 638 1.2E-226 T 25-04-2017 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Gene3D G3DSA:3.40.50.620 616 637 2.3E-140 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Gene3D G3DSA:3.40.50.620 11 200 2.3E-140 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Gene3D G3DSA:3.40.50.620 371 578 2.3E-140 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Gene3D G3DSA:1.10.730.10 638 823 2.4E-66 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 891 952 7.9E-19 T 25-04-2017 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 TIGRFAM TIGR00422 valS: valine--tRNA ligase 10 937 0.0 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 SUPERFAMILY SSF50677 198 372 7.98E-56 T 25-04-2017 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 PRINTS PR00986 Valyl-tRNA synthetase signature 376 389 1.3E-35 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 PRINTS PR00986 Valyl-tRNA synthetase signature 507 525 1.3E-35 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 PRINTS PR00986 Valyl-tRNA synthetase signature 476 497 1.3E-35 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 1.3E-35 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 PRINTS PR00986 Valyl-tRNA synthetase signature 243 260 1.3E-35 T 25-04-2017 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 SUPERFAMILY SSF52374 616 648 2.35E-135 T 25-04-2017 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 SUPERFAMILY SSF52374 9 199 2.35E-135 T 25-04-2017 A4U88_RS02270 8173bedb1a0b411c92f08a5f89b63a91 958 SUPERFAMILY SSF52374 371 578 2.35E-135 T 25-04-2017 A4U88_RS08525 377ff4882a80d599065e7852e92cb1a9 56 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 56 30.087 T 25-04-2017 IPR007040 Ribosome modulation factor A4U88_RS08525 377ff4882a80d599065e7852e92cb1a9 56 Gene3D G3DSA:1.10.10.620 1 53 4.0E-27 T 25-04-2017 IPR023200 Ribosome modulation factor-like domain A4U88_RS08525 377ff4882a80d599065e7852e92cb1a9 56 Pfam PF04957 Ribosome modulation factor 1 53 1.3E-30 T 25-04-2017 IPR007040 Ribosome modulation factor A4U88_RS08525 377ff4882a80d599065e7852e92cb1a9 56 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 56 2.0E-20 T 25-04-2017 IPR007040 Ribosome modulation factor A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 SUPERFAMILY SSF47413 7 69 4.83E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 Gene3D G3DSA:2.60.120.10 94 186 8.5E-35 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 Pfam PF07883 Cupin domain 112 180 2.6E-13 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 Gene3D G3DSA:1.10.260.40 3 75 1.1E-22 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 SUPERFAMILY SSF51182 51 185 6.33E-28 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 Pfam PF01381 Helix-turn-helix 12 63 7.0E-15 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS10955 e73fc5d50632439d1f971ddd964c9edf 187 SMART SM00530 11 66 1.4E-13 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 SUPERFAMILY SSF53850 90 297 2.02E-45 T 25-04-2017 A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.7E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 Gene3D G3DSA:1.10.10.10 5 80 4.4E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 Gene3D G3DSA:3.40.190.10 174 264 1.6E-19 T 25-04-2017 A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 SUPERFAMILY SSF46785 7 88 2.95E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 Pfam PF03466 LysR substrate binding domain 89 296 6.1E-44 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS06665 0d58d77cd0736c82bce1afa68419e760 305 Gene3D G3DSA:3.40.190.10 81 173 1.8E-9 T 25-04-2017 A4U88_RS20435 80cf5bb3a6c810f222f00e5e433f3d14 178 Gene3D G3DSA:3.40.50.2020 2 173 9.9E-80 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS20435 80cf5bb3a6c810f222f00e5e433f3d14 178 Pfam PF00156 Phosphoribosyl transferase domain 12 160 3.3E-26 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS20435 80cf5bb3a6c810f222f00e5e433f3d14 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 5.8E-74 T 25-04-2017 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 A4U88_RS20435 80cf5bb3a6c810f222f00e5e433f3d14 178 SUPERFAMILY SSF53271 3 174 1.28E-55 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 400 45.789 T 25-04-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 15 399 9.5E-157 T 25-04-2017 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 Gene3D G3DSA:3.40.640.10 60 302 2.3E-91 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 SUPERFAMILY SSF53383 15 399 2.86E-128 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 Gene3D G3DSA:3.90.1150.10 306 401 4.5E-35 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 Gene3D G3DSA:3.90.1150.10 11 59 4.5E-35 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 403 1.8E-225 T 25-04-2017 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 A4U88_RS13950 77f18c1ac9dfb6e274ea8ac07db7eee3 404 Pfam PF00202 Aminotransferase class-III 23 398 1.3E-125 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 SUPERFAMILY SSF56024 56 227 1.57E-31 T 25-04-2017 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 Gene3D G3DSA:3.30.870.10 58 201 8.0E-29 T 25-04-2017 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 Gene3D G3DSA:3.30.870.10 245 400 1.6E-25 T 25-04-2017 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 Pfam PF13091 PLD-like domain 65 198 1.8E-21 T 25-04-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 Pfam PF13091 PLD-like domain 249 393 1.5E-15 T 25-04-2017 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 SMART SM00155 338 365 4.7E-5 T 25-04-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 SMART SM00155 143 170 1.3E-5 T 25-04-2017 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 A4U88_RS02565 f6c5573db031fb2a67f6b9d6ef463ca7 416 SUPERFAMILY SSF56024 190 408 1.39E-31 T 25-04-2017 A4U88_RS05955 2d87ebcab9b4fec3b3a017298c8f9bc4 115 SUPERFAMILY SSF81343 3 114 1.09E-29 T 25-04-2017 A4U88_RS05955 2d87ebcab9b4fec3b3a017298c8f9bc4 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 3.1E-36 T 25-04-2017 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 A4U88_RS05955 2d87ebcab9b4fec3b3a017298c8f9bc4 115 Gene3D G3DSA:1.20.1300.10 1 114 4.9E-41 T 25-04-2017 A4U88_RS05955 2d87ebcab9b4fec3b3a017298c8f9bc4 115 PIRSF PIRSF000169 1 115 3.7E-42 T 25-04-2017 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 SUPERFAMILY SSF69255 363 451 2.62E-33 T 25-04-2017 A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 Gene3D G3DSA:3.55.50.10 98 189 3.6E-33 T 25-04-2017 A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 SUPERFAMILY SSF69279 8 183 2.59E-51 T 25-04-2017 A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 SUPERFAMILY SSF69279 187 361 1.63E-46 T 25-04-2017 A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 Gene3D G3DSA:2.40.50.230 369 451 3.0E-39 T 25-04-2017 IPR006531 Gp5 N-terminal A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 SUPERFAMILY SSF69349 441 615 1.41E-35 T 25-04-2017 A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 20 504 2.1E-144 T 25-04-2017 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 7 522 2.3E-181 T 25-04-2017 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset A4U88_RS14760 9123d2e849f8d5195bb98059ce21ef33 642 Pfam PF05954 Phage late control gene D protein (GPD) 25 330 1.7E-90 T 25-04-2017 A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.7E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.7E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 5.7E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 247 7.3E-58 T 25-04-2017 A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 Gene3D G3DSA:3.40.50.720 3 247 1.9E-77 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 SUPERFAMILY SSF51735 3 247 1.41E-74 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 8.9E-40 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 8.9E-40 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 8.9E-40 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 8.9E-40 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 8.9E-40 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS19960 e326cd15db7021170274f3040ea62584 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 8.9E-40 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS00810 9645c2121977cee87945c6b0780a57e4 208 Pfam PF07947 YhhN-like protein 26 206 4.3E-42 T 25-04-2017 IPR012506 YhhN-like GO:0016021 A4U88_RS06890 d04c92f78d3273fe2d22c06fa80f4420 86 Gene3D G3DSA:3.40.1620.10 4 48 9.7E-12 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS06890 d04c92f78d3273fe2d22c06fa80f4420 86 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 3 65 3.6E-15 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS06890 d04c92f78d3273fe2d22c06fa80f4420 86 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 48 5.8E-13 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS06890 d04c92f78d3273fe2d22c06fa80f4420 86 SUPERFAMILY SSF143120 1 76 4.97E-16 T 25-04-2017 A4U88_RS05310 282773c3f4ad83f9c0934486eff26632 215 Gene3D G3DSA:3.90.470.20 50 106 2.5E-4 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS05310 282773c3f4ad83f9c0934486eff26632 215 SUPERFAMILY SSF56214 96 190 1.19E-13 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS05310 282773c3f4ad83f9c0934486eff26632 215 Gene3D G3DSA:3.90.470.20 125 160 1.1E-4 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS18920 30d1e24d04092bf1306759c7d4c810f9 76 Gene3D G3DSA:3.40.30.10 1 72 4.6E-27 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS18920 30d1e24d04092bf1306759c7d4c810f9 76 SUPERFAMILY SSF52833 1 70 5.99E-19 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS18920 30d1e24d04092bf1306759c7d4c810f9 76 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 8.5E-34 T 25-04-2017 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 A4U88_RS18920 30d1e24d04092bf1306759c7d4c810f9 76 Pfam PF00462 Glutaredoxin 3 61 7.9E-15 T 25-04-2017 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 A4U88_RS20230 3e04bc12bb13a52df2f9493337357b10 489 Gene3D G3DSA:3.40.309.10 263 441 4.2E-65 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS20230 3e04bc12bb13a52df2f9493337357b10 489 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS20230 3e04bc12bb13a52df2f9493337357b10 489 Pfam PF00171 Aldehyde dehydrogenase family 12 476 6.8E-169 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS20230 3e04bc12bb13a52df2f9493337357b10 489 Gene3D G3DSA:3.40.605.10 3 262 1.0E-87 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS20230 3e04bc12bb13a52df2f9493337357b10 489 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 276 287 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS20230 3e04bc12bb13a52df2f9493337357b10 489 SUPERFAMILY SSF53720 3 478 2.49E-159 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 Pfam PF08402 TOBE domain 273 342 3.5E-10 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 SUPERFAMILY SSF50331 240 344 2.67E-15 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 SMART SM00382 31 214 2.8E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 SUPERFAMILY SSF52540 7 245 1.36E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 Gene3D G3DSA:3.40.50.300 3 238 9.1E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06375 ba372f84ed656a8cfba5f0ba3be89430 348 Pfam PF00005 ABC transporter 23 164 1.8E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 PRINTS PR01011 Glutathione peroxidase family signature 124 133 1.4E-17 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.4E-17 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.4E-17 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 PIRSF PIRSF000303 1 161 4.6E-56 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 Pfam PF00255 Glutathione peroxidase 9 112 2.4E-35 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 Gene3D G3DSA:3.40.30.10 6 161 2.4E-58 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 25-04-2017 IPR029760 Glutathione peroxidase conserved site Reactome: R-HSA-3299685 A4U88_RS10620 dcd2a0641ee65ff22050a0ede47a6a53 161 SUPERFAMILY SSF52833 6 161 8.97E-53 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 SUPERFAMILY SSF103190 42 171 6.54E-38 T 25-04-2017 IPR029151 Periplasmic sensor domain-like A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Pfam PF17203 Single cache domain 3 39 172 1.3E-18 T 25-04-2017 IPR033463 Single cache domain 3 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 SUPERFAMILY SSF55785 214 315 7.44E-6 T 25-04-2017 IPR000014 PAS domain A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Gene3D G3DSA:1.10.287.130 315 380 3.3E-23 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Gene3D G3DSA:3.30.450.20 218 314 5.1E-9 T 25-04-2017 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Gene3D G3DSA:3.30.450.20 33 172 5.2E-48 T 25-04-2017 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 509 2.3E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 476 2.3E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 528 2.3E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 490 2.3E-12 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 SUPERFAMILY SSF55874 423 528 2.75E-28 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Gene3D G3DSA:3.30.565.10 400 529 1.6E-27 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 SMART SM00387 423 531 1.6E-21 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 SUPERFAMILY SSF55890 329 396 5.23E-14 T 25-04-2017 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Pfam PF00989 PAS fold 216 316 3.0E-6 T 25-04-2017 IPR013767 PAS fold GO:0006355 A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 428 529 3.0E-16 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09505 bc237d84b2d0865abb29090697407209 537 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 326 379 1.5E-12 T 25-04-2017 A4U88_RS19265 26da7ceeb7215e710b34f0b07ad92528 241 PIRSF PIRSF005650 4 241 5.1E-90 T 25-04-2017 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 A4U88_RS19265 26da7ceeb7215e710b34f0b07ad92528 241 Pfam PF00696 Amino acid kinase family 11 219 2.0E-27 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS19265 26da7ceeb7215e710b34f0b07ad92528 241 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.024 T 25-04-2017 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 A4U88_RS19265 26da7ceeb7215e710b34f0b07ad92528 241 SUPERFAMILY SSF53633 7 240 3.01E-73 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS19265 26da7ceeb7215e710b34f0b07ad92528 241 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 2.1E-103 T 25-04-2017 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 A4U88_RS19265 26da7ceeb7215e710b34f0b07ad92528 241 Gene3D G3DSA:3.40.1160.10 3 240 2.1E-86 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS03425 3473cab54805a5c017d0629dd132341b 250 Gene3D G3DSA:2.60.440.10 177 250 6.4E-34 T 25-04-2017 IPR027462 Z ring-associated protein D, C-terminal domain A4U88_RS03425 3473cab54805a5c017d0629dd132341b 250 SUPERFAMILY SSF160950 7 250 3.14E-90 T 25-04-2017 A4U88_RS03425 3473cab54805a5c017d0629dd132341b 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 7 250 32.754 T 25-04-2017 IPR009777 Cell division protein ZapD A4U88_RS03425 3473cab54805a5c017d0629dd132341b 250 Pfam PF07072 Protein of unknown function (DUF1342) 22 228 1.9E-78 T 25-04-2017 IPR009777 Cell division protein ZapD A4U88_RS03425 3473cab54805a5c017d0629dd132341b 250 Gene3D G3DSA:1.10.3900.10 16 176 1.2E-64 T 25-04-2017 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 30 333 7.2E-145 T 25-04-2017 IPR005948 Thiamine ABC transporter periplasmic binding protein GO:0005215|GO:0006810|GO:0015888|GO:0030288|GO:0030975 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 Pfam PF13343 Bacterial extracellular solute-binding protein 86 301 8.5E-19 T 25-04-2017 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 Gene3D G3DSA:3.40.190.10 271 299 2.9E-17 T 25-04-2017 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 Gene3D G3DSA:3.40.190.10 20 132 2.9E-17 T 25-04-2017 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 SUPERFAMILY SSF53850 33 334 4.27E-63 T 25-04-2017 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 20 339 7.5E-164 T 25-04-2017 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein GO:0005524|GO:0015888|GO:0030288|GO:0048502 A4U88_RS03245 d9782747df09ac47357daf5e36a0191d 339 Gene3D G3DSA:3.40.190.10 134 270 2.3E-25 T 25-04-2017 A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 Gene3D G3DSA:3.40.50.1100 196 401 1.8E-68 T 25-04-2017 A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 Gene3D G3DSA:3.90.1380.10 1 84 4.4E-20 T 25-04-2017 IPR029144 Threonine synthase, N-terminal A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 93 368 1.4E-25 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 SUPERFAMILY SSF53686 1 426 9.82E-133 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 Pfam PF14821 Threonine synthase N terminus 8 80 2.9E-11 T 25-04-2017 IPR029144 Threonine synthase, N-terminal A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 Gene3D G3DSA:3.40.50.1100 106 195 5.1E-12 T 25-04-2017 A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 TIGRFAM TIGR00260 thrC: threonine synthase 52 397 4.6E-126 T 25-04-2017 IPR004450 Threonine synthase-like A4U88_RS03015 b0fa1654f7f40e630e634d7fbcfc259f 429 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 25-04-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 A4U88_RS24155 22fbb79f2fe07a55c344ddd36d091f99 318 SUPERFAMILY SSF161098 29 304 8.97E-34 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24155 22fbb79f2fe07a55c344ddd36d091f99 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 308 5.6E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24155 22fbb79f2fe07a55c344ddd36d091f99 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 311 9.6E-94 T 25-04-2017 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 A4U88_RS24155 22fbb79f2fe07a55c344ddd36d091f99 318 Gene3D G3DSA:1.10.3720.10 26 315 6.2E-38 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS23050 ba4f80a35a6ff7572a090c836cab81e5 305 Pfam PF00892 EamA-like transporter family 167 297 9.7E-11 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS23050 ba4f80a35a6ff7572a090c836cab81e5 305 Pfam PF00892 EamA-like transporter family 25 157 3.9E-13 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS23050 ba4f80a35a6ff7572a090c836cab81e5 305 SUPERFAMILY SSF103481 200 303 3.01E-8 T 25-04-2017 A4U88_RS23050 ba4f80a35a6ff7572a090c836cab81e5 305 SUPERFAMILY SSF103481 59 161 4.71E-7 T 25-04-2017 A4U88_RS10595 ac60785b0be0c59fffe102d9e3b8d5fe 334 SUPERFAMILY SSF81345 5 327 7.19E-88 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10595 ac60785b0be0c59fffe102d9e3b8d5fe 334 Pfam PF01032 FecCD transport family 18 327 2.8E-95 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS10595 ac60785b0be0c59fffe102d9e3b8d5fe 334 Gene3D G3DSA:1.10.3470.10 7 331 2.9E-110 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 2.0E-5 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 Gene3D G3DSA:3.40.50.720 125 290 3.5E-74 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 SUPERFAMILY SSF51735 116 287 3.16E-40 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 SMART SM00829 9 322 0.0034 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 324 2.9E-137 T 25-04-2017 IPR014188 Acrylyl-CoA reductase AcuI A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 Pfam PF00107 Zinc-binding dehydrogenase 158 282 2.2E-16 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 Gene3D G3DSA:3.90.180.10 1 86 2.2E-8 T 25-04-2017 IPR011032 GroES-like A4U88_RS21630 edddba9ebdb982dfb625d0dd5f90fe76 325 SUPERFAMILY SSF50129 1 143 2.43E-44 T 25-04-2017 IPR011032 GroES-like A4U88_RS20295 50aac2cb15a6d492281670bcca68bc12 413 SUPERFAMILY SSF103473 3 401 1.83E-58 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS20295 50aac2cb15a6d492281670bcca68bc12 413 Gene3D G3DSA:1.20.1250.20 3 191 7.4E-27 T 25-04-2017 A4U88_RS20295 50aac2cb15a6d492281670bcca68bc12 413 Pfam PF07690 Major Facilitator Superfamily 13 366 1.2E-43 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS20295 50aac2cb15a6d492281670bcca68bc12 413 Gene3D G3DSA:1.20.1250.20 217 395 7.3E-23 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.238 T 25-04-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 Pfam PF00206 Lyase 6 301 6.7E-96 T 25-04-2017 IPR022761 Fumarate lyase, N-terminal A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 Gene3D G3DSA:1.10.40.30 375 432 2.3E-29 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.1E-69 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.1E-69 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.1E-69 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.1E-69 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.1E-69 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.1E-69 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 25-04-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 6.5E-23 T 25-04-2017 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 5.1E-29 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 5.1E-29 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 5.1E-29 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 5.1E-29 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 Gene3D G3DSA:1.20.200.10 108 374 1.8E-105 T 25-04-2017 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 SUPERFAMILY SSF48557 3 456 2.67E-143 T 25-04-2017 IPR008948 L-Aspartase-like GO:0003824 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 8.7E-212 T 25-04-2017 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS23475 54c4cccb41ce8e295eb857b0ac77be52 457 Gene3D G3DSA:1.10.275.10 1 107 2.2E-37 T 25-04-2017 IPR024083 Fumarase/histidase, N-terminal A4U88_RS17290 d34b8b676b688222b638046d31d468e3 369 Gene3D G3DSA:2.130.10.10 9 368 6.9E-82 T 25-04-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 A4U88_RS17290 d34b8b676b688222b638046d31d468e3 369 SUPERFAMILY SSF51004 32 360 3.53E-43 T 25-04-2017 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain A4U88_RS17290 d34b8b676b688222b638046d31d468e3 369 Pfam PF10282 Lactonase, 7-bladed beta-propeller 12 367 4.2E-82 T 25-04-2017 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 A4U88_RS23715 40b4644b114cdabfb7e85715ec451d70 348 Gene3D G3DSA:3.40.50.2000 165 343 2.0E-54 T 25-04-2017 A4U88_RS23715 40b4644b114cdabfb7e85715ec451d70 348 Gene3D G3DSA:3.40.50.2000 1 143 2.2E-58 T 25-04-2017 A4U88_RS23715 40b4644b114cdabfb7e85715ec451d70 348 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 343 5.5E-165 T 25-04-2017 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 A4U88_RS23715 40b4644b114cdabfb7e85715ec451d70 348 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 324 3.5E-84 T 25-04-2017 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 A4U88_RS23715 40b4644b114cdabfb7e85715ec451d70 348 SUPERFAMILY SSF53756 1 343 1.99E-101 T 25-04-2017 A4U88_RS10255 191ad3d68e49a0d74db2417a3f20d372 184 Pfam PF05229 Spore Coat Protein U domain 32 181 1.7E-31 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS10255 191ad3d68e49a0d74db2417a3f20d372 184 SMART SM00972 121 181 2.6E-18 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 Gene3D G3DSA:3.40.190.10 92 177 1.6E-25 T 25-04-2017 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 4.6E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 SUPERFAMILY SSF46785 5 112 4.7E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 Pfam PF03466 LysR substrate binding domain 87 294 4.0E-42 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.2E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.2E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.2E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 SUPERFAMILY SSF53850 88 298 1.07E-42 T 25-04-2017 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 Gene3D G3DSA:3.40.190.10 178 262 3.1E-23 T 25-04-2017 A4U88_RS07020 64ee6ba45ea46150950890c643bad32a 303 Gene3D G3DSA:1.10.10.10 4 87 1.0E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08565 b11cafb1851afc6ebf7e7953ac1866cd 218 Gene3D G3DSA:1.10.150.20 118 202 4.4E-25 T 25-04-2017 A4U88_RS08565 b11cafb1851afc6ebf7e7953ac1866cd 218 Gene3D G3DSA:3.30.1460.30 5 108 2.6E-35 T 25-04-2017 IPR007076 TfoX, N-terminal A4U88_RS08565 b11cafb1851afc6ebf7e7953ac1866cd 218 SUPERFAMILY SSF159894 11 107 6.54E-29 T 25-04-2017 A4U88_RS08565 b11cafb1851afc6ebf7e7953ac1866cd 218 PIRSF PIRSF028788 1 207 2.5E-55 T 25-04-2017 IPR026256 Transcriptional regulator, TfoX/Sxy-type A4U88_RS08565 b11cafb1851afc6ebf7e7953ac1866cd 218 Pfam PF04993 TfoX N-terminal domain 15 106 4.5E-28 T 25-04-2017 IPR007076 TfoX, N-terminal A4U88_RS08565 b11cafb1851afc6ebf7e7953ac1866cd 218 Pfam PF04994 TfoX C-terminal domain 118 196 1.5E-23 T 25-04-2017 IPR007077 TfoX, C-terminal A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 Gene3D G3DSA:3.90.1720.10 122 231 8.2E-13 T 25-04-2017 IPR000064 Endopeptidase, NLPC/P60 domain A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 SUPERFAMILY SSF54001 112 231 2.65E-13 T 25-04-2017 A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 Gene3D G3DSA:3.40.140.10 1 121 8.2E-26 T 25-04-2017 A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 Pfam PF14464 Prokaryotic homologs of the JAB domain 3 98 5.2E-17 T 25-04-2017 IPR028090 JAB domain, prokaryotic A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 SUPERFAMILY SSF102712 3 103 8.89E-21 T 25-04-2017 A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 Pfam PF00877 NlpC/P60 family 116 229 2.4E-16 T 25-04-2017 IPR000064 Endopeptidase, NLPC/P60 domain A4U88_RS16540 d823415dfb62b326d7352590ba6a3abf 234 SMART SM00232 1 124 4.8E-17 T 25-04-2017 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain GO:0005515 A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 Gene3D G3DSA:3.40.190.10 180 262 2.6E-11 T 25-04-2017 A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.8E-13 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 Gene3D G3DSA:1.10.10.10 1 80 1.0E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 SUPERFAMILY SSF53850 89 295 2.71E-32 T 25-04-2017 A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 SUPERFAMILY SSF46785 3 85 1.47E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 Pfam PF03466 LysR substrate binding domain 88 294 7.8E-31 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS19760 8b13c7a72651cdf9723e9a7d09c4ee3b 296 Gene3D G3DSA:3.40.190.10 92 179 4.0E-11 T 25-04-2017 A4U88_RS10980 9040d9f3bc8678a59dccde13abba517c 232 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 209 8.1E-83 T 25-04-2017 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 A4U88_RS10980 9040d9f3bc8678a59dccde13abba517c 232 Pfam PF02508 Rnf-Nqr subunit, membrane protein 6 199 1.1E-62 T 25-04-2017 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 A4U88_RS10980 9040d9f3bc8678a59dccde13abba517c 232 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 210 27.308 T 25-04-2017 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 A4U88_RS10980 9040d9f3bc8678a59dccde13abba517c 232 PIRSF PIRSF006102 1 219 1.1E-76 T 25-04-2017 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 PRINTS PR00723 Subtilisin serine protease family (S8) signature 54 73 1.7E-13 T 25-04-2017 IPR015500 Peptidase S8, subtilisin-related A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 PRINTS PR00723 Subtilisin serine protease family (S8) signature 335 351 1.7E-13 T 25-04-2017 IPR015500 Peptidase S8, subtilisin-related A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 PRINTS PR00723 Subtilisin serine protease family (S8) signature 116 129 1.7E-13 T 25-04-2017 IPR015500 Peptidase S8, subtilisin-related A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 Pfam PF00082 Subtilase family 54 386 2.1E-45 T 25-04-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 465 496 8.4E-12 T 25-04-2017 IPR013425 Autotransporter-associated beta strand repeat A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 336 346 - T 25-04-2017 IPR023828 Peptidase S8, subtilisin, Ser-active site A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 530 1007 3.5E-93 T 25-04-2017 IPR006315 Outer membrane autotransporter barrel GO:0019867 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 Pfam PF03797 Autotransporter beta-domain 734 992 1.3E-53 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 120 130 - T 25-04-2017 IPR022398 Peptidase S8, subtilisin, His-active site A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 Gene3D G3DSA:2.40.128.130 701 1007 8.1E-69 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 SUPERFAMILY SSF52743 105 189 3.93E-62 T 25-04-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 SUPERFAMILY SSF52743 225 397 3.93E-62 T 25-04-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 SUPERFAMILY SSF52743 36 77 3.93E-62 T 25-04-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 SMART SM00869 734 997 3.2E-52 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 SUPERFAMILY SSF103515 692 1007 1.57E-68 T 25-04-2017 IPR005546 Autotransporter beta-domain A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 Pfam PF12951 Passenger-associated-transport-repeat 466 495 1.5E-10 T 25-04-2017 IPR013425 Autotransporter-associated beta strand repeat A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 Gene3D G3DSA:3.40.50.200 231 396 9.4E-68 T 25-04-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 A4U88_RS23245 8cacf10c90dc413ea47520ec711e01a2 1007 Gene3D G3DSA:3.40.50.200 30 195 9.4E-68 T 25-04-2017 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 SUPERFAMILY SSF53850 90 294 2.35E-44 T 25-04-2017 A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 Pfam PF03466 LysR substrate binding domain 89 293 1.6E-43 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 Gene3D G3DSA:1.10.10.10 4 83 6.5E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 Gene3D G3DSA:3.40.190.10 93 178 6.7E-25 T 25-04-2017 A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 SUPERFAMILY SSF46785 5 88 4.54E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.5E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03950 b6658ba8416bd1acb6bdf1ac9848481a 295 Gene3D G3DSA:3.40.190.10 179 257 7.5E-21 T 25-04-2017 A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 Pfam PF00297 Ribosomal protein L3 66 182 1.4E-12 T 25-04-2017 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 SUPERFAMILY SSF50447 1 208 2.21E-79 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 2.6E-92 T 25-04-2017 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 Gene3D G3DSA:2.40.30.10 3 32 5.4E-7 T 25-04-2017 A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 Gene3D G3DSA:2.40.30.10 158 207 5.4E-7 T 25-04-2017 A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 25-04-2017 IPR019926 Ribosomal protein L3, conserved site A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 40.924 T 25-04-2017 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22345 0011b8363208cfdf6bd3f39248689f62 209 Gene3D G3DSA:4.10.960.10 77 157 4.3E-35 T 25-04-2017 A4U88_RS17710 94c7ba261509489641b7703ea5050a66 265 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 181 258 5.9E-21 T 25-04-2017 IPR006260 TonB, C-terminal GO:0006810 A4U88_RS17710 94c7ba261509489641b7703ea5050a66 265 SUPERFAMILY SSF74653 141 259 1.07E-16 T 25-04-2017 A4U88_RS17710 94c7ba261509489641b7703ea5050a66 265 Gene3D G3DSA:3.30.1150.10 142 260 7.2E-18 T 25-04-2017 A4U88_RS17710 94c7ba261509489641b7703ea5050a66 265 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 180 258 4.5E-18 T 25-04-2017 IPR006260 TonB, C-terminal GO:0006810 A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 188 4.4E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 172 4.4E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 188 200 4.4E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 Gene3D G3DSA:1.10.10.10 127 210 2.4E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 SUPERFAMILY SSF46894 152 211 7.48E-14 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 Pfam PF00196 Bacterial regulatory proteins, luxR family 158 209 1.8E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19610 e5ad8ebc122c96275559e863b45025f8 227 SMART SM00421 155 212 1.4E-7 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82693 137 182 1.2E-22 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82693 274 330 1.2E-22 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82693 39 132 1.74E-27 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82866 299 497 2.22E-48 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Gene3D G3DSA:3.30.70.1430 39 139 2.4E-34 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Gene3D G3DSA:1.10.3850.10 815 1028 9.8E-55 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Gene3D G3DSA:1.10.3850.10 279 498 3.3E-58 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Gene3D G3DSA:3.30.2090.10 181 275 4.3E-28 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82714 182 271 5.62E-23 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82714 723 810 8.11E-24 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82693 566 672 2.09E-27 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 SUPERFAMILY SSF82866 807 1031 5.49E-44 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 4.2E-109 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Gene3D G3DSA:3.30.70.1430 568 672 6.3E-32 T 25-04-2017 A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 Gene3D G3DSA:3.30.2090.10 723 810 3.4E-29 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS17830 51757885a43cfd0015690a3c5b1a7739 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 25-04-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 A4U88_RS02120 fe34818b2c73ca7c30526214436edb80 361 PIRSF PIRSF007313 1 361 6.3E-166 T 25-04-2017 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 A4U88_RS02120 fe34818b2c73ca7c30526214436edb80 361 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 351 1.5E-157 T 25-04-2017 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 Gene3D G3DSA:3.40.50.720 2 249 4.7E-68 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 248 1.9E-52 T 25-04-2017 A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 181 0.0012 T 25-04-2017 A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.6E-33 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 4.6E-33 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 4.6E-33 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.6E-33 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 4.6E-33 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 4.6E-33 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 8.2E-5 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 8.2E-5 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 8.2E-5 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02655 8f7463aacc094d916116c33fc7656a8c 260 SUPERFAMILY SSF51735 2 250 5.29E-68 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 SUPERFAMILY SSF56935 41 730 1.9E-141 T 25-04-2017 A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 90 730 2.6E-160 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 713 730 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 Pfam PF00593 TonB dependent receptor 491 728 6.6E-31 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 Gene3D G3DSA:2.170.130.10 40 199 8.1E-37 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 Pfam PF07715 TonB-dependent Receptor Plug Domain 87 187 6.1E-21 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS20340 248112c581ca04ac409f1bd221bed027 730 Gene3D G3DSA:2.40.170.20 202 730 4.8E-168 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 SUPERFAMILY SSF53187 7 213 7.74E-71 T 25-04-2017 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 SUPERFAMILY SSF53187 325 406 7.74E-71 T 25-04-2017 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 Pfam PF01546 Peptidase family M20/M25/M40 143 402 1.5E-9 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 SUPERFAMILY SSF55031 212 322 6.45E-34 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 PIRSF PIRSF037215 5 411 4.3E-149 T 25-04-2017 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 Gene3D G3DSA:3.40.630.10 7 212 6.4E-94 T 25-04-2017 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 Gene3D G3DSA:3.40.630.10 325 409 6.4E-94 T 25-04-2017 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 Pfam PF07687 Peptidase dimerisation domain 209 309 4.1E-10 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 Gene3D G3DSA:3.30.70.360 213 322 7.5E-38 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 TIGRFAM TIGR01882 peptidase-T: peptidase T 7 404 1.5E-97 T 25-04-2017 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 A4U88_RS17140 c06b4570f873b0c6b05513b46a5f1a4e 415 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 142 179 - T 25-04-2017 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 SUPERFAMILY SSF53850 95 291 3.5E-25 T 25-04-2017 A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 SUPERFAMILY SSF46785 4 114 2.02E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 Gene3D G3DSA:1.10.10.10 5 89 4.1E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 Gene3D G3DSA:3.40.190.10 96 183 1.5E-13 T 25-04-2017 A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 7.9E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 Pfam PF03466 LysR substrate binding domain 91 290 2.5E-24 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02415 d63716e3ee75a1af4be22f397e90627a 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02790 75b15358bd76bdf4ede95af515f410d4 198 SUPERFAMILY SSF46689 3 87 9.23E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02790 75b15358bd76bdf4ede95af515f410d4 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 7.4E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS02790 75b15358bd76bdf4ede95af515f410d4 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 7.4E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS02790 75b15358bd76bdf4ede95af515f410d4 198 Gene3D G3DSA:1.10.357.10 3 194 2.2E-33 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS02790 75b15358bd76bdf4ede95af515f410d4 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 1.3E-14 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 268 670 5.1E-153 T 25-04-2017 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Gene3D G3DSA:3.50.50.60 576 649 8.5E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Gene3D G3DSA:3.50.50.60 401 482 8.5E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Gene3D G3DSA:3.50.50.60 257 353 8.5E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 119 244 3.2E-47 T 25-04-2017 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Pfam PF01266 FAD dependent oxidoreductase 268 640 1.4E-46 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Gene3D G3DSA:3.40.50.150 11 252 6.8E-105 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 SUPERFAMILY SSF53335 150 215 7.88E-5 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 SUPERFAMILY SSF51905 266 544 1.55E-31 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17165 29784828e6111a3c429521e261ceba6d 673 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 7 665 28.879 T 25-04-2017 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 SUPERFAMILY SSF50465 334 435 2.35E-30 T 25-04-2017 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 34 215 3.8E-16 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 Gene3D G3DSA:2.40.30.10 243 358 5.6E-20 T 25-04-2017 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 28 434 4.5E-207 T 25-04-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 Pfam PF00009 Elongation factor Tu GTP binding domain 27 231 3.2E-44 T 25-04-2017 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 Gene3D G3DSA:3.40.50.300 20 236 1.7E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 SUPERFAMILY SSF50447 242 328 4.64E-24 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 19 475 54.278 T 25-04-2017 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 SUPERFAMILY SSF52540 24 253 1.09E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 PRINTS PR00315 GTP-binding elongation factor signature 126 137 8.1E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 PRINTS PR00315 GTP-binding elongation factor signature 163 172 8.1E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 PRINTS PR00315 GTP-binding elongation factor signature 110 120 8.1E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 PRINTS PR00315 GTP-binding elongation factor signature 29 42 8.1E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 PRINTS PR00315 GTP-binding elongation factor signature 90 98 8.1E-14 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS03615 bcfab190fb8baa8b2c9af6b5bdfc3e95 475 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 83 98 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Gene3D G3DSA:3.40.1160.10 115 300 1.9E-47 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Gene3D G3DSA:3.40.1160.10 13 60 1.9E-47 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 SUPERFAMILY SSF53633 13 300 8.51E-58 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 3.6E-21 T 25-04-2017 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Pfam PF00742 Homoserine dehydrogenase 609 804 4.0E-43 T 25-04-2017 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 PIRSF PIRSF000727 13 811 1.6E-287 T 25-04-2017 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Pfam PF00696 Amino acid kinase family 13 285 7.0E-43 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Gene3D G3DSA:3.30.360.10 630 787 3.4E-51 T 25-04-2017 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 25-04-2017 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 25-04-2017 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 SUPERFAMILY SSF51735 458 631 1.01E-31 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 Gene3D G3DSA:3.40.50.720 458 629 3.2E-52 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 SUPERFAMILY SSF55347 609 792 1.11E-45 T 25-04-2017 A4U88_RS23510 43dc0e5240fe3a4d283b92e6622258b1 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 454 5.3E-63 T 25-04-2017 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS09960 5c9c1d5d1dc851b14855270e7bc37f80 139 Gene3D G3DSA:3.40.630.30 2 136 2.4E-37 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09960 5c9c1d5d1dc851b14855270e7bc37f80 139 Pfam PF13673 Acetyltransferase (GNAT) domain 26 122 7.7E-9 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS09960 5c9c1d5d1dc851b14855270e7bc37f80 139 SUPERFAMILY SSF55729 2 123 6.38E-23 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09800 f810d0f4ca163842bd2d4f2f67dda9f2 519 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 456 473 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS09800 f810d0f4ca163842bd2d4f2f67dda9f2 519 Gene3D G3DSA:3.30.1360.60 447 516 6.1E-27 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS09800 f810d0f4ca163842bd2d4f2f67dda9f2 519 SUPERFAMILY SSF55604 446 516 2.35E-21 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS09800 f810d0f4ca163842bd2d4f2f67dda9f2 519 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 411 502 2.1E-22 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS09800 f810d0f4ca163842bd2d4f2f67dda9f2 519 Pfam PF02378 Phosphotransferase system, EIIC 16 350 8.2E-57 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS09800 f810d0f4ca163842bd2d4f2f67dda9f2 519 Pfam PF00367 phosphotransferase system, EIIB 447 478 6.0E-15 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS09650 bffdbe67cb73d055f5051b35249f9387 177 SUPERFAMILY SSF46894 110 173 2.58E-10 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS09650 bffdbe67cb73d055f5051b35249f9387 177 Pfam PF00196 Bacterial regulatory proteins, luxR family 121 173 1.4E-7 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS09650 bffdbe67cb73d055f5051b35249f9387 177 Gene3D G3DSA:1.10.10.10 116 173 4.1E-10 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09650 bffdbe67cb73d055f5051b35249f9387 177 SMART SM00421 117 174 9.2E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS09905 c80082850b082daad069fc144afcced4 366 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 41.067 T 25-04-2017 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 A4U88_RS09905 c80082850b082daad069fc144afcced4 366 Gene3D G3DSA:2.30.30.280 214 281 1.2E-34 T 25-04-2017 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 A4U88_RS09905 c80082850b082daad069fc144afcced4 366 SUPERFAMILY SSF52402 5 296 5.73E-59 T 25-04-2017 A4U88_RS09905 c80082850b082daad069fc144afcced4 366 Pfam PF03054 tRNA methyl transferase 7 361 5.3E-144 T 25-04-2017 A4U88_RS09905 c80082850b082daad069fc144afcced4 366 Gene3D G3DSA:2.40.30.10 283 364 4.2E-34 T 25-04-2017 A4U88_RS09905 c80082850b082daad069fc144afcced4 366 Gene3D G3DSA:3.40.50.620 4 212 7.4E-98 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS09905 c80082850b082daad069fc144afcced4 366 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 2.3E-156 T 25-04-2017 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 Gene3D G3DSA:3.40.190.10 180 260 4.2E-15 T 25-04-2017 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 2.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 2.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 2.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 70 3.1E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 SUPERFAMILY SSF46785 10 118 5.05E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 Gene3D G3DSA:3.40.190.10 99 179 4.0E-21 T 25-04-2017 A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 Gene3D G3DSA:1.10.10.10 7 90 1.3E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 Pfam PF03466 LysR substrate binding domain 96 293 5.5E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS06435 6a52eba9a374ecd08af32fd6b14d2e92 298 SUPERFAMILY SSF53850 99 296 8.51E-32 T 25-04-2017 A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.14 T 25-04-2017 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 2.0E-26 T 25-04-2017 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 8.9E-20 T 25-04-2017 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 PIRSF PIRSF002211 1 59 2.3E-28 T 25-04-2017 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 25-04-2017 IPR018038 Ribosomal protein L30, conserved site A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 SUPERFAMILY SSF55129 3 59 1.57E-21 T 25-04-2017 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain A4U88_RS22255 8387aa33ffca69adfa0c37639a24af76 59 Gene3D G3DSA:3.30.1390.20 2 59 6.2E-30 T 25-04-2017 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain A4U88_RS14865 092cbda8fa20a6c45f7a3add08fee744 309 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 8 289 3.5E-132 T 25-04-2017 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 A4U88_RS14865 092cbda8fa20a6c45f7a3add08fee744 309 Pfam PF00775 Dioxygenase 105 289 2.6E-64 T 25-04-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 A4U88_RS14865 092cbda8fa20a6c45f7a3add08fee744 309 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 135 163 - T 25-04-2017 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 A4U88_RS14865 092cbda8fa20a6c45f7a3add08fee744 309 Pfam PF04444 Catechol dioxygenase N terminus 27 95 2.5E-20 T 25-04-2017 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 A4U88_RS14865 092cbda8fa20a6c45f7a3add08fee744 309 Gene3D G3DSA:2.60.130.10 9 306 2.6E-102 T 25-04-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 A4U88_RS14865 092cbda8fa20a6c45f7a3add08fee744 309 SUPERFAMILY SSF49482 8 291 5.36E-93 T 25-04-2017 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 3.0E-16 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 SMART SM00354 5 75 5.8E-19 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 Pfam PF13377 Periplasmic binding protein-like domain 175 313 1.7E-21 T 25-04-2017 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 25-04-2017 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 Gene3D G3DSA:1.10.260.40 4 58 6.1E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 Gene3D G3DSA:3.40.50.2300 65 173 4.8E-31 T 25-04-2017 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 SUPERFAMILY SSF47413 4 61 3.85E-13 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 Gene3D G3DSA:3.40.50.2300 174 314 1.1E-35 T 25-04-2017 A4U88_RS19795 7f55d1195c79490ae32ac4e5a962833e 329 SUPERFAMILY SSF53822 65 312 1.41E-48 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS04285 ecb61e13758f1fd08f07badefefe3efd 166 Pfam PF00419 Fimbrial protein 33 166 2.1E-20 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS04285 ecb61e13758f1fd08f07badefefe3efd 166 Gene3D G3DSA:2.60.40.1090 31 166 2.7E-7 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS04285 ecb61e13758f1fd08f07badefefe3efd 166 SUPERFAMILY SSF49401 41 166 1.64E-23 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS09435 a8df20c522ed932bd99c5c80dce0ff8f 138 Gene3D G3DSA:2.60.40.1220 40 138 9.7E-31 T 25-04-2017 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like A4U88_RS09435 a8df20c522ed932bd99c5c80dce0ff8f 138 SUPERFAMILY SSF81296 40 138 4.34E-26 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS09435 a8df20c522ed932bd99c5c80dce0ff8f 138 Pfam PF04234 CopC domain 41 137 3.0E-24 T 25-04-2017 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 Pfam PF00700 Bacterial flagellin C-terminal helical region 262 346 2.6E-29 T 25-04-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 3.5E-46 T 25-04-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 Gene3D G3DSA:1.20.1330.10 54 170 6.5E-60 T 25-04-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 Gene3D G3DSA:1.20.1330.10 249 302 6.5E-60 T 25-04-2017 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 PRINTS PR00207 Flagellin signature 76 95 2.4E-29 T 25-04-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 PRINTS PR00207 Flagellin signature 37 54 2.4E-29 T 25-04-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 PRINTS PR00207 Flagellin signature 111 134 2.4E-29 T 25-04-2017 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 A4U88_RS14295 a78eed708ee12ae9faeca36eaa21aff2 347 SUPERFAMILY SSF64518 1 347 9.68E-104 T 25-04-2017 A4U88_RS15660 c15e2abaaa4a00a84e1a4d625c83b5db 246 SMART SM00062 17 236 9.0E-27 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS15660 c15e2abaaa4a00a84e1a4d625c83b5db 246 SUPERFAMILY SSF53850 18 231 1.09E-32 T 25-04-2017 A4U88_RS15660 c15e2abaaa4a00a84e1a4d625c83b5db 246 Gene3D G3DSA:3.40.190.10 7 138 1.8E-17 T 25-04-2017 A4U88_RS15660 c15e2abaaa4a00a84e1a4d625c83b5db 246 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 19 227 6.4E-25 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS11165 b307f9153c5edf6f17f01a9e7dbb1d83 164 Pfam PF11158 Protein of unknown function (DUF2938) 11 157 1.2E-51 T 25-04-2017 IPR021329 Protein of unknown function DUF2938 A4U88_RS07940 e87526e4620c754822f2181a809266aa 173 Pfam PF00419 Fimbrial protein 31 173 2.1E-17 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07940 e87526e4620c754822f2181a809266aa 173 SUPERFAMILY SSF49401 29 173 4.77E-41 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS07940 e87526e4620c754822f2181a809266aa 173 Gene3D G3DSA:2.60.40.1090 28 173 2.3E-48 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 711 801 3.3E-30 T 25-04-2017 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0004871|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 944 27.163 T 25-04-2017 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021|GO:0042710 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SUPERFAMILY SSF52172 829 949 4.55E-39 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Pfam PF00512 His Kinase A (phospho-acceptor) domain 471 535 4.2E-16 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Gene3D G3DSA:3.30.565.10 523 693 1.1E-45 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SUPERFAMILY SSF55874 525 693 2.36E-47 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Pfam PF00072 Response regulator receiver domain 831 939 3.9E-30 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Gene3D G3DSA:3.30.450.20 429 474 1.2E-6 T 25-04-2017 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SMART SM00448 828 939 1.4E-37 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 1.6E-17 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 672 1.6E-17 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 691 1.6E-17 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 647 1.6E-17 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 583 692 3.5E-26 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SMART SM00388 471 536 2.0E-19 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Gene3D G3DSA:3.40.50.2300 828 945 2.4E-39 T 25-04-2017 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SUPERFAMILY SSF52172 703 816 8.45E-35 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SMART SM00387 583 694 5.2E-39 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 Gene3D G3DSA:1.10.287.130 475 522 2.5E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16670 1dadc417a203f2d9bf74383a65dcb98b 953 SUPERFAMILY SSF47384 455 537 1.96E-19 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 55 251 4.4E-93 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 228 240 - T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 Pfam PF00813 FliP family 55 247 2.5E-78 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 180 195 - T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 225 250 1.7E-68 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 72 92 1.7E-68 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 53 72 1.7E-68 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 92 111 1.7E-68 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 180 200 1.7E-68 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 201 222 1.7E-68 T 25-04-2017 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 51 60 1.0E-31 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 241 251 1.0E-31 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 173 185 1.0E-31 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 111 123 1.0E-31 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 123 137 1.0E-31 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS14390 07b5137c557585d8a5e61b43fcb320af 253 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 151 163 1.0E-31 T 25-04-2017 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 A4U88_RS04065 df846846affcf9cc291b40a83fa53dac 386 Pfam PF00155 Aminotransferase class I and II 32 383 1.0E-56 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS04065 df846846affcf9cc291b40a83fa53dac 386 SUPERFAMILY SSF53383 10 385 1.61E-96 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS04065 df846846affcf9cc291b40a83fa53dac 386 Gene3D G3DSA:3.90.1150.10 273 383 6.5E-19 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS04065 df846846affcf9cc291b40a83fa53dac 386 Gene3D G3DSA:3.40.640.10 45 272 8.1E-70 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS19905 07eeb351c2930cd503ceff75f9ed0175 202 Pfam PF13023 HD domain 23 185 1.5E-49 T 25-04-2017 IPR006674 HD domain A4U88_RS19905 07eeb351c2930cd503ceff75f9ed0175 202 SUPERFAMILY SSF109604 13 192 1.13E-43 T 25-04-2017 A4U88_RS19905 07eeb351c2930cd503ceff75f9ed0175 202 Gene3D G3DSA:1.10.3210.10 12 192 5.8E-38 T 25-04-2017 IPR006674 HD domain A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 SMART SM00422 1 70 1.6E-28 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 Gene3D G3DSA:1.10.1660.10 56 106 1.1E-7 T 25-04-2017 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 Gene3D G3DSA:1.10.1660.10 1 55 4.5E-25 T 25-04-2017 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 Pfam PF13411 MerR HTH family regulatory protein 1 68 2.7E-18 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 SUPERFAMILY SSF46955 1 103 2.97E-26 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 4.7E-12 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 4.7E-12 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11830 234116ed9d34188788f56985aff560a4 135 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 4.7E-12 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS13780 952986796049eecc4ef6347d09edc8ad 528 Gene3D G3DSA:3.20.20.450 272 513 2.1E-75 T 25-04-2017 IPR001633 EAL domain A4U88_RS13780 952986796049eecc4ef6347d09edc8ad 528 Pfam PF00563 EAL domain 275 501 5.8E-61 T 25-04-2017 IPR001633 EAL domain A4U88_RS13780 952986796049eecc4ef6347d09edc8ad 528 Pfam PF12792 CSS motif domain associated with EAL 47 232 5.1E-29 T 25-04-2017 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain A4U88_RS13780 952986796049eecc4ef6347d09edc8ad 528 SUPERFAMILY SSF141868 273 514 1.27E-73 T 25-04-2017 IPR001633 EAL domain A4U88_RS13780 952986796049eecc4ef6347d09edc8ad 528 SMART SM00052 265 506 1.1E-93 T 25-04-2017 IPR001633 EAL domain A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 Gene3D G3DSA:3.40.50.720 5 256 9.6E-54 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 SUPERFAMILY SSF51735 7 255 6.37E-51 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.6E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.6E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.6E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 3.6E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 255 1.8E-42 T 25-04-2017 A4U88_RS23125 799ba2eeea59413f8999e2347e2bc8da 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 190 0.0019 T 25-04-2017 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 SUPERFAMILY SSF53613 12 309 2.34E-58 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.262 T 25-04-2017 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 Gene3D G3DSA:3.40.1190.20 13 313 1.2E-67 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 1.7E-17 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 Pfam PF01467 Cytidylyltransferase-like 345 469 7.8E-15 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 SUPERFAMILY SSF52374 340 471 9.01E-21 T 25-04-2017 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 Pfam PF00294 pfkB family carbohydrate kinase 13 305 5.5E-55 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 2.0E-128 T 25-04-2017 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 6.5E-63 T 25-04-2017 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 Gene3D G3DSA:3.40.50.620 340 461 8.9E-35 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS20970 b1d00d399d4a1db1d7d06fd753cbf15a 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS07615 a70c13d6fe570001518a14f010163c45 355 Gene3D G3DSA:3.40.50.2300 159 291 7.5E-18 T 25-04-2017 A4U88_RS07615 a70c13d6fe570001518a14f010163c45 355 Pfam PF13407 Periplasmic binding protein domain 50 298 4.0E-30 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS07615 a70c13d6fe570001518a14f010163c45 355 SUPERFAMILY SSF53822 38 309 9.23E-42 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS07615 a70c13d6fe570001518a14f010163c45 355 Gene3D G3DSA:3.40.50.2300 33 158 1.1E-19 T 25-04-2017 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 83 103 5.2E-41 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 2 17 5.2E-41 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 52 75 5.2E-41 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 PRINTS PR00340 P-II protein signature 23 41 5.2E-41 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 Gene3D G3DSA:3.30.70.120 1 112 3.3E-48 T 25-04-2017 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 PIRSF PIRSF039144 1 112 2.0E-53 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 SUPERFAMILY SSF54913 1 112 1.94E-42 T 25-04-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 SMART SM00938 4 105 1.6E-61 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.3E-41 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 25-04-2017 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 A4U88_RS05020 03fdf46ea830f4b488c080deb2668e22 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 25-04-2017 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 Gene3D G3DSA:3.30.70.360 191 296 3.8E-20 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 25 435 2.1E-102 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 PIRSF PIRSF037227 3 483 3.8E-235 T 25-04-2017 IPR017145 Aminobenzoyl-glutamate utilization protein B A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 SUPERFAMILY SSF53187 302 331 2.41E-60 T 25-04-2017 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 SUPERFAMILY SSF53187 386 450 2.41E-60 T 25-04-2017 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 SUPERFAMILY SSF53187 9 202 2.41E-60 T 25-04-2017 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 SUPERFAMILY SSF55031 192 295 2.62E-18 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 Pfam PF01546 Peptidase family M20/M25/M40 101 257 1.4E-7 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 Pfam PF07687 Peptidase dimerisation domain 190 281 1.7E-4 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 Gene3D G3DSA:3.40.630.10 386 462 2.1E-63 T 25-04-2017 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 Gene3D G3DSA:3.40.630.10 299 331 2.1E-63 T 25-04-2017 A4U88_RS20735 6d9cdd36ac7d4f59a2f027279047427e 483 Gene3D G3DSA:3.40.630.10 2 187 2.1E-63 T 25-04-2017 A4U88_RS20335 a223f3ffc743446c2948a03dadbb4cef 265 SUPERFAMILY SSF52540 13 239 4.15E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20335 a223f3ffc743446c2948a03dadbb4cef 265 SMART SM00382 36 224 3.3E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS20335 a223f3ffc743446c2948a03dadbb4cef 265 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS20335 a223f3ffc743446c2948a03dadbb4cef 265 Gene3D G3DSA:3.40.50.300 13 241 2.0E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20335 a223f3ffc743446c2948a03dadbb4cef 265 Pfam PF00005 ABC transporter 27 176 3.1E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.2E-19 T 25-04-2017 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 2.2E-19 T 25-04-2017 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 2.2E-19 T 25-04-2017 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 2.2E-19 T 25-04-2017 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 SUPERFAMILY SSF51905 4 177 1.01E-60 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 SUPERFAMILY SSF51905 268 385 1.01E-60 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 Gene3D G3DSA:3.50.50.60 3 182 1.8E-49 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 Gene3D G3DSA:3.50.50.60 269 357 1.8E-49 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 Pfam PF01494 FAD binding domain 4 343 8.3E-31 T 25-04-2017 IPR002938 FAD-binding domain GO:0071949 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 25-04-2017 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 A4U88_RS20005 ca74eb94eccf89f5cf6bea841e53a324 400 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 391 1.2E-136 T 25-04-2017 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 A4U88_RS00430 26df91868bc03458ca80c0c461041ca1 535 PIRSF PIRSF002741 22 534 9.6E-117 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS00430 26df91868bc03458ca80c0c461041ca1 535 SUPERFAMILY SSF53850 29 534 1.81E-158 T 25-04-2017 A4U88_RS00430 26df91868bc03458ca80c0c461041ca1 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 25-04-2017 IPR023765 Solute-binding protein family 5, conserved site A4U88_RS00430 26df91868bc03458ca80c0c461041ca1 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 1.5E-105 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS00430 26df91868bc03458ca80c0c461041ca1 535 Gene3D G3DSA:3.10.105.10 288 504 1.1E-68 T 25-04-2017 A4U88_RS00430 26df91868bc03458ca80c0c461041ca1 535 Gene3D G3DSA:3.90.76.10 39 219 1.2E-47 T 25-04-2017 A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 6 231 2.0E-83 T 25-04-2017 IPR017788 DnaA regulatory inactivator Hda GO:0032297 A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 5 233 58.927 T 25-04-2017 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 Gene3D G3DSA:3.40.50.300 2 164 1.9E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 SUPERFAMILY SSF52540 17 211 3.43E-21 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 43 63 1.7E-6 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 131 158 1.7E-6 T 25-04-2017 IPR020591 Chromosomal replication control, initiator DnaA-like A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 Pfam PF00308 Bacterial dnaA protein 16 212 2.3E-16 T 25-04-2017 IPR013317 Chromosomal replication initiator protein DnaA A4U88_RS17965 f2eee04808de5473aea8f85f5f5ba163 233 Gene3D G3DSA:1.10.8.60 167 232 2.4E-29 T 25-04-2017 A4U88_RS04405 f925033dba38889d4fd009bf3c9c71ba 126 SUPERFAMILY SSF46785 6 120 5.22E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04405 f925033dba38889d4fd009bf3c9c71ba 126 Gene3D G3DSA:1.10.10.10 5 120 6.4E-37 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04405 f925033dba38889d4fd009bf3c9c71ba 126 Pfam PF01638 HxlR-like helix-turn-helix 20 108 9.9E-21 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 319 325 - T 25-04-2017 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 SUPERFAMILY SSF57884 5 91 7.72E-32 T 25-04-2017 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 PIRSF PIRSF000409 1 351 1.0E-138 T 25-04-2017 IPR016221 Bifunctional regulatory protein Ada A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Pfam PF12833 Helix-turn-helix domain 105 182 1.4E-16 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 SUPERFAMILY SSF46767 268 348 2.22E-29 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 SMART SM00342 99 181 1.9E-14 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 SUPERFAMILY SSF46689 84 131 8.96E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 269 348 3.8E-34 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 270 349 3.6E-31 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 SUPERFAMILY SSF53155 187 267 1.04E-19 T 25-04-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Gene3D G3DSA:3.40.10.10 5 85 3.7E-34 T 25-04-2017 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Gene3D G3DSA:1.10.10.60 86 138 2.3E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Gene3D G3DSA:3.30.160.70 175 267 3.6E-34 T 25-04-2017 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Pfam PF02805 Metal binding domain of Ada 11 72 4.3E-32 T 25-04-2017 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 A4U88_RS04455 175fde21e0d43820860ffd13cdffcb2d 351 Gene3D G3DSA:1.10.10.10 268 349 4.8E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23020 9ee5e7559773b21d05fbc68595e3c67b 393 SUPERFAMILY SSF49401 234 392 1.04E-15 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS23020 9ee5e7559773b21d05fbc68595e3c67b 393 Pfam PF00419 Fimbrial protein 225 392 8.2E-7 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23020 9ee5e7559773b21d05fbc68595e3c67b 393 Gene3D G3DSA:2.60.40.1090 234 392 9.9E-19 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 144 156 1.0E-25 T 25-04-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 265 284 1.0E-25 T 25-04-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 96 1.0E-25 T 25-04-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 Pfam PF10502 Signal peptidase, peptidase S26 257 303 1.3E-7 T 25-04-2017 IPR019533 Peptidase S26 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 SUPERFAMILY SSF51306 78 324 6.28E-80 T 25-04-2017 IPR015927 Peptidase S24/S26A/S26B/S26C A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 Gene3D G3DSA:2.10.109.10 76 154 5.4E-57 T 25-04-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 Gene3D G3DSA:2.10.109.10 265 311 5.4E-57 T 25-04-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 66 305 3.1E-43 T 25-04-2017 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 Gene3D G3DSA:2.170.230.10 155 264 6.0E-42 T 25-04-2017 IPR019766 Peptidase S26A, all-beta subdomain A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 ProSitePatterns PS00761 Signal peptidases I signature 3. 270 283 - T 25-04-2017 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 Pfam PF00717 Peptidase S24-like 86 165 1.4E-20 T 25-04-2017 IPR019759 Peptidase S24/S26A/S26B A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 ProSitePatterns PS00760 Signal peptidases I lysine active site. 146 158 - T 25-04-2017 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 A4U88_RS18640 c29a1458f2e7bca02244e914e6b11b7e 325 ProSitePatterns PS00501 Signal peptidases I serine active site. 89 96 - T 25-04-2017 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 A4U88_RS23615 58fd50e586cb975f781266154d6330ef 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 25-04-2017 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 A4U88_RS23615 58fd50e586cb975f781266154d6330ef 329 SUPERFAMILY SSF53850 21 326 4.29E-92 T 25-04-2017 A4U88_RS23615 58fd50e586cb975f781266154d6330ef 329 Pfam PF13531 Bacterial extracellular solute-binding protein 42 280 2.2E-46 T 25-04-2017 A4U88_RS23615 58fd50e586cb975f781266154d6330ef 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 13 326 7.1E-178 T 25-04-2017 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 A4U88_RS23615 58fd50e586cb975f781266154d6330ef 329 Gene3D G3DSA:3.40.190.10 170 295 2.5E-33 T 25-04-2017 A4U88_RS23615 58fd50e586cb975f781266154d6330ef 329 Gene3D G3DSA:3.40.190.10 21 164 9.9E-51 T 25-04-2017 A4U88_RS15910 a087b42802ce86f719f08bc0d3679f90 291 SUPERFAMILY SSF52317 8 288 2.59E-56 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS15910 a087b42802ce86f719f08bc0d3679f90 291 Pfam PF01965 DJ-1/PfpI family 78 202 4.5E-9 T 25-04-2017 IPR002818 DJ-1/PfpI A4U88_RS15910 a087b42802ce86f719f08bc0d3679f90 291 PIRSF PIRSF037798 1 291 3.8E-156 T 25-04-2017 IPR017283 Protein deglycase HchA KEGG: 00620+4.2.1.130|MetaCyc: PWY-901 A4U88_RS15910 a087b42802ce86f719f08bc0d3679f90 291 Gene3D G3DSA:3.40.50.880 7 286 1.7E-78 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS00640 e81b8a1daa4158e69dedaf97a75d2885 246 Pfam PF02602 Uroporphyrinogen-III synthase HemD 15 242 6.1E-40 T 25-04-2017 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS00640 e81b8a1daa4158e69dedaf97a75d2885 246 Gene3D G3DSA:3.40.50.10090 123 245 2.4E-10 T 25-04-2017 A4U88_RS00640 e81b8a1daa4158e69dedaf97a75d2885 246 Gene3D G3DSA:3.40.50.10090 6 104 4.9E-8 T 25-04-2017 A4U88_RS00640 e81b8a1daa4158e69dedaf97a75d2885 246 SUPERFAMILY SSF69618 1 245 1.7E-53 T 25-04-2017 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 A4U88_RS17425 01424414d09114b78431b8f4075b931a 415 Pfam PF00654 Voltage gated chloride channel 67 392 3.6E-25 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS17425 01424414d09114b78431b8f4075b931a 415 PRINTS PR00762 Chloride channel signature 153 172 3.0E-7 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS17425 01424414d09114b78431b8f4075b931a 415 PRINTS PR00762 Chloride channel signature 103 122 3.0E-7 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS17425 01424414d09114b78431b8f4075b931a 415 PRINTS PR00762 Chloride channel signature 320 340 3.0E-7 T 25-04-2017 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS17425 01424414d09114b78431b8f4075b931a 415 SUPERFAMILY SSF81340 11 398 5.1E-43 T 25-04-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS17425 01424414d09114b78431b8f4075b931a 415 Gene3D G3DSA:1.10.3080.10 11 363 3.5E-23 T 25-04-2017 IPR014743 Chloride channel, core GO:0005216|GO:0055085 Reactome: R-HSA-2672351 A4U88_RS05220 549afe44f4c23ed67a5a3e6d9a7f4703 434 Gene3D G3DSA:3.30.1110.10 45 94 4.3E-7 T 25-04-2017 A4U88_RS05220 549afe44f4c23ed67a5a3e6d9a7f4703 434 SUPERFAMILY SSF53613 36 305 4.7E-46 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS05220 549afe44f4c23ed67a5a3e6d9a7f4703 434 SUPERFAMILY SSF53613 338 416 4.7E-46 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS05220 549afe44f4c23ed67a5a3e6d9a7f4703 434 Pfam PF00294 pfkB family carbohydrate kinase 75 294 1.6E-9 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS05220 549afe44f4c23ed67a5a3e6d9a7f4703 434 Gene3D G3DSA:3.40.1190.20 95 298 7.6E-49 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS05220 549afe44f4c23ed67a5a3e6d9a7f4703 434 Gene3D G3DSA:3.40.1190.20 337 434 7.6E-49 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS00945 f0b16d47aa927cdccfe11692ae521ef5 384 Gene3D G3DSA:3.40.50.300 1 353 2.7E-25 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00945 f0b16d47aa927cdccfe11692ae521ef5 384 SUPERFAMILY SSF52540 1 355 8.43E-22 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00945 f0b16d47aa927cdccfe11692ae521ef5 384 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 27 326 4.6E-27 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 Gene3D G3DSA:3.40.50.1100 176 391 1.4E-92 T 25-04-2017 A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 PIRSF PIRSF001413 1 396 7.8E-171 T 25-04-2017 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 SUPERFAMILY SSF53686 4 389 6.42E-144 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.755 T 25-04-2017 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 373 5.3E-52 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 25-04-2017 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 3.3E-190 T 25-04-2017 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13030 131f5c2c4a3a4ad6357e3a3ac7725bea 396 Gene3D G3DSA:3.40.50.1100 96 175 5.0E-22 T 25-04-2017 A4U88_RS23350 775071739ee550f5a93cf3d6ab7ad064 308 SUPERFAMILY SSF56752 6 306 8.76E-106 T 25-04-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 A4U88_RS23350 775071739ee550f5a93cf3d6ab7ad064 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 306 3.1E-145 T 25-04-2017 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108 A4U88_RS23350 775071739ee550f5a93cf3d6ab7ad064 308 Gene3D G3DSA:3.30.470.10 6 129 2.4E-43 T 25-04-2017 A4U88_RS23350 775071739ee550f5a93cf3d6ab7ad064 308 Gene3D G3DSA:3.20.10.10 133 295 2.5E-58 T 25-04-2017 A4U88_RS23350 775071739ee550f5a93cf3d6ab7ad064 308 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 222 - T 25-04-2017 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 A4U88_RS23350 775071739ee550f5a93cf3d6ab7ad064 308 Pfam PF01063 Amino-transferase class IV 35 267 2.8E-50 T 25-04-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 A4U88_RS08215 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 25-04-2017 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 A4U88_RS08215 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 71 2.9E-38 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08215 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08215 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS08215 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 25-04-2017 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 A4U88_RS08215 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.8E-27 T 25-04-2017 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 A4U88_RS11980 83c40d07a1aaa19ac11ed20b8964e41c 427 Gene3D G3DSA:1.20.1250.20 18 207 4.1E-22 T 25-04-2017 A4U88_RS11980 83c40d07a1aaa19ac11ed20b8964e41c 427 Gene3D G3DSA:1.20.1250.20 225 403 1.7E-10 T 25-04-2017 A4U88_RS11980 83c40d07a1aaa19ac11ed20b8964e41c 427 Pfam PF05977 Transmembrane secretion effector 16 412 2.2E-29 T 25-04-2017 IPR010290 Transmembrane secretion effector A4U88_RS11980 83c40d07a1aaa19ac11ed20b8964e41c 427 SUPERFAMILY SSF103473 18 403 1.44E-40 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 Pfam PF02107 Flagellar L-ring protein 48 232 3.7E-60 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 Hamap MF_00415 Flagellar L-ring protein [flgH]. 5 231 27.151 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 147 162 7.8E-35 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 74 86 7.8E-35 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 173 189 7.8E-35 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 194 208 7.8E-35 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS14430 ca83d4a69ca8815ffd13e451d8d0e62b 233 PRINTS PR01008 Flagellar L-ring protein signature 210 224 7.8E-35 T 25-04-2017 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 A4U88_RS04525 ff2448e08131b62f46be41dfc0e12de9 208 SUPERFAMILY SSF52499 5 202 3.66E-53 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS04525 ff2448e08131b62f46be41dfc0e12de9 208 Gene3D G3DSA:3.40.50.850 5 204 1.1E-48 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS04525 ff2448e08131b62f46be41dfc0e12de9 208 Pfam PF00857 Isochorismatase family 14 165 9.0E-23 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS07410 452526c7b2af907587b905321fd76328 526 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 29 514 1.7E-214 T 25-04-2017 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 A4U88_RS07410 452526c7b2af907587b905321fd76328 526 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 25 516 54.396 T 25-04-2017 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 A4U88_RS07410 452526c7b2af907587b905321fd76328 526 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 28 516 8.1E-243 T 25-04-2017 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 A4U88_RS07410 452526c7b2af907587b905321fd76328 526 Gene3D G3DSA:3.50.50.60 170 352 3.4E-19 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07410 452526c7b2af907587b905321fd76328 526 Gene3D G3DSA:3.50.50.60 27 95 3.4E-19 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07410 452526c7b2af907587b905321fd76328 526 SUPERFAMILY SSF51905 11 355 1.51E-24 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Gene3D G3DSA:3.30.70.1400 54 136 2.5E-32 T 25-04-2017 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 6.8E-156 T 25-04-2017 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 3.9E-17 T 25-04-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Gene3D G3DSA:2.40.30.110 278 361 2.5E-27 T 25-04-2017 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 SUPERFAMILY SSF103025 3 277 6.44E-92 T 25-04-2017 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Gene3D G3DSA:3.30.1360.120 144 231 2.9E-52 T 25-04-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Gene3D G3DSA:3.30.1360.120 3 53 2.9E-52 T 25-04-2017 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 3.5E-82 T 25-04-2017 IPR006222 Glycine cleavage T-protein-like, N-terminal A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 SUPERFAMILY SSF101790 270 360 7.36E-25 T 25-04-2017 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 PIRSF PIRSF006487 1 363 7.7E-79 T 25-04-2017 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 A4U88_RS20000 1cd284638cff012011a16213ded8b08f 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.992 T 25-04-2017 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 6.8E-264 T 25-04-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Gene3D G3DSA:3.60.20.10 2 239 1.7E-78 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Pfam PF01380 SIS domain 289 418 1.3E-32 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Pfam PF01380 SIS domain 462 591 1.8E-28 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 SUPERFAMILY SSF56235 2 233 1.29E-74 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 SUPERFAMILY SSF53697 245 609 1.02E-113 T 25-04-2017 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Pfam PF13522 Glutamine amidotransferase domain 65 184 2.6E-20 T 25-04-2017 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Gene3D G3DSA:3.40.50.10490 446 609 1.1E-68 T 25-04-2017 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Gene3D G3DSA:3.40.50.10490 245 445 3.3E-64 T 25-04-2017 A4U88_RS24145 2c7bf29996748e9094beefa9ad8cf426 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 41.054 T 25-04-2017 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 A4U88_RS00100 523c1c8ed1ceeb3f47ea465bedf06fb8 250 Gene3D G3DSA:3.20.20.150 1 249 4.7E-84 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS00100 523c1c8ed1ceeb3f47ea465bedf06fb8 250 SUPERFAMILY SSF51658 3 248 9.95E-64 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 6 398 1.1E-229 T 25-04-2017 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0006810|GO:0016020 A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 Pfam PF02754 Cysteine-rich domain 296 379 5.1E-14 T 25-04-2017 IPR004017 Cysteine-rich domain A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 Pfam PF02754 Cysteine-rich domain 166 252 9.8E-14 T 25-04-2017 IPR004017 Cysteine-rich domain A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 Pfam PF13183 4Fe-4S dicluster domain 9 73 7.1E-10 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 59 70 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 12 23 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 SUPERFAMILY SSF46548 8 87 2.27E-16 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS00770 5137ed4ba180fb418e28f4aa68a1c598 399 Gene3D G3DSA:1.10.1060.10 7 89 4.3E-16 T 25-04-2017 A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 PIRSF PIRSF005246 1 1479 0.0 T 25-04-2017 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 Pfam PF16330 MukB hinge domain 645 810 3.0E-74 T 25-04-2017 IPR032520 MukB, hinge domain A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 Gene3D G3DSA:3.40.1140.10 1 226 4.3E-53 T 25-04-2017 A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.064 T 25-04-2017 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 2.0E-14 T 25-04-2017 A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 Pfam PF04310 MukB N-terminal 2 227 7.5E-125 T 25-04-2017 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 SUPERFAMILY SSF52540 22 224 1.46E-23 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 SUPERFAMILY SSF52540 1268 1433 1.25E-6 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08405 9b4b34856c662f61e80a14aba008c0d9 1482 SUPERFAMILY SSF52540 21 55 1.25E-6 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14965 626e1667142afbfdb0da820c9b876da1 337 Pfam PF00589 Phage integrase family 164 308 2.7E-18 T 25-04-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS14965 626e1667142afbfdb0da820c9b876da1 337 SUPERFAMILY SSF56349 61 316 6.08E-45 T 25-04-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 A4U88_RS14965 626e1667142afbfdb0da820c9b876da1 337 Gene3D G3DSA:1.10.443.10 161 317 7.9E-32 T 25-04-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS05615 9c201dd23d7b17517e4a60b58bd0592b 370 Pfam PF01098 Cell cycle protein 22 364 8.0E-123 T 25-04-2017 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 A4U88_RS05615 9c201dd23d7b17517e4a60b58bd0592b 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 1.5E-136 T 25-04-2017 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 A4U88_RS05615 9c201dd23d7b17517e4a60b58bd0592b 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 25-04-2017 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 Pfam PF00593 TonB dependent receptor 456 704 8.1E-34 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 Pfam PF07715 TonB-dependent Receptor Plug Domain 49 157 8.1E-22 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 50 703 1.1E-70 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 Gene3D G3DSA:2.40.170.20 160 705 5.4E-110 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 SUPERFAMILY SSF56935 23 706 1.01E-122 T 25-04-2017 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 Gene3D G3DSA:2.170.130.10 25 159 9.1E-29 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS15375 6e8f751711d2be23bff1fd06971d1341 709 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 40 - T 25-04-2017 IPR010916 TonB box, conserved site A4U88_RS23235 58f578db7bb34fc6562d541f9d432ecb 283 Pfam PF00072 Response regulator receiver domain 162 249 1.3E-4 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS23235 58f578db7bb34fc6562d541f9d432ecb 283 SUPERFAMILY SSF52172 159 282 2.13E-12 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS23235 58f578db7bb34fc6562d541f9d432ecb 283 Pfam PF08667 BetR domain 12 152 1.0E-33 T 25-04-2017 IPR013975 Transcription regulator BetR, N-terminal A4U88_RS23235 58f578db7bb34fc6562d541f9d432ecb 283 Gene3D G3DSA:3.40.50.2300 159 281 3.4E-11 T 25-04-2017 A4U88_RS06875 3051f57471f5b47a7c690d842a05f402 170 Pfam PF09933 Predicted small integral membrane protein (DUF2165) 8 165 4.7E-35 T 25-04-2017 IPR018681 Protein of unknown function DUF2165, transmembrane A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 SUPERFAMILY SSF55120 11 267 4.03E-92 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 Pfam PF01416 tRNA pseudouridine synthase 153 255 5.2E-27 T 25-04-2017 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 Pfam PF01416 tRNA pseudouridine synthase 19 114 7.8E-10 T 25-04-2017 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 12 254 35.273 T 25-04-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 Gene3D G3DSA:3.30.70.660 117 252 8.3E-45 T 25-04-2017 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 13 249 2.0E-77 T 25-04-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 PIRSF PIRSF001430 11 262 8.9E-77 T 25-04-2017 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS17030 6e3bb332353fe1311e64ee3d94c671bb 273 Gene3D G3DSA:3.30.70.580 12 115 1.9E-39 T 25-04-2017 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 25-04-2017 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 SMART SM00518 3 279 6.7E-129 T 25-04-2017 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 SUPERFAMILY SSF51658 1 277 9.03E-101 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 25-04-2017 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 3.3E-107 T 25-04-2017 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 1.6E-40 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 25-04-2017 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 Gene3D G3DSA:3.20.20.150 1 277 1.7E-117 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS16325 0eee15ce9e60d94d92eaa9f9809ae503 279 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 43.314 T 25-04-2017 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 Pfam PF00145 C-5 cytosine-specific DNA methylase 236 301 2.4E-5 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 Pfam PF00145 C-5 cytosine-specific DNA methylase 3 175 8.6E-31 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 Gene3D G3DSA:3.90.120.10 161 291 2.3E-11 T 25-04-2017 A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 107 121 6.3E-10 T 25-04-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 6.3E-10 T 25-04-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 150 163 6.3E-10 T 25-04-2017 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 SUPERFAMILY SSF53335 1 301 9.08E-60 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS15015 3596f641e3efa5e123a925e5ee84b8f3 305 Gene3D G3DSA:3.40.50.150 1 160 5.7E-42 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13065 0c143c3609b3c145e651799f1fec2dd4 179 Pfam PF04279 Intracellular septation protein A 1 175 8.9E-71 T 25-04-2017 IPR006008 Intracellular septation protein A GO:0016021 A4U88_RS13065 0c143c3609b3c145e651799f1fec2dd4 179 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.429 T 25-04-2017 IPR006008 Intracellular septation protein A GO:0016021 A4U88_RS13065 0c143c3609b3c145e651799f1fec2dd4 179 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 1.3E-70 T 25-04-2017 IPR006008 Intracellular septation protein A GO:0016021 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 Gene3D G3DSA:1.20.1250.20 17 200 2.0E-23 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 1.2E-9 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 402 421 1.2E-9 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 1.2E-9 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 304 328 1.2E-9 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 1.2E-9 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 Pfam PF07690 Major Facilitator Superfamily 20 411 1.8E-48 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 Gene3D G3DSA:1.20.1250.20 263 461 2.4E-20 T 25-04-2017 A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 SUPERFAMILY SSF103473 250 447 2.09E-61 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10340 5d697e7b5e8f9eec9ed7d91671d3a1ed 464 SUPERFAMILY SSF103473 10 197 2.09E-61 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16075 bf59e225561dd071edb172f230e382ab 86 Pfam PF00550 Phosphopantetheine attachment site 10 75 3.8E-11 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS16075 bf59e225561dd071edb172f230e382ab 86 SUPERFAMILY SSF47336 3 82 4.45E-15 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS16075 bf59e225561dd071edb172f230e382ab 86 Gene3D G3DSA:1.10.1200.10 2 81 3.8E-14 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS16075 bf59e225561dd071edb172f230e382ab 86 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 25-04-2017 IPR006162 Phosphopantetheine attachment site A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 Pfam PF03466 LysR substrate binding domain 91 294 1.7E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 Gene3D G3DSA:3.40.190.10 94 180 3.0E-23 T 25-04-2017 A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.7E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.7E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.7E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 SUPERFAMILY SSF53850 93 297 4.73E-42 T 25-04-2017 A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 Gene3D G3DSA:3.40.190.10 181 266 3.8E-20 T 25-04-2017 A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 SUPERFAMILY SSF46785 4 115 3.73E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 Gene3D G3DSA:1.10.10.10 5 91 2.1E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16050 e3adb5ec2feacb22ccfc6f61199aa8c9 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 7.0E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11195 05234767b697d7ee1850ad35903e6bcf 238 Gene3D G3DSA:1.10.3720.10 34 223 3.0E-28 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11195 05234767b697d7ee1850ad35903e6bcf 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 62 235 5.9E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11195 05234767b697d7ee1850ad35903e6bcf 238 SUPERFAMILY SSF161098 40 223 9.42E-35 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13325 d4314ed4ca43747726fe79d6ad1cca44 210 Gene3D G3DSA:3.40.50.850 1 209 5.5E-67 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS13325 d4314ed4ca43747726fe79d6ad1cca44 210 SUPERFAMILY SSF52499 2 209 6.02E-56 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS13325 d4314ed4ca43747726fe79d6ad1cca44 210 Pfam PF00857 Isochorismatase family 3 204 2.7E-34 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 508 649 1.8E-60 T 25-04-2017 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 SMART SM00382 37 178 9.9E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Gene3D G3DSA:1.10.8.60 167 242 4.8E-33 T 25-04-2017 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Gene3D G3DSA:3.40.50.300 15 166 3.0E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 SUPERFAMILY SSF52540 35 222 3.07E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 6.9E-136 T 25-04-2017 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 426 506 9.9E-22 T 25-04-2017 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 SUPERFAMILY SSF48019 243 366 5.27E-36 T 25-04-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 362 9.1E-33 T 25-04-2017 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 2.8E-5 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 2.8E-5 T 25-04-2017 IPR001270 ClpA/B family GO:0005524 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Gene3D G3DSA:1.20.272.10 243 362 4.1E-49 T 25-04-2017 A4U88_RS05170 54d27eaac9c9fd8f16c101d6d9798b79 652 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.7E-42 T 25-04-2017 A4U88_RS12240 b044363d54d3a05acbee097ca3587a5a 340 SUPERFAMILY SSF161093 167 338 7.06E-47 T 25-04-2017 A4U88_RS12240 b044363d54d3a05acbee097ca3587a5a 340 Pfam PF01769 Divalent cation transporter 210 331 1.7E-26 T 25-04-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 A4U88_RS12240 b044363d54d3a05acbee097ca3587a5a 340 Gene3D G3DSA:3.10.580.10 15 152 1.2E-14 T 25-04-2017 A4U88_RS12240 b044363d54d3a05acbee097ca3587a5a 340 Pfam PF00571 CBS domain 93 142 0.0057 T 25-04-2017 IPR000644 CBS domain A4U88_RS12240 b044363d54d3a05acbee097ca3587a5a 340 SUPERFAMILY SSF54631 24 162 6.01E-20 T 25-04-2017 A4U88_RS12240 b044363d54d3a05acbee097ca3587a5a 340 Gene3D G3DSA:1.10.357.20 166 339 1.6E-54 T 25-04-2017 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 SUPERFAMILY SSF46785 3 86 7.4E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 9.0E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 2.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 2.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 2.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 Gene3D G3DSA:1.10.10.10 3 86 3.5E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 Gene3D G3DSA:3.40.190.10 93 179 3.9E-20 T 25-04-2017 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 Pfam PF03466 LysR substrate binding domain 89 291 2.6E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 Gene3D G3DSA:3.40.190.10 197 256 1.2E-8 T 25-04-2017 A4U88_RS15715 f06d3204511f0130b1adbac9555a917f 298 SUPERFAMILY SSF53850 82 292 5.07E-31 T 25-04-2017 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 Pfam PF08329 Chitinase A, N-terminal domain 23 155 7.7E-61 T 25-04-2017 IPR013540 Chitinase A N-terminal GO:0004568|GO:0006032 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 SUPERFAMILY SSF81296 24 132 6.44E-40 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 Gene3D G3DSA:2.60.40.10 24 130 4.2E-46 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 SMART SM00089 61 133 4.7E-8 T 25-04-2017 IPR022409 PKD/Chitinase domain A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 SUPERFAMILY SSF54556 444 516 1.69E-21 T 25-04-2017 IPR029070 Chitinase insertion domain A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 SUPERFAMILY SSF51445 517 560 5.55E-100 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 SUPERFAMILY SSF51445 134 444 5.55E-100 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 Pfam PF00704 Glycosyl hydrolases family 18 160 544 1.0E-81 T 25-04-2017 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 Gene3D G3DSA:3.20.20.80 521 559 4.6E-111 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 Gene3D G3DSA:3.20.20.80 139 445 4.6E-111 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 ProSitePatterns PS01095 Chitinases family 18 active site. 307 315 - T 25-04-2017 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 SMART SM00636 158 544 3.0E-167 T 25-04-2017 IPR011583 Chitinase II GO:0004568|GO:0006032 A4U88_RS00425 f03dbd5f4063747547388747f4a00393 563 Gene3D G3DSA:3.10.50.10 446 518 2.0E-29 T 25-04-2017 IPR029070 Chitinase insertion domain A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 3.8E-140 T 25-04-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 SUPERFAMILY SSF51604 143 427 5.52E-127 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 SMART SM01193 4 134 1.7E-93 T 25-04-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 SUPERFAMILY SSF54826 3 138 3.34E-56 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PIRSF PIRSF001400 1 429 1.6E-191 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PRINTS PR00148 Enolase signature 368 385 1.2E-44 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PRINTS PR00148 Enolase signature 316 327 1.2E-44 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 PRINTS PR00148 Enolase signature 339 353 1.2E-44 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 Hamap MF_00318 Enolase [eno]. 2 416 44.161 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 Gene3D G3DSA:3.30.390.10 3 126 1.5E-54 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 SMART SM01192 143 430 1.3E-211 T 25-04-2017 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 25-04-2017 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 2.4E-205 T 25-04-2017 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 Gene3D G3DSA:3.20.20.120 128 428 9.3E-136 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS03535 16c28e595ca748b8646e4256b2ad9a19 431 Pfam PF03952 Enolase, N-terminal domain 4 134 1.9E-58 T 25-04-2017 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS03175 19831e777d9ef125b4acaaf5b75ee374 125 Pfam PF04379 Protein of unknown function (DUF525) 18 102 3.5E-34 T 25-04-2017 IPR007474 ApaG domain A4U88_RS03175 19831e777d9ef125b4acaaf5b75ee374 125 Gene3D G3DSA:2.60.40.1470 6 125 1.5E-46 T 25-04-2017 IPR007474 ApaG domain A4U88_RS03175 19831e777d9ef125b4acaaf5b75ee374 125 SUPERFAMILY SSF110069 5 125 1.7E-48 T 25-04-2017 IPR007474 ApaG domain A4U88_RS03175 19831e777d9ef125b4acaaf5b75ee374 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 32.421 T 25-04-2017 IPR023065 Uncharacterised protein family ApaG A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.8E-10 T 25-04-2017 A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.8E-10 T 25-04-2017 A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.8E-10 T 25-04-2017 A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 Gene3D G3DSA:3.40.30.10 2 107 8.7E-42 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 3.5E-39 T 25-04-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 SUPERFAMILY SSF52833 2 107 3.19E-41 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 PIRSF PIRSF000077 2 108 4.2E-45 T 25-04-2017 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 A4U88_RS00535 712cf35724425e252f606d0e25267aeb 108 Pfam PF00085 Thioredoxin 5 106 3.1E-34 T 25-04-2017 IPR013766 Thioredoxin domain GO:0045454 A4U88_RS14265 2ee736937afa117302406b699901fb5c 250 PIRSF PIRSF039085 1 249 5.2E-114 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS14265 2ee736937afa117302406b699901fb5c 250 Gene3D G3DSA:3.40.50.300 3 245 5.3E-88 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14265 2ee736937afa117302406b699901fb5c 250 Pfam PF00005 ABC transporter 19 173 4.3E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS14265 2ee736937afa117302406b699901fb5c 250 SUPERFAMILY SSF52540 4 243 8.79E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14265 2ee736937afa117302406b699901fb5c 250 SMART SM00382 28 221 6.2E-21 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS14265 2ee736937afa117302406b699901fb5c 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 SUPERFAMILY SSF53328 88 281 3.14E-59 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PIRSF PIRSF036480 6 282 1.4E-114 T 25-04-2017 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 6.4E-69 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 6.4E-69 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 6.4E-69 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 6.4E-69 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 6.4E-69 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 6.4E-69 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 2.8E-130 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 45.997 T 25-04-2017 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 Pfam PF00551 Formyl transferase 88 264 4.9E-55 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 Gene3D G3DSA:3.40.50.170 87 279 1.2E-56 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 Pfam PF01842 ACT domain 10 70 1.0E-6 T 25-04-2017 IPR002912 ACT domain GO:0008152|GO:0016597 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 Gene3D G3DSA:3.30.70.260 7 73 9.0E-12 T 25-04-2017 A4U88_RS13250 f34e1f31c22b0a704372fc2240839869 282 SUPERFAMILY SSF55021 8 59 2.5E-8 T 25-04-2017 A4U88_RS14090 c58a1c02e49b55cadbe7fce1cb9d0f25 301 SUPERFAMILY SSF53448 3 193 7.5E-32 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS14090 c58a1c02e49b55cadbe7fce1cb9d0f25 301 Pfam PF00535 Glycosyl transferase family 2 4 150 1.0E-20 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS14090 c58a1c02e49b55cadbe7fce1cb9d0f25 301 Gene3D G3DSA:3.90.550.10 1 192 4.2E-30 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS16675 49db1675ba654098fac451bab1116594 880 SUPERFAMILY SSF101904 533 850 3.01E-114 T 25-04-2017 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Gene3D G3DSA:1.10.268.10 363 497 3.1E-48 T 25-04-2017 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 SMART SM00434 11 499 9.4E-301 T 25-04-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 789 3.0E-13 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 737 5.6E-16 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 1.5E-12 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.4E-8 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 2.9E-11 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.4E-10 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Gene3D G3DSA:3.30.1360.40 236 333 2.0E-38 T 25-04-2017 IPR024946 Arginine repressor C-terminal-like domain A4U88_RS16675 49db1675ba654098fac451bab1116594 880 SUPERFAMILY SSF56719 30 521 9.29E-183 T 25-04-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 25-04-2017 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Gene3D G3DSA:3.90.199.10 34 216 1.4E-84 T 25-04-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Gene3D G3DSA:2.120.10.90 531 839 1.5E-144 T 25-04-2017 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 2.2E-152 T 25-04-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS16675 49db1675ba654098fac451bab1116594 880 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.671 T 25-04-2017 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS14015 da3ed28fd3941c3118ff0c66f94e1feb 361 Pfam PF00487 Fatty acid desaturase 66 338 7.0E-32 T 25-04-2017 IPR005804 Fatty acid desaturase domain GO:0006629 A4U88_RS07825 5c9277e9eda801d7ae3d87a31c2b93fd 245 SUPERFAMILY SSF51366 1 242 3.63E-65 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS07825 5c9277e9eda801d7ae3d87a31c2b93fd 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 7.8E-78 T 25-04-2017 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 A4U88_RS07825 5c9277e9eda801d7ae3d87a31c2b93fd 245 Gene3D G3DSA:3.20.20.70 1 243 4.0E-79 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS07825 5c9277e9eda801d7ae3d87a31c2b93fd 245 Pfam PF00977 Histidine biosynthesis protein 1 233 9.6E-77 T 25-04-2017 IPR006062 Histidine biosynthesis GO:0000105 A4U88_RS07825 5c9277e9eda801d7ae3d87a31c2b93fd 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.424 T 25-04-2017 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 SUPERFAMILY SSF46785 4 85 9.31E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 Pfam PF03466 LysR substrate binding domain 88 294 6.1E-39 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 Gene3D G3DSA:1.10.10.10 3 87 4.2E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 5.2E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 Gene3D G3DSA:3.40.190.10 92 173 1.8E-21 T 25-04-2017 A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 SUPERFAMILY SSF53850 89 299 9.05E-40 T 25-04-2017 A4U88_RS23130 1e6e399f8425debd3248d758b6da6b81 302 Gene3D G3DSA:3.40.190.10 174 264 5.4E-19 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 SUPERFAMILY SSF69349 437 522 3.06E-15 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 Pfam PF05954 Phage late control gene D protein (GPD) 24 326 3.9E-77 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 19 518 4.5E-161 T 25-04-2017 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 Gene3D G3DSA:2.40.50.230 366 446 4.1E-35 T 25-04-2017 IPR006531 Gp5 N-terminal A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 SUPERFAMILY SSF69279 15 179 2.25E-53 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 SUPERFAMILY SSF69279 189 359 5.1E-39 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 SUPERFAMILY SSF69255 359 446 2.35E-30 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 Gene3D G3DSA:3.55.50.10 94 181 6.0E-36 T 25-04-2017 A4U88_RS15535 48bda82de4b11e5a069a76a5898d1691 753 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 17 501 2.0E-179 T 25-04-2017 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 SMART SM00357 5 69 1.2E-33 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.7E-33 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 Gene3D G3DSA:2.40.50.140 4 67 4.9E-32 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 25-04-2017 IPR019844 Cold-shock conserved site A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 SUPERFAMILY SSF50249 3 68 7.5E-26 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 PRINTS PR00050 Cold shock protein signature 27 36 1.4E-18 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 PRINTS PR00050 Cold shock protein signature 6 21 1.4E-18 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 PRINTS PR00050 Cold shock protein signature 42 60 1.4E-18 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS05555 93e68c89387b5713f3c0cdae5295164e 69 PIRSF PIRSF002599 1 69 6.7E-26 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS07960 6cca04087d06a887e239e717da1d7395 212 Pfam PF00419 Fimbrial protein 59 211 6.5E-8 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07960 6cca04087d06a887e239e717da1d7395 212 SUPERFAMILY SSF49401 53 212 4.18E-29 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS07960 6cca04087d06a887e239e717da1d7395 212 Gene3D G3DSA:2.60.40.1090 52 211 1.0E-28 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 Gene3D G3DSA:3.20.20.80 3 460 6.4E-139 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 Pfam PF00232 Glycosyl hydrolase family 1 3 459 8.2E-130 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 SUPERFAMILY SSF51445 2 461 9.64E-156 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 384 395 1.0E-14 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 1.0E-14 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 429 441 1.0E-14 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 1.0E-14 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 405 422 1.0E-14 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS03720 45a72c6fcd28c35731850a31b919a12b 461 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 25-04-2017 IPR018120 Glycoside hydrolase family 1, active site A4U88_RS07135 83522c969837578c8dea5e62e11d6934 209 PIRSF PIRSF010372 1 208 1.4E-64 T 25-04-2017 IPR007396 Transcriptional regulator PAI 2-type A4U88_RS07135 83522c969837578c8dea5e62e11d6934 209 SUPERFAMILY SSF50475 11 192 2.93E-37 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS07135 83522c969837578c8dea5e62e11d6934 209 Gene3D G3DSA:2.30.110.10 1 207 1.4E-72 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS07135 83522c969837578c8dea5e62e11d6934 209 Pfam PF04299 Putative FMN-binding domain 1 167 3.3E-59 T 25-04-2017 IPR007396 Transcriptional regulator PAI 2-type A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 2.2E-40 T 25-04-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 2.2E-40 T 25-04-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 2.2E-40 T 25-04-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 2.2E-40 T 25-04-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 25-04-2017 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 38.265 T 25-04-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 5.4E-47 T 25-04-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 Gene3D G3DSA:3.90.1170.10 22 133 5.5E-54 T 25-04-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 2.0E-59 T 25-04-2017 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 SUPERFAMILY SSF54686 3 133 2.75E-55 T 25-04-2017 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22310 9dd0a6fcccb008f4c1fd345e2136a221 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 25-04-2017 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 Gene3D G3DSA:3.40.190.10 179 261 3.2E-7 T 25-04-2017 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 SUPERFAMILY SSF46785 6 86 1.53E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 Gene3D G3DSA:3.40.190.10 93 178 2.1E-24 T 25-04-2017 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 Gene3D G3DSA:1.10.10.10 4 82 2.0E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.5E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 SUPERFAMILY SSF53850 90 296 3.8E-47 T 25-04-2017 A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 Pfam PF03466 LysR substrate binding domain 89 294 1.1E-46 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20790 77c338ee481f55295ce9664dba03e580 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 63 9.1E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS04725 d903063ef6cd5c0fb5efd927b706aa4c 410 Gene3D G3DSA:3.60.21.10 1 278 6.9E-65 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS04725 d903063ef6cd5c0fb5efd927b706aa4c 410 SUPERFAMILY SSF56300 1 141 1.08E-56 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS04725 d903063ef6cd5c0fb5efd927b706aa4c 410 SUPERFAMILY SSF56300 170 341 1.08E-56 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS04725 d903063ef6cd5c0fb5efd927b706aa4c 410 Pfam PF00149 Calcineurin-like phosphoesterase 1 93 9.4E-13 T 25-04-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 A4U88_RS04725 d903063ef6cd5c0fb5efd927b706aa4c 410 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 5.5E-77 T 25-04-2017 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 A4U88_RS04725 d903063ef6cd5c0fb5efd927b706aa4c 410 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 282 379 1.8E-24 T 25-04-2017 IPR026843 Nuclease SbcCD subunit D, C-terminal domain A4U88_RS16550 d3e8927786012c8e582ecc756ec51e52 112 Pfam PF05939 Phage minor tail protein 4 110 1.8E-34 T 25-04-2017 IPR010265 Bacteriophage lambda, GpM, minor tail A4U88_RS23820 634f189ae5cf6e6dd0f57f78b9f83350 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 36.49 T 25-04-2017 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS23820 634f189ae5cf6e6dd0f57f78b9f83350 213 Gene3D G3DSA:3.40.50.2020 7 212 1.0E-82 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS23820 634f189ae5cf6e6dd0f57f78b9f83350 213 SUPERFAMILY SSF53271 2 212 9.37E-50 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS23820 634f189ae5cf6e6dd0f57f78b9f83350 213 Pfam PF00156 Phosphoribosyl transferase domain 48 162 1.7E-11 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS23820 634f189ae5cf6e6dd0f57f78b9f83350 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 4.7E-68 T 25-04-2017 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 SUPERFAMILY SSF52540 317 501 1.59E-35 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 ProSitePatterns PS00211 ABC transporters family signature. 415 429 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 SUPERFAMILY SSF52540 11 202 8.75E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 Gene3D G3DSA:3.40.50.300 317 508 3.4E-32 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 Gene3D G3DSA:3.40.50.300 17 224 7.5E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 Pfam PF00005 ABC transporter 20 154 1.9E-24 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 Pfam PF00005 ABC transporter 318 443 2.2E-18 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 SMART SM00382 29 199 1.3E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12220 153e1fba0b59e6509a74e4bb2f3f837c 576 SMART SM00382 322 488 7.0E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS23090 73f7e998b6823ce5829496b8c953d0b7 139 Gene3D G3DSA:3.10.180.10 12 135 8.5E-27 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS23090 73f7e998b6823ce5829496b8c953d0b7 139 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 133 9.2E-17 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS23090 73f7e998b6823ce5829496b8c953d0b7 139 SUPERFAMILY SSF54593 4 135 4.54E-24 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 6.9E-83 T 25-04-2017 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 46.889 T 25-04-2017 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 PIRSF PIRSF000532 1 320 3.1E-131 T 25-04-2017 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 Pfam PF00365 Phosphofructokinase 4 276 1.2E-108 T 25-04-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 Gene3D G3DSA:3.40.50.450 2 215 1.2E-74 T 25-04-2017 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 1.0E-126 T 25-04-2017 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 SUPERFAMILY SSF53784 3 310 7.32E-114 T 25-04-2017 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS23620 6ff3e50440ab1b726026e820209034b8 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 25-04-2017 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 SUPERFAMILY SSF48179 202 380 6.12E-46 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 Gene3D G3DSA:3.40.50.720 2 200 1.2E-37 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 SUPERFAMILY SSF51735 1 201 8.57E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 3.0E-25 T 25-04-2017 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 376 41.42 T 25-04-2017 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 370 1.7E-63 T 25-04-2017 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 25-04-2017 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 9.7E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 9.7E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 PRINTS PR00084 Mannitol dehydrogenase signature 168 183 9.7E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 9.7E-18 T 25-04-2017 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 A4U88_RS00150 d3c577a48daf30a4c0c85de37341be11 381 Gene3D G3DSA:1.10.1040.10 201 380 2.8E-47 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS14335 805573a0668ce5964acf6d01daa2515b 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 68 84 1.8E-18 T 25-04-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 A4U88_RS14335 805573a0668ce5964acf6d01daa2515b 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 33 49 1.8E-18 T 25-04-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 A4U88_RS14335 805573a0668ce5964acf6d01daa2515b 104 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 89 102 1.8E-18 T 25-04-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 A4U88_RS14335 805573a0668ce5964acf6d01daa2515b 104 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 2 103 5.8E-28 T 25-04-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 A4U88_RS14335 805573a0668ce5964acf6d01daa2515b 104 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 4 104 18.067 T 25-04-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 A4U88_RS14335 805573a0668ce5964acf6d01daa2515b 104 Pfam PF02049 Flagellar hook-basal body complex protein FliE 20 104 4.2E-29 T 25-04-2017 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 A4U88_RS07380 9eccdd7b66fbb9f9ba05321f0cb07f10 238 SUPERFAMILY SSF141868 8 222 4.18E-27 T 25-04-2017 IPR001633 EAL domain A4U88_RS07380 9eccdd7b66fbb9f9ba05321f0cb07f10 238 Pfam PF00563 EAL domain 8 222 8.1E-29 T 25-04-2017 IPR001633 EAL domain A4U88_RS07380 9eccdd7b66fbb9f9ba05321f0cb07f10 238 SMART SM00052 1 229 4.0E-6 T 25-04-2017 IPR001633 EAL domain A4U88_RS07380 9eccdd7b66fbb9f9ba05321f0cb07f10 238 Gene3D G3DSA:3.20.20.450 9 228 5.2E-27 T 25-04-2017 IPR001633 EAL domain A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 25-04-2017 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 25-04-2017 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 SUPERFAMILY SSF56784 3 157 2.89E-38 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Gene3D G3DSA:3.30.230.40 258 355 7.6E-32 T 25-04-2017 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 149 7.2E-23 T 25-04-2017 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Pfam PF08645 Polynucleotide kinase 3 phosphatase 4 112 1.1E-4 T 25-04-2017 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Gene3D G3DSA:3.30.230.40 167 253 2.1E-38 T 25-04-2017 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 144 4.1E-44 T 25-04-2017 IPR006543 Histidinol-phosphate phosphatase GO:0016791 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 SUPERFAMILY SSF54211 167 251 1.19E-31 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 4.3E-65 T 25-04-2017 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 7.3E-76 T 25-04-2017 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 37.298 T 25-04-2017 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 SUPERFAMILY SSF54211 252 342 6.45E-32 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Gene3D G3DSA:3.40.50.1000 3 158 2.9E-40 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS07835 4eb0a2bdd19f7fe33ea6a9e642671c4c 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 54.032 T 25-04-2017 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 A4U88_RS13180 490282275dea64dcc02838fda8200865 302 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 76 2.2E-13 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS13180 490282275dea64dcc02838fda8200865 302 SUPERFAMILY SSF161098 100 283 1.01E-23 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13180 490282275dea64dcc02838fda8200865 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 300 9.6E-26 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13180 490282275dea64dcc02838fda8200865 302 Gene3D G3DSA:1.10.3720.10 102 299 3.4E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS15985 92043537ce90a4b60259362a6bd1129c 310 Pfam PF05368 NmrA-like family 16 247 4.8E-20 T 25-04-2017 IPR008030 NmrA-like domain Reactome: R-HSA-70635 A4U88_RS15985 92043537ce90a4b60259362a6bd1129c 310 SUPERFAMILY SSF51735 10 259 4.84E-23 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15985 92043537ce90a4b60259362a6bd1129c 310 Gene3D G3DSA:3.40.50.720 9 196 5.0E-17 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 250 2.2E-108 T 25-04-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 Hamap MF_01974 Methionine aminopeptidase [map]. 3 251 43.337 T 25-04-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 25-04-2017 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 Gene3D G3DSA:3.90.230.10 3 259 3.1E-99 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 Pfam PF00557 Metallopeptidase family M24 13 242 1.9E-51 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 9.6E-23 T 25-04-2017 IPR001714 Peptidase M24, methionine aminopeptidase A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 9.6E-23 T 25-04-2017 IPR001714 Peptidase M24, methionine aminopeptidase A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 9.6E-23 T 25-04-2017 IPR001714 Peptidase M24, methionine aminopeptidase A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 9.6E-23 T 25-04-2017 IPR001714 Peptidase M24, methionine aminopeptidase A4U88_RS19280 1689881ccf592b27b41126925e4e0787 264 SUPERFAMILY SSF55920 3 255 2.62E-90 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Pfam PF01225 Mur ligase family, catalytic domain 24 90 7.1E-10 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Gene3D G3DSA:3.40.1390.10 1 80 8.3E-27 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 SUPERFAMILY SSF63418 1 97 3.27E-27 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 448 34.407 T 25-04-2017 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 SUPERFAMILY SSF53623 100 311 7.06E-59 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 SUPERFAMILY SSF53244 314 447 9.39E-38 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Gene3D G3DSA:3.40.1190.10 82 311 5.8E-78 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 447 1.3E-140 T 25-04-2017 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 396 4.0E-14 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Gene3D G3DSA:3.90.190.20 314 450 4.1E-43 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03345 9cc2e2d17afe8b8891a7750df1866b0e 453 Pfam PF08245 Mur ligase middle domain 106 294 1.5E-47 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS02830 12460305db2b22a37f1745540bab4357 346 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 45.733 T 25-04-2017 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS02830 12460305db2b22a37f1745540bab4357 346 Pfam PF05175 Methyltransferase small domain 167 333 5.7E-60 T 25-04-2017 IPR007848 Methyltransferase small domain GO:0008168 A4U88_RS02830 12460305db2b22a37f1745540bab4357 346 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 1.1E-54 T 25-04-2017 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS02830 12460305db2b22a37f1745540bab4357 346 SUPERFAMILY SSF53335 153 315 6.54E-29 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS02830 12460305db2b22a37f1745540bab4357 346 Gene3D G3DSA:3.40.50.150 157 331 2.7E-26 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS02830 12460305db2b22a37f1745540bab4357 346 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 SMART SM00079 23 244 0.0021 T 25-04-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 SUPERFAMILY SSF53850 1 243 2.24E-71 T 25-04-2017 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 242 5.4E-87 T 25-04-2017 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 46 59 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 Gene3D G3DSA:3.40.190.10 204 243 5.7E-45 T 25-04-2017 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 Gene3D G3DSA:3.40.190.10 21 109 5.7E-45 T 25-04-2017 A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 243 1.5E-70 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 SMART SM00062 23 243 5.9E-86 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS08100 37a550b423e486fce852a5cb66549d4e 244 Gene3D G3DSA:3.40.190.10 110 202 2.1E-28 T 25-04-2017 A4U88_RS00705 9ceb092bacdb3619463d06660fe34aec 295 SUPERFAMILY SSF103481 47 145 1.7E-13 T 25-04-2017 A4U88_RS00705 9ceb092bacdb3619463d06660fe34aec 295 Pfam PF00892 EamA-like transporter family 9 142 1.2E-16 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS00705 9ceb092bacdb3619463d06660fe34aec 295 TIGRFAM TIGR00688 rarD: protein RarD 8 261 5.9E-103 T 25-04-2017 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 A4U88_RS00705 9ceb092bacdb3619463d06660fe34aec 295 SUPERFAMILY SSF103481 192 285 4.05E-8 T 25-04-2017 A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 Pfam PF00664 ABC transporter transmembrane region 68 288 3.7E-9 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 SUPERFAMILY SSF52540 336 572 4.91E-72 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 SUPERFAMILY SSF90123 7 327 7.06E-39 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 7 534 3.0E-157 T 25-04-2017 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 SMART SM00382 365 556 2.9E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 Pfam PF00005 ABC transporter 356 503 4.8E-31 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 Gene3D G3DSA:3.40.50.300 339 568 7.7E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08225 a2575d80f03b6021f660f6adb269e0b7 579 Gene3D G3DSA:1.20.1560.10 7 322 5.3E-28 T 25-04-2017 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 SMART SM00487 9 425 2.0E-27 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 SUPERFAMILY SSF46600 622 666 3.27E-12 T 25-04-2017 IPR001943 UVR domain GO:0005515 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 SMART SM00490 460 546 8.9E-20 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Gene3D G3DSA:3.40.50.300 419 580 1.1E-38 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 665 43.742 T 25-04-2017 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Pfam PF12344 Ultra-violet resistance protein B 552 593 1.6E-20 T 25-04-2017 IPR024759 UvrB, YAD/RRR-motif-containing domain A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Gene3D G3DSA:3.30.2060.10 159 230 6.6E-9 T 25-04-2017 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Gene3D G3DSA:4.10.860.10 626 669 1.6E-19 T 25-04-2017 IPR001943 UVR domain GO:0005515 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 SUPERFAMILY SSF52540 3 415 5.09E-135 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Gene3D G3DSA:3.40.50.300 5 89 2.7E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Gene3D G3DSA:3.40.50.300 388 406 2.7E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Gene3D G3DSA:3.40.50.300 278 338 2.7E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Pfam PF02151 UvrB/uvrC motif 631 665 1.8E-8 T 25-04-2017 IPR001943 UVR domain GO:0005515 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Pfam PF04851 Type III restriction enzyme, res subunit 11 92 2.9E-9 T 25-04-2017 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 Pfam PF00271 Helicase conserved C-terminal domain 434 545 5.4E-19 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 663 0.0 T 25-04-2017 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 SUPERFAMILY SSF52540 459 581 1.3E-35 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06285 4df2d7b6c2671d2e8dfc8678c48b7906 670 SUPERFAMILY SSF52540 37 82 1.3E-35 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04215 97adfe09946981754d8b7ae906c41145 74 Pfam PF13693 Winged helix-turn-helix DNA-binding 5 68 2.4E-33 T 25-04-2017 A4U88_RS04215 97adfe09946981754d8b7ae906c41145 74 SUPERFAMILY SSF47413 3 68 4.5E-28 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS04215 97adfe09946981754d8b7ae906c41145 74 Gene3D G3DSA:1.10.260.40 1 67 1.8E-37 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 Pfam PF00571 CBS domain 143 189 1.1E-4 T 25-04-2017 IPR000644 CBS domain A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 Pfam PF00571 CBS domain 69 124 1.5E-8 T 25-04-2017 IPR000644 CBS domain A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 Gene3D G3DSA:3.10.580.10 55 196 2.5E-22 T 25-04-2017 A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 SUPERFAMILY SSF54631 66 202 3.79E-32 T 25-04-2017 A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 SUPERFAMILY SSF56176 203 289 3.54E-24 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 SMART SM00116 78 127 1.4 T 25-04-2017 IPR000644 CBS domain A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 SMART SM00116 141 189 3.7 T 25-04-2017 IPR000644 CBS domain A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 Pfam PF03471 Transporter associated domain 206 281 5.0E-22 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 SMART SM01091 205 283 2.8E-30 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS05695 170c8529e77ef8977c947d59f2db431d 292 Gene3D G3DSA:3.30.465.10 197 283 1.2E-30 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS02560 132aa7d351a2a4844f82145753862e31 216 Pfam PF01618 MotA/TolQ/ExbB proton channel family 74 183 1.2E-25 T 25-04-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 SUPERFAMILY SSF50249 6 82 1.33E-33 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 1.0E-38 T 25-04-2017 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 2.0E-34 T 25-04-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 3 81 26.101 T 25-04-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 4.5E-14 T 25-04-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 4.5E-14 T 25-04-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 4.5E-14 T 25-04-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 Pfam PF00366 Ribosomal protein S17 10 76 7.2E-34 T 25-04-2017 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 Gene3D G3DSA:2.40.50.140 6 82 7.6E-37 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22300 64785cfc4ceead4666b66fb658fcd270 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 25-04-2017 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 Gene3D G3DSA:1.10.10.10 123 220 2.1E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 Pfam PF00072 Response regulator receiver domain 3 111 3.1E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 218 5.0E-99 T 25-04-2017 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 SUPERFAMILY SSF52172 1 173 4.07E-38 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 Gene3D G3DSA:3.40.50.2300 1 119 6.5E-36 T 25-04-2017 A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 SMART SM00448 1 111 6.5E-37 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 SMART SM00862 144 219 2.5E-23 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS07310 2e3bb3942956638f1db70dd6e6faee02 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 218 4.1E-25 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 Gene3D G3DSA:1.10.10.60 7 57 3.0E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 Gene3D G3DSA:1.10.10.60 58 106 4.1E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 SUPERFAMILY SSF46689 58 107 2.37E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 SUPERFAMILY SSF46689 6 55 4.87E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 SMART SM00342 21 104 4.2E-29 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 Pfam PF12833 Helix-turn-helix domain 27 105 1.4E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 2.9E-7 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS09335 bbf3bcb9a222e2db291ee64af3e90411 118 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 2.9E-7 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:3.30.70.20 5 56 1.3E-10 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:3.30.70.20 436 465 1.9E-77 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:3.30.70.20 236 358 1.9E-77 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 SUPERFAMILY SSF54862 1 500 2.51E-180 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Pfam PF13247 4Fe-4S dicluster domain 175 271 4.1E-37 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 358 436 1.9E-30 T 25-04-2017 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:1.10.3650.10 359 434 3.4E-32 T 25-04-2017 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:3.30.70.20 140 141 7.0E-12 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:3.30.70.20 174 195 7.0E-12 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 Gene3D G3DSA:3.30.70.20 196 235 3.7E-25 T 25-04-2017 A4U88_RS14065 ed8f8c9a89fe0d332dfe2f041e1da7bf 514 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 491 5.3E-303 T 25-04-2017 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 Gene3D G3DSA:1.10.3140.10 12 150 7.9E-55 T 25-04-2017 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 SUPERFAMILY SSF56645 13 282 2.65E-81 T 25-04-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 Gene3D G3DSA:2.40.110.10 152 273 1.0E-47 T 25-04-2017 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 TIGRFAM TIGR02310 HpaB-2: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component 2 520 0.0 T 25-04-2017 IPR012688 4-HPA 3-monooxygenase large component, gammaproteobacteria GO:0010124|GO:0016712|GO:0050660 KEGG: 00350+1.14.14.9|MetaCyc: PWY-7431 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 SUPERFAMILY SSF47203 272 493 5.23E-45 T 25-04-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 PIRSF PIRSF000331 11 501 2.2E-196 T 25-04-2017 IPR004925 HpaB/PvcC/4-BUDH A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 PIRSF PIRSF500125 1 518 9.9E-282 T 25-04-2017 IPR024677 4-HPA 3-monooxygenase large component/Pyoverdin chromophore biosynthetic protein A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 Pfam PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal 288 489 4.5E-64 T 25-04-2017 IPR024719 HpaB/PvcC/4-BUDH C-terminal A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 Gene3D G3DSA:1.20.140.10 274 491 8.9E-36 T 25-04-2017 A4U88_RS02720 e6d05343ce203689648bd660cb7e151f 520 Pfam PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal 15 281 3.4E-92 T 25-04-2017 IPR024674 HpaB/PvcC/4-BUDH N-terminal A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 Pfam PF07729 FCD domain 110 221 1.5E-24 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 Gene3D G3DSA:1.20.120.530 106 222 5.7E-22 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 Gene3D G3DSA:1.10.10.10 9 87 2.4E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 SUPERFAMILY SSF48008 107 222 4.84E-24 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 SMART SM00345 18 77 3.5E-19 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 SUPERFAMILY SSF46785 10 81 9.99E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 1.7E-18 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 6.2E-10 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 6.2E-10 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS24015 4667222d190036e911d7f161e924aea7 229 SMART SM00895 106 227 6.3E-21 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS07585 3ea3a2b007b1f26ab65c602d61eeeecd 247 Gene3D G3DSA:3.40.50.620 38 170 2.3E-9 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS07585 3ea3a2b007b1f26ab65c602d61eeeecd 247 PIRSF PIRSF005011 1 247 9.6E-156 T 25-04-2017 IPR023604 Uncharacterised protein family SanA A4U88_RS07585 3ea3a2b007b1f26ab65c602d61eeeecd 247 Pfam PF02698 DUF218 domain 48 170 2.5E-18 T 25-04-2017 IPR003848 Domain of unknown function DUF218 A4U88_RS11325 74f03a62e79e634090a2a63cf2f42af8 264 Pfam PF12697 Alpha/beta hydrolase family 29 256 1.8E-21 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS11325 74f03a62e79e634090a2a63cf2f42af8 264 SUPERFAMILY SSF53474 9 264 2.55E-52 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11325 74f03a62e79e634090a2a63cf2f42af8 264 Gene3D G3DSA:3.40.50.1820 9 263 3.7E-52 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS14130 8fa768d1e431e9390fc5d49361652927 299 Pfam PF00486 Transcriptional regulatory protein, C terminal 19 91 1.2E-16 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS14130 8fa768d1e431e9390fc5d49361652927 299 SUPERFAMILY SSF46894 15 92 5.39E-15 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS14130 8fa768d1e431e9390fc5d49361652927 299 Gene3D G3DSA:1.10.10.10 15 95 3.3E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14130 8fa768d1e431e9390fc5d49361652927 299 SMART SM00862 19 92 2.5E-13 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 SUPERFAMILY SSF46785 6 112 4.77E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 Pfam PF03466 LysR substrate binding domain 89 290 7.3E-43 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 Gene3D G3DSA:3.40.190.10 93 178 4.8E-21 T 25-04-2017 A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 Gene3D G3DSA:1.10.10.10 4 83 4.9E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 SUPERFAMILY SSF53850 90 294 1.36E-45 T 25-04-2017 A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.6E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS05495 b0758dd34c7951e2a25ab304caeb9ae2 305 Gene3D G3DSA:3.40.190.10 179 259 2.0E-9 T 25-04-2017 A4U88_RS04780 ce7a0c4cb3606fe415be91b49da45f72 191 Pfam PF04336 Protein of unknown function, DUF479 81 185 3.7E-34 T 25-04-2017 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 A4U88_RS04780 ce7a0c4cb3606fe415be91b49da45f72 191 PIRSF PIRSF011489 1 191 3.4E-78 T 25-04-2017 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 A4U88_RS04780 ce7a0c4cb3606fe415be91b49da45f72 191 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 1 191 51.418 T 25-04-2017 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 A4U88_RS00990 c81bf553ac35e44f3de6b37788bbb7d8 87 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 84 23.548 T 25-04-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 A4U88_RS00990 c81bf553ac35e44f3de6b37788bbb7d8 87 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 46 2.9E-20 T 25-04-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 A4U88_RS00990 c81bf553ac35e44f3de6b37788bbb7d8 87 Pfam PF02416 mttA/Hcf106 family 4 49 3.3E-13 T 25-04-2017 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 A4U88_RS17125 9193a57d2eca00d7abe5f81204e45ef3 151 SMART SM00450 32 129 3.0E-11 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS17125 9193a57d2eca00d7abe5f81204e45ef3 151 ProSitePatterns PS00380 Rhodanese signature 1. 57 68 - T 25-04-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 A4U88_RS17125 9193a57d2eca00d7abe5f81204e45ef3 151 Gene3D G3DSA:3.40.250.10 28 148 4.8E-20 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS17125 9193a57d2eca00d7abe5f81204e45ef3 151 Pfam PF00581 Rhodanese-like domain 40 125 1.1E-10 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS17125 9193a57d2eca00d7abe5f81204e45ef3 151 SUPERFAMILY SSF52821 11 130 4.71E-22 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS10435 ef7a42b9cd889da1f99e9d1d568ea5c7 99 Pfam PF11080 Protein of unknown function (DUF2622) 1 93 2.2E-35 T 25-04-2017 IPR022597 Endoribonuclease GhoS GO:0004521 A4U88_RS10435 ef7a42b9cd889da1f99e9d1d568ea5c7 99 ProDom PD066031 YDIZ CYTOPLASMIC STY1786 9 91 8.0E-14 T 25-04-2017 IPR020499 Uncharacterised protein family YdiZ A4U88_RS19490 e7c4ca8a4c9f739d5d5ae2273e84b109 346 Gene3D G3DSA:3.20.20.100 1 342 4.7E-107 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS19490 e7c4ca8a4c9f739d5d5ae2273e84b109 346 SUPERFAMILY SSF51430 1 344 6.29E-107 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS19490 e7c4ca8a4c9f739d5d5ae2273e84b109 346 Pfam PF00248 Aldo/keto reductase family 16 337 2.3E-72 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS18940 eeb3339973375dc8b6bbaefbb72208d0 95 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 93 4.2E-12 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS16085 7794a02bf7a9fbe60e07dfff4b49cf67 243 Gene3D G3DSA:3.40.50.300 8 223 1.6E-20 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16085 7794a02bf7a9fbe60e07dfff4b49cf67 243 SUPERFAMILY SSF52540 6 43 5.1E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16085 7794a02bf7a9fbe60e07dfff4b49cf67 243 SUPERFAMILY SSF52540 72 226 5.1E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 SUPERFAMILY SSF52540 4 242 1.05E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 Gene3D G3DSA:2.40.50.140 283 339 7.4E-14 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 Gene3D G3DSA:3.40.50.300 4 235 1.9E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 Gene3D G3DSA:2.40.50.100 341 354 2.4E-8 T 25-04-2017 A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 Gene3D G3DSA:2.40.50.100 240 282 2.4E-8 T 25-04-2017 A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 SUPERFAMILY SSF50331 237 354 2.04E-28 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 Pfam PF08402 TOBE domain 278 347 3.3E-7 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 Pfam PF00005 ABC transporter 21 162 1.4E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS00910 77f42fa01f6b89dbef416e487318db41 356 SMART SM00382 29 212 6.1E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 84 97 - T 25-04-2017 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 123 1.6E-30 T 25-04-2017 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 Gene3D G3DSA:1.20.1300.10 5 129 4.1E-42 T 25-04-2017 A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 PIRSF PIRSF000178 2 129 4.2E-32 T 25-04-2017 A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 SUPERFAMILY SSF81343 3 129 1.24E-34 T 25-04-2017 A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 9 33 - T 25-04-2017 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS05950 9f6b38014b8848c37c2f0fe0b15698b2 129 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 7 126 6.5E-40 T 25-04-2017 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00421 425 482 8.1E-23 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SUPERFAMILY SSF55785 255 378 4.99E-19 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Pfam PF13426 PAS domain 159 252 1.4E-5 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Pfam PF13426 PAS domain 278 379 2.3E-7 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SUPERFAMILY SSF46894 422 488 2.99E-20 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 428 442 1.8E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 442 458 1.8E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 458 470 1.8E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Pfam PF08448 PAS fold 22 136 5.3E-7 T 25-04-2017 IPR013656 PAS fold-4 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00086 340 380 5.4 T 25-04-2017 IPR001610 PAC motif A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00086 215 255 45.0 T 25-04-2017 IPR001610 PAC motif A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00086 93 137 100.0 T 25-04-2017 IPR001610 PAC motif A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Gene3D G3DSA:1.10.10.10 417 487 7.3E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SUPERFAMILY SSF55785 136 251 6.12E-14 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Gene3D G3DSA:3.30.450.20 134 174 1.7E-4 T 25-04-2017 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Gene3D G3DSA:3.30.450.20 14 133 1.2E-9 T 25-04-2017 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Gene3D G3DSA:3.30.450.20 175 263 3.0E-11 T 25-04-2017 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Gene3D G3DSA:3.30.450.20 264 378 9.7E-20 T 25-04-2017 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 140 262 1.3E-10 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 263 387 3.8E-13 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 Pfam PF00196 Bacterial regulatory proteins, luxR family 428 482 2.3E-17 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00091 142 209 0.001 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00091 267 334 9.3E-7 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SMART SM00091 13 78 8.6E-4 T 25-04-2017 IPR000014 PAS domain A4U88_RS17310 f915afe89d6c96979075ab733ff3e872 498 SUPERFAMILY SSF55785 14 125 7.57E-9 T 25-04-2017 IPR000014 PAS domain A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 PIRSF PIRSF000398 1 273 1.3E-61 T 25-04-2017 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 TIGRFAM TIGR00571 dam: DNA adenine methylase 3 267 1.3E-84 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 8 251 1.3E-63 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 Gene3D G3DSA:3.40.50.150 161 268 1.9E-48 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 Gene3D G3DSA:3.40.50.150 2 57 1.9E-48 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 Gene3D G3DSA:1.10.1020.10 58 155 4.9E-30 T 25-04-2017 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 176 188 1.5E-15 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 8 24 1.5E-15 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 48 61 1.5E-15 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 29 43 1.5E-15 T 25-04-2017 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 A4U88_RS15005 0787a83d279d5ebbb35a0e71af5e8c9d 273 SUPERFAMILY SSF53335 1 268 9.66E-69 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22000 c0d70c806f901edc959565b57f3ece7f 602 Pfam PF02254 TrkA-N domain 402 494 1.5E-7 T 25-04-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 A4U88_RS22000 c0d70c806f901edc959565b57f3ece7f 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 390 5.3E-38 T 25-04-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 A4U88_RS22000 c0d70c806f901edc959565b57f3ece7f 602 Gene3D G3DSA:3.40.50.720 397 495 7.1E-11 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22000 c0d70c806f901edc959565b57f3ece7f 602 SUPERFAMILY SSF51735 402 495 1.06E-10 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 SMART SM00847 385 476 9.6E-12 T 25-04-2017 IPR007502 Helicase-associated domain GO:0004386 A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 Pfam PF04408 Helicase associated domain (HA2) 386 444 3.0E-11 T 25-04-2017 IPR007502 Helicase-associated domain GO:0004386 A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 Gene3D G3DSA:3.40.50.300 1 157 2.4E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 PIRSF PIRSF005496 1 809 0.0 T 25-04-2017 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 SUPERFAMILY SSF52540 13 336 5.35E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 SMART SM00487 2 186 4.4E-17 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 Pfam PF08482 ATP-dependent helicase C-terminal 664 796 6.1E-54 T 25-04-2017 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 1 808 0.0 T 25-04-2017 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 Pfam PF00270 DEAD/DEAH box helicase 14 159 8.9E-10 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 Gene3D G3DSA:3.40.50.300 199 341 2.3E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 SMART SM00490 227 325 9.8E-16 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS20350 61950931d71cffcd5c875f7c4a2fe60b 809 Pfam PF00271 Helicase conserved C-terminal domain 202 324 2.3E-12 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS17850 5b439516aac3ca3b57587d317b8830c1 128 SUPERFAMILY SSF52833 10 123 1.02E-33 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17850 5b439516aac3ca3b57587d317b8830c1 128 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 10 123 3.6E-36 T 25-04-2017 IPR006504 Transcriptional regulator Spx/MgsR A4U88_RS17850 5b439516aac3ca3b57587d317b8830c1 128 Pfam PF03960 ArsC family 13 122 4.8E-16 T 25-04-2017 IPR006660 Arsenate reductase-like A4U88_RS17850 5b439516aac3ca3b57587d317b8830c1 128 Gene3D G3DSA:3.40.30.10 10 123 1.5E-44 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17480 39088dd41fc029de47d47bc162021a68 261 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 161 171 - T 25-04-2017 IPR024002 Formate/nitrite transporter, conserved site A4U88_RS17480 39088dd41fc029de47d47bc162021a68 261 Pfam PF01226 Formate/nitrite transporter 8 248 3.6E-74 T 25-04-2017 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 A4U88_RS17480 39088dd41fc029de47d47bc162021a68 261 Gene3D G3DSA:1.20.1080.10 24 252 1.8E-79 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS12930 a32fbca99b015cce6510399bafb4003d 253 Gene3D G3DSA:1.20.144.10 12 120 8.1E-26 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS12930 a32fbca99b015cce6510399bafb4003d 253 Gene3D G3DSA:1.20.144.10 156 232 8.1E-26 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS12930 a32fbca99b015cce6510399bafb4003d 253 Pfam PF01569 PAP2 superfamily 80 232 6.1E-30 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS12930 a32fbca99b015cce6510399bafb4003d 253 SMART SM00014 76 227 2.1E-32 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS12930 a32fbca99b015cce6510399bafb4003d 253 SUPERFAMILY SSF48317 145 234 1.44E-31 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS12930 a32fbca99b015cce6510399bafb4003d 253 SUPERFAMILY SSF48317 22 113 1.44E-31 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS12440 0a1d652f652329a637138695e9cae6c5 556 Pfam PF13320 Domain of unknown function (DUF4091) 434 506 4.7E-21 T 25-04-2017 IPR025150 Domain of unknown function DUF4091 A4U88_RS19880 29a5d1d1863ded40aded3bbf15995c09 140 PIRSF PIRSF020653 1 137 7.0E-56 T 25-04-2017 IPR009883 Toxin CptA A4U88_RS19880 29a5d1d1863ded40aded3bbf15995c09 140 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 2 130 2.1E-56 T 25-04-2017 IPR009883 Toxin CptA A4U88_RS19880 29a5d1d1863ded40aded3bbf15995c09 140 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 19 130 7.0E-28 T 25-04-2017 IPR009883 Toxin CptA A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 299 307 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 1.7E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 36 46 1.7E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 141 150 1.7E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 55 62 1.7E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00406 Cytochrome B5 reductase signature 91 105 7.5E-8 T 25-04-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00406 Cytochrome B5 reductase signature 116 135 7.5E-8 T 25-04-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 PRINTS PR00406 Cytochrome B5 reductase signature 212 220 7.5E-8 T 25-04-2017 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 Gene3D G3DSA:3.10.20.30 239 351 4.2E-31 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 Pfam PF00175 Oxidoreductase NAD-binding domain 118 226 1.3E-17 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 Pfam PF00970 Oxidoreductase FAD-binding domain 8 105 2.9E-13 T 25-04-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 268 341 2.8E-16 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 SUPERFAMILY SSF54292 234 349 4.98E-29 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 Gene3D G3DSA:2.40.30.10 3 95 2.9E-25 T 25-04-2017 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 351 5.2E-147 T 25-04-2017 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 SUPERFAMILY SSF63380 2 107 6.35E-25 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 Gene3D G3DSA:3.40.50.80 96 238 1.1E-39 T 25-04-2017 A4U88_RS15280 c433cafbf2e338d6a81c647a01424b86 352 SUPERFAMILY SSF52343 94 242 3.01E-35 T 25-04-2017 A4U88_RS07875 1f850db9320542e867610e081891e6be 269 SUPERFAMILY SSF56317 4 269 6.8E-67 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS07875 1f850db9320542e867610e081891e6be 269 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 144 164 - T 25-04-2017 IPR001110 Uncharacterised protein family UPF0012, conserved site A4U88_RS07875 1f850db9320542e867610e081891e6be 269 Pfam PF00795 Carbon-nitrogen hydrolase 6 248 5.6E-44 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS07875 1f850db9320542e867610e081891e6be 269 Gene3D G3DSA:3.60.110.10 2 269 3.7E-71 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS14835 3004fa0692e64d6f13cd20c2349e8de8 228 Pfam PF01144 Coenzyme A transferase 8 217 7.1E-69 T 25-04-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 A4U88_RS14835 3004fa0692e64d6f13cd20c2349e8de8 228 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 25-04-2017 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 A4U88_RS14835 3004fa0692e64d6f13cd20c2349e8de8 228 Gene3D G3DSA:3.40.1080.10 4 218 1.5E-87 T 25-04-2017 A4U88_RS14835 3004fa0692e64d6f13cd20c2349e8de8 228 SMART SM00882 6 219 2.6E-82 T 25-04-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 A4U88_RS14835 3004fa0692e64d6f13cd20c2349e8de8 228 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 218 8.9E-112 T 25-04-2017 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 A4U88_RS14835 3004fa0692e64d6f13cd20c2349e8de8 228 SUPERFAMILY SSF100950 2 223 2.41E-78 T 25-04-2017 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 Pfam PF00267 Gram-negative porin 28 360 1.1E-142 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 Gene3D G3DSA:2.40.160.10 23 360 1.1E-102 T 25-04-2017 IPR023614 Porin domain A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 4.0E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 315 332 4.0E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 4.0E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 233 245 4.0E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 4.0E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 239 256 2.7E-68 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 2.7E-68 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 271 290 2.7E-68 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 2.7E-68 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 2.7E-68 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 2.7E-68 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS13925 3fe415399c228c17e39a3e8d0d52f4f1 360 SUPERFAMILY SSF56935 23 360 2.47E-77 T 25-04-2017 A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 164 1.1E-20 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 Gene3D G3DSA:2.170.130.10 52 165 5.7E-30 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 52 707 1.1E-90 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 Gene3D G3DSA:2.40.170.20 166 707 9.1E-105 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 690 707 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 25-04-2017 IPR010916 TonB box, conserved site A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 SUPERFAMILY SSF56935 34 707 1.73E-116 T 25-04-2017 A4U88_RS20720 a12cb2c02ffd0721fc643531611149c8 707 Pfam PF00593 TonB dependent receptor 453 702 1.4E-32 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.876 T 25-04-2017 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 SMART SM00382 142 327 3.7E-4 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 SUPERFAMILY SSF47917 345 459 1.46E-55 T 25-04-2017 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 Gene3D G3DSA:1.10.1140.10 345 460 5.3E-57 T 25-04-2017 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 7.1E-263 T 25-04-2017 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 Gene3D G3DSA:3.40.50.300 77 343 6.6E-108 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 Gene3D G3DSA:2.40.10.170 2 75 3.0E-30 T 25-04-2017 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 SUPERFAMILY SSF52540 77 348 9.82E-90 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 25-04-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 7.8E-63 T 25-04-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 6.0E-20 T 25-04-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS24130 2c9d063d7b27a10925f939d76da7249d 460 SUPERFAMILY SSF50615 1 75 1.23E-24 T 25-04-2017 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 SUPERFAMILY SSF50151 1 52 7.06E-18 T 25-04-2017 IPR004341 CAT RNA-binding domain GO:0003723 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 Pfam PF00874 PRD domain 77 163 1.6E-21 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 Pfam PF00874 PRD domain 180 272 5.2E-20 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 SUPERFAMILY SSF63520 170 273 5.62E-28 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 ProSitePatterns PS00654 PRD domain signature. 98 110 - T 25-04-2017 IPR001550 Transcription antiterminator, conserved site GO:0003723|GO:0045893 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 SUPERFAMILY SSF63520 58 167 3.79E-28 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 SMART SM01061 1 59 6.1E-28 T 25-04-2017 IPR004341 CAT RNA-binding domain GO:0003723 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 Gene3D G3DSA:2.30.24.10 1 51 1.2E-24 T 25-04-2017 IPR004341 CAT RNA-binding domain GO:0003723 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 Pfam PF03123 CAT RNA binding domain 1 50 2.6E-23 T 25-04-2017 IPR004341 CAT RNA-binding domain GO:0003723 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 Gene3D G3DSA:1.10.1790.10 65 164 2.8E-27 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS04715 73a184ca1de34d7069f49ffcb51170b1 282 Gene3D G3DSA:1.10.1790.10 169 276 6.8E-33 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS11845 fb181b86f8ff67cdbe4ece5a630290e2 321 Pfam PF01368 DHH family 24 165 4.6E-15 T 25-04-2017 IPR001667 DDH domain A4U88_RS11845 fb181b86f8ff67cdbe4ece5a630290e2 321 SMART SM01131 200 316 1.0E-18 T 25-04-2017 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 A4U88_RS11845 fb181b86f8ff67cdbe4ece5a630290e2 321 SUPERFAMILY SSF64182 23 314 1.44E-56 T 25-04-2017 A4U88_RS11845 fb181b86f8ff67cdbe4ece5a630290e2 321 Gene3D G3DSA:3.90.1640.10 23 203 1.3E-47 T 25-04-2017 A4U88_RS11845 fb181b86f8ff67cdbe4ece5a630290e2 321 Pfam PF02833 DHHA2 domain 203 314 3.4E-13 T 25-04-2017 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 A4U88_RS07275 b01fd96d9f062a9cab528ff1f195194f 419 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 252 410 1.0E-40 T 25-04-2017 IPR031475 Putative nucleotide-binding C-terminal domain A4U88_RS07275 b01fd96d9f062a9cab528ff1f195194f 419 Pfam PF07005 Putative sugar-binding N-terminal domain 3 226 2.9E-70 T 25-04-2017 IPR010737 Putative sugar-binding, N-terminal domain A4U88_RS07275 b01fd96d9f062a9cab528ff1f195194f 419 SUPERFAMILY SSF142764 3 415 9.81E-128 T 25-04-2017 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 81 1.3E-4 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 Gene3D G3DSA:3.30.470.20 199 387 2.5E-65 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 SUPERFAMILY SSF56059 113 314 3.71E-57 T 25-04-2017 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 Gene3D G3DSA:3.30.1490.20 123 198 6.9E-28 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 391 52.042 T 25-04-2017 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 8.8E-191 T 25-04-2017 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 Gene3D G3DSA:3.40.50.20 5 120 2.2E-41 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 Pfam PF02222 ATP-grasp domain 123 295 1.2E-56 T 25-04-2017 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 SUPERFAMILY SSF51246 319 391 1.51E-17 T 25-04-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS13750 128f3237e52d2f62c887eb373391c627 392 SUPERFAMILY SSF52440 3 112 2.73E-36 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 5.0E-132 T 25-04-2017 A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 Gene3D G3DSA:3.40.50.880 34 301 3.9E-121 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 301 52.51 T 25-04-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 PIRSF PIRSF000450 1 308 1.2E-146 T 25-04-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.7E-132 T 25-04-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 2.8E-159 T 25-04-2017 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 A4U88_RS22105 29f674bc22f2e7c64866a6fe9508fa31 309 SUPERFAMILY SSF52317 18 297 1.59E-102 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 1.6E-19 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 Pfam PF00005 ABC transporter 26 184 2.2E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 Gene3D G3DSA:3.40.50.300 4 258 3.2E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 SUPERFAMILY SSF52540 6 255 2.95E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 SMART SM00382 34 234 2.7E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13965 2b47e045bce459198c51d1b36145690e 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 318 2.5E-26 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS01575 99a2d393d2021f28eabf3253a7d56851 130 PIRSF PIRSF000180 2 130 2.6E-56 T 25-04-2017 IPR003510 Fumarate reductase, subunit C GO:0016020 A4U88_RS01575 99a2d393d2021f28eabf3253a7d56851 130 Pfam PF02300 Fumarate reductase subunit C 3 128 5.5E-54 T 25-04-2017 IPR003510 Fumarate reductase, subunit C GO:0016020 A4U88_RS01575 99a2d393d2021f28eabf3253a7d56851 130 Gene3D G3DSA:1.20.1300.10 3 129 1.6E-55 T 25-04-2017 A4U88_RS01575 99a2d393d2021f28eabf3253a7d56851 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 28.237 T 25-04-2017 IPR003510 Fumarate reductase, subunit C GO:0016020 A4U88_RS01575 99a2d393d2021f28eabf3253a7d56851 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 8 112 3.0E-36 T 25-04-2017 IPR003510 Fumarate reductase, subunit C GO:0016020 A4U88_RS01575 99a2d393d2021f28eabf3253a7d56851 130 SUPERFAMILY SSF81343 2 129 2.35E-55 T 25-04-2017 A4U88_RS09825 fd4ed5146bfd4adef63b3ba4c1554d1f 113 Gene3D G3DSA:3.30.1660.10 43 113 5.7E-13 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS09825 fd4ed5146bfd4adef63b3ba4c1554d1f 113 Pfam PF07338 Protein of unknown function (DUF1471) 61 113 9.1E-12 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS09825 fd4ed5146bfd4adef63b3ba4c1554d1f 113 SUPERFAMILY SSF159871 31 113 5.1E-14 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 SUPERFAMILY SSF49354 17 142 1.6E-41 T 25-04-2017 IPR008962 PapD-like A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 21 142 4.3E-42 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 Gene3D G3DSA:2.60.40.360 21 142 2.7E-43 T 25-04-2017 IPR008962 PapD-like A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 PRINTS PR00969 Pili chaperone signature 124 139 8.7E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 PRINTS PR00969 Pili chaperone signature 98 115 8.7E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 PRINTS PR00969 Pili chaperone signature 70 91 8.7E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 PRINTS PR00969 Pili chaperone signature 21 30 8.7E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 PRINTS PR00969 Pili chaperone signature 159 174 8.7E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 Gene3D G3DSA:2.60.40.1070 147 225 2.8E-16 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 164 223 2.4E-11 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 97 114 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS08660 c7fd618e2583dbb2e2cf19ae1c7af485 231 SUPERFAMILY SSF49584 136 224 1.2E-16 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 Pfam PF00156 Phosphoribosyl transferase domain 285 394 3.4E-8 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 PIRSF PIRSF000485 1 483 1.8E-171 T 25-04-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 468 45.244 T 25-04-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 SUPERFAMILY SSF56235 2 259 1.37E-75 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 Pfam PF13522 Glutamine amidotransferase domain 64 210 5.5E-17 T 25-04-2017 A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 SUPERFAMILY SSF53271 252 485 3.15E-72 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 Gene3D G3DSA:3.40.50.2020 275 446 1.8E-47 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 Gene3D G3DSA:3.60.20.10 2 260 2.2E-65 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS17000 878d9a49f07a4679b2e250fe38e4a502 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 5.5E-163 T 25-04-2017 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 A4U88_RS05405 686956bf1b5edc72a0cf6278de11d418 228 Pfam PF00005 ABC transporter 27 174 6.4E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS05405 686956bf1b5edc72a0cf6278de11d418 228 Gene3D G3DSA:3.40.50.300 5 227 2.4E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05405 686956bf1b5edc72a0cf6278de11d418 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05405 686956bf1b5edc72a0cf6278de11d418 228 SUPERFAMILY SSF52540 6 227 5.58E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05405 686956bf1b5edc72a0cf6278de11d418 228 SMART SM00382 35 221 2.7E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13385 77ca25910f3966a1ea0e26c5cce19892 58 Pfam PF10753 Protein of unknown function (DUF2566) 5 58 6.3E-23 T 25-04-2017 IPR019689 Toxin GhoT/OrtT A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 Gene3D G3DSA:1.10.10.10 2 84 1.7E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 Gene3D G3DSA:3.40.190.10 179 259 7.0E-5 T 25-04-2017 A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 Gene3D G3DSA:3.40.190.10 93 178 6.8E-25 T 25-04-2017 A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 SUPERFAMILY SSF53850 91 294 8.32E-40 T 25-04-2017 A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 8.9E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 Pfam PF03466 LysR substrate binding domain 89 292 5.6E-40 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20880 08bb1428fd07aecaaabd4afba8da914a 298 SUPERFAMILY SSF46785 3 112 1.4E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17525 39b5965e2e65d23b567de4e4afcf3775 345 Pfam PF01032 FecCD transport family 35 341 3.1E-82 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS17525 39b5965e2e65d23b567de4e4afcf3775 345 SUPERFAMILY SSF81345 19 341 5.23E-72 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS17525 39b5965e2e65d23b567de4e4afcf3775 345 Gene3D G3DSA:1.10.3470.10 24 345 2.3E-89 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 Gene3D G3DSA:3.30.450.80 13 179 1.3E-10 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 Pfam PF03472 Autoinducer binding domain 25 161 9.3E-15 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 SMART SM00421 174 231 9.6E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 SUPERFAMILY SSF46894 163 237 2.96E-18 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 219 2.4E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 191 2.4E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 191 207 2.4E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 TIGRFAM TIGR03541 reg_near_HchA: LuxR family transcriptional regulatory, chaperone HchA-associated 7 237 2.5E-99 T 25-04-2017 IPR019941 Transcription regulator LuxR, chaperone HchA-associated A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 SUPERFAMILY SSF75516 15 168 4.18E-13 T 25-04-2017 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 231 8.1E-16 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15905 aaf95075485e49ec7ffe19fedb4dfd3a 242 Gene3D G3DSA:1.10.10.10 180 235 1.8E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17135 1fd7b5f187df9efb9be3b63a9aaf4639 298 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 62 286 1.5E-14 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS17135 1fd7b5f187df9efb9be3b63a9aaf4639 298 SUPERFAMILY SSF56219 49 296 2.22E-33 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS17135 1fd7b5f187df9efb9be3b63a9aaf4639 298 Gene3D G3DSA:3.60.10.10 59 229 1.2E-14 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 SUPERFAMILY SSF47413 1 59 7.31E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.7E-19 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 Gene3D G3DSA:1.10.260.40 2 53 2.9E-24 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 62.783 T 25-04-2017 IPR023588 Transcription regulator HTH, PurR GO:0006355 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 SUPERFAMILY SSF53822 60 337 3.14E-95 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 SMART SM00354 1 71 3.4E-37 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 Gene3D G3DSA:3.40.50.2300 176 308 5.1E-55 T 25-04-2017 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 Gene3D G3DSA:3.40.50.2300 54 175 4.5E-41 T 25-04-2017 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 1.6E-39 T 25-04-2017 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.2E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10770 a02d5ff4cd9fd7c0a2041007cb68b5c7 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.2E-6 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS15980 c21243aa00b0c4e8869bfd414baa1c9b 228 Gene3D G3DSA:2.60.120.330 62 202 4.4E-17 T 25-04-2017 IPR027443 Isopenicillin N synthase-like A4U88_RS15980 c21243aa00b0c4e8869bfd414baa1c9b 228 SUPERFAMILY SSF51197 52 205 2.17E-18 T 25-04-2017 A4U88_RS15980 c21243aa00b0c4e8869bfd414baa1c9b 228 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 40 199 7.3E-42 T 25-04-2017 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 SUPERFAMILY SSF46689 221 268 3.27E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 SUPERFAMILY SSF51182 24 99 1.41E-7 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 SUPERFAMILY SSF46689 166 216 4.93E-5 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 Gene3D G3DSA:1.10.10.60 222 267 2.1E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 218 261 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 Gene3D G3DSA:2.60.120.10 24 101 1.1E-7 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 265 5.3E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 234 249 5.3E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 Pfam PF12833 Helix-turn-helix domain 191 266 8.0E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 Gene3D G3DSA:1.10.10.60 163 220 2.7E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09830 de0ae3665d1f3f2676bd74f99813d73c 272 SMART SM00342 183 265 2.6E-17 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 SMART SM01134 72 233 3.2E-71 T 25-04-2017 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 Gene3D G3DSA:1.10.10.10 2 58 7.9E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 SUPERFAMILY SSF100950 74 233 6.98E-30 T 25-04-2017 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 6.8E-24 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 Gene3D G3DSA:3.30.750.70 74 153 9.5E-19 T 25-04-2017 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.2E-12 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.2E-12 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 SUPERFAMILY SSF46785 3 73 4.05E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 SMART SM00420 6 58 4.9E-26 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 Pfam PF00455 DeoR C terminal sensor domain 76 232 3.5E-54 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS22820 72969af741b3cd2f2c278b12762fc0f0 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS09090 e5838d23e2a9ba866343e1c52ba8b4c5 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 5 297 3.6E-105 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS09090 e5838d23e2a9ba866343e1c52ba8b4c5 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 5 306 1.0E-145 T 25-04-2017 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 A4U88_RS09090 e5838d23e2a9ba866343e1c52ba8b4c5 306 PIRSF PIRSF026649 2 306 1.5E-100 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS09090 e5838d23e2a9ba866343e1c52ba8b4c5 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 52.997 T 25-04-2017 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.2E-66 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 1.1E-42 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 1.1E-42 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 1.1E-42 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 1.1E-42 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 1.1E-42 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 25-04-2017 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.883 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 SUPERFAMILY SSF53098 3 156 8.34E-55 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 158 2.3E-81 T 25-04-2017 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 A4U88_RS13595 920114ee0bb51936e85282b4e7b19110 173 Gene3D G3DSA:3.30.420.10 3 156 6.0E-67 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 SUPERFAMILY SSF54637 532 682 1.1E-34 T 25-04-2017 IPR029069 HotDog domain A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 Pfam PF01575 MaoC like domain 544 646 7.2E-29 T 25-04-2017 IPR002539 MaoC-like domain A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 Gene3D G3DSA:3.10.129.10 529 683 3.3E-42 T 25-04-2017 IPR029069 HotDog domain A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 Gene3D G3DSA:3.40.309.10 266 458 4.0E-35 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 Pfam PF00171 Aldehyde dehydrogenase family 23 502 4.3E-61 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 4 681 0.0 T 25-04-2017 IPR011966 Phenylacetic acid degradation protein PaaN A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 Gene3D G3DSA:3.40.605.10 3 265 3.0E-35 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS15255 752851f35bf78f97f1f4eca4fcda7a10 688 SUPERFAMILY SSF53720 4 507 9.29E-80 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS20425 1dfe42d68a7a197b3c45fc5457104e28 307 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS20425 1dfe42d68a7a197b3c45fc5457104e28 307 SMART SM00382 30 213 1.1E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS20425 1dfe42d68a7a197b3c45fc5457104e28 307 SUPERFAMILY SSF52540 2 232 4.57E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20425 1dfe42d68a7a197b3c45fc5457104e28 307 Gene3D G3DSA:3.40.50.300 2 229 6.9E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20425 1dfe42d68a7a197b3c45fc5457104e28 307 Pfam PF00005 ABC transporter 21 165 2.9E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS18135 e205eb6bbed391abce4fe8c7dd41ecf2 301 Pfam PF00781 Diacylglycerol kinase catalytic domain 9 131 3.5E-30 T 25-04-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 A4U88_RS18135 e205eb6bbed391abce4fe8c7dd41ecf2 301 SUPERFAMILY SSF111331 8 297 1.09E-69 T 25-04-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain A4U88_RS18135 e205eb6bbed391abce4fe8c7dd41ecf2 301 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 9 300 1.5E-136 T 25-04-2017 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 A4U88_RS18135 e205eb6bbed391abce4fe8c7dd41ecf2 301 SMART SM00046 8 131 2.3E-23 T 25-04-2017 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 A4U88_RS18135 e205eb6bbed391abce4fe8c7dd41ecf2 301 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 6 301 48.245 T 25-04-2017 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 A4U88_RS18135 e205eb6bbed391abce4fe8c7dd41ecf2 301 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 10 295 7.6E-91 T 25-04-2017 IPR005218 Diacylglycerol/lipid kinase A4U88_RS04915 51010739c8d9ec7274ed2cdf4b9ec450 204 Gene3D G3DSA:1.20.120.80 24 202 1.3E-52 T 25-04-2017 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04915 51010739c8d9ec7274ed2cdf4b9ec450 204 Pfam PF00510 Cytochrome c oxidase subunit III 17 202 3.3E-16 T 25-04-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04915 51010739c8d9ec7274ed2cdf4b9ec450 204 SUPERFAMILY SSF81452 12 202 2.22E-60 T 25-04-2017 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04915 51010739c8d9ec7274ed2cdf4b9ec450 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 1.4E-88 T 25-04-2017 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 A4U88_RS12755 f0ca4abb8538be45642dfdb63d4514d5 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 1.5E-23 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12755 f0ca4abb8538be45642dfdb63d4514d5 296 SUPERFAMILY SSF161098 90 277 4.58E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12755 f0ca4abb8538be45642dfdb63d4514d5 296 Gene3D G3DSA:1.10.3720.10 87 292 1.2E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12755 f0ca4abb8538be45642dfdb63d4514d5 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 2.3E-9 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS05480 497039840316e1b4f0defc7f98d9b7b1 145 Gene3D G3DSA:3.10.450.50 32 127 2.1E-13 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS05480 497039840316e1b4f0defc7f98d9b7b1 145 SUPERFAMILY SSF54427 10 125 6.1E-14 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS22035 6f9223c87927e1acd7b3e6e5f3d0de53 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 258 8.4E-13 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22035 6f9223c87927e1acd7b3e6e5f3d0de53 261 SUPERFAMILY SSF161098 6 258 1.57E-42 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22035 6f9223c87927e1acd7b3e6e5f3d0de53 261 Gene3D G3DSA:1.10.3720.10 10 259 3.0E-40 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 Pfam PF08544 GHMP kinases C terminal 197 258 7.5E-6 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 PIRSF PIRSF010376 1 279 7.5E-84 T 25-04-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 276 2.7E-102 T 25-04-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 SUPERFAMILY SSF55060 161 277 3.12E-36 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 1 271 31.423 T 25-04-2017 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 SUPERFAMILY SSF54211 4 158 1.75E-47 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 Gene3D G3DSA:3.30.70.890 162 277 3.8E-43 T 25-04-2017 IPR013750 GHMP kinase, C-terminal domain A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 Pfam PF00288 GHMP kinases N terminal domain 87 144 6.7E-11 T 25-04-2017 IPR006204 GHMP kinase N-terminal domain GO:0005524 A4U88_RS09695 7c257a9a9a5318dbe42e4f5aa8676a09 284 Gene3D G3DSA:3.30.230.10 3 158 1.2E-52 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS04810 b18bfa80869ea495df18be2fbe331643 186 Pfam PF11622 Protein of unknown function (DUF3251) 20 183 9.4E-59 T 25-04-2017 IPR021658 Domain of unknown function DUF3251 A4U88_RS04810 b18bfa80869ea495df18be2fbe331643 186 Gene3D G3DSA:2.60.40.1620 43 175 7.0E-50 T 25-04-2017 IPR021658 Domain of unknown function DUF3251 A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 SMART SM00257 98 143 9.5E-5 T 25-04-2017 IPR018392 LysM domain A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 Gene3D G3DSA:3.10.350.10 98 140 3.0E-5 T 25-04-2017 IPR018392 LysM domain A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 Pfam PF04225 Opacity-associated protein A LysM-like domain 97 161 1.9E-5 T 25-04-2017 IPR007340 Opacity-associated protein A A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 Pfam PF01551 Peptidase family M23 313 407 3.1E-34 T 25-04-2017 IPR016047 Peptidase M23 A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 SUPERFAMILY SSF51261 166 408 1.36E-70 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 Gene3D G3DSA:2.70.70.10 267 409 3.5E-50 T 25-04-2017 A4U88_RS13565 ff9633ca3f75cbc4726e91f0b93dc903 440 Pfam PF08525 Opacity-associated protein A N-terminal motif 12 39 7.2E-9 T 25-04-2017 IPR013731 Opacity-associated protein A, N-terminal A4U88_RS17905 a5f4d658669df801fab4909f6bc708bf 154 Pfam PF00578 AhpC/TSA family 7 134 1.1E-38 T 25-04-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 A4U88_RS17905 a5f4d658669df801fab4909f6bc708bf 154 PIRSF PIRSF000239 1 153 1.8E-17 T 25-04-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 A4U88_RS17905 a5f4d658669df801fab4909f6bc708bf 154 SUPERFAMILY SSF52833 3 153 2.21E-49 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17905 a5f4d658669df801fab4909f6bc708bf 154 Gene3D G3DSA:3.40.30.10 3 154 7.7E-51 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 5.1E-6 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 5.1E-6 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 5.1E-6 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 56.359 T 25-04-2017 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.4E-6 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 1.4E-6 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.4E-6 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Gene3D G3DSA:3.30.300.10 401 525 1.5E-53 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 SUPERFAMILY SSF54810 405 525 2.09E-51 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Pfam PF00117 Glutamine amidotransferase class-I 12 200 4.1E-40 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Pfam PF02540 NAD synthase 216 281 1.1E-6 T 25-04-2017 IPR022310 NAD/GMP synthase A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Gene3D G3DSA:3.40.50.620 224 399 1.6E-57 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 SUPERFAMILY SSF52402 197 420 5.51E-58 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Gene3D G3DSA:3.40.50.880 4 223 3.6E-60 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 525 1.2E-155 T 25-04-2017 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 Pfam PF00958 GMP synthase C terminal domain 433 524 8.1E-44 T 25-04-2017 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 SUPERFAMILY SSF52317 4 204 6.42E-57 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 1.2E-7 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.2E-7 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.2E-7 T 25-04-2017 A4U88_RS18315 963650973ec2c0aaabf9b92f4c4a85a0 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 4.0E-84 T 25-04-2017 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 A4U88_RS21300 27c638786f75264027630cec01df9b8c 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 1.5E-18 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS21300 27c638786f75264027630cec01df9b8c 213 Gene3D G3DSA:3.40.30.10 7 101 7.0E-30 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21300 27c638786f75264027630cec01df9b8c 213 SUPERFAMILY SSF52833 11 110 7.75E-23 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21300 27c638786f75264027630cec01df9b8c 213 Gene3D G3DSA:1.20.1050.10 102 208 2.4E-16 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21300 27c638786f75264027630cec01df9b8c 213 SUPERFAMILY SSF47616 82 208 1.15E-26 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21300 27c638786f75264027630cec01df9b8c 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 101 194 6.3E-12 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.1E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 5.1E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 5.1E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 82 2.9E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 Gene3D G3DSA:1.10.10.10 18 100 1.0E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 Pfam PF03466 LysR substrate binding domain 130 310 4.3E-17 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 Gene3D G3DSA:3.40.190.10 105 187 1.9E-18 T 25-04-2017 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 Gene3D G3DSA:3.40.190.10 287 311 1.9E-18 T 25-04-2017 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 SUPERFAMILY SSF53850 105 310 1.09E-35 T 25-04-2017 A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 SUPERFAMILY SSF46785 19 98 6.8E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03285 6fd0ddeae96c6a4214e19ad4cd93bba3 315 Gene3D G3DSA:3.40.190.10 188 278 1.8E-13 T 25-04-2017 A4U88_RS09405 757c676e556eb813b6eea75eb3089b1f 141 SUPERFAMILY SSF57716 99 137 7.27E-7 T 25-04-2017 A4U88_RS09405 757c676e556eb813b6eea75eb3089b1f 141 SUPERFAMILY SSF109635 4 98 3.27E-23 T 25-04-2017 A4U88_RS09405 757c676e556eb813b6eea75eb3089b1f 141 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 97 131 6.0E-8 T 25-04-2017 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 A4U88_RS09405 757c676e556eb813b6eea75eb3089b1f 141 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 21 128 6.6E-36 T 25-04-2017 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 A4U88_RS14330 d2a44eed562370b55b15898f54059eb4 199 Pfam PF02525 Flavodoxin-like fold 2 196 3.8E-39 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS14330 d2a44eed562370b55b15898f54059eb4 199 SUPERFAMILY SSF52218 1 198 1.38E-49 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS14330 d2a44eed562370b55b15898f54059eb4 199 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 198 27.097 T 25-04-2017 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 A4U88_RS14330 d2a44eed562370b55b15898f54059eb4 199 Gene3D G3DSA:3.40.50.360 1 198 6.3E-55 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS18820 8793c081904eafa31124dcbbffe92592 244 SUPERFAMILY SSF53335 5 234 4.69E-44 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS18820 8793c081904eafa31124dcbbffe92592 244 Gene3D G3DSA:3.40.50.150 35 219 1.1E-35 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS18820 8793c081904eafa31124dcbbffe92592 244 Pfam PF08241 Methyltransferase domain 47 141 1.8E-22 T 25-04-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 2.7E-101 T 25-04-2017 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 25-04-2017 IPR014762 DNA mismatch repair, conserved site A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 SUPERFAMILY SSF118116 445 625 7.06E-44 T 25-04-2017 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 Pfam PF08676 MutL C terminal dimerisation domain 447 574 1.6E-25 T 25-04-2017 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 624 25.868 T 25-04-2017 IPR020667 DNA mismatch repair protein, MutL GO:0006298 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 SUPERFAMILY SSF54211 191 330 6.45E-37 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 Gene3D G3DSA:3.30.565.10 2 205 1.5E-77 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 122 4.0E-12 T 25-04-2017 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 SUPERFAMILY SSF55874 1 203 1.11E-56 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 SMART SM00853 450 585 4.9E-16 T 25-04-2017 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 214 329 9.0E-39 T 25-04-2017 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 SMART SM01340 212 330 8.1E-57 T 25-04-2017 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 A4U88_RS01650 3830d252106b67e5220f998fa86a8fb7 627 Gene3D G3DSA:3.30.230.10 218 329 1.3E-38 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS17275 aebfe87639b04ff58e868f7f91347bc2 210 SMART SM00382 26 204 5.8E-4 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS17275 aebfe87639b04ff58e868f7f91347bc2 210 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS17275 aebfe87639b04ff58e868f7f91347bc2 210 Pfam PF00005 ABC transporter 18 157 1.1E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS17275 aebfe87639b04ff58e868f7f91347bc2 210 SUPERFAMILY SSF52540 2 188 1.68E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17275 aebfe87639b04ff58e868f7f91347bc2 210 Gene3D G3DSA:3.40.50.300 1 188 1.8E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17275 aebfe87639b04ff58e868f7f91347bc2 210 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 192 9.6E-81 T 25-04-2017 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 A4U88_RS10875 b94c9ae3552013feeec21024be748198 100 SUPERFAMILY SSF141488 24 98 2.62E-19 T 25-04-2017 IPR018660 C-type lysozyme, inhibitor A4U88_RS10875 b94c9ae3552013feeec21024be748198 100 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 29 91 4.3E-13 T 25-04-2017 IPR018660 C-type lysozyme, inhibitor A4U88_RS13845 d6f6bcb1c03572c3aeeaa7592f859583 453 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS13845 d6f6bcb1c03572c3aeeaa7592f859583 453 Pfam PF00324 Amino acid permease 18 449 2.2E-119 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS13845 d6f6bcb1c03572c3aeeaa7592f859583 453 PIRSF PIRSF006060 1 451 3.9E-75 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 SUPERFAMILY SSF82051 2 157 3.92E-57 T 25-04-2017 IPR006169 GTP1/OBG domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 Pfam PF01018 GTP1/OBG 3 156 6.2E-61 T 25-04-2017 IPR006169 GTP1/OBG domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.279 T 25-04-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 Gene3D G3DSA:3.40.50.300 160 346 1.4E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 SUPERFAMILY SSF52540 152 336 4.2E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 Gene3D G3DSA:2.70.210.12 2 156 5.1E-61 T 25-04-2017 IPR006169 GTP1/OBG domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 1.3E-148 T 25-04-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 25-04-2017 IPR006074 GTP1/OBG, conserved site GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 PIRSF PIRSF002401 1 375 7.7E-142 T 25-04-2017 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.2E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.2E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.2E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.2E-34 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS01890 33b9cf771cf20a5773846b3415cebdec 390 Pfam PF01926 50S ribosome-binding GTPase 162 284 2.4E-24 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS09225 e0a66a33a858cbdfbef259d5e9a40414 341 Pfam PF02618 YceG-like family 45 329 9.1E-82 T 25-04-2017 IPR003770 Uncharacterised protein family UPF0755, YceG-like A4U88_RS09225 e0a66a33a858cbdfbef259d5e9a40414 341 Gene3D G3DSA:3.30.160.60 304 340 3.5E-19 T 25-04-2017 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 A4U88_RS09225 e0a66a33a858cbdfbef259d5e9a40414 341 Gene3D G3DSA:3.30.160.60 72 110 5.4E-24 T 25-04-2017 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 A4U88_RS09225 e0a66a33a858cbdfbef259d5e9a40414 341 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 1 338 1.3E-119 T 25-04-2017 IPR003770 Uncharacterised protein family UPF0755, YceG-like A4U88_RS24065 ba1fd0861227aefcbcb95bd7eebf46ff 487 SMART SM00327 323 487 2.1E-7 T 25-04-2017 IPR002035 von Willebrand factor, type A A4U88_RS24065 ba1fd0861227aefcbcb95bd7eebf46ff 487 SUPERFAMILY SSF53300 322 463 1.61E-17 T 25-04-2017 IPR002035 von Willebrand factor, type A A4U88_RS24065 ba1fd0861227aefcbcb95bd7eebf46ff 487 Hamap MF_01626 Protein ViaA [viaA]. 1 487 55.375 T 25-04-2017 IPR023481 Uncharacterised protein family ViaA A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 5.1E-5 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 5.1E-5 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 5.1E-5 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 SUPERFAMILY SSF46955 6 124 1.58E-23 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 ProSitePatterns PS00552 MerR-type HTH domain signature. 8 30 - T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 SMART SM00422 5 73 2.8E-12 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 Gene3D G3DSA:1.10.1660.10 3 59 3.4E-17 T 25-04-2017 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 Gene3D G3DSA:1.10.1660.10 60 127 3.0E-10 T 25-04-2017 A4U88_RS11170 6d683526d347241d5d028c2204c089dc 130 Pfam PF13411 MerR HTH family regulatory protein 7 72 1.2E-11 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 6.0E-11 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 6.0E-11 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 6.0E-11 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 Gene3D G3DSA:2.40.100.10 27 188 7.0E-55 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 25-04-2017 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 SUPERFAMILY SSF50891 26 188 2.48E-58 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS22560 1276a8379bb322fdfb151753ec389537 189 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 187 1.3E-48 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS18815 7ad570787d47ddb3efffcb8ecb9e2e33 150 Pfam PF00583 Acetyltransferase (GNAT) family 55 129 1.1E-8 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS18815 7ad570787d47ddb3efffcb8ecb9e2e33 150 SUPERFAMILY SSF55729 8 139 1.37E-18 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18815 7ad570787d47ddb3efffcb8ecb9e2e33 150 Gene3D G3DSA:3.40.630.30 10 130 2.1E-17 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06410 86dbf4095c377807881219f9a46bd969 206 SUPERFAMILY SSF109604 2 151 3.9E-31 T 25-04-2017 A4U88_RS06410 86dbf4095c377807881219f9a46bd969 206 SMART SM00471 25 135 5.7E-5 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS06410 86dbf4095c377807881219f9a46bd969 206 Pfam PF13328 HD domain 7 128 2.9E-15 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS21220 7a99181ba6b88733ef77653b01ec84df 233 PIRSF PIRSF006232 1 230 6.0E-30 T 25-04-2017 IPR012093 Pirin A4U88_RS21220 7a99181ba6b88733ef77653b01ec84df 233 Gene3D G3DSA:2.60.120.10 4 231 9.4E-34 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS21220 7a99181ba6b88733ef77653b01ec84df 233 SUPERFAMILY SSF51182 1 231 5.07E-45 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS21220 7a99181ba6b88733ef77653b01ec84df 233 Pfam PF02678 Pirin 5 119 3.4E-21 T 25-04-2017 IPR003829 Pirin, N-terminal domain A4U88_RS13070 06d9d287687b49269d1fd8f82d7dd9fe 142 SUPERFAMILY SSF54637 7 131 3.2E-39 T 25-04-2017 IPR029069 HotDog domain A4U88_RS13070 06d9d287687b49269d1fd8f82d7dd9fe 142 Gene3D G3DSA:3.10.129.10 3 131 3.6E-43 T 25-04-2017 IPR029069 HotDog domain A4U88_RS13070 06d9d287687b49269d1fd8f82d7dd9fe 142 Pfam PF03061 Thioesterase superfamily 26 98 3.1E-19 T 25-04-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 A4U88_RS22275 e48c0c4579ecb6173da341e62b7e0a1a 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.746 T 25-04-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22275 e48c0c4579ecb6173da341e62b7e0a1a 130 Gene3D G3DSA:3.30.1490.10 74 129 1.4E-28 T 25-04-2017 A4U88_RS22275 e48c0c4579ecb6173da341e62b7e0a1a 130 Gene3D G3DSA:3.30.1370.30 2 72 5.2E-27 T 25-04-2017 A4U88_RS22275 e48c0c4579ecb6173da341e62b7e0a1a 130 SUPERFAMILY SSF56047 5 129 2.35E-46 T 25-04-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22275 e48c0c4579ecb6173da341e62b7e0a1a 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 25-04-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22275 e48c0c4579ecb6173da341e62b7e0a1a 130 Pfam PF00410 Ribosomal protein S8 5 129 2.1E-48 T 25-04-2017 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS08070 af6506790703fe84232c2a063c18308b 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 315 1.5E-23 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08070 af6506790703fe84232c2a063c18308b 320 Gene3D G3DSA:1.10.3720.10 31 309 2.6E-48 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08070 af6506790703fe84232c2a063c18308b 320 SUPERFAMILY SSF161098 32 311 3.55E-55 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 SMART SM00829 20 333 9.9E-57 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 Gene3D G3DSA:3.90.180.10 10 154 1.3E-50 T 25-04-2017 IPR011032 GroES-like A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 SUPERFAMILY SSF51735 121 297 3.48E-52 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 11 334 6.7E-153 T 25-04-2017 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 Pfam PF00107 Zinc-binding dehydrogenase 161 279 4.4E-27 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 38 115 4.0E-11 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 Gene3D G3DSA:3.40.50.720 155 272 8.1E-29 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15200 05ee32a5a9d3ba0d4d3bf85a4cbeb50c 335 SUPERFAMILY SSF50129 11 150 3.04E-42 T 25-04-2017 IPR011032 GroES-like A4U88_RS03675 a80b7b58ba4b28315482b9837a7a93a1 332 Pfam PF01551 Peptidase family M23 232 325 5.2E-32 T 25-04-2017 IPR016047 Peptidase M23 A4U88_RS03675 a80b7b58ba4b28315482b9837a7a93a1 332 SUPERFAMILY SSF51261 77 329 2.2E-51 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS03675 a80b7b58ba4b28315482b9837a7a93a1 332 Gene3D G3DSA:3.10.350.10 75 119 2.3E-11 T 25-04-2017 IPR018392 LysM domain A4U88_RS03675 a80b7b58ba4b28315482b9837a7a93a1 332 Gene3D G3DSA:2.70.70.10 195 330 4.7E-42 T 25-04-2017 A4U88_RS03675 a80b7b58ba4b28315482b9837a7a93a1 332 SMART SM00257 76 120 1.9E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS03675 a80b7b58ba4b28315482b9837a7a93a1 332 Pfam PF01476 LysM domain 77 118 6.4E-9 T 25-04-2017 IPR018392 LysM domain A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 Pfam PF00664 ABC transporter transmembrane region 27 295 1.5E-39 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 Pfam PF00005 ABC transporter 357 505 2.6E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 SMART SM00382 366 557 1.6E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 SUPERFAMILY SSF90123 9 323 3.53E-67 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 Gene3D G3DSA:3.40.50.300 341 571 1.8E-72 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 SUPERFAMILY SSF52540 336 576 1.19E-77 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05015 e4f74c1c7be5994b0368130686490368 592 Gene3D G3DSA:1.20.1560.10 12 324 1.9E-70 T 25-04-2017 A4U88_RS19810 5c81dbb1263788956771931399d21b08 195 Pfam PF12318 Membrane bound FAD containing D-sorbitol dehydrogenase 7 169 3.9E-42 T 25-04-2017 IPR024651 FAD-containing D-sorbitol dehydrogenase small subunit A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 9.5E-216 T 25-04-2017 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 SUPERFAMILY SSF53383 2 375 9.11E-103 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 371 7.8E-88 T 25-04-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 Gene3D G3DSA:3.90.1150.10 251 375 9.8E-25 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 Gene3D G3DSA:3.40.640.10 1 248 2.0E-79 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 PIRSF PIRSF000390 1 376 5.1E-119 T 25-04-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase A4U88_RS00580 be068e90e3555cdc094aa33eda7ce1e5 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 80.337 T 25-04-2017 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 SUPERFAMILY SSF46689 565 641 7.17E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 SMART SM00091 213 280 6.9E-7 T 25-04-2017 IPR000014 PAS domain A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 SUPERFAMILY SSF55785 217 311 1.73E-8 T 25-04-2017 IPR000014 PAS domain A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 SUPERFAMILY SSF52540 343 576 1.19E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Gene3D G3DSA:3.30.450.20 213 313 1.0E-10 T 25-04-2017 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Gene3D G3DSA:1.10.10.60 580 641 2.6E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Pfam PF00989 PAS fold 215 314 1.6E-10 T 25-04-2017 IPR013767 PAS fold GO:0006355 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Gene3D G3DSA:3.40.50.300 334 506 2.6E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Pfam PF00158 Sigma-54 interaction domain 341 501 6.3E-35 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Pfam PF02954 Bacterial regulatory protein, Fis family 598 638 1.4E-11 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 621 641 5.1E-6 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 604 621 5.1E-6 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 Gene3D G3DSA:1.10.8.60 507 579 4.1E-16 T 25-04-2017 A4U88_RS20915 0e21e812d05d4f8019fbb29ed5baaeb5 649 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 361 374 - T 25-04-2017 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 SUPERFAMILY SSF54211 3 131 9.1E-43 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 1.5E-27 T 25-04-2017 IPR001498 Impact, N-terminal A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 Gene3D G3DSA:3.30.230.30 6 132 7.2E-44 T 25-04-2017 IPR001498 Impact, N-terminal A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 Pfam PF09186 Domain of unknown function (DUF1949) 141 196 2.9E-17 T 25-04-2017 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 Gene3D G3DSA:3.30.70.240 137 204 4.3E-26 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 25-04-2017 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 SUPERFAMILY SSF54980 138 203 1.04E-16 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS01055 d2b31cbdd3bdc90e0c281a9e88a5d4e0 204 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 2 200 5.6E-73 T 25-04-2017 IPR015796 Impact family, bacterial/archaeal A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 SUPERFAMILY SSF50331 241 369 8.02E-24 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 Pfam PF00005 ABC transporter 20 161 8.7E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 SUPERFAMILY SSF52540 4 248 5.85E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 Gene3D G3DSA:2.40.50.100 244 292 3.0E-7 T 25-04-2017 A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 Gene3D G3DSA:2.40.50.100 355 369 3.0E-7 T 25-04-2017 A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 SMART SM00382 29 216 1.3E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 Gene3D G3DSA:2.40.50.140 293 354 6.2E-8 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 Pfam PF08402 TOBE domain 288 361 1.9E-8 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 Gene3D G3DSA:3.40.50.300 4 241 2.1E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12460 91d56b43807b2fc630f3d9b6642b0ebb 370 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05530 bf3d0674f5f90055b3989206b31ccc2d 295 Gene3D G3DSA:1.10.3720.10 49 274 3.4E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05530 bf3d0674f5f90055b3989206b31ccc2d 295 SUPERFAMILY SSF161098 53 259 4.32E-35 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05530 bf3d0674f5f90055b3989206b31ccc2d 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 271 2.5E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00375 be06d436106c0b1b0fb3681525118cd4 199 SMART SM00471 27 136 4.4E-8 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS00375 be06d436106c0b1b0fb3681525118cd4 199 Pfam PF13328 HD domain 9 131 1.7E-18 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS00375 be06d436106c0b1b0fb3681525118cd4 199 SUPERFAMILY SSF109604 5 152 5.02E-36 T 25-04-2017 A4U88_RS07975 d4f49b19c608dfbda0d05c81463714c8 462 SUPERFAMILY SSF54534 241 437 3.34E-17 T 25-04-2017 A4U88_RS07975 d4f49b19c608dfbda0d05c81463714c8 462 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 355 436 3.3E-6 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS07975 d4f49b19c608dfbda0d05c81463714c8 462 Gene3D G3DSA:3.10.50.40 324 441 1.1E-19 T 25-04-2017 A4U88_RS07975 d4f49b19c608dfbda0d05c81463714c8 462 Gene3D G3DSA:1.10.287.460 231 323 3.3E-21 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS07975 d4f49b19c608dfbda0d05c81463714c8 462 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 233 345 1.2E-13 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 Gene3D G3DSA:3.30.70.100 1008 1092 7.3E-23 T 25-04-2017 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 967 1001 - T 25-04-2017 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 SUPERFAMILY SSF82861 853 936 1.31E-6 T 25-04-2017 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 515 834 1.6E-97 T 25-04-2017 IPR025692 Mechanosensitive ion channel inner membrane domain 1 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 Pfam PF00924 Mechanosensitive ion channel 895 1094 4.8E-58 T 25-04-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 Gene3D G3DSA:2.30.30.60 953 1002 4.2E-17 T 25-04-2017 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 Pfam PF12795 Mechanosensitive ion channel porin domain 57 295 3.8E-58 T 25-04-2017 IPR024393 Mechanosensitive ion channel MscS, porin domain A4U88_RS05145 c19263109219f506496100a315a66c79 1128 SUPERFAMILY SSF82689 1005 1105 1.16E-26 T 25-04-2017 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 A4U88_RS05145 c19263109219f506496100a315a66c79 1128 SUPERFAMILY SSF50182 938 1003 2.26E-16 T 25-04-2017 IPR010920 LSM domain A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 SUPERFAMILY SSF51735 4 162 9.29E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 100 3.8E-22 T 25-04-2017 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 247 - T 25-04-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 PIRSF PIRSF000193 3 271 6.3E-75 T 25-04-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 7.3E-75 T 25-04-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 269 9.3E-30 T 25-04-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 Gene3D G3DSA:1.10.3730.10 164 269 2.8E-30 T 25-04-2017 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 SUPERFAMILY SSF48179 163 271 3.23E-29 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 269 25.046 T 25-04-2017 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 A4U88_RS20575 622009d627a7bc0e8a8b32b8a794f1a7 273 Gene3D G3DSA:3.40.50.720 2 161 5.4E-49 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 1.1E-15 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 Gene3D G3DSA:3.40.50.1360 77 209 1.5E-10 T 25-04-2017 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 SUPERFAMILY SSF46785 5 60 1.01E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 SMART SM01134 71 230 2.1E-59 T 25-04-2017 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 SMART SM00420 6 58 6.5E-14 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.4E-8 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.4E-8 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 SUPERFAMILY SSF100950 75 233 4.5E-25 T 25-04-2017 A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 Pfam PF00455 DeoR C terminal sensor domain 76 229 1.0E-42 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS11630 ace85214cba8e6a080b609f3ee6cd4d5 249 Gene3D G3DSA:1.10.10.10 6 76 6.6E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07140 42218a5b654339545f193988630c6b01 319 SUPERFAMILY SSF52418 75 318 2.75E-47 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS07140 42218a5b654339545f193988630c6b01 319 SUPERFAMILY SSF47648 7 72 9.16E-15 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS07140 42218a5b654339545f193988630c6b01 319 Gene3D G3DSA:3.40.1030.10 79 318 6.0E-42 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS07140 42218a5b654339545f193988630c6b01 319 Gene3D G3DSA:1.20.970.10 7 69 1.9E-19 T 25-04-2017 A4U88_RS07140 42218a5b654339545f193988630c6b01 319 Pfam PF00591 Glycosyl transferase family, a/b domain 94 318 2.9E-8 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS07140 42218a5b654339545f193988630c6b01 319 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 68 1.3E-10 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS22460 cbb75e4617ddcb0bb734e2e6b6873f87 278 SUPERFAMILY SSF161098 78 260 3.01E-36 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22460 cbb75e4617ddcb0bb734e2e6b6873f87 278 Gene3D G3DSA:1.10.3720.10 74 272 2.0E-31 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22460 cbb75e4617ddcb0bb734e2e6b6873f87 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 268 2.7E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 Gene3D G3DSA:3.30.360.10 163 308 4.6E-49 T 25-04-2017 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 Gene3D G3DSA:3.40.50.720 1 162 3.6E-63 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 7.4E-17 T 25-04-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 25-04-2017 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 SUPERFAMILY SSF51735 2 180 3.47E-47 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 38.418 T 25-04-2017 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 4.1E-126 T 25-04-2017 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 8.3E-34 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 SUPERFAMILY SSF55347 154 308 4.02E-50 T 25-04-2017 A4U88_RS23490 2d41907266e3f80ebb74ce1af7d4c84e 334 SMART SM00859 3 146 7.2E-52 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 PRINTS PR00682 Isopenicillin N synthase signature 32 49 6.4E-12 T 25-04-2017 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 PRINTS PR00682 Isopenicillin N synthase signature 239 265 6.4E-12 T 25-04-2017 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 PRINTS PR00682 Isopenicillin N synthase signature 203 224 6.4E-12 T 25-04-2017 IPR002283 Isopenicillin N synthase GO:0005506|GO:0016491|GO:0055114 A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 SUPERFAMILY SSF51197 6 287 2.4E-80 T 25-04-2017 A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 10 133 4.6E-36 T 25-04-2017 IPR026992 Non-haem dioxygenase N-terminal domain A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 Gene3D G3DSA:2.60.120.330 8 290 2.0E-88 T 25-04-2017 IPR027443 Isopenicillin N synthase-like A4U88_RS07905 2fc33cb4ef67f4e5a1f0b6ecb96e7525 340 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 182 278 1.6E-18 T 25-04-2017 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 Gene3D G3DSA:3.20.20.70 11 357 1.1E-126 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 4.2E-189 T 25-04-2017 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 SUPERFAMILY SSF51569 4 357 2.93E-133 T 25-04-2017 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 2.3E-91 T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 PIRSF PIRSF001359 13 359 3.4E-103 T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 8.6E-116 T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS20165 738a9678aa7b23791690a361ab1a0e17 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS20135 3e201ed31b0560979ef51e46503787fe 325 Pfam PF08908 Domain of unknown function (DUF1852) 1 321 1.4E-184 T 25-04-2017 IPR015004 Protein of unknown function DUF1852 A4U88_RS20135 3e201ed31b0560979ef51e46503787fe 325 PIRSF PIRSF034367 1 325 3.7E-196 T 25-04-2017 IPR015004 Protein of unknown function DUF1852 A4U88_RS05450 45cbafbe7c70f27a3c0dac018bf53788 70 SUPERFAMILY SSF55174 7 68 1.44E-19 T 25-04-2017 A4U88_RS05450 45cbafbe7c70f27a3c0dac018bf53788 70 Gene3D G3DSA:3.10.290.10 7 68 3.8E-26 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS05450 45cbafbe7c70f27a3c0dac018bf53788 70 Pfam PF13275 S4 domain 9 68 1.3E-24 T 25-04-2017 A4U88_RS23520 2dfdfc890d2b0ed382837ead127a3b8e 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 4.0E-48 T 25-04-2017 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 A4U88_RS23520 2dfdfc890d2b0ed382837ead127a3b8e 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.351 T 25-04-2017 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 A4U88_RS23520 2dfdfc890d2b0ed382837ead127a3b8e 105 SUPERFAMILY SSF47598 2 105 1.56E-57 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS23520 2dfdfc890d2b0ed382837ead127a3b8e 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 2.5E-58 T 25-04-2017 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 A4U88_RS23520 2dfdfc890d2b0ed382837ead127a3b8e 105 Gene3D G3DSA:1.10.140.10 2 105 8.6E-65 T 25-04-2017 IPR023453 Methionine repressor MetJ domain A4U88_RS21135 adbe1d103dd32672f85e1978791f4aa6 243 SUPERFAMILY SSF52317 42 220 3.7E-37 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS21135 adbe1d103dd32672f85e1978791f4aa6 243 Gene3D G3DSA:3.40.50.880 35 215 1.6E-42 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS21135 adbe1d103dd32672f85e1978791f4aa6 243 Pfam PF00117 Glutamine amidotransferase class-I 55 193 1.5E-17 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 PIRSF PIRSF001205 1 479 2.8E-213 T 25-04-2017 IPR016294 Peptidase M10B GO:0004222|GO:0005509|GO:0005615|GO:0006508|GO:0008270 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 Gene3D G3DSA:3.40.390.10 28 258 4.9E-47 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 364 382 - T 25-04-2017 IPR018511 Hemolysin-type calcium-binding conserved site A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 SUPERFAMILY SSF51120 257 476 4.45E-49 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 SMART SM00235 48 240 3.8E-25 T 25-04-2017 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 PRINTS PR00313 NodO calcium binding signature 359 367 2.1E-12 T 25-04-2017 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 PRINTS PR00313 NodO calcium binding signature 368 376 2.1E-12 T 25-04-2017 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 PRINTS PR00313 NodO calcium binding signature 338 349 2.1E-12 T 25-04-2017 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 PRINTS PR00313 NodO calcium binding signature 377 386 2.1E-12 T 25-04-2017 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 Gene3D G3DSA:2.150.10.10 264 448 8.1E-34 T 25-04-2017 IPR011049 Serralysin-like metalloprotease, C-terminal A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 Pfam PF08548 Peptidase M10 serralysin C terminal 256 479 5.2E-83 T 25-04-2017 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 A4U88_RS11765 0c5dd0790524ccc161bab75fba66fe39 479 SUPERFAMILY SSF55486 10 254 2.4E-69 T 25-04-2017 A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 Gene3D G3DSA:3.30.470.20 174 277 2.0E-36 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 Pfam PF08443 RimK-like ATP-grasp domain 97 286 1.2E-72 T 25-04-2017 IPR013651 ATP-grasp fold, RimK-type A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 Gene3D G3DSA:3.30.1490.20 103 173 2.1E-6 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 6.2E-92 T 25-04-2017 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 54.313 T 25-04-2017 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 Gene3D G3DSA:3.40.50.20 8 102 2.1E-17 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS08050 6a1fbe1ea7cbf107d0db37290366578d 300 SUPERFAMILY SSF56059 98 289 1.85E-48 T 25-04-2017 A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Gene3D G3DSA:3.30.70.1350 286 361 6.5E-10 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Gene3D G3DSA:3.30.70.1350 372 455 1.3E-17 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Gene3D G3DSA:3.30.70.1350 204 280 4.9E-13 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Pfam PF16916 Dimerisation domain of Zinc Transporter 287 361 6.9E-10 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Pfam PF16916 Dimerisation domain of Zinc Transporter 211 278 1.7E-8 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Pfam PF16916 Dimerisation domain of Zinc Transporter 378 453 2.2E-14 T 25-04-2017 IPR027470 Cation efflux protein, cytoplasmic domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 SUPERFAMILY SSF160240 287 361 3.27E-10 T 25-04-2017 A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 SUPERFAMILY SSF160240 380 454 2.49E-15 T 25-04-2017 A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 SUPERFAMILY SSF160240 206 279 1.29E-9 T 25-04-2017 A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 9 279 1.7E-62 T 25-04-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Gene3D G3DSA:1.20.1510.10 10 203 4.3E-42 T 25-04-2017 IPR027469 Cation efflux protein transmembrane domain A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 Pfam PF01545 Cation efflux family 12 203 4.2E-44 T 25-04-2017 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS12230 8769f706f36f7e58cbf78cba4a55fc8a 458 SUPERFAMILY SSF161111 6 204 4.18E-51 T 25-04-2017 A4U88_RS18460 d8c7a4ec7ce54538d02cc22f761f4fda 244 SUPERFAMILY SSF75217 3 165 3.53E-39 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS18460 d8c7a4ec7ce54538d02cc22f761f4fda 244 Pfam PF00588 SpoU rRNA Methylase family 5 154 1.3E-33 T 25-04-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 A4U88_RS18460 d8c7a4ec7ce54538d02cc22f761f4fda 244 PIRSF PIRSF004808 1 243 2.6E-77 T 25-04-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS18460 d8c7a4ec7ce54538d02cc22f761f4fda 244 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 238 2.2E-88 T 25-04-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS18460 d8c7a4ec7ce54538d02cc22f761f4fda 244 Gene3D G3DSA:3.40.1280.10 4 165 2.1E-32 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS08675 f75e6f243decc0a6ae29ced6f5ee0a96 152 Pfam PF07338 Protein of unknown function (DUF1471) 100 151 5.7E-12 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS08675 f75e6f243decc0a6ae29ced6f5ee0a96 152 SUPERFAMILY SSF159871 70 151 7.19E-18 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS08675 f75e6f243decc0a6ae29ced6f5ee0a96 152 Gene3D G3DSA:3.30.1660.10 86 151 6.8E-18 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 1.9E-19 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 SMART SM00354 6 76 3.8E-33 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 25-04-2017 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 SUPERFAMILY SSF53822 66 337 6.87E-79 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 Pfam PF13377 Periplasmic binding protein-like domain 175 334 1.3E-34 T 25-04-2017 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 Gene3D G3DSA:3.40.50.2300 63 171 6.3E-46 T 25-04-2017 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 Gene3D G3DSA:1.10.260.40 7 62 3.2E-26 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 Gene3D G3DSA:3.40.50.2300 172 335 4.2E-49 T 25-04-2017 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 SUPERFAMILY SSF47413 6 64 6.75E-19 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 8 18 8.6E-7 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS07565 2fee1b7b4284366fe0055d5062bdf530 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 18 28 8.6E-7 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS07230 221dc405b9a50f5a25eed952a287e778 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 2 152 9.8E-36 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS07230 221dc405b9a50f5a25eed952a287e778 155 Gene3D G3DSA:2.60.120.370 5 152 1.0E-36 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS07230 221dc405b9a50f5a25eed952a287e778 155 SUPERFAMILY SSF51197 2 153 1.13E-32 T 25-04-2017 A4U88_RS07230 221dc405b9a50f5a25eed952a287e778 155 Pfam PF04074 Domain of unknown function (DUF386) 15 150 4.9E-31 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 Pfam PF00459 Inositol monophosphatase family 11 261 8.4E-50 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 Gene3D G3DSA:3.30.540.10 9 160 3.2E-47 T 25-04-2017 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 89 102 - T 25-04-2017 IPR020583 Inositol monophosphatase, metal-binding site A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 Gene3D G3DSA:3.40.190.80 161 264 1.6E-16 T 25-04-2017 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 SUPERFAMILY SSF56655 10 264 5.76E-66 T 25-04-2017 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 6.1E-31 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 69 85 6.1E-31 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 183 204 6.1E-31 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 47 67 6.1E-31 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 138 161 6.1E-31 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS12225 a439c9018dddb7b231d149179411adef 281 PRINTS PR00377 Inositol monophosphatase superfamily signature 214 238 6.1E-31 T 25-04-2017 IPR000760 Inositol monophosphatase GO:0046854 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 Hamap MF_00367 GTPase Era [era]. 6 297 35.799 T 25-04-2017 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 79 97 9.5E-6 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 11 31 9.5E-6 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 Gene3D G3DSA:3.30.300.20 194 294 1.3E-40 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 Pfam PF01926 50S ribosome-binding GTPase 11 125 2.8E-22 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 TIGRFAM TIGR00436 era: GTP-binding protein Era 9 280 5.0E-117 T 25-04-2017 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 SUPERFAMILY SSF54814 182 297 9.81E-42 T 25-04-2017 IPR009019 K homology domain, prokaryotic type GO:0003723 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 SUPERFAMILY SSF52540 11 205 1.5E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 171 3.4E-40 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 Pfam PF07650 KH domain 209 285 4.1E-19 T 25-04-2017 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS18630 3637d1fb2dceee5bca636ddb8601715d 302 Gene3D G3DSA:3.40.50.300 6 193 6.1E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13795 0847b34c3539d18e650c9813d3d05a2b 266 Pfam PF03609 PTS system sorbose-specific iic component 6 237 6.4E-74 T 25-04-2017 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 A4U88_RS13795 0847b34c3539d18e650c9813d3d05a2b 266 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 266 1.8E-121 T 25-04-2017 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 SMART SM00739 127 154 1.6E-6 T 25-04-2017 IPR005824 KOW A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 Gene3D G3DSA:3.30.70.940 6 116 7.6E-43 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 5.5E-71 T 25-04-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 Gene3D G3DSA:2.30.30.30 120 180 1.2E-31 T 25-04-2017 IPR014722 Ribosomal protein L2 domain 2 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 Pfam PF02357 Transcription termination factor nusG 7 112 1.9E-27 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.694 T 25-04-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 SUPERFAMILY SSF50104 125 180 9.03E-20 T 25-04-2017 IPR008991 Translation protein SH3-like domain A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 Pfam PF00467 KOW motif 130 162 7.5E-8 T 25-04-2017 IPR005824 KOW A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 25-04-2017 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 25-04-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 25-04-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 25-04-2017 IPR001062 Transcription antitermination protein, NusG GO:0032784 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 SUPERFAMILY SSF82679 6 116 3.4E-40 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS01145 f19776cbf3ebba07f6161b5479fa2bdd 181 SMART SM00738 6 115 2.0E-50 T 25-04-2017 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 A4U88_RS17580 db4be67b500bbef50c7dd40cf6b6db62 330 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 6 314 3.4E-99 T 25-04-2017 IPR016833 Putative sodium bile acid cotransporter A4U88_RS17580 db4be67b500bbef50c7dd40cf6b6db62 330 PIRSF PIRSF026166 1 329 1.9E-130 T 25-04-2017 IPR016833 Putative sodium bile acid cotransporter A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 Pfam PF13404 AsnC-type helix-turn-helix domain 4 41 4.4E-14 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 1.5E-19 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 SUPERFAMILY SSF46785 2 63 1.97E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 Gene3D G3DSA:3.30.70.920 57 153 1.4E-22 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 Gene3D G3DSA:1.10.10.10 1 55 4.1E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 SMART SM00344 4 113 1.8E-31 T 25-04-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 1.8E-10 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 1.8E-10 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 1.8E-10 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS21840 1b371aaec6e20d4af32403f1e2d79335 155 SUPERFAMILY SSF54909 65 153 8.45E-17 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS07190 17f2a142941b808fd3b5ca7c2998317c 335 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 69 199 2.6E-10 T 25-04-2017 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 A4U88_RS07190 17f2a142941b808fd3b5ca7c2998317c 335 SUPERFAMILY SSF53474 204 329 2.08E-35 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS07190 17f2a142941b808fd3b5ca7c2998317c 335 SUPERFAMILY SSF53474 21 172 2.08E-35 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS07190 17f2a142941b808fd3b5ca7c2998317c 335 Gene3D G3DSA:3.40.50.1820 31 291 1.9E-37 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS07495 45ea67cbdf786155c9132cf3868c20b8 178 SUPERFAMILY SSF48452 2 174 4.93E-67 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS07495 45ea67cbdf786155c9132cf3868c20b8 178 Gene3D G3DSA:1.25.40.10 79 178 3.4E-36 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS07495 45ea67cbdf786155c9132cf3868c20b8 178 Gene3D G3DSA:1.20.58.320 3 77 1.0E-29 T 25-04-2017 A4U88_RS07495 45ea67cbdf786155c9132cf3868c20b8 178 Pfam PF06041 Bacterial protein of unknown function (DUF924) 5 175 1.1E-60 T 25-04-2017 IPR010323 Protein of unknown function DUF924 A4U88_RS18375 10196808f8bd5642f92e1e9f2dc05506 206 SUPERFAMILY SSF48452 89 191 4.36E-6 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS18375 10196808f8bd5642f92e1e9f2dc05506 206 Gene3D G3DSA:1.25.40.10 91 188 3.9E-4 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS18375 10196808f8bd5642f92e1e9f2dc05506 206 PIRSF PIRSF006170 1 206 1.4E-56 T 25-04-2017 IPR026039 Uncharacterised protein family UPF0070 A4U88_RS18375 10196808f8bd5642f92e1e9f2dc05506 206 Pfam PF09976 Tetratricopeptide repeat-like domain 15 205 9.8E-58 T 25-04-2017 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038 A4U88_RS00725 e90b1e70355c313dda43584e351f8ee4 206 PIRSF PIRSF006324 1 206 1.1E-40 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS00725 e90b1e70355c313dda43584e351f8ee4 206 Pfam PF01810 LysE type translocator 14 204 3.9E-52 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS00725 e90b1e70355c313dda43584e351f8ee4 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 3.7E-62 T 25-04-2017 IPR004778 Homoserine/Threonine efflux protein GO:0016021 A4U88_RS04880 416ed0ba773a3c65ad13d5b973a8cb32 466 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 94 417 1.8E-24 T 25-04-2017 IPR005565 Haemolysin activator HlyB A4U88_RS04880 416ed0ba773a3c65ad13d5b973a8cb32 466 Gene3D G3DSA:3.10.20.310 15 74 6.4E-9 T 25-04-2017 A4U88_RS04880 416ed0ba773a3c65ad13d5b973a8cb32 466 Pfam PF08479 POTRA domain, ShlB-type 15 71 1.4E-6 T 25-04-2017 IPR013686 Polypeptide-transport-associated, ShlB-type A4U88_RS04880 416ed0ba773a3c65ad13d5b973a8cb32 466 Gene3D G3DSA:2.40.160.50 105 466 1.1E-80 T 25-04-2017 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 70.865 T 25-04-2017 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 Gene3D G3DSA:3.40.47.10 161 316 5.3E-53 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 8.6E-148 T 25-04-2017 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 SUPERFAMILY SSF53901 4 317 4.52E-71 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 6.9E-32 T 25-04-2017 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 Gene3D G3DSA:3.40.47.10 1 160 5.2E-64 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS09195 0c16be03f15e3cae5a25bbfc71c489d9 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 1.5E-36 T 25-04-2017 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 Gene3D G3DSA:3.40.605.10 2 220 1.7E-104 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 Gene3D G3DSA:3.40.605.10 375 415 1.7E-104 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 PIRSF PIRSF000151 1 417 4.0E-172 T 25-04-2017 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 416 40.911 T 25-04-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 SUPERFAMILY SSF53720 2 412 1.31E-113 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 Gene3D G3DSA:3.40.309.10 223 374 4.5E-40 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 9 406 7.8E-187 T 25-04-2017 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 25-04-2017 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 A4U88_RS04205 afe32322e00bf8b16355f6a0839aa521 417 Pfam PF00171 Aldehyde dehydrogenase family 5 280 1.6E-13 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 SUPERFAMILY SSF50249 14 69 3.2E-14 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 Pfam PF01938 TRAM domain 18 69 2.5E-13 T 25-04-2017 IPR002792 TRAM domain A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 27 433 2.3E-139 T 25-04-2017 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 Gene3D G3DSA:2.40.50.140 2 90 1.0E-32 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 21 441 65.004 T 25-04-2017 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 423 433 - T 25-04-2017 IPR030391 RNA methyltransferase TrmA, conserved site A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 104 437 1.5E-25 T 25-04-2017 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 SUPERFAMILY SSF53335 79 438 1.6E-83 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 372 402 - T 25-04-2017 IPR030390 RNA methyltransferase TrmA, active site A4U88_RS03515 463a381f57a689ead9deabe51b0877ae 449 Gene3D G3DSA:3.40.50.150 257 438 3.1E-59 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 Gene3D G3DSA:1.20.5.220 122 132 8.9E-4 T 25-04-2017 IPR029027 Single alpha-helix domain Reactome: R-HSA-611105 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 130 1.8E-47 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 25-04-2017 IPR019823 Large-conductance mechanosensitive channel, conserved site A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 134 30.4 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 SUPERFAMILY SSF81330 12 127 6.93E-37 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 6.9E-14 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 6.9E-14 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 6.9E-14 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS22190 0e01cbf75fd12bd0ddf6b9e73ee2cf0f 138 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 3.2E-56 T 25-04-2017 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 SUPERFAMILY SSF53955 38 245 3.66E-51 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 Pfam PF00905 Penicillin binding protein transpeptidase domain 312 526 6.4E-18 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 693 776 9.4E-16 T 25-04-2017 IPR009647 Penicillin-binding, C-terminal A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 Gene3D G3DSA:1.10.3810.10 59 210 2.7E-40 T 25-04-2017 A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 32 778 6.5E-271 T 25-04-2017 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 SUPERFAMILY SSF56601 260 647 1.5E-92 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 Pfam PF00912 Transglycosylase 59 206 6.1E-41 T 25-04-2017 IPR001264 Glycosyl transferase, family 51 A4U88_RS19310 9592570623d6097adc205a9106c1e95f 782 Gene3D G3DSA:3.40.710.10 257 633 4.6E-76 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS15000 fcbc27173a0880f396bb87b7602f3d28 72 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 64 2.8E-19 T 25-04-2017 IPR012783 Zinc finger, C4 DksA/TraR-type A4U88_RS15000 fcbc27173a0880f396bb87b7602f3d28 72 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 33 64 3.3E-10 T 25-04-2017 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 A4U88_RS15000 fcbc27173a0880f396bb87b7602f3d28 72 SUPERFAMILY SSF57716 34 70 1.2E-6 T 25-04-2017 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 Pfam PF02056 Family 4 glycosyl hydrolase 2 181 2.8E-33 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 71 87 7.9E-21 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 188 200 7.9E-21 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 92 105 7.9E-21 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 136 153 7.9E-21 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 162 173 7.9E-21 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 PRINTS PR00732 Glycosyl hydrolase family 4 signature 2 17 7.9E-21 T 25-04-2017 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 SUPERFAMILY SSF56327 166 456 6.17E-55 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 Gene3D G3DSA:3.40.50.720 1 161 5.5E-49 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 192 436 3.2E-39 T 25-04-2017 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 Gene3D G3DSA:3.90.110.10 330 460 2.8E-82 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 Gene3D G3DSA:3.90.110.10 165 292 2.8E-82 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS09795 563f479519481b8cdd4364e4a56e5a10 461 SUPERFAMILY SSF51735 1 157 2.75E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09600 c1dc91b7602fa9d79ab400992444a5cd 145 Gene3D G3DSA:3.40.50.2020 24 137 5.8E-26 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS09600 c1dc91b7602fa9d79ab400992444a5cd 145 Pfam PF00156 Phosphoribosyl transferase domain 69 112 1.4E-7 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS09600 c1dc91b7602fa9d79ab400992444a5cd 145 SUPERFAMILY SSF53271 23 133 4.72E-19 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 Pfam PF00593 TonB dependent receptor 476 758 3.5E-35 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 57 - T 25-04-2017 IPR010916 TonB box, conserved site A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 743 760 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 Gene3D G3DSA:2.40.170.20 182 760 1.0E-118 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 760 7.5E-119 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 179 2.1E-29 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 SUPERFAMILY SSF56935 50 760 1.75E-135 T 25-04-2017 A4U88_RS01355 cb8d83e7b63e8a7f534df538899e5680 760 Gene3D G3DSA:2.170.130.10 66 181 1.6E-37 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS23565 546355c3c5f18238d9318b633fea5b73 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 17.883 T 25-04-2017 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 A4U88_RS23565 546355c3c5f18238d9318b633fea5b73 79 Pfam PF06005 Protein of unknown function (DUF904) 1 78 3.2E-29 T 25-04-2017 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 A4U88_RS23565 546355c3c5f18238d9318b633fea5b73 79 Gene3D G3DSA:1.10.287.40 22 78 0.001 T 25-04-2017 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 SUPERFAMILY SSF46785 2 85 1.45E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 Gene3D G3DSA:1.10.10.10 3 81 6.7E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.2E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.2E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.2E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 Gene3D G3DSA:3.40.190.10 179 263 8.2E-23 T 25-04-2017 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 Pfam PF03466 LysR substrate binding domain 89 292 1.0E-35 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 Gene3D G3DSA:3.40.190.10 89 178 6.6E-18 T 25-04-2017 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 SUPERFAMILY SSF53850 104 292 1.72E-30 T 25-04-2017 A4U88_RS23070 6a464c0eae8140c70f9ad6411bf2cf6a 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.1E-22 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 372 585 2.1E-23 T 25-04-2017 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 263 276 4.0E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 124 142 4.0E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 357 376 4.0E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 566 579 4.0E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 146 158 4.0E-19 T 25-04-2017 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 Gene3D G3DSA:3.20.20.10 94 356 3.8E-59 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 SUPERFAMILY SSF50621 482 586 3.31E-7 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 657 42.954 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PIRSF PIRSF001336 17 658 6.3E-254 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 124 142 - T 25-04-2017 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 99 368 5.1E-70 T 25-04-2017 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 347 364 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 488 509 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 116 130 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 170 185 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 220 242 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 196 217 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 513 538 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 566 587 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 PRINTS PR01180 Arginine decarboxylase signature 92 107 2.0E-73 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 Gene3D G3DSA:2.40.37.10 479 610 5.1E-12 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 Gene3D G3DSA:2.40.37.10 357 380 5.1E-12 T 25-04-2017 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 301 314 - T 25-04-2017 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 TIGRFAM TIGR01273 speA: arginine decarboxylase 32 656 5.9E-271 T 25-04-2017 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 A4U88_RS20310 377d1231ad36fa09622ea79c941dda67 658 SUPERFAMILY SSF51419 92 369 4.86E-67 T 25-04-2017 IPR029066 PLP-binding barrel A4U88_RS02005 f8fac483bffbee973a9617a123534d81 79 Gene3D G3DSA:3.30.110.40 8 79 4.4E-33 T 25-04-2017 IPR001455 TusA-like domain A4U88_RS02005 f8fac483bffbee973a9617a123534d81 79 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 25-04-2017 IPR001455 TusA-like domain A4U88_RS02005 f8fac483bffbee973a9617a123534d81 79 Pfam PF01206 Sulfurtransferase TusA 11 79 2.6E-20 T 25-04-2017 IPR001455 TusA-like domain A4U88_RS02005 f8fac483bffbee973a9617a123534d81 79 SUPERFAMILY SSF64307 4 79 1.57E-24 T 25-04-2017 IPR001455 TusA-like domain A4U88_RS23720 a8b37fdb6b3f7a3cd2b6a51d91406e6c 321 SUPERFAMILY SSF53756 1 320 6.44E-77 T 25-04-2017 A4U88_RS23720 a8b37fdb6b3f7a3cd2b6a51d91406e6c 321 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 77 308 7.4E-72 T 25-04-2017 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 A4U88_RS23720 a8b37fdb6b3f7a3cd2b6a51d91406e6c 321 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 319 1.1E-125 T 25-04-2017 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 A4U88_RS23720 a8b37fdb6b3f7a3cd2b6a51d91406e6c 321 Gene3D G3DSA:3.40.50.2000 165 320 3.0E-38 T 25-04-2017 A4U88_RS23720 a8b37fdb6b3f7a3cd2b6a51d91406e6c 321 Gene3D G3DSA:3.40.50.2000 1 157 2.3E-31 T 25-04-2017 A4U88_RS04855 5e76bfb8abe5482a0a47c51ae17f7e1c 306 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 88 104 - T 25-04-2017 IPR000092 Polyprenyl synthetase GO:0008299 A4U88_RS04855 5e76bfb8abe5482a0a47c51ae17f7e1c 306 Gene3D G3DSA:1.10.600.10 12 304 4.1E-88 T 25-04-2017 IPR008949 Isoprenoid synthase domain A4U88_RS04855 5e76bfb8abe5482a0a47c51ae17f7e1c 306 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 25-04-2017 IPR000092 Polyprenyl synthetase GO:0008299 A4U88_RS04855 5e76bfb8abe5482a0a47c51ae17f7e1c 306 Pfam PF00348 Polyprenyl synthetase 42 269 4.7E-56 T 25-04-2017 IPR000092 Polyprenyl synthetase GO:0008299 A4U88_RS04855 5e76bfb8abe5482a0a47c51ae17f7e1c 306 SUPERFAMILY SSF48576 10 288 1.97E-85 T 25-04-2017 IPR008949 Isoprenoid synthase domain A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 SUPERFAMILY SSF90123 10 322 1.1E-42 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 14 556 3.3E-229 T 25-04-2017 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 SMART SM00382 356 550 1.2E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 Gene3D G3DSA:3.40.50.300 330 555 1.1E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 ProSitePatterns PS00211 ABC transporters family signature. 467 481 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 SUPERFAMILY SSF52540 322 556 5.86E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 Gene3D G3DSA:1.20.1560.10 11 315 4.6E-38 T 25-04-2017 A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 Pfam PF00005 ABC transporter 347 494 4.0E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS04655 76784295d2193424370f5c491c06eba4 592 Pfam PF00664 ABC transporter transmembrane region 24 281 9.2E-13 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS16515 913ecb7ac93ea2dfa2ee7e333499e8c3 80 SUPERFAMILY SSF54857 1 77 1.7E-24 T 25-04-2017 IPR010391 DNA damage-inducible protein DinI-like A4U88_RS16515 913ecb7ac93ea2dfa2ee7e333499e8c3 80 Pfam PF06183 DinI-like family 17 76 8.9E-23 T 25-04-2017 IPR010391 DNA damage-inducible protein DinI-like A4U88_RS16515 913ecb7ac93ea2dfa2ee7e333499e8c3 80 Gene3D G3DSA:3.30.910.10 1 78 2.1E-26 T 25-04-2017 IPR010391 DNA damage-inducible protein DinI-like A4U88_RS13525 79fc3798ec19683607ac565620c3feb8 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 30.5 T 25-04-2017 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 A4U88_RS13525 79fc3798ec19683607ac565620c3feb8 109 SUPERFAMILY SSF103481 11 108 4.18E-18 T 25-04-2017 A4U88_RS13525 79fc3798ec19683607ac565620c3feb8 109 Pfam PF00893 Small Multidrug Resistance protein 10 99 1.9E-27 T 25-04-2017 IPR000390 Small multidrug resistance protein family GO:0016021 A4U88_RS14170 9809fa2dccb67d8064ee50dc28a7a179 223 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS14170 9809fa2dccb67d8064ee50dc28a7a179 223 Pfam PF00005 ABC transporter 24 171 2.1E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS14170 9809fa2dccb67d8064ee50dc28a7a179 223 Gene3D G3DSA:3.40.50.300 2 222 7.6E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14170 9809fa2dccb67d8064ee50dc28a7a179 223 SMART SM00382 32 220 1.0E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS14170 9809fa2dccb67d8064ee50dc28a7a179 223 SUPERFAMILY SSF52540 3 222 7.71E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 Gene3D G3DSA:1.10.10.10 136 234 3.2E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 SMART SM00862 155 231 9.6E-19 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 SMART SM00448 2 112 8.8E-31 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 5.1E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 Gene3D G3DSA:3.40.50.2300 1 135 5.6E-30 T 25-04-2017 A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 SUPERFAMILY SSF52172 1 184 2.4E-31 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS12550 0f1a161e962ea08d96cc737b0b836de8 241 Pfam PF00072 Response regulator receiver domain 4 112 4.0E-19 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS04295 0844bdaa147d88854cfeaa2d05416781 174 Gene3D G3DSA:2.60.40.1090 24 174 7.8E-33 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS04295 0844bdaa147d88854cfeaa2d05416781 174 SUPERFAMILY SSF49401 24 174 7.46E-29 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS04295 0844bdaa147d88854cfeaa2d05416781 174 Pfam PF00419 Fimbrial protein 30 173 3.6E-10 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS03670 baf9098f50961cc76fcb4293cc76a4f0 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 6.2E-77 T 25-04-2017 A4U88_RS03670 baf9098f50961cc76fcb4293cc76a4f0 208 Gene3D G3DSA:3.40.50.150 12 205 8.4E-66 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03670 baf9098f50961cc76fcb4293cc76a4f0 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 1 207 1.1E-90 T 25-04-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 A4U88_RS03670 baf9098f50961cc76fcb4293cc76a4f0 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 25-04-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 A4U88_RS03670 baf9098f50961cc76fcb4293cc76a4f0 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 39.081 T 25-04-2017 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 A4U88_RS03670 baf9098f50961cc76fcb4293cc76a4f0 208 SUPERFAMILY SSF53335 4 204 1.07E-48 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 SUPERFAMILY SSF55979 245 366 5.16E-37 T 25-04-2017 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 SMART SM00480 17 362 1.6E-167 T 25-04-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 PIRSF PIRSF000804 1 366 3.5E-117 T 25-04-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 8.6E-39 T 25-04-2017 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 Gene3D G3DSA:3.10.150.10 122 248 4.5E-39 T 25-04-2017 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 7.9E-113 T 25-04-2017 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 Gene3D G3DSA:3.10.150.10 1 121 1.6E-31 T 25-04-2017 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 5.1E-44 T 25-04-2017 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 2.1E-40 T 25-04-2017 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 SUPERFAMILY SSF55979 125 244 3.59E-31 T 25-04-2017 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 SUPERFAMILY SSF55979 1 118 2.28E-26 T 25-04-2017 A4U88_RS00010 26f402973e365a57e2a52edd3f2b7a50 366 Gene3D G3DSA:3.10.150.10 249 366 3.8E-38 T 25-04-2017 A4U88_RS08690 52ff767ebfd0efdb5494c86550d8d028 142 Pfam PF07681 DoxX 14 95 1.4E-14 T 25-04-2017 IPR032808 DoxX family A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 Pfam PF00171 Aldehyde dehydrogenase family 14 470 6.5E-164 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 Gene3D G3DSA:3.40.605.10 2 258 3.8E-95 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 Hamap MF_01275 Gamma-aminobutyraldehyde dehydrogenase [prr]. 1 474 74.504 T 25-04-2017 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 SUPERFAMILY SSF53720 3 472 2.36E-159 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 TIGRFAM TIGR03374 ABALDH: 1-pyrroline dehydrogenase 2 473 1.4E-288 T 25-04-2017 IPR017749 1-pyrroline dehydrogenase GO:0009447|GO:0019145|GO:0051287|GO:0055114 KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3 A4U88_RS18510 a50e41058d6bb9e81e77684a43a9495c 474 Gene3D G3DSA:3.40.309.10 259 437 1.3E-62 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS15035 59cfcbc11b1046e2329dd4c7f399e1af 76 SMART SM00530 10 65 1.0E-13 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS15035 59cfcbc11b1046e2329dd4c7f399e1af 76 Pfam PF01381 Helix-turn-helix 12 63 1.0E-14 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS15035 59cfcbc11b1046e2329dd4c7f399e1af 76 SUPERFAMILY SSF47413 2 69 4.83E-17 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS15035 59cfcbc11b1046e2329dd4c7f399e1af 76 Gene3D G3DSA:1.10.260.40 1 69 2.9E-19 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS17420 5fb8506489c50acc3a019d6a94d68178 319 Gene3D G3DSA:3.40.367.20 99 298 1.7E-77 T 25-04-2017 A4U88_RS17420 5fb8506489c50acc3a019d6a94d68178 319 SUPERFAMILY SSF53067 1 314 1.49E-65 T 25-04-2017 A4U88_RS17420 5fb8506489c50acc3a019d6a94d68178 319 Hamap MF_00524 Glucokinase [glk]. 1 315 39.065 T 25-04-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 A4U88_RS17420 5fb8506489c50acc3a019d6a94d68178 319 TIGRFAM TIGR00749 glk: glucokinase 5 308 1.4E-140 T 25-04-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 A4U88_RS17420 5fb8506489c50acc3a019d6a94d68178 319 Pfam PF02685 Glucokinase 5 312 3.3E-123 T 25-04-2017 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 SUPERFAMILY SSF103473 318 499 1.44E-10 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 Gene3D G3DSA:1.20.1250.20 289 290 5.4E-6 T 25-04-2017 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 Gene3D G3DSA:1.20.1250.20 337 511 5.4E-6 T 25-04-2017 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 Gene3D G3DSA:1.20.1250.20 23 204 1.5E-17 T 25-04-2017 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 11 501 4.5E-111 T 25-04-2017 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 79 103 - T 25-04-2017 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 Pfam PF00854 POT family 91 463 2.0E-62 T 25-04-2017 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 SUPERFAMILY SSF103473 13 312 1.57E-25 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS09075 9c835832cead08fe72e7a30fee7d42b9 517 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 25-04-2017 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 SUPERFAMILY SSF52283 1 134 1.36E-29 T 25-04-2017 A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 1.0E-61 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 5.9E-28 T 25-04-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 1 324 68.719 T 25-04-2017 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 Gene3D G3DSA:3.40.50.720 2 113 3.4E-31 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 Gene3D G3DSA:3.40.50.720 114 287 1.8E-65 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00085 41e90a1c152c6e344a460adfa61e7eaa 325 SUPERFAMILY SSF51735 100 288 6.79E-59 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Gene3D G3DSA:3.90.190.20 326 477 1.7E-57 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 19 481 43.911 T 25-04-2017 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Pfam PF02875 Mur ligase family, glutamate ligase domain 326 418 2.0E-21 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Gene3D G3DSA:3.40.50.720 20 107 1.0E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Pfam PF08245 Mur ligase middle domain 124 304 1.4E-26 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 21 475 1.3E-184 T 25-04-2017 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 SUPERFAMILY SSF53244 323 477 1.54E-47 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Pfam PF01225 Mur ligase family, catalytic domain 21 118 8.4E-30 T 25-04-2017 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 SUPERFAMILY SSF51984 20 106 1.7E-29 T 25-04-2017 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 SUPERFAMILY SSF53623 105 322 1.83E-74 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS03370 f9b9219eecb3e818fc01cce298760c8c 491 Gene3D G3DSA:3.40.1190.10 108 325 1.8E-85 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS08415 c1b5fad35113c2330dbe0612ceaa5e3f 182 Gene3D G3DSA:3.30.1380.10 70 182 2.2E-29 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS08415 c1b5fad35113c2330dbe0612ceaa5e3f 182 SUPERFAMILY SSF55166 68 182 2.07E-32 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS08415 c1b5fad35113c2330dbe0612ceaa5e3f 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 4.9E-61 T 25-04-2017 IPR010275 Protein of unknown function DUF882 A4U88_RS04495 e78f273784a79ec9c68aedc24be2ad71 87 Pfam PF03891 Domain of unknown function (DUF333) 36 82 4.0E-19 T 25-04-2017 IPR005590 Protein of unknown function DUF333 A4U88_RS24110 f6e57b5b6ac72a647b1db77b47e1773b 156 SUPERFAMILY SSF81573 63 121 2.62E-15 T 25-04-2017 IPR028987 F-type ATP synthase subunit B-like, membrane domain A4U88_RS24110 f6e57b5b6ac72a647b1db77b47e1773b 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 13.312 T 25-04-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 A4U88_RS24110 f6e57b5b6ac72a647b1db77b47e1773b 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 8.5E-39 T 25-04-2017 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 A4U88_RS24110 f6e57b5b6ac72a647b1db77b47e1773b 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 4.3E-61 T 25-04-2017 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 A4U88_RS24110 f6e57b5b6ac72a647b1db77b47e1773b 156 Gene3D G3DSA:1.20.5.620 62 122 1.1E-25 T 25-04-2017 IPR028987 F-type ATP synthase subunit B-like, membrane domain A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 SUPERFAMILY SSF52440 1 103 4.32E-37 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.928 T 25-04-2017 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Gene3D G3DSA:3.30.1490.20 121 190 3.1E-33 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 4.5E-185 T 25-04-2017 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 6.7E-84 T 25-04-2017 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 1.4E-35 T 25-04-2017 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 SMART SM01210 330 423 3.6E-55 T 25-04-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Gene3D G3DSA:3.40.50.20 2 95 1.1E-37 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 SUPERFAMILY SSF56059 104 322 2.47E-69 T 25-04-2017 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Gene3D G3DSA:3.90.600.10 331 423 4.5E-35 T 25-04-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 SMART SM01209 103 296 2.0E-141 T 25-04-2017 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 8.4E-30 T 25-04-2017 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 25-04-2017 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 SUPERFAMILY SSF51246 329 424 5.18E-32 T 25-04-2017 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS01265 55c53af28634df8f66cea4b379f87e14 427 Gene3D G3DSA:3.30.470.20 191 328 1.7E-63 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS16775 a4440fd5862d2f4d53e13c1468b79dea 169 Pfam PF06496 Protein of unknown function (DUF1097) 8 142 6.6E-37 T 25-04-2017 IPR009476 Protein of unknown function DUF1097 A4U88_RS17880 1baa21ce7795859699dae670108b7d1c 289 Pfam PF04228 Putative neutral zinc metallopeptidase 1 286 3.3E-140 T 25-04-2017 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative A4U88_RS01955 755144b452400c78155029304724fa76 152 SUPERFAMILY SSF74942 85 152 1.96E-16 T 25-04-2017 IPR028998 Ribosome maturation factor RimP, C-terminal A4U88_RS01955 755144b452400c78155029304724fa76 152 Gene3D G3DSA:3.30.300.70 4 81 8.7E-33 T 25-04-2017 IPR028989 Ribosome maturation factor RimP, N-terminal A4U88_RS01955 755144b452400c78155029304724fa76 152 Pfam PF02576 Putative ribosome maturation factor RimP 14 148 7.0E-49 T 25-04-2017 IPR003728 Ribosome maturation factor RimP GO:0042274 A4U88_RS01955 755144b452400c78155029304724fa76 152 Gene3D G3DSA:2.30.30.180 89 149 4.0E-13 T 25-04-2017 IPR028998 Ribosome maturation factor RimP, C-terminal A4U88_RS01955 755144b452400c78155029304724fa76 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 152 24.349 T 25-04-2017 IPR003728 Ribosome maturation factor RimP GO:0042274 A4U88_RS01955 755144b452400c78155029304724fa76 152 SUPERFAMILY SSF75420 4 84 1.09E-24 T 25-04-2017 IPR028989 Ribosome maturation factor RimP, N-terminal A4U88_RS07205 59738363d035061eab17b8b65e01597b 219 Gene3D G3DSA:1.10.3720.10 14 217 1.4E-48 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07205 59738363d035061eab17b8b65e01597b 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 111 6.1E-32 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS07205 59738363d035061eab17b8b65e01597b 219 SUPERFAMILY SSF161098 13 202 1.96E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07205 59738363d035061eab17b8b65e01597b 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 1.2E-23 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04340 05a290f9e47df9f6df5f93d99d311bcb 152 Gene3D G3DSA:1.10.10.60 65 112 1.3E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04340 05a290f9e47df9f6df5f93d99d311bcb 152 SUPERFAMILY SSF46689 12 62 1.52E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04340 05a290f9e47df9f6df5f93d99d311bcb 152 SMART SM00342 28 111 5.3E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04340 05a290f9e47df9f6df5f93d99d311bcb 152 Pfam PF12833 Helix-turn-helix domain 35 112 3.8E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04340 05a290f9e47df9f6df5f93d99d311bcb 152 SUPERFAMILY SSF46689 64 112 3.45E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04340 05a290f9e47df9f6df5f93d99d311bcb 152 Gene3D G3DSA:1.10.10.60 10 64 5.0E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.019 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 25-04-2017 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 1.6E-101 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 Pfam PF01678 Diaminopimelate epimerase 152 267 5.4E-32 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 Pfam PF01678 Diaminopimelate epimerase 3 123 1.1E-33 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 SUPERFAMILY SSF54506 2 273 4.03E-54 T 25-04-2017 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 Gene3D G3DSA:3.10.310.10 122 262 5.8E-51 T 25-04-2017 A4U88_RS00665 48afccb806e9d79427c5d5e21e6d25e4 274 Gene3D G3DSA:3.10.310.10 1 121 1.0E-49 T 25-04-2017 A4U88_RS22440 8af9957e4c96842ccbba79afaa032046 602 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 599 48.825 T 25-04-2017 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 A4U88_RS22440 8af9957e4c96842ccbba79afaa032046 602 Pfam PF02254 TrkA-N domain 403 514 1.5E-24 T 25-04-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 A4U88_RS22440 8af9957e4c96842ccbba79afaa032046 602 SUPERFAMILY SSF51735 402 530 1.33E-29 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22440 8af9957e4c96842ccbba79afaa032046 602 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 3.1E-88 T 25-04-2017 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 A4U88_RS22440 8af9957e4c96842ccbba79afaa032046 602 Gene3D G3DSA:3.40.50.720 397 531 8.5E-38 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22440 8af9957e4c96842ccbba79afaa032046 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 373 3.5E-68 T 25-04-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 Gene3D G3DSA:3.50.50.60 250 333 1.8E-25 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 Gene3D G3DSA:3.50.50.60 2 148 3.0E-46 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PIRSF PIRSF000350 1 447 2.4E-84 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 318 2.2E-68 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 Gene3D G3DSA:3.50.50.60 149 249 5.2E-31 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 3.3E-34 T 25-04-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 5.1E-220 T 25-04-2017 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 Gene3D G3DSA:3.30.390.30 338 450 1.2E-43 T 25-04-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 4.7E-65 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.7E-28 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 1.7E-28 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 1.7E-28 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 1.7E-28 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 1.7E-28 T 25-04-2017 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 SUPERFAMILY SSF51905 3 371 9.64E-55 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 25-04-2017 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 A4U88_RS23200 0df049d71b8fdc2c77b42bb2f7b50037 450 SUPERFAMILY SSF55424 336 450 3.95E-35 T 25-04-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 109 126 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 175 236 2.2E-17 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 Gene3D G3DSA:2.60.40.1070 156 248 1.8E-29 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 SUPERFAMILY SSF49354 34 151 6.02E-38 T 25-04-2017 IPR008962 PapD-like A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 SUPERFAMILY SSF49584 159 249 4.32E-25 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 PRINTS PR00969 Pili chaperone signature 34 43 8.5E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 PRINTS PR00969 Pili chaperone signature 80 101 8.5E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 PRINTS PR00969 Pili chaperone signature 110 127 8.5E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 PRINTS PR00969 Pili chaperone signature 170 185 8.5E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 PRINTS PR00969 Pili chaperone signature 133 148 8.5E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 Gene3D G3DSA:2.60.40.360 34 152 5.7E-44 T 25-04-2017 IPR008962 PapD-like A4U88_RS07955 4367d57c959a4b79180a6e8e04258a18 254 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 34 151 7.2E-37 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS08785 4265e15e7b6f9d9625d369871a682a14 239 SUPERFAMILY SSF52096 2 222 4.78E-61 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS08785 4265e15e7b6f9d9625d369871a682a14 239 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 25-04-2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 A4U88_RS08785 4265e15e7b6f9d9625d369871a682a14 239 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 229 3.7E-48 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS08785 4265e15e7b6f9d9625d369871a682a14 239 Gene3D G3DSA:3.90.226.10 2 235 1.9E-62 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 SUPERFAMILY SSF56801 20 503 1.16E-116 T 25-04-2017 A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 Gene3D G3DSA:3.40.50.980 23 163 2.4E-30 T 25-04-2017 A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 ProSitePatterns PS00455 Putative AMP-binding domain signature. 154 165 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 Gene3D G3DSA:3.30.300.30 405 504 1.1E-27 T 25-04-2017 A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 Pfam PF00501 AMP-binding enzyme 28 410 1.3E-70 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 Gene3D G3DSA:3.40.50.980 164 327 3.2E-39 T 25-04-2017 A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 Pfam PF13193 AMP-binding enzyme C-terminal domain 419 494 2.9E-10 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS05325 7a17073fce7313aa0ad8c8c8e83e7569 506 Gene3D G3DSA:2.30.38.10 328 403 8.4E-12 T 25-04-2017 A4U88_RS21390 1f79904d6394e936e8df323bd7f678ef 192 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 14 184 1.0E-53 T 25-04-2017 IPR010664 Lipopolysaccharide assembly, LptC-related A4U88_RS21390 1f79904d6394e936e8df323bd7f678ef 192 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 183 1.3E-56 T 25-04-2017 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 A4U88_RS21390 1f79904d6394e936e8df323bd7f678ef 192 PIRSF PIRSF028513 1 187 3.0E-41 T 25-04-2017 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 A4U88_RS21390 1f79904d6394e936e8df323bd7f678ef 192 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 186 27.235 T 25-04-2017 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 A4U88_RS10535 b3f381debbe59762b8588769ef901bd1 384 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 71.253 T 25-04-2017 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 A4U88_RS10535 b3f381debbe59762b8588769ef901bd1 384 PIRSF PIRSF000390 1 381 1.4E-109 T 25-04-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase A4U88_RS10535 b3f381debbe59762b8588769ef901bd1 384 Gene3D G3DSA:3.40.640.10 4 251 1.7E-84 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS10535 b3f381debbe59762b8588769ef901bd1 384 Gene3D G3DSA:3.90.1150.10 255 379 2.2E-40 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS10535 b3f381debbe59762b8588769ef901bd1 384 SUPERFAMILY SSF53383 4 376 4.03E-112 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS10535 b3f381debbe59762b8588769ef901bd1 384 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 1.6E-127 T 25-04-2017 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase A4U88_RS09970 2f7bbe34564d225f0d0c20a6f1836f87 371 Pfam PF01594 Domain of unknown function DUF20 10 339 1.5E-50 T 25-04-2017 IPR002549 Transmembrane protein TqsA-like A4U88_RS21765 a80d1fa847018acc3f95f07f64dd90cc 135 Gene3D G3DSA:3.10.180.10 5 132 3.5E-24 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS21765 a80d1fa847018acc3f95f07f64dd90cc 135 SUPERFAMILY SSF54593 3 128 5.77E-24 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 Gene3D G3DSA:1.20.120.530 95 238 1.4E-18 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.9E-11 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.9E-11 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 2.5E-25 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 SMART SM00345 15 74 2.3E-29 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 SUPERFAMILY SSF48008 95 235 2.25E-21 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 SUPERFAMILY SSF46785 6 76 1.92E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 Pfam PF07729 FCD domain 99 226 2.9E-18 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 SMART SM00895 99 227 7.4E-19 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS20485 889e24f9b290bf222130442f5a0100be 254 Gene3D G3DSA:1.10.10.10 7 76 1.8E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08470 b663b3a86861bff6d634f0ec75c9ba94 321 SUPERFAMILY SSF53850 33 265 1.69E-49 T 25-04-2017 A4U88_RS08470 b663b3a86861bff6d634f0ec75c9ba94 321 Gene3D G3DSA:3.40.190.10 117 226 4.7E-31 T 25-04-2017 A4U88_RS08470 b663b3a86861bff6d634f0ec75c9ba94 321 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 37 317 1.2E-82 T 25-04-2017 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 A4U88_RS08470 b663b3a86861bff6d634f0ec75c9ba94 321 SMART SM00062 35 266 1.2E-25 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS08470 b663b3a86861bff6d634f0ec75c9ba94 321 Pfam PF09084 NMT1/THI5 like 72 190 1.0E-11 T 25-04-2017 IPR015168 SsuA/THI5-like A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 SUPERFAMILY SSF56719 32 483 2.62E-155 T 25-04-2017 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Gene3D G3DSA:2.120.10.90 497 741 1.0E-24 T 25-04-2017 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 743 0.0 T 25-04-2017 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Gene3D G3DSA:3.90.199.10 31 238 1.5E-105 T 25-04-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Gene3D G3DSA:3.90.199.10 334 399 1.5E-105 T 25-04-2017 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 632 0.0021 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 696 3.5E-7 T 25-04-2017 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 34.271 T 25-04-2017 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 SMART SM00434 12 462 3.0E-238 T 25-04-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 SUPERFAMILY SSF101904 498 745 2.09E-51 T 25-04-2017 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 6.4E-134 T 25-04-2017 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 A4U88_RS20865 18cb0d1838464785804379381b3d59a6 757 Gene3D G3DSA:3.30.1360.40 239 332 8.7E-25 T 25-04-2017 IPR024946 Arginine repressor C-terminal-like domain A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 133 2.9E-13 T 25-04-2017 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 21.762 T 25-04-2017 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 2.0E-30 T 25-04-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 SUPERFAMILY SSF51344 3 86 3.01E-25 T 25-04-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 SUPERFAMILY SSF46604 89 137 1.46E-15 T 25-04-2017 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 Gene3D G3DSA:2.60.15.10 3 91 2.7E-30 T 25-04-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 Gene3D G3DSA:1.20.5.440 92 134 2.7E-24 T 25-04-2017 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 3.7E-47 T 25-04-2017 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24135 aa81f73169408095bafa867f84fde90b 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-37 T 25-04-2017 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 Gene3D G3DSA:3.40.50.720 1 179 3.6E-60 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 SUPERFAMILY SSF48179 176 467 1.57E-131 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 252 264 - T 25-04-2017 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 Gene3D G3DSA:1.10.1040.10 180 433 7.8E-117 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 173 1.3E-51 T 25-04-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 SUPERFAMILY SSF51735 4 175 9.25E-52 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 Gene3D G3DSA:1.20.5.320 436 467 1.0E-22 T 25-04-2017 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PIRSF PIRSF000109 1 468 2.8E-241 T 25-04-2017 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 167 195 1.5E-89 T 25-04-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 25-04-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 25-04-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 248 275 1.5E-89 T 25-04-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 25-04-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 356 378 1.5E-89 T 25-04-2017 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 SMART SM01350 178 467 6.5E-224 T 25-04-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 6.2E-230 T 25-04-2017 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS07810 612f718358afbd43dee4af222ae4b67b 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 178 466 8.0E-132 T 25-04-2017 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 Pfam PF07883 Cupin domain 111 178 4.1E-16 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 Gene3D G3DSA:2.60.120.10 75 183 1.4E-23 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 SMART SM00530 11 66 4.4E-15 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 SUPERFAMILY SSF47413 7 71 2.03E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 Gene3D G3DSA:1.10.260.40 6 71 3.1E-21 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 SUPERFAMILY SSF51182 51 183 1.61E-29 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS16265 bde3332e42cfa57d0054824d4fd4b0b5 185 Pfam PF01381 Helix-turn-helix 13 66 1.7E-14 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 Pfam PF03466 LysR substrate binding domain 102 303 3.0E-29 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 SUPERFAMILY SSF53850 104 306 3.26E-35 T 25-04-2017 A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 Gene3D G3DSA:3.40.190.10 177 272 3.5E-21 T 25-04-2017 A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 78 1.8E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 SUPERFAMILY SSF46785 17 100 1.21E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 Gene3D G3DSA:1.10.10.10 16 99 1.6E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12325 99b961d5da34413c94891aa80ad91d3e 309 Gene3D G3DSA:3.40.190.10 102 176 5.4E-5 T 25-04-2017 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 9.5E-72 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 Gene3D G3DSA:1.20.1080.10 7 260 9.1E-87 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 SUPERFAMILY SSF81338 11 259 5.76E-78 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 ProSitePatterns PS00221 MIP family signature. 68 76 - T 25-04-2017 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 Pfam PF00230 Major intrinsic protein 5 253 1.7E-70 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 PRINTS PR00783 Major intrinsic protein family signature 153 171 2.4E-50 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 PRINTS PR00783 Major intrinsic protein family signature 186 208 2.4E-50 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 PRINTS PR00783 Major intrinsic protein family signature 11 30 2.4E-50 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 PRINTS PR00783 Major intrinsic protein family signature 50 74 2.4E-50 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 PRINTS PR00783 Major intrinsic protein family signature 87 106 2.4E-50 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS23570 201de76e7f6d6f4440f83319645475bc 281 PRINTS PR00783 Major intrinsic protein family signature 236 256 2.4E-50 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS20995 38a4267da37822384088e81843646a15 274 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 273 18.377 T 25-04-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 A4U88_RS20995 38a4267da37822384088e81843646a15 274 Pfam PF02673 Bacitracin resistance protein BacA 10 268 1.3E-80 T 25-04-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 A4U88_RS20995 38a4267da37822384088e81843646a15 274 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 266 5.8E-101 T 25-04-2017 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 107 193 1.9E-18 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 SUPERFAMILY SSF52794 104 204 5.93E-35 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 215 551 8.3E-144 T 25-04-2017 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 106 189 6.1E-40 T 25-04-2017 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 SUPERFAMILY SSF52794 5 87 4.45E-8 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 Gene3D G3DSA:3.40.50.2300 3 88 7.3E-4 T 25-04-2017 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 Pfam PF02378 Phosphotransferase system, EIIC 232 495 3.8E-14 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS16330 7a8689dfb91d0eb3246d796439c9a028 561 Gene3D G3DSA:3.40.50.2300 101 205 3.2E-42 T 25-04-2017 A4U88_RS14110 ea7318616a56a5367ae6f6866a58999f 726 Pfam PF02706 Chain length determinant protein 20 251 4.0E-27 T 25-04-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 A4U88_RS14110 ea7318616a56a5367ae6f6866a58999f 726 SUPERFAMILY SSF52540 527 705 2.25E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14110 ea7318616a56a5367ae6f6866a58999f 726 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 509 712 1.6E-49 T 25-04-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 A4U88_RS14110 ea7318616a56a5367ae6f6866a58999f 726 Pfam PF13614 AAA domain 540 655 4.8E-12 T 25-04-2017 IPR025669 AAA domain A4U88_RS14110 ea7318616a56a5367ae6f6866a58999f 726 Pfam PF13807 G-rich domain on putative tyrosine kinase 367 448 6.4E-31 T 25-04-2017 IPR032807 Tyrosine kinase, G-rich domain A4U88_RS14110 ea7318616a56a5367ae6f6866a58999f 726 Gene3D G3DSA:3.40.50.300 528 704 3.6E-34 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24150 6433e19fe216943db6db361b0b402caa 346 PIRSF PIRSF002756 2 338 8.8E-106 T 25-04-2017 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 A4U88_RS24150 6433e19fe216943db6db361b0b402caa 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 8.5E-129 T 25-04-2017 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 A4U88_RS24150 6433e19fe216943db6db361b0b402caa 346 SUPERFAMILY SSF53850 29 335 7.25E-96 T 25-04-2017 A4U88_RS24150 6433e19fe216943db6db361b0b402caa 346 Pfam PF12849 PBP superfamily domain 23 307 6.1E-61 T 25-04-2017 IPR024370 PBP domain A4U88_RS24150 6433e19fe216943db6db361b0b402caa 346 Gene3D G3DSA:3.40.190.10 27 177 2.7E-55 T 25-04-2017 A4U88_RS24150 6433e19fe216943db6db361b0b402caa 346 Gene3D G3DSA:3.40.190.10 181 338 6.5E-37 T 25-04-2017 A4U88_RS05250 0b04ba03b15a55f51eb409ab8b67bf4e 276 Gene3D G3DSA:3.40.50.1820 34 268 1.7E-24 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS05250 0b04ba03b15a55f51eb409ab8b67bf4e 276 Pfam PF00975 Thioesterase domain 46 265 3.7E-32 T 25-04-2017 IPR001031 Thioesterase GO:0009058|GO:0016788 Reactome: R-HSA-75105 A4U88_RS05250 0b04ba03b15a55f51eb409ab8b67bf4e 276 SUPERFAMILY SSF53474 27 266 8.32E-39 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01735 22474534088fd545b3076bdb19e9aa2e 88 Gene3D G3DSA:3.30.1660.10 18 88 3.9E-20 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS01735 22474534088fd545b3076bdb19e9aa2e 88 Pfam PF07338 Protein of unknown function (DUF1471) 33 88 2.3E-19 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS01735 22474534088fd545b3076bdb19e9aa2e 88 SUPERFAMILY SSF159871 2 88 1.96E-23 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 SUPERFAMILY SSF52540 275 486 6.13E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 SMART SM00382 279 480 4.8E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 SMART SM00382 29 217 1.9E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 Gene3D G3DSA:3.40.50.300 3 225 6.2E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 Gene3D G3DSA:3.40.50.300 275 487 4.6E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 SUPERFAMILY SSF52540 3 224 8.38E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 Pfam PF00005 ABC transporter 275 423 9.8E-16 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16180 c7c310464eaa84475c1685834d752d2b 496 Pfam PF00005 ABC transporter 20 170 8.2E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Gene3D G3DSA:1.10.3500.10 450 497 3.9E-105 T 25-04-2017 IPR023323 Tex-like domain A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Gene3D G3DSA:1.10.3500.10 110 322 3.9E-105 T 25-04-2017 IPR023323 Tex-like domain A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Pfam PF12836 Helix-hairpin-helix motif 490 554 2.0E-28 T 25-04-2017 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Gene3D G3DSA:1.10.10.650 2 109 5.8E-46 T 25-04-2017 IPR023319 Tex-like protein, HTH domain A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SUPERFAMILY SSF47781 469 557 2.11E-28 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SMART SM00732 326 423 7.3E-33 T 25-04-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Gene3D G3DSA:3.30.420.140 327 449 2.3E-48 T 25-04-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Pfam PF09371 Tex-like protein N-terminal domain 9 193 6.3E-71 T 25-04-2017 IPR018974 Tex-like protein, N-terminal A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SUPERFAMILY SSF53098 322 468 2.02E-49 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SUPERFAMILY SSF158832 4 321 2.22E-120 T 25-04-2017 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SUPERFAMILY SSF47781 559 631 3.33E-19 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Pfam PF00575 S1 RNA binding domain 648 719 2.7E-23 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Pfam PF16921 Tex protein YqgF-like domain 327 450 2.1E-49 T 25-04-2017 IPR032639 Tex protein, YqgF-like domain A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SMART SM00316 648 719 1.8E-26 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 SUPERFAMILY SSF50249 637 721 3.72E-25 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Gene3D G3DSA:1.10.150.310 498 629 2.5E-47 T 25-04-2017 IPR023097 Tex RuvX-like domain A4U88_RS22750 352693b0025e55bdbd99d716c4ccb02d 777 Gene3D G3DSA:2.40.50.140 632 719 1.1E-29 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS03195 9349a90375114569479ad6190f56c3e5 786 Pfam PF04453 Organic solvent tolerance protein 304 699 5.1E-108 T 25-04-2017 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 A4U88_RS03195 9349a90375114569479ad6190f56c3e5 786 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 8 765 21.451 T 25-04-2017 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 A4U88_RS03195 9349a90375114569479ad6190f56c3e5 786 Gene3D G3DSA:2.60.450.10 46 208 3.9E-26 T 25-04-2017 A4U88_RS03195 9349a90375114569479ad6190f56c3e5 786 Pfam PF03968 OstA-like protein 52 193 2.4E-27 T 25-04-2017 IPR005653 Organic solvent tolerance-like, N-terminal A4U88_RS02730 2354a3d535bee3a17411d6884dfbdb1d 380 SUPERFAMILY SSF56601 31 358 4.99E-66 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS02730 2354a3d535bee3a17411d6884dfbdb1d 380 Gene3D G3DSA:3.40.710.10 19 370 1.9E-67 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS02730 2354a3d535bee3a17411d6884dfbdb1d 380 Pfam PF00144 Beta-lactamase 38 357 5.1E-62 T 25-04-2017 IPR001466 Beta-lactamase-related A4U88_RS15995 36fe3d4f64938ab5bb5848d94c33e699 238 Gene3D G3DSA:3.40.50.300 2 234 1.1E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15995 36fe3d4f64938ab5bb5848d94c33e699 238 SMART SM00382 30 216 3.0E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS15995 36fe3d4f64938ab5bb5848d94c33e699 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS15995 36fe3d4f64938ab5bb5848d94c33e699 238 SUPERFAMILY SSF52540 4 235 5.01E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15995 36fe3d4f64938ab5bb5848d94c33e699 238 Pfam PF00005 ABC transporter 21 165 5.3E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS20960 22b41300773b7b424191d38b181a8666 217 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 1.3E-83 T 25-04-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS20960 22b41300773b7b424191d38b181a8666 217 Gene3D G3DSA:3.90.870.10 11 215 6.0E-95 T 25-04-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain A4U88_RS20960 22b41300773b7b424191d38b181a8666 217 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 14 209 1.1E-82 T 25-04-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS20960 22b41300773b7b424191d38b181a8666 217 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 213 43.074 T 25-04-2017 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 A4U88_RS20960 22b41300773b7b424191d38b181a8666 217 SUPERFAMILY SSF55821 7 213 4.58E-86 T 25-04-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain A4U88_RS21525 1500610fe7be6a8091e1533a049ac26f 182 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 23.839 T 25-04-2017 IPR006839 Ribosome-associated, YjgA A4U88_RS21525 1500610fe7be6a8091e1533a049ac26f 182 PIRSF PIRSF016183 9 182 3.7E-72 T 25-04-2017 IPR006839 Ribosome-associated, YjgA A4U88_RS21525 1500610fe7be6a8091e1533a049ac26f 182 SUPERFAMILY SSF158710 36 179 7.98E-52 T 25-04-2017 A4U88_RS21525 1500610fe7be6a8091e1533a049ac26f 182 Gene3D G3DSA:1.10.60.30 111 180 1.1E-31 T 25-04-2017 IPR023153 PSPTO4464-like domain A4U88_RS21525 1500610fe7be6a8091e1533a049ac26f 182 Gene3D G3DSA:1.10.60.30 35 109 2.0E-30 T 25-04-2017 IPR023153 PSPTO4464-like domain A4U88_RS21525 1500610fe7be6a8091e1533a049ac26f 182 Pfam PF04751 Protein of unknown function (DUF615) 25 175 1.9E-56 T 25-04-2017 IPR006839 Ribosome-associated, YjgA A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 SUPERFAMILY SSF158472 175 225 2.88E-6 T 25-04-2017 A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 34 124 2.3E-9 T 25-04-2017 IPR029095 NarX-like, N-terminal A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 499 586 7.2E-8 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 SUPERFAMILY SSF55874 464 586 4.06E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 Pfam PF07730 Histidine kinase 393 456 5.3E-17 T 25-04-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 Gene3D G3DSA:3.30.565.10 464 586 4.5E-9 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 SMART SM00304 175 228 4.5E-12 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 SMART SM00387 497 590 3.4E-9 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 PIRSF PIRSF003167 1 594 8.7E-189 T 25-04-2017 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 A4U88_RS14140 eac8539fcfc68441acbb254f57323cbf 594 Pfam PF00672 HAMP domain 158 224 7.1E-11 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS12310 eae334a5c359161bbb17826b5dcba9d0 196 Gene3D G3DSA:1.10.10.60 3 63 8.2E-22 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12310 eae334a5c359161bbb17826b5dcba9d0 196 SUPERFAMILY SSF46689 3 64 5.49E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12310 eae334a5c359161bbb17826b5dcba9d0 196 SUPERFAMILY SSF48498 81 193 7.19E-28 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS12310 eae334a5c359161bbb17826b5dcba9d0 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 3.6E-14 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS12310 eae334a5c359161bbb17826b5dcba9d0 196 ProSitePatterns PS01081 TetR-type HTH domain signature. 25 55 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS12310 eae334a5c359161bbb17826b5dcba9d0 196 Gene3D G3DSA:1.10.357.10 68 193 1.1E-37 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS04040 d9adae74b4c644743d0b7ab38e9ca36f 218 SUPERFAMILY SSF161098 13 201 3.01E-40 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04040 d9adae74b4c644743d0b7ab38e9ca36f 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 199 1.9E-13 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04040 d9adae74b4c644743d0b7ab38e9ca36f 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 106 2.3E-28 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS04040 d9adae74b4c644743d0b7ab38e9ca36f 218 Gene3D G3DSA:1.10.3720.10 10 212 2.2E-38 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05000 a7207da1333cc07f1580831a8463c8b7 346 Gene3D G3DSA:3.40.50.1100 46 140 4.6E-22 T 25-04-2017 A4U88_RS05000 a7207da1333cc07f1580831a8463c8b7 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 314 2.4E-44 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS05000 a7207da1333cc07f1580831a8463c8b7 346 SUPERFAMILY SSF53686 21 333 3.14E-69 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS05000 a7207da1333cc07f1580831a8463c8b7 346 Gene3D G3DSA:3.40.50.1100 141 331 5.6E-40 T 25-04-2017 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 5.2E-118 T 25-04-2017 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.515 T 25-04-2017 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 Gene3D G3DSA:3.30.930.10 9 327 6.0E-133 T 25-04-2017 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 3.8E-107 T 25-04-2017 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 SUPERFAMILY SSF55681 92 327 9.59E-82 T 25-04-2017 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 SUPERFAMILY SSF46589 14 99 7.85E-21 T 25-04-2017 IPR010978 tRNA-binding arm GO:0000166 A4U88_RS10500 032046f82ed15a94140c9fbbde56d4dd 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 1.8E-25 T 25-04-2017 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 A4U88_RS20420 2ca5838d5ac65834cf2b2c308e36a19a 256 PIRSF PIRSF006648 13 253 8.6E-24 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS20420 2ca5838d5ac65834cf2b2c308e36a19a 256 Pfam PF01061 ABC-2 type transporter 9 218 7.9E-39 T 25-04-2017 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 A4U88_RS20420 2ca5838d5ac65834cf2b2c308e36a19a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 7.5E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS20420 2ca5838d5ac65834cf2b2c308e36a19a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 7.5E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS20420 2ca5838d5ac65834cf2b2c308e36a19a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 138 162 7.5E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS20420 2ca5838d5ac65834cf2b2c308e36a19a 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 7.5E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 25-04-2017 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 2.2E-95 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 25-04-2017 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 SUPERFAMILY SSF81442 43 560 1.06E-178 T 25-04-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 Gene3D G3DSA:1.20.210.10 40 589 5.0E-188 T 25-04-2017 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04920 08a307c8ae770a042aa640122f270b4e 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 5.3E-135 T 25-04-2017 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS11880 a4a307fd3891139008be564c19e57545 105 Gene3D G3DSA:2.60.120.10 9 94 1.1E-12 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS11880 a4a307fd3891139008be564c19e57545 105 SUPERFAMILY SSF51182 8 92 2.25E-13 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 Gene3D G3DSA:1.10.287.990 20 82 1.3E-24 T 25-04-2017 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 2.2E-40 T 25-04-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 PIRSF PIRSF000349 1 192 9.9E-86 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 2.2E-34 T 25-04-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 25-04-2017 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 SUPERFAMILY SSF46609 1 84 2.36E-35 T 25-04-2017 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 SUPERFAMILY SSF54719 82 191 8.64E-44 T 25-04-2017 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.9E-22 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.9E-22 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.9E-22 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.9E-22 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS10775 a843ab219e5ea45a2737a4d5d71bee55 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.9E-22 T 25-04-2017 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 A4U88_RS20870 ed354db25191a3d60e9f014344001c59 193 Gene3D G3DSA:3.40.50.360 1 192 4.4E-46 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS20870 ed354db25191a3d60e9f014344001c59 193 Pfam PF02525 Flavodoxin-like fold 3 188 4.8E-37 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS20870 ed354db25191a3d60e9f014344001c59 193 SUPERFAMILY SSF52218 1 192 3.4E-41 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 Pfam PF03882 MukF winged-helix domain 3 117 8.7E-59 T 25-04-2017 IPR033439 Chromosome partition protein MukF, winged-helix domain A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 Gene3D G3DSA:1.10.10.10 24 118 1.1E-49 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 PIRSF PIRSF018282 1 440 6.1E-248 T 25-04-2017 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 SUPERFAMILY SSF140570 119 281 2.09E-76 T 25-04-2017 IPR033440 Chromosome partition protein MukF, middle domain A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 Pfam PF17193 MukF C-terminal domain 283 440 3.6E-80 T 25-04-2017 IPR033441 Chromosome partition protein MukF, C-terminal domain A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 Pfam PF17192 MukF middle domain 121 281 1.1E-84 T 25-04-2017 IPR033440 Chromosome partition protein MukF, middle domain A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 56.021 T 25-04-2017 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 A4U88_RS08395 262d2a0bd30ba68e9d7eaaf86abdc41e 440 SUPERFAMILY SSF46785 8 118 3.9E-50 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 25-04-2017 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 Pfam PF00579 tRNA synthetases class I (W and Y) 3 285 1.3E-86 T 25-04-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 SUPERFAMILY SSF52374 5 330 8.23E-102 T 25-04-2017 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 331 42.823 T 25-04-2017 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 Gene3D G3DSA:3.40.50.620 3 207 1.8E-95 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 Gene3D G3DSA:1.10.240.10 208 324 3.4E-21 T 25-04-2017 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 6.7E-29 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 6.7E-29 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 6.7E-29 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 195 205 6.7E-29 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS22620 8411f7fb65a5f341b00b0364c588ac5b 335 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 330 4.2E-119 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS09635 0cb94dfa733e27dc6448392946bda1b3 843 Pfam PF13954 PapC N-terminal domain 32 168 3.2E-35 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS09635 0cb94dfa733e27dc6448392946bda1b3 843 SUPERFAMILY SSF141729 31 146 7.06E-26 T 25-04-2017 A4U88_RS09635 0cb94dfa733e27dc6448392946bda1b3 843 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 298 308 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS09635 0cb94dfa733e27dc6448392946bda1b3 843 Pfam PF13953 PapC C-terminal domain 764 829 7.7E-22 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS09635 0cb94dfa733e27dc6448392946bda1b3 843 Pfam PF00577 Outer membrane usher protein 186 755 5.1E-143 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF48592 406 521 9.16E-77 T 25-04-2017 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF48592 7 134 9.16E-77 T 25-04-2017 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 5.4E-93 T 25-04-2017 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF54849 137 203 9.39E-25 T 25-04-2017 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 4.1E-255 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 Gene3D G3DSA:3.50.7.10 189 368 4.4E-98 T 25-04-2017 IPR027409 GroEL-like apical domain A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 Gene3D G3DSA:1.10.560.10 3 188 4.9E-48 T 25-04-2017 IPR027413 GroEL-like equatorial domain A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 25-04-2017 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 Gene3D G3DSA:1.10.560.10 369 518 1.8E-38 T 25-04-2017 IPR027413 GroEL-like equatorial domain A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 SUPERFAMILY SSF52029 185 376 4.19E-82 T 25-04-2017 IPR027409 GroEL-like apical domain A4U88_RS01525 a800ad2739ec10175862223aebe7f3be 548 Hamap MF_00600 60 kDa chaperonin [groL]. 2 547 41.567 T 25-04-2017 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 A4U88_RS18080 45e01a1ebfc91cff9e12d492524bfda2 317 Gene3D G3DSA:3.20.20.100 1 314 1.0E-94 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS18080 45e01a1ebfc91cff9e12d492524bfda2 317 Pfam PF00248 Aldo/keto reductase family 16 314 1.3E-71 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS18080 45e01a1ebfc91cff9e12d492524bfda2 317 PRINTS PR00069 Aldo-keto reductase signature 110 128 2.2E-6 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS18080 45e01a1ebfc91cff9e12d492524bfda2 317 PRINTS PR00069 Aldo-keto reductase signature 141 158 2.2E-6 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS18080 45e01a1ebfc91cff9e12d492524bfda2 317 SUPERFAMILY SSF51430 1 314 3.67E-94 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS09285 c274877d79fd0231110ab724ea282c3a 129 Pfam PF07233 Protein of unknown function (DUF1425) 38 128 2.5E-26 T 25-04-2017 IPR010824 Protein of unknown function DUF1425 A4U88_RS19210 f75fe255092b7fae291034dcc036b344 382 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 379 9.1E-172 T 25-04-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS19210 f75fe255092b7fae291034dcc036b344 382 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 5 381 42.983 T 25-04-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS19210 f75fe255092b7fae291034dcc036b344 382 Pfam PF02684 Lipid-A-disaccharide synthetase 8 376 7.2E-144 T 25-04-2017 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 A4U88_RS19210 f75fe255092b7fae291034dcc036b344 382 SUPERFAMILY SSF53756 8 301 1.62E-25 T 25-04-2017 A4U88_RS19210 f75fe255092b7fae291034dcc036b344 382 Gene3D G3DSA:3.40.50.2000 171 353 8.2E-4 T 25-04-2017 A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 Pfam PF03466 LysR substrate binding domain 95 291 4.3E-18 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 SUPERFAMILY SSF46785 8 91 1.69E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 SUPERFAMILY SSF53850 93 295 1.76E-22 T 25-04-2017 A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 Gene3D G3DSA:1.10.10.10 7 92 3.1E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 Gene3D G3DSA:3.40.190.10 94 215 1.1E-9 T 25-04-2017 A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21215 2df66beab907a4ac135bf229cc4bdac1 298 Gene3D G3DSA:3.40.190.10 234 263 5.1E-4 T 25-04-2017 A4U88_RS10305 538e4d7886831dca5462088be46fc893 435 Pfam PF10100 Uncharacterized protein conserved in bacteria (DUF2338) 7 431 8.3E-163 T 25-04-2017 IPR016935 Protein of unknown function DUF2338 A4U88_RS10305 538e4d7886831dca5462088be46fc893 435 Gene3D G3DSA:3.40.50.720 8 121 9.9E-6 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11110 2db03e83f12c420c05c33178f9672937 221 Gene3D G3DSA:3.40.30.10 43 220 5.9E-33 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS11110 2db03e83f12c420c05c33178f9672937 221 Pfam PF00578 AhpC/TSA family 50 197 1.9E-27 T 25-04-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 A4U88_RS11110 2db03e83f12c420c05c33178f9672937 221 SUPERFAMILY SSF52833 47 220 3.7E-32 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Gene3D G3DSA:3.40.50.1000 641 781 4.1E-58 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Gene3D G3DSA:3.40.50.1000 485 528 4.1E-58 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF56784 571 820 3.81E-60 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF56784 512 532 3.81E-60 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Pfam PF00403 Heavy-metal-associated domain 19 77 6.1E-14 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Pfam PF00403 Heavy-metal-associated domain 85 144 1.0E-11 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Pfam PF00122 E1-E2 ATPase 283 505 8.4E-68 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 245 822 1.3E-189 T 25-04-2017 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 227 823 8.3E-177 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 284 791 2.0E-90 T 25-04-2017 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF81665 762 801 2.35E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF81665 413 508 2.35E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF81665 278 316 2.35E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Gene3D G3DSA:3.30.70.100 81 164 1.5E-21 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 362 376 6.1E-29 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 713 732 6.1E-29 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 514 528 6.1E-29 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 649 6.1E-29 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 660 670 6.1E-29 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 736 748 6.1E-29 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF55008 81 148 4.84E-19 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Gene3D G3DSA:2.70.150.10 250 413 2.1E-33 T 25-04-2017 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF55008 15 79 1.57E-18 T 25-04-2017 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 SUPERFAMILY SSF81653 315 412 2.22E-28 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 516 522 - T 25-04-2017 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Gene3D G3DSA:3.30.70.100 16 79 3.5E-24 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Gene3D G3DSA:3.40.1110.10 529 640 4.4E-24 T 25-04-2017 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 ProSitePatterns PS01047 Heavy-metal-associated domain. 87 116 - T 25-04-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 ProSitePatterns PS01047 Heavy-metal-associated domain. 20 49 - T 25-04-2017 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 17 78 9.8E-12 T 25-04-2017 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 83 145 5.5E-10 T 25-04-2017 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 435 449 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 747 761 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 230 249 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 497 512 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 786 800 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 282 301 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 PRINTS PR00943 Copper-transporting ATPase signature 690 707 9.2E-12 T 25-04-2017 A4U88_RS12045 da98b1076702910e8903a29709c2c502 851 Pfam PF00702 haloacid dehalogenase-like hydrolase 511 727 2.5E-45 T 25-04-2017 A4U88_RS20980 caf712cc719854473357adb0a1f93c1c 435 Gene3D G3DSA:2.40.320.10 1 210 1.9E-37 T 25-04-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 A4U88_RS20980 caf712cc719854473357adb0a1f93c1c 435 SMART SM01118 2 202 2.5E-38 T 25-04-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 A4U88_RS20980 caf712cc719854473357adb0a1f93c1c 435 Pfam PF01928 CYTH domain 4 196 9.8E-32 T 25-04-2017 IPR023577 CYTH domain Reactome: R-HSA-196819 A4U88_RS20980 caf712cc719854473357adb0a1f93c1c 435 SUPERFAMILY SSF55154 1 218 9.81E-52 T 25-04-2017 IPR033469 CYTH-like domain Reactome: R-HSA-196819 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 352 460 1.1E-15 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 Gene3D G3DSA:1.10.287.130 233 302 6.8E-11 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 305 1.2E-12 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 SUPERFAMILY SSF47384 225 307 6.67E-15 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 SMART SM00387 351 462 3.0E-28 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 Gene3D G3DSA:3.30.565.10 308 459 7.3E-32 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 SMART SM00388 241 306 5.0E-10 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 417 9.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 403 9.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 9.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 446 459 9.2E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS19975 f32b8f4be55a5143caa405b9859a09ef 468 SUPERFAMILY SSF55874 296 460 9.82E-35 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 284 2.6E-55 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 Gene3D G3DSA:3.40.50.720 119 287 2.0E-59 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 177 - T 25-04-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 SUPERFAMILY SSF52283 7 138 1.83E-28 T 25-04-2017 A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 Gene3D G3DSA:3.40.50.720 7 118 3.6E-28 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 19 312 8.0E-20 T 25-04-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 A4U88_RS19820 106b0d4359bdbba1f392c08176f00946 316 SUPERFAMILY SSF51735 104 285 2.11E-54 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16960 41529aab2652c6a112019803904f54b7 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 197 3.0E-13 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS16960 41529aab2652c6a112019803904f54b7 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 81 7.7E-12 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS16960 41529aab2652c6a112019803904f54b7 209 SUPERFAMILY SSF47616 78 205 9.28E-38 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS16960 41529aab2652c6a112019803904f54b7 209 SUPERFAMILY SSF52833 1 84 3.93E-21 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS16960 41529aab2652c6a112019803904f54b7 209 Gene3D G3DSA:3.40.30.10 1 83 2.6E-27 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS16960 41529aab2652c6a112019803904f54b7 209 Gene3D G3DSA:1.20.1050.10 84 201 3.5E-49 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS04110 6e220580f41e783b35d4c01838dfe5d9 267 Pfam PF13230 Glutamine amidotransferases class-II 1 254 1.8E-114 T 25-04-2017 IPR026869 Putative glutamine amidotransferase type 2 A4U88_RS04110 6e220580f41e783b35d4c01838dfe5d9 267 SUPERFAMILY SSF56235 2 253 7.39E-52 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS04110 6e220580f41e783b35d4c01838dfe5d9 267 Gene3D G3DSA:3.60.20.10 1 252 4.7E-67 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 Gene3D G3DSA:3.90.76.10 133 267 6.3E-20 T 25-04-2017 A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 177 306 1.4E-17 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 6.9E-42 T 25-04-2017 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 SUPERFAMILY SSF53850 117 549 7.06E-64 T 25-04-2017 A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 Gene3D G3DSA:3.40.190.10 268 307 8.5E-7 T 25-04-2017 A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 SUPERFAMILY SSF46785 4 56 7.96E-6 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 552 65.923 T 25-04-2017 IPR023767 Transcriptional regulator SgrR A4U88_RS03250 d43157dea93ad30bca4cb9e18fcca881 553 Gene3D G3DSA:1.10.10.10 5 56 4.9E-5 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07470 c74462f90c5d3a9bf7a8a8ae9a7882d2 155 SUPERFAMILY SSF46785 13 130 3.02E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07470 c74462f90c5d3a9bf7a8a8ae9a7882d2 155 Pfam PF01638 HxlR-like helix-turn-helix 23 110 1.8E-20 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS07470 c74462f90c5d3a9bf7a8a8ae9a7882d2 155 Gene3D G3DSA:1.10.10.10 11 112 9.3E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05625 3e7b8de98e426dc3552a2bef16092be9 156 Gene3D G3DSA:3.40.1280.10 2 155 1.5E-52 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS05625 3e7b8de98e426dc3552a2bef16092be9 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 1.6E-81 T 25-04-2017 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS05625 3e7b8de98e426dc3552a2bef16092be9 156 SUPERFAMILY SSF75217 2 154 6.28E-48 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS05625 3e7b8de98e426dc3552a2bef16092be9 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 2.2E-46 T 25-04-2017 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS05625 3e7b8de98e426dc3552a2bef16092be9 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 26.129 T 25-04-2017 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS05625 3e7b8de98e426dc3552a2bef16092be9 156 PIRSF PIRSF004505 1 155 7.8E-40 T 25-04-2017 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 PIRSF PIRSF006272 1 164 2.3E-73 T 25-04-2017 IPR005587 Uncharacterised protein family UPF0304, YfbU A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 Gene3D G3DSA:1.10.3190.10 53 164 1.9E-48 T 25-04-2017 IPR023146 YfbU, alpha-helical bundle domain A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 1.0E-86 T 25-04-2017 IPR005587 Uncharacterised protein family UPF0304, YfbU A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 Gene3D G3DSA:1.10.287.680 1 52 2.4E-30 T 25-04-2017 IPR023145 YfbU, helix-hairpin domain A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 Pfam PF03887 YfbU domain 1 164 2.9E-67 T 25-04-2017 IPR005587 Uncharacterised protein family UPF0304, YfbU A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 37.436 T 25-04-2017 IPR005587 Uncharacterised protein family UPF0304, YfbU A4U88_RS16900 aadbca05d2d2c1b7e72237dc3aa1c3dd 164 SUPERFAMILY SSF116960 1 164 2.48E-66 T 25-04-2017 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Pfam PF00158 Sigma-54 interaction domain 224 393 7.1E-63 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 12 526 1.5E-228 T 25-04-2017 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0005737|GO:0019629 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Gene3D G3DSA:3.40.50.300 225 399 2.6E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Gene3D G3DSA:1.20.5.170 180 224 2.3E-13 T 25-04-2017 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 444 453 - T 25-04-2017 IPR025944 Sigma-54 interaction domain, conserved site A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 SUPERFAMILY SSF159800 14 196 5.1E-48 T 25-04-2017 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Gene3D G3DSA:3.40.50.10660 102 178 1.6E-32 T 25-04-2017 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 SMART SM00382 243 399 3.6E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 SUPERFAMILY SSF46689 444 526 2.93E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Gene3D G3DSA:1.10.10.60 451 526 1.5E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 313 328 - T 25-04-2017 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 SUPERFAMILY SSF52540 223 463 1.67E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Pfam PF06506 Propionate catabolism activator 40 197 8.0E-47 T 25-04-2017 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Gene3D G3DSA:3.40.50.2300 6 101 3.8E-44 T 25-04-2017 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Gene3D G3DSA:1.10.8.60 400 450 4.4E-17 T 25-04-2017 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 Pfam PF02954 Bacterial regulatory protein, Fis family 497 526 4.0E-11 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 510 528 4.5E-6 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS07100 6877ed20d363acc566f03f87a5c95742 528 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 493 510 4.5E-6 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 Gene3D G3DSA:3.40.50.300 361 520 1.9E-28 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 Gene3D G3DSA:3.40.50.300 12 259 3.2E-37 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 Pfam PF00005 ABC transporter 36 175 1.2E-18 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 Pfam PF00005 ABC transporter 366 487 6.5E-16 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 Gene3D G3DSA:3.40.50.300 277 308 7.9E-4 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 SUPERFAMILY SSF52540 22 228 2.87E-37 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 SUPERFAMILY SSF52540 360 519 8.5E-32 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 SMART SM00382 366 532 4.4E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS21110 2ec958ac6345fcbc3584baecf49d8209 539 SMART SM00382 34 219 3.8E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 SUPERFAMILY SSF53474 193 265 4.12E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 SUPERFAMILY SSF53474 7 135 4.12E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 6.2E-9 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 206 220 6.2E-9 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 6.2E-9 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 Pfam PF12146 Serine aminopeptidase, S33 25 251 3.2E-57 T 25-04-2017 IPR022742 Serine aminopeptidase, S33 A4U88_RS02615 ea07fd5cdb5df8aae378084cab0bf8de 268 Gene3D G3DSA:3.40.50.1820 5 266 1.8E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 Pfam PF07702 UTRA domain 94 232 1.5E-31 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 Gene3D G3DSA:1.10.10.10 4 69 1.1E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 SMART SM00866 94 233 1.3E-26 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 SUPERFAMILY SSF64288 61 236 1.38E-37 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 4.6E-8 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 4.6E-8 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 TIGRFAM TIGR03337 phnR: phosphonate utilization transcriptional regulator PhnR 9 238 2.4E-115 T 25-04-2017 IPR017722 Phosphonate utilization transcriptional regulator PhnR A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 Gene3D G3DSA:3.40.1410.10 70 237 8.8E-38 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 SMART SM00345 14 73 1.8E-19 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 SUPERFAMILY SSF46785 1 77 2.18E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10370 83af375ed4ee7cb5bdc02cec6e31252b 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 73 1.2E-19 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02870 89f3a7dac73d8c8c317563589cef8206 260 SUPERFAMILY SSF51556 5 257 5.75E-77 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS02870 89f3a7dac73d8c8c317563589cef8206 260 PIRSF PIRSF005902 1 260 3.0E-68 T 25-04-2017 IPR001130 TatD family GO:0016788 A4U88_RS02870 89f3a7dac73d8c8c317563589cef8206 260 Pfam PF01026 TatD related DNase 6 256 2.1E-67 T 25-04-2017 IPR001130 TatD family GO:0016788 A4U88_RS02870 89f3a7dac73d8c8c317563589cef8206 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 25-04-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 A4U88_RS02870 89f3a7dac73d8c8c317563589cef8206 260 Gene3D G3DSA:3.20.20.140 3 257 2.7E-78 T 25-04-2017 A4U88_RS24245 416a808f4fc13ba68768cf7d39153fcd 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.6E-27 T 25-04-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS24245 416a808f4fc13ba68768cf7d39153fcd 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.163 T 25-04-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS24245 416a808f4fc13ba68768cf7d39153fcd 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 31 4.0E-11 T 25-04-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS24245 416a808f4fc13ba68768cf7d39153fcd 46 Pfam PF00468 Ribosomal protein L34 1 44 1.7E-24 T 25-04-2017 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS24245 416a808f4fc13ba68768cf7d39153fcd 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 25-04-2017 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS14395 5d0d3eb25cc638c402d33d75b8b923f0 89 PIRSF PIRSF004669 1 89 8.6E-33 T 25-04-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 A4U88_RS14395 5d0d3eb25cc638c402d33d75b8b923f0 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 2.6E-30 T 25-04-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 A4U88_RS14395 5d0d3eb25cc638c402d33d75b8b923f0 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 1.1E-33 T 25-04-2017 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 A4U88_RS14395 5d0d3eb25cc638c402d33d75b8b923f0 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.5E-23 T 25-04-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 A4U88_RS14395 5d0d3eb25cc638c402d33d75b8b923f0 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.5E-23 T 25-04-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 A4U88_RS14395 5d0d3eb25cc638c402d33d75b8b923f0 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.5E-23 T 25-04-2017 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 A4U88_RS06805 54fa3d80d43019b94eea1c291623af31 299 Gene3D G3DSA:1.10.3720.10 86 282 4.6E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06805 54fa3d80d43019b94eea1c291623af31 299 SUPERFAMILY SSF161098 86 275 2.94E-25 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06805 54fa3d80d43019b94eea1c291623af31 299 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 271 9.5E-7 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06805 54fa3d80d43019b94eea1c291623af31 299 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 32 283 4.1E-78 T 25-04-2017 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 Gene3D G3DSA:3.40.50.970 162 550 2.3E-79 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 Gene3D G3DSA:3.40.50.970 593 789 2.9E-24 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 932 2.0E-54 T 25-04-2017 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 SUPERFAMILY SSF52518 120 545 2.62E-88 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 PIRSF PIRSF000157 1 934 0.0 T 25-04-2017 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 SMART SM00861 593 786 4.4E-63 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 25-04-2017 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 8.4E-16 T 25-04-2017 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 8.0E-67 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 Pfam PF00676 Dehydrogenase E1 component 221 512 1.9E-49 T 25-04-2017 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 A4U88_RS05970 fc0bad86398a07d530a167fd10dd1159 935 SUPERFAMILY SSF52518 576 793 1.47E-51 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS23040 49d018d40527087e4b27ec2db63eb811 141 Pfam PF00486 Transcriptional regulatory protein, C terminal 54 130 1.5E-10 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS23040 49d018d40527087e4b27ec2db63eb811 141 Gene3D G3DSA:1.10.10.10 39 133 4.4E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23040 49d018d40527087e4b27ec2db63eb811 141 SMART SM00862 58 130 2.7E-4 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS23040 49d018d40527087e4b27ec2db63eb811 141 SUPERFAMILY SSF46894 48 131 6.24E-11 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 145 827 1.2E-289 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 225 250 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 280 299 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 522 548 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 551 570 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 591 610 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 361 385 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 197 217 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 PRINTS PR01439 Cellulose synthase subunit A signature 665 686 5.4E-58 T 25-04-2017 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 Gene3D G3DSA:3.90.550.10 273 505 9.9E-23 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 SUPERFAMILY SSF141371 694 781 3.73E-7 T 25-04-2017 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 SUPERFAMILY SSF53448 270 548 1.0E-51 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 Pfam PF00535 Glycosyl transferase family 2 276 445 5.1E-34 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS00480 04363644f4bc6bd0d77e82ac9902d1c0 867 Pfam PF07238 PilZ domain 692 788 1.0E-9 T 25-04-2017 IPR009875 PilZ domain GO:0035438 A4U88_RS22790 0bb78b1d927085eff54b4b29bf63c6a8 696 SUPERFAMILY SSF51445 611 685 5.97E-150 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS22790 0bb78b1d927085eff54b4b29bf63c6a8 696 SUPERFAMILY SSF51445 143 573 5.97E-150 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS22790 0bb78b1d927085eff54b4b29bf63c6a8 696 Gene3D G3DSA:3.20.20.80 142 576 9.6E-168 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS22790 0bb78b1d927085eff54b4b29bf63c6a8 696 Gene3D G3DSA:3.20.20.80 615 689 9.6E-168 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS22790 0bb78b1d927085eff54b4b29bf63c6a8 696 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 101 688 1.8E-246 T 25-04-2017 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 A4U88_RS22790 0bb78b1d927085eff54b4b29bf63c6a8 696 Pfam PF02446 4-alpha-glucanotransferase 149 667 2.9E-133 T 25-04-2017 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 A4U88_RS21600 bdfe7d2dfcf3738fa0a6489e8150fb6f 489 Pfam PF00575 S1 RNA binding domain 38 109 4.3E-7 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS21600 bdfe7d2dfcf3738fa0a6489e8150fb6f 489 Pfam PF10150 Ribonuclease E/G family 124 393 5.9E-100 T 25-04-2017 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 A4U88_RS21600 bdfe7d2dfcf3738fa0a6489e8150fb6f 489 Gene3D G3DSA:2.40.50.140 30 128 1.7E-33 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS21600 bdfe7d2dfcf3738fa0a6489e8150fb6f 489 SUPERFAMILY SSF50249 39 128 3.62E-19 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS21600 bdfe7d2dfcf3738fa0a6489e8150fb6f 489 SMART SM00316 37 122 2.3E-9 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS21600 bdfe7d2dfcf3738fa0a6489e8150fb6f 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 5.1E-174 T 25-04-2017 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Gene3D G3DSA:3.10.560.10 165 244 4.3E-28 T 25-04-2017 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Pfam PF10531 SLBB domain 173 222 4.2E-8 T 25-04-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Pfam PF10531 SLBB domain 256 305 5.0E-4 T 25-04-2017 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Gene3D G3DSA:3.10.560.10 245 344 1.9E-32 T 25-04-2017 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Pfam PF02563 Polysaccharide biosynthesis/export protein 81 165 1.7E-28 T 25-04-2017 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Gene3D G3DSA:3.30.1950.10 90 164 5.1E-34 T 25-04-2017 A4U88_RS07670 0d3efc0353e222470a43e91e365d59d4 377 Gene3D G3DSA:1.20.5.70 346 377 1.5E-18 T 25-04-2017 A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 SUPERFAMILY SSF52518 4 184 1.24E-39 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 SUPERFAMILY SSF52518 364 533 3.22E-42 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 Gene3D G3DSA:3.40.50.970 2 179 1.5E-46 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 Gene3D G3DSA:3.40.50.970 372 531 4.4E-44 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 387 527 3.6E-30 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 Gene3D G3DSA:3.40.50.1220 188 371 3.1E-37 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 172 1.3E-41 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 SUPERFAMILY SSF52467 159 349 7.2E-35 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS20225 65cd18b172a05720536c3c029bf2a430 546 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 195 324 2.8E-23 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS23645 e810e77075da5f784cc04d85cf7e4e17 157 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 4.4E-72 T 25-04-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS23645 e810e77075da5f784cc04d85cf7e4e17 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 34.204 T 25-04-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS23645 e810e77075da5f784cc04d85cf7e4e17 157 PIRSF PIRSF029256 1 154 2.9E-70 T 25-04-2017 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS23645 e810e77075da5f784cc04d85cf7e4e17 157 SUPERFAMILY SSF75217 1 152 9.81E-45 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS23645 e810e77075da5f784cc04d85cf7e4e17 157 Pfam PF00588 SpoU rRNA Methylase family 2 142 2.8E-33 T 25-04-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 A4U88_RS23645 e810e77075da5f784cc04d85cf7e4e17 157 Gene3D G3DSA:3.40.1280.10 1 153 1.3E-69 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 SUPERFAMILY SSF53613 7 290 2.34E-67 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 Pfam PF00294 pfkB family carbohydrate kinase 14 292 1.9E-64 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 Gene3D G3DSA:3.40.1190.20 37 309 2.6E-84 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 PIRSF PIRSF000535 2 311 4.8E-117 T 25-04-2017 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 9.4E-101 T 25-04-2017 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 A4U88_RS16335 55e10e59a3fa4724b26ac1767b02e219 313 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 4.1E-99 T 25-04-2017 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 A4U88_RS02435 d29f6e82b72afe402cb30093af4ecff6 263 Pfam PF00005 ABC transporter 28 167 1.6E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS02435 d29f6e82b72afe402cb30093af4ecff6 263 Gene3D G3DSA:3.40.50.300 4 218 6.1E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02435 d29f6e82b72afe402cb30093af4ecff6 263 SMART SM00382 37 249 1.7E-16 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS02435 d29f6e82b72afe402cb30093af4ecff6 263 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS02435 d29f6e82b72afe402cb30093af4ecff6 263 SUPERFAMILY SSF52540 9 222 4.07E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 502 2.2E-169 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PIRSF PIRSF002869 1 510 9.7E-179 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 33 52 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 357 376 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 52 68 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 157 178 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 259 285 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 409 426 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 PRINTS PR01806 Virulence factor MviN signature 133 157 1.3E-87 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS13680 76e729f3be262361d790d9a52be285b2 511 Pfam PF03023 MviN-like protein 28 478 1.6E-155 T 25-04-2017 IPR004268 Peptidoglycan biosynthesis protein MurJ A4U88_RS02590 3fc855d92f5f413c1abe69fd12934fd0 309 Gene3D G3DSA:1.10.10.10 14 94 1.9E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02590 3fc855d92f5f413c1abe69fd12934fd0 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 5.3E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02590 3fc855d92f5f413c1abe69fd12934fd0 309 SUPERFAMILY SSF53850 120 305 9.77E-20 T 25-04-2017 A4U88_RS02590 3fc855d92f5f413c1abe69fd12934fd0 309 SUPERFAMILY SSF46785 15 100 1.74E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02590 3fc855d92f5f413c1abe69fd12934fd0 309 Gene3D G3DSA:3.40.190.10 103 215 3.2E-11 T 25-04-2017 A4U88_RS02590 3fc855d92f5f413c1abe69fd12934fd0 309 Pfam PF03466 LysR substrate binding domain 101 305 3.6E-20 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20220 f3ed948dda189c741b469f67086839a3 250 Gene3D G3DSA:3.30.2010.10 64 146 1.7E-22 T 25-04-2017 A4U88_RS20220 f3ed948dda189c741b469f67086839a3 250 Pfam PF01435 Peptidase family M48 71 245 1.9E-25 T 25-04-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 A4U88_RS06975 ccc5178b964bb44dcc99f9dbe9685109 120 SUPERFAMILY SSF74653 38 120 9.16E-15 T 25-04-2017 A4U88_RS06975 ccc5178b964bb44dcc99f9dbe9685109 120 Pfam PF06519 TolA C-terminal 36 106 2.4E-12 T 25-04-2017 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 A4U88_RS06975 ccc5178b964bb44dcc99f9dbe9685109 120 Gene3D G3DSA:3.30.1150.10 38 120 1.5E-18 T 25-04-2017 A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 SMART SM00354 5 79 9.8E-5 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 Pfam PF13407 Periplasmic binding protein domain 116 322 4.8E-22 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 Gene3D G3DSA:1.10.260.40 4 50 2.0E-13 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 SUPERFAMILY SSF53822 70 335 8.72E-32 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 1.2E-8 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 Gene3D G3DSA:3.40.50.2300 68 186 7.9E-10 T 25-04-2017 A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 Gene3D G3DSA:3.40.50.2300 187 322 4.3E-22 T 25-04-2017 A4U88_RS10005 832836314966239bf22bd9aee2f03e60 343 SUPERFAMILY SSF47413 4 51 4.5E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 SUPERFAMILY SSF49503 439 553 1.47E-27 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 Gene3D G3DSA:2.60.40.420 171 309 3.1E-28 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 Gene3D G3DSA:2.60.40.420 407 554 4.8E-31 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 ProSitePatterns PS00080 Multicopper oxidases signature 2. 536 547 - T 25-04-2017 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 SUPERFAMILY SSF49503 33 169 6.9E-31 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 Gene3D G3DSA:2.60.40.420 32 170 7.7E-35 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 Pfam PF07731 Multicopper oxidase 442 554 6.5E-26 T 25-04-2017 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 Pfam PF07732 Multicopper oxidase 60 167 4.5E-30 T 25-04-2017 IPR011707 Multicopper oxidase, type 3 GO:0005507 A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 Pfam PF00394 Multicopper oxidase 227 298 4.7E-5 T 25-04-2017 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 SUPERFAMILY SSF49503 172 293 2.78E-28 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS20440 254aaf6a276cf4872f73458a7422f5e1 555 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 28 2.3E-4 T 25-04-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 Gene3D G3DSA:3.40.640.10 88 358 6.7E-75 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 59 405 1.0E-40 T 25-04-2017 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 117 136 6.8E-11 T 25-04-2017 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 344 359 6.8E-11 T 25-04-2017 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 387 406 6.8E-11 T 25-04-2017 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 78 97 6.8E-11 T 25-04-2017 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 Gene3D G3DSA:3.90.1150.10 359 468 1.8E-29 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS14945 d313b77be510f771f09eeeb99fa4ec2b 471 SUPERFAMILY SSF53383 8 468 2.45E-98 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 14 169 3.2E-56 T 25-04-2017 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 Hamap MF_01932 AMP nucleosidase [amn]. 5 487 58.444 T 25-04-2017 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 SUPERFAMILY SSF53167 11 487 5.89E-156 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 Gene3D G3DSA:3.40.50.1580 177 469 3.8E-114 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 13 487 1.9E-234 T 25-04-2017 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 Pfam PF01048 Phosphorylase superfamily 272 433 4.0E-19 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS15670 9e1b7ba1b9a36dd76a0f881aaf944b84 487 Gene3D G3DSA:3.30.1730.10 7 170 4.3E-64 T 25-04-2017 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 9.9E-79 T 25-04-2017 IPR020536 Thil, AANH domain GO:0004810 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 373 7.0E-136 T 25-04-2017 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 Gene3D G3DSA:3.40.50.620 173 333 4.6E-38 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 482 230.438 T 25-04-2017 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 SUPERFAMILY SSF52821 405 481 1.01E-9 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 Pfam PF02926 THUMP domain 29 162 4.3E-24 T 25-04-2017 IPR004114 THUMP domain GO:0003723 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 SUPERFAMILY SSF143437 1 173 8.55E-47 T 25-04-2017 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 Gene3D G3DSA:3.40.250.10 397 480 4.2E-8 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 SUPERFAMILY SSF52402 174 372 1.12E-42 T 25-04-2017 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 SMART SM00981 75 165 2.9E-22 T 25-04-2017 IPR004114 THUMP domain GO:0003723 A4U88_RS04865 e9be5d8092886aab42ad0f17b077ef1a 482 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 383 482 9.6E-43 T 25-04-2017 IPR026340 Thiazole biosynthesis domain GO:0052837 A4U88_RS11655 e438b53fd1eaab1ae74306a840388e1f 64 Gene3D G3DSA:1.10.1220.10 2 46 4.1E-10 T 25-04-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 A4U88_RS11655 e438b53fd1eaab1ae74306a840388e1f 64 Pfam PF01402 Ribbon-helix-helix protein, copG family 7 43 4.1E-5 T 25-04-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 A4U88_RS11655 e438b53fd1eaab1ae74306a840388e1f 64 SUPERFAMILY SSF47598 2 46 1.37E-10 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 Gene3D G3DSA:1.10.3720.10 411 499 6.5E-11 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 Gene3D G3DSA:1.10.3720.10 35 54 6.5E-11 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 Gene3D G3DSA:1.10.3720.10 500 716 2.7E-32 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 444 713 2.0E-11 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 SUPERFAMILY SSF161098 494 705 9.42E-20 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 Gene3D G3DSA:2.130.10.10 223 372 5.7E-6 T 25-04-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 SUPERFAMILY SSF50969 97 370 9.42E-11 T 25-04-2017 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like A4U88_RS18025 3ffcc27b9400679e9a8db397963ce8ac 723 SUPERFAMILY SSF161098 406 487 1.21E-6 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 Pfam PF07690 Major Facilitator Superfamily 253 427 7.8E-12 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 Gene3D G3DSA:1.20.1250.20 241 428 4.5E-21 T 25-04-2017 A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 Gene3D G3DSA:1.20.1250.20 13 222 1.5E-24 T 25-04-2017 A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 SUPERFAMILY SSF103473 9 430 9.42E-67 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 Pfam PF00083 Sugar (and other) transporter 19 227 1.3E-29 T 25-04-2017 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 A4U88_RS10175 42d05e8137555539a7b27d3d7767a8fa 434 ProSitePatterns PS00216 Sugar transport proteins signature 1. 296 312 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS09560 72d03bfc77d938a327a47a6deb407706 109 Gene3D G3DSA:3.30.530.20 9 96 1.6E-10 T 25-04-2017 IPR023393 START-like domain A4U88_RS09560 72d03bfc77d938a327a47a6deb407706 109 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 21 82 4.1E-6 T 25-04-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 A4U88_RS09560 72d03bfc77d938a327a47a6deb407706 109 SUPERFAMILY SSF55961 8 97 2.09E-15 T 25-04-2017 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 SMART SM00862 149 225 3.4E-21 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 225 5.0E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 Pfam PF00072 Response regulator receiver domain 3 111 6.3E-21 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 Gene3D G3DSA:3.40.50.2300 1 125 2.9E-35 T 25-04-2017 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 Gene3D G3DSA:1.10.10.10 126 225 2.1E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 SMART SM00448 1 111 5.7E-37 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 SUPERFAMILY SSF46894 127 225 2.58E-24 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS17630 d158f65d5eb2236544ffc1c1baf12f19 226 SUPERFAMILY SSF52172 1 123 1.57E-35 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS02745 1267c8383297f30f853a69d7be735173 281 SUPERFAMILY SSF56529 62 279 4.71E-80 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02745 1267c8383297f30f853a69d7be735173 281 Gene3D G3DSA:3.90.850.10 70 279 7.7E-87 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02745 1267c8383297f30f853a69d7be735173 281 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 72 277 2.3E-67 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.543 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 1.3E-210 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 Gene3D G3DSA:1.10.730.10 582 678 4.8E-4 T 25-04-2017 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 6.7E-37 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 6.7E-37 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 6.7E-37 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 6.7E-37 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 6.7E-37 T 25-04-2017 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 Pfam PF05746 DALR anticodon binding domain 582 679 2.5E-7 T 25-04-2017 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 A4U88_RS00135 28ead81c95fd8e21c296f3bec6e88545 689 SUPERFAMILY SSF109604 339 539 1.78E-15 T 25-04-2017 A4U88_RS11770 3d93586f72ee9364ac7fd6df1751a893 104 Gene3D G3DSA:2.40.128.10 3 103 1.2E-31 T 25-04-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 A4U88_RS11770 3d93586f72ee9364ac7fd6df1751a893 104 SUPERFAMILY SSF50882 3 102 7.32E-22 T 25-04-2017 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 A4U88_RS11770 3d93586f72ee9364ac7fd6df1751a893 104 Pfam PF02974 Protease inhibitor Inh 8 93 2.9E-18 T 25-04-2017 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 A4U88_RS11770 3d93586f72ee9364ac7fd6df1751a893 104 PRINTS PR01274 Metalloprotease inhibitor signature 65 78 1.1E-8 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS11770 3d93586f72ee9364ac7fd6df1751a893 104 PRINTS PR01274 Metalloprotease inhibitor signature 3 19 1.1E-8 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS11770 3d93586f72ee9364ac7fd6df1751a893 104 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 13 92 1.0E-12 T 25-04-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 A4U88_RS20595 5e25693d09801580f66c0a4715c23765 380 Pfam PF06969 HemN C-terminal domain 304 364 3.6E-10 T 25-04-2017 IPR010723 HemN, C-terminal A4U88_RS20595 5e25693d09801580f66c0a4715c23765 380 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 1.9E-142 T 25-04-2017 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 A4U88_RS20595 5e25693d09801580f66c0a4715c23765 380 SMART SM00729 6 223 1.4E-53 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS20595 5e25693d09801580f66c0a4715c23765 380 Pfam PF04055 Radical SAM superfamily 11 179 9.3E-19 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS20595 5e25693d09801580f66c0a4715c23765 380 Gene3D G3DSA:3.80.30.20 7 239 2.7E-29 T 25-04-2017 IPR023404 Radical SAM, alpha/beta horseshoe A4U88_RS20595 5e25693d09801580f66c0a4715c23765 380 SUPERFAMILY SSF102114 5 376 6.54E-111 T 25-04-2017 A4U88_RS13505 d4f48795c26da78def9c4ebeed688312 196 PIRSF PIRSF004982 7 192 5.9E-50 T 25-04-2017 IPR004658 Outer membrane lipoprotein Slp GO:0019867 A4U88_RS13505 d4f48795c26da78def9c4ebeed688312 196 Pfam PF03843 Outer membrane lipoprotein Slp family 22 169 4.6E-47 T 25-04-2017 IPR004658 Outer membrane lipoprotein Slp GO:0019867 A4U88_RS13505 d4f48795c26da78def9c4ebeed688312 196 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 17 192 2.7E-64 T 25-04-2017 IPR004658 Outer membrane lipoprotein Slp GO:0019867 A4U88_RS20255 85bd2da4b5ff80bb15ccf41555ccd531 418 Gene3D G3DSA:1.20.1250.20 20 222 7.0E-35 T 25-04-2017 A4U88_RS20255 85bd2da4b5ff80bb15ccf41555ccd531 418 Gene3D G3DSA:1.20.1250.20 225 418 6.6E-34 T 25-04-2017 A4U88_RS20255 85bd2da4b5ff80bb15ccf41555ccd531 418 Pfam PF07690 Major Facilitator Superfamily 33 380 5.8E-45 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS20255 85bd2da4b5ff80bb15ccf41555ccd531 418 SUPERFAMILY SSF103473 15 417 6.54E-74 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 SUPERFAMILY SSF46785 3 105 9.45E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 SMART SM00418 11 89 4.3E-19 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 Gene3D G3DSA:1.10.10.10 6 106 4.6E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 13 28 8.0E-6 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 8.0E-6 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 8.0E-6 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS12365 fe57bd70de68c59153803e1c49103829 115 Pfam PF12840 Helix-turn-helix domain 10 69 2.5E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20985 cf9a41f78a7f6db3257aac89a285c087 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 8.7E-56 T 25-04-2017 IPR016476 SH3 domain protein A4U88_RS20985 cf9a41f78a7f6db3257aac89a285c087 206 PIRSF PIRSF006158 1 205 5.9E-72 T 25-04-2017 IPR016476 SH3 domain protein A4U88_RS20985 cf9a41f78a7f6db3257aac89a285c087 206 SMART SM00287 23 89 2.2E-9 T 25-04-2017 IPR003646 SH3-like domain, bacterial-type A4U88_RS20985 cf9a41f78a7f6db3257aac89a285c087 206 Pfam PF08239 Bacterial SH3 domain 34 85 8.2E-9 T 25-04-2017 IPR003646 SH3-like domain, bacterial-type A4U88_RS20985 cf9a41f78a7f6db3257aac89a285c087 206 Gene3D G3DSA:1.20.1170.10 90 181 5.7E-4 T 25-04-2017 A4U88_RS06860 8bf8f20f2f40405e3f58dbc20053113e 232 Pfam PF00005 ABC transporter 17 161 1.0E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06860 8bf8f20f2f40405e3f58dbc20053113e 232 Gene3D G3DSA:3.40.50.300 1 221 4.2E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06860 8bf8f20f2f40405e3f58dbc20053113e 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 6.5E-106 T 25-04-2017 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE A4U88_RS06860 8bf8f20f2f40405e3f58dbc20053113e 232 SMART SM00382 26 211 7.2E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06860 8bf8f20f2f40405e3f58dbc20053113e 232 SUPERFAMILY SSF52540 2 220 5.1E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00210 7f58d2f8cda814d7b8ccd364b86d73f8 211 SUPERFAMILY SSF81342 4 208 1.73E-55 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS00210 7f58d2f8cda814d7b8ccd364b86d73f8 211 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 204 2.4E-67 T 25-04-2017 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 A4U88_RS00210 7f58d2f8cda814d7b8ccd364b86d73f8 211 Pfam PF01292 Prokaryotic cytochrome b561 9 184 5.7E-22 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS00210 7f58d2f8cda814d7b8ccd364b86d73f8 211 Gene3D G3DSA:1.20.950.20 1 209 8.1E-74 T 25-04-2017 A4U88_RS15555 54aaac55904e98500c694152b3494329 148 Pfam PF04965 Gene 25-like lysozyme 27 121 2.0E-12 T 25-04-2017 IPR007048 GpW/Gp25/anti-adapter protein IraD A4U88_RS06385 b2e71de95a1999443e94305a561e377d 343 Gene3D G3DSA:3.40.190.10 269 323 8.2E-37 T 25-04-2017 A4U88_RS06385 b2e71de95a1999443e94305a561e377d 343 Gene3D G3DSA:3.40.190.10 1 123 8.2E-37 T 25-04-2017 A4U88_RS06385 b2e71de95a1999443e94305a561e377d 343 Gene3D G3DSA:3.40.190.10 129 268 8.3E-51 T 25-04-2017 A4U88_RS06385 b2e71de95a1999443e94305a561e377d 343 PIRSF PIRSF002825 1 340 1.7E-71 T 25-04-2017 IPR026045 Ferric binding protein A4U88_RS06385 b2e71de95a1999443e94305a561e377d 343 Pfam PF13343 Bacterial extracellular solute-binding protein 76 290 1.3E-34 T 25-04-2017 A4U88_RS06385 b2e71de95a1999443e94305a561e377d 343 SUPERFAMILY SSF53850 25 330 2.47E-72 T 25-04-2017 A4U88_RS17395 a695f4a349311eda1376c8054e3c191a 414 SUPERFAMILY SSF51197 3 413 8.93E-147 T 25-04-2017 A4U88_RS17395 a695f4a349311eda1376c8054e3c191a 414 Gene3D G3DSA:2.60.120.330 6 413 3.7E-147 T 25-04-2017 IPR027443 Isopenicillin N synthase-like A4U88_RS17395 a695f4a349311eda1376c8054e3c191a 414 Pfam PF07350 Protein of unknown function (DUF1479) 8 413 2.4E-138 T 25-04-2017 IPR010856 Protein of unknown function DUF1479 A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 38.159 T 25-04-2017 IPR023071 Transcriptional regulator, SlyA A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 25-04-2017 IPR023187 Transcriptional regulator MarR-type, conserved site A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 Pfam PF01047 MarR family 29 87 5.0E-17 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 SUPERFAMILY SSF46785 4 140 3.02E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 Gene3D G3DSA:1.10.10.10 3 138 1.1E-34 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 5.0E-26 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 5.0E-26 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 5.0E-26 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 5.0E-26 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS10860 165d5f3b3c1d467ea8663e455667ed48 143 SMART SM00347 22 123 3.3E-27 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS13970 8ac349fe70aa058251d6185c9a7cfd3e 316 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 30 79 2.3E-12 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS13970 8ac349fe70aa058251d6185c9a7cfd3e 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 312 2.8E-30 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13970 8ac349fe70aa058251d6185c9a7cfd3e 316 Gene3D G3DSA:1.10.3720.10 98 309 2.0E-23 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13970 8ac349fe70aa058251d6185c9a7cfd3e 316 SUPERFAMILY SSF161098 98 295 4.19E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 Pfam PF13353 4Fe-4S single cluster domain 23 124 4.7E-7 T 25-04-2017 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 5 328 37.751 T 25-04-2017 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 20 31 - T 25-04-2017 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 Pfam PF04055 Radical SAM superfamily 19 180 2.0E-29 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 SMART SM00729 14 218 2.7E-7 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 SUPERFAMILY SSF102114 5 277 1.7E-72 T 25-04-2017 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 Pfam PF06463 Molybdenum Cofactor Synthesis C 185 311 2.8E-38 T 25-04-2017 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 Gene3D G3DSA:3.20.20.70 4 304 8.9E-75 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS06300 63cc7e1e19540940a8c1ed9609b5e775 328 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 5 328 2.8E-106 T 25-04-2017 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS14310 d7284cfce647b70beeb5f50ec978085a 136 PIRSF PIRSF039090 1 136 1.9E-45 T 25-04-2017 IPR003713 Flagellar protein FliS GO:0044780 A4U88_RS14310 d7284cfce647b70beeb5f50ec978085a 136 Gene3D G3DSA:1.20.120.340 8 131 2.0E-46 T 25-04-2017 IPR003713 Flagellar protein FliS GO:0044780 A4U88_RS14310 d7284cfce647b70beeb5f50ec978085a 136 SUPERFAMILY SSF101116 8 130 3.53E-41 T 25-04-2017 IPR003713 Flagellar protein FliS GO:0044780 A4U88_RS14310 d7284cfce647b70beeb5f50ec978085a 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 1 125 1.2E-39 T 25-04-2017 IPR003713 Flagellar protein FliS GO:0044780 A4U88_RS14310 d7284cfce647b70beeb5f50ec978085a 136 Pfam PF02561 Flagellar protein FliS 8 125 1.2E-40 T 25-04-2017 IPR003713 Flagellar protein FliS GO:0044780 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 SUPERFAMILY SSF51569 5 218 1.26E-77 T 25-04-2017 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 6 220 34.956 T 25-04-2017 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 8 216 3.9E-82 T 25-04-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 SMART SM01133 7 218 2.2E-91 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 Gene3D G3DSA:3.20.20.70 4 220 1.1E-87 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 Pfam PF01791 DeoC/LacD family aldolase 11 215 3.5E-17 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS08000 71f6df8909050d2e26726dc748ba10e9 226 PIRSF PIRSF001357 1 225 2.2E-72 T 25-04-2017 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 SUPERFAMILY SSF52540 9 225 1.74E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 SUPERFAMILY SSF50331 235 350 2.55E-22 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 SMART SM00382 23 206 9.9E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 Gene3D G3DSA:3.40.50.300 16 222 5.6E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 Gene3D G3DSA:2.40.50.100 278 348 6.3E-22 T 25-04-2017 A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 5.1E-152 T 25-04-2017 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 Pfam PF03459 TOBE domain 290 350 8.3E-17 T 25-04-2017 IPR005116 Transport-associated OB, type 1 A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 Pfam PF00005 ABC transporter 16 156 3.5E-28 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06215 de1b7684c84a2064444d3cfa5588826a 355 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 289 350 4.1E-18 T 25-04-2017 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 A4U88_RS07385 81eaaddc5372d2a6b3ab26a21e9865b7 175 Pfam PF00419 Fimbrial protein 28 175 2.4E-21 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07385 81eaaddc5372d2a6b3ab26a21e9865b7 175 Gene3D G3DSA:2.60.40.1090 25 175 2.2E-40 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07385 81eaaddc5372d2a6b3ab26a21e9865b7 175 SUPERFAMILY SSF49401 26 175 5.97E-33 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 SUPERFAMILY SSF46785 3 80 1.89E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 Gene3D G3DSA:3.40.190.10 91 174 8.2E-16 T 25-04-2017 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 Pfam PF03466 LysR substrate binding domain 87 293 2.0E-36 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.3E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 SUPERFAMILY SSF53850 89 294 4.71E-34 T 25-04-2017 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 7.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 7.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 7.0E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 Gene3D G3DSA:3.40.190.10 175 261 7.6E-17 T 25-04-2017 A4U88_RS21785 235933c5f5ea7705d6d750223f7fdcc0 305 Gene3D G3DSA:1.10.10.10 2 77 2.4E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 TIGRFAM TIGR02275 DHB_AMP_lig: (2,3-dihydroxybenzoyl)adenylate synthase 3 528 1.3E-260 T 25-04-2017 IPR011963 2,3-dihydroxybenzoate-AMP ligase GO:0008668|GO:0019290 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 521 6.5E-12 T 25-04-2017 IPR025110 AMP-binding enzyme C-terminal domain A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Gene3D G3DSA:3.40.50.980 197 354 1.7E-31 T 25-04-2017 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Gene3D G3DSA:3.30.300.30 433 537 1.1E-27 T 25-04-2017 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Gene3D G3DSA:2.30.38.10 357 432 1.9E-22 T 25-04-2017 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Gene3D G3DSA:3.40.50.980 173 196 2.5E-27 T 25-04-2017 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Gene3D G3DSA:3.40.50.980 24 136 2.5E-27 T 25-04-2017 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 Pfam PF00501 AMP-binding enzyme 35 438 6.3E-77 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS01385 cacff49aa11feb6e9d0c382f4113a1be 542 SUPERFAMILY SSF56801 14 534 1.57E-126 T 25-04-2017 A4U88_RS06705 a59047e8c5be9e3583cb7e951801874b 282 Pfam PF01163 RIO1 family 31 219 8.4E-40 T 25-04-2017 A4U88_RS06705 a59047e8c5be9e3583cb7e951801874b 282 Gene3D G3DSA:3.30.200.20 17 125 6.0E-10 T 25-04-2017 A4U88_RS06705 a59047e8c5be9e3583cb7e951801874b 282 SMART SM00090 5 234 8.1E-10 T 25-04-2017 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|Reactome: R-HSA-6791226 A4U88_RS06705 a59047e8c5be9e3583cb7e951801874b 282 Gene3D G3DSA:1.10.510.10 139 224 2.3E-17 T 25-04-2017 A4U88_RS06705 a59047e8c5be9e3583cb7e951801874b 282 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 25-04-2017 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|Reactome: R-HSA-6791226 A4U88_RS06705 a59047e8c5be9e3583cb7e951801874b 282 SUPERFAMILY SSF56112 19 212 5.25E-17 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS21520 25f3e4648bb90f31cdb871f308304f44 446 SUPERFAMILY SSF111283 14 445 4.58E-128 T 25-04-2017 A4U88_RS21520 25f3e4648bb90f31cdb871f308304f44 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 3.1E-54 T 25-04-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 A4U88_RS14970 edaa8360a3df93ca53cd748441cdfc47 90 SUPERFAMILY SSF52113 10 84 4.67E-10 T 25-04-2017 IPR001357 BRCT domain A4U88_RS14970 edaa8360a3df93ca53cd748441cdfc47 90 Gene3D G3DSA:3.40.50.10190 12 86 6.2E-11 T 25-04-2017 IPR001357 BRCT domain A4U88_RS01180 1225f1eac5d2b6874446263ba30fb503 148 SUPERFAMILY SSF55729 5 136 2.36E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS01180 1225f1eac5d2b6874446263ba30fb503 148 Gene3D G3DSA:3.40.630.30 2 136 3.0E-21 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS01180 1225f1eac5d2b6874446263ba30fb503 148 Pfam PF00583 Acetyltransferase (GNAT) family 71 128 1.4E-12 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 34 273 6.1E-87 T 25-04-2017 IPR003786 Protein FdhD GO:0016783 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 15 274 32.201 T 25-04-2017 IPR003786 Protein FdhD GO:0016783 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 Gene3D G3DSA:3.10.20.10 40 125 2.7E-32 T 25-04-2017 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 PIRSF PIRSF015626 8 276 8.9E-79 T 25-04-2017 IPR003786 Protein FdhD GO:0016783 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 Pfam PF02634 FdhD/NarQ family 38 273 2.2E-70 T 25-04-2017 IPR003786 Protein FdhD GO:0016783 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 SUPERFAMILY SSF53927 19 273 1.38E-77 T 25-04-2017 IPR016193 Cytidine deaminase-like GO:0003824 A4U88_RS14815 aa427fae79b02d9b34bd60d6a492c08f 280 Gene3D G3DSA:3.40.140.10 139 274 4.4E-46 T 25-04-2017 A4U88_RS04005 daafbed8ba0dd0d87425a3de1ba13858 129 SUPERFAMILY SSF54427 5 126 2.1E-42 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS04005 daafbed8ba0dd0d87425a3de1ba13858 129 Pfam PF11533 Protein of unknown function (DUF3225) 5 127 6.0E-61 T 25-04-2017 IPR024507 Protein of unknown function DUF3225 A4U88_RS04005 daafbed8ba0dd0d87425a3de1ba13858 129 Gene3D G3DSA:3.10.450.50 5 127 1.0E-59 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS17930 b8f5cb20f11c820f40ecc6dd39efe9db 150 SUPERFAMILY SSF55729 24 138 5.03E-17 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17930 b8f5cb20f11c820f40ecc6dd39efe9db 150 Pfam PF13673 Acetyltransferase (GNAT) domain 37 136 6.4E-6 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS17930 b8f5cb20f11c820f40ecc6dd39efe9db 150 Gene3D G3DSA:3.40.630.30 24 135 6.7E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09760 0bc6963f33ef375fd547d1f6dc974140 400 Pfam PF02687 FtsX-like permease family 271 393 6.7E-18 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS09760 0bc6963f33ef375fd547d1f6dc974140 400 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 400 2.8E-143 T 25-04-2017 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 A4U88_RS09760 0bc6963f33ef375fd547d1f6dc974140 400 Pfam PF12704 MacB-like periplasmic core domain 27 208 1.1E-12 T 25-04-2017 IPR025857 MacB-like periplasmic core domain A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 Gene3D G3DSA:3.40.190.10 181 270 1.2E-32 T 25-04-2017 A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 SUPERFAMILY SSF46785 3 113 1.33E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 Gene3D G3DSA:1.10.10.10 2 85 1.9E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 Pfam PF03466 LysR substrate binding domain 90 299 2.1E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 SUPERFAMILY SSF53850 91 302 1.38E-36 T 25-04-2017 A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.3E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.5E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.5E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.5E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11410 a80c5b42b5133749d2559de892fab837 303 Gene3D G3DSA:3.40.190.10 91 180 7.9E-25 T 25-04-2017 A4U88_RS13670 a0b910f5574a726c931fb8aef1e24142 188 SUPERFAMILY SSF54593 5 187 2.36E-69 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS13670 a0b910f5574a726c931fb8aef1e24142 188 Pfam PF06185 YecM protein 11 186 8.9E-75 T 25-04-2017 IPR010393 Protein of unknown function DUF991 A4U88_RS13670 a0b910f5574a726c931fb8aef1e24142 188 Gene3D G3DSA:3.10.180.10 5 187 1.7E-78 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS15275 b0cdb5c49071875b34c74871c4530c1c 165 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 21 165 3.3E-63 T 25-04-2017 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit A4U88_RS15275 b0cdb5c49071875b34c74871c4530c1c 165 SUPERFAMILY SSF117916 12 104 3.92E-24 T 25-04-2017 A4U88_RS15275 b0cdb5c49071875b34c74871c4530c1c 165 Pfam PF01883 Domain of unknown function DUF59 13 74 8.0E-12 T 25-04-2017 IPR002744 Domain of unknown function DUF59 A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Gene3D G3DSA:3.40.50.300 12 153 9.9E-32 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Gene3D G3DSA:1.10.3710.10 349 446 3.3E-34 T 25-04-2017 A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 SMART SM00382 50 166 2.8E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 SUPERFAMILY SSF48019 253 435 1.28E-71 T 25-04-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Pfam PF16193 AAA C-terminal domain 188 268 2.4E-21 T 25-04-2017 IPR032423 AAA ATPase, C-terminal domain A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 160 8.3E-15 T 25-04-2017 IPR003959 ATPase, AAA-type, core GO:0005524 A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Gene3D G3DSA:1.10.8.60 154 231 3.1E-7 T 25-04-2017 A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 SUPERFAMILY SSF52540 7 236 1.65E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 435 1.7E-65 T 25-04-2017 IPR021886 MgsA AAA+ ATPase C-terminal A4U88_RS08265 1d54d05f4997cc58ea02286a92555487 448 Gene3D G3DSA:1.20.272.10 250 348 7.7E-42 T 25-04-2017 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 429 107.282 T 25-04-2017 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 Gene3D G3DSA:3.40.640.10 73 318 1.3E-83 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 428 1.1E-201 T 25-04-2017 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 SUPERFAMILY SSF53383 5 428 1.73E-137 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 273 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 Pfam PF00202 Aminotransferase class-III 36 401 9.9E-79 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 Gene3D G3DSA:3.90.1150.10 5 72 1.5E-45 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS03470 a547ca8251f8bdd1dbc199b7c12bb241 429 Gene3D G3DSA:3.90.1150.10 322 428 1.5E-45 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS01655 faec3aa6291ceaead179343e7b7c8456 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 300 3.4E-120 T 25-04-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 A4U88_RS01655 faec3aa6291ceaead179343e7b7c8456 313 Pfam PF01715 IPP transferase 46 291 7.5E-85 T 25-04-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 A4U88_RS01655 faec3aa6291ceaead179343e7b7c8456 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 312 29.715 T 25-04-2017 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 A4U88_RS01655 faec3aa6291ceaead179343e7b7c8456 313 SUPERFAMILY SSF52540 13 158 4.38E-20 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01655 faec3aa6291ceaead179343e7b7c8456 313 Gene3D G3DSA:1.10.287.890 207 289 1.9E-32 T 25-04-2017 A4U88_RS01655 faec3aa6291ceaead179343e7b7c8456 313 Gene3D G3DSA:3.40.50.300 9 178 3.1E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06270 4f91ca67a5c20012e8c165f74756e17f 255 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 8 254 31.117 T 25-04-2017 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 A4U88_RS06270 4f91ca67a5c20012e8c165f74756e17f 255 Gene3D G3DSA:3.40.50.150 12 209 8.1E-41 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS06270 4f91ca67a5c20012e8c165f74756e17f 255 SUPERFAMILY SSF53335 14 209 1.27E-41 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS06270 4f91ca67a5c20012e8c165f74756e17f 255 Pfam PF08241 Methyltransferase domain 51 142 1.5E-25 T 25-04-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 A4U88_RS06270 4f91ca67a5c20012e8c165f74756e17f 255 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 16 254 5.7E-67 T 25-04-2017 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 Pfam PF00579 tRNA synthetases class I (W and Y) 4 284 3.5E-50 T 25-04-2017 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 Gene3D G3DSA:1.10.240.10 204 296 1.1E-34 T 25-04-2017 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 196 206 4.8E-22 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 4.8E-22 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 4.8E-22 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 4.8E-22 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 Gene3D G3DSA:3.40.50.620 4 203 7.3E-64 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 329 1.8E-69 T 25-04-2017 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 A4U88_RS06785 5d73d2336970a8ff1e62c4a8c6ad17aa 335 SUPERFAMILY SSF52374 4 329 5.23E-77 T 25-04-2017 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 SUPERFAMILY SSF55816 357 599 1.96E-40 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 Gene3D G3DSA:3.90.780.10 362 599 1.1E-46 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 24 648 0.0 T 25-04-2017 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 ProSitePatterns PS00785 5'-nucleotidase signature 1. 26 38 - T 25-04-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 ProSitePatterns PS00786 5'-nucleotidase signature 2. 111 122 - T 25-04-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 PRINTS PR01607 Apyrase family signature 24 42 1.1E-33 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 PRINTS PR01607 Apyrase family signature 245 268 1.1E-33 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 PRINTS PR01607 Apyrase family signature 285 305 1.1E-33 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 PRINTS PR01607 Apyrase family signature 532 551 1.1E-33 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 PRINTS PR01607 Apyrase family signature 217 234 1.1E-33 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 PRINTS PR01607 Apyrase family signature 430 453 1.1E-33 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 Gene3D G3DSA:3.60.21.10 13 361 1.1E-96 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 Pfam PF00149 Calcineurin-like phosphoesterase 26 261 5.9E-10 T 25-04-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 SUPERFAMILY SSF56300 20 356 1.75E-84 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS01775 f889919b23abab95b3bb256453f5b959 650 Pfam PF02872 5'-nucleotidase, C-terminal domain 357 552 3.7E-24 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS13920 4c81ac37cc2caa269a456e46b6575a22 74 Pfam PF10798 Biofilm development protein YmgB/AriR 21 68 2.1E-6 T 25-04-2017 IPR024753 Regulatory protein AriR GO:0042710|GO:0071229 A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 Pfam PF00920 Dehydratase family 34 607 4.0E-217 T 25-04-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 SUPERFAMILY SSF143975 3 420 6.15E-134 T 25-04-2017 A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 SUPERFAMILY SSF52016 421 610 7.3E-60 T 25-04-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 45.272 T 25-04-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 25-04-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 4.1E-266 T 25-04-2017 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS23345 553ea1dfdacda8b14a54f7a092316c63 614 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 25-04-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 Pfam PF02441 Flavoprotein 8 135 1.3E-33 T 25-04-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 Gene3D G3DSA:3.40.50.10300 188 403 1.8E-91 T 25-04-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 189 370 6.0E-76 T 25-04-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 SUPERFAMILY SSF102645 186 401 1.96E-80 T 25-04-2017 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 Gene3D G3DSA:3.40.50.1950 5 187 1.5E-66 T 25-04-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 SUPERFAMILY SSF52507 4 179 2.22E-60 T 25-04-2017 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 A4U88_RS23805 ec75551df199a9a71ea616aaaf6a5b0f 405 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 396 5.2E-162 T 25-04-2017 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5 A4U88_RS23545 0aabaa583be28bc39655bf8c9061e4ba 176 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 1.4E-86 T 25-04-2017 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 A4U88_RS23545 0aabaa583be28bc39655bf8c9061e4ba 176 SUPERFAMILY SSF56235 2 172 4.48E-58 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS23545 0aabaa583be28bc39655bf8c9061e4ba 176 PIRSF PIRSF039093 1 175 2.3E-88 T 25-04-2017 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 A4U88_RS23545 0aabaa583be28bc39655bf8c9061e4ba 176 Gene3D G3DSA:3.60.20.10 2 172 1.0E-84 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS23545 0aabaa583be28bc39655bf8c9061e4ba 176 Pfam PF00227 Proteasome subunit 2 167 1.1E-21 T 25-04-2017 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5687128|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-983168 A4U88_RS23545 0aabaa583be28bc39655bf8c9061e4ba 176 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 41.852 T 25-04-2017 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 A4U88_RS00160 57a855547c3f394af19e967875b6bd20 202 Pfam PF01810 LysE type translocator 12 194 3.5E-13 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS05545 878a6559cc481db4f36c4105406b0a18 441 Gene3D G3DSA:3.20.20.30 350 435 9.2E-132 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS05545 878a6559cc481db4f36c4105406b0a18 441 Gene3D G3DSA:3.20.20.30 7 309 9.2E-132 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS05545 878a6559cc481db4f36c4105406b0a18 441 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 13 429 1.5E-164 T 25-04-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 A4U88_RS05545 878a6559cc481db4f36c4105406b0a18 441 SUPERFAMILY SSF51679 8 435 2.62E-131 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS05545 878a6559cc481db4f36c4105406b0a18 441 Pfam PF00296 Luciferase-like monooxygenase 24 383 4.6E-64 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS05545 878a6559cc481db4f36c4105406b0a18 441 PIRSF PIRSF000337 7 441 4.4E-146 T 25-04-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 A4U88_RS20830 8e3d4944ea34a58a5dbdef0bbd3571bc 465 PIRSF PIRSF002744 2 465 8.9E-94 T 25-04-2017 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 A4U88_RS20830 8e3d4944ea34a58a5dbdef0bbd3571bc 465 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 20 421 4.9E-41 T 25-04-2017 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 Gene3D G3DSA:3.30.70.141 1 139 1.9E-60 T 25-04-2017 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.9E-38 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.9E-38 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.9E-38 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.9E-38 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.9E-38 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 SMART SM00562 3 140 3.6E-86 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 Pfam PF00334 Nucleoside diphosphate kinase 4 138 3.5E-56 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 25-04-2017 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.984 T 25-04-2017 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 A4U88_RS18405 4d94c4f349459853270c37bd73a3e1c7 141 SUPERFAMILY SSF54919 1 139 8.64E-59 T 25-04-2017 A4U88_RS05200 09cddf844baf56c14371be4bd32a2b2e 377 Gene3D G3DSA:1.10.10.60 313 351 2.2E-4 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05200 09cddf844baf56c14371be4bd32a2b2e 377 SUPERFAMILY SSF46689 270 351 7.89E-5 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05200 09cddf844baf56c14371be4bd32a2b2e 377 Pfam PF05651 Putative sugar diacid recognition 9 141 2.0E-50 T 25-04-2017 IPR008599 Putative sugar diacid recognition A4U88_RS05200 09cddf844baf56c14371be4bd32a2b2e 377 Pfam PF13556 PucR C-terminal helix-turn-helix domain 317 373 4.6E-19 T 25-04-2017 IPR025736 PucR C-terminal helix-turn-helix domain A4U88_RS16790 eb55dc805cafe1fb8a8838a83384e315 287 SUPERFAMILY SSF103481 176 276 5.89E-11 T 25-04-2017 A4U88_RS16790 eb55dc805cafe1fb8a8838a83384e315 287 Pfam PF00892 EamA-like transporter family 144 271 9.3E-8 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS16790 eb55dc805cafe1fb8a8838a83384e315 287 Pfam PF00892 EamA-like transporter family 3 131 8.7E-8 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS16790 eb55dc805cafe1fb8a8838a83384e315 287 SUPERFAMILY SSF103481 35 135 4.71E-9 T 25-04-2017 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 2.3E-17 T 25-04-2017 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 2.3E-17 T 25-04-2017 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 2.3E-17 T 25-04-2017 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 2.3E-17 T 25-04-2017 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 Pfam PF01494 FAD binding domain 8 341 4.9E-27 T 25-04-2017 IPR002938 FAD-binding domain GO:0071949 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 392 1.3E-128 T 25-04-2017 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 Gene3D G3DSA:3.50.50.60 270 358 3.8E-46 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 Gene3D G3DSA:3.50.50.60 7 185 3.8E-46 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 SUPERFAMILY SSF51905 8 180 1.53E-58 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05720 d79b966f3aa91739680ace5b3280a3be 393 SUPERFAMILY SSF51905 269 384 1.53E-58 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 ProSitePatterns PS00211 ABC transporters family signature. 630 644 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 Pfam PF00664 ABC transporter transmembrane region 179 443 7.7E-44 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 SUPERFAMILY SSF90123 165 479 1.57E-54 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 Pfam PF03412 Peptidase C39 family 21 149 6.0E-38 T 25-04-2017 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 Gene3D G3DSA:3.90.70.10 28 147 6.9E-26 T 25-04-2017 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 SUPERFAMILY SSF52540 488 698 6.35E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 Pfam PF00005 ABC transporter 510 658 4.0E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 Gene3D G3DSA:1.20.1560.10 172 470 1.7E-59 T 25-04-2017 A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 Gene3D G3DSA:3.40.50.300 493 698 2.9E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11375 ed4ab004ef7d2296df6bca18ba4d0b99 699 SMART SM00382 518 699 4.7E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00170 e8d0e1d0362f1694f5fd3c78141dd0e6 120 Pfam PF10928 Protein of unknown function (DUF2810) 66 118 2.1E-32 T 25-04-2017 IPR021230 Protein of unknown function DUF2810 A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 SMART SM00345 15 74 9.6E-22 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 SUPERFAMILY SSF48008 117 247 3.14E-24 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 SUPERFAMILY SSF46785 6 78 1.01E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 SMART SM00895 117 243 6.2E-23 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 1.4E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 1.4E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 Pfam PF07729 FCD domain 118 242 2.4E-22 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 Gene3D G3DSA:1.20.120.530 118 248 5.4E-25 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.2E-20 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02735 2e062f4f636b8cee0bccb799a7d89ee2 252 Gene3D G3DSA:1.10.10.10 8 79 1.4E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13635 cd9b428feb2267f0254c56e761619dc3 247 Pfam PF13649 Methyltransferase domain 60 158 1.0E-14 T 25-04-2017 A4U88_RS13635 cd9b428feb2267f0254c56e761619dc3 247 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 42.838 T 25-04-2017 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 A4U88_RS13635 cd9b428feb2267f0254c56e761619dc3 247 Gene3D G3DSA:3.40.50.150 19 241 1.5E-64 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13635 cd9b428feb2267f0254c56e761619dc3 247 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 2.4E-127 T 25-04-2017 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 A4U88_RS13635 cd9b428feb2267f0254c56e761619dc3 247 SUPERFAMILY SSF53335 20 242 5.73E-42 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13635 cd9b428feb2267f0254c56e761619dc3 247 PIRSF PIRSF006325 1 243 1.5E-130 T 25-04-2017 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 A4U88_RS13665 a19c4e2365163c96d4180deb61a669fe 382 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 5 377 5.0E-127 T 25-04-2017 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 A4U88_RS13665 a19c4e2365163c96d4180deb61a669fe 382 SUPERFAMILY SSF53383 1 377 3.71E-90 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS13665 a19c4e2365163c96d4180deb61a669fe 382 Gene3D G3DSA:3.90.1150.10 250 377 2.4E-31 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS13665 a19c4e2365163c96d4180deb61a669fe 382 Pfam PF00155 Aminotransferase class I and II 34 372 1.4E-32 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS13665 a19c4e2365163c96d4180deb61a669fe 382 Gene3D G3DSA:3.40.640.10 40 249 1.1E-47 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 8.2E-65 T 25-04-2017 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Gene3D G3DSA:3.30.43.10 2 109 2.1E-29 T 25-04-2017 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Gene3D G3DSA:3.30.465.10 110 282 4.1E-41 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Pfam PF01565 FAD binding domain 52 192 7.4E-37 T 25-04-2017 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Pfam PF13183 4Fe-4S dicluster domain 576 687 3.1E-12 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 SUPERFAMILY SSF56176 18 282 1.5E-53 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 SUPERFAMILY SSF46548 655 690 3.53E-8 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 SUPERFAMILY SSF46548 516 622 3.53E-8 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 673 684 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 SUPERFAMILY SSF55103 259 542 7.85E-54 T 25-04-2017 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Gene3D G3DSA:1.10.1060.10 654 705 1.9E-15 T 25-04-2017 A4U88_RS10655 33a4c90db0cea6fd8138a8e57ff737d5 1018 Gene3D G3DSA:1.10.1060.10 516 619 1.9E-15 T 25-04-2017 A4U88_RS08585 f262774e487af0441b85629695393ff0 152 SUPERFAMILY SSF52335 6 150 1.63E-60 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS08585 f262774e487af0441b85629695393ff0 152 Pfam PF02142 MGS-like domain 26 118 8.2E-21 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS08585 f262774e487af0441b85629695393ff0 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 39.575 T 25-04-2017 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 A4U88_RS08585 f262774e487af0441b85629695393ff0 152 Gene3D G3DSA:3.40.50.1380 2 151 8.2E-68 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS08585 f262774e487af0441b85629695393ff0 152 SMART SM00851 25 118 2.7E-28 T 25-04-2017 IPR011607 Methylglyoxal synthase-like domain A4U88_RS08585 f262774e487af0441b85629695393ff0 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 25-04-2017 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 A4U88_RS08585 f262774e487af0441b85629695393ff0 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 4.9E-69 T 25-04-2017 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 A4U88_RS08585 f262774e487af0441b85629695393ff0 152 PIRSF PIRSF006614 8 151 2.7E-67 T 25-04-2017 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 A4U88_RS12635 f52ba5e3f11e4a38cf59860df6ad9467 137 Gene3D G3DSA:3.10.180.10 12 129 1.2E-28 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS12635 f52ba5e3f11e4a38cf59860df6ad9467 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 128 1.9E-6 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS12635 f52ba5e3f11e4a38cf59860df6ad9467 137 SUPERFAMILY SSF54593 12 134 1.1E-21 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS20560 7d00673e125459551b6aa2ad044c8688 140 SUPERFAMILY SSF53098 4 137 4.4E-41 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS20560 7d00673e125459551b6aa2ad044c8688 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 7 136 6.5E-57 T 25-04-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 A4U88_RS20560 7d00673e125459551b6aa2ad044c8688 140 Gene3D G3DSA:3.30.420.140 4 138 1.4E-45 T 25-04-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 A4U88_RS20560 7d00673e125459551b6aa2ad044c8688 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 25.34 T 25-04-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 A4U88_RS20560 7d00673e125459551b6aa2ad044c8688 140 SMART SM00732 4 104 6.7E-40 T 25-04-2017 IPR006641 YqgF/RNase H-like domain GO:0006139 A4U88_RS20560 7d00673e125459551b6aa2ad044c8688 140 Pfam PF03652 Holliday junction resolvase 5 136 6.4E-41 T 25-04-2017 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 A4U88_RS18185 1523afbdc9ece2cff65574da9f97bfad 120 SUPERFAMILY SSF141530 4 119 7.72E-37 T 25-04-2017 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 A4U88_RS18185 1523afbdc9ece2cff65574da9f97bfad 120 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 115 8.4E-38 T 25-04-2017 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 A4U88_RS18185 1523afbdc9ece2cff65574da9f97bfad 120 Gene3D G3DSA:2.40.33.40 1 119 2.5E-43 T 25-04-2017 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 A4U88_RS18185 1523afbdc9ece2cff65574da9f97bfad 120 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 6 118 4.0E-37 T 25-04-2017 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 279 300 2.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 313 337 2.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 84 104 2.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 391 406 2.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 SUPERFAMILY SSF111369 202 306 8.89E-5 T 25-04-2017 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 Pfam PF13437 HlyD family secretion protein 268 381 3.1E-12 T 25-04-2017 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 Gene3D G3DSA:2.40.50.100 265 297 6.9E-11 T 25-04-2017 A4U88_RS15415 f9eee89ad1e1b851ec5f2e81c94dcba2 431 Gene3D G3DSA:2.40.50.100 78 106 6.9E-11 T 25-04-2017 A4U88_RS01740 3dba1001d3e4400c1f48905b41a603d3 132 Pfam PF01250 Ribosomal protein S6 3 91 5.8E-28 T 25-04-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01740 3dba1001d3e4400c1f48905b41a603d3 132 Gene3D G3DSA:3.30.70.60 1 103 3.0E-42 T 25-04-2017 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 A4U88_RS01740 3dba1001d3e4400c1f48905b41a603d3 132 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.897 T 25-04-2017 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS01740 3dba1001d3e4400c1f48905b41a603d3 132 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 8.4E-38 T 25-04-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01740 3dba1001d3e4400c1f48905b41a603d3 132 SUPERFAMILY SSF54995 1 103 1.44E-37 T 25-04-2017 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01740 3dba1001d3e4400c1f48905b41a603d3 132 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 25-04-2017 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.581 T 25-04-2017 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 25-04-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 SUPERFAMILY SSF51726 1 352 2.27E-122 T 25-04-2017 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 25-04-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 Gene3D G3DSA:3.20.20.210 2 351 8.7E-157 T 25-04-2017 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 346 3.6E-136 T 25-04-2017 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS01240 6fe1c2cce6ffefa238bd7aa7a7d34736 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 1.3E-141 T 25-04-2017 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS23290 60580380164bd3363eccd60778b7b65d 255 PIRSF PIRSF001273 2 252 6.4E-92 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS23290 60580380164bd3363eccd60778b7b65d 255 Gene3D G3DSA:3.30.428.30 27 249 1.0E-93 T 25-04-2017 A4U88_RS23290 60580380164bd3363eccd60778b7b65d 255 SUPERFAMILY SSF54197 30 248 1.98E-85 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS23290 60580380164bd3363eccd60778b7b65d 255 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 3 250 41.837 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS23290 60580380164bd3363eccd60778b7b65d 255 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 30 248 6.9E-89 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 SMART SM00363 18 83 1.7E-10 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 Gene3D G3DSA:3.10.290.10 18 69 2.6E-12 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 SUPERFAMILY SSF55174 17 69 3.2E-11 T 25-04-2017 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 25-04-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 SUPERFAMILY SSF55120 77 321 3.29E-79 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 Pfam PF00849 RNA pseudouridylate synthase 92 241 2.0E-31 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 312 3.8E-110 T 25-04-2017 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03900 fc0b62a0901e60b5b04d695aa2bb1078 325 Pfam PF01479 S4 domain 18 65 1.1E-10 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS18400 3b86584febeff14f3cea1be02a876e0a 398 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 31 378 74.781 T 25-04-2017 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS18400 3b86584febeff14f3cea1be02a876e0a 398 Pfam PF04055 Radical SAM superfamily 134 304 1.8E-17 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS18400 3b86584febeff14f3cea1be02a876e0a 398 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 30 383 6.1E-174 T 25-04-2017 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS18400 3b86584febeff14f3cea1be02a876e0a 398 Gene3D G3DSA:3.20.20.70 131 336 1.0E-16 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS18400 3b86584febeff14f3cea1be02a876e0a 398 PIRSF PIRSF006004 23 391 2.5E-147 T 25-04-2017 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS18400 3b86584febeff14f3cea1be02a876e0a 398 SUPERFAMILY SSF102114 130 347 4.45E-15 T 25-04-2017 A4U88_RS04680 4eb59acd2d7db1d2c9a7371649de0bd9 309 Pfam PF06675 Protein of unknown function (DUF1177) 40 308 4.4E-138 T 25-04-2017 IPR009561 Protein of unknown function DUF1177 A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 SUPERFAMILY SSF52821 1 154 9.3E-41 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 SMART SM00450 156 275 1.4E-15 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 SMART SM00450 7 133 1.8E-23 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 Gene3D G3DSA:3.40.250.10 1 153 9.3E-45 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 SUPERFAMILY SSF52821 168 273 2.88E-31 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 Pfam PF00581 Rhodanese-like domain 160 270 4.4E-13 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 Pfam PF00581 Rhodanese-like domain 8 129 3.5E-18 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 Gene3D G3DSA:3.40.250.10 154 273 7.8E-39 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 25-04-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 A4U88_RS06910 78b42e2a8ec495de162701c386e378bc 281 ProSitePatterns PS00683 Rhodanese C-terminal signature. 259 269 - T 25-04-2017 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 SUPERFAMILY SSF51735 5 158 4.17E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 2.4E-37 T 25-04-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 SMART SM00859 6 121 2.7E-33 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 Gene3D G3DSA:3.30.360.10 145 313 1.7E-53 T 25-04-2017 A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 Gene3D G3DSA:3.40.50.720 1 144 5.9E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 SUPERFAMILY SSF55347 132 318 2.85E-52 T 25-04-2017 A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 PIRSF PIRSF000148 4 336 1.9E-96 T 25-04-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS17035 6241b21e3f1c6c1c5d6b5af59187ea9a 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 118 5.4E-25 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS06545 15d358b507d03e1e2a0267b26e9fa676 283 SUPERFAMILY SSF103481 43 140 2.35E-7 T 25-04-2017 A4U88_RS06545 15d358b507d03e1e2a0267b26e9fa676 283 SUPERFAMILY SSF103481 190 282 5.23E-12 T 25-04-2017 A4U88_RS06545 15d358b507d03e1e2a0267b26e9fa676 283 Pfam PF00892 EamA-like transporter family 149 280 6.2E-12 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS06545 15d358b507d03e1e2a0267b26e9fa676 283 Pfam PF00892 EamA-like transporter family 12 137 3.0E-8 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS21910 b08a338888fc0ea95e22e77f7f4f2878 122 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 25-04-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 A4U88_RS21910 b08a338888fc0ea95e22e77f7f4f2878 122 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 117 5.7E-35 T 25-04-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 A4U88_RS21910 b08a338888fc0ea95e22e77f7f4f2878 122 Gene3D G3DSA:1.10.3830.10 4 121 2.2E-45 T 25-04-2017 A4U88_RS21515 e8e823444edcd56ea384962f63d005d2 128 SUPERFAMILY SSF47175 23 128 4.12E-30 T 25-04-2017 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 A4U88_RS21515 e8e823444edcd56ea384962f63d005d2 128 Pfam PF07361 Cytochrome b562 24 128 8.9E-33 T 25-04-2017 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 A4U88_RS21515 e8e823444edcd56ea384962f63d005d2 128 Gene3D G3DSA:1.20.120.10 23 128 1.2E-40 T 25-04-2017 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 A4U88_RS21515 e8e823444edcd56ea384962f63d005d2 128 PIRSF PIRSF000029 1 128 4.4E-48 T 25-04-2017 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 139 4.2E-28 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 Pfam PF00381 PTS HPr component phosphorylation site 287 369 9.6E-23 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 SUPERFAMILY SSF55594 287 375 4.32E-24 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 25-04-2017 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 Gene3D G3DSA:3.40.930.10 151 279 7.2E-10 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 25-04-2017 IPR002114 Phosphotransferase system, HPr serine phosphorylation site A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 Gene3D G3DSA:3.30.1340.10 287 374 1.7E-30 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 SUPERFAMILY SSF55804 2 140 1.02E-38 T 25-04-2017 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 Gene3D G3DSA:3.40.930.10 4 141 2.3E-39 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 PRINTS PR00107 Phosphocarrier protein signature 297 313 6.7E-17 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 PRINTS PR00107 Phosphocarrier protein signature 325 340 6.7E-17 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 PRINTS PR00107 Phosphocarrier protein signature 340 357 6.7E-17 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 2.0E-21 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS16340 4f607d39b4d490fa0b9d30c67c121eb8 377 SUPERFAMILY SSF55804 148 276 1.92E-13 T 25-04-2017 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 9.5E-41 T 25-04-2017 IPR000238 Ribosome-binding factor A GO:0006364 A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 123 22.235 T 25-04-2017 IPR000238 Ribosome-binding factor A GO:0006364 A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 103 2.0E-45 T 25-04-2017 IPR000238 Ribosome-binding factor A GO:0006364 A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 Pfam PF02033 Ribosome-binding factor A 7 115 1.2E-30 T 25-04-2017 IPR000238 Ribosome-binding factor A GO:0006364 A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 ProSitePatterns PS01319 Ribosome-binding factor A signature. 82 103 - T 25-04-2017 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 Gene3D G3DSA:3.30.300.20 4 124 8.2E-38 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS01970 e8c7aef7d360e941a88eb266efaadd7e 136 SUPERFAMILY SSF89919 2 110 1.31E-31 T 25-04-2017 IPR023799 Ribosome-binding factor A domain A4U88_RS06310 35dc0c7eeeca7509967946d0c0f86489 159 Pfam PF01967 MoaC family 15 150 2.4E-54 T 25-04-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 A4U88_RS06310 35dc0c7eeeca7509967946d0c0f86489 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 9.4E-72 T 25-04-2017 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 A4U88_RS06310 35dc0c7eeeca7509967946d0c0f86489 159 SUPERFAMILY SSF55040 11 155 3.92E-61 T 25-04-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 A4U88_RS06310 35dc0c7eeeca7509967946d0c0f86489 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 36.359 T 25-04-2017 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type Reactome: R-HSA-947581 A4U88_RS06310 35dc0c7eeeca7509967946d0c0f86489 159 Gene3D G3DSA:3.30.70.640 3 157 7.0E-70 T 25-04-2017 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 A4U88_RS23985 79e91e4dd58d5c5572979f53277963d5 196 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 3 188 29.482 T 25-04-2017 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 A4U88_RS23985 79e91e4dd58d5c5572979f53277963d5 196 Gene3D G3DSA:3.90.550.10 3 190 8.3E-57 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS23985 79e91e4dd58d5c5572979f53277963d5 196 Pfam PF12804 MobA-like NTP transferase domain 7 157 3.1E-34 T 25-04-2017 IPR025877 MobA-like NTP transferase A4U88_RS23985 79e91e4dd58d5c5572979f53277963d5 196 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 5 185 1.7E-69 T 25-04-2017 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 A4U88_RS23985 79e91e4dd58d5c5572979f53277963d5 196 SUPERFAMILY SSF53448 5 184 5.01E-33 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS09190 9fdd04e3e43c68935c5998b0ed23b5e7 344 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 137.868 T 25-04-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 A4U88_RS09190 9fdd04e3e43c68935c5998b0ed23b5e7 344 PIRSF PIRSF002465 2 344 4.0E-119 T 25-04-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 A4U88_RS09190 9fdd04e3e43c68935c5998b0ed23b5e7 344 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 342 1.1E-128 T 25-04-2017 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 A4U88_RS09190 9fdd04e3e43c68935c5998b0ed23b5e7 344 Gene3D G3DSA:3.40.718.10 3 339 9.8E-131 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS09190 9fdd04e3e43c68935c5998b0ed23b5e7 344 Pfam PF02504 Fatty acid synthesis protein 5 331 1.3E-113 T 25-04-2017 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 A4U88_RS09190 9fdd04e3e43c68935c5998b0ed23b5e7 344 SUPERFAMILY SSF53659 4 340 4.68E-98 T 25-04-2017 A4U88_RS22685 f5e110b59e2dcf58ef3538cba6a833cf 184 Gene3D G3DSA:3.90.79.10 9 182 1.1E-41 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS22685 f5e110b59e2dcf58ef3538cba6a833cf 184 Pfam PF00293 NUDIX domain 47 140 1.5E-13 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS22685 f5e110b59e2dcf58ef3538cba6a833cf 184 SUPERFAMILY SSF55811 2 178 2.98E-37 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS22685 f5e110b59e2dcf58ef3538cba6a833cf 184 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS13805 fbc53329ebd30ba81ac0957edda4640e 152 PIRSF PIRSF020687 1 152 9.5E-67 T 25-04-2017 IPR009328 Protein of unknown function DUF986 A4U88_RS13805 fbc53329ebd30ba81ac0957edda4640e 152 Pfam PF06173 Protein of unknown function (DUF986) 4 150 6.9E-64 T 25-04-2017 IPR009328 Protein of unknown function DUF986 A4U88_RS13805 fbc53329ebd30ba81ac0957edda4640e 152 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 3 144 2.0E-39 T 25-04-2017 IPR009328 Protein of unknown function DUF986 A4U88_RS13805 fbc53329ebd30ba81ac0957edda4640e 152 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 31.43 T 25-04-2017 IPR009328 Protein of unknown function DUF986 A4U88_RS12590 b4314143ce5d6ac58abb84c0848742fb 107 PIRSF PIRSF025560 1 107 4.8E-38 T 25-04-2017 IPR008309 Uncharacterised conserved protein UCP025560 A4U88_RS12590 b4314143ce5d6ac58abb84c0848742fb 107 Pfam PF07027 Protein of unknown function (DUF1318) 19 107 1.2E-29 T 25-04-2017 IPR008309 Uncharacterised conserved protein UCP025560 A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 Pfam PF03466 LysR substrate binding domain 86 290 4.9E-40 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 Gene3D G3DSA:3.40.190.10 90 175 1.8E-22 T 25-04-2017 A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 SUPERFAMILY SSF46785 3 108 1.21E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 Gene3D G3DSA:3.40.190.10 176 256 3.6E-7 T 25-04-2017 A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.9E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 Gene3D G3DSA:1.10.10.10 3 82 4.4E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15345 87b2462a34ec427759fa0c814712ed92 303 SUPERFAMILY SSF53850 87 293 1.41E-41 T 25-04-2017 A4U88_RS09700 ab0624a179c3b9728f61cca6c7964560 207 Gene3D G3DSA:2.50.20.10 15 207 5.7E-68 T 25-04-2017 A4U88_RS09700 ab0624a179c3b9728f61cca6c7964560 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 29.385 T 25-04-2017 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 A4U88_RS09700 ab0624a179c3b9728f61cca6c7964560 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 2.6E-48 T 25-04-2017 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 A4U88_RS09700 ab0624a179c3b9728f61cca6c7964560 207 SUPERFAMILY SSF89392 37 206 2.16E-54 T 25-04-2017 IPR029046 Lipoprotein localisation LolA/LolB/LppX A4U88_RS09700 ab0624a179c3b9728f61cca6c7964560 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 8 205 2.7E-74 T 25-04-2017 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 A4U88_RS14175 a7099927b37d803a2416aaead9e0f16d 280 SMART SM00382 34 233 1.7E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS14175 a7099927b37d803a2416aaead9e0f16d 280 SUPERFAMILY SSF52540 23 246 8.25E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14175 a7099927b37d803a2416aaead9e0f16d 280 Pfam PF00005 ABC transporter 27 184 3.1E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS14175 a7099927b37d803a2416aaead9e0f16d 280 Gene3D G3DSA:3.40.50.300 6 254 1.5E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00970 4321c28aa8dd8ff39028974475d5109c 515 Pfam PF02646 RmuC family 171 467 5.6E-106 T 25-04-2017 IPR003798 DNA recombination RmuC A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 SUPERFAMILY SSF54373 211 307 4.58E-10 T 25-04-2017 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 Gene3D G3DSA:3.50.50.60 139 209 3.4E-34 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 Gene3D G3DSA:3.50.50.60 6 81 3.4E-34 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 Gene3D G3DSA:3.50.50.60 309 365 3.4E-34 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 Gene3D G3DSA:3.30.9.10 210 306 1.1E-13 T 25-04-2017 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 Gene3D G3DSA:3.30.9.10 86 138 1.1E-13 T 25-04-2017 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 Pfam PF01266 FAD dependent oxidoreductase 8 347 4.7E-46 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 SUPERFAMILY SSF51905 309 365 3.24E-39 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08855 60f6d22bed1c965b4e9fb6c7ee69a938 374 SUPERFAMILY SSF51905 7 212 3.24E-39 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07730 e4af4044d13dbc94440b55ea6a1a7892 390 Gene3D G3DSA:3.20.20.80 33 343 2.7E-50 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS07730 e4af4044d13dbc94440b55ea6a1a7892 390 SUPERFAMILY SSF51445 30 342 8.57E-54 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS12350 b9ba8b0d5e9356a378251fc534c1f6b6 383 Pfam PF13458 Periplasmic binding protein 28 370 4.1E-63 T 25-04-2017 IPR028081 Leucine-binding protein domain A4U88_RS12350 b9ba8b0d5e9356a378251fc534c1f6b6 383 Gene3D G3DSA:3.40.50.2300 27 230 2.9E-60 T 25-04-2017 A4U88_RS12350 b9ba8b0d5e9356a378251fc534c1f6b6 383 SUPERFAMILY SSF53822 27 373 5.07E-89 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 Pfam PF03466 LysR substrate binding domain 89 290 2.5E-43 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.5E-22 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 Gene3D G3DSA:3.40.190.10 90 175 4.6E-13 T 25-04-2017 A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 Gene3D G3DSA:3.40.190.10 176 261 9.0E-25 T 25-04-2017 A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 SUPERFAMILY SSF46785 2 86 3.89E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 Gene3D G3DSA:1.10.10.10 2 86 3.4E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.3E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.3E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.3E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21750 306909fe37ffce1c9d3221d0fc65d22f 295 SUPERFAMILY SSF53850 90 293 1.09E-42 T 25-04-2017 A4U88_RS20140 f8d12be3622ef0da606601482e6abb19 343 Gene3D G3DSA:3.20.20.210 3 340 4.5E-90 T 25-04-2017 A4U88_RS20140 f8d12be3622ef0da606601482e6abb19 343 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 330 8.6E-40 T 25-04-2017 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 A4U88_RS20140 f8d12be3622ef0da606601482e6abb19 343 SUPERFAMILY SSF51726 7 341 6.41E-70 T 25-04-2017 A4U88_RS20140 f8d12be3622ef0da606601482e6abb19 343 PIRSF PIRSF005632 1 343 3.2E-200 T 25-04-2017 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 Hamap MF_01418 Agmatinase [speB]. 1 304 67.667 T 25-04-2017 IPR023694 Agmatinase GO:0008783|GO:0009446|GO:0030145 KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305 A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 Gene3D G3DSA:3.40.800.10 12 304 1.7E-95 T 25-04-2017 IPR023696 Ureohydrolase domain A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 SUPERFAMILY SSF52768 14 301 6.3E-91 T 25-04-2017 A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 Pfam PF00491 Arginase family 34 296 2.1E-85 T 25-04-2017 IPR006035 Ureohydrolase GO:0046872 A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 PIRSF PIRSF036979 15 304 1.1E-98 T 25-04-2017 IPR006035 Ureohydrolase GO:0046872 A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 ProSitePatterns PS01053 Arginase family signature. 228 249 - T 25-04-2017 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 A4U88_RS20305 78dc15acf1acd00f730844dd84a3d2e2 306 TIGRFAM TIGR01230 agmatinase: agmatinase 23 298 6.0E-108 T 25-04-2017 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 Gene3D G3DSA:3.60.120.10 5 516 3.5E-162 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 PIRSF PIRSF001373 1 520 1.9E-250 T 25-04-2017 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 SUPERFAMILY SSF56322 8 515 3.01E-166 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 515 5.5E-242 T 25-04-2017 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 9.7E-25 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 9.7E-25 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 9.7E-25 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 9.7E-25 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 20 190 4.2E-15 T 25-04-2017 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13010 26987d045b66c0145a42476987ffac35 520 Pfam PF00425 chorismate binding enzyme 242 502 8.1E-85 T 25-04-2017 IPR015890 Chorismate-utilising enzyme, C-terminal A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 SMART SM00382 29 225 5.9E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 SMART SM00382 277 472 7.3E-9 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 Pfam PF00005 ABC transporter 22 169 1.0E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 Pfam PF00005 ABC transporter 269 423 9.2E-24 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 SUPERFAMILY SSF52540 262 482 4.53E-49 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 Gene3D G3DSA:3.40.50.300 265 488 5.3E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 Gene3D G3DSA:3.40.50.300 2 231 2.3E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 SUPERFAMILY SSF52540 3 231 4.85E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24045 1f5ea6297c559a455e98501ee8ae9aea 501 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS04230 1751cee3e27cb3effcaebc309f8acea5 184 SMART SM00479 7 182 1.3E-5 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS04230 1751cee3e27cb3effcaebc309f8acea5 184 Pfam PF16473 3' exoribonuclease, RNase T-like 9 173 7.6E-11 T 25-04-2017 IPR033390 3'-5' exoribonuclease Rv2179c-like domain A4U88_RS04230 1751cee3e27cb3effcaebc309f8acea5 184 Gene3D G3DSA:3.30.420.10 3 182 5.2E-27 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS04230 1751cee3e27cb3effcaebc309f8acea5 184 SUPERFAMILY SSF53098 5 181 5.01E-34 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 Gene3D G3DSA:3.40.190.10 89 181 2.6E-21 T 25-04-2017 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.8E-12 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.8E-12 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.8E-12 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 Pfam PF03466 LysR substrate binding domain 89 290 1.5E-44 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 SUPERFAMILY SSF53850 90 290 1.71E-41 T 25-04-2017 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 SUPERFAMILY SSF46785 3 110 6.07E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 Gene3D G3DSA:1.10.10.10 2 85 5.8E-33 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 Gene3D G3DSA:3.40.190.10 182 259 2.0E-18 T 25-04-2017 A4U88_RS07465 06e0dad180df746d94f061e654fcddcd 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.6E-28 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 Gene3D G3DSA:3.40.50.720 173 287 5.4E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 2.5E-28 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 Gene3D G3DSA:3.90.180.10 1 172 2.5E-51 T 25-04-2017 IPR011032 GroES-like A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 SMART SM00829 12 338 1.7E-6 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 SUPERFAMILY SSF50129 1 173 1.17E-53 T 25-04-2017 IPR011032 GroES-like A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 4.0E-184 T 25-04-2017 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 4.4E-32 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 SUPERFAMILY SSF51735 141 305 3.4E-38 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS23700 1f7222ce689e6cc470743402ad64d991 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.534 T 25-04-2017 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00260+1.1.1.103|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7378 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 7.9E-55 T 25-04-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 4.4E-60 T 25-04-2017 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 Gene3D G3DSA:2.40.150.20 1 123 6.8E-56 T 25-04-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 25-04-2017 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 25-04-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 28.664 T 25-04-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 A4U88_RS22295 085432ff5f62d9b40e7465024b6fef37 123 SMART SM01374 1 123 3.9E-86 T 25-04-2017 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 Gene3D G3DSA:3.30.1270.10 212 246 6.4E-42 T 25-04-2017 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 Gene3D G3DSA:3.30.1270.10 82 134 6.4E-42 T 25-04-2017 IPR026563 Transcriptional regulator TACO1-like, domain 2 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 Gene3D G3DSA:3.30.70.980 135 205 5.9E-29 T 25-04-2017 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 Pfam PF01709 Transcriptional regulator 5 236 3.2E-93 T 25-04-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 Gene3D G3DSA:1.10.10.200 1 79 1.0E-34 T 25-04-2017 IPR017856 Integrase, N-terminal zinc-binding domain-like A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 2.6E-106 T 25-04-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 36.321 T 25-04-2017 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS13600 55aac06c07ebb97b26b2b7b8ffd7ebd7 247 SUPERFAMILY SSF75625 3 245 7.19E-97 T 25-04-2017 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 Gene3D G3DSA:2.40.50.140 7 70 3.0E-20 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 SUPERFAMILY SSF50249 5 70 1.61E-17 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 Pfam PF00313 'Cold-shock' DNA-binding domain 7 67 3.1E-19 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 PIRSF PIRSF002599 1 74 1.2E-15 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 SMART SM00357 7 69 5.5E-14 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 PRINTS PR00050 Cold shock protein signature 28 37 9.6E-8 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 PRINTS PR00050 Cold shock protein signature 42 60 9.6E-8 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS21100 1304bd6be06e257f0280ea547f181219 74 PRINTS PR00050 Cold shock protein signature 8 23 9.6E-8 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Pfam PF00501 AMP-binding enzyme 230 619 7.9E-66 T 25-04-2017 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Pfam PF01553 Acyltransferase 16 137 7.4E-15 T 25-04-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Gene3D G3DSA:3.40.50.980 209 376 3.5E-18 T 25-04-2017 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Gene3D G3DSA:2.30.38.10 533 609 1.9E-13 T 25-04-2017 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 25-04-2017 IPR020845 AMP-binding, conserved site A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Gene3D G3DSA:3.40.50.980 377 532 6.5E-38 T 25-04-2017 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 SMART SM00563 30 140 3.3E-25 T 25-04-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 53.109 T 25-04-2017 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 Gene3D G3DSA:3.30.300.30 617 713 4.8E-5 T 25-04-2017 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 SUPERFAMILY SSF69593 6 171 2.62E-21 T 25-04-2017 A4U88_RS19500 c0a2aded962d52d3099c922eb67491e3 717 SUPERFAMILY SSF56801 191 713 8.5E-95 T 25-04-2017 A4U88_RS02420 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 13 32 2.0E-39 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS02420 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 32 50 2.0E-39 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS02420 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 58 80 2.0E-39 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS02420 27c68662e1ca866d28d159f166e3d46e 230 PRINTS PR01837 MgtC/SapB protein signature 85 109 2.0E-39 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS02420 27c68662e1ca866d28d159f166e3d46e 230 Pfam PF02308 MgtC family 10 131 9.0E-33 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS10630 9da3183cfaa6ddf02e2ea293ac9d6ee8 273 Pfam PF03618 Kinase/pyrophosphorylase 5 263 4.8E-74 T 25-04-2017 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 A4U88_RS10630 9da3183cfaa6ddf02e2ea293ac9d6ee8 273 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 272 73.514 T 25-04-2017 IPR026530 Phosphoenolpyruvate synthase regulatory protein A4U88_RS10630 9da3183cfaa6ddf02e2ea293ac9d6ee8 273 SUPERFAMILY SSF47454 173 230 5.75E-5 T 25-04-2017 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain GO:0003677|GO:0006355 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 Gene3D G3DSA:3.40.630.40 333 408 2.4E-60 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 Gene3D G3DSA:3.40.630.40 189 286 2.4E-60 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 191 405 2.7E-50 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 SMART SM00646 251 405 4.7E-66 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 SUPERFAMILY SSF53187 332 408 1.88E-53 T 25-04-2017 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 SUPERFAMILY SSF53187 189 285 1.88E-53 T 25-04-2017 A4U88_RS19405 8c6636dd6f5814fbb9e2f99bfc326f3d 417 Pfam PF11741 AMIN domain 39 142 2.2E-26 T 25-04-2017 IPR021731 AMIN domain A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 SMART SM00829 7 332 6.9E-6 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 SUPERFAMILY SSF50129 1 169 5.63E-45 T 25-04-2017 IPR011032 GroES-like A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 Gene3D G3DSA:3.40.50.720 166 282 1.0E-31 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 SUPERFAMILY SSF51735 135 302 6.8E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 Gene3D G3DSA:3.90.180.10 1 165 3.7E-56 T 25-04-2017 IPR011032 GroES-like A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 Pfam PF00107 Zinc-binding dehydrogenase 172 298 1.2E-27 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS11705 03d23877d0724bb4c49aaeb9ca6c1869 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 2.1E-27 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 Pfam PF00149 Calcineurin-like phosphoesterase 9 227 7.2E-13 T 25-04-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 SUPERFAMILY SSF56300 2 299 2.24E-75 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 SUPERFAMILY SSF55816 317 530 7.59E-23 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 ProSitePatterns PS00786 5'-nucleotidase signature 2. 87 98 - T 25-04-2017 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 Gene3D G3DSA:3.60.21.10 3 297 3.8E-82 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 Pfam PF02872 5'-nucleotidase, C-terminal domain 322 472 7.5E-21 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 Gene3D G3DSA:3.90.780.10 321 530 2.0E-20 T 25-04-2017 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 PRINTS PR01607 Apyrase family signature 6 24 2.1E-10 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 PRINTS PR01607 Apyrase family signature 183 200 2.1E-10 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 PRINTS PR01607 Apyrase family signature 210 233 2.1E-10 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS05990 dfc4019b457ba2ed4950fe69f6938162 616 PRINTS PR01607 Apyrase family signature 237 257 2.1E-10 T 25-04-2017 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Pfam PF02321 Outer membrane efflux protein 271 446 2.4E-21 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Pfam PF02321 Outer membrane efflux protein 60 244 7.1E-22 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Gene3D G3DSA:1.20.1600.10 339 451 1.6E-71 T 25-04-2017 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Gene3D G3DSA:1.20.1600.10 52 86 1.6E-71 T 25-04-2017 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Gene3D G3DSA:1.20.1600.10 132 303 1.6E-71 T 25-04-2017 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 451 3.7E-66 T 25-04-2017 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 SUPERFAMILY SSF56954 5 451 7.98E-82 T 25-04-2017 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Gene3D G3DSA:2.20.200.10 112 131 9.0E-9 T 25-04-2017 A4U88_RS08970 b0cb3ec274b9f508d5c231e450bae5ee 455 Gene3D G3DSA:2.20.200.10 304 336 9.0E-9 T 25-04-2017 A4U88_RS09415 b56622083c0208cfea02070105515522 131 Gene3D G3DSA:3.30.1330.40 5 131 4.1E-36 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS09415 b56622083c0208cfea02070105515522 131 SUPERFAMILY SSF55298 9 130 1.73E-30 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS09415 b56622083c0208cfea02070105515522 131 Pfam PF01042 Endoribonuclease L-PSP 21 129 2.6E-21 T 25-04-2017 IPR006175 YjgF/YER057c/UK114 family A4U88_RS20280 3cb7b1547146fb1b20ed6eedd583e661 347 Pfam PF00355 Rieske [2Fe-2S] domain 24 104 1.7E-18 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS20280 3cb7b1547146fb1b20ed6eedd583e661 347 Gene3D G3DSA:2.102.10.10 23 136 2.7E-29 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS20280 3cb7b1547146fb1b20ed6eedd583e661 347 SUPERFAMILY SSF55961 137 337 6.52E-49 T 25-04-2017 A4U88_RS20280 3cb7b1547146fb1b20ed6eedd583e661 347 SUPERFAMILY SSF50022 5 130 7.46E-32 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS07790 f2f96d1a818012439b47f4453f24d245 445 Pfam PF13489 Methyltransferase domain 30 143 3.8E-13 T 25-04-2017 A4U88_RS07790 f2f96d1a818012439b47f4453f24d245 445 Gene3D G3DSA:3.40.50.150 27 164 4.5E-26 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS07790 f2f96d1a818012439b47f4453f24d245 445 SUPERFAMILY SSF53335 12 191 3.22E-24 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 Pfam PF08281 Sigma-70, region 4 110 163 4.9E-14 T 25-04-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 Gene3D G3DSA:1.10.1740.10 9 103 2.9E-11 T 25-04-2017 A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 SUPERFAMILY SSF88946 9 100 8.24E-14 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 Pfam PF04542 Sigma-70 region 2 15 80 1.9E-12 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 163 1.5E-18 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 SUPERFAMILY SSF88659 109 163 7.63E-12 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS11240 6d5b58931803d304e781a0fe9364e9a5 174 Gene3D G3DSA:1.10.10.10 110 163 2.3E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 SUPERFAMILY SSF48256 7 424 2.49E-165 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 Gene3D G3DSA:1.10.580.10 53 281 2.0E-95 T 25-04-2017 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 Gene3D G3DSA:1.10.230.10 282 375 5.7E-43 T 25-04-2017 IPR016143 Citrate synthase-like, small alpha subdomain Reactome: R-HSA-163765|Reactome: R-HSA-75105 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 ProSitePatterns PS00480 Citrate synthase signature. 304 316 - T 25-04-2017 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PIRSF PIRSF001369 39 430 4.6E-173 T 25-04-2017 IPR024176 Citrate synthase, bacterial-type A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 423 1.7E-236 T 25-04-2017 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 Pfam PF00285 Citrate synthase, C-terminal domain 47 412 1.2E-132 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 220 235 2.1E-56 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 361 377 2.1E-56 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 166 179 2.1E-56 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 242 270 2.1E-56 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 381 395 2.1E-56 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS05945 7b32e471311a8eda5372400f095c8c77 430 PRINTS PR00143 Citrate synthase signature 297 317 2.1E-56 T 25-04-2017 IPR002020 Citrate synthase GO:0046912 A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 Pfam PF00005 ABC transporter 21 169 1.4E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 Pfam PF09383 NIL domain 268 339 4.9E-19 T 25-04-2017 IPR018449 NIL domain A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 Gene3D G3DSA:3.30.70.260 238 343 2.1E-31 T 25-04-2017 A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 SUPERFAMILY SSF52540 1 240 2.6E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 Gene3D G3DSA:3.40.50.300 1 237 1.4E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 2.5E-198 T 25-04-2017 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 SUPERFAMILY SSF55021 248 343 6.07E-25 T 25-04-2017 A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 SMART SM00930 265 340 1.3E-25 T 25-04-2017 IPR018449 NIL domain A4U88_RS19100 326557032f4b58cde65153c63a934a62 343 SMART SM00382 30 217 1.6E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 4 169 35.746 T 25-04-2017 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 SUPERFAMILY SSF53155 9 91 4.32E-7 T 25-04-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 Gene3D G3DSA:1.10.10.10 86 168 9.4E-38 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 25-04-2017 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 SUPERFAMILY SSF46767 86 168 3.01E-34 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 2.9E-35 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 3.6E-38 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS12495 c8dc828fb6ca87f13636f528c76d9e44 174 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 10 82 1.7E-10 T 25-04-2017 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 SUPERFAMILY SSF47616 171 324 3.76E-35 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 6.0E-24 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 SUPERFAMILY SSF52833 43 99 5.7E-14 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 SUPERFAMILY SSF52833 126 163 5.7E-14 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 Gene3D G3DSA:1.20.1050.10 180 289 3.8E-28 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 Pfam PF13410 Glutathione S-transferase, C-terminal domain 204 257 3.2E-12 T 25-04-2017 A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 Gene3D G3DSA:3.40.30.10 40 179 7.9E-21 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21210 1ae2b6c98f23830dab983bd90c048008 328 PIRSF PIRSF015753 5 324 9.2E-132 T 25-04-2017 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 A4U88_RS20750 dc6b2bed1776048a4982f79f96761e1c 469 Pfam PF11471 Maltoporin periplasmic N-terminal extension 3 54 9.3E-18 T 25-04-2017 IPR021570 LamB-type porin N-terminal domain A4U88_RS20750 dc6b2bed1776048a4982f79f96761e1c 469 SUPERFAMILY SSF57997 27 87 7.63E-7 T 25-04-2017 A4U88_RS20750 dc6b2bed1776048a4982f79f96761e1c 469 Pfam PF16966 Porin-like glycoporin RafY 104 469 7.3E-186 T 25-04-2017 IPR016963 Glycoporin RafY A4U88_RS06210 a7c0302ede070d2e1bb034f45172f6e0 229 SUPERFAMILY SSF161098 5 219 2.88E-52 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06210 a7c0302ede070d2e1bb034f45172f6e0 229 Gene3D G3DSA:1.10.3720.10 8 226 6.1E-46 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06210 a7c0302ede070d2e1bb034f45172f6e0 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 226 3.5E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06210 a7c0302ede070d2e1bb034f45172f6e0 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 13 220 4.6E-75 T 25-04-2017 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 A4U88_RS22960 fe6df7b41fc8ad63619430339872300e 225 Pfam PF00005 ABC transporter 23 166 8.3E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS22960 fe6df7b41fc8ad63619430339872300e 225 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22960 fe6df7b41fc8ad63619430339872300e 225 SMART SM00382 32 214 1.0E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS22960 fe6df7b41fc8ad63619430339872300e 225 SUPERFAMILY SSF52540 6 212 4.14E-54 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22960 fe6df7b41fc8ad63619430339872300e 225 Gene3D G3DSA:3.40.50.300 2 212 6.2E-60 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 Gene3D G3DSA:2.40.33.10 73 168 1.9E-32 T 25-04-2017 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 SUPERFAMILY SSF50800 70 167 2.97E-29 T 25-04-2017 IPR011037 Pyruvate kinase-like, insert domain A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 SUPERFAMILY SSF52935 323 469 2.49E-35 T 25-04-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 Gene3D G3DSA:3.20.20.60 169 326 1.8E-115 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 Gene3D G3DSA:3.20.20.60 2 72 1.8E-115 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 1.1E-187 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 7.7E-152 T 25-04-2017 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 SUPERFAMILY SSF51621 1 74 7.33E-101 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 SUPERFAMILY SSF51621 156 338 7.33E-101 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 2.4E-28 T 25-04-2017 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 25-04-2017 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 Gene3D G3DSA:3.40.1380.20 327 468 1.1E-44 T 25-04-2017 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS10715 4ec598f2592535017b7203a354c8fcf3 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 2.0E-77 T 25-04-2017 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 A4U88_RS18580 67b4a8ed94befacb2e617ede3d851cbb 168 Pfam PF14437 MafB19-like deaminase 5 149 1.3E-31 T 25-04-2017 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 A4U88_RS18580 67b4a8ed94befacb2e617ede3d851cbb 168 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 92 - T 25-04-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 A4U88_RS18580 67b4a8ed94befacb2e617ede3d851cbb 168 SUPERFAMILY SSF53927 4 155 3.35E-58 T 25-04-2017 IPR016193 Cytidine deaminase-like GO:0003824 A4U88_RS18580 67b4a8ed94befacb2e617ede3d851cbb 168 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 10 151 48.458 T 25-04-2017 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 A4U88_RS18580 67b4a8ed94befacb2e617ede3d851cbb 168 Gene3D G3DSA:3.40.140.10 3 148 2.6E-60 T 25-04-2017 A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 Gene3D G3DSA:3.40.50.1820 2 250 1.5E-53 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 3 250 1.1E-82 T 25-04-2017 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185 A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 Pfam PF00561 alpha/beta hydrolase fold 14 129 1.8E-12 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 SUPERFAMILY SSF53474 2 250 1.71E-52 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 3.2E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 PRINTS PR00111 Alpha/beta hydrolase fold signature 196 210 3.2E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 3.2E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS14850 14a9cedf72c604ca83b09449966e0630 253 PRINTS PR00111 Alpha/beta hydrolase fold signature 97 110 3.2E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS09210 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Gene3D G3DSA:1.10.1200.10 3 76 3.4E-34 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS09210 7546342fdd6ce8031c9e2a5ef69dd3ee 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 1.1E-36 T 25-04-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS09210 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.9E-15 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS09210 7546342fdd6ce8031c9e2a5ef69dd3ee 78 SUPERFAMILY SSF47336 2 76 9.55E-23 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS09210 7546342fdd6ce8031c9e2a5ef69dd3ee 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 21.925 T 25-04-2017 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS09210 7546342fdd6ce8031c9e2a5ef69dd3ee 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 25-04-2017 IPR006162 Phosphopantetheine attachment site A4U88_RS00965 fac644af7331b77f66f10d5e5c1dddd6 176 Pfam PF09335 SNARE associated Golgi protein 41 164 1.2E-13 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS10000 1038eaadeab03b43d751cda6a79c113b 138 Pfam PF09391 Protein of unknown function (DUF2000) 7 138 1.2E-25 T 25-04-2017 IPR018988 Protein of unknown function DUF2000 A4U88_RS10000 1038eaadeab03b43d751cda6a79c113b 138 SUPERFAMILY SSF102462 6 138 1.94E-23 T 25-04-2017 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 A4U88_RS10000 1038eaadeab03b43d751cda6a79c113b 138 Gene3D G3DSA:3.40.1490.10 5 138 2.8E-23 T 25-04-2017 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 Gene3D G3DSA:3.60.15.10 30 287 6.0E-24 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 123 144 2.1E-28 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 277 288 2.1E-28 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 232 243 2.1E-28 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 96 114 2.1E-28 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 251 264 2.1E-28 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 PIRSF PIRSF000962 4 326 4.3E-102 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 100 114 - T 25-04-2017 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 Pfam PF02112 cAMP phosphodiesterases class-II 23 321 5.1E-47 T 25-04-2017 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 A4U88_RS05900 bb6d354737245bd8dd463a6255d1de0b 326 SUPERFAMILY SSF56281 24 306 8.26E-22 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS00570 753d744e9fef9515d2240b5065bbc093 293 Pfam PF00483 Nucleotidyl transferase 2 238 6.5E-70 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS00570 753d744e9fef9515d2240b5065bbc093 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 1.3E-157 T 25-04-2017 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 A4U88_RS00570 753d744e9fef9515d2240b5065bbc093 293 SUPERFAMILY SSF53448 1 286 2.93E-91 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS00570 753d744e9fef9515d2240b5065bbc093 293 Gene3D G3DSA:3.90.550.10 1 263 3.6E-65 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS07370 9f89fc4a6b00b491ee9562baa2551285 541 Gene3D G3DSA:3.20.20.70 50 517 2.1E-123 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS07370 9f89fc4a6b00b491ee9562baa2551285 541 PIRSF PIRSF500060 12 532 2.8E-234 T 25-04-2017 IPR027283 Glutamate synthase large subunit-like protein, bacteria A4U88_RS07370 9f89fc4a6b00b491ee9562baa2551285 541 SUPERFAMILY SSF51395 7 503 6.8E-138 T 25-04-2017 A4U88_RS07370 9f89fc4a6b00b491ee9562baa2551285 541 PIRSF PIRSF006429 6 541 3.8E-163 T 25-04-2017 IPR024188 Glutamate synthase large subunit-like protein A4U88_RS07370 9f89fc4a6b00b491ee9562baa2551285 541 Pfam PF01645 Conserved region in glutamate synthase 158 475 3.0E-84 T 25-04-2017 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 SMART SM00279 162 197 3.6E-9 T 25-04-2017 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 Gene3D G3DSA:3.40.50.1010 4 174 2.8E-50 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 249 4.2E-24 T 25-04-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 SUPERFAMILY SSF88723 4 159 2.99E-40 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 44.887 T 25-04-2017 IPR022895 Flap endonuclease Xni GO:0048256 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 158 3.2E-32 T 25-04-2017 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 Gene3D G3DSA:1.10.150.20 175 234 1.4E-23 T 25-04-2017 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 SUPERFAMILY SSF47807 160 244 3.44E-23 T 25-04-2017 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 A4U88_RS19345 165f5594e2749d513d95f596058c5f1b 252 SMART SM00475 3 250 6.0E-90 T 25-04-2017 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 Gene3D G3DSA:3.10.20.70 25 136 3.3E-9 T 25-04-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 Gene3D G3DSA:3.30.590.10 137 458 4.2E-93 T 25-04-2017 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 SUPERFAMILY SSF55931 134 469 2.5E-102 T 25-04-2017 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 SUPERFAMILY SSF54368 26 132 4.97E-9 T 25-04-2017 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 SMART SM01230 133 390 8.9E-99 T 25-04-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 271 286 - T 25-04-2017 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 A4U88_RS16260 f1487729f69ca21a59acb8851c56314d 472 Pfam PF00120 Glutamine synthetase, catalytic domain 134 467 1.7E-103 T 25-04-2017 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 A4U88_RS07375 296dcf396d8affe71aa32d8faac1ac34 196 SMART SM00421 138 195 0.0039 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS07375 296dcf396d8affe71aa32d8faac1ac34 196 SUPERFAMILY SSF46894 132 191 1.12E-8 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS07375 296dcf396d8affe71aa32d8faac1ac34 196 Gene3D G3DSA:1.10.10.10 132 190 1.0E-6 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS24035 6d9a379d5bd27c8501126f9f39a8ae76 295 SUPERFAMILY SSF53822 26 294 1.2E-86 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS24035 6d9a379d5bd27c8501126f9f39a8ae76 295 Pfam PF13407 Periplasmic binding protein domain 29 281 6.3E-59 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS24035 6d9a379d5bd27c8501126f9f39a8ae76 295 Gene3D G3DSA:3.40.50.2300 27 144 2.7E-43 T 25-04-2017 A4U88_RS24035 6d9a379d5bd27c8501126f9f39a8ae76 295 Gene3D G3DSA:3.40.50.2300 145 295 9.0E-55 T 25-04-2017 A4U88_RS21445 c97132544f1abeb236f7820489b77600 404 Gene3D G3DSA:2.130.10.10 37 401 5.5E-105 T 25-04-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 A4U88_RS21445 c97132544f1abeb236f7820489b77600 404 SUPERFAMILY SSF51004 48 157 5.23E-42 T 25-04-2017 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain A4U88_RS21445 c97132544f1abeb236f7820489b77600 404 SUPERFAMILY SSF51004 194 381 5.23E-42 T 25-04-2017 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain A4U88_RS21445 c97132544f1abeb236f7820489b77600 404 Pfam PF10282 Lactonase, 7-bladed beta-propeller 39 399 5.0E-110 T 25-04-2017 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 A4U88_RS21780 72b3005c36aa1cae16fce58e3fd32d07 86 Gene3D G3DSA:3.30.1660.10 18 85 2.7E-21 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS21780 72b3005c36aa1cae16fce58e3fd32d07 86 SUPERFAMILY SSF159871 3 86 4.71E-21 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS21780 72b3005c36aa1cae16fce58e3fd32d07 86 Pfam PF07338 Protein of unknown function (DUF1471) 35 85 2.8E-15 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS21045 548ece37a42c2c299977ec270dfb12f8 228 Gene3D G3DSA:1.10.10.10 3 62 6.7E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21045 548ece37a42c2c299977ec270dfb12f8 228 SUPERFAMILY SSF46785 5 61 6.22E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21045 548ece37a42c2c299977ec270dfb12f8 228 Pfam PF13280 WYL domain 138 223 1.2E-14 T 25-04-2017 IPR026881 WYL domain A4U88_RS21045 548ece37a42c2c299977ec270dfb12f8 228 Pfam PF08279 HTH domain 5 59 6.3E-16 T 25-04-2017 IPR013196 Helix-turn-helix, type 11 A4U88_RS14765 fe1f65f175dd9612d69f36c9bd100e21 155 SMART SM00871 1 153 2.0E-33 T 25-04-2017 IPR010499 Bacterial transcription activator, effector binding A4U88_RS14765 fe1f65f175dd9612d69f36c9bd100e21 155 SUPERFAMILY SSF55136 1 154 7.15E-39 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS14765 fe1f65f175dd9612d69f36c9bd100e21 155 Gene3D G3DSA:3.20.80.10 1 154 1.4E-42 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS14765 fe1f65f175dd9612d69f36c9bd100e21 155 Hamap MF_01896 DNA gyrase inhibitor [sbmC]. 1 155 37.431 T 25-04-2017 IPR024911 DNA gyrase inhibitor GyrI GO:0008657 A4U88_RS14765 fe1f65f175dd9612d69f36c9bd100e21 155 Pfam PF06445 GyrI-like small molecule binding domain 1 149 2.2E-27 T 25-04-2017 IPR029442 GyrI-like small molecule binding domain A4U88_RS19460 149cbeb7395485f06ec8c6d38d55844b 290 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 287 6.3E-106 T 25-04-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 A4U88_RS19460 149cbeb7395485f06ec8c6d38d55844b 290 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 25-04-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 A4U88_RS19460 149cbeb7395485f06ec8c6d38d55844b 290 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 279 1.2E-79 T 25-04-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 A4U88_RS19460 149cbeb7395485f06ec8c6d38d55844b 290 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 284 20.577 T 25-04-2017 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 A4U88_RS15355 b70500b02c779ecefd098f032dea6b1c 304 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 160 255 1.3E-10 T 25-04-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS15355 b70500b02c779ecefd098f032dea6b1c 304 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 30 116 1.8E-5 T 25-04-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS15355 b70500b02c779ecefd098f032dea6b1c 304 SUPERFAMILY SSF50475 197 287 2.48E-6 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS15355 b70500b02c779ecefd098f032dea6b1c 304 Gene3D G3DSA:2.30.110.10 29 117 9.8E-7 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS15355 b70500b02c779ecefd098f032dea6b1c 304 Gene3D G3DSA:2.30.110.10 158 253 1.2E-8 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS15355 b70500b02c779ecefd098f032dea6b1c 304 SUPERFAMILY SSF50475 29 84 2.62E-5 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS16355 9d19e85fdfe7fbeb58a562dc6bbbe73f 386 PIRSF PIRSF000014 2 382 1.3E-144 T 25-04-2017 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 A4U88_RS16355 9d19e85fdfe7fbeb58a562dc6bbbe73f 386 SUPERFAMILY SSF46626 323 374 8.48E-5 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS16355 9d19e85fdfe7fbeb58a562dc6bbbe73f 386 SUPERFAMILY SSF48695 14 184 4.32E-50 T 25-04-2017 IPR011031 Multihaem cytochrome A4U88_RS16355 9d19e85fdfe7fbeb58a562dc6bbbe73f 386 Gene3D G3DSA:1.10.3820.10 10 183 2.6E-29 T 25-04-2017 A4U88_RS16355 9d19e85fdfe7fbeb58a562dc6bbbe73f 386 Gene3D G3DSA:1.10.3820.10 328 333 2.6E-29 T 25-04-2017 A4U88_RS16355 9d19e85fdfe7fbeb58a562dc6bbbe73f 386 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 182 2.0E-67 T 25-04-2017 IPR005126 NapC/NirT cytochrome c, N-terminal A4U88_RS15430 e11147719bb15d07480f0c8ec779dadd 858 Pfam PF13953 PapC C-terminal domain 777 843 2.7E-18 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS15430 e11147719bb15d07480f0c8ec779dadd 858 SUPERFAMILY SSF141729 64 177 4.97E-32 T 25-04-2017 A4U88_RS15430 e11147719bb15d07480f0c8ec779dadd 858 Pfam PF00577 Outer membrane usher protein 203 768 1.8E-199 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS15430 e11147719bb15d07480f0c8ec779dadd 858 Pfam PF13954 PapC N-terminal domain 40 185 2.4E-45 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS15430 e11147719bb15d07480f0c8ec779dadd 858 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 320 330 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS23790 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 25-04-2017 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23790 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 Pfam PF00471 Ribosomal protein L33 7 53 1.2E-18 T 25-04-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS23790 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.87 T 25-04-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS23790 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 2.6E-27 T 25-04-2017 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS23790 03ffe2b4e7ddad27f8ef8fdb5ae1e84f 55 SUPERFAMILY SSF57829 1 53 4.39E-20 T 25-04-2017 IPR011332 Zinc-binding ribosomal protein GO:0006412 A4U88_RS00290 39b4b423c8a7a83bbe206158fdecd82e 399 Gene3D G3DSA:1.20.1250.20 211 394 2.1E-20 T 25-04-2017 A4U88_RS00290 39b4b423c8a7a83bbe206158fdecd82e 399 Gene3D G3DSA:1.20.1250.20 9 192 8.5E-14 T 25-04-2017 A4U88_RS00290 39b4b423c8a7a83bbe206158fdecd82e 399 Pfam PF07690 Major Facilitator Superfamily 24 351 1.8E-23 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS00290 39b4b423c8a7a83bbe206158fdecd82e 399 SUPERFAMILY SSF103473 8 395 5.36E-50 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 Pfam PF01546 Peptidase family M20/M25/M40 66 368 2.2E-30 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 10 359 2.6E-114 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 Pfam PF07687 Peptidase dimerisation domain 178 273 4.1E-11 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 Gene3D G3DSA:3.30.70.360 174 290 1.7E-39 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 SUPERFAMILY SSF53187 3 190 1.32E-80 T 25-04-2017 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 SUPERFAMILY SSF53187 291 374 1.32E-80 T 25-04-2017 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 PIRSF PIRSF005962 1 376 1.4E-118 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 Gene3D G3DSA:3.40.630.10 3 171 2.3E-93 T 25-04-2017 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 Gene3D G3DSA:3.40.630.10 291 382 2.3E-93 T 25-04-2017 A4U88_RS05550 014af65b5494f267f6a5985d4b6bcff7 387 SUPERFAMILY SSF55031 176 288 1.96E-29 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.443 T 25-04-2017 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 3.2E-70 T 25-04-2017 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 Gene3D G3DSA:2.40.50.140 1 123 2.8E-65 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PIRSF PIRSF002133 1 124 2.7E-54 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 Pfam PF00164 Ribosomal protein S12/S23 5 123 2.0E-43 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.5E-60 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.5E-60 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.5E-60 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.5E-60 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.5E-60 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.5E-60 T 25-04-2017 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22380 793e9660511a3832eb2c3783b6a2f9bb 124 SUPERFAMILY SSF50249 3 123 8.57E-52 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS11035 2a9b0fe3faee5c1e66b686797ed22633 332 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 25-04-2017 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 A4U88_RS11035 2a9b0fe3faee5c1e66b686797ed22633 332 Gene3D G3DSA:3.20.20.140 5 331 8.3E-99 T 25-04-2017 A4U88_RS11035 2a9b0fe3faee5c1e66b686797ed22633 332 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.407 T 25-04-2017 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 A4U88_RS11035 2a9b0fe3faee5c1e66b686797ed22633 332 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 3.7E-109 T 25-04-2017 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 A4U88_RS11035 2a9b0fe3faee5c1e66b686797ed22633 332 SUPERFAMILY SSF51556 5 327 1.28E-78 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS11035 2a9b0fe3faee5c1e66b686797ed22633 332 Pfam PF00962 Adenosine/AMP deaminase 6 327 2.3E-93 T 25-04-2017 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 PIRSF PIRSF000103 1 297 2.9E-60 T 25-04-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 Gene3D G3DSA:3.40.50.720 8 169 1.4E-42 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 166 8.5E-38 T 25-04-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 SUPERFAMILY SSF51735 9 168 5.32E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 11 24 - T 25-04-2017 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 SUPERFAMILY SSF48179 171 293 1.47E-36 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 Gene3D G3DSA:1.10.1040.10 172 293 4.7E-44 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS07280 3844c590b1d8488cd9d94a00f2920249 304 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 172 291 3.9E-35 T 25-04-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 A4U88_RS07695 53133d150c80bfde4e5a31133e2f3bf5 230 Pfam PF00534 Glycosyl transferases group 1 46 199 1.8E-26 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS07695 53133d150c80bfde4e5a31133e2f3bf5 230 SUPERFAMILY SSF53756 4 221 9.87E-54 T 25-04-2017 A4U88_RS07695 53133d150c80bfde4e5a31133e2f3bf5 230 Gene3D G3DSA:3.40.50.2000 44 200 1.0E-20 T 25-04-2017 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 SUPERFAMILY SSF51366 13 240 1.8E-79 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 25-04-2017 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 14 242 39.833 T 25-04-2017 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 SMART SM00934 16 237 5.9E-100 T 25-04-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 237 9.0E-54 T 25-04-2017 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 Gene3D G3DSA:3.20.20.70 13 241 2.6E-90 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS12855 51cfc7b030fc360ff43d088851cb6379 242 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 18 238 2.8E-56 T 25-04-2017 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS15175 ff02cef52c29be148bb27346e5e7cadf 363 Gene3D G3DSA:3.55.50.10 121 185 9.1E-4 T 25-04-2017 A4U88_RS15175 ff02cef52c29be148bb27346e5e7cadf 363 Pfam PF05954 Phage late control gene D protein (GPD) 93 344 2.2E-31 T 25-04-2017 A4U88_RS15175 ff02cef52c29be148bb27346e5e7cadf 363 SUPERFAMILY SSF69279 16 189 1.36E-25 T 25-04-2017 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 SMART SM00388 264 328 0.0041 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 375 475 5.4E-13 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 Pfam PF08918 PhoQ Sensor 8 185 1.8E-90 T 25-04-2017 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 8.4E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 8.4E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 SMART SM00387 373 479 1.1E-22 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 Pfam PF00672 HAMP domain 193 258 5.6E-8 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 SUPERFAMILY SSF47384 247 329 1.0E-5 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 SUPERFAMILY SSF55874 320 477 2.62E-30 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS09855 261b31834080dc3dd8dfa6c8894b22b3 485 Gene3D G3DSA:3.30.565.10 339 479 5.8E-31 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS12970 d08b15320747d64bec846378054b5bbb 348 Pfam PF08496 Peptidase family S49 N-terminal 2 157 1.7E-59 T 25-04-2017 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 A4U88_RS12970 d08b15320747d64bec846378054b5bbb 348 Gene3D G3DSA:3.90.226.10 99 204 7.3E-34 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS12970 d08b15320747d64bec846378054b5bbb 348 Gene3D G3DSA:3.90.226.10 270 300 7.3E-34 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS12970 d08b15320747d64bec846378054b5bbb 348 SUPERFAMILY SSF52096 98 208 7.79E-31 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS12970 d08b15320747d64bec846378054b5bbb 348 SUPERFAMILY SSF52096 239 298 7.79E-31 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS12970 d08b15320747d64bec846378054b5bbb 348 Pfam PF01343 Peptidase family S49 161 300 3.9E-45 T 25-04-2017 IPR002142 Peptidase S49 GO:0006508|GO:0008233 A4U88_RS16430 8156df09a3b79736899afba61632971a 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 3.9E-26 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16430 8156df09a3b79736899afba61632971a 341 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 6 46 1.3E-6 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS16430 8156df09a3b79736899afba61632971a 341 SUPERFAMILY SSF161098 135 321 3.4E-17 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16430 8156df09a3b79736899afba61632971a 341 Gene3D G3DSA:1.10.3720.10 134 337 3.2E-17 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17695 a587d86e4e7cf47f0cd99a760e3d1cd0 151 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 33.057 T 25-04-2017 IPR003791 Protein of unknown function UPF0178 A4U88_RS17695 a587d86e4e7cf47f0cd99a760e3d1cd0 151 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 144 6.2E-51 T 25-04-2017 IPR003791 Protein of unknown function UPF0178 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 1.0E-17 T 25-04-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 Pfam PF00384 Molybdopterin oxidoreductase 2 378 1.4E-23 T 25-04-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 Gene3D G3DSA:2.40.40.20 605 803 1.7E-50 T 25-04-2017 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 25-04-2017 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 Gene3D G3DSA:3.40.50.740 320 470 5.1E-61 T 25-04-2017 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 Gene3D G3DSA:3.40.228.10 152 261 9.9E-71 T 25-04-2017 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 Gene3D G3DSA:3.40.228.10 1 108 9.9E-71 T 25-04-2017 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 SUPERFAMILY SSF53706 1 638 1.44E-234 T 25-04-2017 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 25-04-2017 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 SUPERFAMILY SSF50692 674 803 1.72E-44 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS00200 1c26246029837f710c1eea16d6f28b5a 803 SUPERFAMILY SSF50692 617 647 1.72E-44 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS14720 71850bc9e90879a9990c1bc7376c2db6 257 Gene3D G3DSA:3.60.40.10 2 234 9.7E-47 T 25-04-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 A4U88_RS14720 71850bc9e90879a9990c1bc7376c2db6 257 SMART SM00332 1 233 2.4E-8 T 25-04-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 A4U88_RS14720 71850bc9e90879a9990c1bc7376c2db6 257 Pfam PF13672 Protein phosphatase 2C 8 198 2.3E-14 T 25-04-2017 A4U88_RS14720 71850bc9e90879a9990c1bc7376c2db6 257 SMART SM00331 1 235 9.2E-5 T 25-04-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 A4U88_RS14720 71850bc9e90879a9990c1bc7376c2db6 257 SUPERFAMILY SSF81606 1 235 4.71E-46 T 25-04-2017 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 A4U88_RS21940 e706d86ff61c14a6f421cef7a904c924 327 Gene3D G3DSA:3.90.245.10 2 325 4.7E-77 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS21940 e706d86ff61c14a6f421cef7a904c924 327 SUPERFAMILY SSF53590 2 324 3.4E-69 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS21940 e706d86ff61c14a6f421cef7a904c924 327 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 316 9.2E-51 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS16460 a918ddb8e0b61d982c619206ece9450a 94 SUPERFAMILY SSF50715 1 94 3.14E-30 T 25-04-2017 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS16460 a918ddb8e0b61d982c619206ece9450a 94 Pfam PF01386 Ribosomal L25p family 4 91 6.1E-25 T 25-04-2017 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 A4U88_RS16460 a918ddb8e0b61d982c619206ece9450a 94 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 94 28.467 T 25-04-2017 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 A4U88_RS16460 a918ddb8e0b61d982c619206ece9450a 94 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 6 93 7.0E-38 T 25-04-2017 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 A4U88_RS16460 a918ddb8e0b61d982c619206ece9450a 94 Gene3D G3DSA:2.40.240.10 1 94 5.0E-35 T 25-04-2017 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 A4U88_RS21825 4305c0b7b2d448cdf119e6cd84124468 117 Pfam PF04237 YjbR 12 102 1.1E-17 T 25-04-2017 IPR007351 Uncharacterised protein YjbR A4U88_RS21825 4305c0b7b2d448cdf119e6cd84124468 117 SUPERFAMILY SSF142906 1 115 6.54E-34 T 25-04-2017 A4U88_RS04265 bf394662e0b02cdc1d71b17ee044c0f5 181 SUPERFAMILY SSF49401 34 180 3.58E-32 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS04265 bf394662e0b02cdc1d71b17ee044c0f5 181 Gene3D G3DSA:2.60.40.1090 33 180 1.4E-26 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS13625 c13aeba73281d710f0b6e4f8e7a20818 271 Gene3D G3DSA:3.20.20.410 2 169 3.2E-53 T 25-04-2017 IPR002763 Protein of unknown function DUF72 A4U88_RS13625 c13aeba73281d710f0b6e4f8e7a20818 271 SUPERFAMILY SSF117396 2 187 3.53E-49 T 25-04-2017 IPR002763 Protein of unknown function DUF72 A4U88_RS13625 c13aeba73281d710f0b6e4f8e7a20818 271 Pfam PF01904 Protein of unknown function DUF72 21 167 5.9E-36 T 25-04-2017 IPR002763 Protein of unknown function DUF72 A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 Gene3D G3DSA:3.40.50.720 10 255 8.7E-81 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 SUPERFAMILY SSF51735 12 254 6.77E-79 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 198 0.0055 T 25-04-2017 A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 1.0E-6 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.0E-6 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.0E-6 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 88 99 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02665 2743a5e40d9f0e66fad7c91bcc95d54c 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 252 2.1E-64 T 25-04-2017 A4U88_RS22435 aeb11b99c44430964a687a60cf0b11ee 67 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 55 2.0E-21 T 25-04-2017 IPR012658 Conserved hypothetical protein CHP02443 A4U88_RS22435 aeb11b99c44430964a687a60cf0b11ee 67 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 4 61 4.2E-30 T 25-04-2017 IPR012658 Conserved hypothetical protein CHP02443 A4U88_RS22435 aeb11b99c44430964a687a60cf0b11ee 67 Gene3D G3DSA:3.30.50.10 10 49 2.7E-4 T 25-04-2017 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 Gene3D G3DSA:3.40.190.10 90 181 2.9E-11 T 25-04-2017 A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 Gene3D G3DSA:3.40.190.10 182 239 3.1E-10 T 25-04-2017 A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 SUPERFAMILY SSF46785 4 113 4.67E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 SUPERFAMILY SSF53850 84 280 1.86E-22 T 25-04-2017 A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 Gene3D G3DSA:1.10.10.10 5 87 2.6E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 Pfam PF03466 LysR substrate binding domain 90 278 2.4E-21 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS13090 264b2b59704fff1ee0245505f9c17525 281 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 5.0E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11380 a0571d320fb1cee2025cec0693e971ea 350 Gene3D G3DSA:3.60.70.12 28 294 9.7E-96 T 25-04-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS11380 a0571d320fb1cee2025cec0693e971ea 350 SUPERFAMILY SSF56266 29 298 2.17E-76 T 25-04-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS11380 a0571d320fb1cee2025cec0693e971ea 350 Pfam PF03576 Peptidase family S58 37 294 2.7E-86 T 25-04-2017 IPR005321 Peptidase S58, DmpA A4U88_RS17995 c2c867b5746e4f480f095dc8484474d3 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 25-04-2017 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS17995 c2c867b5746e4f480f095dc8484474d3 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 32.009 T 25-04-2017 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 A4U88_RS17995 c2c867b5746e4f480f095dc8484474d3 212 Gene3D G3DSA:3.40.50.170 2 207 2.1E-73 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS17995 c2c867b5746e4f480f095dc8484474d3 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 191 6.4E-82 T 25-04-2017 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 A4U88_RS17995 c2c867b5746e4f480f095dc8484474d3 212 SUPERFAMILY SSF53328 2 206 5.63E-68 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS17995 c2c867b5746e4f480f095dc8484474d3 212 Pfam PF00551 Formyl transferase 2 182 2.8E-67 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS14620 ed8df5349e602aa4a92b14902ad175d0 355 Pfam PF00805 Pentapeptide repeats (8 copies) 121 158 2.3E-4 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14620 ed8df5349e602aa4a92b14902ad175d0 355 Pfam PF00805 Pentapeptide repeats (8 copies) 271 309 6.8E-6 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14620 ed8df5349e602aa4a92b14902ad175d0 355 SUPERFAMILY SSF141571 19 176 4.02E-30 T 25-04-2017 A4U88_RS14620 ed8df5349e602aa4a92b14902ad175d0 355 Pfam PF13599 Pentapeptide repeats (9 copies) 172 247 1.7E-10 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14620 ed8df5349e602aa4a92b14902ad175d0 355 Pfam PF13599 Pentapeptide repeats (9 copies) 22 79 2.0E-11 T 25-04-2017 IPR001646 Pentapeptide repeat A4U88_RS14620 ed8df5349e602aa4a92b14902ad175d0 355 SUPERFAMILY SSF141571 148 319 3.14E-31 T 25-04-2017 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 PIRSF PIRSF001013 1 155 7.3E-61 T 25-04-2017 IPR001887 Barnase GO:0003723|GO:0004521 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 SUPERFAMILY SSF53933 49 154 1.3E-36 T 25-04-2017 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 Gene3D G3DSA:3.10.450.30 48 154 1.4E-42 T 25-04-2017 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 PRINTS PR00117 Barnase signature 92 110 8.3E-30 T 25-04-2017 IPR001887 Barnase GO:0003723|GO:0004521 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 PRINTS PR00117 Barnase signature 72 89 8.3E-30 T 25-04-2017 IPR001887 Barnase GO:0003723|GO:0004521 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 PRINTS PR00117 Barnase signature 113 132 8.3E-30 T 25-04-2017 IPR001887 Barnase GO:0003723|GO:0004521 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 PRINTS PR00117 Barnase signature 135 153 8.3E-30 T 25-04-2017 IPR001887 Barnase GO:0003723|GO:0004521 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 PRINTS PR00117 Barnase signature 52 69 8.3E-30 T 25-04-2017 IPR001887 Barnase GO:0003723|GO:0004521 A4U88_RS21535 78abd92a7f840b3c2fdcb88ce415c207 155 Pfam PF00545 ribonuclease 65 152 1.3E-24 T 25-04-2017 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SUPERFAMILY SSF52540 416 618 4.89E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SMART SM00957 6 402 0.0 T 25-04-2017 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SUPERFAMILY SSF81886 878 890 6.41E-86 T 25-04-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SUPERFAMILY SSF81886 620 840 6.41E-86 T 25-04-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 ProSitePatterns PS01312 SecA family signature. 500 515 - T 25-04-2017 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Pfam PF02810 SEC-C motif 882 900 9.9E-11 T 25-04-2017 IPR004027 SEC-C motif A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Pfam PF07517 SecA DEAD-like domain 7 402 3.4E-132 T 25-04-2017 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Gene3D G3DSA:3.40.50.300 417 619 2.4E-90 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Gene3D G3DSA:3.40.50.300 369 416 3.6E-125 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Gene3D G3DSA:3.40.50.300 3 228 3.6E-125 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SMART SM00958 228 358 4.1E-83 T 25-04-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Gene3D G3DSA:3.90.1440.10 230 368 1.8E-46 T 25-04-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Pfam PF01043 SecA preprotein cross-linking domain 232 358 3.0E-39 T 25-04-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.015 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Pfam PF07516 SecA Wing and Scaffold domain 617 830 2.9E-70 T 25-04-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SUPERFAMILY SSF81767 227 368 1.44E-44 T 25-04-2017 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 Gene3D G3DSA:1.10.3060.10 648 831 6.0E-61 T 25-04-2017 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 117 127 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 63 87 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 101 115 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 413 426 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 170 190 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 339 361 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 PRINTS PR00906 SecA protein signature 376 393 8.0E-74 T 25-04-2017 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SUPERFAMILY SSF52540 368 415 6.77E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03410 51126a2e7848ce2907574c12c5902d6f 902 SUPERFAMILY SSF52540 5 228 6.77E-84 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01105 0dc9b091b46c3612c138656296f07896 182 Gene3D G3DSA:3.40.630.30 2 170 3.2E-37 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS01105 0dc9b091b46c3612c138656296f07896 182 SUPERFAMILY SSF55729 1 170 3.84E-29 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS01105 0dc9b091b46c3612c138656296f07896 182 Pfam PF13673 Acetyltransferase (GNAT) domain 48 148 1.5E-12 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS19550 f2198fb001bad03e709cd0598306ac44 235 SUPERFAMILY SSF48452 33 119 9.87E-5 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS19550 f2198fb001bad03e709cd0598306ac44 235 Gene3D G3DSA:1.25.40.10 33 120 1.0E-5 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 SUPERFAMILY SSF53335 6 283 1.34E-92 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 Pfam PF01564 Spermine/spermidine synthase 6 241 3.7E-87 T 25-04-2017 A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 Gene3D G3DSA:2.30.140.10 1 54 9.1E-20 T 25-04-2017 A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 25-04-2017 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 3.8E-116 T 25-04-2017 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 39.74 T 25-04-2017 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 A4U88_RS20450 7635b064e1e0d6f772caa661dff9f1c0 287 Gene3D G3DSA:3.40.50.150 56 284 9.4E-84 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13465 85f1babbe52178211a5f7b2a0282826d 218 Gene3D G3DSA:3.90.850.10 14 217 1.9E-76 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS13465 85f1babbe52178211a5f7b2a0282826d 218 SUPERFAMILY SSF56529 12 211 9.68E-69 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS13465 85f1babbe52178211a5f7b2a0282826d 218 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 209 3.3E-53 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02925 8a9915fac9261b88b3657cc93a495155 477 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 77 209 2.6E-15 T 25-04-2017 A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 5 160 1.4E-26 T 25-04-2017 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 Gene3D G3DSA:1.10.10.10 102 165 2.4E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 SUPERFAMILY SSF88659 91 165 1.18E-15 T 25-04-2017 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 SUPERFAMILY SSF88946 6 91 1.26E-14 T 25-04-2017 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 Gene3D G3DSA:1.10.1740.10 3 77 4.5E-13 T 25-04-2017 A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 Pfam PF08281 Sigma-70, region 4 107 159 1.4E-15 T 25-04-2017 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS04635 15e6e554ad988fd96f49e8641cc07d60 166 Pfam PF04542 Sigma-70 region 2 9 76 4.1E-10 T 25-04-2017 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 A4U88_RS21295 39a06e606b6a76182f0c85e52ec5ac8d 166 Gene3D G3DSA:2.30.30.220 3 111 3.7E-53 T 25-04-2017 IPR007481 Stringent starvation protein B A4U88_RS21295 39a06e606b6a76182f0c85e52ec5ac8d 166 Pfam PF04386 Stringent starvation protein B 9 166 2.9E-42 T 25-04-2017 IPR007481 Stringent starvation protein B A4U88_RS21295 39a06e606b6a76182f0c85e52ec5ac8d 166 SUPERFAMILY SSF101738 3 116 8.89E-50 T 25-04-2017 IPR007481 Stringent starvation protein B A4U88_RS21295 39a06e606b6a76182f0c85e52ec5ac8d 166 PIRSF PIRSF005276 3 166 3.6E-61 T 25-04-2017 IPR007481 Stringent starvation protein B A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Pfam PF02938 GAD domain 307 406 1.0E-30 T 25-04-2017 IPR029351 GAD domain Reactome: R-HSA-379726 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Gene3D G3DSA:3.30.1360.30 276 413 1.3E-48 T 25-04-2017 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 586 3.1E-274 T 25-04-2017 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 Reactome: R-HSA-379726 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 SUPERFAMILY SSF50249 1 105 4.0E-33 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 1.4E-106 T 25-04-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Gene3D G3DSA:2.40.50.140 1 106 3.0E-39 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 563 37.343 T 25-04-2017 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 3.7E-15 T 25-04-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Gene3D G3DSA:3.30.930.10 414 585 1.4E-111 T 25-04-2017 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 Gene3D G3DSA:3.30.930.10 131 275 1.4E-111 T 25-04-2017 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 SUPERFAMILY SSF55261 288 419 1.21E-46 T 25-04-2017 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 SUPERFAMILY SSF55681 108 287 1.36E-105 T 25-04-2017 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 SUPERFAMILY SSF55681 420 584 1.36E-105 T 25-04-2017 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 1.2E-26 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 1.2E-26 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 1.2E-26 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS13610 83feb5111272f9d6e2f3b56d9211b005 594 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 1.2E-26 T 25-04-2017 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 Pfam PF02355 Protein export membrane protein 433 601 1.5E-16 T 25-04-2017 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 Gene3D G3DSA:1.20.1640.10 442 608 5.3E-25 T 25-04-2017 A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 SUPERFAMILY SSF82866 410 606 2.49E-41 T 25-04-2017 A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 123 601 6.0E-153 T 25-04-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 615 50.487 T 25-04-2017 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 345 594 2.0E-83 T 25-04-2017 IPR022645 Protein-export membrane protein SecD/SecF, bacterial A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 Pfam PF13721 SecD export protein N-terminal TM region 2 103 1.3E-37 T 25-04-2017 IPR027398 SecD export protein N-terminal TM domain A4U88_RS04800 121c918c87aae1ba84e04ffd4fdd8188 615 Pfam PF07549 SecD/SecF GG Motif 120 140 3.1E-6 T 25-04-2017 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 SUPERFAMILY SSF53067 1 250 2.22E-95 T 25-04-2017 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 Gene3D G3DSA:3.30.420.40 250 492 3.8E-104 T 25-04-2017 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 357 377 - T 25-04-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 247 9.7E-92 T 25-04-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 Hamap MF_00186 Glycerol kinase [glpK]. 1 492 58.883 T 25-04-2017 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 1 491 2.0E-228 T 25-04-2017 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 256 445 1.4E-61 T 25-04-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 PIRSF PIRSF000538 1 495 1.5E-179 T 25-04-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 SUPERFAMILY SSF53067 250 491 1.42E-86 T 25-04-2017 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 Gene3D G3DSA:3.30.420.40 1 248 8.8E-106 T 25-04-2017 A4U88_RS23575 7e575e0f62e9886bd231ee3624abbd9d 495 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 130 142 - T 25-04-2017 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 25-04-2017 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 5.9E-203 T 25-04-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 219.25 T 25-04-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 Gene3D G3DSA:1.10.300.10 103 195 6.1E-37 T 25-04-2017 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 25-04-2017 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 SMART SM00788 4 425 4.2E-299 T 25-04-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 Gene3D G3DSA:3.40.440.10 196 266 1.9E-70 T 25-04-2017 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 Gene3D G3DSA:3.40.440.10 3 94 1.9E-70 T 25-04-2017 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 8.1E-177 T 25-04-2017 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 Gene3D G3DSA:3.90.170.10 267 426 6.6E-68 T 25-04-2017 A4U88_RS01685 f495b953bbd3a09a6acbf24ade20c162 432 SUPERFAMILY SSF52540 3 431 1.03E-179 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS17145 2380a24d1f528403a1ca83021e369e84 370 Pfam PF03600 Citrate transporter 28 318 1.6E-22 T 25-04-2017 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 SUPERFAMILY SSF53822 25 369 1.85E-87 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 68 86 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 278 291 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 331 346 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 89 99 4.6E-63 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 Gene3D G3DSA:3.40.50.2300 26 225 2.3E-64 T 25-04-2017 A4U88_RS00865 490e896c7be0cd76f25444b952a1b29a 371 Pfam PF13458 Periplasmic binding protein 27 350 4.8E-61 T 25-04-2017 IPR028081 Leucine-binding protein domain A4U88_RS07060 730f8a4aee86f96ea94bc5c45f4f5468 283 Gene3D G3DSA:3.40.630.30 18 142 3.6E-21 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07060 730f8a4aee86f96ea94bc5c45f4f5468 283 Pfam PF13508 Acetyltransferase (GNAT) domain 209 265 3.5E-6 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS07060 730f8a4aee86f96ea94bc5c45f4f5468 283 Gene3D G3DSA:3.40.630.30 204 267 9.2E-10 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07060 730f8a4aee86f96ea94bc5c45f4f5468 283 SUPERFAMILY SSF55729 201 273 3.21E-10 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07060 730f8a4aee86f96ea94bc5c45f4f5468 283 SUPERFAMILY SSF55729 18 141 2.19E-21 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07060 730f8a4aee86f96ea94bc5c45f4f5468 283 Pfam PF00583 Acetyltransferase (GNAT) family 75 133 5.0E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 SUPERFAMILY SSF160996 190 338 3.53E-43 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 Gene3D G3DSA:2.40.30.10 188 269 1.8E-28 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.1E-8 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.1E-8 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 362 369 1.1E-8 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 Gene3D G3DSA:3.50.50.60 339 395 1.0E-55 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 Gene3D G3DSA:3.50.50.60 3 186 1.0E-55 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 392 9.0E-127 T 25-04-2017 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.5E-5 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 347 369 2.5E-5 T 25-04-2017 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 SUPERFAMILY SSF51905 3 188 6.02E-59 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 SUPERFAMILY SSF51905 337 395 6.02E-59 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 Gene3D G3DSA:1.10.8.260 270 322 2.6E-23 T 25-04-2017 IPR023166 HI0933 insert-like domain A4U88_RS23110 13ff3b0accecc7a3be0448cd5c653af9 399 Pfam PF03486 HI0933-like protein 4 392 2.4E-155 T 25-04-2017 A4U88_RS08915 9ffd824a1c6a55b012502b656b3eb48e 217 Pfam PF00857 Isochorismatase family 27 212 2.9E-38 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS08915 9ffd824a1c6a55b012502b656b3eb48e 217 Gene3D G3DSA:3.40.50.850 9 216 1.2E-47 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS08915 9ffd824a1c6a55b012502b656b3eb48e 217 SUPERFAMILY SSF52499 23 216 1.83E-41 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS05245 93005383976b748a67633d54790a69d9 387 SUPERFAMILY SSF103473 3 379 1.83E-49 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS05245 93005383976b748a67633d54790a69d9 387 Pfam PF07690 Major Facilitator Superfamily 21 340 2.2E-34 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS05245 93005383976b748a67633d54790a69d9 387 Gene3D G3DSA:1.20.1250.20 202 379 2.8E-4 T 25-04-2017 A4U88_RS05245 93005383976b748a67633d54790a69d9 387 Gene3D G3DSA:1.20.1250.20 6 186 7.0E-25 T 25-04-2017 A4U88_RS16970 529c2348d4556cbbbfc5d494d6a6f6f2 304 Gene3D G3DSA:3.40.50.720 1 246 4.8E-27 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16970 529c2348d4556cbbbfc5d494d6a6f6f2 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 215 1.1E-18 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS16970 529c2348d4556cbbbfc5d494d6a6f6f2 304 Pfam PF08338 Domain of unknown function (DUF1731) 250 295 4.5E-21 T 25-04-2017 IPR013549 Domain of unknown function DUF1731 A4U88_RS16970 529c2348d4556cbbbfc5d494d6a6f6f2 304 SUPERFAMILY SSF51735 1 298 6.34E-45 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16970 529c2348d4556cbbbfc5d494d6a6f6f2 304 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 3.7E-113 T 25-04-2017 IPR010099 Epimerase family protein SDR39U1 A4U88_RS19445 65af0f0af8c4add3d4a404be21890be5 192 PIRSF PIRSF004525 1 190 5.5E-50 T 25-04-2017 IPR016419 Prepilin peptidase-dependent protein B, predicted A4U88_RS19445 65af0f0af8c4add3d4a404be21890be5 192 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 27 1.2E-4 T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS19445 65af0f0af8c4add3d4a404be21890be5 192 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS19010 b3a12dc6e35195f6715887030c015607 248 Pfam PF03591 AzlC protein 27 167 4.9E-38 T 25-04-2017 IPR011606 Branched-chain amino acid transport, permease A4U88_RS15325 d495b59fd99102e2038e60b961c0f0f6 465 Pfam PF00324 Amino acid permease 26 448 3.1E-86 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS15325 d495b59fd99102e2038e60b961c0f0f6 465 PIRSF PIRSF006060 4 463 6.7E-68 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS15325 d495b59fd99102e2038e60b961c0f0f6 465 ProSitePatterns PS00218 Amino acid permeases signature. 50 80 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS09115 45acd7cb8c74586ae2fd8a915655d351 352 Pfam PF01594 Domain of unknown function DUF20 14 328 4.1E-73 T 25-04-2017 IPR002549 Transmembrane protein TqsA-like A4U88_RS09590 0150d4c386b0537ca0863c21f5b08225 129 SUPERFAMILY SSF51366 3 127 2.35E-31 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS09590 0150d4c386b0537ca0863c21f5b08225 129 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 127 2.0E-24 T 25-04-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 A4U88_RS09590 0150d4c386b0537ca0863c21f5b08225 129 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 129 21.21 T 25-04-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 A4U88_RS09590 0150d4c386b0537ca0863c21f5b08225 129 Gene3D G3DSA:3.20.20.70 2 128 7.3E-40 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 SUPERFAMILY SSF46785 7 114 1.53E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 Gene3D G3DSA:3.40.190.10 172 251 1.5E-10 T 25-04-2017 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 Pfam PF03466 LysR substrate binding domain 96 283 7.5E-27 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 SUPERFAMILY SSF53850 95 284 1.59E-30 T 25-04-2017 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.6E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.6E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.6E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 Gene3D G3DSA:1.10.10.10 8 91 1.9E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 Gene3D G3DSA:3.40.190.10 95 171 8.5E-23 T 25-04-2017 A4U88_RS12105 526facd3e67e08cb321a60aeb20e95c3 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 4.6E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18965 3b9877c8dfdbd458a35c27ffa1d640d7 323 Gene3D G3DSA:3.40.1090.10 8 199 9.9E-5 T 25-04-2017 A4U88_RS18965 3b9877c8dfdbd458a35c27ffa1d640d7 323 SUPERFAMILY SSF52151 5 311 8.89E-30 T 25-04-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 A4U88_RS18965 3b9877c8dfdbd458a35c27ffa1d640d7 323 Pfam PF01734 Patatin-like phospholipase 8 201 5.3E-24 T 25-04-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Gene3D G3DSA:3.30.310.50 373 453 5.2E-18 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 5.7E-30 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 208 221 5.7E-30 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 237 252 5.7E-30 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 169 188 5.7E-30 T 25-04-2017 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 262 372 7.0E-26 T 25-04-2017 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 4.3E-32 T 25-04-2017 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 SUPERFAMILY SSF53738 152 260 3.57E-28 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Gene3D G3DSA:3.40.120.10 6 145 1.1E-34 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 SUPERFAMILY SSF53738 3 175 7.85E-40 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Gene3D G3DSA:3.40.120.10 254 367 2.4E-40 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Gene3D G3DSA:3.40.120.10 171 253 7.9E-29 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 153 257 4.0E-24 T 25-04-2017 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 25-04-2017 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 SUPERFAMILY SSF53738 262 367 2.71E-32 T 25-04-2017 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 SUPERFAMILY SSF55957 372 455 2.09E-19 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS07760 236d0086fa3e1527f23ed0aeca9a8259 457 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 377 452 5.8E-9 T 25-04-2017 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 Pfam PF10369 Small subunit of acetolactate synthase 84 158 9.4E-24 T 25-04-2017 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 SUPERFAMILY SSF55021 2 74 2.75E-22 T 25-04-2017 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 SUPERFAMILY SSF55021 79 162 8.86E-26 T 25-04-2017 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 Pfam PF01842 ACT domain 4 68 3.0E-15 T 25-04-2017 IPR002912 ACT domain GO:0008152|GO:0016597 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 5.0E-67 T 25-04-2017 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 Gene3D G3DSA:3.30.70.260 1 76 7.3E-36 T 25-04-2017 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 8.0E-37 T 25-04-2017 A4U88_RS03300 813db6e49ea6903301ee8dac518324e5 163 Gene3D G3DSA:3.30.70.1150 83 162 5.3E-27 T 25-04-2017 A4U88_RS22075 2745c051e04c70013831a500b4a552a7 445 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 443 3.2E-147 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS22075 2745c051e04c70013831a500b4a552a7 445 PIRSF PIRSF002746 1 445 6.1E-142 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS22075 2745c051e04c70013831a500b4a552a7 445 Pfam PF02447 GntP family permease 5 440 8.0E-144 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 SUPERFAMILY SSF53686 4 289 1.57E-92 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 281 2.2E-67 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 TIGRFAM TIGR01136 cysKM: cysteine synthase 5 292 1.1E-123 T 25-04-2017 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 Gene3D G3DSA:3.40.50.1100 40 140 1.7E-37 T 25-04-2017 A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 30 48 - T 25-04-2017 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 Gene3D G3DSA:3.40.50.1100 146 292 5.1E-82 T 25-04-2017 A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 Gene3D G3DSA:3.40.50.1100 2 39 5.1E-82 T 25-04-2017 A4U88_RS17635 1cf7db9fe090cc20f0cf433fb4d2dbeb 293 TIGRFAM TIGR01138 cysM: cysteine synthase B 3 292 2.1E-154 T 25-04-2017 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 A4U88_RS00215 ef9c5292af09708a0e9d177284208768 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 23 306 1.4E-115 T 25-04-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 A4U88_RS00215 ef9c5292af09708a0e9d177284208768 309 Gene3D G3DSA:3.90.1670.10 27 308 8.4E-105 T 25-04-2017 IPR024064 FdhE-like A4U88_RS00215 ef9c5292af09708a0e9d177284208768 309 SUPERFAMILY SSF144020 26 307 7.59E-97 T 25-04-2017 IPR024064 FdhE-like A4U88_RS00215 ef9c5292af09708a0e9d177284208768 309 PIRSF PIRSF018296 1 309 6.4E-135 T 25-04-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 A4U88_RS00215 ef9c5292af09708a0e9d177284208768 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 307 2.3E-125 T 25-04-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 A4U88_RS00215 ef9c5292af09708a0e9d177284208768 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 308 49.73 T 25-04-2017 IPR006452 Formate dehydrogenase accessory protein GO:0005737 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 SUPERFAMILY SSF58104 238 519 5.23E-69 T 25-04-2017 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 Gene3D G3DSA:1.10.287.950 289 490 2.3E-58 T 25-04-2017 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 Pfam PF02203 Tar ligand binding domain homologue 1 155 3.3E-17 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 517 5.1E-57 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 SMART SM00304 218 270 4.9E-10 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 Gene3D G3DSA:1.20.120.30 38 142 4.5E-8 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 SUPERFAMILY SSF47170 25 155 3.79E-10 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 SMART SM00283 271 518 7.8E-84 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.9E-62 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 369 396 1.9E-62 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.9E-62 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 446 475 1.9E-62 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 292 321 1.9E-62 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 1.9E-62 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01530 0e235766986c744ac417279c1d439900 535 Pfam PF00672 HAMP domain 201 266 6.6E-11 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS21720 b827484f410c8e78bde94533024251fc 301 Gene3D G3DSA:2.60.120.330 124 225 2.9E-16 T 25-04-2017 IPR027443 Isopenicillin N synthase-like A4U88_RS21720 b827484f410c8e78bde94533024251fc 301 SUPERFAMILY SSF51197 98 238 3.84E-19 T 25-04-2017 A4U88_RS21720 b827484f410c8e78bde94533024251fc 301 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 71 222 2.5E-49 T 25-04-2017 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 A4U88_RS21260 864b2a21001494f395baf86327be5970 217 Gene3D G3DSA:3.40.50.880 1 216 4.5E-96 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS21260 864b2a21001494f395baf86327be5970 217 PIRSF PIRSF006320 1 216 2.5E-99 T 25-04-2017 IPR026041 Glyoxalase ElbB A4U88_RS21260 864b2a21001494f395baf86327be5970 217 SUPERFAMILY SSF52317 1 216 1.2E-59 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS00330 2c52f9e9f933dcb61b37d289c8fa2a78 147 SUPERFAMILY SSF52402 1 146 1.59E-19 T 25-04-2017 A4U88_RS00330 2c52f9e9f933dcb61b37d289c8fa2a78 147 Pfam PF00582 Universal stress protein family 1 146 1.0E-16 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS00330 2c52f9e9f933dcb61b37d289c8fa2a78 147 Gene3D G3DSA:3.40.50.620 1 146 4.5E-20 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS06920 088841e4fc9526b23fd2685d81050821 226 Gene3D G3DSA:3.40.50.720 1 204 1.2E-26 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06920 088841e4fc9526b23fd2685d81050821 226 SUPERFAMILY SSF51735 1 206 5.34E-31 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 Pfam PF13378 Enolase C-terminal domain-like 131 277 8.3E-15 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 11 311 1.8E-112 T 25-04-2017 A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 Gene3D G3DSA:3.20.20.120 132 303 2.0E-35 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 SUPERFAMILY SSF51604 112 311 7.47E-50 T 25-04-2017 IPR029065 Enolase C-terminal domain-like A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 Gene3D G3DSA:3.30.390.10 6 131 2.0E-42 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 SUPERFAMILY SSF54826 6 103 3.94E-27 T 25-04-2017 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 SMART SM00922 119 214 1.1E-8 T 25-04-2017 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal A4U88_RS16740 2e99798a40252fb3b23276c35d15ee1a 327 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 8 322 24.924 T 25-04-2017 IPR010196 o-succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 6.0E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 6.0E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 6.0E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.0E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 6.0E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 6.0E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 Gene3D G3DSA:3.40.50.720 6 249 2.4E-80 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 5.9E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.9E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 5.9E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21790 347d9963a05521c92307789983194349 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 248 7.3E-62 T 25-04-2017 A4U88_RS21790 347d9963a05521c92307789983194349 249 SUPERFAMILY SSF51735 8 248 1.71E-77 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16810 94304f2a881a5e692cff04dac21db22d 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 1.8E-83 T 25-04-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16810 94304f2a881a5e692cff04dac21db22d 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.59 T 25-04-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 A4U88_RS16810 94304f2a881a5e692cff04dac21db22d 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 6.8E-135 T 25-04-2017 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 A4U88_RS09730 3ccb120df3e2afae3c543d8b9c9d0c62 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 1.6E-118 T 25-04-2017 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS09730 3ccb120df3e2afae3c543d8b9c9d0c62 284 Gene3D G3DSA:3.20.20.70 18 281 3.3E-107 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS09730 3ccb120df3e2afae3c543d8b9c9d0c62 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.374 T 25-04-2017 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS09730 3ccb120df3e2afae3c543d8b9c9d0c62 284 SUPERFAMILY SSF51569 3 278 5.04E-103 T 25-04-2017 A4U88_RS09730 3ccb120df3e2afae3c543d8b9c9d0c62 284 Pfam PF00793 DAHP synthetase I family 10 275 2.5E-67 T 25-04-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS18245 d03ce5241e00084e7f1f2a7156c0176b 141 SUPERFAMILY SSF55729 1 127 3.43E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18245 d03ce5241e00084e7f1f2a7156c0176b 141 Gene3D G3DSA:3.40.630.30 1 136 7.8E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18245 d03ce5241e00084e7f1f2a7156c0176b 141 Pfam PF13508 Acetyltransferase (GNAT) domain 46 121 1.1E-12 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS15805 4c505b562caf32854f41ef455d229095 215 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 21 212 6.3E-55 T 25-04-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like A4U88_RS15805 4c505b562caf32854f41ef455d229095 215 SUPERFAMILY SSF51197 18 214 3.85E-60 T 25-04-2017 A4U88_RS15805 4c505b562caf32854f41ef455d229095 215 Gene3D G3DSA:2.60.120.590 17 214 1.0E-54 T 25-04-2017 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like A4U88_RS06550 3117cc3fee9ccba79d2def5b516e80d3 238 SUPERFAMILY SSF52540 2 208 9.82E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06550 3117cc3fee9ccba79d2def5b516e80d3 238 ProSitePatterns PS00211 ABC transporters family signature. 120 134 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06550 3117cc3fee9ccba79d2def5b516e80d3 238 Gene3D G3DSA:3.40.50.300 2 207 8.8E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06550 3117cc3fee9ccba79d2def5b516e80d3 238 Pfam PF00005 ABC transporter 3 148 1.5E-31 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06550 3117cc3fee9ccba79d2def5b516e80d3 238 SMART SM00382 12 192 3.4E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 Pfam PF00731 AIR carboxylase 14 162 4.1E-63 T 25-04-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 169 7.4E-65 T 25-04-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 SUPERFAMILY SSF52255 14 172 2.09E-65 T 25-04-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 SMART SM01001 13 164 8.6E-101 T 25-04-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 31.997 T 25-04-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 PIRSF PIRSF001338 10 173 1.8E-65 T 25-04-2017 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 A4U88_RS05425 71dc7304a76411992db4b93b9dd101ae 174 Gene3D G3DSA:3.40.50.7700 8 170 8.0E-74 T 25-04-2017 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 A4U88_RS00585 356419928a80bba23c8a0f36fd294f55 416 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 8.8E-11 T 25-04-2017 IPR002797 Polysaccharide biosynthesis protein GO:0016020 A4U88_RS00585 356419928a80bba23c8a0f36fd294f55 416 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 41.249 T 25-04-2017 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 A4U88_RS09845 a8dca8d26331aa7aceaeab156f00f251 287 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 227 6.3E-18 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS09845 a8dca8d26331aa7aceaeab156f00f251 287 SUPERFAMILY SSF111369 43 221 7.72E-21 T 25-04-2017 A4U88_RS09845 a8dca8d26331aa7aceaeab156f00f251 287 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 229 2.4E-35 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS09845 a8dca8d26331aa7aceaeab156f00f251 287 Pfam PF00529 HlyD membrane-fusion protein of T1SS 186 284 1.1E-8 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS09845 a8dca8d26331aa7aceaeab156f00f251 287 Gene3D G3DSA:2.40.50.100 150 183 6.1E-17 T 25-04-2017 A4U88_RS09845 a8dca8d26331aa7aceaeab156f00f251 287 Gene3D G3DSA:2.40.50.100 45 76 6.1E-17 T 25-04-2017 A4U88_RS18120 e9adb0c30c0e74bb586b6879bfdbc6fa 87 SUPERFAMILY SSF89447 5 56 1.15E-7 T 25-04-2017 A4U88_RS18120 e9adb0c30c0e74bb586b6879bfdbc6fa 87 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 8 45 3.7E-6 T 25-04-2017 IPR007159 SpoVT-AbrB domain GO:0003677 A4U88_RS23355 ca3d455f26fd4ac935ab7596b5eae68e 85 SUPERFAMILY SSF55021 3 75 4.51E-11 T 25-04-2017 A4U88_RS23355 ca3d455f26fd4ac935ab7596b5eae68e 85 Gene3D G3DSA:3.30.70.260 1 74 1.3E-11 T 25-04-2017 A4U88_RS23355 ca3d455f26fd4ac935ab7596b5eae68e 85 Pfam PF13710 ACT domain 13 73 2.6E-25 T 25-04-2017 A4U88_RS15010 fc16fbb76eaefba26a25d8607030d874 89 Pfam PF12961 Domain of Unknown Function with PDB structure (DUF3850) 4 82 1.6E-23 T 25-04-2017 A4U88_RS15010 fc16fbb76eaefba26a25d8607030d874 89 SUPERFAMILY SSF88697 1 76 8.57E-12 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS15010 fc16fbb76eaefba26a25d8607030d874 89 Gene3D G3DSA:3.10.480.10 1 68 7.6E-8 T 25-04-2017 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 4.8E-40 T 25-04-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Gene3D G3DSA:3.30.70.1050 1 118 2.2E-41 T 25-04-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 SUPERFAMILY SSF109998 248 429 9.68E-47 T 25-04-2017 IPR027304 Trigger factor/SurA domain A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Gene3D G3DSA:3.10.50.40 152 215 4.8E-11 T 25-04-2017 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 SUPERFAMILY SSF54534 96 241 3.93E-39 T 25-04-2017 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 PIRSF PIRSF003095 1 434 9.6E-134 T 25-04-2017 IPR005215 Trigger factor GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 SUPERFAMILY SSF102735 1 131 6.54E-42 T 25-04-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 4.9E-45 T 25-04-2017 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 229 1.0E-14 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 1.5E-145 T 25-04-2017 IPR005215 Trigger factor GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Hamap MF_00303 Trigger factor [tig]. 1 418 22.441 T 25-04-2017 IPR005215 Trigger factor GO:0015031 A4U88_RS04945 9ec6f5411ae7fc0aba7f268d6dc27c5f 434 Gene3D G3DSA:1.10.3120.10 216 388 1.1E-60 T 25-04-2017 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 A4U88_RS03830 425d8ef1bf03139aa3ba301b758f37b8 82 SUPERFAMILY SSF54565 1 76 1.16E-28 T 25-04-2017 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03830 425d8ef1bf03139aa3ba301b758f37b8 82 Gene3D G3DSA:3.30.1320.10 1 79 1.1E-32 T 25-04-2017 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03830 425d8ef1bf03139aa3ba301b758f37b8 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 6.8E-29 T 25-04-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03830 425d8ef1bf03139aa3ba301b758f37b8 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 25-04-2017 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS03830 425d8ef1bf03139aa3ba301b758f37b8 82 Pfam PF00886 Ribosomal protein S16 8 68 6.3E-24 T 25-04-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS03830 425d8ef1bf03139aa3ba301b758f37b8 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.845 T 25-04-2017 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS02220 1cee07043cb3bbf55fb50c5d15822d17 478 SUPERFAMILY SSF56059 321 466 1.94E-64 T 25-04-2017 A4U88_RS02220 1cee07043cb3bbf55fb50c5d15822d17 478 SUPERFAMILY SSF56059 21 216 1.94E-64 T 25-04-2017 A4U88_RS02220 1cee07043cb3bbf55fb50c5d15822d17 478 Pfam PF14403 Circularly permuted ATP-grasp type 2 78 451 2.0E-163 T 25-04-2017 IPR025841 Circularly permuted ATP-grasp type 2 A4U88_RS02220 1cee07043cb3bbf55fb50c5d15822d17 478 PIRSF PIRSF005522 1 477 4.3E-234 T 25-04-2017 IPR016450 Uncharacterised conserved protein UCP005522 A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 SUPERFAMILY SSF90123 9 325 9.29E-73 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 SMART SM00382 361 547 1.1E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 SUPERFAMILY SSF52540 326 572 5.44E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 Gene3D G3DSA:3.40.50.300 335 565 2.3E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 Pfam PF00664 ABC transporter transmembrane region 21 291 9.9E-39 T 25-04-2017 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 Gene3D G3DSA:1.20.1560.10 9 319 2.8E-72 T 25-04-2017 A4U88_RS05010 e3bbd39be06d1abd71d472487b03e945 591 Pfam PF00005 ABC transporter 352 500 1.1E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 PIRSF PIRSF000477 2 273 4.7E-106 T 25-04-2017 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217|Reactome: R-HSA-74259 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 SUPERFAMILY SSF53167 4 273 2.23E-85 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 Pfam PF01048 Phosphorylase superfamily 25 270 7.8E-46 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 ProSitePatterns PS01240 Purine and other phosphorylases family 2 signature. 77 118 - T 25-04-2017 IPR018099 Purine phosphorylase, family 2, conserved site GO:0016763 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 25 269 4.0E-101 T 25-04-2017 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217|Reactome: R-HSA-74259 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 Gene3D G3DSA:3.40.50.1580 4 271 1.4E-94 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS20845 2017f8ea1d14845285072aebba6ff754 273 TIGRFAM TIGR01699 XAPA: xanthosine phosphorylase 25 270 7.5E-123 T 25-04-2017 IPR010943 Xanthosine phosphorylase GO:0004731|GO:0005737|GO:0055086 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 A4U88_RS00650 30b12caa1ba468214c20e952f583cb5f 850 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 25-04-2017 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 A4U88_RS00650 30b12caa1ba468214c20e952f583cb5f 850 Pfam PF12633 Adenylate cyclase NT domain 5 200 8.2E-82 T 25-04-2017 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 A4U88_RS00650 30b12caa1ba468214c20e952f583cb5f 850 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 25-04-2017 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 A4U88_RS00650 30b12caa1ba468214c20e952f583cb5f 850 Pfam PF01295 Adenylate cyclase, class-I 228 825 4.6E-261 T 25-04-2017 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 A4U88_RS00650 30b12caa1ba468214c20e952f583cb5f 850 PIRSF PIRSF001444 1 850 0.0 T 25-04-2017 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 SUPERFAMILY SSF69065 5 159 1.71E-49 T 25-04-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 SUPERFAMILY SSF54768 109 223 6.76E-27 T 25-04-2017 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.49 T 25-04-2017 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 Gene3D G3DSA:3.30.160.20 153 223 3.9E-28 T 25-04-2017 IPR014720 Double-stranded RNA-binding domain A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 SMART SM00535 21 149 5.4E-58 T 25-04-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 25-04-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 1.0E-73 T 25-04-2017 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 Gene3D G3DSA:1.10.1520.10 6 148 2.0E-47 T 25-04-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 Pfam PF14622 Ribonuclease-III-like 20 140 1.7E-33 T 25-04-2017 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 SMART SM00358 156 224 2.0E-23 T 25-04-2017 IPR014720 Double-stranded RNA-binding domain A4U88_RS18635 90b6b3008f4849a15d89ba176ba864a4 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 3.1E-14 T 25-04-2017 IPR014720 Double-stranded RNA-binding domain A4U88_RS07105 d78b6c73c8c6d57a54e83a0b5e606e54 296 SUPERFAMILY SSF51621 4 290 4.93E-99 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS07105 d78b6c73c8c6d57a54e83a0b5e606e54 296 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 253 5.0E-50 T 25-04-2017 A4U88_RS07105 d78b6c73c8c6d57a54e83a0b5e606e54 296 ProSitePatterns PS00161 Isocitrate lyase signature. 121 126 - T 25-04-2017 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 A4U88_RS07105 d78b6c73c8c6d57a54e83a0b5e606e54 296 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 4 292 50.51 T 25-04-2017 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 A4U88_RS07105 d78b6c73c8c6d57a54e83a0b5e606e54 296 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 7 291 3.2E-132 T 25-04-2017 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 A4U88_RS07105 d78b6c73c8c6d57a54e83a0b5e606e54 296 Gene3D G3DSA:3.20.20.60 8 284 3.3E-100 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 Pfam PF02540 NAD synthase 264 512 3.2E-71 T 25-04-2017 IPR022310 NAD/GMP synthase A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 SUPERFAMILY SSF56317 4 242 1.96E-62 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 237 5.1E-26 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 Gene3D G3DSA:3.40.50.620 259 518 2.7E-75 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 511 1.1E-58 T 25-04-2017 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 SUPERFAMILY SSF52402 259 520 6.98E-78 T 25-04-2017 A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 Gene3D G3DSA:3.60.110.10 4 242 2.8E-62 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS18550 530b9048cfe68546014013ae7ec00008 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 25-04-2017 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 A4U88_RS01430 bbba0eb8edb813e558f0f24bade71e66 843 Pfam PF13953 PapC C-terminal domain 760 817 1.9E-15 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS01430 bbba0eb8edb813e558f0f24bade71e66 843 Pfam PF13954 PapC N-terminal domain 37 182 1.3E-41 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS01430 bbba0eb8edb813e558f0f24bade71e66 843 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 316 326 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS01430 bbba0eb8edb813e558f0f24bade71e66 843 SUPERFAMILY SSF141729 36 156 6.02E-33 T 25-04-2017 A4U88_RS01430 bbba0eb8edb813e558f0f24bade71e66 843 Pfam PF00577 Outer membrane usher protein 199 749 9.4E-189 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS18760 5aa4fe81bfd1c29d1123b4541349e78b 378 Gene3D G3DSA:2.40.50.100 65 96 9.9E-10 T 25-04-2017 A4U88_RS18760 5aa4fe81bfd1c29d1123b4541349e78b 378 Gene3D G3DSA:2.40.50.100 219 240 9.9E-10 T 25-04-2017 A4U88_RS18760 5aa4fe81bfd1c29d1123b4541349e78b 378 Pfam PF13533 Biotin-lipoyl like 64 111 1.3E-7 T 25-04-2017 A4U88_RS18760 5aa4fe81bfd1c29d1123b4541349e78b 378 SUPERFAMILY SSF111369 189 267 4.05E-5 T 25-04-2017 A4U88_RS18760 5aa4fe81bfd1c29d1123b4541349e78b 378 SUPERFAMILY SSF111369 64 122 7.45E-9 T 25-04-2017 A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 Pfam PF00437 Type II/IV secretion system protein 108 368 3.7E-78 T 25-04-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 296 310 - T 25-04-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 SUPERFAMILY SSF160246 11 69 1.31E-5 T 25-04-2017 A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 SMART SM00382 229 350 0.0089 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 SUPERFAMILY SSF52540 90 470 1.83E-87 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 Gene3D G3DSA:3.30.450.90 79 199 1.8E-46 T 25-04-2017 A4U88_RS03445 86dfde56ca59cc5055cb94f0f40f0ad1 480 Gene3D G3DSA:3.40.50.300 208 471 1.6E-89 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02995 e33115de897809f4ca8e61b0b6217850 228 SUPERFAMILY SSF75217 2 156 1.77E-31 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS02995 e33115de897809f4ca8e61b0b6217850 228 PIRSF PIRSF004808 1 228 1.3E-61 T 25-04-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS02995 e33115de897809f4ca8e61b0b6217850 228 Pfam PF00588 SpoU rRNA Methylase family 3 153 5.9E-34 T 25-04-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 A4U88_RS02995 e33115de897809f4ca8e61b0b6217850 228 Gene3D G3DSA:3.40.1280.10 2 159 9.2E-30 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS02995 e33115de897809f4ca8e61b0b6217850 228 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 2 225 1.3E-68 T 25-04-2017 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 SUPERFAMILY SSF81464 19 116 4.91E-24 T 25-04-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 SUPERFAMILY SSF49503 122 281 2.07E-51 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 PIRSF PIRSF000292 1 312 6.2E-133 T 25-04-2017 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 239 2.4E-115 T 25-04-2017 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 Gene3D G3DSA:1.10.287.90 27 113 4.2E-36 T 25-04-2017 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 Pfam PF06481 COX Aromatic Rich Motif 239 285 5.5E-20 T 25-04-2017 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 149 219 4.5E-5 T 25-04-2017 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 A4U88_RS04925 c21e76150e177fcdbdea080efd500d1e 316 Gene3D G3DSA:2.60.40.420 121 280 5.7E-41 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 54.19 T 25-04-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 SUPERFAMILY SSF51556 8 346 5.45E-148 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 7.2E-147 T 25-04-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 Gene3D G3DSA:3.20.20.140 7 346 7.9E-133 T 25-04-2017 A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 PIRSF PIRSF001237 4 348 1.8E-143 T 25-04-2017 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 25-04-2017 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686 A4U88_RS09155 769c3647427bb4314f39bad08dfa6d1d 348 Pfam PF01979 Amidohydrolase family 15 307 8.0E-21 T 25-04-2017 IPR006680 Amidohydrolase-related GO:0016787 A4U88_RS19630 62a305b27217c49c4840c45da1521cc7 849 Pfam PF13953 PapC C-terminal domain 767 833 2.0E-24 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS19630 62a305b27217c49c4840c45da1521cc7 849 Pfam PF00577 Outer membrane usher protein 203 758 4.1E-196 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS19630 62a305b27217c49c4840c45da1521cc7 849 Pfam PF13954 PapC N-terminal domain 38 186 3.0E-44 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS19630 62a305b27217c49c4840c45da1521cc7 849 SUPERFAMILY SSF141729 64 177 2.49E-30 T 25-04-2017 A4U88_RS19630 62a305b27217c49c4840c45da1521cc7 849 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 315 325 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS18115 fc1947af9155cf9e3d29cd15839e7db5 129 SUPERFAMILY SSF88723 1 128 3.36E-34 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS18115 fc1947af9155cf9e3d29cd15839e7db5 129 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 126 10.808 T 25-04-2017 IPR022907 VapC family GO:0004540 A4U88_RS18115 fc1947af9155cf9e3d29cd15839e7db5 129 Pfam PF01850 PIN domain 2 119 8.3E-14 T 25-04-2017 IPR002716 PIN domain A4U88_RS18115 fc1947af9155cf9e3d29cd15839e7db5 129 Gene3D G3DSA:3.40.50.1010 1 128 4.5E-31 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS12740 143f5e61be7ea83f7a2f2d262d272988 308 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 12 302 31.308 T 25-04-2017 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442 A4U88_RS12740 143f5e61be7ea83f7a2f2d262d272988 308 Pfam PF02649 Type I GTP cyclohydrolase folE2 12 297 4.9E-66 T 25-04-2017 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442 A4U88_RS12740 143f5e61be7ea83f7a2f2d262d272988 308 Gene3D G3DSA:3.10.270.10 11 166 1.2E-70 T 25-04-2017 A4U88_RS12740 143f5e61be7ea83f7a2f2d262d272988 308 Gene3D G3DSA:3.10.270.10 200 301 1.2E-70 T 25-04-2017 A4U88_RS20840 d1598546015676a1d7c08ea325f4c769 416 SUPERFAMILY SSF103473 9 407 2.18E-33 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS20840 d1598546015676a1d7c08ea325f4c769 416 TIGRFAM TIGR00889 2A0110: nucleoside transporter 1 409 3.3E-182 T 25-04-2017 IPR004740 Nucleoside:H+ symporter GO:0005337|GO:0015858|GO:0016021 A4U88_RS20840 d1598546015676a1d7c08ea325f4c769 416 Gene3D G3DSA:1.20.1250.20 206 410 2.5E-22 T 25-04-2017 A4U88_RS20840 d1598546015676a1d7c08ea325f4c769 416 Gene3D G3DSA:1.20.1250.20 8 182 3.7E-13 T 25-04-2017 A4U88_RS20840 d1598546015676a1d7c08ea325f4c769 416 Pfam PF03825 Nucleoside H+ symporter 1 406 9.6E-160 T 25-04-2017 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 Pfam PF08442 ATP-grasp domain 2 203 2.1E-83 T 25-04-2017 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 25-04-2017 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 Gene3D G3DSA:3.40.50.261 241 383 1.2E-64 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 1.1E-181 T 25-04-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 Pfam PF00549 CoA-ligase 262 382 3.6E-24 T 25-04-2017 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 PIRSF PIRSF001554 1 388 3.3E-156 T 25-04-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 SUPERFAMILY SSF52210 239 385 7.2E-53 T 25-04-2017 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 SUPERFAMILY SSF56059 1 238 6.01E-82 T 25-04-2017 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 Gene3D G3DSA:3.30.470.20 96 239 1.9E-57 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 Gene3D G3DSA:3.30.1490.20 22 95 9.7E-35 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS05980 9c282a043c19f2d37cde4df80a377d0b 388 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.0 T 25-04-2017 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 Gene3D G3DSA:2.40.230.10 37 291 1.6E-101 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 206 224 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 281 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 239 256 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 1.1E-82 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 Pfam PF02253 Phospholipase A1 44 288 3.1E-94 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS00715 09f62795944fdfc63a3488c34385ddf2 292 SUPERFAMILY SSF56931 40 291 6.93E-91 T 25-04-2017 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417 A4U88_RS06160 c45e97c7f29934e435ce60575401e2aa 190 Pfam PF00857 Isochorismatase family 4 184 4.1E-35 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS06160 c45e97c7f29934e435ce60575401e2aa 190 Gene3D G3DSA:3.40.50.850 2 189 1.1E-44 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS06160 c45e97c7f29934e435ce60575401e2aa 190 SUPERFAMILY SSF52499 2 187 1.11E-42 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS17960 4f7cc98d3cd10961ef408836589d6b45 117 Pfam PF03960 ArsC family 7 116 2.7E-22 T 25-04-2017 IPR006660 Arsenate reductase-like A4U88_RS17960 4f7cc98d3cd10961ef408836589d6b45 117 Gene3D G3DSA:3.40.30.10 1 117 6.9E-52 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17960 4f7cc98d3cd10961ef408836589d6b45 117 SUPERFAMILY SSF52833 3 117 2.54E-37 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17960 4f7cc98d3cd10961ef408836589d6b45 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 117 4.3E-49 T 25-04-2017 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 A4U88_RS02165 6c4b38f0e5d7af977b5b6a14a283cae5 712 ProSitePatterns PS00850 Glycine radical domain signature. 676 684 - T 25-04-2017 IPR019777 Formate C-acetyltransferase glycine radical, conserved site A4U88_RS02165 6c4b38f0e5d7af977b5b6a14a283cae5 712 Pfam PF03477 ATP cone domain 4 89 3.1E-20 T 25-04-2017 IPR005144 ATP-cone domain Reactome: R-HSA-499943 A4U88_RS02165 6c4b38f0e5d7af977b5b6a14a283cae5 712 Gene3D G3DSA:3.20.70.20 124 685 4.6E-184 T 25-04-2017 A4U88_RS02165 6c4b38f0e5d7af977b5b6a14a283cae5 712 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 115 705 9.0E-203 T 25-04-2017 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 A4U88_RS02165 6c4b38f0e5d7af977b5b6a14a283cae5 712 SUPERFAMILY SSF51998 121 687 6.71E-194 T 25-04-2017 A4U88_RS02165 6c4b38f0e5d7af977b5b6a14a283cae5 712 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 116 705 3.6E-181 T 25-04-2017 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.17.4.2|KEGG: 00240+1.17.4.2|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 SUPERFAMILY SSF52540 19 257 1.36E-89 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 Pfam PF08402 TOBE domain 295 375 6.0E-19 T 25-04-2017 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 SUPERFAMILY SSF50331 253 375 3.4E-15 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 Pfam PF00005 ABC transporter 36 177 1.5E-39 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 Gene3D G3DSA:3.40.50.300 11 254 1.6E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 50 375 7.5E-148 T 25-04-2017 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS08065 4172b96fd434dc3ddd5a9a439a1c907c 377 SMART SM00382 44 227 6.8E-20 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 SUPERFAMILY SSF51905 6 180 6.31E-45 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 SUPERFAMILY SSF51905 307 393 6.31E-45 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 Gene3D G3DSA:3.50.50.60 5 66 2.5E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 Gene3D G3DSA:3.50.50.60 109 185 2.5E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 Gene3D G3DSA:3.50.50.60 308 384 2.5E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 335 351 5.7E-22 T 25-04-2017 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 5.7E-22 T 25-04-2017 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 5.7E-22 T 25-04-2017 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 5.7E-22 T 25-04-2017 A4U88_RS16710 b37187e9693f560b5058c72f01b30c61 410 Pfam PF01494 FAD binding domain 283 381 1.2E-11 T 25-04-2017 IPR002938 FAD-binding domain GO:0071949 A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 SMART SM00248 141 172 100.0 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 SMART SM00248 36 67 700.0 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 SMART SM00248 256 285 150.0 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 SMART SM00248 208 247 4400.0 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 SMART SM00248 99 136 21.0 T 25-04-2017 IPR002110 Ankyrin repeat GO:0005515 A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 Gene3D G3DSA:1.25.40.20 40 285 4.1E-27 T 25-04-2017 IPR020683 Ankyrin repeat-containing domain A4U88_RS12020 5ced7671abab607684658e15d4c1045b 329 SUPERFAMILY SSF48403 50 285 1.66E-22 T 25-04-2017 IPR020683 Ankyrin repeat-containing domain A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 SMART SM00342 175 257 7.1E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 Gene3D G3DSA:1.10.10.60 157 211 9.3E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 SUPERFAMILY SSF46689 214 258 1.43E-6 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 Pfam PF02311 AraC-like ligand binding domain 29 87 1.8E-6 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 SUPERFAMILY SSF51182 18 186 9.34E-15 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 Pfam PF12833 Helix-turn-helix domain 181 258 2.1E-21 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 Gene3D G3DSA:2.60.120.10 26 91 2.4E-10 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS02515 f2e352c0e375fb6e28bab3e555beaa60 273 Gene3D G3DSA:1.10.10.60 215 256 3.7E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS01760 5c07b454c66edb64b46ba29b5940c166 117 Pfam PF04343 Protein of unknown function, DUF488 6 113 1.4E-25 T 25-04-2017 IPR007438 Protein of unknown function DUF488 A4U88_RS23265 911912cf66c55ac12e87d4b9e7a43a0f 163 Pfam PF07813 LTXXQ motif family protein 49 140 1.2E-19 T 25-04-2017 IPR012899 LTXXQ motif family protein GO:0042597 A4U88_RS23265 911912cf66c55ac12e87d4b9e7a43a0f 163 PIRSF PIRSF034445 1 151 6.0E-29 T 25-04-2017 IPR012899 LTXXQ motif family protein GO:0042597 A4U88_RS04035 2041750739cbb757d751a8d511c33da1 221 SUPERFAMILY SSF161098 15 202 5.23E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04035 2041750739cbb757d751a8d511c33da1 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 111 5.9E-24 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS04035 2041750739cbb757d751a8d511c33da1 221 Gene3D G3DSA:1.10.3720.10 13 214 1.6E-42 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04035 2041750739cbb757d751a8d511c33da1 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 210 1.2E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 Pfam PF01274 Malate synthase 12 531 2.6E-207 T 25-04-2017 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 23 531 1.5E-252 T 25-04-2017 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 Gene3D G3DSA:3.20.20.360 72 412 8.2E-123 T 25-04-2017 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 Gene3D G3DSA:1.20.1220.12 413 525 4.5E-38 T 25-04-2017 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 PIRSF PIRSF001363 1 532 8.6E-249 T 25-04-2017 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 SUPERFAMILY SSF51645 10 531 1.06E-188 T 25-04-2017 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS22100 cb3c1d1b5b18dd3c1b268197cdbfac87 532 ProSitePatterns PS00510 Malate synthase signature. 265 280 - T 25-04-2017 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 A4U88_RS18180 0896b88c9ef639c071b08348e21818f9 326 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 4 326 1.1E-179 T 25-04-2017 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 A4U88_RS18180 0896b88c9ef639c071b08348e21818f9 326 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 5 178 6.3E-70 T 25-04-2017 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 A4U88_RS18180 0896b88c9ef639c071b08348e21818f9 326 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 233 325 1.2E-41 T 25-04-2017 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 A4U88_RS15315 d3f9781807bac9e79a5a677a55896631 312 Pfam PF07848 PaaX-like protein 20 88 5.0E-27 T 25-04-2017 IPR012906 PaaX-like, N-terminal A4U88_RS15315 d3f9781807bac9e79a5a677a55896631 312 PIRSF PIRSF020623 1 307 2.2E-111 T 25-04-2017 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 A4U88_RS15315 d3f9781807bac9e79a5a677a55896631 312 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 22 304 3.3E-100 T 25-04-2017 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 A4U88_RS15315 d3f9781807bac9e79a5a677a55896631 312 Pfam PF08223 PaaX-like protein C-terminal domain 105 275 7.6E-54 T 25-04-2017 IPR013225 PaaX-like, C-terminal A4U88_RS15315 d3f9781807bac9e79a5a677a55896631 312 SUPERFAMILY SSF46785 46 102 9.3E-5 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15315 d3f9781807bac9e79a5a677a55896631 312 Gene3D G3DSA:1.10.10.10 45 97 9.7E-4 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11930 a678528b3fa0254bad2a791a9774555c 125 Gene3D G3DSA:3.10.180.10 1 121 9.1E-30 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11930 a678528b3fa0254bad2a791a9774555c 125 SUPERFAMILY SSF54593 2 123 3.52E-21 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11930 a678528b3fa0254bad2a791a9774555c 125 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 117 1.2E-5 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS00825 e9fd3742a6f16c449ecec9c91198b1fc 206 SUPERFAMILY SSF53335 20 197 4.84E-53 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS00825 e9fd3742a6f16c449ecec9c91198b1fc 206 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 132 138 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS00825 e9fd3742a6f16c449ecec9c91198b1fc 206 Gene3D G3DSA:3.40.50.150 14 201 5.1E-67 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS00825 e9fd3742a6f16c449ecec9c91198b1fc 206 Pfam PF03602 Conserved hypothetical protein 95 21 195 9.1E-60 T 25-04-2017 A4U88_RS00825 e9fd3742a6f16c449ecec9c91198b1fc 206 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 14 197 2.0E-63 T 25-04-2017 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS00825 e9fd3742a6f16c449ecec9c91198b1fc 206 PIRSF PIRSF004553 20 199 3.1E-57 T 25-04-2017 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS13720 0a808d09158cd7a0eeec9491e7376bf6 187 Pfam PF07273 Protein of unknown function (DUF1439) 29 179 2.7E-58 T 25-04-2017 IPR010835 Protein of unknown function DUF1439 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 3 348 4.8E-154 T 25-04-2017 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 Gene3D G3DSA:2.30.42.10 256 351 8.0E-24 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 Gene3D G3DSA:2.40.10.10 143 255 6.6E-39 T 25-04-2017 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 PRINTS PR00834 HtrA/DegQ protease family signature 107 127 5.8E-45 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 PRINTS PR00834 HtrA/DegQ protease family signature 147 171 5.8E-45 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 PRINTS PR00834 HtrA/DegQ protease family signature 86 98 5.8E-45 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 PRINTS PR00834 HtrA/DegQ protease family signature 204 221 5.8E-45 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 PRINTS PR00834 HtrA/DegQ protease family signature 293 305 5.8E-45 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 PRINTS PR00834 HtrA/DegQ protease family signature 182 199 5.8E-45 T 25-04-2017 IPR001940 Peptidase S1C GO:0004252|GO:0006508 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 SMART SM00228 253 335 1.6E-10 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 Pfam PF13365 Trypsin-like peptidase domain 77 211 3.1E-30 T 25-04-2017 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 SUPERFAMILY SSF50156 227 348 1.84E-19 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 Pfam PF13180 PDZ domain 276 344 1.5E-12 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 Gene3D G3DSA:2.40.10.10 40 141 4.2E-31 T 25-04-2017 A4U88_RS21335 12fc018eb47d0612d0ec5272f1a507d9 352 SUPERFAMILY SSF50494 45 250 1.14E-60 T 25-04-2017 IPR009003 Peptidase S1, PA clan A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 413 1.1E-107 T 25-04-2017 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 Gene3D G3DSA:3.90.190.20 288 415 1.5E-44 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 PIRSF PIRSF001563 6 419 2.5E-110 T 25-04-2017 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 25-04-2017 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 SUPERFAMILY SSF53244 286 413 1.28E-33 T 25-04-2017 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 Pfam PF08245 Mur ligase middle domain 54 197 1.5E-11 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 SUPERFAMILY SSF53623 13 284 1.49E-87 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS17015 395dc05553c0acc83852f34dc0d23953 421 Gene3D G3DSA:3.40.1190.10 11 287 1.8E-93 T 25-04-2017 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 A4U88_RS17255 451a3328c7fc8330d81082fbb074704b 164 Pfam PF03100 CcmE 4 137 1.7E-44 T 25-04-2017 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 A4U88_RS17255 451a3328c7fc8330d81082fbb074704b 164 Gene3D G3DSA:2.40.50.140 26 131 1.1E-40 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS17255 451a3328c7fc8330d81082fbb074704b 164 SUPERFAMILY SSF82093 30 143 3.27E-40 T 25-04-2017 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 A4U88_RS17255 451a3328c7fc8330d81082fbb074704b 164 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 147 32.226 T 25-04-2017 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 SUPERFAMILY SSF52467 41 267 1.37E-73 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Gene3D G3DSA:3.30.1600.10 55 94 2.2E-27 T 25-04-2017 IPR026591 Sirtuin family, catalytic core small domain A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Gene3D G3DSA:3.30.1600.10 147 191 2.2E-27 T 25-04-2017 IPR026591 Sirtuin family, catalytic core small domain A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 39 269 60.234 T 25-04-2017 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Gene3D G3DSA:3.40.50.1220 198 264 5.7E-41 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Gene3D G3DSA:3.40.50.1220 38 54 5.7E-41 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Gene3D G3DSA:3.40.50.1220 104 146 5.7E-41 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS09780 de2923fcb91bfc33252dad90d5e0be65 278 Pfam PF02146 Sir2 family 46 219 1.5E-49 T 25-04-2017 IPR003000 Sirtuin family GO:0070403 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 PIRSF PIRSF006334 14 294 1.8E-108 T 25-04-2017 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 25-04-2017 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 62 139 8.3E-12 T 25-04-2017 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 49.373 T 25-04-2017 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 SUPERFAMILY SSF53927 1 147 7.53E-40 T 25-04-2017 IPR016193 Cytidine deaminase-like GO:0003824 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 Gene3D G3DSA:3.40.140.10 189 289 5.7E-24 T 25-04-2017 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 278 1.2E-45 T 25-04-2017 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 Gene3D G3DSA:3.40.140.10 32 177 1.7E-42 T 25-04-2017 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 SUPERFAMILY SSF53927 153 289 3.12E-40 T 25-04-2017 IPR016193 Cytidine deaminase-like GO:0003824 A4U88_RS07595 aff2f639ec33b82ad2b3b9b43c931bd8 294 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 30 285 2.3E-86 T 25-04-2017 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 A4U88_RS02905 c6d2077b970f4ca690e3cc72fdd7d1bb 226 Pfam PF10144 Bacterial virulence factor haemolysin 1 159 6.3E-68 T 25-04-2017 IPR019305 Uncharacterised protein family Smp A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 SUPERFAMILY SSF63380 78 204 7.74E-26 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 230 4.6E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 4.6E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 300 308 4.6E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 236 245 4.6E-7 T 25-04-2017 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 7.9E-28 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 7.9E-28 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 7.9E-28 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 7.9E-28 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 7.9E-28 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 7.9E-28 T 25-04-2017 IPR001221 Phenol hydroxylase reductase GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 Gene3D G3DSA:2.40.30.10 105 200 4.9E-26 T 25-04-2017 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 Gene3D G3DSA:3.40.50.80 205 334 2.8E-33 T 25-04-2017 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 SUPERFAMILY SSF54292 3 95 1.7E-24 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 Pfam PF00175 Oxidoreductase NAD-binding domain 212 313 2.8E-20 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 SUPERFAMILY SSF52343 204 333 1.57E-32 T 25-04-2017 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 Gene3D G3DSA:3.10.20.30 2 97 6.2E-25 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 3.2E-14 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS14880 290b0349e90e1ca3515a12becc355fd8 341 Pfam PF00970 Oxidoreductase FAD-binding domain 109 202 1.2E-17 T 25-04-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 PIRSF PIRSF004654 1 292 9.1E-117 T 25-04-2017 IPR023605 Lipoprotein NlpI A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.2E-5 T 25-04-2017 IPR013105 Tetratricopeptide repeat 2 A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 Gene3D G3DSA:1.25.40.10 49 289 2.7E-31 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.022 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 SMART SM00028 96 129 2.0E-4 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 SMART SM00028 62 95 0.0033 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS01990 b1c1e60e3e4c662ad42b97c8cfd56c41 294 SUPERFAMILY SSF48452 27 283 1.12E-75 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 SMART SM00421 110 167 6.8E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 Pfam PF00196 Bacterial regulatory proteins, luxR family 112 158 2.3E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 SUPERFAMILY SSF46894 102 166 3.74E-10 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 127 143 1.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 155 1.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 113 127 1.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS17845 8fbb4940cfba75afca9cc439921c3284 183 Gene3D G3DSA:1.10.10.10 98 161 5.2E-10 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 Gene3D G3DSA:1.10.150.170 112 215 1.5E-37 T 25-04-2017 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 PIRSF PIRSF004486 1 312 5.9E-101 T 25-04-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 Pfam PF01795 MraW methylase family 5 310 1.6E-118 T 25-04-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 SUPERFAMILY SSF53335 7 113 2.78E-45 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 SUPERFAMILY SSF53335 213 311 2.78E-45 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 311 38.788 T 25-04-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 1 310 1.4E-127 T 25-04-2017 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 SUPERFAMILY SSF81799 114 213 8.11E-35 T 25-04-2017 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 Gene3D G3DSA:3.40.50.150 216 311 2.4E-51 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS03325 f60abf48c3a89e158409ec8805e1293e 313 Gene3D G3DSA:3.40.50.150 7 110 2.4E-51 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS24200 5160f7bbce99bd645904e682f94e6d4f 445 PIRSF PIRSF005353 7 444 2.5E-173 T 25-04-2017 IPR026033 Purine permease PbuG-like A4U88_RS24200 5160f7bbce99bd645904e682f94e6d4f 445 Pfam PF00860 Permease family 31 404 4.5E-40 T 25-04-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 ProSitePatterns PS01229 Hypothetical cof family signature 2. 220 242 - T 25-04-2017 A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 13 239 9.9E-21 T 25-04-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 Pfam PF08282 haloacid dehalogenase-like hydrolase 14 268 3.0E-52 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 Gene3D G3DSA:3.40.50.1000 186 270 1.1E-42 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 Gene3D G3DSA:3.40.50.1000 10 81 1.1E-42 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 SUPERFAMILY SSF56784 10 270 3.96E-54 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 14 268 2.7E-42 T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS15460 4f21adb0a808c44e48aed9013aa2a8d2 275 Gene3D G3DSA:3.30.1240.10 95 185 1.4E-14 T 25-04-2017 A4U88_RS10330 e2aa6b707c1c1cc6124ae28710fa0318 294 Pfam PF01435 Peptidase family M48 74 289 9.0E-39 T 25-04-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 A4U88_RS10330 e2aa6b707c1c1cc6124ae28710fa0318 294 Gene3D G3DSA:3.30.2010.10 69 156 1.2E-32 T 25-04-2017 A4U88_RS10330 e2aa6b707c1c1cc6124ae28710fa0318 294 Hamap MF_00188 Protease HtpX [htpX]. 1 290 26.441 T 25-04-2017 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 Pfam PF01197 Ribosomal protein L31 1 78 2.1E-22 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 SUPERFAMILY SSF143800 1 80 1.14E-20 T 25-04-2017 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.0E-13 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 1.0E-13 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.0E-13 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 26.06 T 25-04-2017 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS05120 61282a74c08ef00aeaa7fc8e00fc3b2d 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 1.6E-16 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS05865 fc73463eab434b4a9dfb70993aa1ab49 189 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 4 187 3.2E-74 T 25-04-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 A4U88_RS05865 fc73463eab434b4a9dfb70993aa1ab49 189 PIRSF PIRSF001296 1 189 1.7E-74 T 25-04-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 A4U88_RS05865 fc73463eab434b4a9dfb70993aa1ab49 189 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 1 188 34.089 T 25-04-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 A4U88_RS05865 fc73463eab434b4a9dfb70993aa1ab49 189 Pfam PF02669 K+-transporting ATPase, c chain 5 186 3.8E-70 T 25-04-2017 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 A4U88_RS01560 adcff12e5a30f2da8bcd003899d11801 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 3.9E-32 T 25-04-2017 IPR000390 Small multidrug resistance protein family GO:0016021 A4U88_RS01560 adcff12e5a30f2da8bcd003899d11801 105 SUPERFAMILY SSF103481 5 104 1.44E-21 T 25-04-2017 A4U88_RS04190 dae44ee05349120560897e9afa4484ab 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 5.0E-193 T 25-04-2017 IPR010520 UPF0255 family A4U88_RS04190 dae44ee05349120560897e9afa4484ab 415 Hamap MF_01063 Esterase FrsA [frsA]. 1 415 61.524 T 25-04-2017 IPR010520 UPF0255 family A4U88_RS04190 dae44ee05349120560897e9afa4484ab 415 SUPERFAMILY SSF53474 46 391 4.97E-45 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS04190 dae44ee05349120560897e9afa4484ab 415 Gene3D G3DSA:3.40.50.1820 347 392 8.8E-20 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS04190 dae44ee05349120560897e9afa4484ab 415 Gene3D G3DSA:3.40.50.1820 165 302 8.8E-20 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11820 cc849aa5fe9f4ba82beea8ff6645c8b5 460 Gene3D G3DSA:3.90.1150.10 327 453 3.1E-43 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS11820 cc849aa5fe9f4ba82beea8ff6645c8b5 460 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 262 299 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS11820 cc849aa5fe9f4ba82beea8ff6645c8b5 460 Gene3D G3DSA:3.40.640.10 78 326 3.9E-73 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS11820 cc849aa5fe9f4ba82beea8ff6645c8b5 460 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 21 454 2.4E-214 T 25-04-2017 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761 A4U88_RS11820 cc849aa5fe9f4ba82beea8ff6645c8b5 460 Pfam PF00202 Aminotransferase class-III 40 452 2.8E-100 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS11820 cc849aa5fe9f4ba82beea8ff6645c8b5 460 SUPERFAMILY SSF53383 30 452 1.11E-123 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Gene3D G3DSA:3.30.70.1450 228 282 6.0E-9 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 541 3.2E-45 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 169 3.7E-38 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 SUPERFAMILY SSF116726 227 282 1.44E-10 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 557 58.029 T 25-04-2017 IPR023017 Transport protein YbjL, putative A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF06826 Predicted Permease Membrane Region 17 181 8.4E-38 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF06826 Predicted Permease Membrane Region 385 554 1.9E-41 T 25-04-2017 IPR006512 YidE/YbjL duplication A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 SUPERFAMILY SSF116726 291 374 1.18E-10 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF02080 TrkA-C domain 305 372 1.3E-8 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Pfam PF02080 TrkA-C domain 227 281 4.4E-9 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS08030 09c4d5fb93b30c23b3d1fb7deb26867f 562 Gene3D G3DSA:3.30.70.1450 303 374 3.9E-6 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 162 4.1E-71 T 25-04-2017 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 Gene3D G3DSA:3.30.160.20 10 72 1.3E-30 T 25-04-2017 IPR014720 Double-stranded RNA-binding domain A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.576 T 25-04-2017 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.2E-30 T 25-04-2017 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 SUPERFAMILY SSF54211 79 159 1.72E-27 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 SUPERFAMILY SSF54768 9 75 7.32E-24 T 25-04-2017 A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 25-04-2017 IPR018192 Ribosomal protein S5, N-terminal, conserved site A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 Gene3D G3DSA:3.30.230.10 77 159 5.3E-34 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS22260 3891b7ca1d3c218b79aba8efafd1addf 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 2.2E-29 T 25-04-2017 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 A4U88_RS21895 54e96ac7c4b7ec21c878dbc3c6ff7e54 69 Pfam PF05532 CsbD-like 4 56 4.0E-23 T 25-04-2017 IPR008462 CsbD-like A4U88_RS21895 54e96ac7c4b7ec21c878dbc3c6ff7e54 69 PIRSF PIRSF039008 1 66 2.1E-33 T 25-04-2017 IPR026042 Stress response protein YjbJ A4U88_RS21895 54e96ac7c4b7ec21c878dbc3c6ff7e54 69 Gene3D G3DSA:1.10.1470.10 1 67 1.8E-32 T 25-04-2017 IPR008462 CsbD-like A4U88_RS21895 54e96ac7c4b7ec21c878dbc3c6ff7e54 69 SUPERFAMILY SSF69047 1 69 1.07E-27 T 25-04-2017 IPR008462 CsbD-like A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 61.34 T 25-04-2017 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 1.7E-86 T 25-04-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 25-04-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 2.5E-50 T 25-04-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 25-04-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Gene3D G3DSA:3.40.47.10 143 183 5.1E-62 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Gene3D G3DSA:3.40.47.10 268 386 5.1E-62 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 25-04-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 PIRSF PIRSF000429 1 387 1.7E-133 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 SUPERFAMILY SSF53901 263 386 1.23E-43 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 3.0E-145 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 4.9E-233 T 25-04-2017 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Gene3D G3DSA:3.40.47.10 4 126 2.1E-65 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 Gene3D G3DSA:3.40.47.10 184 267 2.1E-65 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS01035 0aaf15c3037d9131ab78c017872c04c6 387 SUPERFAMILY SSF53901 1 258 1.76E-80 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 Gene3D G3DSA:3.40.50.1170 5 190 6.3E-77 T 25-04-2017 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 SMART SM00870 5 323 6.3E-141 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 4.5E-17 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 4.5E-17 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 4.5E-17 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 25-04-2017 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 SUPERFAMILY SSF53774 3 335 1.02E-110 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 Pfam PF00710 Asparaginase, N-terminal 6 188 6.4E-65 T 25-04-2017 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 PIRSF PIRSF001220 1 334 3.7E-98 T 25-04-2017 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 25-04-2017 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 1.9E-128 T 25-04-2017 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 PIRSF PIRSF500176 2 332 3.2E-113 T 25-04-2017 A4U88_RS13320 b53c2b44bbc1dbf8fe6471c881067d9a 338 Gene3D G3DSA:3.40.50.40 211 336 1.2E-50 T 25-04-2017 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 A4U88_RS06140 cad960a6493cf8ea3b1764ce60a9d74b 347 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 12 344 2.4E-135 T 25-04-2017 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 A4U88_RS06140 cad960a6493cf8ea3b1764ce60a9d74b 347 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 171 180 - T 25-04-2017 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 A4U88_RS06140 cad960a6493cf8ea3b1764ce60a9d74b 347 Pfam PF01263 Aldose 1-epimerase 18 343 6.4E-80 T 25-04-2017 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 A4U88_RS06140 cad960a6493cf8ea3b1764ce60a9d74b 347 SUPERFAMILY SSF74650 4 344 1.13E-101 T 25-04-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 A4U88_RS06140 cad960a6493cf8ea3b1764ce60a9d74b 347 Gene3D G3DSA:2.70.98.10 9 344 3.8E-110 T 25-04-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 A4U88_RS06140 cad960a6493cf8ea3b1764ce60a9d74b 347 PIRSF PIRSF005096 1 346 4.2E-114 T 25-04-2017 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 A4U88_RS17650 04bda743c4f6b08d860a799a83eacfd3 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 275 1.0E-32 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17650 04bda743c4f6b08d860a799a83eacfd3 279 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 10 272 4.3E-113 T 25-04-2017 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 A4U88_RS17650 04bda743c4f6b08d860a799a83eacfd3 279 SUPERFAMILY SSF161098 19 266 2.22E-57 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17650 04bda743c4f6b08d860a799a83eacfd3 279 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 3 270 1.9E-112 T 25-04-2017 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 A4U88_RS17650 04bda743c4f6b08d860a799a83eacfd3 279 Gene3D G3DSA:1.10.3720.10 22 274 1.9E-54 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 SUPERFAMILY SSF53187 6 199 4.57E-91 T 25-04-2017 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 SUPERFAMILY SSF53187 300 390 4.57E-91 T 25-04-2017 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 PIRSF PIRSF005962 1 392 3.1E-127 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 SUPERFAMILY SSF55031 185 298 1.44E-29 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS16200 f473596b4af84a087082edd54e457770 393 Gene3D G3DSA:3.40.630.10 300 390 2.3E-103 T 25-04-2017 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 Gene3D G3DSA:3.40.630.10 2 180 2.3E-103 T 25-04-2017 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 Gene3D G3DSA:3.30.70.360 184 299 4.9E-40 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS16200 f473596b4af84a087082edd54e457770 393 Pfam PF07687 Peptidase dimerisation domain 187 283 1.4E-11 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS16200 f473596b4af84a087082edd54e457770 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 376 2.4E-110 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS16200 f473596b4af84a087082edd54e457770 393 Pfam PF01546 Peptidase family M20/M25/M40 75 385 4.2E-36 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 SUPERFAMILY SSF52540 7 226 4.5E-6 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 891 3.0E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 SMART SM00421 836 893 7.9E-21 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 SUPERFAMILY SSF48452 441 806 1.87E-158 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 2.2E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 2.2E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 2.2E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 Gene3D G3DSA:1.10.10.10 838 896 1.6E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 Gene3D G3DSA:1.25.40.10 441 811 4.6E-96 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 37.22 T 25-04-2017 IPR023768 Transcriptional regulator HTH-type, MalT A4U88_RS22805 d156d4847db798239a7b6595a9257128 904 SUPERFAMILY SSF46894 829 895 2.58E-17 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS02105 af2d36cce9aad678f1265fac3e2f9618 234 Gene3D G3DSA:3.40.50.300 5 227 1.5E-50 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02105 af2d36cce9aad678f1265fac3e2f9618 234 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 5 226 1.4E-106 T 25-04-2017 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 A4U88_RS02105 af2d36cce9aad678f1265fac3e2f9618 234 SUPERFAMILY SSF52540 4 229 3.92E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02105 af2d36cce9aad678f1265fac3e2f9618 234 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS02105 af2d36cce9aad678f1265fac3e2f9618 234 Pfam PF00005 ABC transporter 27 181 1.6E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS02105 af2d36cce9aad678f1265fac3e2f9618 234 SMART SM00382 36 229 8.1E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 8.6E-14 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 8.6E-14 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 8.6E-14 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 SMART SM00344 1 107 1.1E-33 T 25-04-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 4.1E-15 T 25-04-2017 A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 SUPERFAMILY SSF46785 1 61 7.49E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 Pfam PF01037 Lrp/AsnC ligand binding domain 67 131 1.2E-15 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 Gene3D G3DSA:3.30.70.920 54 129 1.1E-16 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 SUPERFAMILY SSF54909 66 136 1.22E-15 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS07090 5cd7ffe42f42303451e3e995601b97d9 144 Gene3D G3DSA:1.10.10.10 1 51 3.8E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11210 a9851080129f887388fdc5c28481bebc 122 Hamap MF_01581 UPF0482 protein YnfB [ynfB]. 1 122 32.329 T 25-04-2017 IPR009700 Protein of unknown function DUF1283 A4U88_RS11210 a9851080129f887388fdc5c28481bebc 122 ProDom PD073251 YNFB PERIPLASMIC SECRETED ORF9 PRECURSOR SIGNAL SIMILAR ECS2289 EXPORTED ESCHERICHIA 29 122 4.0E-30 T 25-04-2017 IPR009700 Protein of unknown function DUF1283 A4U88_RS11210 a9851080129f887388fdc5c28481bebc 122 Pfam PF06932 Protein of unknown function (DUF1283) 39 122 8.4E-40 T 25-04-2017 IPR009700 Protein of unknown function DUF1283 A4U88_RS02125 3378fe3f055c6d2b209296abd158da09 193 PIRSF PIRSF020680 1 193 3.1E-56 T 25-04-2017 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 A4U88_RS02125 3378fe3f055c6d2b209296abd158da09 193 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 6 189 1.2E-51 T 25-04-2017 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 A4U88_RS02125 3378fe3f055c6d2b209296abd158da09 193 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 5 191 1.9E-59 T 25-04-2017 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 A4U88_RS02125 3378fe3f055c6d2b209296abd158da09 193 SUPERFAMILY SSF159709 13 192 8.76E-54 T 25-04-2017 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 PRINTS PR00173 Glutamate-aspartate symporter signature 347 367 8.7E-15 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 8.7E-15 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 8.7E-15 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 8.7E-15 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 PRINTS PR00173 Glutamate-aspartate symporter signature 320 339 8.7E-15 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 PRINTS PR00173 Glutamate-aspartate symporter signature 39 64 8.7E-15 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 Gene3D G3DSA:1.10.3860.10 4 400 9.1E-82 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 402 36.874 T 25-04-2017 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 Pfam PF00375 Sodium:dicarboxylate symporter family 13 392 1.2E-61 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS21145 c83173910541b424bf9691390a6a4bb9 411 SUPERFAMILY SSF118215 13 395 6.93E-95 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 Pfam PF02311 AraC-like ligand binding domain 40 113 1.2E-6 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 275 8.2E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 275 291 8.2E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 Gene3D G3DSA:1.10.10.60 246 295 5.0E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 SMART SM00342 208 291 1.0E-21 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 TIGRFAM TIGR02297 HpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA 8 292 2.4E-123 T 25-04-2017 IPR011983 4-hydroxyphenylacetate catabolism regulatory protein HpaA A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 Pfam PF12833 Helix-turn-helix domain 214 292 4.0E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 Gene3D G3DSA:2.60.120.280 45 176 1.2E-8 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 SUPERFAMILY SSF46689 246 293 5.82E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02715 980e7e99caad5899f180822ef6f12906 298 SUPERFAMILY SSF51182 38 107 3.16E-10 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS18840 405071e8293b1fa2aa63acb599330735 60 Pfam PF09926 Uncharacterized small protein (DUF2158) 4 42 3.0E-6 T 25-04-2017 IPR019226 Protein of unknown function DUF2158 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Gene3D G3DSA:1.10.3550.10 123 157 1.1E-32 T 25-04-2017 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Gene3D G3DSA:1.10.3550.10 391 503 1.1E-32 T 25-04-2017 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Gene3D G3DSA:1.10.3210.10 4 122 4.9E-67 T 25-04-2017 IPR006674 HD domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Gene3D G3DSA:1.10.3210.10 183 268 4.9E-67 T 25-04-2017 IPR006674 HD domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 505 52.178 T 25-04-2017 IPR020779 Deoxyguanosinetriphosphate triphosphohydrolase, proteobacteria GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Gene3D G3DSA:1.10.3410.10 269 390 2.6E-33 T 25-04-2017 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Pfam PF13286 Phosphohydrolase-associated domain 430 500 1.9E-5 T 25-04-2017 IPR026875 Phosphohydrolase-associated domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 503 2.9E-123 T 25-04-2017 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 Pfam PF01966 HD domain 66 132 1.4E-9 T 25-04-2017 IPR006674 HD domain A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 SUPERFAMILY SSF109604 251 432 4.49E-63 T 25-04-2017 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 SUPERFAMILY SSF109604 24 134 4.49E-63 T 25-04-2017 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 SUPERFAMILY SSF109604 182 215 4.49E-63 T 25-04-2017 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 SUPERFAMILY SSF109604 484 502 4.49E-63 T 25-04-2017 A4U88_RS03500 890708c1f286848a0bd488444b34c92a 505 SMART SM00471 62 282 2.9E-10 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 Pfam PF00672 HAMP domain 155 223 4.1E-10 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 Pfam PF07730 Histidine kinase 364 425 3.9E-16 T 25-04-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 SMART SM00387 466 558 8.9E-8 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 128 1.5E-23 T 25-04-2017 IPR029095 NarX-like, N-terminal A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 556 7.5E-9 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 SMART SM00304 174 227 0.0028 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 SUPERFAMILY SSF55874 433 556 1.31E-15 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 Gene3D G3DSA:3.30.565.10 426 556 6.0E-9 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS17815 ddad71483f7b0a2e949bed6ca7c81e20 558 SUPERFAMILY SSF158472 174 225 1.31E-5 T 25-04-2017 A4U88_RS10935 eb71eda7670b7efc800660c25baab4e3 126 Pfam PF01042 Endoribonuclease L-PSP 13 123 7.3E-20 T 25-04-2017 IPR006175 YjgF/YER057c/UK114 family A4U88_RS10935 eb71eda7670b7efc800660c25baab4e3 126 Gene3D G3DSA:3.30.1330.40 3 126 1.2E-30 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS10935 eb71eda7670b7efc800660c25baab4e3 126 SUPERFAMILY SSF55298 4 125 5.5E-28 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS21385 a056c924e6b9ea88f51acf5026ff48ea 184 PIRSF PIRSF006118 9 184 1.7E-74 T 25-04-2017 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS21385 a056c924e6b9ea88f51acf5026ff48ea 184 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 22 175 6.5E-71 T 25-04-2017 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS21385 a056c924e6b9ea88f51acf5026ff48ea 184 Pfam PF08282 haloacid dehalogenase-like hydrolase 90 154 5.1E-9 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS21385 a056c924e6b9ea88f51acf5026ff48ea 184 SUPERFAMILY SSF56784 18 176 5.98E-42 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS21385 a056c924e6b9ea88f51acf5026ff48ea 184 Gene3D G3DSA:3.40.50.1000 12 177 6.9E-49 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS18390 59ffca9d34bdd2b1d397b8ff7d491547 324 Pfam PF13413 Helix-turn-helix domain 18 79 4.9E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS18390 59ffca9d34bdd2b1d397b8ff7d491547 324 Gene3D G3DSA:1.10.260.40 8 82 1.5E-14 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS18390 59ffca9d34bdd2b1d397b8ff7d491547 324 Pfam PF13464 Domain of unknown function (DUF4115) 247 321 3.1E-25 T 25-04-2017 IPR025194 Domain of unknown function DUF4115 A4U88_RS18390 59ffca9d34bdd2b1d397b8ff7d491547 324 SUPERFAMILY SSF47413 11 80 2.95E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS18390 59ffca9d34bdd2b1d397b8ff7d491547 324 SMART SM00530 18 79 3.9E-5 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS18390 59ffca9d34bdd2b1d397b8ff7d491547 324 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 324 44.611 T 25-04-2017 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 Gene3D G3DSA:2.160.10.10 89 255 1.6E-64 T 25-04-2017 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 134 162 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 8.4E-13 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 5.2E-25 T 25-04-2017 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 Gene3D G3DSA:1.10.166.10 1 70 3.5E-32 T 25-04-2017 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0017 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 58.725 T 25-04-2017 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 273 2.1E-162 T 25-04-2017 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 A4U88_RS19290 dacd727bd79c0878cda411fb29aa6b56 274 SUPERFAMILY SSF51161 1 256 1.52E-79 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 PRINTS PR01438 Universal stress protein signature 120 142 6.2E-12 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 PRINTS PR01438 Universal stress protein signature 2 20 6.2E-12 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 PRINTS PR01438 Universal stress protein signature 103 115 6.2E-12 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 SUPERFAMILY SSF52402 2 142 8.37E-28 T 25-04-2017 A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 Gene3D G3DSA:3.40.50.620 2 142 9.0E-31 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 PIRSF PIRSF006276 1 142 1.0E-17 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS08815 55460fb9f9f00b19e65fdee88e2eb6b6 142 Pfam PF00582 Universal stress protein family 1 142 2.8E-24 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS07215 a593f7cdb7bfa365f43a54a85e7f79ff 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 36 68 2.5E-13 T 25-04-2017 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 A4U88_RS07215 a593f7cdb7bfa365f43a54a85e7f79ff 88 SUPERFAMILY SSF57716 38 72 2.61E-7 T 25-04-2017 A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 SMART SM00357 9 73 9.8E-12 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 SUPERFAMILY SSF50249 5 71 8.78E-19 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 PRINTS PR00050 Cold shock protein signature 46 64 1.7E-12 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 PRINTS PR00050 Cold shock protein signature 31 40 1.7E-12 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 PRINTS PR00050 Cold shock protein signature 10 25 1.7E-12 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 PIRSF PIRSF002599 3 73 1.7E-17 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 Gene3D G3DSA:2.40.50.140 9 71 1.0E-20 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08360 136484c42c8754e4a849a5c50d9563f0 73 Pfam PF00313 'Cold-shock' DNA-binding domain 10 71 3.2E-19 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS13535 9aae6d881359c6302d63cb407943c521 213 Pfam PF01081 KDPG and KHG aldolase 9 203 1.2E-87 T 25-04-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS13535 9aae6d881359c6302d63cb407943c521 213 Gene3D G3DSA:3.20.20.70 2 209 1.6E-77 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS13535 9aae6d881359c6302d63cb407943c521 213 SUPERFAMILY SSF51569 3 208 7.14E-69 T 25-04-2017 A4U88_RS13535 9aae6d881359c6302d63cb407943c521 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 25-04-2017 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS13535 9aae6d881359c6302d63cb407943c521 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 25-04-2017 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS13535 9aae6d881359c6302d63cb407943c521 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 1.6E-85 T 25-04-2017 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS19140 c0d919f3985befdba4b3c84ade24400f 182 Gene3D G3DSA:3.10.640.10 1 179 1.0E-81 T 25-04-2017 A4U88_RS19140 c0d919f3985befdba4b3c84ade24400f 182 Pfam PF07152 YaeQ protein 1 173 1.3E-75 T 25-04-2017 IPR009822 YaeQ A4U88_RS19140 c0d919f3985befdba4b3c84ade24400f 182 PIRSF PIRSF011484 1 181 9.7E-70 T 25-04-2017 IPR009822 YaeQ A4U88_RS19140 c0d919f3985befdba4b3c84ade24400f 182 SUPERFAMILY SSF52980 2 178 3.22E-72 T 25-04-2017 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 A4U88_RS19140 c0d919f3985befdba4b3c84ade24400f 182 SMART SM01322 1 176 5.9E-120 T 25-04-2017 IPR009822 YaeQ A4U88_RS06880 1f2480313aca9eac1a13e1e5c7c8ac26 170 Pfam PF00583 Acetyltransferase (GNAT) family 64 145 1.8E-14 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS06880 1f2480313aca9eac1a13e1e5c7c8ac26 170 Gene3D G3DSA:3.40.630.30 1 152 1.8E-29 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06880 1f2480313aca9eac1a13e1e5c7c8ac26 170 SUPERFAMILY SSF55729 1 152 8.23E-26 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 SUPERFAMILY SSF46626 175 283 1.07E-17 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 SUPERFAMILY SSF46626 314 418 7.05E-18 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Pfam PF00034 Cytochrome c 29 129 1.3E-5 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Pfam PF00034 Cytochrome c 179 283 4.3E-4 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Gene3D G3DSA:1.10.760.10 327 426 2.7E-19 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 318 405 7.3E-10 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Gene3D G3DSA:1.10.710.10 314 326 3.7E-4 T 25-04-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Gene3D G3DSA:1.10.710.10 154 186 3.7E-4 T 25-04-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Gene3D G3DSA:1.10.760.10 187 282 1.7E-13 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 Gene3D G3DSA:1.10.760.10 26 129 4.3E-15 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 SUPERFAMILY SSF46626 27 129 8.12E-18 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19800 e3552403872c8428999cf280b63b78ef 465 PIRSF PIRSF000018 2 448 9.3E-157 T 25-04-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 A4U88_RS21505 ab83fffb0eaf4eeed34c2103b9ba0ab9 484 Gene3D G3DSA:3.50.50.60 2 222 1.7E-9 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21505 ab83fffb0eaf4eeed34c2103b9ba0ab9 484 SUPERFAMILY SSF51905 1 228 4.14E-14 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21505 ab83fffb0eaf4eeed34c2103b9ba0ab9 484 Pfam PF13454 FAD-NAD(P)-binding 6 157 2.1E-25 T 25-04-2017 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 8.0E-26 T 25-04-2017 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Gene3D G3DSA:1.20.5.100 206 233 5.3E-5 T 25-04-2017 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 SUPERFAMILY SSF52413 311 419 3.66E-25 T 25-04-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 SMART SM00984 324 420 4.8E-26 T 25-04-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 75.792 T 25-04-2017 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 SUPERFAMILY SSF48179 206 298 1.68E-27 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 187 2.6E-58 T 25-04-2017 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 PIRSF PIRSF500136 1 420 2.4E-147 T 25-04-2017 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 SUPERFAMILY SSF51735 5 198 1.48E-45 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 5.1E-20 T 25-04-2017 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Gene3D G3DSA:3.40.50.720 237 419 2.1E-47 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 1.3E-119 T 25-04-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 PIRSF PIRSF000124 4 418 8.5E-74 T 25-04-2017 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 A4U88_RS00560 3c252dd951dc9ff99f5578b0a7b216c0 420 Gene3D G3DSA:3.40.50.720 6 202 2.8E-57 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 166 244 1.9E-5 T 25-04-2017 IPR006260 TonB, C-terminal GO:0006810 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 SUPERFAMILY SSF74653 151 246 8.63E-8 T 25-04-2017 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 PRINTS PR01217 Proline rich extensin signature 71 87 1.4E-11 T 25-04-2017 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 PRINTS PR01217 Proline rich extensin signature 50 71 1.4E-11 T 25-04-2017 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 PRINTS PR01217 Proline rich extensin signature 110 135 1.4E-11 T 25-04-2017 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 PRINTS PR01217 Proline rich extensin signature 90 107 1.4E-11 T 25-04-2017 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 Pfam PF16031 TonB N-terminal region 34 147 5.6E-7 T 25-04-2017 A4U88_RS02550 a2a61ebe86fa11840f038a08af6dec4a 248 Gene3D G3DSA:3.30.1150.10 130 246 3.9E-13 T 25-04-2017 A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 9.3E-12 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 Gene3D G3DSA:3.10.20.30 2 106 8.5E-34 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 SUPERFAMILY SSF54292 3 106 1.16E-28 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 3.5E-32 T 25-04-2017 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 Gene3D G3DSA:1.10.1060.10 107 232 1.0E-36 T 25-04-2017 A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 SUPERFAMILY SSF46548 107 229 4.01E-31 T 25-04-2017 IPR009051 Alpha-helical ferredoxin GO:0051536 A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS01580 e3ac6ce026c1ab25d2c1a608ad9bc01a 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 2.3E-96 T 25-04-2017 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 SMART SM01134 67 227 3.6E-55 T 25-04-2017 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 SUPERFAMILY SSF46785 2 59 4.58E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 Gene3D G3DSA:1.10.10.10 4 52 2.9E-9 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 SUPERFAMILY SSF100950 68 227 1.81E-27 T 25-04-2017 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 Gene3D G3DSA:3.40.50.1360 71 206 3.9E-11 T 25-04-2017 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 SMART SM00420 4 56 2.9E-18 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 25-04-2017 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 Pfam PF00455 DeoR C terminal sensor domain 70 226 6.6E-43 T 25-04-2017 IPR014036 DeoR C-terminal sensor domain A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 2.1E-15 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 1.9E-5 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS12840 1569ecd992735724e68d928fc1df4788 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 1.9E-5 T 25-04-2017 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 A4U88_RS04485 f23ca984ca3867ca312dc3fa3d507f92 196 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 47 193 1.2E-68 T 25-04-2017 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 A4U88_RS04485 f23ca984ca3867ca312dc3fa3d507f92 196 SUPERFAMILY SSF56925 38 196 9.42E-82 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS04485 f23ca984ca3867ca312dc3fa3d507f92 196 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 3 196 45.094 T 25-04-2017 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 A4U88_RS04485 f23ca984ca3867ca312dc3fa3d507f92 196 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 46 184 3.0E-54 T 25-04-2017 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP KEGG: 00565+2.3.1.25 A4U88_RS04485 f23ca984ca3867ca312dc3fa3d507f92 196 Gene3D G3DSA:2.40.160.20 37 196 2.2E-86 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS24165 1bc60126fff07a288a8182a2408796ff 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS24165 1bc60126fff07a288a8182a2408796ff 258 Gene3D G3DSA:3.40.50.300 12 252 5.2E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24165 1bc60126fff07a288a8182a2408796ff 258 SUPERFAMILY SSF52540 12 245 1.01E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24165 1bc60126fff07a288a8182a2408796ff 258 Pfam PF00005 ABC transporter 27 182 4.1E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS24165 1bc60126fff07a288a8182a2408796ff 258 SMART SM00382 36 238 3.0E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24165 1bc60126fff07a288a8182a2408796ff 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 12 258 2.6E-120 T 25-04-2017 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 A4U88_RS15320 264d0e5af03883c222949c8683662b3f 198 TIGRFAM TIGR02287 PaaY: phenylacetic acid degradation protein PaaY 3 194 4.1E-103 T 25-04-2017 IPR011974 Phenylacetic acid degradation protein PaaY A4U88_RS15320 264d0e5af03883c222949c8683662b3f 198 Gene3D G3DSA:2.160.10.10 9 169 5.7E-42 T 25-04-2017 A4U88_RS15320 264d0e5af03883c222949c8683662b3f 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 45 9.0E-6 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS15320 264d0e5af03883c222949c8683662b3f 198 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 8.8E-8 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS15320 264d0e5af03883c222949c8683662b3f 198 SUPERFAMILY SSF51161 2 167 7.21E-45 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 25-04-2017 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 PIRSF PIRSF002161 1 179 2.8E-66 T 25-04-2017 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 Pfam PF00281 Ribosomal protein L5 24 80 9.4E-29 T 25-04-2017 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 Gene3D G3DSA:3.30.1440.10 2 179 5.0E-80 T 25-04-2017 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 6.2E-41 T 25-04-2017 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.78 T 25-04-2017 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22285 1cbe314b7a90c9725cd4d853367b65da 179 SUPERFAMILY SSF55282 4 179 1.53E-78 T 25-04-2017 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 Pfam PF01578 Cytochrome C assembly protein 89 296 3.5E-54 T 25-04-2017 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 6.1E-60 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 2.1E-283 T 25-04-2017 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.5E-94 T 25-04-2017 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 A4U88_RS17250 6cd993867b9f331d3a6eaa89f95307a0 656 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 3.0E-131 T 25-04-2017 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 Pfam PF13411 MerR HTH family regulatory protein 1 67 1.0E-18 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 Gene3D G3DSA:1.10.1660.10 1 54 2.9E-23 T 25-04-2017 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 SMART SM00422 1 70 1.2E-28 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 Gene3D G3DSA:1.10.1660.10 55 130 2.2E-25 T 25-04-2017 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 8.3E-7 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 8.3E-7 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 8.3E-7 T 25-04-2017 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 SUPERFAMILY SSF46955 1 126 5.86E-35 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS05370 790815512a31ae6159efd7a17ecfcc18 133 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.7E-59 T 25-04-2017 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 A4U88_RS17665 6579939e4f9f422781b3e0dc4f6930aa 195 Gene3D G3DSA:2.60.460.10 25 191 9.2E-73 T 25-04-2017 A4U88_RS17665 6579939e4f9f422781b3e0dc4f6930aa 195 Pfam PF06572 Protein of unknown function (DUF1131) 22 190 1.9E-78 T 25-04-2017 IPR010938 Protein of unknown function DUF1131 A4U88_RS17665 6579939e4f9f422781b3e0dc4f6930aa 195 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 16 189 8.0E-53 T 25-04-2017 IPR010938 Protein of unknown function DUF1131 A4U88_RS23815 e2bbe2f0e57cb951bb546ecdde1a099f 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 41.411 T 25-04-2017 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 A4U88_RS23815 e2bbe2f0e57cb951bb546ecdde1a099f 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 1.5E-8 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS23815 e2bbe2f0e57cb951bb546ecdde1a099f 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS23815 e2bbe2f0e57cb951bb546ecdde1a099f 198 Gene3D G3DSA:1.10.357.10 6 193 1.2E-36 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS23815 e2bbe2f0e57cb951bb546ecdde1a099f 198 SUPERFAMILY SSF46689 7 75 1.05E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS23815 e2bbe2f0e57cb951bb546ecdde1a099f 198 SUPERFAMILY SSF48498 86 193 1.42E-6 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS12470 8a62cda151e9b602ac99d3721e82ba8c 301 Gene3D G3DSA:3.30.420.40 2 134 7.6E-28 T 25-04-2017 A4U88_RS12470 8a62cda151e9b602ac99d3721e82ba8c 301 Pfam PF00480 ROK family 3 297 5.8E-59 T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS12470 8a62cda151e9b602ac99d3721e82ba8c 301 SUPERFAMILY SSF53067 3 298 5.38E-55 T 25-04-2017 A4U88_RS12470 8a62cda151e9b602ac99d3721e82ba8c 301 Gene3D G3DSA:3.30.420.40 135 275 7.9E-41 T 25-04-2017 A4U88_RS00885 6f5bb7013427139497c3c1832a49e101 233 PIRSF PIRSF039137 1 233 3.0E-104 T 25-04-2017 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 A4U88_RS00885 6f5bb7013427139497c3c1832a49e101 233 Pfam PF00005 ABC transporter 17 161 6.6E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS00885 6f5bb7013427139497c3c1832a49e101 233 SUPERFAMILY SSF52540 2 230 2.24E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00885 6f5bb7013427139497c3c1832a49e101 233 SMART SM00382 26 212 9.4E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS00885 6f5bb7013427139497c3c1832a49e101 233 Gene3D G3DSA:3.40.50.300 1 228 3.3E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00885 6f5bb7013427139497c3c1832a49e101 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 Gene3D G3DSA:3.20.20.80 5 406 3.3E-70 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 SUPERFAMILY SSF51011 406 492 4.58E-26 T 25-04-2017 A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 Gene3D G3DSA:2.60.40.1180 409 492 2.3E-27 T 25-04-2017 IPR013780 Glycosyl hydrolase, all-beta A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 SMART SM00642 5 403 2.8E-48 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 Pfam PF00128 Alpha amylase, catalytic domain 27 369 4.0E-22 T 25-04-2017 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 SUPERFAMILY SSF51445 7 404 2.24E-94 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS06710 6f7f739a80aba77bcaf1b4e4255d711c 496 PIRSF PIRSF001021 1 495 5.4E-203 T 25-04-2017 IPR013776 Alpha-amylase, thermostable GO:0004553|GO:0005509|GO:0005975 KEGG: 00500+3.2.1.1 A4U88_RS13835 128e7de906dc26f66158c84ea8e1e132 344 SUPERFAMILY SSF56281 59 291 4.85E-38 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS13835 128e7de906dc26f66158c84ea8e1e132 344 PIRSF PIRSF038896 1 329 2.6E-105 T 25-04-2017 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 A4U88_RS13835 128e7de906dc26f66158c84ea8e1e132 344 Pfam PF12706 Beta-lactamase superfamily domain 88 285 3.1E-45 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS13835 128e7de906dc26f66158c84ea8e1e132 344 Gene3D G3DSA:3.60.15.10 60 331 1.4E-91 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS13835 128e7de906dc26f66158c84ea8e1e132 344 SMART SM00849 77 284 5.5E-4 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 Gene3D G3DSA:3.40.50.300 3 168 7.7E-49 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 Pfam PF01202 Shikimate kinase 11 168 2.0E-46 T 25-04-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 SUPERFAMILY SSF52540 4 169 4.56E-26 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 42.705 T 25-04-2017 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 PRINTS PR01100 Shikimate kinase family signature 5 20 2.6E-23 T 25-04-2017 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 PRINTS PR01100 Shikimate kinase family signature 29 42 2.6E-23 T 25-04-2017 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 PRINTS PR01100 Shikimate kinase family signature 95 112 2.6E-23 T 25-04-2017 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 PRINTS PR01100 Shikimate kinase family signature 57 65 2.6E-23 T 25-04-2017 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 PRINTS PR01100 Shikimate kinase family signature 74 83 2.6E-23 T 25-04-2017 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 25.086 T 25-04-2017 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS04615 44c187a9c44dd8f9949e51ad4ad9b955 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 25-04-2017 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 Pfam PF00005 ABC transporter 40 191 5.7E-31 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 Gene3D G3DSA:3.40.50.300 7 267 7.2E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 SMART SM00382 48 241 3.9E-18 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 SUPERFAMILY SSF52540 25 263 7.5E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 2.9E-29 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS13170 1789b03fad57ac9117d04e722d2c075d 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 2.9E-19 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS12095 4924b1ed268465d328d4d5ff9abac2b4 226 SUPERFAMILY SSF53335 12 216 2.59E-27 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS12095 4924b1ed268465d328d4d5ff9abac2b4 226 Pfam PF13489 Methyltransferase domain 30 185 1.8E-14 T 25-04-2017 A4U88_RS12095 4924b1ed268465d328d4d5ff9abac2b4 226 Gene3D G3DSA:3.40.50.150 22 187 3.5E-22 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04255 149896c3bf683a0b57764b21a72c5c63 272 SUPERFAMILY SSF46894 20 103 4.82E-14 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS04255 149896c3bf683a0b57764b21a72c5c63 272 SMART SM00862 24 102 4.9E-12 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS04255 149896c3bf683a0b57764b21a72c5c63 272 Pfam PF00486 Transcriptional regulatory protein, C terminal 29 102 3.8E-11 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS04255 149896c3bf683a0b57764b21a72c5c63 272 Gene3D G3DSA:1.10.10.10 26 105 7.3E-15 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14480 9dc1f1bc4e68de66f6562102fbf75b5d 123 PIRSF PIRSF018634 2 122 6.4E-33 T 25-04-2017 IPR009387 Toxin HigB-2 A4U88_RS14480 9dc1f1bc4e68de66f6562102fbf75b5d 123 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 4 119 1.2E-35 T 25-04-2017 IPR009387 Toxin HigB-2 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 89 107 - T 25-04-2017 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 398 5.8E-128 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 Gene3D G3DSA:3.40.47.10 154 202 4.9E-51 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 Gene3D G3DSA:3.40.47.10 285 399 4.9E-51 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 SUPERFAMILY SSF53901 279 400 1.96E-37 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 Pfam PF02803 Thiolase, C-terminal domain 279 400 4.3E-38 T 25-04-2017 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 Pfam PF00108 Thiolase, N-terminal domain 8 269 1.7E-73 T 25-04-2017 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 Gene3D G3DSA:3.40.47.10 8 128 8.4E-63 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 Gene3D G3DSA:3.40.47.10 203 284 8.4E-63 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 ProSitePatterns PS00737 Thiolases signature 2. 349 365 - T 25-04-2017 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 ProSitePatterns PS00099 Thiolases active site. 384 397 - T 25-04-2017 IPR020610 Thiolase, active site GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 PIRSF PIRSF000429 2 403 1.9E-121 T 25-04-2017 IPR002155 Thiolase GO:0008152|GO:0016747 A4U88_RS08800 95d897007ab81418cdd9d88b1ec78558 403 SUPERFAMILY SSF53901 8 277 3.01E-75 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 170 231 3.3E-17 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 Gene3D G3DSA:2.60.40.360 27 144 1.7E-44 T 25-04-2017 IPR008962 PapD-like A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 Gene3D G3DSA:2.60.40.1070 152 243 5.7E-30 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 SUPERFAMILY SSF49584 154 243 1.44E-25 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 PRINTS PR00969 Pili chaperone signature 73 94 1.1E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 PRINTS PR00969 Pili chaperone signature 27 36 1.1E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 PRINTS PR00969 Pili chaperone signature 103 120 1.1E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 PRINTS PR00969 Pili chaperone signature 126 141 1.1E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 PRINTS PR00969 Pili chaperone signature 165 180 1.1E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 SUPERFAMILY SSF49354 27 145 2.62E-39 T 25-04-2017 IPR008962 PapD-like A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 144 2.0E-38 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS04275 b0309ab87613e1826269338809f8d410 249 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 102 119 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 Gene3D G3DSA:2.60.120.10 222 380 1.6E-50 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 TIGRFAM TIGR03404 bicupin_oxalic: bicupin, oxalate decarboxylase family 29 375 3.8E-121 T 25-04-2017 IPR017774 Bicupin, oxalate decarboxylase/oxidase GO:0033609 KEGG: 00630+4.1.1.2|MetaCyc: PWY-6698 A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 SMART SM00835 54 197 4.7E-21 T 25-04-2017 IPR006045 Cupin 1 GO:0045735 A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 SMART SM00835 233 375 1.4E-25 T 25-04-2017 IPR006045 Cupin 1 GO:0045735 A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 SUPERFAMILY SSF51182 43 380 8.06E-87 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 23 3.7E-5 T 25-04-2017 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 Pfam PF00190 Cupin 234 367 1.5E-23 T 25-04-2017 IPR006045 Cupin 1 GO:0045735 A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 Pfam PF00190 Cupin 66 189 8.3E-20 T 25-04-2017 IPR006045 Cupin 1 GO:0045735 A4U88_RS11405 7ae59ef526bcda05d9ac5eecfdaa6614 389 Gene3D G3DSA:2.60.120.10 66 213 2.5E-46 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS10830 45f80b99557299ef9d546c5e1838137a 298 Gene3D G3DSA:3.20.20.100 2 292 7.1E-67 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS10830 45f80b99557299ef9d546c5e1838137a 298 SUPERFAMILY SSF51430 3 295 1.28E-73 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS10830 45f80b99557299ef9d546c5e1838137a 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 7.2E-7 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS10830 45f80b99557299ef9d546c5e1838137a 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 7.2E-7 T 25-04-2017 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 A4U88_RS10830 45f80b99557299ef9d546c5e1838137a 298 Pfam PF00248 Aldo/keto reductase family 17 291 9.2E-61 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 PIRSF PIRSF009451 1 501 1.0E-255 T 25-04-2017 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 SUPERFAMILY SSF100950 233 498 9.77E-60 T 25-04-2017 A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 23 501 4.7E-236 T 25-04-2017 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 Gene3D G3DSA:3.40.1080.10 19 229 6.6E-102 T 25-04-2017 A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 35 499 1.8E-255 T 25-04-2017 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 Gene3D G3DSA:3.40.810.20 233 474 2.4E-77 T 25-04-2017 A4U88_RS15850 de986a9463b4cb9bd94b5590b6034e80 501 SUPERFAMILY SSF100950 19 229 1.47E-73 T 25-04-2017 A4U88_RS18475 62b5bbaaf1530e2f7d3efaa69701bd45 211 PIRSF PIRSF008159 1 211 2.3E-71 T 25-04-2017 IPR016537 Uncharacterised conserved protein UCP008159, A4U88_RS18475 62b5bbaaf1530e2f7d3efaa69701bd45 211 Pfam PF06226 Protein of unknown function (DUF1007) 8 210 5.7E-64 T 25-04-2017 IPR010412 Protein of unknown function DUF1007 A4U88_RS09105 fbcd57b9874cc3bfd001b6e72380fe41 192 Hamap MF_00780 Protein YceI [yceI]. 2 192 44.402 T 25-04-2017 IPR023480 Uncharacterised protein family UPF0312/YceI A4U88_RS09105 fbcd57b9874cc3bfd001b6e72380fe41 192 SMART SM00867 25 189 4.1E-70 T 25-04-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like A4U88_RS09105 fbcd57b9874cc3bfd001b6e72380fe41 192 Gene3D G3DSA:2.40.128.110 23 191 1.8E-59 T 25-04-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like A4U88_RS09105 fbcd57b9874cc3bfd001b6e72380fe41 192 Pfam PF04264 YceI-like domain 26 187 1.3E-40 T 25-04-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like A4U88_RS09105 fbcd57b9874cc3bfd001b6e72380fe41 192 SUPERFAMILY SSF101874 23 190 2.35E-54 T 25-04-2017 IPR007372 Lipid/polyisoprenoid-binding, YceI-like A4U88_RS13645 993cff5ca56b27905ffdcfde1f9e8b14 645 SUPERFAMILY SSF54534 444 641 1.16E-18 T 25-04-2017 A4U88_RS13645 993cff5ca56b27905ffdcfde1f9e8b14 645 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 437 546 1.1E-18 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS13645 993cff5ca56b27905ffdcfde1f9e8b14 645 Gene3D G3DSA:3.10.50.40 526 642 1.1E-18 T 25-04-2017 A4U88_RS13645 993cff5ca56b27905ffdcfde1f9e8b14 645 Gene3D G3DSA:1.10.287.460 436 525 1.3E-27 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS13645 993cff5ca56b27905ffdcfde1f9e8b14 645 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 551 639 8.0E-8 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS21090 e93aee78f1dfd8f00cbe135c881fd662 421 SUPERFAMILY SSF53383 24 419 1.18E-131 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS21090 e93aee78f1dfd8f00cbe135c881fd662 421 Pfam PF00202 Aminotransferase class-III 22 419 7.8E-127 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS21090 e93aee78f1dfd8f00cbe135c881fd662 421 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 235 272 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS21090 e93aee78f1dfd8f00cbe135c881fd662 421 Gene3D G3DSA:3.90.1150.10 304 420 1.4E-40 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS21090 e93aee78f1dfd8f00cbe135c881fd662 421 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 8 420 1.7E-196 T 25-04-2017 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 A4U88_RS21090 e93aee78f1dfd8f00cbe135c881fd662 421 Gene3D G3DSA:3.40.640.10 58 303 4.5E-86 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS21485 584a0add265bfc347c7feb1c7a126ce0 115 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 12 113 3.5E-39 T 25-04-2017 IPR020044 PRD domain protein, EF0829/AHA3910 A4U88_RS21485 584a0add265bfc347c7feb1c7a126ce0 115 SUPERFAMILY SSF63520 33 113 4.58E-7 T 25-04-2017 IPR011608 PRD domain GO:0006355 A4U88_RS08420 c4a395de727759f61db11fa977b06d7c 215 SMART SM00849 12 192 2.4E-43 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08420 c4a395de727759f61db11fa977b06d7c 215 Gene3D G3DSA:3.60.15.10 2 210 8.0E-67 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08420 c4a395de727759f61db11fa977b06d7c 215 SUPERFAMILY SSF56281 2 209 7.21E-62 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS08420 c4a395de727759f61db11fa977b06d7c 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 2.0E-32 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS02340 cf5e176c38888dde8744ed7e172d5896 372 Pfam PF01844 HNH endonuclease 299 349 9.6E-5 T 25-04-2017 IPR002711 HNH endonuclease GO:0003676|GO:0004519 A4U88_RS02340 cf5e176c38888dde8744ed7e172d5896 372 SMART SM00507 286 345 2.6E-5 T 25-04-2017 IPR003615 HNH nuclease A4U88_RS10415 79b7564f897abe9210beaded2422ce13 284 Gene3D G3DSA:1.10.3470.10 54 267 3.3E-11 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10415 79b7564f897abe9210beaded2422ce13 284 Pfam PF00950 ABC 3 transport family 14 268 9.1E-96 T 25-04-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 A4U88_RS10415 79b7564f897abe9210beaded2422ce13 284 SUPERFAMILY SSF81345 8 266 4.84E-44 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 47 60 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 SUPERFAMILY SSF53850 8 244 4.3E-74 T 25-04-2017 A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 Gene3D G3DSA:3.40.190.10 206 245 9.0E-47 T 25-04-2017 A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 Gene3D G3DSA:3.40.190.10 23 101 9.0E-47 T 25-04-2017 A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 SMART SM00062 25 245 1.7E-70 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 Gene3D G3DSA:3.40.190.10 102 205 1.9E-34 T 25-04-2017 A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 SMART SM00079 25 244 5.6E-8 T 25-04-2017 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 A4U88_RS07210 3cda7362cb63df39fabb10a9eeb414c3 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 243 6.3E-70 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS12385 ce70692febabf6b36097456e1124c838 304 Gene3D G3DSA:3.40.50.300 36 287 3.0E-106 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12385 ce70692febabf6b36097456e1124c838 304 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 51 274 1.0E-111 T 25-04-2017 IPR022488 Polyphosphate kinase-2-related A4U88_RS12385 ce70692febabf6b36097456e1124c838 304 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 51 274 3.3E-113 T 25-04-2017 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 A4U88_RS12385 ce70692febabf6b36097456e1124c838 304 SUPERFAMILY SSF52540 80 269 1.06E-30 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12385 ce70692febabf6b36097456e1124c838 304 PIRSF PIRSF028756 16 304 1.6E-133 T 25-04-2017 IPR016898 Polyphosphate kinase 2 A4U88_RS10755 f07def72e51ddc6fc8a7c83a521759c7 383 SUPERFAMILY SSF53335 117 370 6.53E-77 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS10755 f07def72e51ddc6fc8a7c83a521759c7 383 Gene3D G3DSA:3.40.50.150 117 371 8.6E-95 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS10755 f07def72e51ddc6fc8a7c83a521759c7 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 8.0E-102 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS10755 f07def72e51ddc6fc8a7c83a521759c7 383 PIRSF PIRSF003085 6 379 1.6E-124 T 25-04-2017 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 A4U88_RS08370 77286b71f45613ea493d6b6ed163fd9a 60 Gene3D G3DSA:2.20.25.10 8 58 6.1E-25 T 25-04-2017 A4U88_RS08370 77286b71f45613ea493d6b6ed163fd9a 60 Pfam PF03966 Trm112p-like protein 2 41 4.2E-10 T 25-04-2017 IPR005651 Uncharacterised protein family UPF0434/Trm112 A4U88_RS08370 77286b71f45613ea493d6b6ed163fd9a 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.502 T 25-04-2017 IPR005651 Uncharacterised protein family UPF0434/Trm112 A4U88_RS08370 77286b71f45613ea493d6b6ed163fd9a 60 SUPERFAMILY SSF158997 1 54 1.96E-20 T 25-04-2017 A4U88_RS14055 e86cda04c761c67224270e08594b6df8 225 SUPERFAMILY SSF103501 1 224 3.66E-73 T 25-04-2017 IPR023234 NarG-like domain A4U88_RS14055 e86cda04c761c67224270e08594b6df8 225 Pfam PF02665 Nitrate reductase gamma subunit 5 224 1.2E-82 T 25-04-2017 IPR023234 NarG-like domain A4U88_RS14055 e86cda04c761c67224270e08594b6df8 225 Gene3D G3DSA:1.20.950.20 2 216 1.2E-72 T 25-04-2017 A4U88_RS14055 e86cda04c761c67224270e08594b6df8 225 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 1 225 3.7E-117 T 25-04-2017 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 A4U88_RS10800 e52a947fd8b5b70cfd6d575dcd8a72d2 367 SUPERFAMILY SSF51395 1 365 2.34E-125 T 25-04-2017 A4U88_RS10800 e52a947fd8b5b70cfd6d575dcd8a72d2 367 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 344 3.7E-91 T 25-04-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 A4U88_RS10800 e52a947fd8b5b70cfd6d575dcd8a72d2 367 Gene3D G3DSA:3.20.20.70 3 364 2.1E-137 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 Gene3D G3DSA:3.40.640.10 57 269 1.1E-82 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 Gene3D G3DSA:3.90.1150.10 270 381 5.3E-33 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 382 51.679 T 25-04-2017 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 25-04-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 Pfam PF00155 Aminotransferase class I and II 42 378 1.3E-59 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 379 1.9E-139 T 25-04-2017 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 A4U88_RS06265 fee0a785e53ab048c78baa9868d34ebb 383 SUPERFAMILY SSF53383 4 381 2.96E-107 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 Gene3D G3DSA:3.40.190.10 93 185 3.8E-22 T 25-04-2017 A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 Pfam PF03466 LysR substrate binding domain 93 293 8.9E-36 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 SUPERFAMILY SSF53850 94 295 3.31E-35 T 25-04-2017 A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.4E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.4E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.4E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 SUPERFAMILY SSF46785 5 114 9.8E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 Gene3D G3DSA:1.10.10.10 5 88 2.2E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 Gene3D G3DSA:3.40.190.10 186 269 3.3E-9 T 25-04-2017 A4U88_RS20725 2380fd3fdb983073567eb5cb4d8a0d2d 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 1.2E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23980 ab4e843c2ef1d9028cb419cd1d380117 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 2.0E-38 T 25-04-2017 IPR009383 Protein of unknown function DUF1040 A4U88_RS23980 ab4e843c2ef1d9028cb419cd1d380117 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 1.1E-45 T 25-04-2017 IPR009383 Protein of unknown function DUF1040 A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 SMART SM00448 1 112 3.2E-37 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.0E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 SUPERFAMILY SSF52172 1 172 9.08E-37 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 SMART SM00862 145 216 5.3E-23 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 Gene3D G3DSA:1.10.10.10 126 216 2.8E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 Pfam PF00072 Response regulator receiver domain 3 112 1.4E-23 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS20395 96981ca7576dc39d8e1e8c88040ca366 220 Gene3D G3DSA:3.40.50.2300 1 120 3.6E-36 T 25-04-2017 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 SUPERFAMILY SSF52490 12 207 3.66E-69 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 Pfam PF12327 FtsZ family, C-terminal domain 221 315 8.6E-37 T 25-04-2017 IPR024757 Cell division protein FtsZ, C-terminal A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 344 38.017 T 25-04-2017 IPR000158 Cell division protein FtsZ GO:0005525 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 Gene3D G3DSA:3.30.1330.20 214 321 8.7E-47 T 25-04-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 SUPERFAMILY SSF55307 203 319 2.98E-42 T 25-04-2017 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.4E-51 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.4E-51 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.4E-51 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.4E-51 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 SMART SM00864 12 204 2.2E-111 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 25-04-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 8.7E-42 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 SMART SM00865 206 324 8.3E-56 T 25-04-2017 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 336 1.9E-141 T 25-04-2017 IPR000158 Cell division protein FtsZ GO:0005525 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 Gene3D G3DSA:3.40.50.1440 13 213 3.4E-93 T 25-04-2017 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 A4U88_RS03390 ec632d565397fedfa0a2a1c46df80c98 384 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 25-04-2017 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.616 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 148 3.0E-80 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 SUPERFAMILY SSF63411 4 162 8.33E-67 T 25-04-2017 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 PIRSF PIRSF006160 1 162 1.6E-65 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 151 7.8E-62 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 4.9E-49 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 4.9E-49 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 4.9E-49 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 4.9E-49 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 4.9E-49 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS03810 feef3505b467a8493d83282fb2388bf9 171 Gene3D G3DSA:3.30.1360.80 1 170 3.5E-75 T 25-04-2017 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 PIRSF PIRSF036388 2 431 2.5E-237 T 25-04-2017 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 1.3E-46 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 1.3E-46 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 1.3E-46 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 1.3E-46 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 1.3E-46 T 25-04-2017 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 Hamap MF_00504 Peptidase B [pepB]. 4 428 68.105 T 25-04-2017 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 SUPERFAMILY SSF53187 108 428 1.76E-105 T 25-04-2017 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 110 422 9.1E-103 T 25-04-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 Gene3D G3DSA:3.40.630.10 97 429 2.8E-120 T 25-04-2017 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 Pfam PF12404 Peptidase 6 82 9.9E-37 T 25-04-2017 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 A4U88_RS18415 46d474275babd76998c0416a8ec03786 431 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 25-04-2017 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 A4U88_RS12345 dafcd0f05c53a70bb3964ed77ba19aac 237 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS12345 dafcd0f05c53a70bb3964ed77ba19aac 237 SUPERFAMILY SSF52540 5 234 1.25E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12345 dafcd0f05c53a70bb3964ed77ba19aac 237 SMART SM00382 30 231 4.2E-5 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS12345 dafcd0f05c53a70bb3964ed77ba19aac 237 Pfam PF00005 ABC transporter 22 165 4.1E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS12345 dafcd0f05c53a70bb3964ed77ba19aac 237 Gene3D G3DSA:3.40.50.300 2 232 2.2E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12345 dafcd0f05c53a70bb3964ed77ba19aac 237 PIRSF PIRSF039137 1 237 2.2E-102 T 25-04-2017 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 SUPERFAMILY SSF52540 75 145 3.09E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 SUPERFAMILY SSF52540 246 368 3.09E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 SMART SM00763 19 380 8.3E-217 T 25-04-2017 IPR013153 PrkA AAA domain A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 Pfam PF08298 PrkA AAA domain 20 380 9.0E-177 T 25-04-2017 IPR013153 PrkA AAA domain A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 PIRSF PIRSF000549 1 644 2.3E-289 T 25-04-2017 IPR016230 Serine-protein kinase, PrkA GO:0004672 A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 1.1E-74 T 25-04-2017 IPR010650 PrkA C-terminal domain A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 Gene3D G3DSA:3.40.50.300 243 329 5.1E-9 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13365 589ae397a981f2e8978d6b986848d34b 644 Gene3D G3DSA:3.40.50.300 75 158 5.1E-9 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 Gene3D G3DSA:3.40.50.300 5 258 2.0E-78 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 234 320 1.2E-28 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 SUPERFAMILY SSF52540 6 256 1.05E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 300 3.9E-21 T 25-04-2017 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 SMART SM00382 42 242 2.2E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13960 00afbda3ca6dcca636f3bbdf68b1ec19 322 Pfam PF00005 ABC transporter 34 184 3.5E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS23585 6154d55251c88bc18a34ec5b83cceee3 394 SUPERFAMILY SSF103473 7 389 3.53E-56 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS23585 6154d55251c88bc18a34ec5b83cceee3 394 Gene3D G3DSA:1.20.1250.20 241 383 1.5E-4 T 25-04-2017 A4U88_RS23585 6154d55251c88bc18a34ec5b83cceee3 394 Pfam PF07690 Major Facilitator Superfamily 14 350 1.2E-35 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS23585 6154d55251c88bc18a34ec5b83cceee3 394 Gene3D G3DSA:1.20.1250.20 10 193 6.5E-28 T 25-04-2017 A4U88_RS02855 7f91b71fe5ed76f4bd222a649f9667d6 53 PIRSF PIRSF036466 1 53 2.2E-19 T 25-04-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 A4U88_RS02855 7f91b71fe5ed76f4bd222a649f9667d6 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 48 17.609 T 25-04-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 A4U88_RS02855 7f91b71fe5ed76f4bd222a649f9667d6 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 9.8E-13 T 25-04-2017 IPR009760 Protein of unknown function DUF1328 GO:0005886 A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 2.2E-30 T 25-04-2017 IPR013078 Histidine phosphatase superfamily, clade-1 A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 25-04-2017 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 1.4E-127 T 25-04-2017 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 SMART SM00855 5 191 1.9E-28 T 25-04-2017 IPR013078 Histidine phosphatase superfamily, clade-1 A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 SUPERFAMILY SSF53254 4 247 8.18E-78 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 Gene3D G3DSA:3.40.50.1240 2 250 2.7E-98 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS06130 7763dcd6158143b81646f528b0a06718 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.725 T 25-04-2017 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 PIRSF PIRSF000103 1 291 2.1E-74 T 25-04-2017 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 SUPERFAMILY SSF48179 164 290 3.17E-23 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 283 6.7E-15 T 25-04-2017 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 SUPERFAMILY SSF51735 1 159 2.1E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 Gene3D G3DSA:3.40.50.720 1 159 1.1E-45 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 Gene3D G3DSA:1.10.1040.10 164 290 6.3E-25 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS06780 7d19b711d7c1a9d30f1714304cc5fa85 291 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 158 3.1E-37 T 25-04-2017 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 A4U88_RS17070 ab74753ad2e0916f15e8c43d4766b9c4 322 PIRSF PIRSF017082 1 322 3.7E-79 T 25-04-2017 IPR005064 Bordetella uptake gene GO:0030288 A4U88_RS17070 ab74753ad2e0916f15e8c43d4766b9c4 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 61 308 3.5E-19 T 25-04-2017 IPR005064 Bordetella uptake gene GO:0030288 A4U88_RS17070 ab74753ad2e0916f15e8c43d4766b9c4 322 Gene3D G3DSA:3.40.190.10 120 222 1.5E-4 T 25-04-2017 A4U88_RS17070 ab74753ad2e0916f15e8c43d4766b9c4 322 SUPERFAMILY SSF53850 59 238 5.74E-10 T 25-04-2017 A4U88_RS15285 47098320ba24d8fee9398f25315ecb70 257 Gene3D G3DSA:3.90.226.10 3 198 6.8E-64 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS15285 47098320ba24d8fee9398f25315ecb70 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 3.1E-69 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS15285 47098320ba24d8fee9398f25315ecb70 257 SUPERFAMILY SSF52096 1 257 3.78E-82 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS15285 47098320ba24d8fee9398f25315ecb70 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 25-04-2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 A4U88_RS15285 47098320ba24d8fee9398f25315ecb70 257 Gene3D G3DSA:1.10.12.10 199 257 3.2E-22 T 25-04-2017 IPR014748 Crontonase, C-terminal A4U88_RS22865 b8dc6c784419efed9ea88cf036255c81 175 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 9 169 4.6E-64 T 25-04-2017 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 A4U88_RS22865 b8dc6c784419efed9ea88cf036255c81 175 SUPERFAMILY SSF52540 1 170 3.69E-25 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22865 b8dc6c784419efed9ea88cf036255c81 175 Gene3D G3DSA:3.40.50.300 3 171 9.5E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22865 b8dc6c784419efed9ea88cf036255c81 175 Pfam PF13671 AAA domain 8 125 1.7E-8 T 25-04-2017 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 SUPERFAMILY SSF51905 6 343 4.42E-50 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 SUPERFAMILY SSF51905 523 584 4.42E-50 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 SUPERFAMILY SSF54373 432 504 4.71E-8 T 25-04-2017 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 Pfam PF00732 GMC oxidoreductase 202 347 1.2E-8 T 25-04-2017 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 Pfam PF05199 GMC oxidoreductase 448 573 1.9E-21 T 25-04-2017 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 Gene3D G3DSA:3.50.50.60 473 582 6.5E-57 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 Gene3D G3DSA:3.50.50.60 6 158 6.5E-57 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10450 23385b5cfd4da49ef56a257c6446cbb9 593 Gene3D G3DSA:3.50.50.60 245 351 6.5E-57 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS13185 017e60255c3913171bfbcc3c83fe08a6 306 SUPERFAMILY SSF161098 88 291 8.18E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13185 017e60255c3913171bfbcc3c83fe08a6 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 8.2E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13185 017e60255c3913171bfbcc3c83fe08a6 306 Gene3D G3DSA:1.10.3720.10 88 302 1.4E-20 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11965 ac6c3567a108925b414bc68f796338f7 66 SUPERFAMILY SSF53850 4 64 2.17E-10 T 25-04-2017 A4U88_RS11965 ac6c3567a108925b414bc68f796338f7 66 Gene3D G3DSA:3.40.190.10 10 65 2.4E-8 T 25-04-2017 A4U88_RS11965 ac6c3567a108925b414bc68f796338f7 66 Pfam PF03466 LysR substrate binding domain 4 64 4.9E-7 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS13545 85dd302f892e77aff87fffc83dfbc16f 290 Pfam PF01380 SIS domain 124 252 1.6E-25 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS13545 85dd302f892e77aff87fffc83dfbc16f 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 1.7E-29 T 25-04-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 A4U88_RS13545 85dd302f892e77aff87fffc83dfbc16f 290 SUPERFAMILY SSF53697 94 277 9.76E-43 T 25-04-2017 A4U88_RS13545 85dd302f892e77aff87fffc83dfbc16f 290 Gene3D G3DSA:3.40.50.10490 96 270 1.7E-39 T 25-04-2017 A4U88_RS13545 85dd302f892e77aff87fffc83dfbc16f 290 Gene3D G3DSA:1.10.10.10 1 80 1.6E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13545 85dd302f892e77aff87fffc83dfbc16f 290 SUPERFAMILY SSF46689 1 80 1.68E-21 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS03625 00d63fc261a5fb4fa125e635e9173595 108 Pfam PF12084 Protein of unknown function (DUF3561) 1 107 4.0E-48 T 25-04-2017 IPR022721 Protein of unknown function DUF3561 A4U88_RS03625 00d63fc261a5fb4fa125e635e9173595 108 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 1 108 3.0E-28 T 25-04-2017 IPR022721 Protein of unknown function DUF3561 A4U88_RS09125 806a8a64e9587ef0361b3bdf0a72b2b0 38 Pfam PF10968 Protein of unknown function (DUF2770) 2 36 3.9E-18 T 25-04-2017 IPR024494 Protein of unknown function DUF2770 A4U88_RS24060 43f8bdc8ddc20e09f0e9804bd31d99db 523 Pfam PF12592 Protein of unknown function (DUF3763) 464 516 9.4E-19 T 25-04-2017 IPR022547 ATPase, RavA, C-terminal GO:0016820 A4U88_RS24060 43f8bdc8ddc20e09f0e9804bd31d99db 523 SUPERFAMILY SSF52540 33 298 4.57E-18 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS24060 43f8bdc8ddc20e09f0e9804bd31d99db 523 Pfam PF07728 AAA domain (dynein-related subfamily) 62 192 2.1E-25 T 25-04-2017 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 A4U88_RS24060 43f8bdc8ddc20e09f0e9804bd31d99db 523 SMART SM00382 59 208 9.6E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS24060 43f8bdc8ddc20e09f0e9804bd31d99db 523 Gene3D G3DSA:3.40.50.300 46 204 2.8E-16 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06980 b392f2f7a57226f77c5283b37f67b569 158 Pfam PF02566 OsmC-like protein 51 148 3.3E-14 T 25-04-2017 IPR003718 OsmC/Ohr family A4U88_RS06980 b392f2f7a57226f77c5283b37f67b569 158 SUPERFAMILY SSF82784 4 151 6.28E-44 T 25-04-2017 IPR003718 OsmC/Ohr family A4U88_RS06980 b392f2f7a57226f77c5283b37f67b569 158 Gene3D G3DSA:3.30.300.20 3 152 7.1E-62 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS07985 3521ea76273e52b0dd2c389f0d79a68d 455 SUPERFAMILY SSF143548 16 158 4.18E-45 T 25-04-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 A4U88_RS07985 3521ea76273e52b0dd2c389f0d79a68d 455 Pfam PF03313 Serine dehydratase alpha chain 184 448 2.8E-95 T 25-04-2017 IPR005130 Serine dehydratase-like, alpha subunit A4U88_RS07985 3521ea76273e52b0dd2c389f0d79a68d 455 Gene3D G3DSA:3.30.1330.90 10 158 1.1E-53 T 25-04-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 A4U88_RS07985 3521ea76273e52b0dd2c389f0d79a68d 455 Pfam PF03315 Serine dehydratase beta chain 3 155 1.3E-55 T 25-04-2017 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 A4U88_RS07985 3521ea76273e52b0dd2c389f0d79a68d 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 2.9E-220 T 25-04-2017 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 A4U88_RS07640 51c8e72c5d889b8558120b8ed91c0266 193 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 190 34.449 T 25-04-2017 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 A4U88_RS07640 51c8e72c5d889b8558120b8ed91c0266 193 Gene3D G3DSA:2.70.40.10 1 192 8.2E-61 T 25-04-2017 IPR029054 dUTPase-like A4U88_RS07640 51c8e72c5d889b8558120b8ed91c0266 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 3.2E-69 T 25-04-2017 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187 A4U88_RS07640 51c8e72c5d889b8558120b8ed91c0266 193 SUPERFAMILY SSF51283 1 193 1.3E-60 T 25-04-2017 IPR029054 dUTPase-like A4U88_RS07640 51c8e72c5d889b8558120b8ed91c0266 193 Pfam PF00692 dUTPase 79 185 1.5E-8 T 25-04-2017 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 A4U88_RS06685 0db4d8fa80ad06539ddc46c52fb19f19 301 SUPERFAMILY SSF103481 210 289 3.14E-8 T 25-04-2017 A4U88_RS06685 0db4d8fa80ad06539ddc46c52fb19f19 301 Pfam PF00892 EamA-like transporter family 146 288 4.6E-15 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS06685 0db4d8fa80ad06539ddc46c52fb19f19 301 Pfam PF00892 EamA-like transporter family 7 130 7.4E-16 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS06685 0db4d8fa80ad06539ddc46c52fb19f19 301 SUPERFAMILY SSF103481 40 135 1.7E-12 T 25-04-2017 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 81 317 1.4E-78 T 25-04-2017 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Pfam PF08279 HTH domain 9 58 3.8E-11 T 25-04-2017 IPR013196 Helix-turn-helix, type 11 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Gene3D G3DSA:1.10.10.10 1 61 3.8E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Pfam PF03099 Biotin/lipoate A/B protein ligase family 84 208 1.5E-25 T 25-04-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 SUPERFAMILY SSF55681 72 268 4.19E-60 T 25-04-2017 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Gene3D G3DSA:2.30.30.100 271 319 4.3E-24 T 25-04-2017 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 33.558 T 25-04-2017 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Pfam PF02237 Biotin protein ligase C terminal domain 272 317 2.2E-12 T 25-04-2017 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 SUPERFAMILY SSF50037 271 317 1.83E-11 T 25-04-2017 IPR008988 Transcriptional repressor, C-terminal A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 6 73 3.0E-26 T 25-04-2017 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 Gene3D G3DSA:3.30.930.10 75 268 7.0E-61 T 25-04-2017 A4U88_RS01095 859fdd04e65487bf70cbac46a2cfac00 320 SUPERFAMILY SSF46785 3 60 5.72E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22915 3d570ad1af3e1e6dfd8adfcba8f82210 643 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 7 332 1.7E-125 T 25-04-2017 IPR030830 5-dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 A4U88_RS22915 3d570ad1af3e1e6dfd8adfcba8f82210 643 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 327 635 3.2E-143 T 25-04-2017 IPR018659 Protein of unknown function DUF2090 A4U88_RS22915 3d570ad1af3e1e6dfd8adfcba8f82210 643 SUPERFAMILY SSF53613 7 332 6.39E-72 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS22915 3d570ad1af3e1e6dfd8adfcba8f82210 643 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 276 289 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS22915 3d570ad1af3e1e6dfd8adfcba8f82210 643 Gene3D G3DSA:3.40.1190.20 3 336 1.8E-85 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS22915 3d570ad1af3e1e6dfd8adfcba8f82210 643 Pfam PF00294 pfkB family carbohydrate kinase 9 324 1.5E-45 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS18420 170ace544eb5355d1fffc9aaa3a52d65 66 SUPERFAMILY SSF140319 3 64 5.62E-27 T 25-04-2017 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 A4U88_RS18420 170ace544eb5355d1fffc9aaa3a52d65 66 PIRSF PIRSF039003 3 66 2.4E-33 T 25-04-2017 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 A4U88_RS18420 170ace544eb5355d1fffc9aaa3a52d65 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 4.8E-33 T 25-04-2017 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 A4U88_RS18420 170ace544eb5355d1fffc9aaa3a52d65 66 Gene3D G3DSA:1.10.10.600 1 66 4.9E-35 T 25-04-2017 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 A4U88_RS18420 170ace544eb5355d1fffc9aaa3a52d65 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 2.9E-32 T 25-04-2017 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 A4U88_RS13235 98402a4adb714f005074c1f830c49da4 337 Gene3D G3DSA:3.40.50.2300 7 125 3.1E-31 T 25-04-2017 A4U88_RS13235 98402a4adb714f005074c1f830c49da4 337 SMART SM00448 8 120 2.2E-30 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS13235 98402a4adb714f005074c1f830c49da4 337 SUPERFAMILY SSF52172 7 133 8.25E-33 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS13235 98402a4adb714f005074c1f830c49da4 337 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 55.644 T 25-04-2017 IPR028616 Regulator of RpoS A4U88_RS13235 98402a4adb714f005074c1f830c49da4 337 Pfam PF00072 Response regulator receiver domain 10 120 5.2E-26 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS17770 baf8171517c54a1186315046cc072d43 218 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 13 206 1.8E-46 T 25-04-2017 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 A4U88_RS17770 baf8171517c54a1186315046cc072d43 218 SMART SM01120 34 207 2.6E-62 T 25-04-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 A4U88_RS17770 baf8171517c54a1186315046cc072d43 218 SUPERFAMILY SSF101473 7 207 9.29E-49 T 25-04-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 A4U88_RS17770 baf8171517c54a1186315046cc072d43 218 Pfam PF02734 DAK2 domain 34 206 9.8E-50 T 25-04-2017 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 A4U88_RS00745 014bb3ee8fb6b309e3fccab0e4f6704d 359 Gene3D G3DSA:3.20.20.190 28 353 2.7E-92 T 25-04-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 A4U88_RS00745 014bb3ee8fb6b309e3fccab0e4f6704d 359 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 347 7.2E-74 T 25-04-2017 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 A4U88_RS00745 014bb3ee8fb6b309e3fccab0e4f6704d 359 SUPERFAMILY SSF51695 28 352 8.11E-91 T 25-04-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 A4U88_RS22500 dbf14f3df1edbb7e10fa3469eed09930 135 Gene3D G3DSA:2.20.25.10 1 34 1.1E-19 T 25-04-2017 A4U88_RS22500 dbf14f3df1edbb7e10fa3469eed09930 135 Gene3D G3DSA:3.30.300.20 35 132 3.6E-43 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS22500 dbf14f3df1edbb7e10fa3469eed09930 135 SUPERFAMILY SSF82784 1 131 2.09E-42 T 25-04-2017 IPR003718 OsmC/Ohr family A4U88_RS22500 dbf14f3df1edbb7e10fa3469eed09930 135 Pfam PF02566 OsmC-like protein 30 127 1.2E-18 T 25-04-2017 IPR003718 OsmC/Ohr family A4U88_RS05030 a09abb3d5f9f977a773095f93d5fa590 287 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 4.5E-105 T 25-04-2017 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-75105 A4U88_RS05030 a09abb3d5f9f977a773095f93d5fa590 287 SUPERFAMILY SSF54637 5 114 9.39E-43 T 25-04-2017 IPR029069 HotDog domain A4U88_RS05030 a09abb3d5f9f977a773095f93d5fa590 287 Gene3D G3DSA:3.10.129.10 5 116 2.4E-50 T 25-04-2017 IPR029069 HotDog domain A4U88_RS05030 a09abb3d5f9f977a773095f93d5fa590 287 SUPERFAMILY SSF54637 116 283 7.03E-63 T 25-04-2017 IPR029069 HotDog domain A4U88_RS05030 a09abb3d5f9f977a773095f93d5fa590 287 Gene3D G3DSA:3.10.129.10 124 285 1.1E-60 T 25-04-2017 IPR029069 HotDog domain A4U88_RS05030 a09abb3d5f9f977a773095f93d5fa590 287 Pfam PF13622 Thioesterase-like superfamily 32 282 1.2E-60 T 25-04-2017 A4U88_RS10140 d20310904f434eff1568fd94177a2d0f 456 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 2 453 1.3E-217 T 25-04-2017 IPR010252 Formiminoglutamate deiminase A4U88_RS10140 d20310904f434eff1568fd94177a2d0f 456 Gene3D G3DSA:2.30.40.10 382 435 3.2E-4 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS10140 d20310904f434eff1568fd94177a2d0f 456 Gene3D G3DSA:3.20.20.140 54 381 1.1E-75 T 25-04-2017 A4U88_RS10140 d20310904f434eff1568fd94177a2d0f 456 Pfam PF01979 Amidohydrolase family 49 429 1.9E-30 T 25-04-2017 IPR006680 Amidohydrolase-related GO:0016787 A4U88_RS10140 d20310904f434eff1568fd94177a2d0f 456 SUPERFAMILY SSF51338 360 434 1.25E-8 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS10140 d20310904f434eff1568fd94177a2d0f 456 SUPERFAMILY SSF51556 50 374 2.04E-70 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 Gene3D G3DSA:2.40.160.10 22 365 2.1E-103 T 25-04-2017 IPR023614 Porin domain A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 SUPERFAMILY SSF56935 22 365 4.48E-79 T 25-04-2017 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 Pfam PF00267 Gram-negative porin 27 365 9.5E-136 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 230 242 6.3E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 320 337 6.3E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 6.3E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 6.3E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 6.3E-15 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 3.8E-66 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 3.8E-66 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 236 253 3.8E-66 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 3.8E-66 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 3.8E-66 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS07065 a1bf741cd1643456b0b6922c00c05bc3 365 PRINTS PR00183 E.coli/Salmonella-type porin signature 276 295 3.8E-66 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 Gene3D G3DSA:3.40.190.10 175 266 1.2E-21 T 25-04-2017 A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 SUPERFAMILY SSF53850 93 302 5.25E-46 T 25-04-2017 A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 SUPERFAMILY SSF46785 9 114 4.3E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 Pfam PF03466 LysR substrate binding domain 92 296 3.8E-43 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.8E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 Gene3D G3DSA:1.10.10.10 9 84 1.5E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19695 ab6f9a0cb2378131c2ff6c404a65a758 306 Gene3D G3DSA:3.40.190.10 93 174 4.3E-7 T 25-04-2017 A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 Gene3D G3DSA:3.30.1330.30 118 195 7.2E-9 T 25-04-2017 IPR029064 50S ribosomal protein L30e-like A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 Pfam PF00588 SpoU rRNA Methylase family 216 353 8.1E-32 T 25-04-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 SUPERFAMILY SSF75217 208 361 1.18E-39 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 SUPERFAMILY SSF55315 120 196 3.88E-10 T 25-04-2017 IPR029064 50S ribosomal protein L30e-like A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 Gene3D G3DSA:3.40.1280.10 208 360 2.5E-39 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 PIRSF PIRSF006280 1 362 4.5E-168 T 25-04-2017 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 127 199 2.1E-12 T 25-04-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 A4U88_RS19040 0e60a6384def34675f4f4cce39929c4e 362 SMART SM00967 126 201 1.1E-9 T 25-04-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 Gene3D G3DSA:3.40.50.2300 174 342 4.2E-40 T 25-04-2017 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 SUPERFAMILY SSF53822 60 342 6.87E-53 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 SUPERFAMILY SSF47413 1 53 2.09E-12 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 Gene3D G3DSA:3.40.50.2300 59 173 5.9E-29 T 25-04-2017 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 Pfam PF13377 Periplasmic binding protein-like domain 174 341 2.4E-30 T 25-04-2017 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 SMART SM00354 1 71 2.4E-18 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 Gene3D G3DSA:1.10.260.40 1 53 1.9E-18 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS14775 63b9c5b5c1a64e24b33485b5cc2d7394 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 2.0E-16 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 SMART SM00387 27 184 9.4E-12 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 620 32.832 T 25-04-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 Pfam PF00183 Hsp90 protein 212 620 4.1E-126 T 25-04-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 120 142 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 75 92 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 26 48 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 93 110 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 5 25 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 190 208 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PRINTS PR00775 90kDa heat shock protein signature 172 189 8.5E-64 T 25-04-2017 IPR020575 Heat shock protein Hsp90, N-terminal A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 SUPERFAMILY SSF55874 4 213 4.32E-66 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 SUPERFAMILY SSF54211 228 483 1.29E-101 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 PIRSF PIRSF002583 1 621 1.4E-217 T 25-04-2017 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 182 6.6E-15 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 Gene3D G3DSA:3.30.565.10 4 214 1.1E-82 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 SUPERFAMILY SSF110942 507 619 4.84E-35 T 25-04-2017 A4U88_RS05185 3d26363d7475d9028b7ce82c64e18478 621 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 25 34 - T 25-04-2017 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Gene3D G3DSA:1.20.1090.10 644 864 7.0E-70 T 25-04-2017 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Gene3D G3DSA:3.40.50.1970 450 643 4.2E-64 T 25-04-2017 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 25-04-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Gene3D G3DSA:3.40.605.10 4 225 5.8E-25 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 SUPERFAMILY SSF53720 6 453 1.83E-84 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 PIRSF PIRSF000111 1 866 0.0 T 25-04-2017 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00592+1.1.1.1|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00650+1.2.1.10|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7085|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7180|MetaCyc: PWY-7396 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 4.4E-116 T 25-04-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 SUPERFAMILY SSF56796 451 864 3.14E-120 T 25-04-2017 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Gene3D G3DSA:3.40.309.10 226 273 1.3E-29 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Gene3D G3DSA:3.40.309.10 309 404 1.3E-29 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 25-04-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 A4U88_RS13205 165994a82961b87aa6125d17fd839b69 890 Pfam PF00171 Aldehyde dehydrogenase family 5 399 2.2E-27 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS23845 fd851826d7e6ca6f86950d56a810a451 144 Pfam PF12098 Protein of unknown function (DUF3574) 43 144 2.1E-40 T 25-04-2017 IPR021957 Protein of unknown function DUF3574 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 SUPERFAMILY SSF56935 22 376 1.53E-75 T 25-04-2017 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 Gene3D G3DSA:2.40.160.10 22 376 5.0E-94 T 25-04-2017 IPR023614 Porin domain A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 1.9E-67 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 1.9E-67 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 278 297 1.9E-67 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 244 261 1.9E-67 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 1.9E-67 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 1.9E-67 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 3.1E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 328 345 3.1E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 3.1E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 3.1E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 238 250 3.1E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 Pfam PF00267 Gram-negative porin 27 376 1.3E-129 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS16645 d0bb6da657513167b671243d0676fb86 376 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 328 344 - T 25-04-2017 IPR013793 Porin, Gram-negative type, conserved site A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 25-04-2017 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 SUPERFAMILY SSF52833 4 181 1.12E-53 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 183 52.398 T 25-04-2017 IPR033674 Thioredoxin/glutathione peroxidase BtuE A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 Pfam PF00255 Glutathione peroxidase 10 111 1.7E-37 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.4E-18 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 PRINTS PR01011 Glutathione peroxidase family signature 143 152 2.4E-18 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.4E-18 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 Gene3D G3DSA:3.40.30.10 7 182 7.4E-64 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10525 7761f6eecf6c2dfd923c4b2d487bdf44 183 PIRSF PIRSF000303 1 183 2.4E-60 T 25-04-2017 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 A4U88_RS03660 825255a43cedc1d80e51dc89ec265885 348 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 4 341 29.041 T 25-04-2017 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03660 825255a43cedc1d80e51dc89ec265885 348 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 4 341 7.0E-79 T 25-04-2017 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03660 825255a43cedc1d80e51dc89ec265885 348 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 189 336 8.7E-18 T 25-04-2017 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03660 825255a43cedc1d80e51dc89ec265885 348 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 11 166 1.5E-40 T 25-04-2017 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03660 825255a43cedc1d80e51dc89ec265885 348 SUPERFAMILY SSF55120 3 339 1.73E-105 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03660 825255a43cedc1d80e51dc89ec265885 348 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 76 89 - T 25-04-2017 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 A4U88_RS06525 4140c6f4ef754742370852bd13e67125 280 SUPERFAMILY SSF54001 41 278 1.57E-77 T 25-04-2017 A4U88_RS06525 4140c6f4ef754742370852bd13e67125 280 Gene3D G3DSA:1.10.3670.10 65 192 1.7E-41 T 25-04-2017 A4U88_RS06525 4140c6f4ef754742370852bd13e67125 280 Gene3D G3DSA:2.30.260.10 193 278 3.0E-31 T 25-04-2017 IPR023360 Putative xylanase-like C-terminal A4U88_RS06525 4140c6f4ef754742370852bd13e67125 280 Pfam PF07313 Protein of unknown function (DUF1460) 73 270 2.4E-76 T 25-04-2017 IPR010846 Protein of unknown function DUF1460 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 375 399 - T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 34 542 3.1E-172 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 Pfam PF01019 Gamma-glutamyltranspeptidase 49 576 2.2E-181 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 SUPERFAMILY SSF56235 26 587 6.75E-185 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 455 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 147 166 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 246 262 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 276 295 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 375 393 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 399 417 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 464 481 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 147 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04770 8869f458da73874f9f48c08f1b2aff4d 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 56 81 2.4E-78 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS02625 6c26adffb7f39617928da61783009b7f 395 SUPERFAMILY SSF103473 21 389 9.68E-29 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS02625 6c26adffb7f39617928da61783009b7f 395 Gene3D G3DSA:1.20.1250.20 21 188 9.6E-12 T 25-04-2017 A4U88_RS02625 6c26adffb7f39617928da61783009b7f 395 Gene3D G3DSA:1.20.1250.20 215 388 5.7E-8 T 25-04-2017 A4U88_RS04000 a2aadc5ad850d0dd2860e1aa86dd5da1 292 Pfam PF08021 Siderophore-interacting FAD-binding domain 13 127 3.1E-37 T 25-04-2017 IPR013113 FAD-binding 9, siderophore-interacting A4U88_RS04000 a2aadc5ad850d0dd2860e1aa86dd5da1 292 Pfam PF04954 Siderophore-interacting protein 145 291 1.7E-31 T 25-04-2017 IPR007037 Siderophore-interacting protein A4U88_RS04000 a2aadc5ad850d0dd2860e1aa86dd5da1 292 Gene3D G3DSA:2.40.30.10 3 126 8.2E-32 T 25-04-2017 A4U88_RS04000 a2aadc5ad850d0dd2860e1aa86dd5da1 292 SUPERFAMILY SSF63380 6 129 6.62E-10 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS04000 a2aadc5ad850d0dd2860e1aa86dd5da1 292 Gene3D G3DSA:3.40.50.80 138 291 1.6E-34 T 25-04-2017 A4U88_RS02620 e0dccc85de402cd9b0690c37ba083e5a 370 SUPERFAMILY SSF52768 2 347 1.53E-101 T 25-04-2017 A4U88_RS02620 e0dccc85de402cd9b0690c37ba083e5a 370 Pfam PF00850 Histone deacetylase domain 41 328 8.4E-76 T 25-04-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 A4U88_RS02620 e0dccc85de402cd9b0690c37ba083e5a 370 PRINTS PR01270 Histone deacetylase superfamily signature 259 269 6.2E-15 T 25-04-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 A4U88_RS02620 e0dccc85de402cd9b0690c37ba083e5a 370 PRINTS PR01270 Histone deacetylase superfamily signature 140 163 6.2E-15 T 25-04-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 A4U88_RS02620 e0dccc85de402cd9b0690c37ba083e5a 370 PRINTS PR01270 Histone deacetylase superfamily signature 174 189 6.2E-15 T 25-04-2017 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 A4U88_RS02620 e0dccc85de402cd9b0690c37ba083e5a 370 Gene3D G3DSA:3.40.800.20 5 350 6.1E-95 T 25-04-2017 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 SUPERFAMILY SSF110997 285 356 6.8E-16 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 Pfam PF03330 Lytic transglycolase 75 163 1.0E-23 T 25-04-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 Gene3D G3DSA:3.30.70.1070 283 356 8.8E-17 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 Gene3D G3DSA:2.40.40.10 114 167 3.9E-5 T 25-04-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 Pfam PF05036 Sporulation related domain 285 357 1.3E-16 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 77 175 5.0E-35 T 25-04-2017 IPR012997 Rare lipoprotein A A4U88_RS05610 af18b60bd0af56217d0b1b0facf69d77 360 SUPERFAMILY SSF50685 77 164 1.94E-7 T 25-04-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 84 2.5E-22 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 58 74 1.1E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 58 1.1E-9 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 SUPERFAMILY SSF64288 72 247 5.81E-43 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 SMART SM00866 105 242 1.8E-35 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 SMART SM00345 25 84 6.8E-21 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 Gene3D G3DSA:1.10.10.10 16 90 8.4E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 SUPERFAMILY SSF46785 17 88 1.04E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 Gene3D G3DSA:3.40.1410.10 102 238 3.6E-50 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 Pfam PF07702 UTRA domain 105 242 2.7E-35 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS10135 2b4bc0cda85074079fd182abaf48a8ec 251 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 20 248 4.6E-104 T 25-04-2017 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 A4U88_RS01365 8293d67202cfccf26e6407bdebe2887a 68 SMART SM00923 5 55 3.0E-18 T 25-04-2017 IPR005153 MbtH-like protein A4U88_RS01365 8293d67202cfccf26e6407bdebe2887a 68 Gene3D G3DSA:3.90.820.10 15 67 4.7E-20 T 25-04-2017 A4U88_RS01365 8293d67202cfccf26e6407bdebe2887a 68 SUPERFAMILY SSF160582 4 67 8.76E-21 T 25-04-2017 A4U88_RS01365 8293d67202cfccf26e6407bdebe2887a 68 Pfam PF03621 MbtH-like protein 5 55 1.7E-19 T 25-04-2017 IPR005153 MbtH-like protein A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 6.3E-42 T 25-04-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 6.3E-42 T 25-04-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 6.3E-42 T 25-04-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 6.3E-42 T 25-04-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 6.3E-42 T 25-04-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 347 3.7E-127 T 25-04-2017 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 SUPERFAMILY SSF160544 251 355 1.7E-41 T 25-04-2017 IPR029025 Type III secretion system substrate exporter, C-terminal A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 354 1.2E-134 T 25-04-2017 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 A4U88_RS14500 c58aa16a406e9ca7170d1405b1647eb7 383 Gene3D G3DSA:3.40.1690.10 218 357 1.5E-65 T 25-04-2017 IPR029025 Type III secretion system substrate exporter, C-terminal A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 PIRSF PIRSF001399 3 149 1.2E-60 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 Pfam PF01220 Dehydroquinase class II 7 142 1.9E-60 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 75.363 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 Gene3D G3DSA:3.40.50.9100 5 147 3.5E-68 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 25-04-2017 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 SUPERFAMILY SSF52304 6 148 6.28E-63 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 149 1.0E-61 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21645 30c3fdf0a2a8c7276b295bc697d7ac8a 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 4.1E-63 T 25-04-2017 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 Pfam PF13533 Biotin-lipoyl like 47 94 1.7E-15 T 25-04-2017 A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 Pfam PF13437 HlyD family secretion protein 156 241 2.6E-9 T 25-04-2017 A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 241 4.8E-32 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 311 55.747 T 25-04-2017 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 Gene3D G3DSA:2.40.50.100 154 186 9.5E-17 T 25-04-2017 A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 Gene3D G3DSA:2.40.50.100 47 80 9.5E-17 T 25-04-2017 A4U88_RS21545 a0f58c27e1a826de5c09bfd99881b17c 311 SUPERFAMILY SSF111369 46 243 3.4E-22 T 25-04-2017 A4U88_RS01305 6e9ea19c45b519628643ebc56154eb7e 550 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 63 467 1.3E-63 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS01305 6e9ea19c45b519628643ebc56154eb7e 550 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 1 550 51.438 T 25-04-2017 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 A4U88_RS01305 6e9ea19c45b519628643ebc56154eb7e 550 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 178 203 - T 25-04-2017 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS01305 6e9ea19c45b519628643ebc56154eb7e 550 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 451 471 - T 25-04-2017 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS01305 6e9ea19c45b519628643ebc56154eb7e 550 Pfam PF00474 Sodium:solute symporter family 63 469 2.8E-128 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS01305 6e9ea19c45b519628643ebc56154eb7e 550 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 5 550 0.0 T 25-04-2017 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 Gene3D G3DSA:1.10.10.10 11 83 8.3E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 Gene3D G3DSA:3.40.640.10 150 364 3.3E-55 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.7E-6 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.7E-6 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 SUPERFAMILY SSF46785 17 85 7.92E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 Pfam PF00155 Aminotransferase class I and II 145 436 2.0E-24 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 SUPERFAMILY SSF53383 78 473 3.02E-88 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 82 1.6E-17 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS18910 8839b3011d52e2d760e75a68123688f5 476 SMART SM00345 23 82 3.0E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 SMART SM00388 266 334 3.7E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 385 488 1.3E-17 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 2.6E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 486 2.6E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 431 2.6E-8 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 Pfam PF00672 HAMP domain 180 254 5.7E-13 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 SUPERFAMILY SSF47384 249 334 1.43E-18 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 SUPERFAMILY SSF55874 324 487 1.31E-37 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 SUPERFAMILY SSF158472 199 256 2.88E-5 T 25-04-2017 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 SMART SM00387 380 489 1.1E-25 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 SMART SM00304 199 258 0.0015 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 Pfam PF00512 His Kinase A (phospho-acceptor) domain 267 334 2.4E-14 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 Gene3D G3DSA:1.10.287.130 259 330 1.1E-17 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS07320 9a12660484c0cc57914f422a5fe8098d 502 Gene3D G3DSA:3.30.565.10 337 486 2.8E-36 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 Pfam PF01632 Ribosomal protein L35 2 40 3.4E-16 T 25-04-2017 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 25-04-2017 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 60 11.677 T 25-04-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 38 8.5E-16 T 25-04-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 SUPERFAMILY SSF143034 2 41 1.57E-14 T 25-04-2017 A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.8E-12 T 25-04-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 A4U88_RS10490 73f2eb4b293dbc1cc45218b9477eae2a 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.8E-12 T 25-04-2017 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 A4U88_RS14245 d74e286a696e7592f3adfe7839bf326d 494 Pfam PF00474 Sodium:solute symporter family 35 437 1.2E-141 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS14245 d74e286a696e7592f3adfe7839bf326d 494 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 25-04-2017 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS14245 d74e286a696e7592f3adfe7839bf326d 494 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 491 3.2E-228 T 25-04-2017 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 A4U88_RS14245 d74e286a696e7592f3adfe7839bf326d 494 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 419 439 - T 25-04-2017 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS14245 d74e286a696e7592f3adfe7839bf326d 494 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 437 9.7E-126 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS20325 4d19696eed28c375e5983774d7b4f3fe 662 Gene3D G3DSA:1.10.3470.10 8 328 1.1E-72 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS20325 4d19696eed28c375e5983774d7b4f3fe 662 SUPERFAMILY SSF81345 352 659 7.45E-67 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS20325 4d19696eed28c375e5983774d7b4f3fe 662 Gene3D G3DSA:1.10.3470.10 348 660 2.4E-76 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS20325 4d19696eed28c375e5983774d7b4f3fe 662 SUPERFAMILY SSF81345 8 326 4.18E-59 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS20325 4d19696eed28c375e5983774d7b4f3fe 662 Pfam PF01032 FecCD transport family 23 324 1.0E-65 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS20325 4d19696eed28c375e5983774d7b4f3fe 662 Pfam PF01032 FecCD transport family 360 659 4.4E-70 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS14950 40c7685a8460ede371ab10f59286cfc9 213 SUPERFAMILY SSF55729 5 177 5.82E-37 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS14950 40c7685a8460ede371ab10f59286cfc9 213 Gene3D G3DSA:3.40.630.30 4 193 6.9E-56 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS14950 40c7685a8460ede371ab10f59286cfc9 213 Pfam PF13302 Acetyltransferase (GNAT) domain 29 153 2.5E-14 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 5.2E-11 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 5.2E-11 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 5.2E-11 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 Gene3D G3DSA:3.20.20.70 7 294 2.1E-89 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 SUPERFAMILY SSF51569 4 293 5.44E-83 T 25-04-2017 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 PIRSF PIRSF001365 4 302 6.2E-77 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 SMART SM01130 7 295 6.1E-89 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS08840 f4eafdd7734d0e752092cde656a0ae68 306 Pfam PF00701 Dihydrodipicolinate synthetase family 9 293 2.0E-60 T 25-04-2017 IPR002220 DapA-like GO:0008152|GO:0016829 A4U88_RS16415 d8e5d1ca835cc7208e3ab87e8d44a483 528 SUPERFAMILY SSF141868 270 522 5.1E-76 T 25-04-2017 IPR001633 EAL domain A4U88_RS16415 d8e5d1ca835cc7208e3ab87e8d44a483 528 Gene3D G3DSA:3.20.20.450 270 517 1.1E-76 T 25-04-2017 IPR001633 EAL domain A4U88_RS16415 d8e5d1ca835cc7208e3ab87e8d44a483 528 SMART SM00052 265 510 1.4E-97 T 25-04-2017 IPR001633 EAL domain A4U88_RS16415 d8e5d1ca835cc7208e3ab87e8d44a483 528 Pfam PF12792 CSS motif domain associated with EAL 49 243 7.8E-35 T 25-04-2017 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain A4U88_RS16415 d8e5d1ca835cc7208e3ab87e8d44a483 528 Pfam PF00563 EAL domain 271 505 1.1E-65 T 25-04-2017 IPR001633 EAL domain A4U88_RS12980 276b8002ea9c57adde31aa4254664ee7 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 5.2E-6 T 25-04-2017 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 A4U88_RS12980 276b8002ea9c57adde31aa4254664ee7 196 PIRSF PIRSF015617 2 196 1.9E-67 T 25-04-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 A4U88_RS12980 276b8002ea9c57adde31aa4254664ee7 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 1.6E-59 T 25-04-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 A4U88_RS12980 276b8002ea9c57adde31aa4254664ee7 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 1.4E-78 T 25-04-2017 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 A4U88_RS12980 276b8002ea9c57adde31aa4254664ee7 196 SUPERFAMILY SSF52540 7 196 9.29E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12980 276b8002ea9c57adde31aa4254664ee7 196 Gene3D G3DSA:3.40.50.300 3 196 5.0E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16285 8ab237da4eeafe417d534345367f6f81 315 Gene3D G3DSA:3.40.50.1980 149 312 2.1E-32 T 25-04-2017 A4U88_RS16285 8ab237da4eeafe417d534345367f6f81 315 SUPERFAMILY SSF53807 29 297 2.86E-58 T 25-04-2017 A4U88_RS16285 8ab237da4eeafe417d534345367f6f81 315 Gene3D G3DSA:3.40.50.1980 33 148 1.5E-25 T 25-04-2017 A4U88_RS16285 8ab237da4eeafe417d534345367f6f81 315 Pfam PF01497 Periplasmic binding protein 52 287 3.0E-26 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS05400 2174d3795fe9b1ec2a601841a9cb00d7 223 Gene3D G3DSA:3.40.50.1110 40 219 4.1E-54 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS05400 2174d3795fe9b1ec2a601841a9cb00d7 223 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 44 201 2.6E-24 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS05400 2174d3795fe9b1ec2a601841a9cb00d7 223 SUPERFAMILY SSF52266 40 217 9.58E-50 T 25-04-2017 IPR013830 SGNH hydrolase-type esterase domain A4U88_RS05400 2174d3795fe9b1ec2a601841a9cb00d7 223 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 41 51 - T 25-04-2017 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 SUPERFAMILY SSF53807 41 313 3.63E-92 T 25-04-2017 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 47 310 8.0E-80 T 25-04-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 44 65 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 248 265 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 225 243 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 88 107 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 270 288 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 199 216 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00691 Adhesin B signature 69 87 4.5E-36 T 25-04-2017 IPR006129 Adhesin B GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 Gene3D G3DSA:3.40.50.1980 39 191 1.1E-53 T 25-04-2017 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00690 Adhesin family signature 252 270 1.2E-43 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00690 Adhesin family signature 88 105 1.2E-43 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00690 Adhesin family signature 199 220 1.2E-43 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00690 Adhesin family signature 44 62 1.2E-43 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00690 Adhesin family signature 278 297 1.2E-43 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 PRINTS PR00690 Adhesin family signature 75 88 1.2E-43 T 25-04-2017 IPR006128 Adhesion lipoprotein GO:0007155 A4U88_RS10430 8ec2a803d0d980993ac2ec5175377dad 314 Gene3D G3DSA:3.40.50.1980 192 312 2.9E-42 T 25-04-2017 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Gene3D G3DSA:1.10.1040.10 632 711 6.6E-16 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 3.3E-26 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 627 685 2.2E-4 T 25-04-2017 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 SUPERFAMILY SSF48179 622 714 4.68E-23 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Gene3D G3DSA:3.40.50.720 304 497 3.5E-60 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 8.7E-60 T 25-04-2017 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 25-04-2017 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 53.246 T 25-04-2017 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 SUPERFAMILY SSF51735 314 495 2.02E-56 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 SUPERFAMILY SSF48179 495 638 1.19E-31 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 25-04-2017 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 SUPERFAMILY SSF52096 2 303 2.88E-71 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 206 9.2E-42 T 25-04-2017 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Gene3D G3DSA:3.90.226.10 6 201 5.3E-61 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Gene3D G3DSA:3.90.226.10 235 296 5.3E-61 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 25-04-2017 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 A4U88_RS01040 67e808ebd22bf7b9c2dc7e5cfb68b278 729 Gene3D G3DSA:1.10.1040.10 498 593 2.0E-21 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS21605 9a8a7a80ce1c8f56bb83e0c3f004b51a 194 Gene3D G3DSA:3.90.950.10 2 185 4.4E-69 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS21605 9a8a7a80ce1c8f56bb83e0c3f004b51a 194 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 31.344 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS21605 9a8a7a80ce1c8f56bb83e0c3f004b51a 194 PIRSF PIRSF006305 1 190 9.4E-51 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS21605 9a8a7a80ce1c8f56bb83e0c3f004b51a 194 SUPERFAMILY SSF52972 2 184 1.37E-59 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS21605 9a8a7a80ce1c8f56bb83e0c3f004b51a 194 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 2.1E-62 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS21605 9a8a7a80ce1c8f56bb83e0c3f004b51a 194 Pfam PF02545 Maf-like protein 4 184 1.9E-57 T 25-04-2017 IPR003697 Maf-like protein GO:0005737 A4U88_RS00385 2e8be0fadcb4ac95512bb36dedf71b85 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 140 1.5E-55 T 25-04-2017 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 A4U88_RS00385 2e8be0fadcb4ac95512bb36dedf71b85 141 Pfam PF02566 OsmC-like protein 44 138 6.2E-16 T 25-04-2017 IPR003718 OsmC/Ohr family A4U88_RS00385 2e8be0fadcb4ac95512bb36dedf71b85 141 Gene3D G3DSA:3.30.300.20 48 140 4.6E-36 T 25-04-2017 IPR015946 K homology domain-like, alpha/beta A4U88_RS00385 2e8be0fadcb4ac95512bb36dedf71b85 141 SUPERFAMILY SSF82784 1 140 3.14E-43 T 25-04-2017 IPR003718 OsmC/Ohr family A4U88_RS00385 2e8be0fadcb4ac95512bb36dedf71b85 141 Gene3D G3DSA:2.20.25.10 1 45 1.2E-24 T 25-04-2017 A4U88_RS07300 0cf5b6a28773f3a4e28d1c1bf9dcb5d4 201 Gene3D G3DSA:1.20.950.20 8 199 1.4E-45 T 25-04-2017 A4U88_RS07300 0cf5b6a28773f3a4e28d1c1bf9dcb5d4 201 SUPERFAMILY SSF81342 5 199 1.88E-37 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS07300 0cf5b6a28773f3a4e28d1c1bf9dcb5d4 201 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 163 185 1.8E-5 T 25-04-2017 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 A4U88_RS07300 0cf5b6a28773f3a4e28d1c1bf9dcb5d4 201 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 12 35 1.8E-5 T 25-04-2017 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 A4U88_RS07300 0cf5b6a28773f3a4e28d1c1bf9dcb5d4 201 Pfam PF01292 Prokaryotic cytochrome b561 10 197 3.8E-22 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS17005 4e564bb3bffa5922e21a6b2041915562 166 Pfam PF02674 Colicin V production protein 4 142 6.2E-37 T 25-04-2017 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 A4U88_RS10940 b29de5e93536b8841af16c520b81aa78 284 Pfam PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase 11 248 7.8E-82 T 25-04-2017 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase GO:0006468|GO:0016773|GO:0019748 A4U88_RS10940 b29de5e93536b8841af16c520b81aa78 284 Gene3D G3DSA:3.90.1200.10 81 237 1.8E-4 T 25-04-2017 A4U88_RS10940 b29de5e93536b8841af16c520b81aa78 284 SUPERFAMILY SSF56112 24 259 7.58E-32 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 Gene3D G3DSA:1.10.10.60 3 57 1.3E-20 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 SMART SM00871 126 288 6.3E-17 T 25-04-2017 IPR010499 Bacterial transcription activator, effector binding A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 4.3E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 4.3E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 Pfam PF06445 GyrI-like small molecule binding domain 127 288 2.6E-22 T 25-04-2017 IPR029442 GyrI-like small molecule binding domain A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 Gene3D G3DSA:1.10.10.60 58 119 4.1E-24 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 SUPERFAMILY SSF55136 123 288 9.24E-54 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 SUPERFAMILY SSF46689 57 107 5.82E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 SUPERFAMILY SSF46689 6 55 7.39E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 Pfam PF12833 Helix-turn-helix domain 27 105 5.2E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 Gene3D G3DSA:3.20.80.10 123 289 1.0E-63 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS02980 94d81b5e728aaa5d20311dee4e29ab3b 289 SMART SM00342 21 104 1.0E-31 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS17545 e90ccb61746fe4615906d210974806dd 259 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 28 258 4.0E-94 T 25-04-2017 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 A4U88_RS17545 e90ccb61746fe4615906d210974806dd 259 SUPERFAMILY SSF117856 28 258 4.81E-87 T 25-04-2017 A4U88_RS17545 e90ccb61746fe4615906d210974806dd 259 PIRSF PIRSF001332 13 259 6.0E-97 T 25-04-2017 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 A4U88_RS17545 e90ccb61746fe4615906d210974806dd 259 Pfam PF03306 Alpha-acetolactate decarboxylase 29 245 3.7E-88 T 25-04-2017 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 A4U88_RS17545 e90ccb61746fe4615906d210974806dd 259 Gene3D G3DSA:3.30.1330.80 106 225 9.6E-51 T 25-04-2017 A4U88_RS00950 93daa8fdf8cd4d2b7fde91059a879bcc 275 Pfam PF01738 Dienelactone hydrolase family 49 272 4.7E-72 T 25-04-2017 IPR002925 Dienelactone hydrolase GO:0016787 A4U88_RS00950 93daa8fdf8cd4d2b7fde91059a879bcc 275 SUPERFAMILY SSF53474 40 272 2.44E-51 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS00950 93daa8fdf8cd4d2b7fde91059a879bcc 275 Gene3D G3DSA:3.40.50.1820 39 272 3.5E-70 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.5E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 SUPERFAMILY SSF46785 4 112 5.99E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 Gene3D G3DSA:1.10.10.10 4 86 1.8E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 SUPERFAMILY SSF53850 90 297 4.89E-41 T 25-04-2017 A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 Gene3D G3DSA:3.40.190.10 93 178 4.1E-21 T 25-04-2017 A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.4E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.4E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.4E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 Pfam PF03466 LysR substrate binding domain 90 294 7.6E-40 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS14325 1ff7e2caaa3ef37646e72c814a3cc683 309 Gene3D G3DSA:3.40.190.10 179 260 1.0E-24 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 SUPERFAMILY SSF51395 3 363 6.02E-110 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 SUPERFAMILY SSF51905 567 651 3.15E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 SUPERFAMILY SSF51905 461 528 3.15E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 Gene3D G3DSA:3.20.20.70 4 361 5.0E-120 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 1.5E-88 T 25-04-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 644 1.1E-25 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 SUPERFAMILY SSF51971 334 520 8.24E-43 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 620 634 4.4E-5 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 4.4E-5 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 Gene3D G3DSA:3.50.50.60 470 626 2.4E-51 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 Gene3D G3DSA:3.50.50.60 362 464 1.1E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 1.2E-10 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 1.2E-10 T 25-04-2017 A4U88_RS21115 623affdf18d14f999268e61e81fe2664 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 619 635 1.2E-10 T 25-04-2017 A4U88_RS23680 2b85c4591e755e8ec81b6b05b71dfdcc 144 SUPERFAMILY SSF52821 16 143 6.68E-29 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS23680 2b85c4591e755e8ec81b6b05b71dfdcc 144 Gene3D G3DSA:3.40.250.10 23 143 4.9E-26 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS23680 2b85c4591e755e8ec81b6b05b71dfdcc 144 SMART SM00450 41 139 1.7E-18 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS23680 2b85c4591e755e8ec81b6b05b71dfdcc 144 Pfam PF00581 Rhodanese-like domain 45 134 1.8E-13 T 25-04-2017 IPR001763 Rhodanese-like domain A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 Gene3D G3DSA:1.10.10.60 262 309 2.2E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 SUPERFAMILY SSF46689 261 309 1.93E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 Gene3D G3DSA:3.40.50.880 3 214 2.5E-58 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 Pfam PF12833 Helix-turn-helix domain 231 309 1.1E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 Gene3D G3DSA:1.10.10.60 215 261 9.4E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 SUPERFAMILY SSF46689 208 256 1.79E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 SUPERFAMILY SSF52317 1 191 2.47E-51 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 Pfam PF01965 DJ-1/PfpI family 3 170 2.7E-23 T 25-04-2017 IPR002818 DJ-1/PfpI A4U88_RS06470 f3fe82de95308daf73e063cdcc13cc82 314 SMART SM00342 225 308 1.9E-25 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 Gene3D G3DSA:3.40.50.720 2 257 1.4E-70 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 SUPERFAMILY SSF51735 8 257 5.59E-65 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 Pfam PF00106 short chain dehydrogenase 10 191 8.6E-51 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.6E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.6E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.6E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.4E-36 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 2.4E-36 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 2.4E-36 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 2.4E-36 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.4E-36 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS14885 6edbf480ca41db1bd56e5ff33160ed8a 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.4E-36 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 130 3.3E-23 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 Gene3D G3DSA:3.30.360.10 150 277 1.6E-46 T 25-04-2017 A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 Gene3D G3DSA:3.30.360.10 325 374 1.6E-46 T 25-04-2017 A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 SUPERFAMILY SSF51735 3 158 1.47E-47 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 Gene3D G3DSA:3.40.50.720 1 149 3.2E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 265 2.4E-9 T 25-04-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS06950 44dfbf94c1f55c9f0e5b21e5fd73e939 376 SUPERFAMILY SSF55347 135 310 1.36E-36 T 25-04-2017 A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 9 455 5.8E-131 T 25-04-2017 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 PIRSF PIRSF000726 8 455 4.0E-147 T 25-04-2017 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 SUPERFAMILY SSF53633 10 297 1.44E-74 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 Gene3D G3DSA:3.40.1160.10 112 300 5.7E-60 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 Gene3D G3DSA:3.40.1160.10 4 59 5.7E-60 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 9 455 9.1E-142 T 25-04-2017 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 ProSitePatterns PS00324 Aspartokinase signature. 12 20 - T 25-04-2017 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 SUPERFAMILY SSF55021 302 400 6.41E-17 T 25-04-2017 A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 Pfam PF00696 Amino acid kinase family 10 283 4.9E-47 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS22005 aa4176ad484a99e0b8ddda93996fbaa3 455 SUPERFAMILY SSF55021 383 454 5.15E-13 T 25-04-2017 A4U88_RS04790 5cd31c66d0c4cc7ba68a9d6d8400a4de 374 Gene3D G3DSA:3.20.20.105 1 366 4.0E-171 T 25-04-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 A4U88_RS04790 5cd31c66d0c4cc7ba68a9d6d8400a4de 374 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 367 1.5E-188 T 25-04-2017 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 A4U88_RS04790 5cd31c66d0c4cc7ba68a9d6d8400a4de 374 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 359 58.728 T 25-04-2017 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 A4U88_RS04790 5cd31c66d0c4cc7ba68a9d6d8400a4de 374 Pfam PF01702 Queuine tRNA-ribosyltransferase 126 361 1.9E-95 T 25-04-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 A4U88_RS04790 5cd31c66d0c4cc7ba68a9d6d8400a4de 374 SUPERFAMILY SSF51713 2 364 1.07E-165 T 25-04-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 A4U88_RS04790 5cd31c66d0c4cc7ba68a9d6d8400a4de 374 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 367 7.1E-178 T 25-04-2017 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 A4U88_RS17720 a32d269d53bbf6cc077a22a98510e01d 469 Pfam PF00324 Amino acid permease 19 456 3.1E-117 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS17720 a32d269d53bbf6cc077a22a98510e01d 469 PIRSF PIRSF006060 2 463 1.3E-78 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS17720 a32d269d53bbf6cc077a22a98510e01d 469 ProSitePatterns PS00218 Amino acid permeases signature. 44 75 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 TIGRFAM TIGR01230 agmatinase: agmatinase 33 305 3.0E-62 T 25-04-2017 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|Reactome: R-HSA-351143 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 ProSitePatterns PS01053 Arginase family signature. 235 256 - T 25-04-2017 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 Gene3D G3DSA:3.40.800.10 4 307 5.4E-128 T 25-04-2017 IPR023696 Ureohydrolase domain A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 Pfam PF00491 Arginase family 33 304 4.7E-90 T 25-04-2017 IPR006035 Ureohydrolase GO:0046872 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 PIRSF PIRSF036979 11 310 1.5E-102 T 25-04-2017 IPR006035 Ureohydrolase GO:0046872 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 PRINTS PR00116 Arginase signature 119 134 1.6E-14 T 25-04-2017 IPR006035 Ureohydrolase GO:0046872 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 PRINTS PR00116 Arginase signature 232 261 1.6E-14 T 25-04-2017 IPR006035 Ureohydrolase GO:0046872 A4U88_RS07865 f2c852535ed94b652645345537a8e51c 310 SUPERFAMILY SSF52768 11 307 9.0E-102 T 25-04-2017 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 SUPERFAMILY SSF56645 1 231 1.83E-61 T 25-04-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 338 357 - T 25-04-2017 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 219 2.2E-22 T 25-04-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 Gene3D G3DSA:2.40.110.10 124 220 6.6E-29 T 25-04-2017 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 SUPERFAMILY SSF47203 231 379 1.19E-41 T 25-04-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 Gene3D G3DSA:1.20.140.10 221 379 6.7E-48 T 25-04-2017 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 3.7E-19 T 25-04-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 379 9.9E-36 T 25-04-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 A4U88_RS05365 1ebdb0de78fbde91ec0b6b722da47d42 385 Gene3D G3DSA:1.10.540.10 1 121 4.1E-25 T 25-04-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 A4U88_RS11145 b5b20771b667ea8dd04a0723b076170c 432 Gene3D G3DSA:1.20.1250.20 254 427 7.9E-18 T 25-04-2017 A4U88_RS11145 b5b20771b667ea8dd04a0723b076170c 432 Gene3D G3DSA:1.20.1250.20 48 228 1.1E-33 T 25-04-2017 A4U88_RS11145 b5b20771b667ea8dd04a0723b076170c 432 ProSitePatterns PS00216 Sugar transport proteins signature 1. 103 119 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS11145 b5b20771b667ea8dd04a0723b076170c 432 Pfam PF07690 Major Facilitator Superfamily 53 271 4.1E-29 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS11145 b5b20771b667ea8dd04a0723b076170c 432 SUPERFAMILY SSF103473 41 427 3.27E-66 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS08880 9c2af3a86ef63599925a94ac69a4ef1b 113 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 23 111 2.0E-31 T 25-04-2017 IPR009707 Membrane protein GlpM/YdgC A4U88_RS08880 9c2af3a86ef63599925a94ac69a4ef1b 113 Pfam PF06942 GlpM protein 5 110 6.9E-47 T 25-04-2017 IPR009707 Membrane protein GlpM/YdgC A4U88_RS03690 5aff0cf98bdbf288040709cf0c9915ee 294 Gene3D G3DSA:2.120.10.30 8 263 2.9E-18 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS03690 5aff0cf98bdbf288040709cf0c9915ee 294 SUPERFAMILY SSF63829 2 264 8.5E-24 T 25-04-2017 A4U88_RS06745 d378d2e361bee513557994d8dfaac972 272 SUPERFAMILY SSF53850 26 270 3.04E-70 T 25-04-2017 A4U88_RS06745 d378d2e361bee513557994d8dfaac972 272 PIRSF PIRSF002854 1 272 4.9E-89 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS06745 d378d2e361bee513557994d8dfaac972 272 Gene3D G3DSA:3.40.190.10 26 158 2.0E-47 T 25-04-2017 A4U88_RS06745 d378d2e361bee513557994d8dfaac972 272 Pfam PF03180 NLPA lipoprotein 27 270 1.7E-76 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 1.1E-266 T 25-04-2017 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 SUPERFAMILY SSF48557 2 458 4.27E-144 T 25-04-2017 IPR008948 L-Aspartase-like GO:0003824 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 Pfam PF00206 Lyase 13 345 1.7E-112 T 25-04-2017 IPR022761 Fumarate lyase, N-terminal A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 Gene3D G3DSA:1.20.200.10 143 405 6.3E-89 T 25-04-2017 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 Gene3D G3DSA:1.10.40.30 411 462 2.8E-19 T 25-04-2017 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 Gene3D G3DSA:1.10.275.10 4 142 1.7E-56 T 25-04-2017 IPR024083 Fumarase/histidase, N-terminal A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 1.2E-5 T 25-04-2017 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 1.2E-5 T 25-04-2017 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 1.2E-5 T 25-04-2017 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 Pfam PF10415 Fumarase C C-terminus 411 464 1.7E-17 T 25-04-2017 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 25-04-2017 IPR020557 Fumarate lyase, conserved site GO:0003824 A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 1.7E-27 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 1.7E-27 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 1.7E-27 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS01510 06f5c59071caeb98fc16a513bfa3e311 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 1.7E-27 T 25-04-2017 IPR000362 Fumarate lyase family A4U88_RS06315 f965701c6feaeb524a1cbb0473ea19e6 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.3E-23 T 25-04-2017 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 A4U88_RS06315 f965701c6feaeb524a1cbb0473ea19e6 81 SUPERFAMILY SSF54285 1 81 2.24E-22 T 25-04-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp A4U88_RS06315 f965701c6feaeb524a1cbb0473ea19e6 81 Pfam PF02597 ThiS family 4 81 1.3E-19 T 25-04-2017 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 A4U88_RS06315 f965701c6feaeb524a1cbb0473ea19e6 81 Gene3D G3DSA:3.10.20.30 1 81 3.4E-24 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS01450 8a0bcbaba5aec8d544e56119137f26ef 162 Pfam PF00419 Fimbrial protein 26 161 2.5E-16 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01450 8a0bcbaba5aec8d544e56119137f26ef 162 Gene3D G3DSA:2.60.40.1090 24 162 6.2E-11 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01450 8a0bcbaba5aec8d544e56119137f26ef 162 SUPERFAMILY SSF49401 36 162 4.47E-17 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS21805 ad098b67d39382acd4f788ddc12e745f 176 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 40.502 T 25-04-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 A4U88_RS21805 ad098b67d39382acd4f788ddc12e745f 176 PIRSF PIRSF002070 2 171 1.2E-40 T 25-04-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 A4U88_RS21805 ad098b67d39382acd4f788ddc12e745f 176 SUPERFAMILY SSF50249 4 176 3.43E-64 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS21805 ad098b67d39382acd4f788ddc12e745f 176 Gene3D G3DSA:2.40.50.140 4 176 1.8E-59 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS21805 ad098b67d39382acd4f788ddc12e745f 176 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 176 8.1E-65 T 25-04-2017 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 A4U88_RS21805 ad098b67d39382acd4f788ddc12e745f 176 Pfam PF00436 Single-strand binding protein family 6 112 6.5E-44 T 25-04-2017 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 Gene3D G3DSA:2.60.260.20 127 214 1.9E-17 T 25-04-2017 A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 SMART SM00271 4 61 2.5E-25 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 Gene3D G3DSA:2.60.260.20 218 293 3.8E-18 T 25-04-2017 A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 Pfam PF00226 DnaJ domain 5 66 4.5E-23 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 SUPERFAMILY SSF49493 221 303 4.32E-18 T 25-04-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 Gene3D G3DSA:1.10.287.110 2 114 1.4E-29 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 PRINTS PR00625 DnaJ domain signature 7 25 3.2E-19 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 PRINTS PR00625 DnaJ domain signature 25 40 3.2E-19 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 PRINTS PR00625 DnaJ domain signature 61 80 3.2E-19 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 PRINTS PR00625 DnaJ domain signature 41 61 3.2E-19 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 Pfam PF01556 DnaJ C terminal domain 137 293 9.2E-36 T 25-04-2017 IPR002939 Chaperone DnaJ, C-terminal A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 25-04-2017 IPR018253 DnaJ domain, conserved site A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 SUPERFAMILY SSF46565 1 114 2.75E-27 T 25-04-2017 IPR001623 DnaJ domain A4U88_RS22740 4848941d0e1d9bdbe930438a562f51e8 320 SUPERFAMILY SSF49493 132 228 9.55E-18 T 25-04-2017 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 A4U88_RS05100 55fe2d442295bdb70c9e4c73332e6d85 237 Gene3D G3DSA:3.40.50.300 1 219 2.9E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05100 55fe2d442295bdb70c9e4c73332e6d85 237 SUPERFAMILY SSF52540 2 215 2.34E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05100 55fe2d442295bdb70c9e4c73332e6d85 237 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05100 55fe2d442295bdb70c9e4c73332e6d85 237 Pfam PF00005 ABC transporter 20 158 1.8E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS05100 55fe2d442295bdb70c9e4c73332e6d85 237 SMART SM00382 26 207 1.4E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16750 8456d9170ef2d0209371eb03090b22d4 256 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 15 252 5.9E-81 T 25-04-2017 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 A4U88_RS16750 8456d9170ef2d0209371eb03090b22d4 256 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 9 253 33.886 T 25-04-2017 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 A4U88_RS16750 8456d9170ef2d0209371eb03090b22d4 256 SUPERFAMILY SSF53474 9 252 1.19E-43 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS16750 8456d9170ef2d0209371eb03090b22d4 256 Gene3D G3DSA:3.40.50.1820 9 253 2.0E-54 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS16750 8456d9170ef2d0209371eb03090b22d4 256 Pfam PF12697 Alpha/beta hydrolase family 19 247 1.1E-19 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS04025 46b2743f1fb99b5e92555445e835e422 279 Gene3D G3DSA:3.40.50.10490 66 252 7.8E-12 T 25-04-2017 A4U88_RS04025 46b2743f1fb99b5e92555445e835e422 279 SUPERFAMILY SSF53697 94 253 3.78E-13 T 25-04-2017 A4U88_RS04025 46b2743f1fb99b5e92555445e835e422 279 Pfam PF01380 SIS domain 124 247 4.5E-13 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS04025 46b2743f1fb99b5e92555445e835e422 279 SUPERFAMILY SSF46689 3 79 3.4E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04025 46b2743f1fb99b5e92555445e835e422 279 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 72 6.7E-16 T 25-04-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 A4U88_RS04025 46b2743f1fb99b5e92555445e835e422 279 Gene3D G3DSA:1.10.10.10 3 65 5.2E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09375 d4ace7fb3e64b7e2b29af4bf7e712889 245 SUPERFAMILY SSF89550 3 241 1.83E-63 T 25-04-2017 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 A4U88_RS09375 d4ace7fb3e64b7e2b29af4bf7e712889 245 Pfam PF02811 PHP domain 5 114 3.3E-8 T 25-04-2017 IPR004013 PHP domain GO:0003824 A4U88_RS09375 d4ace7fb3e64b7e2b29af4bf7e712889 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 50.142 T 25-04-2017 IPR023710 Probable phosphatase YcdX GO:0008270 A4U88_RS09375 d4ace7fb3e64b7e2b29af4bf7e712889 245 Gene3D G3DSA:3.20.20.140 1 237 1.8E-62 T 25-04-2017 A4U88_RS09375 d4ace7fb3e64b7e2b29af4bf7e712889 245 SMART SM00481 4 78 3.7E-17 T 25-04-2017 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 A4U88_RS01690 f17d936692165b8fc6a99aed717a8840 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 128 2.1E-35 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS01690 f17d936692165b8fc6a99aed717a8840 141 Gene3D G3DSA:1.10.10.10 2 131 2.5E-39 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01690 f17d936692165b8fc6a99aed717a8840 141 SUPERFAMILY SSF46785 2 131 1.3E-33 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01690 f17d936692165b8fc6a99aed717a8840 141 Hamap MF_01177 HTH-type transcriptional repressor NsrR [nsrR]. 1 141 44.705 T 25-04-2017 IPR023761 Transcriptional repressor HTH, NsrR GO:0045892 A4U88_RS01690 f17d936692165b8fc6a99aed717a8840 141 Pfam PF02082 Transcriptional regulator 2 83 1.1E-24 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS01800 3e9f4fedb13929bf74067ed6e802d8ab 213 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 44 206 38.978 T 25-04-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS01800 3e9f4fedb13929bf74067ed6e802d8ab 213 Pfam PF01625 Peptide methionine sulfoxide reductase 47 200 3.8E-67 T 25-04-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS01800 3e9f4fedb13929bf74067ed6e802d8ab 213 SUPERFAMILY SSF55068 8 209 8.63E-83 T 25-04-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS01800 3e9f4fedb13929bf74067ed6e802d8ab 213 Gene3D G3DSA:3.30.1060.10 9 200 1.3E-79 T 25-04-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS01800 3e9f4fedb13929bf74067ed6e802d8ab 213 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 46 200 1.6E-69 T 25-04-2017 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 SUPERFAMILY SSF51735 4 250 8.0E-67 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 190 7.1E-4 T 25-04-2017 A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 Gene3D G3DSA:3.40.50.720 5 252 7.8E-70 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.7E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.7E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 1.7E-10 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 6.2E-24 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 6.2E-24 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 6.2E-24 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 6.2E-24 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 6.2E-24 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06930 6a7fb7914fc041afe2e908d76e48bd52 294 Pfam PF00106 short chain dehydrogenase 6 189 4.4E-52 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS16070 e351fb50379f913cf945c71a11ba9638 304 Gene3D G3DSA:3.40.50.720 2 211 4.3E-49 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16070 e351fb50379f913cf945c71a11ba9638 304 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 153 5.8E-4 T 25-04-2017 A4U88_RS16070 e351fb50379f913cf945c71a11ba9638 304 SUPERFAMILY SSF51735 2 241 1.18E-55 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16070 e351fb50379f913cf945c71a11ba9638 304 SUPERFAMILY SSF51735 268 301 1.18E-55 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16070 e351fb50379f913cf945c71a11ba9638 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 207 2.8E-25 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 5.5E-34 T 25-04-2017 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 142 7.4E-25 T 25-04-2017 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 SUPERFAMILY SSF51735 1 167 6.43E-62 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 291 4.3E-79 T 25-04-2017 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 Gene3D G3DSA:3.40.50.720 1 174 1.1E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 SUPERFAMILY SSF48179 168 289 6.46E-36 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS04890 f27b5c3470137d682244b47877d37e90 303 Gene3D G3DSA:1.10.1040.10 175 290 7.9E-42 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 PIRSF PIRSF000018 6 394 3.4E-138 T 25-04-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 288 369 3.5E-9 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Gene3D G3DSA:1.10.760.10 298 390 1.9E-21 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Gene3D G3DSA:1.10.710.10 147 176 3.1E-4 T 25-04-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Gene3D G3DSA:1.10.710.10 281 297 3.1E-4 T 25-04-2017 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 SUPERFAMILY SSF46626 275 385 9.45E-19 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Gene3D G3DSA:1.10.760.10 177 269 1.9E-9 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Gene3D G3DSA:1.10.760.10 20 120 6.9E-17 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 SUPERFAMILY SSF46626 168 275 2.21E-16 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 SUPERFAMILY SSF46626 18 120 1.25E-18 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS18500 aa6063930634d7199a88c160352d6e64 394 Pfam PF00034 Cytochrome c 25 120 8.7E-5 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19750 4e43f5694cbf282404a4f02824cc3cb3 249 Pfam PF01551 Peptidase family M23 143 236 1.7E-30 T 25-04-2017 IPR016047 Peptidase M23 A4U88_RS19750 4e43f5694cbf282404a4f02824cc3cb3 249 SUPERFAMILY SSF51261 49 240 8.37E-49 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS19750 4e43f5694cbf282404a4f02824cc3cb3 249 Gene3D G3DSA:3.10.350.10 48 92 1.3E-12 T 25-04-2017 IPR018392 LysM domain A4U88_RS19750 4e43f5694cbf282404a4f02824cc3cb3 249 SMART SM00257 48 92 1.4E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS19750 4e43f5694cbf282404a4f02824cc3cb3 249 Gene3D G3DSA:2.70.70.10 101 241 1.3E-40 T 25-04-2017 A4U88_RS19750 4e43f5694cbf282404a4f02824cc3cb3 249 Pfam PF01476 LysM domain 49 92 4.0E-10 T 25-04-2017 IPR018392 LysM domain A4U88_RS22920 46361fc21f257b62162b6b6cd5e20573 278 Pfam PF01418 Helix-turn-helix domain, rpiR family 11 79 8.5E-13 T 25-04-2017 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 A4U88_RS22920 46361fc21f257b62162b6b6cd5e20573 278 Gene3D G3DSA:3.40.50.10490 117 277 3.8E-29 T 25-04-2017 A4U88_RS22920 46361fc21f257b62162b6b6cd5e20573 278 SUPERFAMILY SSF53697 117 270 4.85E-28 T 25-04-2017 A4U88_RS22920 46361fc21f257b62162b6b6cd5e20573 278 SUPERFAMILY SSF46689 11 85 1.09E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS22920 46361fc21f257b62162b6b6cd5e20573 278 Gene3D G3DSA:1.10.10.10 10 84 7.6E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22920 46361fc21f257b62162b6b6cd5e20573 278 Pfam PF01380 SIS domain 142 268 2.2E-26 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:3.40.190.10 185 262 3.0E-32 T 25-04-2017 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:3.40.190.10 92 184 7.4E-21 T 25-04-2017 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 SUPERFAMILY SSF53850 91 322 5.89E-45 T 25-04-2017 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 SUPERFAMILY SSF46785 1 85 2.89E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 Pfam PF03466 LysR substrate binding domain 92 292 2.1E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 5.9E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS12950 81960cb5794a9efd0285fd107a12c4f5 324 Gene3D G3DSA:1.10.10.10 1 81 1.0E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00325 44301bb0e4ededb1a6e306f0feb73b1b 257 Gene3D G3DSA:3.40.50.80 125 252 4.9E-30 T 25-04-2017 A4U88_RS00325 44301bb0e4ededb1a6e306f0feb73b1b 257 Gene3D G3DSA:2.40.30.10 17 118 4.8E-27 T 25-04-2017 A4U88_RS00325 44301bb0e4ededb1a6e306f0feb73b1b 257 Pfam PF04954 Siderophore-interacting protein 130 249 3.8E-25 T 25-04-2017 IPR007037 Siderophore-interacting protein A4U88_RS00325 44301bb0e4ededb1a6e306f0feb73b1b 257 Pfam PF08021 Siderophore-interacting FAD-binding domain 72 118 2.2E-13 T 25-04-2017 IPR013113 FAD-binding 9, siderophore-interacting A4U88_RS00325 44301bb0e4ededb1a6e306f0feb73b1b 257 SUPERFAMILY SSF63380 16 121 2.87E-13 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS18195 d709911655707d26afe976143962bdbc 118 PIRSF PIRSF011474 1 118 3.6E-37 T 25-04-2017 IPR009693 Glucitol operon activator A4U88_RS18195 d709911655707d26afe976143962bdbc 118 Pfam PF06923 Glucitol operon activator protein (GutM) 5 110 2.2E-33 T 25-04-2017 IPR009693 Glucitol operon activator A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 Gene3D G3DSA:3.40.50.1000 77 194 2.9E-32 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 3.8E-6 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 96 109 3.8E-6 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 3.8E-6 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 173 186 3.8E-6 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 79 184 2.2E-9 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 SUPERFAMILY SSF56784 3 191 1.68E-42 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 Gene3D G3DSA:1.10.150.240 16 76 1.9E-32 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS23910 9a6947879ced7b9bcae83218f61ace0d 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 69 184 8.4E-17 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 17 193 1.5E-4 T 25-04-2017 A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 Gene3D G3DSA:3.40.50.720 12 255 7.0E-90 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 1.3E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 1.3E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.3E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 3.4E-44 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 18 35 3.4E-44 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 3.4E-44 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.4E-44 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 3.4E-44 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 3.4E-44 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 149 177 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 SUPERFAMILY SSF51735 15 255 5.16E-86 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17780 b245153b24799f178fecc14ed9c3c1b9 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 23 254 8.2E-71 T 25-04-2017 A4U88_RS12630 31f3a72dd2f3458af144ddf526e890f9 312 Gene3D G3DSA:3.40.50.620 23 198 7.8E-20 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS12630 31f3a72dd2f3458af144ddf526e890f9 312 Pfam PF01171 PP-loop family 42 200 3.3E-12 T 25-04-2017 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 A4U88_RS12630 31f3a72dd2f3458af144ddf526e890f9 312 SUPERFAMILY SSF52402 17 236 2.99E-53 T 25-04-2017 A4U88_RS12630 31f3a72dd2f3458af144ddf526e890f9 312 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 10 271 57.349 T 25-04-2017 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 Reactome: R-HSA-6782315 A4U88_RS09925 1dd07dc6144808a33ed86f046b55fc6c 417 SMART SM01329 29 413 1.7E-179 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS09925 1dd07dc6144808a33ed86f046b55fc6c 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 25-04-2017 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 A4U88_RS09925 1dd07dc6144808a33ed86f046b55fc6c 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 1.5E-235 T 25-04-2017 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 A4U88_RS09925 1dd07dc6144808a33ed86f046b55fc6c 417 Gene3D G3DSA:3.40.718.10 12 417 1.6E-167 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS09925 1dd07dc6144808a33ed86f046b55fc6c 417 SUPERFAMILY SSF53659 4 417 8.06E-149 T 25-04-2017 A4U88_RS09925 1dd07dc6144808a33ed86f046b55fc6c 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 413 4.7E-117 T 25-04-2017 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 A4U88_RS00345 e0cae5337e528a900847c355158c1ccf 366 SUPERFAMILY SSF51395 2 366 9.47E-123 T 25-04-2017 A4U88_RS00345 e0cae5337e528a900847c355158c1ccf 366 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 344 2.9E-87 T 25-04-2017 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 A4U88_RS00345 e0cae5337e528a900847c355158c1ccf 366 Gene3D G3DSA:3.20.20.70 2 364 1.2E-132 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS17365 860a89386ddfcefc2895ff891f321efe 668 Gene3D G3DSA:3.20.20.370 72 339 1.7E-28 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS17365 860a89386ddfcefc2895ff891f321efe 668 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 315 642 8.6E-151 T 25-04-2017 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal A4U88_RS17365 860a89386ddfcefc2895ff891f321efe 668 Pfam PF01522 Polysaccharide deacetylase 101 267 4.3E-29 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS17365 860a89386ddfcefc2895ff891f321efe 668 SUPERFAMILY SSF88713 221 316 3.71E-37 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS17365 860a89386ddfcefc2895ff891f321efe 668 SUPERFAMILY SSF88713 63 193 3.71E-37 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS17365 860a89386ddfcefc2895ff891f321efe 668 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 46 662 8.0E-277 T 25-04-2017 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0042710 A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 6 256 7.7E-103 T 25-04-2017 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 Gene3D G3DSA:3.40.50.720 2 255 3.3E-77 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.7E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.7E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.7E-14 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 8.1E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 8.1E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 8.1E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 8.1E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 8.1E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 8.1E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 253 1.1E-54 T 25-04-2017 A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS02505 e4f710eea3bcc28cbbadd8bbc4c3e693 256 SUPERFAMILY SSF51735 1 255 4.13E-73 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17205 569c1da30fc8ecfd757fab17a70338c6 160 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 70 2.8E-7 T 25-04-2017 IPR013078 Histidine phosphatase superfamily, clade-1 A4U88_RS17205 569c1da30fc8ecfd757fab17a70338c6 160 Gene3D G3DSA:3.40.50.1240 1 156 4.8E-40 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS17205 569c1da30fc8ecfd757fab17a70338c6 160 SUPERFAMILY SSF53254 1 142 3.73E-17 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS17205 569c1da30fc8ecfd757fab17a70338c6 160 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 153 2.6E-48 T 25-04-2017 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 A4U88_RS17205 569c1da30fc8ecfd757fab17a70338c6 160 SMART SM00855 2 115 0.0015 T 25-04-2017 IPR013078 Histidine phosphatase superfamily, clade-1 A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 Gene3D G3DSA:3.40.190.10 184 262 2.4E-23 T 25-04-2017 A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 Gene3D G3DSA:3.40.190.10 94 183 7.6E-16 T 25-04-2017 A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 SUPERFAMILY SSF53850 94 298 4.48E-41 T 25-04-2017 A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 Gene3D G3DSA:1.10.10.10 2 83 1.4E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 SUPERFAMILY SSF46785 2 84 8.71E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.5E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19530 fd93e120be4d3e9e3a3a2a69602c569d 307 Pfam PF03466 LysR substrate binding domain 93 294 5.1E-41 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.1E-17 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 1.1E-17 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.1E-17 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.1E-17 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.1E-17 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.9E-7 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.9E-7 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.9E-7 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 SUPERFAMILY SSF51735 4 258 2.7E-63 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 Gene3D G3DSA:3.40.50.720 3 256 9.0E-63 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18190 cc0961c5419d0e4f933708c64f8d2582 259 Pfam PF00106 short chain dehydrogenase 4 197 3.6E-45 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 9 306 9.1E-139 T 25-04-2017 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 1 309 46.429 T 25-04-2017 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 Gene3D G3DSA:3.50.14.10 236 281 1.2E-91 T 25-04-2017 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 Gene3D G3DSA:3.50.14.10 7 173 1.2E-91 T 25-04-2017 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 Gene3D G3DSA:3.30.54.10 174 235 1.0E-34 T 25-04-2017 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 Gene3D G3DSA:3.30.54.10 295 308 1.0E-34 T 25-04-2017 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 308 2.8E-156 T 25-04-2017 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 A4U88_RS11130 920f973dab12ded88e464a70f5b6ce50 312 SUPERFAMILY SSF56596 6 307 1.15E-114 T 25-04-2017 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 A4U88_RS08400 dba1b81704c3088ca12b318167e97036 242 Pfam PF04288 MukE-like family 10 230 4.1E-126 T 25-04-2017 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 A4U88_RS08400 dba1b81704c3088ca12b318167e97036 242 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 240 50.851 T 25-04-2017 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 SUPERFAMILY SSF51735 6 249 1.48E-68 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 Gene3D G3DSA:3.40.50.720 3 249 9.0E-73 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 1.6E-9 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.6E-9 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.6E-9 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.5E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.5E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.5E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.5E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.5E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 3.5E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 189 0.0014 T 25-04-2017 A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 248 2.8E-56 T 25-04-2017 A4U88_RS20275 a0f79668111c36016297718d9ebc5eb6 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS19710 f7fc06f4afb9aa373c3601848a84ddd6 269 Pfam PF10703 Molybdenum cofactor biosynthesis protein F 14 258 1.5E-63 T 25-04-2017 IPR024724 Molybdenum cofactor biosynthesis protein F A4U88_RS15425 fcce905194e2208faed06b5298865924 313 SUPERFAMILY SSF49401 174 311 7.46E-20 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS15425 fcce905194e2208faed06b5298865924 313 Pfam PF00419 Fimbrial protein 171 311 3.1E-11 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS15425 fcce905194e2208faed06b5298865924 313 Gene3D G3DSA:2.60.40.1090 177 311 1.3E-21 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS09740 4926c7602ff625cf56bc9c86c7a13511 160 Pfam PF03928 Haem-degrading 22 148 2.9E-31 T 25-04-2017 IPR005624 Haem-degrading A4U88_RS09740 4926c7602ff625cf56bc9c86c7a13511 160 SUPERFAMILY SSF143744 13 152 5.62E-26 T 25-04-2017 A4U88_RS09740 4926c7602ff625cf56bc9c86c7a13511 160 Hamap MF_00761 UPF0303 protein . 4 155 33.06 T 25-04-2017 IPR010371 Uncharacterised protein family UPF0303 A4U88_RS09740 4926c7602ff625cf56bc9c86c7a13511 160 PIRSF PIRSF008757 1 159 2.7E-57 T 25-04-2017 IPR010371 Uncharacterised protein family UPF0303 A4U88_RS19815 c76051f8d4fa1e8d0937c17da2ed86f1 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 3.5E-32 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS19815 c76051f8d4fa1e8d0937c17da2ed86f1 156 SUPERFAMILY SSF51197 1 153 1.35E-33 T 25-04-2017 A4U88_RS19815 c76051f8d4fa1e8d0937c17da2ed86f1 156 Gene3D G3DSA:2.60.120.370 1 151 1.7E-36 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS19815 c76051f8d4fa1e8d0937c17da2ed86f1 156 Pfam PF04074 Domain of unknown function (DUF386) 1 150 3.2E-35 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS14460 92e36e7f8b0d023b7580622a070be492 137 PIRSF PIRSF002889 1 137 7.4E-43 T 25-04-2017 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 A4U88_RS14460 92e36e7f8b0d023b7580622a070be492 137 Pfam PF00460 Flagella basal body rod protein 9 39 2.8E-12 T 25-04-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 A4U88_RS14460 92e36e7f8b0d023b7580622a070be492 137 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 6 135 9.3E-44 T 25-04-2017 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 A4U88_RS14460 92e36e7f8b0d023b7580622a070be492 137 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 25-04-2017 IPR019776 Flagellar basal body rod protein, conserved site A4U88_RS08280 37419f5185b8c4cff6bf7037329c7914 383 Gene3D G3DSA:1.20.1250.20 197 376 4.9E-22 T 25-04-2017 A4U88_RS08280 37419f5185b8c4cff6bf7037329c7914 383 Gene3D G3DSA:1.20.1250.20 6 184 2.8E-18 T 25-04-2017 A4U88_RS08280 37419f5185b8c4cff6bf7037329c7914 383 Pfam PF07690 Major Facilitator Superfamily 11 316 3.9E-25 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS08280 37419f5185b8c4cff6bf7037329c7914 383 SUPERFAMILY SSF103473 6 371 1.31E-45 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13885 115a04cd27d86f3776bae8923487398f 70 Pfam PF13993 YccJ-like protein 4 70 1.8E-37 T 25-04-2017 IPR025600 YccJ-like protein A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 Gene3D G3DSA:2.60.40.360 27 144 9.4E-43 T 25-04-2017 IPR008962 PapD-like A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 144 1.9E-36 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 PRINTS PR00969 Pili chaperone signature 126 141 3.1E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 PRINTS PR00969 Pili chaperone signature 162 177 3.1E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 PRINTS PR00969 Pili chaperone signature 73 94 3.1E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 PRINTS PR00969 Pili chaperone signature 103 120 3.1E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 PRINTS PR00969 Pili chaperone signature 27 36 3.1E-34 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 SUPERFAMILY SSF49584 151 242 7.72E-21 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 SUPERFAMILY SSF49354 27 144 9.94E-38 T 25-04-2017 IPR008962 PapD-like A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 167 230 1.8E-13 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 Gene3D G3DSA:2.60.40.1070 150 242 4.0E-25 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS22995 31d4109e9593df83b877fc9f275a3504 248 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 102 119 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS02040 6785e8563fe1349e212f9ce1f1c94acc 173 Pfam PF02036 SCP-2 sterol transfer family 43 133 4.4E-19 T 25-04-2017 IPR003033 SCP2 sterol-binding domain A4U88_RS02040 6785e8563fe1349e212f9ce1f1c94acc 173 Gene3D G3DSA:3.30.1050.10 59 135 1.5E-12 T 25-04-2017 IPR003033 SCP2 sterol-binding domain A4U88_RS02040 6785e8563fe1349e212f9ce1f1c94acc 173 SUPERFAMILY SSF55718 42 137 4.0E-22 T 25-04-2017 IPR003033 SCP2 sterol-binding domain A4U88_RS02040 6785e8563fe1349e212f9ce1f1c94acc 173 PIRSF PIRSF025550 1 173 1.3E-81 T 25-04-2017 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT A4U88_RS12205 583372a5b397e5850b1f78426a0a3af4 49 Pfam PF00583 Acetyltransferase (GNAT) family 1 36 8.5E-5 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS12205 583372a5b397e5850b1f78426a0a3af4 49 SUPERFAMILY SSF55729 1 36 2.17E-7 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS12205 583372a5b397e5850b1f78426a0a3af4 49 Gene3D G3DSA:3.40.630.30 1 36 1.0E-7 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02085 38e1e92cbde56bf8ac2c1c4d9f1ba00f 260 Gene3D G3DSA:3.60.15.10 1 251 3.0E-60 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS02085 38e1e92cbde56bf8ac2c1c4d9f1ba00f 260 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 246 6.6E-122 T 25-04-2017 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55 A4U88_RS02085 38e1e92cbde56bf8ac2c1c4d9f1ba00f 260 Pfam PF12706 Beta-lactamase superfamily domain 61 221 3.8E-19 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS02085 38e1e92cbde56bf8ac2c1c4d9f1ba00f 260 SUPERFAMILY SSF56281 1 249 2.75E-39 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS02835 e8f1da3ea905ccbd81a7cb7b14bfa2b1 145 Gene3D G3DSA:3.40.50.10220 26 135 4.2E-42 T 25-04-2017 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS02835 e8f1da3ea905ccbd81a7cb7b14bfa2b1 145 PIRSF PIRSF029225 2 131 1.4E-49 T 25-04-2017 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS02835 e8f1da3ea905ccbd81a7cb7b14bfa2b1 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 3.0E-34 T 25-04-2017 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS02835 e8f1da3ea905ccbd81a7cb7b14bfa2b1 145 SUPERFAMILY SSF102220 27 135 4.84E-34 T 25-04-2017 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS02835 e8f1da3ea905ccbd81a7cb7b14bfa2b1 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 3.7E-47 T 25-04-2017 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS03570 a30ecc08a0fcd70ce39e6b653a139378 446 SUPERFAMILY SSF103473 4 435 2.35E-80 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS03570 a30ecc08a0fcd70ce39e6b653a139378 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 122 147 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS03570 a30ecc08a0fcd70ce39e6b653a139378 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 80 96 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS03570 a30ecc08a0fcd70ce39e6b653a139378 446 Pfam PF07690 Major Facilitator Superfamily 31 306 5.4E-37 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS03570 a30ecc08a0fcd70ce39e6b653a139378 446 Gene3D G3DSA:1.20.1250.20 261 440 3.0E-27 T 25-04-2017 A4U88_RS03570 a30ecc08a0fcd70ce39e6b653a139378 446 Gene3D G3DSA:1.20.1250.20 21 204 6.4E-35 T 25-04-2017 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 SUPERFAMILY SSF55604 7 80 1.57E-20 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 153 437 4.0E-89 T 25-04-2017 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 Gene3D G3DSA:3.30.1360.60 2 82 1.1E-25 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 5 448 1.8E-191 T 25-04-2017 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 3.1E-22 T 25-04-2017 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 Pfam PF00367 phosphotransferase system, EIIB 10 41 1.6E-14 T 25-04-2017 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 A4U88_RS20755 472bd49cdf77fdb385d5ae8da5e2f901 456 Pfam PF02378 Phosphotransferase system, EIIC 110 395 1.7E-45 T 25-04-2017 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 A4U88_RS06505 4037f9edac47aad9637151667cd5a081 179 Pfam PF13420 Acetyltransferase (GNAT) domain 12 165 2.9E-21 T 25-04-2017 A4U88_RS06505 4037f9edac47aad9637151667cd5a081 179 Gene3D G3DSA:3.40.630.30 12 176 2.6E-40 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06505 4037f9edac47aad9637151667cd5a081 179 SUPERFAMILY SSF55729 12 172 1.24E-29 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 798 0.0 T 25-04-2017 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 Gene3D G3DSA:3.40.50.2000 6 467 6.3E-182 T 25-04-2017 A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 SUPERFAMILY SSF53756 6 799 3.06E-295 T 25-04-2017 A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 643 655 - T 25-04-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 Gene3D G3DSA:3.40.50.2000 468 784 3.4E-134 T 25-04-2017 A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 Pfam PF00343 Carbohydrate phosphorylase 94 798 0.0 T 25-04-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS22795 af1eac71bab06c5cc9836c3e911f38b0 801 PIRSF PIRSF000460 2 801 2.2E-208 T 25-04-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS04605 8f599f9988335303d4d8dc2d4d4f426e 707 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 707 1.7E-108 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS04605 8f599f9988335303d4d8dc2d4d4f426e 707 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 161 2.6E-17 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS04605 8f599f9988335303d4d8dc2d4d4f426e 707 Gene3D G3DSA:2.170.130.10 54 171 7.3E-33 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS04605 8f599f9988335303d4d8dc2d4d4f426e 707 Pfam PF00593 TonB dependent receptor 469 701 3.6E-30 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS04605 8f599f9988335303d4d8dc2d4d4f426e 707 SUPERFAMILY SSF56935 56 707 1.45E-125 T 25-04-2017 A4U88_RS04605 8f599f9988335303d4d8dc2d4d4f426e 707 Gene3D G3DSA:2.40.170.20 178 707 2.3E-146 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 SUPERFAMILY SSF55729 364 515 5.32E-14 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Gene3D G3DSA:3.40.630.30 450 514 2.1E-11 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Gene3D G3DSA:3.40.630.30 365 414 2.1E-11 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 13 654 49.308 T 25-04-2017 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 KEGG: 00650+2.3.1.19 A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Pfam PF08351 Domain of unknown function (DUF1726) 62 144 8.7E-6 T 25-04-2017 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Pfam PF17176 tRNA-binding domain 538 657 8.8E-43 T 25-04-2017 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain KEGG: 00650+2.3.1.19 A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Pfam PF05127 Helicase 192 338 1.2E-36 T 25-04-2017 IPR007807 Helicase domain Reactome: R-HSA-6790901 A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 Pfam PF13718 GNAT acetyltransferase 2 370 481 3.1E-15 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS17875 4ada2b44724b994f67c8fddd907c59b2 670 SUPERFAMILY SSF52540 167 286 1.83E-9 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12455 ba47906258a414589a1fce813ff97eb0 272 SUPERFAMILY SSF161098 6 272 1.87E-68 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12455 ba47906258a414589a1fce813ff97eb0 272 Gene3D G3DSA:1.10.3720.10 4 259 6.1E-61 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12455 ba47906258a414589a1fce813ff97eb0 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 265 7.5E-16 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04360 8644c500e0484ad642252c51d39cb88b 303 Gene3D G3DSA:3.60.15.10 1 303 1.1E-119 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS04360 8644c500e0484ad642252c51d39cb88b 303 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 2 303 5.0E-118 T 25-04-2017 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 A4U88_RS04360 8644c500e0484ad642252c51d39cb88b 303 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 303 157.22 T 25-04-2017 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 A4U88_RS04360 8644c500e0484ad642252c51d39cb88b 303 SUPERFAMILY SSF56281 1 303 3.25E-61 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS04360 8644c500e0484ad642252c51d39cb88b 303 Pfam PF12706 Beta-lactamase superfamily domain 50 270 2.5E-38 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS05085 55bd9a25510dab6b93316784ae5fd286 67 Pfam PF05321 Haemolysin expression modulating protein 8 64 3.3E-33 T 25-04-2017 IPR007985 Haemolysin expression modulating, HHA A4U88_RS05085 55bd9a25510dab6b93316784ae5fd286 67 SUPERFAMILY SSF68989 1 67 6.28E-32 T 25-04-2017 IPR007985 Haemolysin expression modulating, HHA A4U88_RS05085 55bd9a25510dab6b93316784ae5fd286 67 Gene3D G3DSA:1.20.1280.40 1 67 2.8E-38 T 25-04-2017 IPR007985 Haemolysin expression modulating, HHA A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 SUPERFAMILY SSF52540 1 339 5.8E-39 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 361 100.674 T 25-04-2017 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 Gene3D G3DSA:3.40.50.300 230 353 3.8E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 Gene3D G3DSA:3.40.50.300 1 171 3.8E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 349 6.3E-39 T 25-04-2017 IPR003395 RecF/RecN/SMC, N-terminal A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 25-04-2017 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 25-04-2017 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 A4U88_RS00015 515ec38520abede2cc84cac03e085df5 361 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 2.8E-134 T 25-04-2017 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 4.0E-19 T 25-04-2017 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 SUPERFAMILY SSF56059 97 302 3.86E-60 T 25-04-2017 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 PIRSF PIRSF039102 38 306 1.3E-91 T 25-04-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Gene3D G3DSA:3.30.1490.20 107 180 1.9E-25 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Gene3D G3DSA:3.30.470.20 85 103 2.6E-52 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Gene3D G3DSA:3.30.470.20 181 305 2.6E-52 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Gene3D G3DSA:3.40.50.20 3 84 8.5E-27 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 25-04-2017 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 SUPERFAMILY SSF52440 3 96 3.74E-28 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 303 4.2E-66 T 25-04-2017 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 25-04-2017 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 3.0E-108 T 25-04-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03375 c26ae673120a5f8889963b6d1cd86d8b 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 36.254 T 25-04-2017 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 SUPERFAMILY SSF55811 1 126 7.31E-39 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 Gene3D G3DSA:3.90.79.10 5 129 1.3E-36 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-10 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-10 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 Pfam PF00293 NUDIX domain 5 120 9.8E-22 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 PRINTS PR01401 Mutator MutT protein signature 77 90 2.1E-10 T 25-04-2017 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 PRINTS PR01401 Mutator MutT protein signature 2 23 2.1E-10 T 25-04-2017 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 A4U88_RS03415 276ed4d45b73f6577b526c5fca25cec3 134 TIGRFAM TIGR00586 mutt: mutator mutT protein 1 126 4.0E-52 T 25-04-2017 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 PRINTS PR00112 Acylphosphatase signature 61 81 2.2E-6 T 25-04-2017 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 PRINTS PR00112 Acylphosphatase signature 26 51 2.2E-6 T 25-04-2017 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 PRINTS PR00112 Acylphosphatase signature 5 20 2.2E-6 T 25-04-2017 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 25-04-2017 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 SUPERFAMILY SSF54975 2 92 1.98E-29 T 25-04-2017 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 Pfam PF00708 Acylphosphatase 5 90 7.9E-25 T 25-04-2017 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 Hamap MF_01450 Acylphosphatase [yccX]. 2 91 28.705 T 25-04-2017 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 25-04-2017 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 A4U88_RS08610 2ad17b251c64a8176d16a7d9b25482f4 92 Gene3D G3DSA:3.30.70.100 2 92 9.3E-30 T 25-04-2017 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 Gene3D G3DSA:1.10.10.10 149 208 5.0E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.1E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.1E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.1E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 SUPERFAMILY SSF46894 147 208 3.74E-18 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 SMART SM00421 153 210 3.6E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 207 1.0E-14 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS02630 7f3426dc5e2e923631737292b291ea6c 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS11340 2c8ce2b6ff26cce3818f80521d2f8c15 148 SUPERFAMILY SSF46785 5 143 1.24E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11340 2c8ce2b6ff26cce3818f80521d2f8c15 148 Pfam PF13463 Winged helix DNA-binding domain 38 104 4.6E-12 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS11340 2c8ce2b6ff26cce3818f80521d2f8c15 148 Gene3D G3DSA:1.10.10.10 5 143 2.6E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11340 2c8ce2b6ff26cce3818f80521d2f8c15 148 SMART SM00347 31 131 3.8E-10 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS10700 740bbc7eb4a64478a52080b4a6bd8eaa 337 Pfam PF03734 L,D-transpeptidase catalytic domain 99 234 2.3E-18 T 25-04-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 A4U88_RS10700 740bbc7eb4a64478a52080b4a6bd8eaa 337 SUPERFAMILY SSF141523 97 234 2.49E-29 T 25-04-2017 A4U88_RS10700 740bbc7eb4a64478a52080b4a6bd8eaa 337 Gene3D G3DSA:2.40.440.10 92 236 4.2E-34 T 25-04-2017 A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 SUPERFAMILY SSF52172 3 132 9.11E-38 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 SMART SM00862 151 227 4.2E-23 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 SMART SM00448 3 114 2.2E-37 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 Gene3D G3DSA:1.10.10.10 129 227 2.8E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 Gene3D G3DSA:3.40.50.2300 6 125 3.8E-36 T 25-04-2017 A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 Pfam PF00072 Response regulator receiver domain 7 114 1.3E-24 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 SUPERFAMILY SSF46894 128 226 3.97E-24 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS19875 63135d00b3c3e0ca277ae3d973b69161 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 1.6E-22 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 25-04-2017 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 6.8E-6 T 25-04-2017 IPR001714 Peptidase M24, methionine aminopeptidase A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 6.8E-6 T 25-04-2017 IPR001714 Peptidase M24, methionine aminopeptidase A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 Pfam PF00557 Metallopeptidase family M24 181 412 8.7E-65 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 SMART SM01011 1 136 4.6E-60 T 25-04-2017 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 SUPERFAMILY SSF55920 175 434 3.14E-86 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 SUPERFAMILY SSF53092 2 174 3.4E-53 T 25-04-2017 IPR028980 Creatinase/Aminopeptidase P, N-terminal A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 Gene3D G3DSA:3.90.230.10 179 434 1.2E-88 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 Gene3D G3DSA:3.40.350.10 2 178 7.6E-55 T 25-04-2017 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal A4U88_RS20015 a9f59b277b550ae415f3eb99cd398015 438 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 1.5E-36 T 25-04-2017 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 25-04-2017 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 4.4E-5 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 4.4E-5 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 Gene3D G3DSA:1.10.260.40 1 49 3.6E-21 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.4E-17 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 SMART SM00354 1 73 1.4E-21 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 SUPERFAMILY SSF47413 1 56 5.27E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 329 6.0E-49 T 25-04-2017 IPR001761 Periplasmic binding protein/LacI sugar binding domain A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 Gene3D G3DSA:3.40.50.2300 173 332 9.0E-33 T 25-04-2017 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 Gene3D G3DSA:3.40.50.2300 50 172 6.6E-20 T 25-04-2017 A4U88_RS10150 a7e289e966de1956bc47a1f4fab24daf 333 SUPERFAMILY SSF53822 63 332 5.44E-41 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 Pfam PF13307 Helicase C-terminal domain 534 688 5.5E-25 T 25-04-2017 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 SMART SM00491 545 677 1.3E-34 T 25-04-2017 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 SUPERFAMILY SSF52540 199 270 4.27E-16 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 SUPERFAMILY SSF52540 49 97 4.27E-16 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 SUPERFAMILY SSF52540 452 670 4.27E-16 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 Gene3D G3DSA:3.40.50.300 454 463 3.4E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 Gene3D G3DSA:3.40.50.300 29 122 3.4E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 Gene3D G3DSA:3.40.50.300 211 286 3.4E-14 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 SMART SM00487 23 307 0.0027 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 SMART SM00488 18 294 0.0066 T 25-04-2017 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 A4U88_RS07085 c94de9d635c9d65684295698aeb4865e 732 Pfam PF06733 DEAD_2 198 263 1.3E-7 T 25-04-2017 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 A4U88_RS21985 b822b0e105ca7179450d99deeda36cb4 135 Pfam PF06146 Phosphate-starvation-inducible E 60 122 1.7E-16 T 25-04-2017 IPR020948 Phosphate-starvation-induced PsiE-like A4U88_RS21985 b822b0e105ca7179450d99deeda36cb4 135 PIRSF PIRSF029598 1 135 9.7E-47 T 25-04-2017 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 A4U88_RS21985 b822b0e105ca7179450d99deeda36cb4 135 Hamap MF_01048 Protein PsiE [psiE]. 1 135 25.389 T 25-04-2017 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 Pfam PF12833 Helix-turn-helix domain 37 111 3.9E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 Gene3D G3DSA:1.10.10.60 65 116 6.5E-19 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 SMART SM00342 28 111 5.2E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 SUPERFAMILY SSF46689 64 112 1.03E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 95 111 1.3E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 80 95 1.3E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 65 107 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS15770 998caa08f506819a8c34ef2670bfaeb8 241 Gene3D G3DSA:1.10.10.60 9 64 5.5E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05850 fad52c9c5055b282b934031909a37844 99 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 95 4.3E-36 T 25-04-2017 IPR024476 Protein of unknown function DUF3861 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 Pfam PF01546 Peptidase family M20/M25/M40 115 429 2.0E-27 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 Gene3D G3DSA:3.30.70.360 230 334 3.1E-26 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 SUPERFAMILY SSF53187 95 243 3.35E-62 T 25-04-2017 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 SUPERFAMILY SSF53187 9 55 3.35E-62 T 25-04-2017 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 SUPERFAMILY SSF53187 342 431 3.35E-62 T 25-04-2017 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 SUPERFAMILY SSF55031 229 336 2.49E-23 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 420 1.1E-111 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 Gene3D G3DSA:3.40.630.10 339 431 4.4E-75 T 25-04-2017 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 Gene3D G3DSA:3.40.630.10 3 55 4.4E-75 T 25-04-2017 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 Gene3D G3DSA:3.40.630.10 94 225 4.4E-75 T 25-04-2017 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 PIRSF PIRSF005962 1 433 9.9E-121 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS20730 b73fb7a10bc83808c75631968e5afe4e 438 Pfam PF07687 Peptidase dimerisation domain 233 316 8.1E-11 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS06290 c0daffef4a56664cf769b406dd605564 88 Gene3D G3DSA:1.10.720.30 14 72 4.2E-33 T 25-04-2017 IPR003034 SAP domain A4U88_RS06290 c0daffef4a56664cf769b406dd605564 88 Pfam PF09905 Uncharacterized conserved protein (DUF2132) 7 68 6.9E-35 T 25-04-2017 IPR018668 DNA-binding protein VF530-like, bacteria GO:0003677 A4U88_RS20620 6ba5f7085b9a1ea855048960a775e1bc 239 Gene3D G3DSA:3.40.50.150 37 192 5.0E-20 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS20620 6ba5f7085b9a1ea855048960a775e1bc 239 SUPERFAMILY SSF53335 17 237 5.16E-44 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS20620 6ba5f7085b9a1ea855048960a775e1bc 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 30.76 T 25-04-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 A4U88_RS20620 6ba5f7085b9a1ea855048960a775e1bc 239 Pfam PF02390 Putative methyltransferase 64 233 4.1E-60 T 25-04-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 A4U88_RS20620 6ba5f7085b9a1ea855048960a775e1bc 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 1.2E-69 T 25-04-2017 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 A4U88_RS04150 49b8759c1eed2aaf852de19c0cd71c09 338 Pfam PF02424 ApbE family 31 307 1.1E-85 T 25-04-2017 IPR024932 Flavin transferase ApbE GO:0017013 A4U88_RS04150 49b8759c1eed2aaf852de19c0cd71c09 338 PIRSF PIRSF006268 5 336 5.3E-92 T 25-04-2017 IPR024932 Flavin transferase ApbE GO:0017013 A4U88_RS04150 49b8759c1eed2aaf852de19c0cd71c09 338 SUPERFAMILY SSF143631 24 334 9.94E-103 T 25-04-2017 IPR003374 ApbE-like domain A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 Gene3D G3DSA:1.10.3660.10 248 372 1.5E-58 T 25-04-2017 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 Gene3D G3DSA:1.20.59.10 3 82 2.3E-22 T 25-04-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 SUPERFAMILY SSF48600 4 88 8.79E-24 T 25-04-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 Gene3D G3DSA:3.40.50.720 83 247 2.0E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 Pfam PF01817 Chorismate mutase type II 9 84 7.4E-20 T 25-04-2017 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 2.4E-44 T 25-04-2017 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 SMART SM00830 9 89 1.3E-30 T 25-04-2017 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 PIRSF PIRSF001499 1 373 1.2E-183 T 25-04-2017 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 SUPERFAMILY SSF48179 241 366 1.47E-42 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 Pfam PF02153 Prephenate dehydrogenase 138 344 4.1E-31 T 25-04-2017 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 A4U88_RS03875 9c90f799756f883a403e296ccb885904 373 SUPERFAMILY SSF51735 91 238 4.33E-40 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 Pfam PF00005 ABC transporter 45 192 4.3E-34 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 Pfam PF00571 CBS domain 347 393 1.4E-6 T 25-04-2017 IPR000644 CBS domain A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 Gene3D G3DSA:3.40.50.300 41 265 3.1E-77 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 Gene3D G3DSA:3.10.580.10 272 395 3.8E-25 T 25-04-2017 A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 SMART SM00382 53 242 7.1E-20 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 SUPERFAMILY SSF54631 275 394 3.01E-15 T 25-04-2017 A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 SUPERFAMILY SSF52540 43 271 1.06E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18985 3f88db3d3380e0eb57bcc3f78b39c75b 400 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 36 394 5.4E-181 T 25-04-2017 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 SUPERFAMILY SSF56784 7 216 5.79E-50 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 1.2E-25 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 4.8E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 4.8E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 4.8E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 4.8E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 Gene3D G3DSA:3.40.50.1000 95 218 2.3E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 Gene3D G3DSA:3.40.50.1000 4 20 2.3E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 Gene3D G3DSA:1.10.150.240 21 91 5.0E-32 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS10395 7cf3ab6650cb6f90e0d2bbf348a9f8a4 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 191 2.0E-12 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 57 127 2.2E-25 T 25-04-2017 IPR001543 Surface presentation of antigen (SpoA) A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 Pfam PF16973 Flagellar motor switch protein FliN N-terminal 1 50 3.9E-24 T 25-04-2017 IPR031576 Flagellar motor switch protein FliN, N-terminal A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 54 129 1.7E-33 T 25-04-2017 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 90 103 2.2E-30 T 25-04-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 103 118 2.2E-30 T 25-04-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 57 73 2.2E-30 T 25-04-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 90 2.2E-30 T 25-04-2017 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 Gene3D G3DSA:2.30.330.10 53 137 2.6E-39 T 25-04-2017 A4U88_RS14380 ab9daec794e1b3f25dfcd7e58815811a 138 SUPERFAMILY SSF101801 55 136 8.63E-27 T 25-04-2017 IPR001543 Surface presentation of antigen (SpoA) A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 Gene3D G3DSA:3.40.50.10410 83 173 6.9E-32 T 25-04-2017 IPR023215 Nitrophenylphosphatase-like domain A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 Gene3D G3DSA:3.40.50.1000 174 247 9.6E-43 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 Gene3D G3DSA:3.40.50.1000 2 79 9.6E-43 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 1.9E-62 T 25-04-2017 IPR006357 HAD-superfamily hydrolase, subfamily IIA A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 2.2E-23 T 25-04-2017 IPR006357 HAD-superfamily hydrolase, subfamily IIA A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 SUPERFAMILY SSF56784 1 247 2.07E-66 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS05770 7d3ea668cb432f842812b27f931a2199 250 Pfam PF13242 HAD-hyrolase-like 174 246 4.5E-21 T 25-04-2017 A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 SUPERFAMILY SSF56784 6 213 8.27E-42 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 Gene3D G3DSA:3.40.50.1000 9 196 4.4E-28 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 1.8E-7 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 1.8E-7 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 1.8E-7 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 181 194 1.8E-7 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 3.3E-9 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS22695 dc1f7953c8052c6576bc22a662fcdf7b 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 9.0E-16 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 25-04-2017 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.1E-18 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.1E-18 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.1E-18 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 25-04-2017 IPR002114 Phosphotransferase system, HPr serine phosphorylation site A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 SUPERFAMILY SSF55594 1 82 9.68E-27 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 7.4E-27 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 Gene3D G3DSA:3.30.1340.10 1 83 1.6E-32 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS17610 2a70713541ac85e1c4630bf5efe1c65b 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 2.7E-30 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS05485 1111c9aba25cf64084735601aee3f021 210 Pfam PF00857 Isochorismatase family 21 173 2.1E-24 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS05485 1111c9aba25cf64084735601aee3f021 210 SUPERFAMILY SSF52499 11 188 2.88E-44 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS05485 1111c9aba25cf64084735601aee3f021 210 Gene3D G3DSA:3.40.50.850 12 196 1.1E-39 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS17795 428f4ed25492478ae42da4aac870eb58 151 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 4 136 8.9E-45 T 25-04-2017 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 A4U88_RS17795 428f4ed25492478ae42da4aac870eb58 151 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 4 136 6.0E-46 T 25-04-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 A4U88_RS17795 428f4ed25492478ae42da4aac870eb58 151 PIRSF PIRSF005384 2 148 4.4E-51 T 25-04-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 A4U88_RS17795 428f4ed25492478ae42da4aac870eb58 151 Gene3D G3DSA:3.40.1400.10 3 138 3.0E-54 T 25-04-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 A4U88_RS17795 428f4ed25492478ae42da4aac870eb58 151 SUPERFAMILY SSF89623 3 138 2.09E-48 T 25-04-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 A4U88_RS17795 428f4ed25492478ae42da4aac870eb58 151 Pfam PF02502 Ribose/Galactose Isomerase 4 137 6.1E-49 T 25-04-2017 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 A4U88_RS21965 2fb2dbc03b856a11c77a5329fd7e2bcf 143 Gene3D G3DSA:3.20.20.80 7 48 6.5E-8 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS21965 2fb2dbc03b856a11c77a5329fd7e2bcf 143 SUPERFAMILY SSF51445 8 49 2.11E-7 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 Gene3D G3DSA:3.40.1160.10 4 258 4.1E-58 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 SUPERFAMILY SSF88697 276 366 8.29E-24 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 SMART SM00359 276 359 4.5E-24 T 25-04-2017 IPR002478 PUA domain GO:0003723 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 SUPERFAMILY SSF53633 6 256 1.28E-65 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 Pfam PF00696 Amino acid kinase family 6 234 1.7E-43 T 25-04-2017 IPR001048 Aspartate/glutamate/uridylate kinase A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 8.6E-57 T 25-04-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 8.6E-57 T 25-04-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 8.6E-57 T 25-04-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 8.6E-57 T 25-04-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 8.6E-57 T 25-04-2017 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 Pfam PF01472 PUA domain 276 350 8.8E-22 T 25-04-2017 IPR002478 PUA domain GO:0003723 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 258 36.022 T 25-04-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 PIRSF PIRSF000729 1 367 1.2E-141 T 25-04-2017 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 Gene3D G3DSA:2.30.130.10 273 365 2.2E-25 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 25-04-2017 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 A4U88_RS04200 3dec5dfe66e7d3acf43bc8752eab8aac 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 1.0E-152 T 25-04-2017 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 25-04-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 Gene3D G3DSA:1.20.1090.10 160 364 2.3E-68 T 25-04-2017 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 346 4.2E-64 T 25-04-2017 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 25-04-2017 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 SUPERFAMILY SSF56796 2 356 2.88E-88 T 25-04-2017 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 PIRSF PIRSF000112 1 360 1.4E-91 T 25-04-2017 A4U88_RS20935 2101e9c79a80699df877d8b6bad5093f 366 Gene3D G3DSA:3.40.50.1970 3 158 4.0E-44 T 25-04-2017 A4U88_RS04775 bd1e60cb547f98314c05b7a2f391e4de 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 6.3E-11 T 25-04-2017 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 A4U88_RS04775 bd1e60cb547f98314c05b7a2f391e4de 200 Pfam PF00578 AhpC/TSA family 5 139 2.9E-35 T 25-04-2017 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 A4U88_RS04775 bd1e60cb547f98314c05b7a2f391e4de 200 Gene3D G3DSA:3.40.30.10 4 194 7.2E-68 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS04775 bd1e60cb547f98314c05b7a2f391e4de 200 SUPERFAMILY SSF52833 1 194 6.53E-65 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS04775 bd1e60cb547f98314c05b7a2f391e4de 200 PIRSF PIRSF000239 1 199 1.6E-57 T 25-04-2017 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 286 308 3.3E-38 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 345 359 3.3E-38 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 424 437 3.3E-38 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 58 77 3.3E-38 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 360 374 3.3E-38 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 SUPERFAMILY SSF56601 23 473 2.68E-101 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 22 468 9.9E-165 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 46 447 3.7E-169 T 25-04-2017 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 A4U88_RS01905 f0dff970b5a240df6b1733121c166cf1 477 Gene3D G3DSA:3.40.710.10 227 471 4.1E-66 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS04550 f63ee36f8fc9f089f178f2ebe02a4602 245 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 242 1.8E-72 T 25-04-2017 IPR018648 Protein of unknown function DUF2076 A4U88_RS24190 8522fa188bfb2ec66a99ff62766d39c4 222 Gene3D G3DSA:1.10.150.240 20 78 1.9E-5 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS24190 8522fa188bfb2ec66a99ff62766d39c4 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 183 2.5E-23 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS24190 8522fa188bfb2ec66a99ff62766d39c4 222 Gene3D G3DSA:3.40.50.1000 2 19 1.2E-32 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS24190 8522fa188bfb2ec66a99ff62766d39c4 222 Gene3D G3DSA:3.40.50.1000 88 213 1.2E-32 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS24190 8522fa188bfb2ec66a99ff62766d39c4 222 SUPERFAMILY SSF56784 4 212 1.38E-46 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS24190 8522fa188bfb2ec66a99ff62766d39c4 222 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 64 182 3.2E-12 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS11960 ee987de85c48b3c7d36bd97b67c0b49a 688 Pfam PF00593 TonB dependent receptor 447 687 5.8E-30 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS11960 ee987de85c48b3c7d36bd97b67c0b49a 688 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 157 3.1E-11 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS11960 ee987de85c48b3c7d36bd97b67c0b49a 688 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 58 688 1.1E-247 T 25-04-2017 IPR010100 TonB-dependent copper receptor A4U88_RS11960 ee987de85c48b3c7d36bd97b67c0b49a 688 Gene3D G3DSA:2.40.170.20 161 688 1.8E-75 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS11960 ee987de85c48b3c7d36bd97b67c0b49a 688 Gene3D G3DSA:2.170.130.10 57 160 1.5E-13 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS11960 ee987de85c48b3c7d36bd97b67c0b49a 688 SUPERFAMILY SSF56935 44 688 1.72E-90 T 25-04-2017 A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 SUPERFAMILY SSF51735 6 155 9.3E-10 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 Gene3D G3DSA:3.40.50.720 5 179 1.8E-30 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 6 289 9.5E-45 T 25-04-2017 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 170 289 7.4E-18 T 25-04-2017 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 SUPERFAMILY SSF48179 170 289 2.89E-21 T 25-04-2017 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 Gene3D G3DSA:1.10.1040.10 180 289 4.2E-21 T 25-04-2017 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 A4U88_RS15885 be47e20675c49e421b520b977d1b89d7 296 Pfam PF02558 Ketopantoate reductase PanE/ApbA 7 149 1.4E-25 T 25-04-2017 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 A4U88_RS16525 7c2b6f4e5877d43f87cd7903d787eaa5 386 Pfam PF13884 Chaperone of endosialidase 282 328 6.9E-5 T 25-04-2017 IPR030392 Intramolecular chaperone auto-processing domain A4U88_RS08540 926afcd71b847291e9914e6a63399afd 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 50.981 T 25-04-2017 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS08540 926afcd71b847291e9914e6a63399afd 172 Gene3D G3DSA:3.10.129.10 2 169 1.8E-61 T 25-04-2017 IPR029069 HotDog domain A4U88_RS08540 926afcd71b847291e9914e6a63399afd 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 171 6.8E-93 T 25-04-2017 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS08540 926afcd71b847291e9914e6a63399afd 172 SUPERFAMILY SSF54637 4 169 9.12E-56 T 25-04-2017 IPR029069 HotDog domain A4U88_RS08540 926afcd71b847291e9914e6a63399afd 172 Pfam PF07977 FabA-like domain 29 158 3.1E-53 T 25-04-2017 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 A4U88_RS08980 98ce1ec230b3f33e533065d4fe6406b8 401 SUPERFAMILY SSF111369 59 248 3.79E-22 T 25-04-2017 A4U88_RS08980 98ce1ec230b3f33e533065d4fe6406b8 401 Gene3D G3DSA:2.40.50.100 190 222 4.9E-17 T 25-04-2017 A4U88_RS08980 98ce1ec230b3f33e533065d4fe6406b8 401 Gene3D G3DSA:2.40.50.100 68 101 4.9E-17 T 25-04-2017 A4U88_RS08980 98ce1ec230b3f33e533065d4fe6406b8 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 388 2.8E-48 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS08980 98ce1ec230b3f33e533065d4fe6406b8 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 57 269 6.0E-16 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 Gene3D G3DSA:3.40.50.300 278 493 2.4E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 Gene3D G3DSA:3.40.50.300 12 242 1.4E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 Pfam PF00005 ABC transporter 279 432 1.0E-21 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 Pfam PF00005 ABC transporter 29 179 4.3E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 SUPERFAMILY SSF52540 264 490 1.47E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 ProSitePatterns PS00211 ABC transporters family signature. 405 419 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 SUPERFAMILY SSF52540 12 239 2.72E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 SMART SM00382 38 227 7.5E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13120 c089c4c43e738b647b0b7c587cd65749 501 SMART SM00382 287 481 3.6E-4 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS17415 f50765b81637fbc36e723baf464cb701 409 Gene3D G3DSA:1.20.1250.20 10 187 1.6E-17 T 25-04-2017 A4U88_RS17415 f50765b81637fbc36e723baf464cb701 409 Gene3D G3DSA:1.20.1250.20 217 391 5.4E-20 T 25-04-2017 A4U88_RS17415 f50765b81637fbc36e723baf464cb701 409 SUPERFAMILY SSF103473 8 393 1.44E-44 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS17415 f50765b81637fbc36e723baf464cb701 409 Pfam PF07690 Major Facilitator Superfamily 219 398 4.8E-17 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 Pfam PF02687 FtsX-like permease family 523 638 8.4E-19 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 Pfam PF12704 MacB-like periplasmic core domain 271 487 2.4E-35 T 25-04-2017 IPR025857 MacB-like periplasmic core domain A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 SUPERFAMILY SSF52540 4 227 5.32E-69 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 Gene3D G3DSA:3.40.50.300 3 224 8.8E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 Pfam PF00005 ABC transporter 24 172 7.2E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 SMART SM00382 33 220 1.4E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08975 fc2438a47fb389580b5d583cb36ab275 645 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 1.3E-162 T 25-04-2017 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 Hamap MF_00492 Transaldolase [tal]. 2 317 51.641 T 25-04-2017 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 25-04-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 25-04-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 SUPERFAMILY SSF51569 1 316 2.09E-116 T 25-04-2017 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 Gene3D G3DSA:3.20.20.70 3 315 1.2E-133 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS03030 5e0cd82bd14b93db3bb682d2a3fa084f 317 Pfam PF00923 Transaldolase 14 313 1.1E-100 T 25-04-2017 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.1E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 SUPERFAMILY SSF53850 89 296 1.21E-46 T 25-04-2017 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 SUPERFAMILY SSF46785 1 85 1.18E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 Gene3D G3DSA:3.40.190.10 176 267 3.9E-35 T 25-04-2017 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 Gene3D G3DSA:1.10.10.10 1 84 4.5E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 Gene3D G3DSA:3.40.190.10 90 175 1.2E-19 T 25-04-2017 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 Pfam PF03466 LysR substrate binding domain 88 293 4.0E-53 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23455 6f89cc92da0081439235e160c8c9fe0b 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07805 d795b1a60296e875bd16d9aaf0d97740 376 Pfam PF00534 Glycosyl transferases group 1 187 347 1.2E-30 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS07805 d795b1a60296e875bd16d9aaf0d97740 376 SUPERFAMILY SSF53756 9 373 2.63E-72 T 25-04-2017 A4U88_RS07805 d795b1a60296e875bd16d9aaf0d97740 376 Pfam PF13439 Glycosyltransferase Family 4 16 175 1.4E-16 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS07805 d795b1a60296e875bd16d9aaf0d97740 376 Gene3D G3DSA:3.40.50.2000 162 346 1.3E-21 T 25-04-2017 A4U88_RS20650 f351c97874550e39374beda0d8de1e2c 160 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 135 1.5E-18 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS20650 f351c97874550e39374beda0d8de1e2c 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 135 9.6E-36 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS20650 f351c97874550e39374beda0d8de1e2c 160 Gene3D G3DSA:2.30.110.20 1 159 4.6E-60 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS20650 f351c97874550e39374beda0d8de1e2c 160 SUPERFAMILY SSF141452 2 159 4.32E-49 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 SUPERFAMILY SSF46689 171 220 9.86E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 Pfam PF12833 Helix-turn-helix domain 193 270 3.4E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 SUPERFAMILY SSF46689 223 272 2.94E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 Gene3D G3DSA:1.10.10.60 170 224 6.3E-16 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 Gene3D G3DSA:2.60.120.280 34 139 2.7E-13 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 SMART SM00342 187 269 2.5E-24 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 Pfam PF02311 AraC-like ligand binding domain 24 151 4.2E-25 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 Gene3D G3DSA:1.10.10.60 225 271 7.9E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12285 a0d59d2957cef9d1d7321ee862e3bb23 275 SUPERFAMILY SSF51215 32 150 5.36E-19 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS13285 9483d312d5a42d7a63617ca3aa8b7a84 133 ProSitePatterns PS00893 Nudix box signature. 37 58 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS13285 9483d312d5a42d7a63617ca3aa8b7a84 133 Gene3D G3DSA:3.90.79.10 4 127 2.2E-32 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS13285 9483d312d5a42d7a63617ca3aa8b7a84 133 Pfam PF00293 NUDIX domain 5 124 1.3E-19 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS13285 9483d312d5a42d7a63617ca3aa8b7a84 133 SUPERFAMILY SSF55811 1 125 4.6E-33 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS13285 9483d312d5a42d7a63617ca3aa8b7a84 133 PRINTS PR00502 NUDIX hydrolase family signature 46 61 1.7E-7 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS13285 9483d312d5a42d7a63617ca3aa8b7a84 133 PRINTS PR00502 NUDIX hydrolase family signature 32 46 1.7E-7 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS00880 fcbbcacb977938e631e8754f446fe834 256 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS00880 fcbbcacb977938e631e8754f446fe834 256 Pfam PF00005 ABC transporter 22 182 1.1E-32 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS00880 fcbbcacb977938e631e8754f446fe834 256 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 254 1.5E-11 T 25-04-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal A4U88_RS00880 fcbbcacb977938e631e8754f446fe834 256 Gene3D G3DSA:3.40.50.300 4 252 1.1E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00880 fcbbcacb977938e631e8754f446fe834 256 SUPERFAMILY SSF52540 5 254 4.67E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00880 fcbbcacb977938e631e8754f446fe834 256 SMART SM00382 31 231 1.1E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS23225 936fb2091d864ee13b90c8ddaa5834ed 164 SUPERFAMILY SSF56524 37 162 1.24E-20 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS23225 936fb2091d864ee13b90c8ddaa5834ed 164 Gene3D G3DSA:3.90.420.10 24 140 3.4E-11 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS23225 936fb2091d864ee13b90c8ddaa5834ed 164 Pfam PF00174 Oxidoreductase molybdopterin binding domain 64 139 1.1E-9 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS01220 4d882955b9d54432919c61f581b2e323 216 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 22 204 8.8E-56 T 25-04-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS01220 4d882955b9d54432919c61f581b2e323 216 Gene3D G3DSA:3.20.20.70 5 209 1.2E-70 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS01220 4d882955b9d54432919c61f581b2e323 216 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 12 209 20.313 T 25-04-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS01220 4d882955b9d54432919c61f581b2e323 216 Pfam PF02581 Thiamine monophosphate synthase/TENI 22 191 2.3E-56 T 25-04-2017 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS01220 4d882955b9d54432919c61f581b2e323 216 SUPERFAMILY SSF51391 5 209 9.16E-66 T 25-04-2017 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS02480 380e76d3a57892d44f724b7ac92c9b54 232 SMART SM00882 8 219 6.3E-86 T 25-04-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 A4U88_RS02480 380e76d3a57892d44f724b7ac92c9b54 232 Gene3D G3DSA:3.40.1080.10 6 218 1.3E-98 T 25-04-2017 A4U88_RS02480 380e76d3a57892d44f724b7ac92c9b54 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 20 35 - T 25-04-2017 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 A4U88_RS02480 380e76d3a57892d44f724b7ac92c9b54 232 Pfam PF01144 Coenzyme A transferase 10 217 6.8E-74 T 25-04-2017 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 A4U88_RS02480 380e76d3a57892d44f724b7ac92c9b54 232 SUPERFAMILY SSF100950 5 227 2.02E-86 T 25-04-2017 A4U88_RS02480 380e76d3a57892d44f724b7ac92c9b54 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 218 5.3E-75 T 25-04-2017 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 Gene3D G3DSA:3.40.710.10 254 610 8.3E-102 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 610 3.7E-238 T 25-04-2017 IPR017790 Penicillin-binding protein 2 GO:0016020 A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 4.6E-46 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 Gene3D G3DSA:3.90.1310.10 131 253 2.5E-39 T 25-04-2017 A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 SUPERFAMILY SSF56601 255 610 2.82E-94 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 SUPERFAMILY SSF56519 57 254 9.94E-52 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS05620 c0871823b147b378bab9758c17f12a3a 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 607 1.9E-83 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS09915 52c3f3600392228356b41d8caf8a6cbe 112 Pfam PF07007 Protein of unknown function (DUF1311) 26 101 1.6E-5 T 25-04-2017 IPR009739 Protein of unknown function DUF1311 A4U88_RS09915 52c3f3600392228356b41d8caf8a6cbe 112 PIRSF PIRSF037256 1 112 1.3E-45 T 25-04-2017 IPR017160 Uncharacterised conserved protein UCP037256 A4U88_RS10260 4303b7e46ee6374f159814bc5d19bc27 167 Pfam PF05229 Spore Coat Protein U domain 23 164 2.1E-36 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS10260 4303b7e46ee6374f159814bc5d19bc27 167 SMART SM00972 109 164 1.4E-21 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS05845 7c0249bf87ad52908431327dfb9ca6c9 212 Pfam PF03551 Transcriptional regulator PadR-like family 60 129 5.2E-18 T 25-04-2017 IPR005149 Transcription regulator PadR, N-terminal A4U88_RS05845 7c0249bf87ad52908431327dfb9ca6c9 212 Gene3D G3DSA:1.10.10.10 47 145 2.4E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05845 7c0249bf87ad52908431327dfb9ca6c9 212 SUPERFAMILY SSF46785 55 170 4.92E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05275 c379245a99ce78738d4c3c9674c7ab2f 94 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 24 84 1.6E-9 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS05275 c379245a99ce78738d4c3c9674c7ab2f 94 Gene3D G3DSA:3.10.20.30 10 93 2.0E-21 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS05275 c379245a99ce78738d4c3c9674c7ab2f 94 SUPERFAMILY SSF54292 22 93 2.36E-19 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS01535 eb6ea79ff9f642e6b8be74cc9d9984b0 114 Pfam PF13698 Domain of unknown function (DUF4156) 22 113 1.6E-33 T 25-04-2017 IPR025294 Protein of unknown function DUF4156 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 Pfam PF04055 Radical SAM superfamily 19 228 1.1E-26 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 SUPERFAMILY SSF54862 15 157 6.64E-8 T 25-04-2017 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 Pfam PF13353 4Fe-4S single cluster domain 12 154 1.5E-11 T 25-04-2017 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 TIGRFAM TIGR02494 PFLE_PFLC: glycyl-radical enzyme activating protein 3 286 2.2E-98 T 25-04-2017 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 SUPERFAMILY SSF102114 126 264 2.16E-17 T 25-04-2017 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 Gene3D G3DSA:3.80.30.10 122 297 5.2E-52 T 25-04-2017 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 ProSitePatterns PS01087 Radical activating enzymes signature. 13 34 - T 25-04-2017 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 A4U88_RS12830 4b5a387e829ac774aa29b151309f8075 299 PIRSF PIRSF000371 1 294 2.6E-88 T 25-04-2017 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 A4U88_RS03090 88f0c03b7e0fa2fd874f6e96402e4ca1 156 Gene3D G3DSA:3.10.50.40 130 150 9.9E-19 T 25-04-2017 A4U88_RS03090 88f0c03b7e0fa2fd874f6e96402e4ca1 156 Gene3D G3DSA:3.10.50.40 8 80 9.9E-19 T 25-04-2017 A4U88_RS03090 88f0c03b7e0fa2fd874f6e96402e4ca1 156 SUPERFAMILY SSF54534 7 143 5.11E-36 T 25-04-2017 A4U88_RS03090 88f0c03b7e0fa2fd874f6e96402e4ca1 156 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 8 85 5.7E-13 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS11415 ecb3ba2aa3115ef34876d317f53628c3 188 Pfam PF02417 Chromate transporter 19 175 2.2E-29 T 25-04-2017 IPR003370 Chromate transporter GO:0015109|GO:0015703 A4U88_RS21680 d7af1039084e89089364dc2f3302e827 401 Gene3D G3DSA:1.20.1250.20 11 195 5.2E-32 T 25-04-2017 A4U88_RS21680 d7af1039084e89089364dc2f3302e827 401 Gene3D G3DSA:1.20.1250.20 215 392 1.2E-11 T 25-04-2017 A4U88_RS21680 d7af1039084e89089364dc2f3302e827 401 Pfam PF07690 Major Facilitator Superfamily 16 348 2.5E-38 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS21680 d7af1039084e89089364dc2f3302e827 401 SUPERFAMILY SSF103473 11 396 2.22E-49 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11580 5a4023e5cd0e4a8fe79b1145c6f773af 45 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 45 15.962 T 25-04-2017 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 A4U88_RS11580 5a4023e5cd0e4a8fe79b1145c6f773af 45 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 43 1.8E-21 T 25-04-2017 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 A4U88_RS15990 5846509eb55e717028768289c3f7d333 140 Gene3D G3DSA:1.10.10.10 27 132 1.4E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15990 5846509eb55e717028768289c3f7d333 140 SUPERFAMILY SSF46785 29 130 1.4E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15990 5846509eb55e717028768289c3f7d333 140 Pfam PF01638 HxlR-like helix-turn-helix 35 116 3.2E-19 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS00920 76284ef1c89146dde5e137c01bacbcf4 318 Pfam PF03547 Membrane transport protein 169 310 1.0E-14 T 25-04-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 A4U88_RS00920 76284ef1c89146dde5e137c01bacbcf4 318 Pfam PF03547 Membrane transport protein 13 154 2.3E-12 T 25-04-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 A4U88_RS20590 5fdce87f9796370e4c66810474e3c601 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 193 9.3E-67 T 25-04-2017 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 A4U88_RS20590 5fdce87f9796370e4c66810474e3c601 197 Gene3D G3DSA:3.90.950.10 1 196 1.2E-81 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS20590 5fdce87f9796370e4c66810474e3c601 197 Pfam PF01725 Ham1 family 4 192 1.3E-56 T 25-04-2017 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 A4U88_RS20590 5fdce87f9796370e4c66810474e3c601 197 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 196 50.403 T 25-04-2017 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 A4U88_RS20590 5fdce87f9796370e4c66810474e3c601 197 SUPERFAMILY SSF52972 1 195 4.19E-73 T 25-04-2017 IPR029001 Inosine triphosphate pyrophosphatase-like A4U88_RS23295 72f3ea606046680c8f72162f33c32dca 679 Pfam PF05170 AsmA family 1 570 5.3E-140 T 25-04-2017 IPR007844 AsmA A4U88_RS17535 450d921ae5cebb2528da3f5ed2cfe29b 528 Gene3D G3DSA:3.90.76.10 32 212 3.2E-45 T 25-04-2017 A4U88_RS17535 450d921ae5cebb2528da3f5ed2cfe29b 528 PIRSF PIRSF002741 16 528 3.1E-110 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS17535 450d921ae5cebb2528da3f5ed2cfe29b 528 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 445 5.9E-97 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS17535 450d921ae5cebb2528da3f5ed2cfe29b 528 Gene3D G3DSA:3.10.105.10 283 497 3.8E-66 T 25-04-2017 A4U88_RS17535 450d921ae5cebb2528da3f5ed2cfe29b 528 SUPERFAMILY SSF53850 22 526 5.98E-149 T 25-04-2017 A4U88_RS13755 efc257b7076716d50ff7ddcadf823470 79 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 49 1.9E-22 T 25-04-2017 IPR005371 Uncharacterised protein family UPF0181 A4U88_RS13755 efc257b7076716d50ff7ddcadf823470 79 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 1.0E-11 T 25-04-2017 IPR005371 Uncharacterised protein family UPF0181 A4U88_RS13755 efc257b7076716d50ff7ddcadf823470 79 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 57 17.369 T 25-04-2017 IPR005371 Uncharacterised protein family UPF0181 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 Gene3D G3DSA:3.40.1030.10 74 327 3.8E-99 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 62 7.6E-15 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 39.367 T 25-04-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 Pfam PF00591 Glycosyl transferase family, a/b domain 74 322 1.2E-99 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 Gene3D G3DSA:1.20.970.10 2 68 4.4E-26 T 25-04-2017 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 SUPERFAMILY SSF52418 70 327 9.68E-94 T 25-04-2017 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 328 1.0E-126 T 25-04-2017 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 A4U88_RS13020 02330c44ffb9feb52cdf876432325f81 332 SUPERFAMILY SSF47648 1 67 1.57E-16 T 25-04-2017 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS23555 67d4a258abbda60c1ae116f96570aaa0 305 PIRSF PIRSF005355 1 305 5.1E-90 T 25-04-2017 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 A4U88_RS23555 67d4a258abbda60c1ae116f96570aaa0 305 Pfam PF01040 UbiA prenyltransferase family 27 273 7.7E-39 T 25-04-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 A4U88_RS23555 67d4a258abbda60c1ae116f96570aaa0 305 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 18 301 1.2E-132 T 25-04-2017 A4U88_RS23555 67d4a258abbda60c1ae116f96570aaa0 305 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 9 302 20.837 T 25-04-2017 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 154 175 6500.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 176 198 1700.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 326 348 550.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 380 401 2700.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 227 262 180.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 271 292 19.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 199 221 0.69 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SMART SM00710 293 315 870.0 T 25-04-2017 IPR006626 Parallel beta-helix repeat A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SUPERFAMILY SSF51126 514 765 1.26E-12 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SUPERFAMILY SSF51126 327 461 9.42E-7 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 Pfam PF13229 Right handed beta helix region 148 248 6.9E-11 T 25-04-2017 A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 Pfam PF13229 Right handed beta helix region 256 385 2.6E-5 T 25-04-2017 A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 SUPERFAMILY SSF51126 71 368 1.17E-25 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 Gene3D G3DSA:3.30.750.60 520 568 5.3E-6 T 25-04-2017 IPR024429 Endosialidase, N-terminal extension domain A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 Gene3D G3DSA:2.160.20.10 94 128 8.7E-9 T 25-04-2017 IPR012334 Pectin lyase fold A4U88_RS06820 f8af8146b05b36d77d674dd8382a836a 943 Gene3D G3DSA:2.160.20.10 190 453 8.7E-9 T 25-04-2017 IPR012334 Pectin lyase fold A4U88_RS06965 049bfd64f023f45454b686e76f3b26ca 214 Gene3D G3DSA:3.40.50.850 5 206 3.1E-44 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS06965 049bfd64f023f45454b686e76f3b26ca 214 Pfam PF00857 Isochorismatase family 12 165 2.4E-22 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS06965 049bfd64f023f45454b686e76f3b26ca 214 SUPERFAMILY SSF52499 3 204 4.71E-47 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS01480 4ad12ee4c9525d3db34667605c8eb645 442 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS01480 4ad12ee4c9525d3db34667605c8eb645 442 Gene3D G3DSA:1.20.1250.20 27 205 8.3E-37 T 25-04-2017 A4U88_RS01480 4ad12ee4c9525d3db34667605c8eb645 442 Pfam PF07690 Major Facilitator Superfamily 32 312 1.5E-38 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS01480 4ad12ee4c9525d3db34667605c8eb645 442 Gene3D G3DSA:1.20.1250.20 261 436 3.1E-18 T 25-04-2017 A4U88_RS01480 4ad12ee4c9525d3db34667605c8eb645 442 SUPERFAMILY SSF103473 10 439 4.58E-81 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 Gene3D G3DSA:3.40.190.10 183 275 2.2E-28 T 25-04-2017 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 Gene3D G3DSA:3.40.190.10 108 182 2.1E-20 T 25-04-2017 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 Pfam PF03466 LysR substrate binding domain 104 302 1.5E-24 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 79 5.8E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 SUPERFAMILY SSF46785 18 95 1.18E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 3.5E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 3.5E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 3.5E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 SUPERFAMILY SSF53850 107 301 7.42E-26 T 25-04-2017 A4U88_RS08730 a61bdf53fa7b754cff4cb540d1572cf2 307 Gene3D G3DSA:1.10.10.10 22 101 5.0E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 17 403 1.0E-114 T 25-04-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 PIRSF PIRSF001235 5 414 9.4E-129 T 25-04-2017 IPR010158 Amidase, carbamoylase-type GO:0008152|GO:0016813 A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 Gene3D G3DSA:3.40.630.10 5 228 4.1E-103 T 25-04-2017 A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 Gene3D G3DSA:3.40.630.10 354 413 4.1E-103 T 25-04-2017 A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 SUPERFAMILY SSF53187 339 411 1.51E-75 T 25-04-2017 A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 SUPERFAMILY SSF53187 10 226 1.51E-75 T 25-04-2017 A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 SUPERFAMILY SSF55031 216 326 1.62E-26 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 Gene3D G3DSA:3.30.70.360 229 328 1.1E-34 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 Pfam PF07687 Peptidase dimerisation domain 215 314 5.5E-7 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS04055 0987b765cbeb74d303a22c58a667f628 414 Pfam PF01546 Peptidase family M20/M25/M40 80 408 1.6E-25 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS20895 db4eeb38515df12af39dc551bad730e3 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 6.0E-23 T 25-04-2017 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 A4U88_RS20895 db4eeb38515df12af39dc551bad730e3 275 SUPERFAMILY SSF56300 16 273 1.36E-61 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS20895 db4eeb38515df12af39dc551bad730e3 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 207 5.5E-20 T 25-04-2017 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 A4U88_RS20895 db4eeb38515df12af39dc551bad730e3 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 40.805 T 25-04-2017 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 A4U88_RS20895 db4eeb38515df12af39dc551bad730e3 275 Gene3D G3DSA:3.60.21.10 15 262 2.6E-40 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 314 4.6E-38 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 SUPERFAMILY SSF51905 2 326 3.35E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 156 174 2.7E-10 T 25-04-2017 A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.7E-10 T 25-04-2017 A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 2.7E-10 T 25-04-2017 A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 Gene3D G3DSA:3.50.50.60 2 109 1.7E-14 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS17945 db7f85e108df53254cf333a1d342627e 402 Gene3D G3DSA:3.50.50.60 110 254 1.2E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03105 5a0e24ac3dbba419fdeddf6e6319f711 322 PIRSF PIRSF037196 1 322 1.3E-157 T 25-04-2017 IPR017133 Pyoverdine chromophore biosynthesis protein PvcA A4U88_RS03105 5a0e24ac3dbba419fdeddf6e6319f711 322 Pfam PF05141 Pyoverdine/dityrosine biosynthesis protein 47 303 6.2E-81 T 25-04-2017 IPR007817 Pyoverdine biosynthesis A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 12 32 - T 25-04-2017 IPR019776 Flagellar basal body rod protein, conserved site A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 Pfam PF00460 Flagella basal body rod protein 6 35 7.3E-9 T 25-04-2017 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 343 1.7E-78 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 SUPERFAMILY SSF64518 115 547 7.45E-49 T 25-04-2017 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 157 181 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 443 462 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 124 144 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 259 281 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 216 234 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 468 489 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 515 539 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 PRINTS PR01005 Flagellar hook-associated protein signature 359 381 4.1E-75 T 25-04-2017 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 A4U88_RS14415 03bde16beb049a797b08944ce091af7a 549 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 488 548 6.9E-9 T 25-04-2017 IPR010930 Flagellar basal-body/hook protein, C-terminal domain A4U88_RS13770 5cca806e14ede7dde2b5f0012d0c6bed 192 Pfam PF00293 NUDIX domain 32 145 1.6E-12 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS13770 5cca806e14ede7dde2b5f0012d0c6bed 192 Gene3D G3DSA:3.90.79.10 30 189 5.3E-37 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS13770 5cca806e14ede7dde2b5f0012d0c6bed 192 ProSitePatterns PS01293 Nudix CoA signature. 49 69 - T 25-04-2017 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918 A4U88_RS13770 5cca806e14ede7dde2b5f0012d0c6bed 192 SUPERFAMILY SSF55811 28 187 4.47E-31 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS14215 67b89355583a838fec4c5420f953a8aa 367 Pfam PF01699 Sodium/calcium exchanger protein 43 193 1.0E-13 T 25-04-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 A4U88_RS14215 67b89355583a838fec4c5420f953a8aa 367 Pfam PF01699 Sodium/calcium exchanger protein 224 365 5.6E-9 T 25-04-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 A4U88_RS14215 67b89355583a838fec4c5420f953a8aa 367 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 12 366 5.7E-106 T 25-04-2017 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 A4U88_RS00070 be3c55f24b6a449ae2dbb453c01c9b9c 73 Pfam PF01402 Ribbon-helix-helix protein, copG family 3 40 3.1E-7 T 25-04-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 A4U88_RS19640 32e2334fecf54d77deeef53af17c2ceb 173 Pfam PF00419 Fimbrial protein 28 173 2.3E-13 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS19640 32e2334fecf54d77deeef53af17c2ceb 173 SUPERFAMILY SSF49401 27 173 2.19E-32 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS19640 32e2334fecf54d77deeef53af17c2ceb 173 Gene3D G3DSA:2.60.40.1090 26 173 7.9E-36 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 SUPERFAMILY SSF103473 9 387 5.1E-55 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 Pfam PF07690 Major Facilitator Superfamily 17 319 9.3E-38 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 Gene3D G3DSA:1.20.1250.20 199 384 1.1E-16 T 25-04-2017 A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 Gene3D G3DSA:1.20.1250.20 13 187 1.8E-25 T 25-04-2017 A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 PRINTS PR01035 Tetracycline resistance protein signature 141 163 3.0E-5 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 PRINTS PR01035 Tetracycline resistance protein signature 272 293 3.0E-5 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS08790 1a1414a8d38aee932d1acd92d1f5a9d1 390 PRINTS PR01035 Tetracycline resistance protein signature 48 67 3.0E-5 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.348 T 25-04-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 14 505 6.2E-233 T 25-04-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 SUPERFAMILY SSF50249 13 155 6.12E-47 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 Gene3D G3DSA:3.30.930.10 157 500 9.7E-124 T 25-04-2017 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 SUPERFAMILY SSF55681 162 502 1.99E-124 T 25-04-2017 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.6E-39 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.6E-39 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.6E-39 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.6E-39 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.6E-39 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 2.6E-85 T 25-04-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 Gene3D G3DSA:2.40.50.140 16 154 6.0E-49 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 1.4E-15 T 25-04-2017 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 A4U88_RS19835 e36aeb742a4b66330ec5be8cbc77573b 505 PIRSF PIRSF039101 1 505 1.1E-203 T 25-04-2017 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 Pfam PF09339 IclR helix-turn-helix domain 13 59 3.6E-14 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 SUPERFAMILY SSF55781 79 247 2.22E-36 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 SMART SM00346 10 96 2.6E-14 T 25-04-2017 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 Pfam PF01614 Bacterial transcriptional regulator 123 244 4.3E-21 T 25-04-2017 IPR014757 Transcription regulator IclR, C-terminal A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 SUPERFAMILY SSF46785 11 79 1.07E-11 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 Gene3D G3DSA:3.30.450.40 80 247 5.0E-42 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS12090 0edab745e2fef1f50343012199af3a09 248 Gene3D G3DSA:1.10.10.10 4 77 1.1E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16250 0b7eb0e33c8b52b66d257564671b7564 455 PIRSF PIRSF006060 7 453 1.3E-74 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS16250 0b7eb0e33c8b52b66d257564671b7564 455 Pfam PF00324 Amino acid permease 27 427 3.0E-36 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 Gene3D G3DSA:3.40.50.970 3 176 2.0E-42 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 SMART SM00861 2 167 1.4E-30 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 Pfam PF02779 Transketolase, pyrimidine binding domain 3 164 9.0E-24 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 SUPERFAMILY SSF52922 171 298 5.1E-19 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 SUPERFAMILY SSF52518 4 168 5.89E-39 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 Gene3D G3DSA:3.40.50.920 177 298 2.3E-18 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS12915 eb5b520964b46e2d2abbbb039b5b3d75 301 Pfam PF02780 Transketolase, C-terminal domain 178 293 1.6E-13 T 25-04-2017 IPR033248 Transketolase, C-terminal domain A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 Gene3D G3DSA:1.20.1270.20 159 231 4.8E-22 T 25-04-2017 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 SUPERFAMILY SSF56821 1 548 1.47E-186 T 25-04-2017 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 Gene3D G3DSA:3.40.50.2030 380 546 1.1E-68 T 25-04-2017 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 Gene3D G3DSA:3.40.50.2030 234 379 2.6E-64 T 25-04-2017 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 Pfam PF03063 Prismane/CO dehydrogenase family 1 544 5.1E-156 T 25-04-2017 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 20.654 T 25-04-2017 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 Gene3D G3DSA:1.20.1270.20 1 158 1.0E-36 T 25-04-2017 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 547 3.2E-236 T 25-04-2017 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS08170 58ef55514f24609aa12cca6653626b14 549 PIRSF PIRSF000076 1 549 2.3E-235 T 25-04-2017 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 SUPERFAMILY SSF56042 171 342 1.5E-63 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 Gene3D G3DSA:3.30.1330.10 22 170 9.0E-64 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 335 2.2E-153 T 25-04-2017 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 SUPERFAMILY SSF55326 7 170 2.09E-53 T 25-04-2017 A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 176 340 6.7E-39 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 344 47.222 T 25-04-2017 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 164 4.3E-16 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS17990 fa98b98bf5b8808e8912b989c4ea15a8 345 Gene3D G3DSA:3.90.650.10 171 343 6.7E-69 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Gene3D G3DSA:3.40.50.300 5 102 1.6E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Gene3D G3DSA:3.40.50.300 136 282 1.6E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 SUPERFAMILY SSF52540 311 501 3.9E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Gene3D G3DSA:3.40.50.300 318 540 5.6E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Pfam PF16326 ABC transporter C-terminal domain 561 630 3.2E-21 T 25-04-2017 IPR032524 ABC transporter Uup, C-terminal GO:0003677 A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 SMART SM00382 28 230 7.1E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 SMART SM00382 344 514 3.5E-12 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Pfam PF12848 ABC transporter 224 299 3.7E-10 T 25-04-2017 IPR032781 ABC-transporter extension domain A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Pfam PF00005 ABC transporter 337 469 5.9E-24 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 Pfam PF00005 ABC transporter 19 185 9.2E-21 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 SUPERFAMILY SSF52540 126 245 7.71E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08500 d754a88dafa583263fd1985a51441c94 634 SUPERFAMILY SSF52540 4 94 7.71E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 SUPERFAMILY SSF52172 7 182 1.76E-38 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 Gene3D G3DSA:3.40.50.2300 5 151 3.2E-38 T 25-04-2017 A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 SMART SM00862 151 227 4.6E-26 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 Gene3D G3DSA:1.10.10.10 152 230 4.2E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 Pfam PF00072 Response regulator receiver domain 10 118 4.1E-25 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 3.8E-23 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS18110 66d54dda8a6dc8d7a46b8eefc76fdac8 238 SMART SM00448 8 118 9.4E-38 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 Gene3D G3DSA:3.40.50.620 14 216 1.1E-61 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 21 242 4.7E-96 T 25-04-2017 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 PIRSF PIRSF000857 7 244 3.2E-55 T 25-04-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 33 243 1.4E-90 T 25-04-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 48 219 1.8E-49 T 25-04-2017 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 9 243 39.788 T 25-04-2017 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 A4U88_RS03595 1c8826e76e5ce2b4aa1e3ef6c0ad7378 244 SUPERFAMILY SSF52402 21 208 4.95E-53 T 25-04-2017 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 SMART SM00729 84 293 7.1E-17 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 PIRSF PIRSF005963 2 321 3.3E-131 T 25-04-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 Pfam PF04055 Radical SAM superfamily 91 251 1.9E-15 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 27 73 6.5E-7 T 25-04-2017 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 157.573 T 25-04-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 SUPERFAMILY SSF102114 52 316 1.96E-67 T 25-04-2017 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 6.0E-161 T 25-04-2017 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 A4U88_RS05590 c760c9c7fefdcfbab1297b9478c1506c 321 Gene3D G3DSA:3.20.20.70 55 312 1.1E-71 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS01050 38c0fe172662a1177776a2ff605fdb23 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 57.899 T 25-04-2017 IPR022846 Xaa-Pro dipeptidase GO:0016795 A4U88_RS01050 38c0fe172662a1177776a2ff605fdb23 443 Gene3D G3DSA:3.90.230.10 161 437 2.1E-51 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS01050 38c0fe172662a1177776a2ff605fdb23 443 Pfam PF00557 Metallopeptidase family M24 168 430 1.6E-44 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS01050 38c0fe172662a1177776a2ff605fdb23 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 25-04-2017 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site A4U88_RS01050 38c0fe172662a1177776a2ff605fdb23 443 SUPERFAMILY SSF55920 163 438 1.31E-54 T 25-04-2017 IPR000994 Peptidase M24, structural domain A4U88_RS19730 0f073b31e515d705be63a933098a510b 514 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 58 505 1.1E-145 T 25-04-2017 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 A4U88_RS19730 0f073b31e515d705be63a933098a510b 514 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 20 505 5.6E-171 T 25-04-2017 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 A4U88_RS19730 0f073b31e515d705be63a933098a510b 514 ProSitePatterns PS01303 BCCT family of transporters signature. 321 330 - T 25-04-2017 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS21470 ab6b5a40dbd776c9d816735df478dc8f 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 237 1.3E-121 T 25-04-2017 IPR020042 Protein of unknown function DUF4311 A4U88_RS21470 ab6b5a40dbd776c9d816735df478dc8f 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 3.1E-151 T 25-04-2017 IPR020042 Protein of unknown function DUF4311 A4U88_RS23850 090e380388cc23d566ce4dca1b205778 205 Pfam PF03458 UPF0126 domain 91 164 3.6E-21 T 25-04-2017 IPR005115 Uncharacterised domain UPF0126 A4U88_RS23850 090e380388cc23d566ce4dca1b205778 205 Pfam PF03458 UPF0126 domain 5 78 3.2E-19 T 25-04-2017 IPR005115 Uncharacterised domain UPF0126 A4U88_RS16185 1287fb6ccb14b0bd2a9152423f154fe8 305 SUPERFAMILY SSF53822 15 301 9.6E-72 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS16185 1287fb6ccb14b0bd2a9152423f154fe8 305 Pfam PF13407 Periplasmic binding protein domain 31 276 7.0E-53 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS16185 1287fb6ccb14b0bd2a9152423f154fe8 305 Gene3D G3DSA:3.40.50.2300 146 301 4.0E-43 T 25-04-2017 A4U88_RS16185 1287fb6ccb14b0bd2a9152423f154fe8 305 Gene3D G3DSA:3.40.50.2300 27 145 5.9E-43 T 25-04-2017 A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 Gene3D G3DSA:3.40.640.10 17 254 1.1E-98 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 Gene3D G3DSA:3.90.1150.10 255 375 4.1E-52 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 25-04-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 Pfam PF00266 Aminotransferase class-V 5 368 1.1E-88 T 25-04-2017 IPR000192 Aminotransferase class V domain A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 SUPERFAMILY SSF53383 5 390 6.05E-116 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 56.088 T 25-04-2017 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 PIRSF PIRSF005572 2 384 2.9E-144 T 25-04-2017 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 A4U88_RS18450 05aed659cdcc4349b29442a604417868 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 2.5E-234 T 25-04-2017 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 216 5.3E-18 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 Pfam PF00072 Response regulator receiver domain 3 112 1.8E-19 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 Gene3D G3DSA:1.10.10.10 124 218 2.8E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 Gene3D G3DSA:3.40.50.2300 2 119 1.4E-28 T 25-04-2017 A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 SMART SM00862 145 216 4.4E-21 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 SMART SM00448 1 112 2.4E-26 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS19970 0afa9ee4779431afa1dc8946f57c78e8 219 SUPERFAMILY SSF52172 2 170 4.23E-32 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS11720 700e86e0a390d76438fc01962ae93d9d 306 SUPERFAMILY SSF53850 54 288 3.86E-42 T 25-04-2017 A4U88_RS11720 700e86e0a390d76438fc01962ae93d9d 306 Gene3D G3DSA:3.40.190.10 55 136 2.4E-22 T 25-04-2017 A4U88_RS11720 700e86e0a390d76438fc01962ae93d9d 306 Gene3D G3DSA:3.40.190.10 251 291 2.4E-22 T 25-04-2017 A4U88_RS11720 700e86e0a390d76438fc01962ae93d9d 306 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 66 288 6.3E-38 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS11720 700e86e0a390d76438fc01962ae93d9d 306 SMART SM00062 57 291 1.9E-24 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS11720 700e86e0a390d76438fc01962ae93d9d 306 Gene3D G3DSA:3.40.190.10 137 247 7.8E-25 T 25-04-2017 A4U88_RS09500 08eb24581c4ef0544218178e9743315e 239 Pfam PF00072 Response regulator receiver domain 4 117 6.7E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS09500 08eb24581c4ef0544218178e9743315e 239 Gene3D G3DSA:3.40.50.2300 1 129 6.5E-28 T 25-04-2017 A4U88_RS09500 08eb24581c4ef0544218178e9743315e 239 SUPERFAMILY SSF46785 172 229 4.36E-5 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09500 08eb24581c4ef0544218178e9743315e 239 PIRSF PIRSF006171 1 228 1.5E-80 T 25-04-2017 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 A4U88_RS09500 08eb24581c4ef0544218178e9743315e 239 SUPERFAMILY SSF52172 1 151 7.54E-32 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS09500 08eb24581c4ef0544218178e9743315e 239 SMART SM00448 2 117 2.6E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 Gene3D G3DSA:1.10.10.10 2 58 5.3E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 SMART SM00344 7 114 2.4E-44 T 25-04-2017 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 25-04-2017 IPR019885 Transcription regulator HTH, AsnC-type, conserved site A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 8 54 2.0E-13 T 25-04-2017 A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 1.6E-11 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 1.6E-11 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 1.6E-11 T 25-04-2017 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.1E-17 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 SUPERFAMILY SSF46785 5 67 1.14E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 Gene3D G3DSA:3.30.70.920 60 141 9.5E-24 T 25-04-2017 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain A4U88_RS24075 09dac49c167c064e3cc954c6855884fb 153 SUPERFAMILY SSF54909 68 153 2.28E-19 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS20490 263ab41bb738d33263ac8bdc12b63cf2 458 PIRSF PIRSF006060 1 453 4.4E-74 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS20490 263ab41bb738d33263ac8bdc12b63cf2 458 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS20490 263ab41bb738d33263ac8bdc12b63cf2 458 Pfam PF00324 Amino acid permease 18 450 1.1E-116 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 SUPERFAMILY SSF81301 82 239 6.43E-41 T 25-04-2017 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 Gene3D G3DSA:1.10.3090.10 243 480 7.2E-50 T 25-04-2017 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 Gene3D G3DSA:3.30.460.10 93 242 1.3E-51 T 25-04-2017 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 270 330 9.7E-19 T 25-04-2017 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 44 511 38.941 T 25-04-2017 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 Pfam PF12626 Polymerase A arginine-rich C-terminus 388 508 2.2E-43 T 25-04-2017 IPR025866 Polymerase A arginine-rich C-terminal domain A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 80 511 3.2E-162 T 25-04-2017 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 SUPERFAMILY SSF81891 241 479 2.35E-49 T 25-04-2017 A4U88_RS20380 61f3d086399e0a15a86bfb88a6a47ebb 515 Pfam PF01743 Poly A polymerase head domain 111 243 3.5E-41 T 25-04-2017 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 A4U88_RS02875 8175247c25bc47f654841f3716e9dbb9 425 Pfam PF07670 Nucleoside recognition 99 195 2.1E-8 T 25-04-2017 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 A4U88_RS02875 8175247c25bc47f654841f3716e9dbb9 425 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 2.6E-23 T 25-04-2017 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 A4U88_RS02875 8175247c25bc47f654841f3716e9dbb9 425 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 422 1.0E-76 T 25-04-2017 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 A4U88_RS02875 8175247c25bc47f654841f3716e9dbb9 425 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 422 5.6E-154 T 25-04-2017 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 A4U88_RS01515 59f24597dcb5e60eb99ab808e6bc91ab 162 Pfam PF04186 FxsA cytoplasmic membrane protein 8 109 1.3E-32 T 25-04-2017 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 A4U88_RS19860 0d766b4f377a0af34afe5dae5fd8a4b7 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 25-04-2017 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 A4U88_RS19860 0d766b4f377a0af34afe5dae5fd8a4b7 172 Pfam PF00258 Flavodoxin 5 160 7.3E-27 T 25-04-2017 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 A4U88_RS19860 0d766b4f377a0af34afe5dae5fd8a4b7 172 PIRSF PIRSF038996 1 170 7.5E-54 T 25-04-2017 IPR010086 Flavodoxin, long chain GO:0010181 A4U88_RS19860 0d766b4f377a0af34afe5dae5fd8a4b7 172 Gene3D G3DSA:3.40.50.360 1 168 1.7E-54 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS19860 0d766b4f377a0af34afe5dae5fd8a4b7 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 8.4E-71 T 25-04-2017 IPR010086 Flavodoxin, long chain GO:0010181 A4U88_RS19860 0d766b4f377a0af34afe5dae5fd8a4b7 172 SUPERFAMILY SSF52218 1 166 2.02E-46 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS17680 20d86f91af1f8c31f42af63b7116ad71 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 49.277 T 25-04-2017 IPR023072 Acetyltransferase, YpeA GO:0016747 A4U88_RS17680 20d86f91af1f8c31f42af63b7116ad71 141 Gene3D G3DSA:3.40.630.30 1 123 7.1E-36 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17680 20d86f91af1f8c31f42af63b7116ad71 141 Pfam PF00583 Acetyltransferase (GNAT) family 48 124 1.6E-16 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS17680 20d86f91af1f8c31f42af63b7116ad71 141 SUPERFAMILY SSF55729 1 129 4.76E-31 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17680 20d86f91af1f8c31f42af63b7116ad71 141 PIRSF PIRSF037663 1 136 2.0E-12 T 25-04-2017 IPR017255 Acetyltransferase, GNAT, predicted A4U88_RS16060 12c5887aa878bc7c1d13f48dc6771873 374 Gene3D G3DSA:3.40.630.30 195 368 2.8E-6 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS16060 12c5887aa878bc7c1d13f48dc6771873 374 SUPERFAMILY SSF55729 139 371 2.09E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS16060 12c5887aa878bc7c1d13f48dc6771873 374 SUPERFAMILY SSF55729 5 111 2.09E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 SUPERFAMILY SSF49354 30 147 4.97E-39 T 25-04-2017 IPR008962 PapD-like A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 Gene3D G3DSA:2.60.40.1070 152 244 6.7E-29 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 Gene3D G3DSA:2.60.40.360 30 147 7.1E-45 T 25-04-2017 IPR008962 PapD-like A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 105 122 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 SUPERFAMILY SSF49584 155 245 2.88E-25 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 PRINTS PR00969 Pili chaperone signature 106 123 1.3E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 PRINTS PR00969 Pili chaperone signature 30 39 1.3E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 PRINTS PR00969 Pili chaperone signature 76 97 1.3E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 PRINTS PR00969 Pili chaperone signature 129 144 1.3E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 PRINTS PR00969 Pili chaperone signature 166 181 1.3E-33 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 171 232 2.5E-16 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS01435 8850b52a00a50a46742212f32cd38eaa 252 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 30 147 2.0E-38 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 Gene3D G3DSA:1.10.10.10 136 233 1.1E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 SMART SM00862 156 232 1.6E-14 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 Gene3D G3DSA:3.40.50.2300 2 122 1.8E-35 T 25-04-2017 A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 4.1E-18 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 SUPERFAMILY SSF46894 137 234 2.64E-21 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 SMART SM00448 4 114 2.5E-38 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 SUPERFAMILY SSF52172 2 127 1.2E-35 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS02990 5d33782a2834c0360ee8d12a3f21fabc 238 Pfam PF00072 Response regulator receiver domain 6 113 5.5E-27 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 6.3E-71 T 25-04-2017 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 SUPERFAMILY SSF100950 1 146 7.33E-48 T 25-04-2017 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 Gene3D G3DSA:3.30.70.260 137 196 3.5E-29 T 25-04-2017 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 SUPERFAMILY SSF75445 127 198 7.19E-24 T 25-04-2017 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 Gene3D G3DSA:3.40.50.1360 1 136 5.8E-59 T 25-04-2017 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.347 T 25-04-2017 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 A4U88_RS20045 bac2e76ec080de5169960f5cb00652fa 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.3E-58 T 25-04-2017 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 A4U88_RS10230 818ff2e7540b51e46efc00658ab6e179 199 Pfam PF12385 Papain-like cysteine protease AvrRpt2 46 172 1.8E-4 T 25-04-2017 IPR022118 Peptidase C70, AvrRpt2 A4U88_RS03380 43eedc6a2e876bbcd1f7b1672a55005b 283 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 25 254 25.492 T 25-04-2017 IPR026579 Cell division protein FtsQ GO:0090529 A4U88_RS03380 43eedc6a2e876bbcd1f7b1672a55005b 283 Pfam PF03799 Cell division protein FtsQ 129 246 1.2E-25 T 25-04-2017 IPR005548 Cell division protein FtsQ/DivIB A4U88_RS03380 43eedc6a2e876bbcd1f7b1672a55005b 283 Pfam PF08478 POTRA domain, FtsQ-type 56 125 6.4E-22 T 25-04-2017 IPR013685 Polypeptide-transport-associated, FtsQ-type A4U88_RS03420 5d315dc3243a57a243023506eb6f043c 63 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 57 19.137 T 25-04-2017 IPR005584 DNA gyrase inhibitor YacG GO:0008270 A4U88_RS03420 5d315dc3243a57a243023506eb6f043c 63 Pfam PF03884 Domain of unknown function (DUF329) 5 54 2.4E-25 T 25-04-2017 IPR005584 DNA gyrase inhibitor YacG GO:0008270 A4U88_RS03420 5d315dc3243a57a243023506eb6f043c 63 Gene3D G3DSA:3.30.50.10 2 60 4.7E-27 T 25-04-2017 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 A4U88_RS03420 5d315dc3243a57a243023506eb6f043c 63 SUPERFAMILY SSF57716 2 61 1.57E-22 T 25-04-2017 A4U88_RS23105 4757ebe494247639709702e747bdda57 330 SUPERFAMILY SSF51556 7 325 2.01E-64 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS23105 4757ebe494247639709702e747bdda57 330 Gene3D G3DSA:3.20.20.140 6 326 4.8E-85 T 25-04-2017 A4U88_RS23105 4757ebe494247639709702e747bdda57 330 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 9 324 1.8E-79 T 25-04-2017 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 A4U88_RS23105 4757ebe494247639709702e747bdda57 330 Pfam PF00962 Adenosine/AMP deaminase 8 323 9.8E-61 T 25-04-2017 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 A4U88_RS09300 454172312cc401fad2fa5ba9bd70ac4b 339 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 1 328 47.893 T 25-04-2017 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 A4U88_RS09300 454172312cc401fad2fa5ba9bd70ac4b 339 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 230 247 - T 25-04-2017 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 A4U88_RS09300 454172312cc401fad2fa5ba9bd70ac4b 339 Gene3D G3DSA:3.20.20.300 1 326 1.3E-96 T 25-04-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 A4U88_RS09300 454172312cc401fad2fa5ba9bd70ac4b 339 SUPERFAMILY SSF51445 1 315 8.74E-85 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS09300 454172312cc401fad2fa5ba9bd70ac4b 339 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 7 313 2.8E-97 T 25-04-2017 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 Gene3D G3DSA:2.160.20.20 502 763 3.8E-4 T 25-04-2017 IPR012332 P22 tailspike C-terminal domain-like A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 SUPERFAMILY SSF69279 186 361 3.23E-43 T 25-04-2017 A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 19 502 1.5E-141 T 25-04-2017 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 Gene3D G3DSA:3.55.50.10 96 187 1.1E-35 T 25-04-2017 A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 Pfam PF05954 Phage late control gene D protein (GPD) 25 328 1.7E-92 T 25-04-2017 A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 SUPERFAMILY SSF69255 361 449 1.1E-31 T 25-04-2017 A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 Gene3D G3DSA:2.40.50.230 367 449 6.3E-38 T 25-04-2017 IPR006531 Gp5 N-terminal A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 7 519 1.3E-181 T 25-04-2017 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 SUPERFAMILY SSF69349 439 632 1.02E-32 T 25-04-2017 A4U88_RS14600 d46d722396cc8076d3a5b8149cc9268f 779 SUPERFAMILY SSF69279 8 181 2.47E-56 T 25-04-2017 A4U88_RS09595 07bad043ffa9af11666ec25d7e4842d4 182 SUPERFAMILY SSF51366 6 59 2.2E-8 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS09595 07bad043ffa9af11666ec25d7e4842d4 182 Gene3D G3DSA:3.20.20.70 6 59 1.8E-11 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS09595 07bad043ffa9af11666ec25d7e4842d4 182 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 6 57 2.1E-6 T 25-04-2017 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 A4U88_RS04095 e76a5d2e545ac5cfbf6573ec8084250f 50 ProSitePatterns PS00556 Hok/gef family cell toxic proteins signature. 10 29 - T 25-04-2017 IPR018084 Hok/gef cell toxic protein, conserved site GO:0016020 A4U88_RS04095 e76a5d2e545ac5cfbf6573ec8084250f 50 Pfam PF01848 Hok/gef family 6 46 8.1E-19 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS04095 e76a5d2e545ac5cfbf6573ec8084250f 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 25 47 2.1E-13 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS04095 e76a5d2e545ac5cfbf6573ec8084250f 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 5 23 2.1E-13 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS04095 e76a5d2e545ac5cfbf6573ec8084250f 50 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 1 48 1.0E-9 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS06200 687bfa58ef54154518cc11410fa44958 49 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 47 7.4E-29 T 25-04-2017 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 A4U88_RS06200 687bfa58ef54154518cc11410fa44958 49 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 46 19.004 T 25-04-2017 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 ProSitePatterns PS00942 glpT family of transporters signature. 151 167 - T 25-04-2017 IPR021159 Glycerate/sugar phosphate transporter, conserved site GO:0005215|GO:0006810|GO:0016021 Reactome: R-HSA-3229133|Reactome: R-HSA-70153 A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 36 413 2.0E-143 T 25-04-2017 A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 Gene3D G3DSA:1.20.1250.20 243 434 6.1E-39 T 25-04-2017 A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 Gene3D G3DSA:1.20.1250.20 23 210 1.6E-52 T 25-04-2017 A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 Pfam PF07690 Major Facilitator Superfamily 36 396 8.5E-51 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 SUPERFAMILY SSF103473 17 432 1.27E-81 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00405 2224ef57419407f5eb8fa1aa39dcff49 443 PIRSF PIRSF002808 6 443 6.8E-145 T 25-04-2017 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 A4U88_RS13860 ad4690a069753af97cc9a1e488b1ada8 135 Gene3D G3DSA:3.10.180.10 1 123 2.6E-30 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS13860 ad4690a069753af97cc9a1e488b1ada8 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 112 2.7E-10 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS13860 ad4690a069753af97cc9a1e488b1ada8 135 SUPERFAMILY SSF54593 1 129 1.29E-29 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS10670 38eebd1f241fd3ff8274628dc01053ac 123 Gene3D G3DSA:2.60.300.12 19 112 2.4E-29 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS10670 38eebd1f241fd3ff8274628dc01053ac 123 TIGRFAM TIGR01997 sufA_proteo: FeS assembly scaffold SufA 18 123 4.3E-42 T 25-04-2017 IPR011298 FeS assembly scaffold SufA GO:0016226 A4U88_RS10670 38eebd1f241fd3ff8274628dc01053ac 123 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 1.6E-18 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS10670 38eebd1f241fd3ff8274628dc01053ac 123 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 19 122 3.7E-33 T 25-04-2017 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 A4U88_RS10670 38eebd1f241fd3ff8274628dc01053ac 123 SUPERFAMILY SSF89360 19 112 2.35E-27 T 25-04-2017 IPR000361 FeS cluster biogenesis A4U88_RS10670 38eebd1f241fd3ff8274628dc01053ac 123 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 25-04-2017 IPR017870 FeS cluster insertion, C-terminal, conserved site A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 Gene3D G3DSA:2.40.50.100 260 293 4.2E-17 T 25-04-2017 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 Gene3D G3DSA:2.40.50.100 68 101 4.2E-17 T 25-04-2017 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 274 295 1.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 79 99 1.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 390 405 1.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 405 425 1.3E-9 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 Pfam PF13437 HlyD family secretion protein 263 393 9.4E-13 T 25-04-2017 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 ProSitePatterns PS00543 HlyD family secretion proteins signature. 390 412 - T 25-04-2017 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 A4U88_RS11250 bbdedabeba58ca23d15e4c9ca89c0031 428 Pfam PF13533 Biotin-lipoyl like 68 104 1.9E-5 T 25-04-2017 A4U88_RS11225 1fdaf67b8601a338210cc54bfd06c796 173 SUPERFAMILY SSF55729 11 159 4.95E-29 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS11225 1fdaf67b8601a338210cc54bfd06c796 173 Pfam PF13302 Acetyltransferase (GNAT) domain 15 150 5.9E-20 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS11225 1fdaf67b8601a338210cc54bfd06c796 173 Gene3D G3DSA:3.40.630.30 7 170 1.4E-30 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS23650 0e24ecdaa9001b0a0cbbc4009871ab72 257 SMART SM00880 6 247 4.5E-27 T 25-04-2017 IPR007899 CHAD domain A4U88_RS23650 0e24ecdaa9001b0a0cbbc4009871ab72 257 Pfam PF05235 CHAD domain 9 208 1.1E-23 T 25-04-2017 IPR007899 CHAD domain A4U88_RS01940 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.2E-42 T 25-04-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 A4U88_RS01940 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.2E-42 T 25-04-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 A4U88_RS01940 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.2E-42 T 25-04-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 A4U88_RS01940 f91376429cc8863451093c86dcebc1ce 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.2E-42 T 25-04-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 A4U88_RS01940 f91376429cc8863451093c86dcebc1ce 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 5.6E-22 T 25-04-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 A4U88_RS01940 f91376429cc8863451093c86dcebc1ce 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 7.8E-27 T 25-04-2017 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 A4U88_RS05705 406b58e6b92de95f746728534ae528a5 351 SUPERFAMILY SSF52540 117 293 1.24E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05705 406b58e6b92de95f746728534ae528a5 351 Gene3D G3DSA:3.40.50.300 118 321 4.8E-88 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05705 406b58e6b92de95f746728534ae528a5 351 Pfam PF02562 PhoH-like protein 118 321 1.2E-94 T 25-04-2017 IPR003714 PhoH-like protein GO:0005524 A4U88_RS11585 114428cbb77d644508818aa13bd681f3 253 PIRSF PIRSF039085 1 253 2.0E-114 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS11585 114428cbb77d644508818aa13bd681f3 253 SUPERFAMILY SSF52540 5 248 1.24E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11585 114428cbb77d644508818aa13bd681f3 253 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS11585 114428cbb77d644508818aa13bd681f3 253 Gene3D G3DSA:3.40.50.300 5 249 1.1E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11585 114428cbb77d644508818aa13bd681f3 253 Pfam PF00005 ABC transporter 20 178 1.1E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS11585 114428cbb77d644508818aa13bd681f3 253 SMART SM00382 29 226 5.1E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05225 9ff0a41d69e20f7c8139b12c360c02fa 563 SUPERFAMILY SSF51735 418 547 3.44E-27 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05225 9ff0a41d69e20f7c8139b12c360c02fa 563 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 1.5E-79 T 25-04-2017 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 A4U88_RS05225 9ff0a41d69e20f7c8139b12c360c02fa 563 Pfam PF02254 TrkA-N domain 421 534 5.7E-23 T 25-04-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 A4U88_RS05225 9ff0a41d69e20f7c8139b12c360c02fa 563 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 1.4E-79 T 25-04-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 A4U88_RS05225 9ff0a41d69e20f7c8139b12c360c02fa 563 Gene3D G3DSA:3.40.50.720 413 547 7.2E-37 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 Pfam PF00072 Response regulator receiver domain 3 112 1.7E-25 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 SMART SM00448 1 112 2.2E-38 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 SUPERFAMILY SSF52172 1 173 3.42E-38 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 SMART SM00862 145 220 3.1E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 220 1.7E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 Gene3D G3DSA:3.40.50.2300 1 121 2.2E-36 T 25-04-2017 A4U88_RS09860 e424b8c52e79326444dd9d5ee91b83bb 223 Gene3D G3DSA:1.10.10.10 124 222 1.4E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS24180 0b1ceb737e3d316cd41fc1af57541cff 237 SUPERFAMILY SSF161098 14 221 2.49E-41 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24180 0b1ceb737e3d316cd41fc1af57541cff 237 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 81 2.4E-17 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS24180 0b1ceb737e3d316cd41fc1af57541cff 237 Gene3D G3DSA:1.10.3720.10 13 231 4.3E-45 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24180 0b1ceb737e3d316cd41fc1af57541cff 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 219 1.1E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 Gene3D G3DSA:1.10.10.60 220 268 6.9E-14 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 Gene3D G3DSA:3.40.50.880 5 219 2.3E-36 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 Pfam PF01965 DJ-1/PfpI family 5 174 1.1E-12 T 25-04-2017 IPR002818 DJ-1/PfpI A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 SMART SM00342 230 304 9.6E-8 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 SUPERFAMILY SSF52317 3 195 1.26E-31 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 SUPERFAMILY SSF46689 213 263 4.16E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS00270 d8e83edbaf4f8a5157bee3c4e128d4c7 307 Pfam PF12833 Helix-turn-helix domain 236 300 4.2E-12 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS14165 09bae38bc03d91de1b38d5411763cb0c 524 Gene3D G3DSA:3.90.76.10 61 127 3.1E-10 T 25-04-2017 A4U88_RS14165 09bae38bc03d91de1b38d5411763cb0c 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 438 8.2E-58 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS14165 09bae38bc03d91de1b38d5411763cb0c 524 Gene3D G3DSA:3.40.190.10 141 293 4.4E-22 T 25-04-2017 A4U88_RS14165 09bae38bc03d91de1b38d5411763cb0c 524 SUPERFAMILY SSF53850 22 518 1.21E-84 T 25-04-2017 A4U88_RS14165 09bae38bc03d91de1b38d5411763cb0c 524 Gene3D G3DSA:3.10.105.10 294 491 7.6E-36 T 25-04-2017 A4U88_RS14165 09bae38bc03d91de1b38d5411763cb0c 524 PIRSF PIRSF002741 6 522 1.8E-45 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS02545 77b21f706a7811c64b852ad7fca970dc 135 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 134 3.5E-30 T 25-04-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 A4U88_RS00545 e297377248e2a25755bf8b2c28f1cf0a 360 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3 345 3.6E-162 T 25-04-2017 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530 A4U88_RS00545 e297377248e2a25755bf8b2c28f1cf0a 360 Pfam PF00953 Glycosyl transferase family 4 71 227 9.7E-28 T 25-04-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 A4U88_RS00545 e297377248e2a25755bf8b2c28f1cf0a 360 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 348 28.333 T 25-04-2017 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530 A4U88_RS23965 4cd9d52c803dfc45df023aac7c50aef5 298 Pfam PF01553 Acyltransferase 75 210 3.9E-12 T 25-04-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 A4U88_RS23965 4cd9d52c803dfc45df023aac7c50aef5 298 SUPERFAMILY SSF69593 11 287 1.83E-27 T 25-04-2017 A4U88_RS23965 4cd9d52c803dfc45df023aac7c50aef5 298 SMART SM00563 88 230 2.0E-15 T 25-04-2017 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 A4U88_RS07050 b72cbef2a827ab6c34c610bf53ea83a0 172 SUPERFAMILY SSF55729 16 170 1.48E-27 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07050 b72cbef2a827ab6c34c610bf53ea83a0 172 Pfam PF13673 Acetyltransferase (GNAT) domain 55 149 5.2E-14 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS07050 b72cbef2a827ab6c34c610bf53ea83a0 172 Gene3D G3DSA:3.40.630.30 11 171 6.4E-36 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS04260 97c20cb47115c3cbb0a515ff406ddc86 174 Gene3D G3DSA:2.60.40.1090 28 174 5.2E-45 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS04260 97c20cb47115c3cbb0a515ff406ddc86 174 SUPERFAMILY SSF49401 30 174 7.46E-37 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS04260 97c20cb47115c3cbb0a515ff406ddc86 174 Pfam PF00419 Fimbrial protein 31 174 2.3E-15 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS20910 e6fc45d032ca2b93fa5d720773a03ef5 499 Gene3D G3DSA:1.20.1600.10 12 428 2.8E-91 T 25-04-2017 A4U88_RS20910 e6fc45d032ca2b93fa5d720773a03ef5 499 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 433 2.8E-134 T 25-04-2017 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 A4U88_RS20910 e6fc45d032ca2b93fa5d720773a03ef5 499 Pfam PF02321 Outer membrane efflux protein 232 421 3.6E-33 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS20910 e6fc45d032ca2b93fa5d720773a03ef5 499 Pfam PF02321 Outer membrane efflux protein 25 209 1.5E-28 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS20910 e6fc45d032ca2b93fa5d720773a03ef5 499 SUPERFAMILY SSF56954 25 440 2.09E-93 T 25-04-2017 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 Gene3D G3DSA:3.90.700.10 256 360 1.1E-36 T 25-04-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 Gene3D G3DSA:3.50.50.60 361 422 1.6E-99 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 Gene3D G3DSA:3.50.50.60 13 255 1.6E-99 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 21 532 2.3E-222 T 25-04-2017 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 22 44 7.3E-5 T 25-04-2017 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 382 389 7.3E-5 T 25-04-2017 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 2.8E-10 T 25-04-2017 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 2.8E-10 T 25-04-2017 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 SUPERFAMILY SSF51905 12 267 7.07E-72 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 SUPERFAMILY SSF51905 368 459 7.07E-72 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 SUPERFAMILY SSF46977 437 540 6.8E-32 T 25-04-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 Pfam PF00890 FAD binding domain 22 404 1.9E-101 T 25-04-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 533 1.1E-14 T 25-04-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 SUPERFAMILY SSF56425 250 365 7.92E-41 T 25-04-2017 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS18675 fbe9e0a6741bf291f3d31217b6b2f329 545 Gene3D G3DSA:1.20.58.100 425 533 3.5E-35 T 25-04-2017 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS09900 6a017678b0d25c0f09cc4b6709b62b37 622 Pfam PF02705 K+ potassium transporter 14 544 5.5E-208 T 25-04-2017 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 A4U88_RS09900 6a017678b0d25c0f09cc4b6709b62b37 622 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 5 622 33.565 T 25-04-2017 IPR023051 Potassium uptake protein, low affinity, Kup A4U88_RS09900 6a017678b0d25c0f09cc4b6709b62b37 622 TIGRFAM TIGR00794 kup: potassium uptake protein 103 549 1.3E-168 T 25-04-2017 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 PIRSF PIRSF000148 1 367 5.9E-69 T 25-04-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 Gene3D G3DSA:3.40.50.720 1 142 1.2E-66 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 Gene3D G3DSA:3.30.360.10 143 350 3.5E-77 T 25-04-2017 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 SMART SM00859 3 122 9.0E-25 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 4.8E-24 T 25-04-2017 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 1.8E-58 T 25-04-2017 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 34.226 T 25-04-2017 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 1.3E-216 T 25-04-2017 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 25-04-2017 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 SUPERFAMILY SSF55347 134 354 4.76E-79 T 25-04-2017 A4U88_RS22855 650c2a6d6b53a972f25db01eca820f3b 367 SUPERFAMILY SSF51735 1 147 1.1E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13370 f972980d6b1245e0ebcd1d4ae76cee47 422 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 41.886 T 25-04-2017 IPR006698 Uncharacterised protein family UPF0229 A4U88_RS13370 f972980d6b1245e0ebcd1d4ae76cee47 422 Pfam PF04285 Protein of unknown function (DUF444) 4 420 5.0E-187 T 25-04-2017 IPR006698 Uncharacterised protein family UPF0229 A4U88_RS15335 5280bdce184ee28dfe9a2be148d96d9a 123 Gene3D G3DSA:3.30.1330.40 6 122 1.6E-27 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS15335 5280bdce184ee28dfe9a2be148d96d9a 123 SUPERFAMILY SSF55298 5 122 1.57E-26 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS15335 5280bdce184ee28dfe9a2be148d96d9a 123 Pfam PF01042 Endoribonuclease L-PSP 14 122 4.6E-19 T 25-04-2017 IPR006175 YjgF/YER057c/UK114 family A4U88_RS12330 145468886771a6effd576871cdba29b0 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 300 4.4E-51 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS13460 b540be675aca79cbef98bbd8942c572c 148 PIRSF PIRSF006173 1 145 2.0E-64 T 25-04-2017 IPR008228 Uncharacterised conserved protein UCP006173 A4U88_RS13460 b540be675aca79cbef98bbd8942c572c 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 40.451 T 25-04-2017 IPR008228 Uncharacterised conserved protein UCP006173 A4U88_RS13460 b540be675aca79cbef98bbd8942c572c 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 2.8E-7 T 25-04-2017 IPR005358 Putative zinc- or iron-chelating domain containing protein A4U88_RS03855 61c243f26c3b1682161037d09f15b2af 170 Pfam PF00959 Phage lysozyme 53 158 4.6E-17 T 25-04-2017 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 A4U88_RS03855 61c243f26c3b1682161037d09f15b2af 170 Gene3D G3DSA:1.10.530.40 28 168 7.6E-53 T 25-04-2017 IPR023347 Lysozyme domain GO:0003796 A4U88_RS03855 61c243f26c3b1682161037d09f15b2af 170 SUPERFAMILY SSF53955 10 168 6.65E-53 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS04120 6db1e3a9d2cf5fd8ce8387cdc746c2b5 449 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 449 7.3E-184 T 25-04-2017 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 A4U88_RS04120 6db1e3a9d2cf5fd8ce8387cdc746c2b5 449 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 449 47.104 T 25-04-2017 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 A4U88_RS04120 6db1e3a9d2cf5fd8ce8387cdc746c2b5 449 Gene3D G3DSA:2.40.50.100 42 80 2.1E-4 T 25-04-2017 A4U88_RS04120 6db1e3a9d2cf5fd8ce8387cdc746c2b5 449 Pfam PF11973 NQRA C-terminal domain 264 312 9.4E-22 T 25-04-2017 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 A4U88_RS04120 6db1e3a9d2cf5fd8ce8387cdc746c2b5 449 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 259 2.7E-114 T 25-04-2017 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 A4U88_RS11125 b54f4c7901aaef00e0c3b687b895137e 122 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 115 2.5E-8 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS11125 b54f4c7901aaef00e0c3b687b895137e 122 SUPERFAMILY SSF54593 8 119 8.74E-21 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11125 b54f4c7901aaef00e0c3b687b895137e 122 PIRSF PIRSF039020 1 122 3.4E-45 T 25-04-2017 IPR026275 Glyoxalase/bleomycin resistance protein/dioxygenase A4U88_RS11125 b54f4c7901aaef00e0c3b687b895137e 122 Gene3D G3DSA:3.10.180.10 5 118 3.4E-21 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 5.7E-72 T 25-04-2017 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Gene3D G3DSA:3.40.50.300 550 639 5.8E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Gene3D G3DSA:3.40.50.300 280 382 5.8E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 41.033 T 25-04-2017 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 4.9E-75 T 25-04-2017 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 666 0.0 T 25-04-2017 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Gene3D G3DSA:1.10.486.10 383 524 5.6E-39 T 25-04-2017 A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Gene3D G3DSA:1.10.10.160 108 181 2.3E-23 T 25-04-2017 IPR013986 DExx box DNA helicase domain A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 SUPERFAMILY SSF52540 2 637 1.27E-164 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Gene3D G3DSA:3.40.50.300 182 279 1.0E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00520 a7e383396531d1f81b1118bcd5e2f394 674 Gene3D G3DSA:3.40.50.300 2 104 1.0E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15150 641b45496840609243c355cc54f38286 171 TIGRFAM TIGR01611 tail_tube: phage major tail tube protein 3 171 1.1E-50 T 25-04-2017 IPR006498 Tail tube protein A4U88_RS15150 641b45496840609243c355cc54f38286 171 Pfam PF04985 Phage tail tube protein FII 4 170 5.0E-65 T 25-04-2017 IPR006498 Tail tube protein A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 SUPERFAMILY SSF54665 208 291 1.74E-9 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 SMART SM01008 207 293 1.9E-18 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 SUPERFAMILY SSF56003 39 233 3.44E-33 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Gene3D G3DSA:3.90.1170.50 178 292 5.3E-22 T 25-04-2017 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Gene3D G3DSA:3.30.365.10 45 172 7.9E-39 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Gene3D G3DSA:3.30.365.10 555 748 3.6E-41 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 SUPERFAMILY SSF56003 324 747 2.21E-109 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 324 561 8.0E-28 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 600 691 6.7E-13 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 48 172 8.6E-24 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 Gene3D G3DSA:3.30.365.10 389 554 4.9E-35 T 25-04-2017 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 A4U88_RS12145 3f6caeb08a123f37b2914e10349864ea 752 PIRSF PIRSF036389 1 745 1.1E-206 T 25-04-2017 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 Gene3D G3DSA:3.40.50.1000 64 208 5.5E-48 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 SUPERFAMILY SSF56784 4 203 8.81E-48 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 181 5.5E-26 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 143 163 3.5E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 3.5E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 95 108 3.5E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 125 141 3.5E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 Gene3D G3DSA:1.10.150.240 19 63 3.2E-7 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS16895 ef15bef7fd362e78771623b706f4bfb9 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 49 181 5.4E-17 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS07965 ac054bf6404604d6fe608c7c57269a87 184 SUPERFAMILY SSF49401 34 184 1.59E-33 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS07965 ac054bf6404604d6fe608c7c57269a87 184 Pfam PF00419 Fimbrial protein 37 183 1.7E-15 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07965 ac054bf6404604d6fe608c7c57269a87 184 Gene3D G3DSA:2.60.40.1090 34 184 1.9E-39 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS00930 4d2f57a7c2140b3d72ce5698f98c3bb9 286 Pfam PF00892 EamA-like transporter family 138 274 9.2E-12 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS00930 4d2f57a7c2140b3d72ce5698f98c3bb9 286 Pfam PF00892 EamA-like transporter family 1 129 5.9E-10 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS00930 4d2f57a7c2140b3d72ce5698f98c3bb9 286 SUPERFAMILY SSF103481 198 276 3.79E-8 T 25-04-2017 A4U88_RS00930 4d2f57a7c2140b3d72ce5698f98c3bb9 286 SUPERFAMILY SSF103481 36 132 7.59E-8 T 25-04-2017 A4U88_RS00930 4d2f57a7c2140b3d72ce5698f98c3bb9 286 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 273 5.4E-84 T 25-04-2017 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 A4U88_RS03485 fe48036be5b5fec0a4ef945a081f8456 204 Pfam PF03458 UPF0126 domain 92 161 1.1E-18 T 25-04-2017 IPR005115 Uncharacterised domain UPF0126 A4U88_RS03485 fe48036be5b5fec0a4ef945a081f8456 204 Pfam PF03458 UPF0126 domain 4 78 1.3E-22 T 25-04-2017 IPR005115 Uncharacterised domain UPF0126 A4U88_RS11670 664d0ebf7681376c9bde3f09b52eee63 164 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 2.9E-34 T 25-04-2017 IPR005134 Uncharacterised protein family UPF0114 A4U88_RS11670 664d0ebf7681376c9bde3f09b52eee63 164 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 164 2.2E-78 T 25-04-2017 IPR020761 Uncharacterised protein family UPF0114, bacteria A4U88_RS11670 664d0ebf7681376c9bde3f09b52eee63 164 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 164 90.312 T 25-04-2017 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 SUPERFAMILY SSF53720 15 428 1.26E-86 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 Pfam PF00815 Histidinol dehydrogenase 29 428 9.9E-163 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 110 137 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 37 61 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 199 224 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 253 272 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 169 195 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PRINTS PR00083 Histidinol dehydrogenase signature 231 252 1.2E-98 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 Gene3D G3DSA:3.40.50.1980 31 241 6.0E-80 T 25-04-2017 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 8 428 40.53 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 231 263 - T 25-04-2017 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 37 427 1.3E-157 T 25-04-2017 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS07845 169a3913dfebb1f30572601ee5cfe8dc 435 PIRSF PIRSF000099 1 431 1.8E-164 T 25-04-2017 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 A4U88_RS04195 04f08c171a631ed2f404f735719aa048 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 1 128 32.32 T 25-04-2017 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 A4U88_RS04195 04f08c171a631ed2f404f735719aa048 133 Pfam PF07417 Transcriptional regulator Crl 5 122 2.4E-55 T 25-04-2017 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 A4U88_RS15920 b2bd776b5ec7b63116672c12fb27798c 276 SUPERFAMILY SSF53474 1 275 3.19E-66 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15920 b2bd776b5ec7b63116672c12fb27798c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 4.3E-10 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15920 b2bd776b5ec7b63116672c12fb27798c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 4.3E-10 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15920 b2bd776b5ec7b63116672c12fb27798c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 4.3E-10 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15920 b2bd776b5ec7b63116672c12fb27798c 276 Pfam PF00561 alpha/beta hydrolase fold 24 256 6.3E-23 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15920 b2bd776b5ec7b63116672c12fb27798c 276 Gene3D G3DSA:3.40.50.1820 3 275 5.8E-75 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS05525 ee2128ef67dc227eccef38cacc1e0622 275 PIRSF PIRSF039085 23 275 6.1E-105 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS05525 ee2128ef67dc227eccef38cacc1e0622 275 SUPERFAMILY SSF52540 26 270 4.36E-76 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05525 ee2128ef67dc227eccef38cacc1e0622 275 SMART SM00382 51 248 1.8E-20 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS05525 ee2128ef67dc227eccef38cacc1e0622 275 Gene3D G3DSA:3.40.50.300 26 272 8.4E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS05525 ee2128ef67dc227eccef38cacc1e0622 275 ProSitePatterns PS00211 ABC transporters family signature. 172 186 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS05525 ee2128ef67dc227eccef38cacc1e0622 275 Pfam PF00005 ABC transporter 42 200 4.7E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 Gene3D G3DSA:3.20.20.70 29 123 5.3E-9 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 Pfam PF04055 Radical SAM superfamily 27 123 1.5E-9 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 SUPERFAMILY SSF102114 24 119 6.67E-8 T 25-04-2017 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 2.2E-115 T 25-04-2017 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 39.123 T 25-04-2017 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 3.1E-13 T 25-04-2017 A4U88_RS03575 2f46695a5ab09f06fe12ab64c2cddafc 223 PIRSF PIRSF000370 1 223 3.8E-72 T 25-04-2017 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 A4U88_RS14475 0054549803329350e0d5423ed6c39f05 144 Gene3D G3DSA:1.20.58.300 1 118 2.3E-13 T 25-04-2017 IPR007809 FlgN-like protein GO:0005515|GO:0044780 A4U88_RS14475 0054549803329350e0d5423ed6c39f05 144 Pfam PF05130 FlgN protein 1 133 6.2E-24 T 25-04-2017 IPR007809 FlgN-like protein GO:0005515|GO:0044780 A4U88_RS14475 0054549803329350e0d5423ed6c39f05 144 SUPERFAMILY SSF140566 1 118 1.96E-16 T 25-04-2017 IPR007809 FlgN-like protein GO:0005515|GO:0044780 A4U88_RS16220 ba1a9e411d4841c99a6f12349e9d796e 255 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 159 8.8E-20 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS16220 ba1a9e411d4841c99a6f12349e9d796e 255 Gene3D G3DSA:3.40.80.10 2 177 1.2E-55 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS16220 ba1a9e411d4841c99a6f12349e9d796e 255 SUPERFAMILY SSF55846 11 174 2.22E-44 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS16220 ba1a9e411d4841c99a6f12349e9d796e 255 SUPERFAMILY SSF47090 179 254 3.22E-19 T 25-04-2017 IPR002477 Peptidoglycan binding-like A4U88_RS16220 ba1a9e411d4841c99a6f12349e9d796e 255 SMART SM00644 7 158 2.4E-33 T 25-04-2017 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 A4U88_RS23750 99e776ce0c65601e66ea1728a1953582 360 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 16 359 4.0E-160 T 25-04-2017 IPR011916 Lipopolysaccharide heptosyltransferase III, putative A4U88_RS23750 99e776ce0c65601e66ea1728a1953582 360 Gene3D G3DSA:3.40.50.2000 15 170 1.0E-47 T 25-04-2017 A4U88_RS23750 99e776ce0c65601e66ea1728a1953582 360 Gene3D G3DSA:3.40.50.2000 189 359 1.0E-48 T 25-04-2017 A4U88_RS23750 99e776ce0c65601e66ea1728a1953582 360 SUPERFAMILY SSF53756 15 359 2.04E-86 T 25-04-2017 A4U88_RS23750 99e776ce0c65601e66ea1728a1953582 360 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 89 330 3.4E-50 T 25-04-2017 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 Gene3D G3DSA:3.40.50.300 10 226 2.4E-34 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 SMART SM00382 28 219 3.1E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 SMART SM00382 285 479 5.1E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 SUPERFAMILY SSF52540 251 479 7.34E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 Gene3D G3DSA:3.40.50.300 253 468 6.1E-40 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 SUPERFAMILY SSF52540 8 225 1.29E-35 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 Pfam PF00005 ABC transporter 24 163 6.3E-17 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06165 b8b1e50cc198e85d228fe38da92d226d 495 Pfam PF00005 ABC transporter 276 429 7.0E-25 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 Gene3D G3DSA:3.10.580.10 253 368 2.3E-18 T 25-04-2017 A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 SMART SM00382 31 218 5.5E-17 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 Gene3D G3DSA:3.40.50.300 1 241 3.7E-77 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 SUPERFAMILY SSF52540 1 244 5.32E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 Pfam PF00571 CBS domain 322 368 2.9E-5 T 25-04-2017 IPR000644 CBS domain A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 Pfam PF00571 CBS domain 261 305 4.1E-4 T 25-04-2017 IPR000644 CBS domain A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 SMART SM00116 322 368 23.0 T 25-04-2017 IPR000644 CBS domain A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 SMART SM00116 263 311 0.018 T 25-04-2017 IPR000644 CBS domain A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 Pfam PF00005 ABC transporter 22 168 3.8E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 20 367 3.8E-107 T 25-04-2017 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 A4U88_RS11180 7d0e773f217ae0e5548cd5e2c3d7aa3c 379 SUPERFAMILY SSF54631 255 369 2.44E-16 T 25-04-2017 A4U88_RS23195 a9b93caa8c7314cee2988c1481077f63 280 SUPERFAMILY SSF53335 9 279 6.22E-100 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS23195 a9b93caa8c7314cee2988c1481077f63 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 161 167 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS23195 a9b93caa8c7314cee2988c1481077f63 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS23195 a9b93caa8c7314cee2988c1481077f63 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.985 T 25-04-2017 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 A4U88_RS23195 a9b93caa8c7314cee2988c1481077f63 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 8.6E-112 T 25-04-2017 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 A4U88_RS23195 a9b93caa8c7314cee2988c1481077f63 280 Gene3D G3DSA:3.40.50.150 1 280 1.3E-119 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 PIRSF PIRSF001362 1 435 2.1E-223 T 25-04-2017 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 SUPERFAMILY SSF51621 6 418 3.77E-152 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 Gene3D G3DSA:3.20.20.60 6 418 9.4E-169 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 ProSitePatterns PS00161 Isocitrate lyase signature. 194 199 - T 25-04-2017 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 256 9.6E-114 T 25-04-2017 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 257 435 4.1E-89 T 25-04-2017 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 Pfam PF00463 Isocitrate lyase family 258 435 2.7E-48 T 25-04-2017 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 A4U88_RS22095 60aac5c1b03bbdd595014ee168ce9257 435 Pfam PF00463 Isocitrate lyase family 9 256 4.3E-61 T 25-04-2017 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 A4U88_RS10605 6f280ed7e8373b4c924c758153f60736 345 Gene3D G3DSA:3.40.1570.10 173 341 5.9E-11 T 25-04-2017 A4U88_RS10605 6f280ed7e8373b4c924c758153f60736 345 Gene3D G3DSA:3.40.1570.10 6 141 3.7E-6 T 25-04-2017 A4U88_RS10605 6f280ed7e8373b4c924c758153f60736 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 206 338 1.8E-42 T 25-04-2017 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 A4U88_RS10605 6f280ed7e8373b4c924c758153f60736 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 29 156 1.9E-42 T 25-04-2017 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 A4U88_RS10605 6f280ed7e8373b4c924c758153f60736 345 SUPERFAMILY SSF144064 4 338 9.42E-132 T 25-04-2017 A4U88_RS05515 018cf1c10c16d4e181ddf9864e3bfe15 159 Pfam PF00313 'Cold-shock' DNA-binding domain 1 61 3.3E-11 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS05515 018cf1c10c16d4e181ddf9864e3bfe15 159 SUPERFAMILY SSF50249 2 62 1.0E-10 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS05515 018cf1c10c16d4e181ddf9864e3bfe15 159 SMART SM00357 2 63 0.0024 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS05515 018cf1c10c16d4e181ddf9864e3bfe15 159 Gene3D G3DSA:2.40.50.140 1 67 1.5E-19 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS19650 e04829289d350b940d77728f40de73ec 80 Gene3D G3DSA:1.10.1200.10 7 79 2.0E-13 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS19650 e04829289d350b940d77728f40de73ec 80 SUPERFAMILY SSF47336 7 79 2.88E-14 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS19650 e04829289d350b940d77728f40de73ec 80 Pfam PF00550 Phosphopantetheine attachment site 10 74 4.0E-12 T 25-04-2017 IPR009081 Phosphopantetheine binding ACP domain A4U88_RS07420 dec3a7ff2e5353f783aa1756ba4398ab 235 SUPERFAMILY SSF47616 102 230 1.53E-33 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS07420 dec3a7ff2e5353f783aa1756ba4398ab 235 SUPERFAMILY SSF52833 12 102 7.18E-25 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS07420 dec3a7ff2e5353f783aa1756ba4398ab 235 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 222 3.2E-9 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS07420 dec3a7ff2e5353f783aa1756ba4398ab 235 Gene3D G3DSA:1.20.1050.10 102 226 3.3E-40 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS07420 dec3a7ff2e5353f783aa1756ba4398ab 235 Gene3D G3DSA:3.40.30.10 7 101 2.8E-30 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS07420 dec3a7ff2e5353f783aa1756ba4398ab 235 Pfam PF02798 Glutathione S-transferase, N-terminal domain 21 99 4.1E-14 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 Gene3D G3DSA:3.30.420.150 128 300 3.9E-52 T 25-04-2017 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 2 495 56.268 T 25-04-2017 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 8 300 2.0E-93 T 25-04-2017 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 PIRSF PIRSF001267 1 497 1.0E-185 T 25-04-2017 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 SUPERFAMILY SSF109604 307 496 5.23E-46 T 25-04-2017 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 SUPERFAMILY SSF53067 7 128 2.89E-38 T 25-04-2017 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 Gene3D G3DSA:3.30.420.40 3 127 3.6E-46 T 25-04-2017 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 Pfam PF02541 Ppx/GppA phosphatase family 21 301 8.1E-98 T 25-04-2017 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 A4U88_RS00525 5fb3b7b2ad68109311c4d782452d1f7d 498 SUPERFAMILY SSF53067 132 300 7.9E-43 T 25-04-2017 A4U88_RS18915 83310409d40ec27f66dc3d4bc66cbaf0 143 SUPERFAMILY SSF69118 6 142 4.13E-43 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS18915 83310409d40ec27f66dc3d4bc66cbaf0 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 18 94 3.2E-19 T 25-04-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 A4U88_RS18915 83310409d40ec27f66dc3d4bc66cbaf0 143 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 77 2.3E-15 T 25-04-2017 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 A4U88_RS18915 83310409d40ec27f66dc3d4bc66cbaf0 143 Gene3D G3DSA:1.20.1290.10 3 142 2.8E-50 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS10930 329970a929f5a18c5a2496fe2ae9beb4 126 Gene3D G3DSA:3.10.450.50 5 112 3.0E-16 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS10930 329970a929f5a18c5a2496fe2ae9beb4 126 Pfam PF12680 SnoaL-like domain 12 111 1.0E-14 T 25-04-2017 IPR009959 Polyketide cyclase SnoaL-like domain A4U88_RS10930 329970a929f5a18c5a2496fe2ae9beb4 126 SUPERFAMILY SSF54427 7 116 1.54E-30 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS10930 329970a929f5a18c5a2496fe2ae9beb4 126 PIRSF PIRSF030561 4 116 5.1E-38 T 25-04-2017 IPR008317 Uncharacterised conserved protein UCP030561 A4U88_RS14000 a891ed10ca3a2b12b8330bceb781b8ce 50 Pfam PF10617 Protein of unknown function (DUF2474) 11 49 4.0E-22 T 25-04-2017 IPR018895 Protein of unknown function DUF2474 A4U88_RS21000 d420db5d57131444418e5d4d0a47b65d 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 1.4E-31 T 25-04-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS21000 d420db5d57131444418e5d4d0a47b65d 119 Gene3D G3DSA:3.30.1130.10 1 114 7.6E-43 T 25-04-2017 A4U88_RS21000 d420db5d57131444418e5d4d0a47b65d 119 SUPERFAMILY SSF55620 1 115 1.45E-37 T 25-04-2017 A4U88_RS21000 d420db5d57131444418e5d4d0a47b65d 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 5.2E-41 T 25-04-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS21000 d420db5d57131444418e5d4d0a47b65d 119 SMART SM00905 4 114 1.4E-48 T 25-04-2017 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS21000 d420db5d57131444418e5d4d0a47b65d 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 3.7E-27 T 25-04-2017 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 2.2E-63 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 25-04-2017 A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 Gene3D G3DSA:3.40.50.1000 1 73 1.5E-52 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 Gene3D G3DSA:3.40.50.1000 176 270 1.5E-52 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 SUPERFAMILY SSF56784 1 270 8.52E-67 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 244 256 1.9E-5 T 25-04-2017 A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 240 1.9E-5 T 25-04-2017 A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 1.9E-5 T 25-04-2017 A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 94 7.2E-12 T 25-04-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 A4U88_RS06220 fbf769b6ad9bb5d53ecd77a9a5513d45 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 2.4E-69 T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS17375 91452ea437827fbce71c9864c9a90add 145 Pfam PF15970 HicB_like antitoxin of bacterial toxin-antitoxin system 5 84 4.0E-24 T 25-04-2017 IPR032753 HicB-like antitoxin A4U88_RS13630 aa164608c3981026cd57723d9fa118f4 131 Pfam PF01124 MAPEG family 3 119 2.9E-25 T 25-04-2017 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein A4U88_RS13630 aa164608c3981026cd57723d9fa118f4 131 Gene3D G3DSA:1.20.120.550 4 127 9.1E-22 T 25-04-2017 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain A4U88_RS13630 aa164608c3981026cd57723d9fa118f4 131 SUPERFAMILY SSF161084 4 127 2.35E-29 T 25-04-2017 A4U88_RS14570 4a77649f0b2e31880dfcdebc8702c1ec 116 Pfam PF05247 Flagellar transcriptional activator (FlhD) 1 100 1.6E-40 T 25-04-2017 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 A4U88_RS14570 4a77649f0b2e31880dfcdebc8702c1ec 116 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 104 28.869 T 25-04-2017 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 A4U88_RS14570 4a77649f0b2e31880dfcdebc8702c1ec 116 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 9 94 2.0E-45 T 25-04-2017 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 A4U88_RS14570 4a77649f0b2e31880dfcdebc8702c1ec 116 SUPERFAMILY SSF63592 1 98 1.06E-38 T 25-04-2017 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 A4U88_RS24220 ec1e718164ab9e3b91c1c0c3f1c8c647 266 Gene3D G3DSA:3.60.15.10 24 253 1.6E-23 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS24220 ec1e718164ab9e3b91c1c0c3f1c8c647 266 SUPERFAMILY SSF56281 23 249 1.28E-32 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS24220 ec1e718164ab9e3b91c1c0c3f1c8c647 266 Pfam PF00753 Metallo-beta-lactamase superfamily 27 85 3.3E-13 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 SUPERFAMILY SSF55424 313 402 3.43E-19 T 25-04-2017 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 Gene3D G3DSA:3.50.50.60 109 308 4.7E-42 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 Gene3D G3DSA:3.30.390.30 320 402 2.7E-23 T 25-04-2017 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 SUPERFAMILY SSF51905 148 310 5.44E-25 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 104 122 4.6E-21 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.6E-21 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 4.6E-21 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 149 167 4.6E-21 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 281 4.6E-21 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 284 1.7E-50 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 Pfam PF14759 Reductase C-terminal 320 402 2.4E-19 T 25-04-2017 IPR028202 Reductase, C-terminal A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 2.6E-17 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 149 174 2.6E-17 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 274 281 2.6E-17 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 2.6E-17 T 25-04-2017 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 Gene3D G3DSA:3.50.50.60 6 108 2.9E-28 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20260 e3c72a83baeabd0df1334d64f39d4873 403 SUPERFAMILY SSF51905 6 194 9.36E-43 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS13485 635f20917b3b67030e114bb3c631b4bb 270 PIRSF PIRSF003092 1 270 1.3E-99 T 25-04-2017 IPR025501 ATP binding protein MinD A4U88_RS13485 635f20917b3b67030e114bb3c631b4bb 270 SUPERFAMILY SSF52540 1 268 6.17E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13485 635f20917b3b67030e114bb3c631b4bb 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 217 8.1E-29 T 25-04-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain A4U88_RS13485 635f20917b3b67030e114bb3c631b4bb 270 Gene3D G3DSA:3.40.50.300 1 248 7.2E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13485 635f20917b3b67030e114bb3c631b4bb 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 1.6E-111 T 25-04-2017 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 A4U88_RS22080 5513b5aba2a2833622b0647043f1a1a8 604 Pfam PF00920 Dehydratase family 68 599 4.3E-157 T 25-04-2017 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS22080 5513b5aba2a2833622b0647043f1a1a8 604 SUPERFAMILY SSF52016 420 601 7.85E-58 T 25-04-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel A4U88_RS22080 5513b5aba2a2833622b0647043f1a1a8 604 SUPERFAMILY SSF143975 2 419 5.89E-144 T 25-04-2017 A4U88_RS22080 5513b5aba2a2833622b0647043f1a1a8 604 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 4 602 0.0 T 25-04-2017 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 A4U88_RS22080 5513b5aba2a2833622b0647043f1a1a8 604 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 506 517 - T 25-04-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS22080 5513b5aba2a2833622b0647043f1a1a8 604 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 25-04-2017 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 A4U88_RS11735 044a4e32718577df334f3d765800e9c2 390 SUPERFAMILY SSF103473 17 381 1.57E-34 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11735 044a4e32718577df334f3d765800e9c2 390 Gene3D G3DSA:1.20.1250.20 208 381 9.3E-12 T 25-04-2017 A4U88_RS11735 044a4e32718577df334f3d765800e9c2 390 Gene3D G3DSA:1.20.1250.20 22 186 5.7E-12 T 25-04-2017 A4U88_RS11735 044a4e32718577df334f3d765800e9c2 390 Pfam PF07690 Major Facilitator Superfamily 23 352 4.3E-11 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS01640 0db1d074fda63b1ee5a83925ca7a91f2 156 Gene3D G3DSA:3.40.50.300 3 151 8.7E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01640 0db1d074fda63b1ee5a83925ca7a91f2 156 SUPERFAMILY SSF52540 27 139 1.22E-24 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS01640 0db1d074fda63b1ee5a83925ca7a91f2 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 2.9E-55 T 25-04-2017 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 A4U88_RS01640 0db1d074fda63b1ee5a83925ca7a91f2 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 1.9E-41 T 25-04-2017 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 A4U88_RS24090 226332d4ce3446be9f8579d46aff896a 206 PIRSF PIRSF003078 1 206 3.1E-63 T 25-04-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 A4U88_RS24090 226332d4ce3446be9f8579d46aff896a 206 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 26 204 2.3E-57 T 25-04-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 A4U88_RS24090 226332d4ce3446be9f8579d46aff896a 206 SUPERFAMILY SSF53335 4 204 2.13E-42 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS24090 226332d4ce3446be9f8579d46aff896a 206 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 202 28.445 T 25-04-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 A4U88_RS24090 226332d4ce3446be9f8579d46aff896a 206 Gene3D G3DSA:3.40.50.150 3 204 3.0E-73 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS24090 226332d4ce3446be9f8579d46aff896a 206 Pfam PF02527 rRNA small subunit methyltransferase G 20 201 2.3E-61 T 25-04-2017 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 Gene3D G3DSA:3.40.640.10 64 331 1.9E-91 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 422 3.5E-185 T 25-04-2017 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 Pfam PF00202 Aminotransferase class-III 29 420 1.6E-128 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 424 50.803 T 25-04-2017 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 Gene3D G3DSA:3.90.1150.10 5 63 1.0E-61 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 Gene3D G3DSA:3.90.1150.10 334 422 1.0E-61 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 PIRSF PIRSF000521 28 422 3.3E-31 T 25-04-2017 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 A4U88_RS06255 89faf7e9397eae3e4bb9b948e0d8f107 424 SUPERFAMILY SSF53383 5 422 1.07E-136 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 SUPERFAMILY SSF103088 58 170 3.27E-34 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 Gene3D G3DSA:3.30.1330.60 67 170 3.1E-34 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 69 171 9.1E-47 T 25-04-2017 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 ProSitePatterns PS01068 OmpA-like domain. 103 147 - T 25-04-2017 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 PRINTS PR01021 OMPA domain signature 116 132 1.1E-16 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 PRINTS PR01021 OMPA domain signature 71 93 1.1E-16 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 PRINTS PR01021 OMPA domain signature 101 116 1.1E-16 T 25-04-2017 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 A4U88_RS06040 622907c1a59ab4a18897786c8a528dbf 171 Pfam PF00691 OmpA family 70 165 2.2E-21 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS20190 f798901623e92498d388a33b7ace7edd 362 Gene3D G3DSA:3.40.190.10 142 282 4.3E-55 T 25-04-2017 A4U88_RS20190 f798901623e92498d388a33b7ace7edd 362 SUPERFAMILY SSF53850 44 341 9.71E-52 T 25-04-2017 A4U88_RS20190 f798901623e92498d388a33b7ace7edd 362 Gene3D G3DSA:3.40.190.10 14 141 2.1E-58 T 25-04-2017 A4U88_RS20190 f798901623e92498d388a33b7ace7edd 362 Gene3D G3DSA:3.40.190.10 283 357 2.1E-58 T 25-04-2017 A4U88_RS20190 f798901623e92498d388a33b7ace7edd 362 Pfam PF13416 Bacterial extracellular solute-binding protein 60 315 2.4E-18 T 25-04-2017 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 569 589 5.3E-8 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 552 569 5.3E-8 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Pfam PF00158 Sigma-54 interaction domain 301 460 1.1E-54 T 25-04-2017 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Pfam PF01590 GAF domain 77 188 7.0E-5 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 SMART SM00382 313 457 2.8E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Gene3D G3DSA:3.30.450.40 144 191 1.0E-4 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Pfam PF02954 Bacterial regulatory protein, Fis family 552 584 1.5E-11 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 SUPERFAMILY SSF52540 306 535 3.3E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Gene3D G3DSA:3.40.50.300 304 466 2.2E-41 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 SUPERFAMILY SSF46689 546 585 3.88E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 SUPERFAMILY SSF55781 53 188 8.63E-6 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Gene3D G3DSA:1.10.10.60 553 583 2.1E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS11715 3f2da81578c3e4bb8febb1ff1ef18d29 591 Gene3D G3DSA:1.10.8.60 473 537 3.3E-12 T 25-04-2017 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 Gene3D G3DSA:3.40.190.10 200 246 6.0E-8 T 25-04-2017 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 1.9E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 Gene3D G3DSA:3.40.190.10 98 199 2.4E-16 T 25-04-2017 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 SUPERFAMILY SSF53850 96 270 1.52E-31 T 25-04-2017 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 Pfam PF03466 LysR substrate binding domain 97 276 2.4E-30 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 Gene3D G3DSA:1.10.10.10 10 90 4.5E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 5.8E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 5.8E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 5.8E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS16875 771cccb7d5c79b45f481d1c15cb2210f 314 SUPERFAMILY SSF46785 10 119 4.08E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22250 508232d7eca785fea812e05998841785 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 25-04-2017 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22250 508232d7eca785fea812e05998841785 144 Gene3D G3DSA:3.100.10.10 32 143 4.8E-25 T 25-04-2017 A4U88_RS22250 508232d7eca785fea812e05998841785 144 SUPERFAMILY SSF52080 4 143 3.53E-46 T 25-04-2017 IPR021131 Ribosomal protein L18e/L15P A4U88_RS22250 508232d7eca785fea812e05998841785 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 7.5E-31 T 25-04-2017 IPR021131 Ribosomal protein L18e/L15P A4U88_RS22250 508232d7eca785fea812e05998841785 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 2.1E-50 T 25-04-2017 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22250 508232d7eca785fea812e05998841785 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.188 T 25-04-2017 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 Gene3D G3DSA:1.10.3860.10 5 407 3.1E-119 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.755 T 25-04-2017 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 4.5E-37 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 1.7E-114 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 25-04-2017 IPR018107 Sodium:dicarboxylate symporter, conserved site A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 SUPERFAMILY SSF118215 9 401 2.75E-121 T 25-04-2017 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 A4U88_RS00505 01a4bd2e8d03ae18c22ed2c4609404b2 428 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 25-04-2017 IPR018107 Sodium:dicarboxylate symporter, conserved site A4U88_RS17280 23bbcde961c84fc3f8c3c1b555a5de26 308 Pfam PF01226 Formate/nitrite transporter 44 279 9.9E-43 T 25-04-2017 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 A4U88_RS17280 23bbcde961c84fc3f8c3c1b555a5de26 308 Gene3D G3DSA:1.20.1080.10 60 284 2.0E-48 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS05535 5ff42f501c113ccaa4700b20a29bb3c6 175 Gene3D G3DSA:3.40.630.30 39 134 1.9E-21 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS05535 5ff42f501c113ccaa4700b20a29bb3c6 175 Pfam PF00583 Acetyltransferase (GNAT) family 59 133 1.2E-9 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS05535 5ff42f501c113ccaa4700b20a29bb3c6 175 SUPERFAMILY SSF55729 9 139 3.6E-20 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 PIRSF PIRSF000386 1 252 3.2E-102 T 25-04-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 2 233 8.3E-110 T 25-04-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 255 118.892 T 25-04-2017 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 Gene3D G3DSA:1.10.1270.20 161 249 2.0E-37 T 25-04-2017 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 5.6E-71 T 25-04-2017 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 SUPERFAMILY SSF75217 2 247 5.76E-102 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS03840 3694cb3619e358b64a78df0b1def6929 255 Gene3D G3DSA:3.40.1280.10 3 160 7.4E-67 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS14485 29e4108999ac25188f0a86e8ee495107 100 SUPERFAMILY SSF47413 44 93 1.2E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS14485 29e4108999ac25188f0a86e8ee495107 100 Gene3D G3DSA:1.10.260.40 44 98 2.8E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS14485 29e4108999ac25188f0a86e8ee495107 100 Pfam PF01381 Helix-turn-helix 45 88 4.7E-7 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS22815 d78be5791562951bdbdf455c639f850a 278 Pfam PF01694 Rhomboid family 132 270 1.1E-27 T 25-04-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 A4U88_RS22815 d78be5791562951bdbdf455c639f850a 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 84 6.8E-30 T 25-04-2017 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 A4U88_RS22815 d78be5791562951bdbdf455c639f850a 278 Gene3D G3DSA:1.20.1540.10 96 268 9.3E-37 T 25-04-2017 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 A4U88_RS22815 d78be5791562951bdbdf455c639f850a 278 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 277 50.069 T 25-04-2017 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 A4U88_RS22815 d78be5791562951bdbdf455c639f850a 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 272 1.8E-120 T 25-04-2017 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 A4U88_RS22815 d78be5791562951bdbdf455c639f850a 278 SUPERFAMILY SSF144091 93 271 7.19E-44 T 25-04-2017 A4U88_RS07485 90efb5631a2bea03c973452118a1dc91 253 Pfam PF00899 ThiF family 13 245 4.1E-64 T 25-04-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 A4U88_RS07485 90efb5631a2bea03c973452118a1dc91 253 SUPERFAMILY SSF69572 4 249 1.7E-88 T 25-04-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 A4U88_RS07485 90efb5631a2bea03c973452118a1dc91 253 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 9 248 9.1E-122 T 25-04-2017 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 A4U88_RS07485 90efb5631a2bea03c973452118a1dc91 253 Gene3D G3DSA:3.40.50.720 5 249 5.3E-79 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS04410 707589689f00d5dbf4e2c3bbf2c653fe 253 Gene3D G3DSA:3.40.50.360 1 233 3.0E-62 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS04410 707589689f00d5dbf4e2c3bbf2c653fe 253 Pfam PF02525 Flavodoxin-like fold 1 203 1.7E-50 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS04410 707589689f00d5dbf4e2c3bbf2c653fe 253 SUPERFAMILY SSF52218 1 235 1.02E-61 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 Pfam PF01595 Domain of unknown function DUF21 6 197 6.8E-38 T 25-04-2017 IPR002550 Domain of unknown function DUF21 A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 SMART SM00116 285 333 10.0 T 25-04-2017 IPR000644 CBS domain A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 SMART SM00116 221 270 1.3 T 25-04-2017 IPR000644 CBS domain A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 Gene3D G3DSA:3.10.580.10 198 337 2.9E-13 T 25-04-2017 A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 Pfam PF00571 CBS domain 287 333 0.0028 T 25-04-2017 IPR000644 CBS domain A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 Gene3D G3DSA:3.30.465.10 341 425 3.4E-27 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 SMART SM01091 346 426 7.4E-27 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 SUPERFAMILY SSF56176 344 428 4.09E-22 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 Pfam PF03471 Transporter associated domain 348 425 1.8E-20 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS01795 f2b99b8267ca62e252dc21c7d9984aa5 443 SUPERFAMILY SSF54631 200 335 1.08E-20 T 25-04-2017 A4U88_RS01375 e37f45ad30d189aa8abb0c9c88d2a8bc 418 Gene3D G3DSA:1.20.1250.20 17 207 5.8E-18 T 25-04-2017 A4U88_RS01375 e37f45ad30d189aa8abb0c9c88d2a8bc 418 Gene3D G3DSA:1.20.1250.20 227 409 2.2E-12 T 25-04-2017 A4U88_RS01375 e37f45ad30d189aa8abb0c9c88d2a8bc 418 SUPERFAMILY SSF103473 17 407 5.36E-40 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS01375 e37f45ad30d189aa8abb0c9c88d2a8bc 418 Pfam PF05977 Transmembrane secretion effector 17 375 3.3E-18 T 25-04-2017 IPR010290 Transmembrane secretion effector A4U88_RS10530 e8430a5294f64119278d1ad44e5fc358 251 SMART SM00382 22 227 5.0E-6 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS10530 e8430a5294f64119278d1ad44e5fc358 251 Gene3D G3DSA:3.40.50.300 16 223 3.3E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10530 e8430a5294f64119278d1ad44e5fc358 251 Pfam PF00005 ABC transporter 16 163 4.8E-19 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10530 e8430a5294f64119278d1ad44e5fc358 251 SUPERFAMILY SSF52540 15 224 6.63E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10530 e8430a5294f64119278d1ad44e5fc358 251 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 1 249 44.633 T 25-04-2017 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 A4U88_RS10530 e8430a5294f64119278d1ad44e5fc358 251 ProSitePatterns PS00211 ABC transporters family signature. 128 142 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS10020 6a99a37fafb3b4bca12786d5d20f1bb7 116 SUPERFAMILY SSF51316 1 113 2.93E-29 T 25-04-2017 IPR011057 Mss4-like A4U88_RS10020 6a99a37fafb3b4bca12786d5d20f1bb7 116 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 26 87 5.3E-8 T 25-04-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 A4U88_RS10020 6a99a37fafb3b4bca12786d5d20f1bb7 116 Gene3D G3DSA:3.90.1590.10 1 109 1.5E-19 T 25-04-2017 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 A4U88_RS16500 7dc76ea9288f332082bce548588a3e64 245 Gene3D G3DSA:3.30.70.20 152 229 5.1E-26 T 25-04-2017 A4U88_RS16500 7dc76ea9288f332082bce548588a3e64 245 Gene3D G3DSA:3.30.70.20 43 103 8.5E-14 T 25-04-2017 A4U88_RS16500 7dc76ea9288f332082bce548588a3e64 245 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS16500 7dc76ea9288f332082bce548588a3e64 245 Pfam PF13247 4Fe-4S dicluster domain 94 187 5.5E-30 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS16500 7dc76ea9288f332082bce548588a3e64 245 SUPERFAMILY SSF54862 42 222 6.8E-65 T 25-04-2017 A4U88_RS16500 7dc76ea9288f332082bce548588a3e64 245 Gene3D G3DSA:3.30.70.20 104 151 1.3E-24 T 25-04-2017 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.4E-18 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 Gene3D G3DSA:3.40.50.2300 2 125 1.9E-21 T 25-04-2017 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 SUPERFAMILY SSF46894 146 208 2.01E-16 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 SUPERFAMILY SSF52172 3 135 4.13E-21 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 Pfam PF00072 Response regulator receiver domain 6 120 6.0E-25 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 Gene3D G3DSA:1.10.10.10 126 206 6.4E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.851 T 25-04-2017 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 SMART SM00421 148 205 4.2E-16 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 SMART SM00448 4 120 3.0E-14 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 4.0E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 4.0E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS16665 eb6c53f032063adb264cae5f55d31e31 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 4.0E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS13095 b9b5149b29127b85d648773d2053c56a 314 SUPERFAMILY SSF103481 52 150 2.09E-9 T 25-04-2017 A4U88_RS13095 b9b5149b29127b85d648773d2053c56a 314 SUPERFAMILY SSF103481 202 302 1.7E-9 T 25-04-2017 A4U88_RS13095 b9b5149b29127b85d648773d2053c56a 314 Pfam PF00892 EamA-like transporter family 162 298 2.8E-8 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS13095 b9b5149b29127b85d648773d2053c56a 314 Pfam PF00892 EamA-like transporter family 24 149 1.2E-9 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 Gene3D G3DSA:3.40.190.10 94 191 4.5E-10 T 25-04-2017 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 Gene3D G3DSA:3.40.190.10 192 237 2.1E-5 T 25-04-2017 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 4.3E-10 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 4.3E-10 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 4.3E-10 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 SUPERFAMILY SSF53850 95 276 3.44E-20 T 25-04-2017 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 SUPERFAMILY SSF46785 4 107 2.27E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 Pfam PF03466 LysR substrate binding domain 94 276 5.1E-20 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 1.8E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS00285 dd942cf2f87a93e27fe1fde6b8e6f42f 284 Gene3D G3DSA:1.10.10.10 6 87 1.6E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 Gene3D G3DSA:3.40.190.10 88 169 6.5E-17 T 25-04-2017 A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 Gene3D G3DSA:3.40.190.10 170 259 8.7E-17 T 25-04-2017 A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 Pfam PF03466 LysR substrate binding domain 88 286 5.0E-28 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 Gene3D G3DSA:1.10.10.10 1 85 3.1E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 SUPERFAMILY SSF46785 1 84 1.57E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 SUPERFAMILY SSF53850 89 287 5.43E-26 T 25-04-2017 A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.7E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07250 f436f6db806116a00b5ce7e59b161f7f 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08985 626465d285b216d18dab182885966905 282 SMART SM00465 29 107 4.9E-10 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS08985 626465d285b216d18dab182885966905 282 SUPERFAMILY SSF82771 30 106 1.27E-9 T 25-04-2017 IPR000305 GIY-YIG nuclease superfamily A4U88_RS02285 a286ba1a6dd462ebaaa42940e6d82bfd 364 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 345 9.0E-75 T 25-04-2017 IPR005495 Permease LptG/LptF-related GO:0016021 A4U88_RS02285 a286ba1a6dd462ebaaa42940e6d82bfd 364 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 348 1.3E-116 T 25-04-2017 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 A4U88_RS03905 db7b7bfcb722adbbac4e9f88bd664a64 243 Gene3D G3DSA:3.60.140.10 3 242 2.0E-96 T 25-04-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase A4U88_RS03905 db7b7bfcb722adbbac4e9f88bd664a64 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 25 242 1.3E-70 T 25-04-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase A4U88_RS03905 db7b7bfcb722adbbac4e9f88bd664a64 243 SUPERFAMILY SSF64438 4 242 1.7E-89 T 25-04-2017 IPR011324 Cytotoxic necrotizing factor-like, catalytic A4U88_RS03905 db7b7bfcb722adbbac4e9f88bd664a64 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 5.6E-76 T 25-04-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase A4U88_RS17600 a651864c8b7287ca6b7783b6c8dfcfb8 252 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 16 232 4.2E-45 T 25-04-2017 A4U88_RS17600 a651864c8b7287ca6b7783b6c8dfcfb8 252 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 10 250 29.066 T 25-04-2017 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 SUPERFAMILY SSF51735 168 322 2.41E-35 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 Pfam PF00107 Zinc-binding dehydrogenase 202 318 5.0E-21 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 Gene3D G3DSA:3.40.50.720 193 314 1.0E-34 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 Gene3D G3DSA:3.90.180.10 9 192 5.5E-51 T 25-04-2017 IPR011032 GroES-like A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 85 99 - T 25-04-2017 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 42 155 1.6E-28 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 SUPERFAMILY SSF50129 19 199 7.23E-49 T 25-04-2017 IPR011032 GroES-like A4U88_RS17790 5d2faecf57eb7c01b62578c3d9045b50 370 SMART SM00829 25 366 0.002 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS11935 f95476262771407b75f1eca179415f40 152 Gene3D G3DSA:3.90.960.10 1 151 2.4E-46 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS11935 f95476262771407b75f1eca179415f40 152 SUPERFAMILY SSF55826 4 151 1.7E-38 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS11935 f95476262771407b75f1eca179415f40 152 Pfam PF04073 Aminoacyl-tRNA editing domain 24 140 9.7E-27 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS11970 c2b48bacd48df559ad4f1ea0c02f390d 184 SUPERFAMILY SSF52218 1 166 4.85E-41 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS11970 c2b48bacd48df559ad4f1ea0c02f390d 184 Pfam PF02525 Flavodoxin-like fold 1 166 4.1E-40 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS11970 c2b48bacd48df559ad4f1ea0c02f390d 184 Gene3D G3DSA:3.40.50.360 1 166 2.0E-41 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08710 ee41df3137d5a44cc242b4cac0e02099 486 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 87 469 1.3E-107 T 25-04-2017 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 A4U88_RS08710 ee41df3137d5a44cc242b4cac0e02099 486 Pfam PF02386 Cation transport protein 42 480 3.2E-97 T 25-04-2017 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 A4U88_RS08710 ee41df3137d5a44cc242b4cac0e02099 486 PIRSF PIRSF006247 2 486 2.6E-164 T 25-04-2017 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 A4U88_RS16090 81518c853508da191a84a6b74206129c 241 Gene3D G3DSA:3.40.50.300 15 190 3.2E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16090 81518c853508da191a84a6b74206129c 241 SUPERFAMILY SSF52540 14 187 3.49E-11 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 25-04-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 Gene3D G3DSA:3.20.20.140 2 257 8.9E-87 T 25-04-2017 A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 SUPERFAMILY SSF51556 1 257 7.47E-87 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 3.4E-93 T 25-04-2017 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 Pfam PF01026 TatD related DNase 4 255 3.5E-77 T 25-04-2017 IPR001130 TatD family GO:0016788 A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 25-04-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 A4U88_RS09240 fcc5634b795170b8c5f472aa19c2cb8e 258 PIRSF PIRSF005902 1 258 1.5E-75 T 25-04-2017 IPR001130 TatD family GO:0016788 A4U88_RS19450 df7e6a8788827eecbccc7623b6fbe234 167 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 34 1.2E-6 T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS19450 df7e6a8788827eecbccc7623b6fbe234 167 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 12 32 1.4E-6 T 25-04-2017 IPR012902 Prokaryotic N-terminal methylation site A4U88_RS19450 df7e6a8788827eecbccc7623b6fbe234 167 SUPERFAMILY SSF54523 16 155 8.63E-9 T 25-04-2017 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 230 36.827 T 25-04-2017 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 SUPERFAMILY SSF56808 6 198 4.71E-72 T 25-04-2017 IPR023674 Ribosomal protein L1-like A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 25-04-2017 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 Gene3D G3DSA:3.30.190.20 161 199 1.3E-33 T 25-04-2017 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 Gene3D G3DSA:3.30.190.20 17 68 1.3E-33 T 25-04-2017 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 199 3.3E-93 T 25-04-2017 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 Pfam PF00687 Ribosomal protein L1p/L10e family 30 199 1.1E-46 T 25-04-2017 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 PIRSF PIRSF002155 1 213 1.3E-67 T 25-04-2017 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS01155 64f26fe338755b328700a73103a7df1c 233 Gene3D G3DSA:3.40.50.790 69 159 1.9E-41 T 25-04-2017 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich A4U88_RS08780 d3084d02e4c66ef84caa7f38ee92eb3a 188 Pfam PF13302 Acetyltransferase (GNAT) domain 10 150 4.7E-27 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS08780 d3084d02e4c66ef84caa7f38ee92eb3a 188 SUPERFAMILY SSF55729 4 174 8.47E-41 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS08780 d3084d02e4c66ef84caa7f38ee92eb3a 188 Gene3D G3DSA:3.40.630.30 4 174 3.5E-44 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06245 9680024982a438ccaddec71e4fd5f248 91 Pfam PF02583 Metal-sensitive transcriptional repressor 8 87 1.1E-23 T 25-04-2017 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 A4U88_RS09765 93516aad0b6b422985aabfb36fca7faa 234 Gene3D G3DSA:3.40.50.300 6 228 1.2E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09765 93516aad0b6b422985aabfb36fca7faa 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS09765 93516aad0b6b422985aabfb36fca7faa 234 SMART SM00382 35 223 7.5E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS09765 93516aad0b6b422985aabfb36fca7faa 234 Pfam PF00005 ABC transporter 26 174 7.0E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS09765 93516aad0b6b422985aabfb36fca7faa 234 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 4.1E-109 T 25-04-2017 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 A4U88_RS09765 93516aad0b6b422985aabfb36fca7faa 234 SUPERFAMILY SSF52540 6 226 4.93E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04815 be5d6b30fdf39fdd2e653faec168d6b8 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 8.0E-76 T 25-04-2017 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 A4U88_RS04815 be5d6b30fdf39fdd2e653faec168d6b8 149 Pfam PF03477 ATP cone domain 50 136 8.2E-16 T 25-04-2017 IPR005144 ATP-cone domain Reactome: R-HSA-499943 A4U88_RS04815 be5d6b30fdf39fdd2e653faec168d6b8 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.297 T 25-04-2017 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 A4U88_RS10465 4e8608e96829eadc165d7b2bc7ce9438 377 Gene3D G3DSA:3.40.50.1980 179 352 3.0E-24 T 25-04-2017 A4U88_RS10465 4e8608e96829eadc165d7b2bc7ce9438 377 Pfam PF01497 Periplasmic binding protein 100 319 2.3E-23 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS10465 4e8608e96829eadc165d7b2bc7ce9438 377 Gene3D G3DSA:3.40.50.1980 42 178 2.5E-16 T 25-04-2017 A4U88_RS10465 4e8608e96829eadc165d7b2bc7ce9438 377 SUPERFAMILY SSF53807 30 363 1.92E-49 T 25-04-2017 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 Pfam PF01546 Peptidase family M20/M25/M40 72 383 1.5E-35 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 SUPERFAMILY SSF55031 183 289 1.1E-29 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 SUPERFAMILY SSF53187 297 386 1.69E-84 T 25-04-2017 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 SUPERFAMILY SSF53187 2 196 1.69E-84 T 25-04-2017 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 Gene3D G3DSA:3.40.630.10 2 177 3.0E-95 T 25-04-2017 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 Gene3D G3DSA:3.40.630.10 297 387 3.0E-95 T 25-04-2017 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 PIRSF PIRSF005962 1 387 2.6E-123 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 13 374 9.1E-104 T 25-04-2017 IPR017439 Amidohydrolase GO:0016787 A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 Gene3D G3DSA:3.30.70.360 180 296 4.4E-40 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS12815 bef0753199dc34ffa91e4a6f7e6569bd 387 Pfam PF07687 Peptidase dimerisation domain 186 279 2.2E-12 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS14660 2efc6759db2ddc4a68e14f60e5896925 239 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 12 146 4.4E-33 T 25-04-2017 IPR017748 Type VI secretion system-associated, BMAA0400 A4U88_RS14660 2efc6759db2ddc4a68e14f60e5896925 239 Gene3D G3DSA:3.40.1730.10 10 233 5.3E-68 T 25-04-2017 A4U88_RS14660 2efc6759db2ddc4a68e14f60e5896925 239 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 12 146 1.5E-46 T 25-04-2017 IPR017748 Type VI secretion system-associated, BMAA0400 A4U88_RS14660 2efc6759db2ddc4a68e14f60e5896925 239 PIRSF PIRSF029287 3 227 2.8E-49 T 25-04-2017 IPR017748 Type VI secretion system-associated, BMAA0400 A4U88_RS05665 2d11b6b373610bcada88a1c3eef66f7a 310 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 300 1.8E-76 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS05665 2d11b6b373610bcada88a1c3eef66f7a 310 Gene3D G3DSA:3.90.245.10 1 309 5.5E-114 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS05665 2d11b6b373610bcada88a1c3eef66f7a 310 SUPERFAMILY SSF53590 2 309 5.23E-106 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS05665 2d11b6b373610bcada88a1c3eef66f7a 310 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 8 18 - T 25-04-2017 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 A4U88_RS17860 a1d5575e8862089842b3f95bcdc2ac86 224 SUPERFAMILY SSF55166 94 179 2.79E-20 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS17860 a1d5575e8862089842b3f95bcdc2ac86 224 SUPERFAMILY SSF55166 19 67 2.79E-20 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS17860 a1d5575e8862089842b3f95bcdc2ac86 224 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 21 177 7.7E-39 T 25-04-2017 IPR003709 Peptidase M15B GO:0006508|GO:0008233 A4U88_RS13800 2dd1411b17228490112d6bdb6d617ee3 280 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 9 278 1.1E-112 T 25-04-2017 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 A4U88_RS13800 2dd1411b17228490112d6bdb6d617ee3 280 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 8 278 7.7E-145 T 25-04-2017 IPR018405 Phosphotransferase system, mannose/fructose/sorbose family IID component, subgroup GO:0009401|GO:0016021 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 Pfam PF00342 Phosphoglucose isomerase 52 541 7.6E-255 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 Gene3D G3DSA:3.40.50.10490 4 102 1.3E-180 T 25-04-2017 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 Gene3D G3DSA:3.40.50.10490 263 501 1.3E-180 T 25-04-2017 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 Gene3D G3DSA:3.40.50.10490 147 184 1.3E-180 T 25-04-2017 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 25-04-2017 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 3.7E-55 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 3.7E-55 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 3.7E-55 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 3.7E-55 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 3.7E-55 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 3.7E-55 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 25-04-2017 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 Gene3D G3DSA:1.10.1390.10 502 548 7.7E-22 T 25-04-2017 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 SUPERFAMILY SSF53697 5 547 5.28E-227 T 25-04-2017 A4U88_RS21995 ece8eccc7c1e72ee51538fcaf3563fab 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.754 T 25-04-2017 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 A4U88_RS00460 861c1819fef7573bc2176aa1ef52e960 67 TIGRFAM TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT 3 60 2.3E-24 T 25-04-2017 IPR019995 Cellulose biosynthesis, BcsF/YhjT A4U88_RS00460 861c1819fef7573bc2176aa1ef52e960 67 Pfam PF11120 Cellulose biosynthesis protein BcsF 3 60 3.1E-30 T 25-04-2017 IPR019995 Cellulose biosynthesis, BcsF/YhjT A4U88_RS00460 861c1819fef7573bc2176aa1ef52e960 67 ProDom PD053231 YHJT MEMBRANE INNER BCSF 2 63 1.0E-6 T 25-04-2017 IPR019995 Cellulose biosynthesis, BcsF/YhjT A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 94 111 - T 25-04-2017 IPR018046 Pili assembly chaperone, conserved site A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 PRINTS PR00969 Pili chaperone signature 153 168 1.9E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 PRINTS PR00969 Pili chaperone signature 95 112 1.9E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 PRINTS PR00969 Pili chaperone signature 20 29 1.9E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 PRINTS PR00969 Pili chaperone signature 67 88 1.9E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 PRINTS PR00969 Pili chaperone signature 118 133 1.9E-31 T 25-04-2017 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 19 137 5.1E-42 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 Gene3D G3DSA:2.60.40.1070 140 222 2.6E-21 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 SUPERFAMILY SSF49354 14 136 1.86E-41 T 25-04-2017 IPR008962 PapD-like A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 SUPERFAMILY SSF49584 130 221 1.83E-18 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 158 219 1.9E-16 T 25-04-2017 IPR016148 Pili assembly chaperone, C-terminal A4U88_RS07390 244ea8a00ee27ab5bfbfcd606aa1fe13 227 Gene3D G3DSA:2.60.40.360 19 137 4.8E-44 T 25-04-2017 IPR008962 PapD-like A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 Gene3D G3DSA:3.40.1670.10 348 465 2.0E-55 T 25-04-2017 A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 Gene3D G3DSA:1.20.5.570 466 503 2.7E-20 T 25-04-2017 A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 17 466 6.6E-185 T 25-04-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 22 442 2.2E-173 T 25-04-2017 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 12 498 74.694 T 25-04-2017 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 SUPERFAMILY SSF50475 14 333 1.84E-129 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS01025 79d7d85970b8383538ed6d9df8f5fac3 506 SUPERFAMILY SSF143968 334 497 1.31E-67 T 25-04-2017 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Gene3D G3DSA:3.20.20.60 485 789 1.1E-102 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 417 428 - T 25-04-2017 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 387 458 6.8E-27 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 PIRSF PIRSF000854 7 792 0.0 T 25-04-2017 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Gene3D G3DSA:3.50.30.10 377 473 1.6E-36 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 697 715 - T 25-04-2017 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 485 788 1.6E-59 T 25-04-2017 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Gene3D G3DSA:3.30.470.20 200 352 1.0E-60 T 25-04-2017 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 SUPERFAMILY SSF51621 470 788 1.26E-95 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 348 7.2E-119 T 25-04-2017 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 790 0.0 T 25-04-2017 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 SUPERFAMILY SSF56059 9 388 9.65E-108 T 25-04-2017 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 SUPERFAMILY SSF52009 351 469 2.62E-35 T 25-04-2017 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 A4U88_RS10640 57a1e68e3134a5759f2ad0daed8a7a7c 792 Gene3D G3DSA:3.30.1490.20 10 198 1.8E-67 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS09525 948d2b3f00352542b9895c9d3a81ab4b 346 Pfam PF02653 Branched-chain amino acid transport system / permease component 65 335 4.7E-47 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 25-04-2017 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 Hamap MF_00577 Urocanate hydratase [hutU]. 3 556 50.756 T 25-04-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 SUPERFAMILY SSF111326 8 555 2.22E-265 T 25-04-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 Gene3D G3DSA:3.40.1770.10 8 141 7.7E-165 T 25-04-2017 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 Gene3D G3DSA:3.40.1770.10 360 555 7.7E-165 T 25-04-2017 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 PIRSF PIRSF001423 2 561 5.4E-299 T 25-04-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 0.0 T 25-04-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 Pfam PF01175 Urocanase 12 547 3.0E-265 T 25-04-2017 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 A4U88_RS03565 f800094eff788b696e279f71e1ac3e49 563 Gene3D G3DSA:3.40.50.10730 142 349 3.2E-97 T 25-04-2017 A4U88_RS14645 9b77c23172f755c8a30c3809fdf2379e 448 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 442 1.4E-156 T 25-04-2017 IPR010263 Type VI secretion protein, VC_A0114 A4U88_RS14645 9b77c23172f755c8a30c3809fdf2379e 448 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 6 443 1.4E-143 T 25-04-2017 IPR010263 Type VI secretion protein, VC_A0114 A4U88_RS13520 015b1659fc5158ab69de349c18264679 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 2.7E-24 T 25-04-2017 IPR006175 YjgF/YER057c/UK114 family A4U88_RS13520 015b1659fc5158ab69de349c18264679 114 Gene3D G3DSA:3.30.1330.40 7 113 9.5E-20 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS13520 015b1659fc5158ab69de349c18264679 114 SUPERFAMILY SSF55298 3 113 5.03E-26 T 25-04-2017 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like A4U88_RS12485 458830de380b79059069d0d3e832944b 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 4 282 2.2E-145 T 25-04-2017 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 PIRSF PIRSF001359 1 284 5.5E-111 T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 SUPERFAMILY SSF51569 3 283 8.2E-98 T 25-04-2017 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 282 1.4E-100 T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 84 - T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 7 282 2.5E-96 T 25-04-2017 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 A4U88_RS12485 458830de380b79059069d0d3e832944b 284 Gene3D G3DSA:3.20.20.70 1 283 3.3E-109 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.30.70.870 304 399 1.2E-36 T 25-04-2017 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 194 3.2E-57 T 25-04-2017 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.40.50.300 3 206 1.3E-65 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 134 1.1E-25 T 25-04-2017 IPR005225 Small GTP-binding protein domain GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:2.40.30.10 207 303 4.0E-24 T 25-04-2017 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.0E-9 T 25-04-2017 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF54980 302 387 5.76E-15 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 87 98 9.6E-15 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 9.6E-15 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 9.6E-15 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 9.6E-15 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 9.6E-15 T 25-04-2017 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF54980 398 512 4.65E-25 T 25-04-2017 IPR009022 Elongation factor G, III-V domain A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 25-04-2017 IPR031157 Tr-type G domain, conserved site A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 3.5E-289 T 25-04-2017 IPR006298 GTP-binding protein TypA GO:0005525 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF52540 3 219 5.27E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Pfam PF00679 Elongation factor G C-terminus 397 477 1.1E-20 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 SUPERFAMILY SSF50447 151 299 7.95E-31 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:2.40.50.250 483 577 4.8E-40 T 25-04-2017 A4U88_RS23915 f0d676db11555247c41349b9dd6d32bc 607 Gene3D G3DSA:3.30.70.240 400 478 4.9E-30 T 25-04-2017 IPR000640 Translation elongation factor EFG, V domain A4U88_RS10950 2a0b8d5d8d93c28b423358ae0c75de13 395 Pfam PF03594 Benzoate membrane transport protein 11 384 2.2E-142 T 25-04-2017 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 A4U88_RS10950 2a0b8d5d8d93c28b423358ae0c75de13 395 TIGRFAM TIGR00843 benE: benzoate transporter 5 386 2.7E-147 T 25-04-2017 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 A4U88_RS10990 d0672e3b6e947cf939653f9b1766cdd3 361 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 19 360 3.2E-140 T 25-04-2017 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 A4U88_RS10990 d0672e3b6e947cf939653f9b1766cdd3 361 Pfam PF03116 NQR2, RnfD, RnfE family 16 359 8.6E-109 T 25-04-2017 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 A4U88_RS10990 d0672e3b6e947cf939653f9b1766cdd3 361 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 14 361 28.683 T 25-04-2017 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 5.2E-124 T 25-04-2017 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 89 2.6E-25 T 25-04-2017 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.969 T 25-04-2017 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 2.6E-7 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.4E-9 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 1.6E-7 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Gene3D G3DSA:2.160.10.10 100 138 2.6E-11 T 25-04-2017 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 Gene3D G3DSA:2.160.10.10 139 309 8.0E-43 T 25-04-2017 A4U88_RS19225 141f2ca5ef5df7b9f3ca5b63730903b7 340 SUPERFAMILY SSF51161 33 316 2.72E-88 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS10590 60b1ca14ade65f218d03ddd846d7c638 261 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS10590 60b1ca14ade65f218d03ddd846d7c638 261 Pfam PF00005 ABC transporter 23 171 3.6E-25 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS10590 60b1ca14ade65f218d03ddd846d7c638 261 SUPERFAMILY SSF52540 7 233 2.5E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10590 60b1ca14ade65f218d03ddd846d7c638 261 Gene3D G3DSA:3.40.50.300 9 239 1.0E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS10590 60b1ca14ade65f218d03ddd846d7c638 261 SMART SM00382 31 220 5.6E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 293 458 1.4E-17 T 25-04-2017 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 SUPERFAMILY SSF53067 253 502 4.96E-48 T 25-04-2017 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 PIRSF PIRSF000538 2 510 3.6E-116 T 25-04-2017 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 SUPERFAMILY SSF53067 4 253 1.24E-57 T 25-04-2017 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 Gene3D G3DSA:3.30.420.40 2 251 3.6E-58 T 25-04-2017 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 Gene3D G3DSA:3.30.420.40 254 506 5.7E-40 T 25-04-2017 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 251 1.7E-51 T 25-04-2017 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 A4U88_RS06675 0ea01d7cc795f8b7fd0adc8f9eb89d8e 521 Hamap MF_02053 Autoinducer-2 kinase [lsrK]. 6 521 78.19 T 25-04-2017 IPR033676 Autoinducer-2 kinase GO:0009372|GO:0071518 A4U88_RS07165 f7741eccc21b19fc29f965700ccec1e6 336 Gene3D G3DSA:3.40.50.150 124 228 2.0E-9 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS07165 f7741eccc21b19fc29f965700ccec1e6 336 Pfam PF05971 Protein of unknown function (DUF890) 25 323 4.9E-128 T 25-04-2017 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 A4U88_RS07165 f7741eccc21b19fc29f965700ccec1e6 336 SUPERFAMILY SSF53335 63 323 1.05E-27 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS07165 f7741eccc21b19fc29f965700ccec1e6 336 PIRSF PIRSF029038 15 335 3.2E-154 T 25-04-2017 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 A4U88_RS07165 f7741eccc21b19fc29f965700ccec1e6 336 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 26 325 54.779 T 25-04-2017 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 A4U88_RS20675 d0a98c27a4310d22d00eddf435d54bb4 304 Gene3D G3DSA:3.40.50.1820 52 299 7.4E-66 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS20675 d0a98c27a4310d22d00eddf435d54bb4 304 SUPERFAMILY SSF53474 40 295 1.13E-52 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS20675 d0a98c27a4310d22d00eddf435d54bb4 304 Pfam PF00756 Putative esterase 61 225 1.7E-17 T 25-04-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 A4U88_RS13080 ed76bf6828e56f3718b49ed06a941b4b 217 Pfam PF02677 Uncharacterized BCR, COG1636 18 192 1.4E-63 T 25-04-2017 IPR003828 Protein of unknown function DUF208 A4U88_RS13445 b488fa77fe73ad9e2675107c43365358 521 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 9.6E-277 T 25-04-2017 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 A4U88_RS13445 b488fa77fe73ad9e2675107c43365358 521 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 511 9.4E-276 T 25-04-2017 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 A4U88_RS13445 b488fa77fe73ad9e2675107c43365358 521 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 521 356.389 T 25-04-2017 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 A4U88_RS15170 58274bd0de75ec44f28ea9f35623aa7b 150 Pfam PF06995 Phage P2 GpU 6 125 1.1E-44 T 25-04-2017 IPR009734 Myoviridae, GpU A4U88_RS15170 58274bd0de75ec44f28ea9f35623aa7b 150 PIRSF PIRSF029208 1 147 2.9E-60 T 25-04-2017 IPR016912 Bacteriophage P2, GpU A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 1.5E-39 T 25-04-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 25-04-2017 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 20.029 T 25-04-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 1.1E-22 T 25-04-2017 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 SMART SM00739 4 31 0.0011 T 25-04-2017 IPR005824 KOW A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 Gene3D G3DSA:2.30.30.30 3 92 7.1E-22 T 25-04-2017 IPR014722 Ribosomal protein L2 domain 2 A4U88_RS22290 6747b3f7225f19e4302af2034358a2c9 104 SUPERFAMILY SSF50104 4 100 6.02E-33 T 25-04-2017 IPR008991 Translation protein SH3-like domain A4U88_RS04335 c38f3f867862f5d24d691f7079a3c1d4 322 Pfam PF12833 Helix-turn-helix domain 239 319 5.7E-19 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04335 c38f3f867862f5d24d691f7079a3c1d4 322 SUPERFAMILY SSF46689 268 320 1.48E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04335 c38f3f867862f5d24d691f7079a3c1d4 322 Gene3D G3DSA:1.10.10.60 268 320 4.1E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04335 c38f3f867862f5d24d691f7079a3c1d4 322 SMART SM00342 233 318 1.6E-20 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 SUPERFAMILY SSF56954 4 467 8.24E-90 T 25-04-2017 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 14 465 5.5E-90 T 25-04-2017 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Gene3D G3DSA:1.20.1600.10 141 314 5.3E-86 T 25-04-2017 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Gene3D G3DSA:1.20.1600.10 53 90 5.3E-86 T 25-04-2017 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Gene3D G3DSA:1.20.1600.10 352 466 5.3E-86 T 25-04-2017 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Pfam PF02321 Outer membrane efflux protein 284 463 2.0E-16 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Pfam PF02321 Outer membrane efflux protein 64 253 9.4E-17 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Gene3D G3DSA:2.20.200.10 101 140 1.5E-5 T 25-04-2017 A4U88_RS12040 79a69b40c4481690e4de6b388e5cd60b 492 Gene3D G3DSA:2.20.200.10 315 347 1.5E-5 T 25-04-2017 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 Pfam PF13377 Periplasmic binding protein-like domain 179 338 6.6E-33 T 25-04-2017 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 SUPERFAMILY SSF47413 7 70 2.92E-12 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 SUPERFAMILY SSF53822 72 339 6.48E-68 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 7 26 - T 25-04-2017 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 59 9.3E-8 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 Gene3D G3DSA:1.10.260.40 8 64 1.1E-19 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 Gene3D G3DSA:3.40.50.2300 65 182 5.0E-40 T 25-04-2017 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 SMART SM00354 7 82 1.5E-19 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS05050 25ef5f4ee2bfaf436f6d12b63944e317 344 Gene3D G3DSA:3.40.50.2300 183 321 8.0E-46 T 25-04-2017 A4U88_RS05140 1999be5664fc6a9b72e3681b175148af 117 Gene3D G3DSA:3.40.1260.10 1 117 6.5E-41 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS05140 1999be5664fc6a9b72e3681b175148af 117 SUPERFAMILY SSF75169 1 117 6.15E-32 T 25-04-2017 IPR027396 DsrEFH-like A4U88_RS05140 1999be5664fc6a9b72e3681b175148af 117 Pfam PF02635 DsrE/DsrF-like family 3 117 9.4E-21 T 25-04-2017 IPR003787 Sulphur relay, DsrE/F-like protein A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 8.2E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 8.2E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 8.2E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 Pfam PF03466 LysR substrate binding domain 93 294 2.6E-42 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 Gene3D G3DSA:3.40.190.10 178 264 6.0E-21 T 25-04-2017 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.5E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 Gene3D G3DSA:3.40.190.10 92 177 3.5E-20 T 25-04-2017 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 Gene3D G3DSA:1.10.10.10 1 84 1.2E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 SUPERFAMILY SSF53850 93 296 2.17E-42 T 25-04-2017 A4U88_RS02475 4faf5a874fcc0f29f3ed633f34a1906c 299 SUPERFAMILY SSF46785 3 86 4.27E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00475 b3ca178c84bea505cd3851f78a67b4b7 246 SUPERFAMILY SSF52540 1 236 3.9E-27 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00475 b3ca178c84bea505cd3851f78a67b4b7 246 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 240 8.7E-80 T 25-04-2017 IPR017746 Cellulose synthase operon protein BcsQ A4U88_RS00475 b3ca178c84bea505cd3851f78a67b4b7 246 Gene3D G3DSA:3.40.50.300 1 238 2.7E-26 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00475 b3ca178c84bea505cd3851f78a67b4b7 246 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 237 1.5E-105 T 25-04-2017 IPR017746 Cellulose synthase operon protein BcsQ A4U88_RS07600 e00fbb4a8fe27bd45d8cce08bf59fc00 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 4 226 1.2E-99 T 25-04-2017 IPR005261 Conserved hypothetical protein CHP00659 A4U88_RS07600 e00fbb4a8fe27bd45d8cce08bf59fc00 231 Pfam PF04172 LrgB-like family 12 223 9.3E-82 T 25-04-2017 IPR007300 CidB/LrgB family A4U88_RS16350 c3aaeef6308fce2cb73db85803b90e7a 140 SUPERFAMILY SSF55811 3 134 6.91E-33 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS16350 c3aaeef6308fce2cb73db85803b90e7a 140 Pfam PF00293 NUDIX domain 5 127 3.8E-26 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS16350 c3aaeef6308fce2cb73db85803b90e7a 140 PRINTS PR00502 NUDIX hydrolase family signature 45 60 4.3E-8 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS16350 c3aaeef6308fce2cb73db85803b90e7a 140 PRINTS PR00502 NUDIX hydrolase family signature 31 45 4.3E-8 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS16350 c3aaeef6308fce2cb73db85803b90e7a 140 Gene3D G3DSA:3.90.79.10 2 133 1.0E-33 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS16350 c3aaeef6308fce2cb73db85803b90e7a 140 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS03730 f5eb293c4e9fd3a9bc75b27c71903ef9 253 SUPERFAMILY SSF88713 1 253 1.89E-74 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS03730 f5eb293c4e9fd3a9bc75b27c71903ef9 253 Pfam PF04794 YdjC-like protein 5 241 8.4E-60 T 25-04-2017 IPR006879 Chitooligosaccharide deacetylase ChbG-like A4U88_RS03730 f5eb293c4e9fd3a9bc75b27c71903ef9 253 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 250 41.452 T 25-04-2017 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 A4U88_RS03730 f5eb293c4e9fd3a9bc75b27c71903ef9 253 Gene3D G3DSA:3.20.20.370 1 253 8.3E-79 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 6 268 2.5E-66 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 Gene3D G3DSA:3.10.310.10 119 262 2.8E-43 T 25-04-2017 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 SUPERFAMILY SSF54506 139 271 6.06E-40 T 25-04-2017 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 Pfam PF01678 Diaminopimelate epimerase 153 266 5.4E-24 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 Pfam PF01678 Diaminopimelate epimerase 6 123 5.0E-22 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 SUPERFAMILY SSF54506 5 129 6.28E-29 T 25-04-2017 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 Gene3D G3DSA:3.10.310.10 4 118 4.1E-38 T 25-04-2017 A4U88_RS06725 2b68f0ea71449cb47b861b27f109ae13 291 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 4 274 30.432 T 25-04-2017 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 A4U88_RS12450 1398b97e8946be14f12bcd999f4ac559 313 Gene3D G3DSA:1.10.3720.10 80 309 7.1E-59 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12450 1398b97e8946be14f12bcd999f4ac559 313 SUPERFAMILY SSF161098 75 302 5.89E-60 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12450 1398b97e8946be14f12bcd999f4ac559 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 311 5.6E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17390 915dfd7ef5ab3211eae47055808e6640 179 Gene3D G3DSA:3.40.630.30 2 172 1.1E-44 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17390 915dfd7ef5ab3211eae47055808e6640 179 SUPERFAMILY SSF55729 2 171 1.53E-45 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17390 915dfd7ef5ab3211eae47055808e6640 179 Pfam PF13302 Acetyltransferase (GNAT) domain 7 147 2.8E-26 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS03045 49f22258f5a01ec379113c56a6b92383 265 Pfam PF01184 GPR1/FUN34/yaaH family 68 247 2.8E-42 T 25-04-2017 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 SUPERFAMILY SSF52096 25 283 1.8E-88 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 38.337 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 Pfam PF01039 Carboxyl transferase domain 102 297 3.8E-17 T 25-04-2017 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 Gene3D G3DSA:3.90.226.10 18 285 1.6E-78 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 1.2E-148 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 2.7E-36 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 2.7E-36 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 2.7E-36 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 2.7E-36 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS17020 0dca2cce33f00a9d9e4baf2fdc4a23d2 302 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 2.7E-36 T 25-04-2017 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 A4U88_RS21500 4d7b097b6dd5108d1e1373683cbfc0f5 293 Pfam PF00551 Formyl transferase 105 189 4.2E-9 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS21500 4d7b097b6dd5108d1e1373683cbfc0f5 293 Gene3D G3DSA:3.40.50.170 86 223 8.5E-18 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS21500 4d7b097b6dd5108d1e1373683cbfc0f5 293 SUPERFAMILY SSF53328 73 224 2.22E-21 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS06925 ffb1a4592d3925773806951dd3236b22 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 20 202 2.5E-35 T 25-04-2017 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal A4U88_RS06925 ffb1a4592d3925773806951dd3236b22 341 Pfam PF12833 Helix-turn-helix domain 253 330 2.8E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS06925 ffb1a4592d3925773806951dd3236b22 341 SMART SM00342 247 329 8.3E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS06925 ffb1a4592d3925773806951dd3236b22 341 SUPERFAMILY SSF46689 283 332 1.66E-10 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS06925 ffb1a4592d3925773806951dd3236b22 341 Gene3D G3DSA:1.10.10.60 283 332 3.3E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07115 516da763efec6229d2d062f576051a21 483 Gene3D G3DSA:3.30.1330.120 287 426 3.2E-63 T 25-04-2017 A4U88_RS07115 516da763efec6229d2d062f576051a21 483 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 13 483 2.6E-259 T 25-04-2017 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79 A4U88_RS07115 516da763efec6229d2d062f576051a21 483 Pfam PF03972 MmgE/PrpD family 18 465 1.7E-157 T 25-04-2017 IPR005656 MmgE/PrpD GO:0016829 A4U88_RS07115 516da763efec6229d2d062f576051a21 483 SUPERFAMILY SSF103378 13 482 5.49E-156 T 25-04-2017 IPR005656 MmgE/PrpD GO:0016829 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 2.1E-7 T 25-04-2017 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 SUPERFAMILY SSF55811 79 241 3.66E-39 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 255 42.927 T 25-04-2017 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 SUPERFAMILY SSF55811 3 96 3.28E-31 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 Pfam PF00293 NUDIX domain 131 234 2.5E-17 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS01235 7e9d43a689b74ff1e5025659813deffa 255 Gene3D G3DSA:3.90.79.10 93 246 9.9E-40 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 Gene3D G3DSA:3.40.190.10 83 189 2.2E-20 T 25-04-2017 A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 SUPERFAMILY SSF46785 1 109 1.14E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 Gene3D G3DSA:1.10.10.10 1 81 1.6E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 SUPERFAMILY SSF53850 85 289 3.98E-35 T 25-04-2017 A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.9E-18 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 Pfam PF03466 LysR substrate binding domain 85 285 2.6E-36 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS07545 1f773250c926d0de274e1dc7aa53dcaf 306 Gene3D G3DSA:3.40.190.10 190 255 5.0E-11 T 25-04-2017 A4U88_RS11425 68853caa1d7bbdb5d07d0046b807cca0 117 Pfam PF02974 Protease inhibitor Inh 16 108 6.7E-20 T 25-04-2017 IPR021140 Alkaline proteinase inhibitor/ Outer membrane lipoprotein Omp19 A4U88_RS11425 68853caa1d7bbdb5d07d0046b807cca0 117 Gene3D G3DSA:2.40.128.10 11 108 9.4E-28 T 25-04-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 A4U88_RS11425 68853caa1d7bbdb5d07d0046b807cca0 117 SUPERFAMILY SSF50882 11 109 9.68E-22 T 25-04-2017 IPR016085 Protease inhibitor, beta-barrel domain GO:0004866 A4U88_RS11425 68853caa1d7bbdb5d07d0046b807cca0 117 ProDom PD015804 INHIBITOR PROTEASE METALLOPROTEASE PROTEINASE PRECURSOR SIGNAL PERIPLASMIC METALLOENZYME ALKALINE PRTA-SPECIFIC 19 111 3.0E-10 T 25-04-2017 IPR003086 Metalloprotease inhibitor I38 GO:0004866|GO:0030288 A4U88_RS11425 68853caa1d7bbdb5d07d0046b807cca0 117 PRINTS PR01274 Metalloprotease inhibitor signature 11 27 1.1E-5 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS11425 68853caa1d7bbdb5d07d0046b807cca0 117 PRINTS PR01274 Metalloprotease inhibitor signature 77 90 1.1E-5 T 25-04-2017 IPR022815 Protease inhibitor I38 A4U88_RS22640 ec2c53f2ca55972b319acbaca153410d 337 SUPERFAMILY SSF110997 252 317 1.96E-5 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS22640 ec2c53f2ca55972b319acbaca153410d 337 Hamap MF_02021 Cell division protein DamX [damX]. 1 337 27.203 T 25-04-2017 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 A4U88_RS22640 ec2c53f2ca55972b319acbaca153410d 337 Pfam PF05036 Sporulation related domain 253 326 3.1E-11 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS22640 ec2c53f2ca55972b319acbaca153410d 337 Gene3D G3DSA:3.30.70.1070 251 315 1.5E-4 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS00265 6c10fbaccc0020208d3f9b9db69360f9 329 Pfam PF01757 Acyltransferase family 6 313 9.8E-28 T 25-04-2017 IPR002656 Acyltransferase 3 GO:0016747 A4U88_RS00265 6c10fbaccc0020208d3f9b9db69360f9 329 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 325 35.972 T 25-04-2017 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 Gene3D G3DSA:3.40.190.10 150 302 1.6E-30 T 25-04-2017 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 139 155 1.3E-6 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 65 86 1.3E-6 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 279 298 1.3E-6 T 25-04-2017 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 Gene3D G3DSA:3.40.190.10 303 330 2.7E-31 T 25-04-2017 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 Gene3D G3DSA:3.40.190.10 37 148 2.7E-31 T 25-04-2017 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 Pfam PF13416 Bacterial extracellular solute-binding protein 59 329 4.2E-28 T 25-04-2017 A4U88_RS18530 bf8918e7e5c2a470ec8fc70453dd2ff1 384 SUPERFAMILY SSF53850 36 358 1.04E-57 T 25-04-2017 A4U88_RS07720 b9a3aa04b7df27b2e72e52576b248025 124 Gene3D G3DSA:3.40.50.2020 40 116 1.9E-8 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS07720 b9a3aa04b7df27b2e72e52576b248025 124 Pfam PF00156 Phosphoribosyl transferase domain 42 91 2.8E-7 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS07720 b9a3aa04b7df27b2e72e52576b248025 124 SUPERFAMILY SSF53271 30 107 1.84E-10 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS06185 01852a7ef77d953d504db6ffaf9e9a83 251 Pfam PF13649 Methyltransferase domain 45 145 4.4E-14 T 25-04-2017 A4U88_RS06185 01852a7ef77d953d504db6ffaf9e9a83 251 SUPERFAMILY SSF53335 6 249 1.39E-28 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS06185 01852a7ef77d953d504db6ffaf9e9a83 251 Gene3D G3DSA:3.40.50.150 9 250 7.8E-31 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS18695 0869262a354e3ceed78aab3d6a544603 320 Pfam PF11187 Protein of unknown function (DUF2974) 130 207 4.7E-5 T 25-04-2017 IPR024499 Protein of unknown function DUF2974 A4U88_RS18695 0869262a354e3ceed78aab3d6a544603 320 SUPERFAMILY SSF53474 85 228 1.22E-19 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS18695 0869262a354e3ceed78aab3d6a544603 320 Gene3D G3DSA:3.40.50.1820 105 226 5.7E-12 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS08860 832037dfcc40af01dc8cab240041f410 86 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 6 83 1.7E-19 T 25-04-2017 A4U88_RS08860 832037dfcc40af01dc8cab240041f410 86 SUPERFAMILY SSF54292 8 85 3.41E-15 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS08860 832037dfcc40af01dc8cab240041f410 86 Gene3D G3DSA:3.10.20.30 20 76 5.5E-9 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 SUPERFAMILY SSF53671 7 336 5.63E-100 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 10 335 2.1E-136 T 25-04-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 55 62 - T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 159 333 1.9E-57 T 25-04-2017 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 10 150 1.6E-46 T 25-04-2017 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 137 148 2.6E-26 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 55 74 2.6E-26 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 300 323 2.6E-26 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 279 2.6E-26 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 Gene3D G3DSA:3.40.50.1370 147 322 1.2E-75 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 Gene3D G3DSA:3.40.50.1370 7 146 3.1E-57 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 53 67 3.3E-32 T 25-04-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 86 99 3.3E-32 T 25-04-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 126 140 3.3E-32 T 25-04-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 232 242 3.3E-32 T 25-04-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 PRINTS PR00102 Ornithine carbamoyltransferase signature 314 325 3.3E-32 T 25-04-2017 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 A4U88_RS02245 35ce944ea59c63ce069eadccf4bc56fb 339 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 9 336 84.206 T 25-04-2017 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 A4U88_RS05585 10cb4c0df43cab9e221ccd4b544e59f1 71 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 70 19.79 T 25-04-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 A4U88_RS05585 10cb4c0df43cab9e221ccd4b544e59f1 71 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 70 27.333 T 25-04-2017 IPR024905 Sec-independent protein translocase protein TatE A4U88_RS05585 10cb4c0df43cab9e221ccd4b544e59f1 71 Pfam PF02416 mttA/Hcf106 family 4 48 5.9E-12 T 25-04-2017 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 A4U88_RS05585 10cb4c0df43cab9e221ccd4b544e59f1 71 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 2.6E-18 T 25-04-2017 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 A4U88_RS23205 7355a3d5037b3a8a64f86436fb6aa7b5 172 Gene3D G3DSA:1.20.120.450 8 164 1.5E-24 T 25-04-2017 IPR027369 DinB/YfiT-like putative metal-dependent hydrolase A4U88_RS23205 7355a3d5037b3a8a64f86436fb6aa7b5 172 Pfam PF05163 DinB family 8 166 4.1E-24 T 25-04-2017 IPR007837 DNA damage-inducible protein DinB A4U88_RS23205 7355a3d5037b3a8a64f86436fb6aa7b5 172 SUPERFAMILY SSF109854 7 148 3.66E-29 T 25-04-2017 A4U88_RS02070 cf326bd2cc26ef9b5ca99e10ec372228 34 Pfam PF10940 Protein of unknown function (DUF2618) 8 32 2.6E-11 T 25-04-2017 IPR021237 Protein of unknown function DUF2618 A4U88_RS11645 c8095e93a562e301a31e60b103b0e078 179 Gene3D G3DSA:3.40.430.10 3 153 8.4E-29 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS11645 c8095e93a562e301a31e60b103b0e078 179 SUPERFAMILY SSF53597 5 147 6.41E-30 T 25-04-2017 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 A4U88_RS11645 c8095e93a562e301a31e60b103b0e078 179 Pfam PF01872 RibD C-terminal domain 8 144 1.3E-16 T 25-04-2017 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 A4U88_RS09160 2187bf1de5ffa0e5ee3308f1c951c044 95 Gene3D G3DSA:3.30.70.900 3 94 1.2E-31 T 25-04-2017 A4U88_RS09160 2187bf1de5ffa0e5ee3308f1c951c044 95 SUPERFAMILY SSF54909 3 83 9.91E-27 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS09160 2187bf1de5ffa0e5ee3308f1c951c044 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 77 2.7E-18 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 2.9E-131 T 25-04-2017 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 Gene3D G3DSA:3.40.366.10 197 302 1.3E-73 T 25-04-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 Gene3D G3DSA:3.40.366.10 3 122 1.3E-73 T 25-04-2017 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 PIRSF PIRSF000446 1 309 1.7E-141 T 25-04-2017 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 SUPERFAMILY SSF52151 4 122 7.32E-83 T 25-04-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 SUPERFAMILY SSF52151 190 308 7.32E-83 T 25-04-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 Gene3D G3DSA:3.30.70.250 125 196 4.1E-31 T 25-04-2017 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 SUPERFAMILY SSF55048 128 197 4.05E-18 T 25-04-2017 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 Pfam PF00698 Acyl transferase domain 6 287 6.1E-41 T 25-04-2017 IPR014043 Acyl transferase A4U88_RS09200 da4510ab8ed6dc3de08bfce9c3bf7b1f 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 307 4.1E-46 T 25-04-2017 IPR020801 Polyketide synthase, acyl transferase domain A4U88_RS13190 02f99f48f447a499881d28e39aad5949 545 Gene3D G3DSA:3.10.105.10 312 513 1.7E-62 T 25-04-2017 A4U88_RS13190 02f99f48f447a499881d28e39aad5949 545 SUPERFAMILY SSF53850 37 527 5.61E-146 T 25-04-2017 A4U88_RS13190 02f99f48f447a499881d28e39aad5949 545 Gene3D G3DSA:3.40.190.10 159 311 2.4E-54 T 25-04-2017 A4U88_RS13190 02f99f48f447a499881d28e39aad5949 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 89 110 - T 25-04-2017 IPR023765 Solute-binding protein family 5, conserved site A4U88_RS13190 02f99f48f447a499881d28e39aad5949 545 PIRSF PIRSF002741 1 544 1.8E-111 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS13190 02f99f48f447a499881d28e39aad5949 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 5.2E-89 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 8.7E-256 T 25-04-2017 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 7.9E-37 T 25-04-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 43.748 T 25-04-2017 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 SUPERFAMILY SSF110921 391 499 6.02E-27 T 25-04-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 25-04-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 SUPERFAMILY SSF51569 1 291 2.93E-101 T 25-04-2017 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 25-04-2017 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 SMART SM00917 369 500 2.4E-40 T 25-04-2017 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 Pfam PF00682 HMGL-like 4 273 2.7E-107 T 25-04-2017 IPR000891 Pyruvate carboxyltransferase GO:0003824 A4U88_RS03280 8b4f20b1da24abc500cd2ccd99abb94b 524 Gene3D G3DSA:3.20.20.70 1 347 1.7E-145 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 Pfam PF00326 Prolyl oligopeptidase family 486 690 1.2E-47 T 25-04-2017 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 SUPERFAMILY SSF53474 431 683 6.42E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 603 618 1.6E-45 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 463 481 1.6E-45 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 622 644 1.6E-45 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 490 514 1.6E-45 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 548 568 1.6E-45 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 518 537 1.6E-45 T 25-04-2017 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 SUPERFAMILY SSF50993 20 428 9.15E-56 T 25-04-2017 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 Gene3D G3DSA:3.40.50.1820 351 690 1.2E-94 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 Gene3D G3DSA:2.130.10.120 75 231 2.7E-6 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 17 237 7.2E-26 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS10960 f192f98d258dd4388b6ac69bda45ea0b 697 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 331 421 1.0E-5 T 25-04-2017 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 A4U88_RS08110 9dde0f9ac11460d0aa7cd6b27e568025 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 4 85 9.3E-14 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS08110 9dde0f9ac11460d0aa7cd6b27e568025 238 Gene3D G3DSA:1.10.3720.10 4 230 6.4E-41 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08110 9dde0f9ac11460d0aa7cd6b27e568025 238 SUPERFAMILY SSF161098 7 217 5.49E-37 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08110 9dde0f9ac11460d0aa7cd6b27e568025 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 226 1.4E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS23370 76fa0bccbf445e3f07160da9fd4f9113 410 Pfam PF07690 Major Facilitator Superfamily 21 349 7.6E-38 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS23370 76fa0bccbf445e3f07160da9fd4f9113 410 ProSitePatterns PS00217 Sugar transport proteins signature 2. 107 132 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS23370 76fa0bccbf445e3f07160da9fd4f9113 410 SUPERFAMILY SSF103473 5 396 9.94E-73 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS23370 76fa0bccbf445e3f07160da9fd4f9113 410 Gene3D G3DSA:1.20.1250.20 210 394 4.7E-23 T 25-04-2017 A4U88_RS23370 76fa0bccbf445e3f07160da9fd4f9113 410 Gene3D G3DSA:1.20.1250.20 13 197 2.5E-34 T 25-04-2017 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 Hamap MF_00820 2,3-diketo-L-gulonate reductase [dlgD]. 1 332 73.664 T 25-04-2017 IPR023689 2,3-diketo-L-gulonate reductase GO:0016616|GO:0047559|GO:0055114|GO:0070403 KEGG: 00040+1.1.1.13+1.1.1.130|KEGG: 00053+1.1.1.130|MetaCyc: PWY-6961 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 Gene3D G3DSA:3.30.1370.60 74 170 5.3E-55 T 25-04-2017 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 Gene3D G3DSA:3.30.1370.60 220 269 5.3E-55 T 25-04-2017 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 Gene3D G3DSA:1.10.1530.10 1 73 1.5E-24 T 25-04-2017 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 Pfam PF02615 Malate/L-lactate dehydrogenase 3 330 1.0E-100 T 25-04-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 Gene3D G3DSA:3.30.60.50 181 219 7.5E-21 T 25-04-2017 A4U88_RS20090 f1af786765db170d41d1b21dac175508 332 SUPERFAMILY SSF89733 1 332 4.58E-94 T 25-04-2017 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS04355 fd31d56dbc1b0d46a043010819812a47 25 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 4 24 2.1E-11 T 25-04-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 A4U88_RS04355 fd31d56dbc1b0d46a043010819812a47 25 Pfam PF08042 PqqA family 4 21 2.5E-8 T 25-04-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 A4U88_RS04355 fd31d56dbc1b0d46a043010819812a47 25 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 3 25 11.026 T 25-04-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 Gene3D G3DSA:3.50.50.60 14 118 1.3E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 Gene3D G3DSA:3.50.50.60 344 390 1.3E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 Gene3D G3DSA:3.50.50.60 171 252 1.3E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 SUPERFAMILY SSF51905 27 329 7.77E-41 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 Pfam PF01266 FAD dependent oxidoreductase 29 381 1.4E-53 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 PRINTS PR00757 Flavin-containing amine oxidase signature 29 48 4.0E-5 T 25-04-2017 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 A4U88_RS10055 bff1d1ce387c5f925f992afb44352f44 426 PRINTS PR00757 Flavin-containing amine oxidase signature 216 238 4.0E-5 T 25-04-2017 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 A4U88_RS03145 6c765dec164cf92a515c254c737c5509 204 Pfam PF01810 LysE type translocator 15 203 2.1E-35 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS03145 6c765dec164cf92a515c254c737c5509 204 PIRSF PIRSF006324 1 204 1.9E-57 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS22585 d3f29f0b5b8be31d6c3302241491cf7c 394 SUPERFAMILY SSF103473 5 389 2.49E-39 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS22585 d3f29f0b5b8be31d6c3302241491cf7c 394 Hamap MF_01044 Protein TsgA [tsgA]. 1 390 28.745 T 25-04-2017 IPR023528 Major facilitator superfamily transporter, TsgA A4U88_RS22585 d3f29f0b5b8be31d6c3302241491cf7c 394 Pfam PF07690 Major Facilitator Superfamily 14 321 7.8E-22 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS22585 d3f29f0b5b8be31d6c3302241491cf7c 394 Gene3D G3DSA:1.20.1250.20 6 199 4.6E-18 T 25-04-2017 A4U88_RS22585 d3f29f0b5b8be31d6c3302241491cf7c 394 Gene3D G3DSA:1.20.1250.20 208 386 1.5E-11 T 25-04-2017 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 SUPERFAMILY SSF51905 167 333 8.81E-13 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 Gene3D G3DSA:3.50.50.60 287 323 5.4E-4 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 Gene3D G3DSA:3.50.50.60 88 190 1.7E-12 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 Gene3D G3DSA:3.50.50.60 335 407 6.5E-4 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 4 334 9.9E-108 T 25-04-2017 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 Gene3D G3DSA:3.50.50.60 191 266 6.8E-4 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 Gene3D G3DSA:3.50.50.60 324 334 6.8E-4 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS20665 52cf9770e8d4e5a75a2efa19461d68d5 431 SUPERFAMILY SSF51905 1 221 5.06E-18 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 157 168 1.9E-38 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 87 102 1.9E-38 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 8 25 1.9E-38 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 143 153 1.9E-38 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 179 192 1.9E-38 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 PRINTS PR00988 Uridine kinase signature 42 53 1.9E-38 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 SUPERFAMILY SSF52540 6 205 2.58E-50 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 41.011 T 25-04-2017 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 TIGRFAM TIGR00235 udk: uridine kinase 6 213 1.9E-95 T 25-04-2017 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 Gene3D G3DSA:3.40.50.300 3 205 1.3E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07635 814ac31e193b08d8df0a6a08108341fc 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 5.0E-45 T 25-04-2017 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 SUPERFAMILY SSF46626 308 410 3.3E-19 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 PRINTS PR00605 Class IC cytochrome C signature 368 390 5.9E-6 T 25-04-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 PRINTS PR00605 Class IC cytochrome C signature 315 326 5.9E-6 T 25-04-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 Pfam PF00034 Cytochrome c 43 142 2.2E-8 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 SUPERFAMILY SSF46626 189 300 1.93E-11 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 307 390 6.0E-9 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 SUPERFAMILY SSF46626 32 163 2.18E-26 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 Gene3D G3DSA:1.10.760.10 308 411 4.9E-19 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 Gene3D G3DSA:1.10.760.10 39 141 1.0E-16 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 Gene3D G3DSA:1.10.760.10 186 290 9.1E-6 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS20500 7854f5c31f70e2064f33c89c5b8f25ae 411 PIRSF PIRSF000018 9 411 2.0E-125 T 25-04-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 A4U88_RS18560 2b08344b7339ee50f051d7a25ef25d37 290 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 25 237 5.0E-64 T 25-04-2017 A4U88_RS18560 2b08344b7339ee50f051d7a25ef25d37 290 Pfam PF13942 YfhG lipoprotein 64 238 1.4E-79 T 25-04-2017 IPR025262 Quorum-sensing regulator protein G A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 6.0E-6 T 25-04-2017 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 6.0E-6 T 25-04-2017 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 6.0E-6 T 25-04-2017 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 6.0E-6 T 25-04-2017 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 SUPERFAMILY SSF103473 13 194 5.75E-59 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 SUPERFAMILY SSF103473 244 452 5.75E-59 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 Pfam PF07690 Major Facilitator Superfamily 16 405 2.8E-42 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 433 2.3E-77 T 25-04-2017 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 Gene3D G3DSA:1.20.1250.20 13 187 9.9E-26 T 25-04-2017 A4U88_RS24020 39e5242d09375b77c38e193f4e97e189 471 Gene3D G3DSA:1.20.1250.20 257 454 9.5E-15 T 25-04-2017 A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 241 250 - T 25-04-2017 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 Gene3D G3DSA:3.40.640.10 61 278 5.4E-89 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 Gene3D G3DSA:3.90.1150.10 279 393 5.1E-36 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 5 397 2.0E-217 T 25-04-2017 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 Pfam PF00155 Aminotransferase class I and II 43 386 5.8E-77 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 SUPERFAMILY SSF53383 5 396 5.98E-126 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS23705 9619b6a471a721b8cc52bc1b58147f22 398 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 2 395 53.602 T 25-04-2017 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 A4U88_RS12420 e646fe94080c90d7be239263a6316871 280 Gene3D G3DSA:3.40.1190.20 13 268 1.1E-58 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS12420 e646fe94080c90d7be239263a6316871 280 SUPERFAMILY SSF53613 14 265 5.61E-53 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS12420 e646fe94080c90d7be239263a6316871 280 Pfam PF08543 Phosphomethylpyrimidine kinase 86 268 5.3E-20 T 25-04-2017 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 Gene3D G3DSA:3.40.50.300 7 237 9.8E-59 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 Pfam PF00005 ABC transporter 23 174 9.1E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 Pfam PF00005 ABC transporter 275 429 1.4E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 SMART SM00382 32 222 8.4E-7 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 SMART SM00382 283 478 0.003 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 Gene3D G3DSA:3.40.50.300 261 492 4.5E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 SUPERFAMILY SSF52540 261 488 5.85E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 SUPERFAMILY SSF52540 7 234 5.12E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23150 89a36112cbdf6e4dcf4599353e76c28c 499 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS14315 a91ba7bbd0fedbd819ebd932e609d232 122 Gene3D G3DSA:1.20.58.380 5 93 2.3E-24 T 25-04-2017 A4U88_RS14315 a91ba7bbd0fedbd819ebd932e609d232 122 Pfam PF05400 Flagellar protein FliT 21 106 4.3E-22 T 25-04-2017 IPR008622 Flagellar protein FliT A4U88_RS14315 a91ba7bbd0fedbd819ebd932e609d232 122 Hamap MF_01180 Flagellar protein FliT [fliT]. 1 120 26.241 T 25-04-2017 IPR008622 Flagellar protein FliT A4U88_RS10045 e3e84c5e708bfeb3b2d4c246bbf55d5b 142 SUPERFAMILY SSF52402 3 139 2.3E-23 T 25-04-2017 A4U88_RS10045 e3e84c5e708bfeb3b2d4c246bbf55d5b 142 PIRSF PIRSF006276 1 141 1.6E-40 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS10045 e3e84c5e708bfeb3b2d4c246bbf55d5b 142 Gene3D G3DSA:3.40.50.620 3 140 3.3E-22 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS10045 e3e84c5e708bfeb3b2d4c246bbf55d5b 142 Pfam PF00582 Universal stress protein family 3 138 6.1E-15 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 Pfam PF00107 Zinc-binding dehydrogenase 179 303 2.0E-30 T 25-04-2017 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 135 2.3E-10 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 Gene3D G3DSA:3.40.50.720 174 289 1.1E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 SUPERFAMILY SSF50129 3 174 5.17E-36 T 25-04-2017 IPR011032 GroES-like A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 SMART SM00829 14 340 2.6E-24 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 SUPERFAMILY SSF51735 145 321 1.47E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20795 fa80260608ea17307c12cf6d828c3c22 342 Gene3D G3DSA:3.90.180.10 3 173 4.1E-38 T 25-04-2017 IPR011032 GroES-like A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 Gene3D G3DSA:1.20.1250.20 29 204 3.2E-7 T 25-04-2017 A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 SUPERFAMILY SSF103473 481 503 2.09E-19 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 SUPERFAMILY SSF103473 26 217 2.09E-19 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 SUPERFAMILY SSF103473 266 444 2.09E-19 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 Gene3D G3DSA:1.20.1250.20 477 500 3.6E-5 T 25-04-2017 A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 Gene3D G3DSA:1.20.1250.20 276 439 3.6E-5 T 25-04-2017 A4U88_RS00310 7d1def0944f094e3d5eadd4eb8598d24 511 Pfam PF07690 Major Facilitator Superfamily 32 427 1.3E-12 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 Gene3D G3DSA:3.40.50.300 8 223 1.6E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 SMART SM00487 28 234 8.1E-53 T 25-04-2017 IPR014001 Helicase superfamily 1/2, ATP-binding domain A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.589 T 25-04-2017 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 Gene3D G3DSA:3.40.50.300 224 378 3.4E-47 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 SUPERFAMILY SSF52540 84 363 2.67E-68 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 Pfam PF00270 DEAD/DEAH box helicase 33 206 6.6E-45 T 25-04-2017 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 Pfam PF00271 Helicase conserved C-terminal domain 243 351 2.4E-28 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 SMART SM00490 270 351 1.2E-30 T 25-04-2017 IPR001650 Helicase, C-terminal A4U88_RS00530 cb53c6c2e0906c70f928858c23ea4b68 428 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 25-04-2017 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site A4U88_RS17455 ea95dec572fc62de4b4f203ed5b4b635 136 Pfam PF10697 Protein of unknown function (DUF2502) 28 114 2.7E-33 T 25-04-2017 IPR019638 Protein of unknown function DUF2502 A4U88_RS09120 8f1a92f04c5b76c1ac523b9885b3c03e 334 SMART SM00829 15 318 6.8E-6 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS09120 8f1a92f04c5b76c1ac523b9885b3c03e 334 Pfam PF13602 Zinc-binding dehydrogenase 186 316 1.9E-7 T 25-04-2017 A4U88_RS09120 8f1a92f04c5b76c1ac523b9885b3c03e 334 SUPERFAMILY SSF51735 115 285 4.86E-27 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09120 8f1a92f04c5b76c1ac523b9885b3c03e 334 SUPERFAMILY SSF50129 10 145 5.19E-24 T 25-04-2017 IPR011032 GroES-like A4U88_RS09120 8f1a92f04c5b76c1ac523b9885b3c03e 334 Gene3D G3DSA:3.40.50.720 124 286 3.2E-27 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09120 8f1a92f04c5b76c1ac523b9885b3c03e 334 Gene3D G3DSA:3.90.180.10 10 74 8.0E-7 T 25-04-2017 IPR011032 GroES-like A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 SUPERFAMILY SSF57783 60 100 1.87E-13 T 25-04-2017 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 Gene3D G3DSA:3.30.65.10 13 49 2.0E-16 T 25-04-2017 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 Gene3D G3DSA:3.30.65.10 61 96 4.2E-14 T 25-04-2017 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 Gene3D G3DSA:3.30.65.10 102 137 4.5E-5 T 25-04-2017 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 13 49 2.8E-16 T 25-04-2017 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 104 142 8.3E-15 T 25-04-2017 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 62 98 1.0E-15 T 25-04-2017 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 A4U88_RS22155 211e434d5dff41c4d6e7cef1e20c4d6b 181 SUPERFAMILY SSF57783 12 50 4.93E-14 T 25-04-2017 A4U88_RS00390 f6d249b52ae5a983930ca521213634d7 564 SUPERFAMILY SSF53649 250 545 4.3E-20 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS00390 f6d249b52ae5a983930ca521213634d7 564 Pfam PF00884 Sulfatase 250 538 3.4E-44 T 25-04-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 A4U88_RS00390 f6d249b52ae5a983930ca521213634d7 564 Pfam PF08019 Domain of unknown function (DUF1705) 56 173 5.6E-20 T 25-04-2017 IPR012549 Domain of unknown function DUF1705 GO:0016021 A4U88_RS00390 f6d249b52ae5a983930ca521213634d7 564 Gene3D G3DSA:3.40.720.10 250 543 1.1E-14 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS09425 82408a47f7db613814055bf8fb8e8f21 76 SUPERFAMILY SSF46575 2 75 3.79E-36 T 25-04-2017 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 A4U88_RS09425 82408a47f7db613814055bf8fb8e8f21 76 Gene3D G3DSA:1.10.1110.10 2 76 2.1E-42 T 25-04-2017 IPR011325 DNA polymerase III-theta, core, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS09425 82408a47f7db613814055bf8fb8e8f21 76 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 4 76 1.0E-28 T 25-04-2017 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 A4U88_RS09425 82408a47f7db613814055bf8fb8e8f21 76 Pfam PF06440 DNA polymerase III, theta subunit 3 71 1.1E-40 T 25-04-2017 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 SUPERFAMILY SSF55486 7 499 1.83E-117 T 25-04-2017 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PIRSF PIRSF006615 6 499 1.1E-191 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 16 498 3.3E-93 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 268 287 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 405 426 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 152 172 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 335 354 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 295 311 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 450 468 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS12560 e90dbc4032a8975da3d7c9388512f194 499 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 248 267 4.0E-41 T 25-04-2017 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 A4U88_RS03270 0c6f6317caa3ca7a41ed74829c8acb78 200 Pfam PF00694 Aconitase C-terminal domain 2 125 7.1E-40 T 25-04-2017 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 A4U88_RS03270 0c6f6317caa3ca7a41ed74829c8acb78 200 SUPERFAMILY SSF52016 3 194 6.28E-61 T 25-04-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel A4U88_RS03270 0c6f6317caa3ca7a41ed74829c8acb78 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 2 188 4.7E-98 T 25-04-2017 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 A4U88_RS03270 0c6f6317caa3ca7a41ed74829c8acb78 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 45.192 T 25-04-2017 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 A4U88_RS03270 0c6f6317caa3ca7a41ed74829c8acb78 200 Gene3D G3DSA:3.20.19.10 3 195 3.2E-48 T 25-04-2017 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 Gene3D G3DSA:3.40.50.1470 4 193 1.8E-70 T 25-04-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 35.632 T 25-04-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 4 191 2.2E-69 T 25-04-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 25-04-2017 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 3.0E-53 T 25-04-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 SUPERFAMILY SSF53178 4 193 9.55E-70 T 25-04-2017 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 A4U88_RS09680 01d15731ff98cc770d993a6a24a6a758 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 25-04-2017 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 A4U88_RS09805 c1825e751c62cad445d3c5e3c0e76036 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 253 4.8E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09805 c1825e751c62cad445d3c5e3c0e76036 260 SUPERFAMILY SSF161098 3 254 3.36E-57 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09805 c1825e751c62cad445d3c5e3c0e76036 260 Gene3D G3DSA:1.10.3720.10 5 257 1.3E-58 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS17465 6052609ab0f375e065a94c346aad4d4a 395 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 9 82 3.0E-18 T 25-04-2017 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 A4U88_RS17465 6052609ab0f375e065a94c346aad4d4a 395 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 3.5E-60 T 25-04-2017 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 A4U88_RS17465 6052609ab0f375e065a94c346aad4d4a 395 Pfam PF07670 Nucleoside recognition 92 190 1.2E-7 T 25-04-2017 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 A4U88_RS15500 d5046264ca3c54c7c8bd85c0f8aeb8f2 518 SUPERFAMILY SSF103088 355 476 1.29E-21 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS15500 d5046264ca3c54c7c8bd85c0f8aeb8f2 518 Pfam PF09850 Type VI secretion system protein DotU 113 302 4.5E-38 T 25-04-2017 IPR017732 Type IV / VI secretion system, DotU A4U88_RS15500 d5046264ca3c54c7c8bd85c0f8aeb8f2 518 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 112 312 9.8E-40 T 25-04-2017 IPR017732 Type IV / VI secretion system, DotU A4U88_RS15500 d5046264ca3c54c7c8bd85c0f8aeb8f2 518 Pfam PF00691 OmpA family 368 470 1.9E-11 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS15500 d5046264ca3c54c7c8bd85c0f8aeb8f2 518 Gene3D G3DSA:3.30.1330.60 347 475 3.4E-25 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS17245 0e2ef835a6ede520de4944b869610ff9 183 Gene3D G3DSA:3.40.30.10 10 178 4.7E-41 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17245 0e2ef835a6ede520de4944b869610ff9 183 Pfam PF08534 Redoxin 42 166 3.5E-24 T 25-04-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 A4U88_RS17245 0e2ef835a6ede520de4944b869610ff9 183 SUPERFAMILY SSF52833 46 178 2.87E-38 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17245 0e2ef835a6ede520de4944b869610ff9 183 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 178 1.6E-74 T 25-04-2017 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 A4U88_RS17245 0e2ef835a6ede520de4944b869610ff9 183 ProSitePatterns PS00194 Thioredoxin family active site. 72 90 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 63 78 1.8E-5 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 82 98 1.8E-5 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 112 132 1.8E-5 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 Pfam PF01047 MarR family 29 86 2.7E-10 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 4 133 2.9E-55 T 25-04-2017 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 Gene3D G3DSA:1.10.10.10 3 133 8.5E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 SUPERFAMILY SSF46785 4 135 8.98E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02670 88bf3318d6ac25beb5a201f2ccdd33e5 150 SMART SM00347 22 122 8.5E-22 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS02025 97eb57c168cf9c9a6268bea8ed2e715f 380 Pfam PF12698 ABC-2 family transporter protein 21 358 5.4E-29 T 25-04-2017 A4U88_RS14180 a4b5738d1a2b45a18e2a12c8cfa73218 289 SUPERFAMILY SSF161098 82 267 2.62E-25 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14180 a4b5738d1a2b45a18e2a12c8cfa73218 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 286 2.8E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14180 a4b5738d1a2b45a18e2a12c8cfa73218 289 Gene3D G3DSA:1.10.3720.10 81 286 6.6E-28 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14180 a4b5738d1a2b45a18e2a12c8cfa73218 289 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 29 64 5.2E-5 T 25-04-2017 IPR025966 Oligopeptide transport permease C-like, N-terminal domain A4U88_RS19330 0ad16d619555d75f3b521935df3d967e 182 Hamap MF_01104 Protein Syd [syd]. 3 181 36.15 T 25-04-2017 IPR009948 Syd GO:0009898 A4U88_RS19330 0ad16d619555d75f3b521935df3d967e 182 Pfam PF07348 Syd protein (SUKH-2) 7 179 1.5E-71 T 25-04-2017 IPR009948 Syd GO:0009898 A4U88_RS22955 7bdcbb8a44ac6a38ceff9254a0d49cd5 257 Pfam PF03649 Uncharacterised protein family (UPF0014) 10 245 3.3E-83 T 25-04-2017 IPR005226 UPF0014 family A4U88_RS22955 7bdcbb8a44ac6a38ceff9254a0d49cd5 257 TIGRFAM TIGR00245 TIGR00245: TIGR00245 family protein 6 251 6.1E-106 T 25-04-2017 IPR005226 UPF0014 family A4U88_RS10030 36cffacb575344eaa2cd393828d4b23b 357 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 50 262 1.1E-7 T 25-04-2017 IPR013658 SMP-30/Gluconolactonase/LRE-like region A4U88_RS10030 36cffacb575344eaa2cd393828d4b23b 357 Gene3D G3DSA:2.120.10.30 47 348 5.6E-24 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS10030 36cffacb575344eaa2cd393828d4b23b 357 SUPERFAMILY SSF63829 45 330 4.58E-25 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82693 564 670 5.75E-31 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82866 837 1029 1.31E-39 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82693 671 720 7.32E-21 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82693 811 859 7.32E-21 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Gene3D G3DSA:3.30.2090.10 181 275 3.7E-28 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82714 721 811 4.32E-18 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82866 296 497 3.4E-49 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Gene3D G3DSA:1.10.3850.10 279 498 5.9E-59 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Gene3D G3DSA:1.10.3850.10 817 1030 1.1E-49 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1039 0.0 T 25-04-2017 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82714 182 272 3.79E-22 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Gene3D G3DSA:3.30.70.1430 566 670 3.4E-37 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82693 135 182 1.2E-23 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82693 274 330 1.2E-23 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 551 568 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 620 634 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.3E-108 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Gene3D G3DSA:3.30.70.1430 38 139 1.1E-35 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 SUPERFAMILY SSF82693 38 131 1.78E-27 T 25-04-2017 A4U88_RS12070 c3b1968ddd41a00ca2c64f6571295380 1045 Gene3D G3DSA:3.30.2090.10 720 811 3.9E-23 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS24070 db1f1aac1a172026f567a98b667100a2 330 SUPERFAMILY SSF55681 5 323 4.97E-98 T 25-04-2017 A4U88_RS24070 db1f1aac1a172026f567a98b667100a2 330 PIRSF PIRSF001555 1 329 4.3E-151 T 25-04-2017 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 A4U88_RS24070 db1f1aac1a172026f567a98b667100a2 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 45.247 T 25-04-2017 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 A4U88_RS24070 db1f1aac1a172026f567a98b667100a2 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 4.0E-95 T 25-04-2017 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 A4U88_RS24070 db1f1aac1a172026f567a98b667100a2 330 Gene3D G3DSA:3.30.930.10 2 326 3.9E-152 T 25-04-2017 A4U88_RS24070 db1f1aac1a172026f567a98b667100a2 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 1.6E-181 T 25-04-2017 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 A4U88_RS21570 d7186d9bd8f327b62f75855508d14be7 313 SUPERFAMILY SSF53590 1 310 1.57E-106 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS21570 d7186d9bd8f327b62f75855508d14be7 313 Gene3D G3DSA:3.90.245.10 1 309 6.9E-114 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS21570 d7186d9bd8f327b62f75855508d14be7 313 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 300 8.4E-78 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS21570 d7186d9bd8f327b62f75855508d14be7 313 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 7 17 - T 25-04-2017 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 A4U88_RS21455 1b73aaf7050ec0fc13c1c0b6f3c68b08 372 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 2.1E-179 T 25-04-2017 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 A4U88_RS21455 1b73aaf7050ec0fc13c1c0b6f3c68b08 372 Pfam PF03841 L-seryl-tRNA selenium transferase 76 275 1.1E-14 T 25-04-2017 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 A4U88_RS21455 1b73aaf7050ec0fc13c1c0b6f3c68b08 372 SUPERFAMILY SSF53383 8 367 8.06E-33 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS21455 1b73aaf7050ec0fc13c1c0b6f3c68b08 372 Gene3D G3DSA:3.40.640.10 27 241 1.1E-27 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 Gene3D G3DSA:1.10.10.10 5 87 1.2E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 SUPERFAMILY SSF46785 4 113 1.78E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 Gene3D G3DSA:3.40.190.10 89 177 2.3E-4 T 25-04-2017 A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 SUPERFAMILY SSF53850 92 297 2.53E-46 T 25-04-2017 A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 Pfam PF03466 LysR substrate binding domain 90 295 7.7E-46 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 Gene3D G3DSA:3.40.190.10 178 261 1.7E-28 T 25-04-2017 A4U88_RS09410 0ca2b528a8b5adf43ee3c12c28302415 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.7E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS18175 87b634b9a7c59d20a1580a0ddcc32952 182 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 181 2.0E-107 T 25-04-2017 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 A4U88_RS18175 87b634b9a7c59d20a1580a0ddcc32952 182 PIRSF PIRSF038321 2 182 1.1E-87 T 25-04-2017 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 A4U88_RS18175 87b634b9a7c59d20a1580a0ddcc32952 182 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 5 170 4.6E-76 T 25-04-2017 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 A4U88_RS14470 af23261be899807974ba8aca18765721 103 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 92 3.3E-20 T 25-04-2017 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 A4U88_RS14470 af23261be899807974ba8aca18765721 103 SUPERFAMILY SSF101498 3 90 2.09E-12 T 25-04-2017 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 A4U88_RS14470 af23261be899807974ba8aca18765721 103 Pfam PF04316 Anti-sigma-28 factor, FlgM 37 90 4.1E-11 T 25-04-2017 IPR031316 Anti-sigma-28 factor FlgM, C-terminal A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 Gene3D G3DSA:3.40.190.10 94 174 5.6E-6 T 25-04-2017 A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 Gene3D G3DSA:3.40.190.10 280 292 5.6E-6 T 25-04-2017 A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.2E-15 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 Gene3D G3DSA:1.10.10.10 3 86 2.5E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 Gene3D G3DSA:3.40.190.10 175 256 3.0E-11 T 25-04-2017 A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 SUPERFAMILY SSF53850 90 295 6.33E-27 T 25-04-2017 A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 Pfam PF03466 LysR substrate binding domain 90 292 1.3E-23 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS06970 c7ddaf4ca383811b3f55ba5f60bdda15 303 SUPERFAMILY SSF46785 3 89 1.42E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02895 ec2f8918493691e01ac5ca2359af5d38 243 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 238 2.0E-118 T 25-04-2017 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 A4U88_RS02895 ec2f8918493691e01ac5ca2359af5d38 243 SUPERFAMILY SSF53167 3 238 3.53E-90 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS02895 ec2f8918493691e01ac5ca2359af5d38 243 Pfam PF01048 Phosphorylase superfamily 15 218 1.1E-36 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS02895 ec2f8918493691e01ac5ca2359af5d38 243 Gene3D G3DSA:3.40.50.1580 10 237 9.1E-82 T 25-04-2017 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 A4U88_RS02895 ec2f8918493691e01ac5ca2359af5d38 243 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 25-04-2017 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 A4U88_RS02895 ec2f8918493691e01ac5ca2359af5d38 243 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 239 50.469 T 25-04-2017 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 47 746 1.0E-138 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 147 1.8E-18 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 Gene3D G3DSA:2.40.170.20 150 746 3.5E-77 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 SUPERFAMILY SSF56935 472 744 1.54E-97 T 25-04-2017 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 SUPERFAMILY SSF56935 32 441 1.54E-97 T 25-04-2017 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 Gene3D G3DSA:2.170.130.10 25 149 2.2E-28 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 729 746 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS03995 989de1b23953344dac7a5f2d8cb801a9 746 Pfam PF00593 TonB dependent receptor 492 742 4.5E-18 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS06720 0fe109b8283095a54f8026261db67427 432 Pfam PF00939 Sodium:sulfate symporter transmembrane region 12 431 2.4E-26 T 25-04-2017 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 A4U88_RS09380 ec40049c18d661c01c934ece14862ea2 192 Gene3D G3DSA:1.10.3480.10 1 180 1.2E-49 T 25-04-2017 IPR020945 DMSO/Nitrate reductase chaperone A4U88_RS09380 ec40049c18d661c01c934ece14862ea2 192 Pfam PF02613 Nitrate reductase delta subunit 44 147 4.4E-12 T 25-04-2017 IPR020945 DMSO/Nitrate reductase chaperone A4U88_RS09380 ec40049c18d661c01c934ece14862ea2 192 SUPERFAMILY SSF89155 2 181 3.14E-46 T 25-04-2017 IPR020945 DMSO/Nitrate reductase chaperone A4U88_RS09380 ec40049c18d661c01c934ece14862ea2 192 PIRSF PIRSF004690 1 186 2.6E-65 T 25-04-2017 IPR026269 Tat proofreading chaperone DmsD-type A4U88_RS18865 2e5c008d134941b8aa8e8992a6fad7c9 111 Pfam PF04899 MbeD/MobD like 3 61 5.2E-9 T 25-04-2017 IPR006983 MbeD/MobD-like A4U88_RS10920 18be1c005e40f748c055b332c244bf41 130 SUPERFAMILY SSF54427 1 128 4.81E-36 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS10920 18be1c005e40f748c055b332c244bf41 130 Gene3D G3DSA:3.10.450.50 2 128 3.2E-35 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS10920 18be1c005e40f748c055b332c244bf41 130 Pfam PF12680 SnoaL-like domain 8 114 8.1E-14 T 25-04-2017 IPR009959 Polyketide cyclase SnoaL-like domain A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 Gene3D G3DSA:1.10.10.10 40 105 4.0E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 Pfam PF00392 Bacterial regulatory proteins, gntR family 42 104 2.4E-15 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 78 94 1.5E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 64 78 1.5E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 SUPERFAMILY SSF53383 99 496 1.84E-87 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 Pfam PF00155 Aminotransferase class I and II 160 449 6.1E-25 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 SUPERFAMILY SSF46785 40 105 1.21E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 Gene3D G3DSA:3.40.640.10 171 389 7.9E-59 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS17130 ad2106d9bad5e6636f22f4a5538b4c8e 499 SMART SM00345 45 104 5.3E-15 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS14270 1a54d2f23040b54e2aa1685fe95bdc6d 220 Gene3D G3DSA:1.10.3720.10 10 216 1.7E-57 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14270 1a54d2f23040b54e2aa1685fe95bdc6d 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 4.9E-27 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14270 1a54d2f23040b54e2aa1685fe95bdc6d 220 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 5.4E-34 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS14270 1a54d2f23040b54e2aa1685fe95bdc6d 220 SUPERFAMILY SSF161098 13 206 1.07E-51 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06330 b358a68f266f9091ec83f5db75e9f746 368 Pfam PF12698 ABC-2 family transporter protein 25 359 1.0E-48 T 25-04-2017 A4U88_RS06330 b358a68f266f9091ec83f5db75e9f746 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 6.6E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS06330 b358a68f266f9091ec83f5db75e9f746 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 6.6E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS06330 b358a68f266f9091ec83f5db75e9f746 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 6.6E-8 T 25-04-2017 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 SUPERFAMILY SSF50249 560 642 5.57E-20 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 641 1.3E-223 T 25-04-2017 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 SMART SM00357 23 79 1.8E-11 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 44.887 T 25-04-2017 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 Pfam PF00773 RNB domain 189 516 8.5E-84 T 25-04-2017 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 Pfam PF00575 S1 RNA binding domain 559 639 1.3E-9 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 Pfam PF08206 Ribonuclease B OB domain 24 80 7.3E-18 T 25-04-2017 IPR013223 Ribonuclease B, N-terminal OB domain A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 SUPERFAMILY SSF50249 8 80 6.0E-15 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 SUPERFAMILY SSF50249 83 171 4.28E-30 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 SMART SM00955 189 517 3.0E-119 T 25-04-2017 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 SUPERFAMILY SSF50249 188 556 3.48E-111 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 25-04-2017 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 A4U88_RS12805 8dc0a63263b3bc5c40f5cdc82605b7f9 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 25-04-2017 IPR022966 Ribonuclease II/R, conserved site A4U88_RS12535 211eb92ae93d7f7cc039e67a49ab3267 131 Gene3D G3DSA:2.30.110.10 1 120 1.6E-29 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS12535 211eb92ae93d7f7cc039e67a49ab3267 131 SUPERFAMILY SSF50475 4 120 2.5E-13 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS12535 211eb92ae93d7f7cc039e67a49ab3267 131 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 5 85 1.1E-10 T 25-04-2017 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS22070 4cbf914266cf1940dd5330af9900e3fc 179 Pfam PF01202 Shikimate kinase 15 166 2.2E-9 T 25-04-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS22070 4cbf914266cf1940dd5330af9900e3fc 179 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 9 169 1.4E-63 T 25-04-2017 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 A4U88_RS22070 4cbf914266cf1940dd5330af9900e3fc 179 Gene3D G3DSA:3.40.50.300 3 170 2.3E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22070 4cbf914266cf1940dd5330af9900e3fc 179 SUPERFAMILY SSF52540 1 170 7.79E-25 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 229 7.5E-33 T 25-04-2017 A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 Gene3D G3DSA:3.40.50.720 4 229 1.0E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 159 2.1E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 68 79 2.1E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 216 2.1E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.1E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 176 2.1E-15 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS07015 959f1acfc1ea29b0ade291c7fb922b39 232 SUPERFAMILY SSF51735 4 229 1.65E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 SMART SM00228 211 280 1.0E-9 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 SMART SM00228 115 186 0.5 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 Pfam PF13180 PDZ domain 213 286 2.2E-9 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 SUPERFAMILY SSF50156 195 292 6.18E-19 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 SUPERFAMILY SSF50156 86 192 2.23E-11 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 Pfam PF02163 Peptidase family M50 10 439 3.2E-87 T 25-04-2017 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 3 451 1.1E-158 T 25-04-2017 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 Gene3D G3DSA:2.30.42.10 95 192 2.9E-11 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS19240 662c344c2f44cbb51c37be05acd70543 451 Gene3D G3DSA:2.30.42.10 214 289 1.8E-19 T 25-04-2017 IPR001478 PDZ domain GO:0005515 A4U88_RS09220 ac45652baa6541433229cc2d0ef1cbbb 265 Pfam PF01063 Amino-transferase class IV 24 245 4.7E-42 T 25-04-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 A4U88_RS09220 ac45652baa6541433229cc2d0ef1cbbb 265 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 25-04-2017 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 A4U88_RS09220 ac45652baa6541433229cc2d0ef1cbbb 265 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 263 1.2E-110 T 25-04-2017 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 A4U88_RS09220 ac45652baa6541433229cc2d0ef1cbbb 265 Gene3D G3DSA:3.30.470.10 1 104 5.0E-33 T 25-04-2017 A4U88_RS09220 ac45652baa6541433229cc2d0ef1cbbb 265 SUPERFAMILY SSF56752 1 254 8.11E-66 T 25-04-2017 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 A4U88_RS09220 ac45652baa6541433229cc2d0ef1cbbb 265 Gene3D G3DSA:3.20.10.10 123 260 4.5E-36 T 25-04-2017 A4U88_RS11525 793ca623d4c2f2fad59eec746b054ce3 338 Pfam PF13515 Fusaric acid resistance protein-like 202 322 2.1E-11 T 25-04-2017 A4U88_RS07560 0b566301f94d404fdf7797aba998a7e6 390 Pfam PF04235 Protein of unknown function (DUF418) 220 379 2.4E-46 T 25-04-2017 IPR007349 Domain of unknown function DUF418 A4U88_RS07630 2cf178b156a8f3bbf6d4b93f660cdf02 209 SMART SM00014 17 144 0.0013 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS07630 2cf178b156a8f3bbf6d4b93f660cdf02 209 Gene3D G3DSA:1.20.144.10 74 148 2.4E-4 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS07630 2cf178b156a8f3bbf6d4b93f660cdf02 209 Pfam PF01569 PAP2 superfamily 68 150 7.8E-11 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS07630 2cf178b156a8f3bbf6d4b93f660cdf02 209 SUPERFAMILY SSF48317 4 146 9.03E-13 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 2 17 1.8E-44 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 23 41 1.8E-44 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 52 75 1.8E-44 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 PRINTS PR00340 P-II protein signature 83 103 1.8E-44 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 PIRSF PIRSF039144 1 112 3.2E-58 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 SMART SM00938 4 105 4.3E-68 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 25-04-2017 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.2E-44 T 25-04-2017 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 Gene3D G3DSA:3.30.70.120 1 112 1.5E-51 T 25-04-2017 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 25-04-2017 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 A4U88_RS18545 b49e9d05d7c34cf70c96b0a06bce74df 112 SUPERFAMILY SSF54913 1 112 7.63E-47 T 25-04-2017 IPR011322 Nitrogen regulatory PII-like, alpha/beta A4U88_RS08745 d53a79ea31e60f3931b905594c2cc5e0 307 Pfam PF00892 EamA-like transporter family 159 289 2.6E-14 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS08745 d53a79ea31e60f3931b905594c2cc5e0 307 Pfam PF00892 EamA-like transporter family 21 147 1.1E-12 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS08745 d53a79ea31e60f3931b905594c2cc5e0 307 SUPERFAMILY SSF103481 52 151 7.98E-12 T 25-04-2017 A4U88_RS08745 d53a79ea31e60f3931b905594c2cc5e0 307 SUPERFAMILY SSF103481 199 292 1.57E-11 T 25-04-2017 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 4 320 3.5E-111 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 SUPERFAMILY SSF101801 249 322 4.84E-12 T 25-04-2017 IPR001543 Surface presentation of antigen (SpoA) A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 Pfam PF02154 Flagellar motor switch protein FliM 37 230 4.6E-74 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 9.0E-31 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 9.0E-31 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 212 230 9.0E-31 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 PRINTS PR00955 Flagellar motor switch protein FliM signature 3 16 9.0E-31 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 Gene3D G3DSA:2.30.330.10 241 322 3.2E-5 T 25-04-2017 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 PIRSF PIRSF002888 2 330 2.2E-94 T 25-04-2017 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 SUPERFAMILY SSF103039 48 230 1.23E-19 T 25-04-2017 IPR028976 CheC-like domain A4U88_RS14375 2b18200b3a80290f1d8a4cab3b4370b4 334 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 252 320 4.2E-15 T 25-04-2017 IPR001543 Surface presentation of antigen (SpoA) A4U88_RS15740 1bcb313b02cc5e1aa3c3e56adc70c1ee 234 SUPERFAMILY SSF161098 21 219 2.09E-31 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS15740 1bcb313b02cc5e1aa3c3e56adc70c1ee 234 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 227 3.2E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS15740 1bcb313b02cc5e1aa3c3e56adc70c1ee 234 Gene3D G3DSA:1.10.3720.10 21 228 2.3E-26 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 296 4.3E-9 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 137 1.6E-22 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 PIRSF PIRSF005303 1 322 1.3E-88 T 25-04-2017 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 Gene3D G3DSA:3.30.1330.10 3 140 1.3E-46 T 25-04-2017 IPR016188 PurM-like, N-terminal domain A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 2.8E-114 T 25-04-2017 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 319 32.443 T 25-04-2017 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 SUPERFAMILY SSF56042 143 308 4.78E-40 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 SUPERFAMILY SSF55326 4 138 1.31E-34 T 25-04-2017 A4U88_RS04835 00a6172fa17573d997ff7004ba8b87cd 330 Gene3D G3DSA:3.90.650.10 145 322 1.7E-52 T 25-04-2017 IPR010918 AIR synthase-related protein, C-terminal domain A4U88_RS09865 d7efb40a322173d0cf7be05165389e00 339 SUPERFAMILY SSF101478 7 329 6.28E-69 T 25-04-2017 IPR005502 ADP-ribosylation/Crystallin J1 A4U88_RS09865 d7efb40a322173d0cf7be05165389e00 339 Pfam PF03747 ADP-ribosylglycohydrolase 12 305 8.0E-61 T 25-04-2017 IPR005502 ADP-ribosylation/Crystallin J1 A4U88_RS23630 7ba0d54220e62e8af50977a8221212ab 159 Pfam PF07813 LTXXQ motif family protein 43 138 1.4E-20 T 25-04-2017 IPR012899 LTXXQ motif family protein GO:0042597 A4U88_RS23630 7ba0d54220e62e8af50977a8221212ab 159 PIRSF PIRSF034445 1 148 3.4E-29 T 25-04-2017 IPR012899 LTXXQ motif family protein GO:0042597 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 Gene3D G3DSA:3.30.540.10 2 194 1.1E-77 T 25-04-2017 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 270 282 - T 25-04-2017 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 Gene3D G3DSA:3.40.190.80 197 329 1.3E-57 T 25-04-2017 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 330 42.269 T 25-04-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 SUPERFAMILY SSF56655 2 327 5.64E-111 T 25-04-2017 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PIRSF PIRSF500210 1 333 3.7E-126 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 194 6.1E-79 T 25-04-2017 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 2.9E-72 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 2.9E-72 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 2.9E-72 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 304 329 2.9E-72 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 2.9E-72 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 2.9E-72 T 25-04-2017 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS01830 3d45660ba400beb6af6496a809fe5d9d 334 PIRSF PIRSF000904 1 333 4.4E-123 T 25-04-2017 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 SUPERFAMILY SSF52343 257 403 4.06E-38 T 25-04-2017 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 1.2E-18 T 25-04-2017 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 2.3E-232 T 25-04-2017 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 PIRSF PIRSF000044 1 407 1.7E-221 T 25-04-2017 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 SUPERFAMILY SSF54292 40 124 8.0E-22 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Gene3D G3DSA:3.40.50.80 276 392 5.8E-43 T 25-04-2017 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 38 114 1.1E-10 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Pfam PF00970 Oxidoreductase FAD-binding domain 200 266 4.1E-10 T 25-04-2017 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 SUPERFAMILY SSF63380 105 272 1.43E-37 T 25-04-2017 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Gene3D G3DSA:3.10.20.30 40 123 7.9E-22 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 63.568 T 25-04-2017 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 A4U88_RS04145 1d8d5b0f915fa59d7f93c817b5f7de2c 407 Gene3D G3DSA:2.40.30.10 124 264 3.9E-62 T 25-04-2017 A4U88_RS07910 4fc6b7263149b07ca2fbf4276febd1e9 381 Gene3D G3DSA:3.90.1150.10 247 380 4.5E-57 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS07910 4fc6b7263149b07ca2fbf4276febd1e9 381 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 188 202 - T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS07910 4fc6b7263149b07ca2fbf4276febd1e9 381 PIRSF PIRSF001434 1 381 1.3E-147 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS07910 4fc6b7263149b07ca2fbf4276febd1e9 381 Gene3D G3DSA:3.40.640.10 3 245 4.0E-89 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS07910 4fc6b7263149b07ca2fbf4276febd1e9 381 SUPERFAMILY SSF53383 15 380 2.81E-114 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS07910 4fc6b7263149b07ca2fbf4276febd1e9 381 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 379 9.1E-157 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS02950 47bcd2ea2decee6b752501e06d8d7dc0 415 Pfam PF17152 Periplasmic sensor domain 47 147 1.4E-34 T 25-04-2017 IPR033417 Periplasmic sensor domain CHASE8 A4U88_RS02950 47bcd2ea2decee6b752501e06d8d7dc0 415 SUPERFAMILY SSF55073 256 410 8.63E-45 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS02950 47bcd2ea2decee6b752501e06d8d7dc0 415 Gene3D G3DSA:3.30.70.270 252 411 1.2E-51 T 25-04-2017 A4U88_RS02950 47bcd2ea2decee6b752501e06d8d7dc0 415 SMART SM00267 240 414 2.8E-62 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS02950 47bcd2ea2decee6b752501e06d8d7dc0 415 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 247 406 1.9E-43 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS02950 47bcd2ea2decee6b752501e06d8d7dc0 415 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 404 4.1E-46 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS07680 422142064cf90b9a5c639fa8621f10b7 724 SUPERFAMILY SSF52540 528 708 1.3E-34 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07680 422142064cf90b9a5c639fa8621f10b7 724 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 510 714 5.5E-52 T 25-04-2017 IPR005702 Exopolysaccharide synthesis protein GO:0045226 A4U88_RS07680 422142064cf90b9a5c639fa8621f10b7 724 Pfam PF13614 AAA domain 540 654 7.9E-15 T 25-04-2017 IPR025669 AAA domain A4U88_RS07680 422142064cf90b9a5c639fa8621f10b7 724 Pfam PF13807 G-rich domain on putative tyrosine kinase 367 447 1.5E-34 T 25-04-2017 IPR032807 Tyrosine kinase, G-rich domain A4U88_RS07680 422142064cf90b9a5c639fa8621f10b7 724 Gene3D G3DSA:3.40.50.300 524 709 3.8E-33 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07680 422142064cf90b9a5c639fa8621f10b7 724 Pfam PF02706 Chain length determinant protein 16 252 2.5E-46 T 25-04-2017 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 A4U88_RS08295 29529dd9e2caad8b4391f311a66d8f75 286 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 83 92 - T 25-04-2017 IPR024002 Formate/nitrite transporter, conserved site A4U88_RS08295 29529dd9e2caad8b4391f311a66d8f75 286 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 168 178 - T 25-04-2017 IPR024002 Formate/nitrite transporter, conserved site A4U88_RS08295 29529dd9e2caad8b4391f311a66d8f75 286 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 26 280 2.0E-95 T 25-04-2017 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 A4U88_RS08295 29529dd9e2caad8b4391f311a66d8f75 286 Gene3D G3DSA:1.20.1080.10 29 280 4.5E-89 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS08295 29529dd9e2caad8b4391f311a66d8f75 286 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 15 279 2.0E-128 T 25-04-2017 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 A4U88_RS08295 29529dd9e2caad8b4391f311a66d8f75 286 Pfam PF01226 Formate/nitrite transporter 16 276 1.7E-75 T 25-04-2017 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 A4U88_RS18790 28209109e91c0e8c454e793be7669ebe 227 Gene3D G3DSA:2.60.40.360 28 139 8.6E-12 T 25-04-2017 IPR008962 PapD-like A4U88_RS18790 28209109e91c0e8c454e793be7669ebe 227 SUPERFAMILY SSF49354 23 138 2.88E-16 T 25-04-2017 IPR008962 PapD-like A4U88_RS18790 28209109e91c0e8c454e793be7669ebe 227 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 28 139 6.8E-15 T 25-04-2017 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 A4U88_RS01680 2eb79b9576f6272ec6b1238ed370737d 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 3.4E-22 T 25-04-2017 IPR019201 Protein of unknown function DUF2065 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 5.6E-54 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 5.6E-54 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 5.6E-54 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 15 40 5.6E-54 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 5.6E-54 T 25-04-2017 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 SMART SM00304 216 268 2.7E-7 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 SMART SM00283 269 516 3.4E-87 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 Pfam PF02203 Tar ligand binding domain homologue 1 174 2.2E-21 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 Gene3D G3DSA:1.10.287.950 285 488 9.0E-59 T 25-04-2017 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 SUPERFAMILY SSF58104 236 517 1.44E-69 T 25-04-2017 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 515 3.5E-61 T 25-04-2017 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 SUPERFAMILY SSF47170 28 177 8.63E-12 T 25-04-2017 IPR003122 Chemotaxis methyl-accepting receptor, ligand-binding GO:0004888|GO:0006935|GO:0007165|GO:0016020 A4U88_RS01825 f9e5c78d16f907d431bff9078b849d37 517 Pfam PF00672 HAMP domain 196 264 9.1E-12 T 25-04-2017 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 A4U88_RS01185 f02fe0585544e336377c4ffcb859fe7f 154 SUPERFAMILY SSF56524 29 153 1.07E-11 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS01185 f02fe0585544e336377c4ffcb859fe7f 154 Gene3D G3DSA:3.90.420.10 34 117 3.2E-4 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS24050 809fbcc649c27b5813d42efde9f7ad41 139 Gene3D G3DSA:3.40.1650.10 1 139 6.3E-42 T 25-04-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 A4U88_RS24050 809fbcc649c27b5813d42efde9f7ad41 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.308 T 25-04-2017 IPR023064 D-ribose pyranase GO:0016872 A4U88_RS24050 809fbcc649c27b5813d42efde9f7ad41 139 SUPERFAMILY SSF102546 1 139 3.01E-42 T 25-04-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 A4U88_RS24050 809fbcc649c27b5813d42efde9f7ad41 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 3.6E-47 T 25-04-2017 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 A4U88_RS02095 684794076d0a1fe6598bd304571f94b5 189 SUPERFAMILY SSF52540 1 179 7.68E-34 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02095 684794076d0a1fe6598bd304571f94b5 189 Gene3D G3DSA:3.40.50.300 3 24 9.6E-15 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02095 684794076d0a1fe6598bd304571f94b5 189 Gene3D G3DSA:3.40.50.300 72 176 9.6E-15 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02095 684794076d0a1fe6598bd304571f94b5 189 SMART SM00072 1 181 1.9E-7 T 25-04-2017 IPR008145 Guanylate kinase/L-type calcium channel beta subunit A4U88_RS02095 684794076d0a1fe6598bd304571f94b5 189 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 3 177 4.1E-64 T 25-04-2017 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 A4U88_RS02095 684794076d0a1fe6598bd304571f94b5 189 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 1 178 34.004 T 25-04-2017 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 SUPERFAMILY SSF47928 3 104 9.02E-28 T 25-04-2017 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.779 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 Gene3D G3DSA:1.10.520.20 3 103 2.8E-34 T 25-04-2017 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 173 1.1E-50 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 25-04-2017 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 9.2E-29 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 9.2E-29 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 9.2E-29 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 9.2E-29 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 9.2E-29 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS24115 69ac0c537cfa721e4af148765c63518f 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 3.7E-64 T 25-04-2017 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 A4U88_RS15165 9e4700b686731095635b98187d1c1f4f 972 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 200 543 3.8E-89 T 25-04-2017 IPR010090 Phage tail tape measure protein A4U88_RS15165 9e4700b686731095635b98187d1c1f4f 972 Pfam PF10145 Phage-related minor tail protein 248 435 6.9E-46 T 25-04-2017 IPR010090 Phage tail tape measure protein A4U88_RS16110 dfc3a10d139f5ea21a56fd7da7babaf9 188 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 26 181 2.5E-62 T 25-04-2017 IPR006513 Conserved hypothetical protein CHP01626, YtfJ A4U88_RS16110 dfc3a10d139f5ea21a56fd7da7babaf9 188 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 182 5.1E-71 T 25-04-2017 IPR006513 Conserved hypothetical protein CHP01626, YtfJ A4U88_RS02055 ba1bbbcaedde5bb8ee3f4d5614dcbbe8 172 SUPERFAMILY SSF54427 34 148 5.26E-18 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS02055 ba1bbbcaedde5bb8ee3f4d5614dcbbe8 172 Gene3D G3DSA:3.10.450.50 18 149 3.9E-18 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS02055 ba1bbbcaedde5bb8ee3f4d5614dcbbe8 172 Pfam PF12680 SnoaL-like domain 35 135 5.6E-7 T 25-04-2017 IPR009959 Polyketide cyclase SnoaL-like domain A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 Hamap MF_02022 Cell division protein DedD [dedD]. 10 245 27.136 T 25-04-2017 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 PRINTS PR01217 Proline rich extensin signature 147 164 5.5E-10 T 25-04-2017 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 PRINTS PR01217 Proline rich extensin signature 130 146 5.5E-10 T 25-04-2017 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 PRINTS PR01217 Proline rich extensin signature 96 117 5.5E-10 T 25-04-2017 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 PRINTS PR01217 Proline rich extensin signature 55 67 5.5E-10 T 25-04-2017 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 Gene3D G3DSA:3.30.70.1070 163 240 3.6E-15 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 SUPERFAMILY SSF110997 167 240 5.1E-13 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS17010 fed77c202551359964ed3afa2445f11b 245 Pfam PF05036 Sporulation related domain 167 240 1.5E-11 T 25-04-2017 IPR007730 Sporulation-related domain GO:0042834 A4U88_RS14630 13a4e08ac8b6ffe1e4388bcccdb88fcb 130 Pfam PF13665 Domain of unknown function (DUF4150) 10 115 4.2E-40 T 25-04-2017 IPR025425 Domain of unknown function DUF4150 A4U88_RS00175 2e487aaa218d54e17c81801e96ffc39b 259 Gene3D G3DSA:3.40.50.150 27 258 1.4E-37 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS00175 2e487aaa218d54e17c81801e96ffc39b 259 Pfam PF08241 Methyltransferase domain 52 139 2.4E-21 T 25-04-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 A4U88_RS00175 2e487aaa218d54e17c81801e96ffc39b 259 SUPERFAMILY SSF53335 12 242 8.6E-42 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS18715 5d10c7f548300e90fa52d27b42a5485d 292 Gene3D G3DSA:2.60.200.30 149 261 7.8E-43 T 25-04-2017 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 A4U88_RS18715 5d10c7f548300e90fa52d27b42a5485d 292 Gene3D G3DSA:3.40.50.10330 1 148 4.3E-38 T 25-04-2017 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 A4U88_RS18715 5d10c7f548300e90fa52d27b42a5485d 292 SUPERFAMILY SSF111331 8 289 9.94E-93 T 25-04-2017 IPR016064 NAD kinase/diacylglycerol kinase-like domain A4U88_RS18715 5d10c7f548300e90fa52d27b42a5485d 292 Pfam PF01513 ATP-NAD kinase 8 271 1.7E-74 T 25-04-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 A4U88_RS18715 5d10c7f548300e90fa52d27b42a5485d 292 Hamap MF_00361 NAD kinase [nadK]. 6 287 33.361 T 25-04-2017 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 17 33 - T 25-04-2017 IPR013061 Tryptophan/tryrosine permease, conserved site A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 7 383 5.5E-137 T 25-04-2017 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 148 168 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 316 334 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 82 102 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 10 33 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 337 356 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 182 204 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 282 301 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 37 56 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 PRINTS PR00166 Aromatic amino acid permease signature 221 240 1.2E-87 T 25-04-2017 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 A4U88_RS16720 23aac61f8647638971484c2d6f3ffb79 402 Pfam PF03222 Tryptophan/tyrosine permease family 3 389 4.0E-134 T 25-04-2017 IPR018227 Tryptophan/tyrosine permease GO:0003333 A4U88_RS20775 f8679734603227bcd7fca3fb1c27834d 326 Pfam PF01618 MotA/TolQ/ExbB proton channel family 178 286 1.5E-34 T 25-04-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 A4U88_RS20775 f8679734603227bcd7fca3fb1c27834d 326 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 93 304 3.4E-96 T 25-04-2017 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 A4U88_RS04105 7aa21cbacb3eba3e00e3b6cbd212af14 193 Gene3D G3DSA:3.40.50.10490 1 190 3.1E-63 T 25-04-2017 A4U88_RS04105 7aa21cbacb3eba3e00e3b6cbd212af14 193 SUPERFAMILY SSF53697 1 189 3.03E-51 T 25-04-2017 A4U88_RS04105 7aa21cbacb3eba3e00e3b6cbd212af14 193 Pfam PF13580 SIS domain 14 146 8.0E-31 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS04105 7aa21cbacb3eba3e00e3b6cbd212af14 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 4.3E-83 T 25-04-2017 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 A4U88_RS04105 7aa21cbacb3eba3e00e3b6cbd212af14 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.154 T 25-04-2017 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 A4U88_RS07150 3925017088c9397a29b43fcdc9bc3656 211 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 25-04-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07150 3925017088c9397a29b43fcdc9bc3656 211 SUPERFAMILY SSF53056 1 203 3.01E-65 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07150 3925017088c9397a29b43fcdc9bc3656 211 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 25-04-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07150 3925017088c9397a29b43fcdc9bc3656 211 Pfam PF00484 Carbonic anhydrase 34 189 1.2E-47 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07150 3925017088c9397a29b43fcdc9bc3656 211 Gene3D G3DSA:3.40.1050.10 1 204 9.2E-70 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07150 3925017088c9397a29b43fcdc9bc3656 211 SMART SM00947 27 193 9.8E-64 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 Gene3D G3DSA:2.40.170.20 255 783 6.2E-120 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 Pfam PF07715 TonB-dependent Receptor Plug Domain 140 253 3.3E-19 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 SUPERFAMILY SSF56935 124 783 1.34E-120 T 25-04-2017 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 SMART SM00965 64 115 8.6E-13 T 25-04-2017 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 766 783 - T 25-04-2017 IPR010917 TonB-dependent receptor, conserved site A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 Pfam PF00593 TonB dependent receptor 534 781 1.5E-26 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 Pfam PF07660 Secretin and TonB N terminus short domain 67 113 4.6E-10 T 25-04-2017 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 141 783 6.1E-137 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS11230 32caaca135742a9c041c9b614b5bf9b6 783 Gene3D G3DSA:2.170.130.10 139 254 9.1E-31 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS07925 3a9c5fc27cc98ac23957bf000bdfeb02 165 SUPERFAMILY SSF49401 40 164 2.04E-20 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS07925 3a9c5fc27cc98ac23957bf000bdfeb02 165 Pfam PF00419 Fimbrial protein 31 164 5.6E-21 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07925 3a9c5fc27cc98ac23957bf000bdfeb02 165 Gene3D G3DSA:2.60.40.1090 30 164 3.7E-9 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS18835 b296f98c4518ce241ea64f9e607226c3 171 Pfam PF07566 Domain of Unknown Function (DUF1543) 16 67 9.2E-19 T 25-04-2017 IPR011440 Domain of unknown function DUF1543 A4U88_RS18835 b296f98c4518ce241ea64f9e607226c3 171 Pfam PF07566 Domain of Unknown Function (DUF1543) 91 146 9.4E-15 T 25-04-2017 IPR011440 Domain of unknown function DUF1543 A4U88_RS18835 b296f98c4518ce241ea64f9e607226c3 171 Gene3D G3DSA:3.50.100.10 65 155 1.3E-31 T 25-04-2017 A4U88_RS18835 b296f98c4518ce241ea64f9e607226c3 171 Gene3D G3DSA:3.10.20.10 2 64 4.8E-24 T 25-04-2017 A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 1.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 1.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 1.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 Gene3D G3DSA:1.10.10.10 139 196 1.3E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 192 2.3E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 SMART SM00421 138 195 5.0E-15 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS07980 6853174169c7430a5e33689fc843feba 221 SUPERFAMILY SSF46894 137 196 9.18E-16 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS23145 ebaee8b3274def4d510439cbb87f0837 328 SUPERFAMILY SSF53822 28 326 3.3E-64 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS23145 ebaee8b3274def4d510439cbb87f0837 328 Pfam PF13407 Periplasmic binding protein domain 31 288 4.2E-53 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS23145 ebaee8b3274def4d510439cbb87f0837 328 Gene3D G3DSA:3.40.50.2300 28 148 1.1E-30 T 25-04-2017 A4U88_RS23145 ebaee8b3274def4d510439cbb87f0837 328 Gene3D G3DSA:3.40.50.2300 149 281 4.1E-26 T 25-04-2017 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 Gene3D G3DSA:3.40.190.10 94 182 9.3E-11 T 25-04-2017 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 1.1E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 Gene3D G3DSA:3.40.190.10 183 251 2.0E-6 T 25-04-2017 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 Gene3D G3DSA:1.10.10.10 4 80 5.8E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 SUPERFAMILY SSF53850 90 284 9.78E-27 T 25-04-2017 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 Pfam PF03466 LysR substrate binding domain 89 283 2.8E-20 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 SUPERFAMILY SSF46785 6 83 5.8E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 6.0E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 6.0E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS17440 d57f14d4d0ee467293954251b92626bb 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 6.0E-6 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19325 959ae3dc552e15cc40fa7c32ccf6e01b 412 ProSitePatterns PS00217 Sugar transport proteins signature 2. 112 137 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS19325 959ae3dc552e15cc40fa7c32ccf6e01b 412 Gene3D G3DSA:1.20.1250.20 15 198 1.1E-34 T 25-04-2017 A4U88_RS19325 959ae3dc552e15cc40fa7c32ccf6e01b 412 Gene3D G3DSA:1.20.1250.20 223 401 2.0E-25 T 25-04-2017 A4U88_RS19325 959ae3dc552e15cc40fa7c32ccf6e01b 412 Pfam PF07690 Major Facilitator Superfamily 23 306 2.8E-44 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19325 959ae3dc552e15cc40fa7c32ccf6e01b 412 SUPERFAMILY SSF103473 12 403 6.93E-81 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 235 3.1E-22 T 25-04-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 Gene3D G3DSA:3.40.190.10 110 216 4.4E-22 T 25-04-2017 A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 Gene3D G3DSA:3.40.190.10 66 104 3.3E-5 T 25-04-2017 A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 Gene3D G3DSA:3.40.190.10 217 248 3.3E-5 T 25-04-2017 A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 SUPERFAMILY SSF53850 37 309 2.25E-46 T 25-04-2017 A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 SMART SM00062 27 242 1.7E-24 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS22470 32de6a8c7c0a5e37b84be1bc617323aa 331 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 28 323 4.1E-136 T 25-04-2017 IPR010068 Periplasmic binding protein TauA GO:0015734|GO:0042597 A4U88_RS00555 6d380f77de6bb0478aa5c596f3bfb9f2 376 SUPERFAMILY SSF53756 2 372 7.33E-143 T 25-04-2017 A4U88_RS00555 6d380f77de6bb0478aa5c596f3bfb9f2 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 22 370 3.0E-128 T 25-04-2017 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS00555 6d380f77de6bb0478aa5c596f3bfb9f2 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 372 7.0E-173 T 25-04-2017 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 A4U88_RS00555 6d380f77de6bb0478aa5c596f3bfb9f2 376 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 16 374 71.458 T 25-04-2017 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 A4U88_RS00555 6d380f77de6bb0478aa5c596f3bfb9f2 376 Gene3D G3DSA:3.40.50.2000 211 371 8.0E-68 T 25-04-2017 A4U88_RS00555 6d380f77de6bb0478aa5c596f3bfb9f2 376 Gene3D G3DSA:3.40.50.2000 2 210 7.3E-90 T 25-04-2017 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 SUPERFAMILY SSF53850 93 289 1.07E-34 T 25-04-2017 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 Pfam PF03466 LysR substrate binding domain 91 286 5.4E-36 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.1E-17 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 Gene3D G3DSA:3.40.190.10 94 176 1.9E-27 T 25-04-2017 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 SUPERFAMILY SSF46785 2 86 3.15E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 Gene3D G3DSA:1.10.10.10 2 86 8.5E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 Gene3D G3DSA:3.40.190.10 177 254 7.3E-13 T 25-04-2017 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS11070 4cf40d677e419f41715f1b4b3bd282c2 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.9E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21140 2c9f8135db5c6d4237fea434b670d77d 322 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 8 313 5.4E-121 T 25-04-2017 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 A4U88_RS21140 2c9f8135db5c6d4237fea434b670d77d 322 Pfam PF03741 Integral membrane protein TerC family 81 283 5.6E-56 T 25-04-2017 IPR005496 Integral membrane protein TerC GO:0016021 A4U88_RS18890 a727c9fc246ae0f787f988e6628fc1aa 460 Gene3D G3DSA:1.20.1250.20 257 447 1.9E-17 T 25-04-2017 A4U88_RS18890 a727c9fc246ae0f787f988e6628fc1aa 460 Gene3D G3DSA:1.20.1250.20 3 191 8.7E-26 T 25-04-2017 A4U88_RS18890 a727c9fc246ae0f787f988e6628fc1aa 460 ProSitePatterns PS00217 Sugar transport proteins signature 2. 103 128 - T 25-04-2017 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 A4U88_RS18890 a727c9fc246ae0f787f988e6628fc1aa 460 Pfam PF07690 Major Facilitator Superfamily 12 402 4.0E-48 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18890 a727c9fc246ae0f787f988e6628fc1aa 460 SUPERFAMILY SSF103473 3 188 6.93E-59 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS18890 a727c9fc246ae0f787f988e6628fc1aa 460 SUPERFAMILY SSF103473 241 449 6.93E-59 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS05830 bb819dfd743a7653f4f9ddc970874149 257 SUPERFAMILY SSF53474 6 256 1.74E-53 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS05830 bb819dfd743a7653f4f9ddc970874149 257 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 114 2.1E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS05830 bb819dfd743a7653f4f9ddc970874149 257 PRINTS PR00111 Alpha/beta hydrolase fold signature 87 100 2.1E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS05830 bb819dfd743a7653f4f9ddc970874149 257 PRINTS PR00111 Alpha/beta hydrolase fold signature 44 59 2.1E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS05830 bb819dfd743a7653f4f9ddc970874149 257 Gene3D G3DSA:3.40.50.1820 6 256 1.1E-54 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS05830 bb819dfd743a7653f4f9ddc970874149 257 Pfam PF12697 Alpha/beta hydrolase family 21 248 4.9E-23 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 3.0E-25 T 25-04-2017 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 SUPERFAMILY SSF46785 3 77 1.27E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 1.0E-24 T 25-04-2017 IPR001669 Arginine repressor GO:0003700|GO:0006355 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 1.0E-24 T 25-04-2017 IPR001669 Arginine repressor GO:0003700|GO:0006355 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 1.0E-24 T 25-04-2017 IPR001669 Arginine repressor GO:0003700|GO:0006355 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 1.0E-24 T 25-04-2017 IPR001669 Arginine repressor GO:0003700|GO:0006355 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 9.9E-25 T 25-04-2017 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 Gene3D G3DSA:1.10.10.10 2 77 1.5E-34 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 SUPERFAMILY SSF55252 82 150 3.14E-21 T 25-04-2017 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 6.6E-24 T 25-04-2017 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 Gene3D G3DSA:3.30.1360.40 80 154 5.6E-28 T 25-04-2017 IPR024946 Arginine repressor C-terminal-like domain A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 61.063 T 25-04-2017 IPR001669 Arginine repressor GO:0003700|GO:0006355 A4U88_RS01850 d65956edcd0dc08fdba153f110fce17e 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 149 1.9E-47 T 25-04-2017 IPR001669 Arginine repressor GO:0003700|GO:0006355 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 SUPERFAMILY SSF53067 138 311 2.99E-47 T 25-04-2017 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 SUPERFAMILY SSF53067 14 134 2.69E-36 T 25-04-2017 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 SUPERFAMILY SSF109604 314 507 6.91E-55 T 25-04-2017 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 Pfam PF02541 Ppx/GppA phosphatase family 27 309 6.8E-98 T 25-04-2017 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 Gene3D G3DSA:3.30.420.150 133 312 5.4E-53 T 25-04-2017 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 PIRSF PIRSF001267 4 507 2.1E-202 T 25-04-2017 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 13 307 2.2E-98 T 25-04-2017 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 A4U88_RS18035 fd90938e9cdf623f354918f86f519643 516 Gene3D G3DSA:3.30.420.40 6 132 2.6E-43 T 25-04-2017 A4U88_RS00700 1d2b35044b8aa4f343d64cc2be7d9fa4 316 SUPERFAMILY SSF143865 1 255 1.44E-37 T 25-04-2017 A4U88_RS00700 1d2b35044b8aa4f343d64cc2be7d9fa4 316 SUPERFAMILY SSF144083 251 314 1.83E-20 T 25-04-2017 A4U88_RS00700 1d2b35044b8aa4f343d64cc2be7d9fa4 316 Pfam PF01544 CorA-like Mg2+ transporter protein 26 312 1.2E-54 T 25-04-2017 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 A4U88_RS00700 1d2b35044b8aa4f343d64cc2be7d9fa4 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 5 316 7.3E-108 T 25-04-2017 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 A4U88_RS00700 1d2b35044b8aa4f343d64cc2be7d9fa4 316 Gene3D G3DSA:1.20.58.340 240 316 2.6E-28 T 25-04-2017 A4U88_RS05105 6b76e6d7b96eb40b3718739ee6b1fc56 285 Pfam PF00950 ABC 3 transport family 14 273 1.7E-51 T 25-04-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 A4U88_RS05105 6b76e6d7b96eb40b3718739ee6b1fc56 285 SUPERFAMILY SSF81345 9 270 2.62E-19 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 Gene3D G3DSA:3.10.290.10 3 63 4.3E-16 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 SUPERFAMILY SSF55174 5 98 3.39E-13 T 25-04-2017 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 107 121 - T 25-04-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 Pfam PF00849 RNA pseudouridylate synthase 69 199 3.1E-17 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 233 1.5E-62 T 25-04-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 SMART SM00363 3 74 1.6E-11 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 SUPERFAMILY SSF55120 69 232 4.32E-44 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS12985 30fa0ac2593760de03443c7570c256a1 298 Pfam PF01479 S4 domain 4 43 1.8E-12 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS09850 380da6f690ca4e0fc5670f9bd094e4b1 373 SMART SM00558 92 215 6.7E-10 T 25-04-2017 IPR003347 JmjC domain A4U88_RS09850 380da6f690ca4e0fc5670f9bd094e4b1 373 Gene3D G3DSA:2.60.120.650 6 205 7.1E-45 T 25-04-2017 A4U88_RS09850 380da6f690ca4e0fc5670f9bd094e4b1 373 SUPERFAMILY SSF51197 7 290 4.81E-75 T 25-04-2017 A4U88_RS09850 380da6f690ca4e0fc5670f9bd094e4b1 373 Pfam PF08007 Cupin superfamily protein 9 309 5.4E-102 T 25-04-2017 IPR003347 JmjC domain A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 209 2.0E-21 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 SUPERFAMILY SSF46894 144 212 4.76E-20 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 SMART SM00421 153 210 1.1E-23 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 Pfam PF00072 Response regulator receiver domain 9 120 2.9E-31 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 SMART SM00448 7 120 3.7E-34 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 Gene3D G3DSA:1.10.10.10 155 212 3.5E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 2.3E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 2.3E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 2.3E-13 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 Gene3D G3DSA:3.40.50.2300 7 154 6.4E-37 T 25-04-2017 A4U88_RS14145 df2f22ea2f0c5cbbd93d7580c6268266 216 SUPERFAMILY SSF52172 8 136 4.41E-34 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 33 106 4.4E-29 T 25-04-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 8 203 37.455 T 25-04-2017 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 56 105 2.0E-23 T 25-04-2017 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 116 201 6.9E-16 T 25-04-2017 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 18.403 T 25-04-2017 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 115 197 4.8E-30 T 25-04-2017 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 SUPERFAMILY SSF101386 114 203 8.04E-24 T 25-04-2017 A4U88_RS07815 b2e11a864e96a68441fb0f82e3ab311b 206 SUPERFAMILY SSF141734 6 122 1.16E-44 T 25-04-2017 A4U88_RS22950 fe472a340f7c2c352de675acbffb49eb 278 Gene3D G3DSA:3.20.20.150 3 277 2.8E-76 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS22950 fe472a340f7c2c352de675acbffb49eb 278 SUPERFAMILY SSF51658 6 277 1.66E-57 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS22950 fe472a340f7c2c352de675acbffb49eb 278 Pfam PF01261 Xylose isomerase-like TIM barrel 24 213 2.2E-12 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 SUPERFAMILY SSF56176 423 505 3.0E-17 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 Pfam PF03471 Transporter associated domain 429 505 3.4E-17 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 Gene3D G3DSA:3.30.465.10 422 506 3.5E-21 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 SMART SM01091 426 507 4.4E-22 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 Pfam PF03741 Integral membrane protein TerC family 14 203 4.0E-48 T 25-04-2017 IPR005496 Integral membrane protein TerC GO:0016021 A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 Gene3D G3DSA:3.10.580.10 282 421 9.0E-17 T 25-04-2017 A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 Pfam PF00571 CBS domain 363 414 2.1E-6 T 25-04-2017 IPR000644 CBS domain A4U88_RS13785 0d39441e80abe01400bd47670fe65185 514 SUPERFAMILY SSF54631 285 422 3.16E-25 T 25-04-2017 A4U88_RS17870 0e379452a68beaf36cba21515925b1c1 229 Gene3D G3DSA:3.40.50.1820 7 207 2.5E-35 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS17870 0e379452a68beaf36cba21515925b1c1 229 Pfam PF02230 Phospholipase/Carboxylesterase 4 206 1.3E-38 T 25-04-2017 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 A4U88_RS17870 0e379452a68beaf36cba21515925b1c1 229 SUPERFAMILY SSF53474 5 205 1.4E-30 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS05920 02f328165b467204ac1dd108dc03efa4 246 SUPERFAMILY SSF88713 1 242 4.22E-93 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS05920 02f328165b467204ac1dd108dc03efa4 246 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 43.495 T 25-04-2017 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF A4U88_RS05920 02f328165b467204ac1dd108dc03efa4 246 Pfam PF03746 LamB/YcsF family 3 234 1.4E-93 T 25-04-2017 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF A4U88_RS01840 3bb8648713ab0d603c19391306ca5fc2 87 SUPERFAMILY SSF159871 3 87 1.7E-27 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS01840 3bb8648713ab0d603c19391306ca5fc2 87 Gene3D G3DSA:3.30.1660.10 18 87 7.2E-29 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS01840 3bb8648713ab0d603c19391306ca5fc2 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 9.3E-23 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS05230 a01258e954031d5316a1204294b6d8f3 406 Pfam PF07690 Major Facilitator Superfamily 30 354 6.0E-37 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS05230 a01258e954031d5316a1204294b6d8f3 406 Gene3D G3DSA:1.20.1250.20 228 399 2.1E-19 T 25-04-2017 A4U88_RS05230 a01258e954031d5316a1204294b6d8f3 406 Gene3D G3DSA:1.20.1250.20 25 207 1.1E-22 T 25-04-2017 A4U88_RS05230 a01258e954031d5316a1204294b6d8f3 406 SUPERFAMILY SSF103473 16 403 2.09E-57 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13990 325f0edafd5273848cf42523f46b854d 466 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 2.8E-166 T 25-04-2017 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 A4U88_RS13990 325f0edafd5273848cf42523f46b854d 466 PIRSF PIRSF006446 2 459 2.9E-227 T 25-04-2017 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 1.7E-128 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 7.7E-53 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 7.7E-53 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 7.7E-53 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 7.7E-53 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 7.7E-53 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 7.7E-53 T 25-04-2017 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 SUPERFAMILY SSF53067 3 123 9.71E-32 T 25-04-2017 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 Gene3D G3DSA:3.30.420.40 1 159 1.5E-50 T 25-04-2017 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 SUPERFAMILY SSF53067 101 309 1.37E-44 T 25-04-2017 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 25-04-2017 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 8.4E-137 T 25-04-2017 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 Pfam PF00814 Glycoprotease family 24 307 1.2E-104 T 25-04-2017 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS21010 07701beaea0c981117d20b3758723ca2 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.314 T 25-04-2017 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 Gene3D G3DSA:1.20.1250.20 254 415 2.5E-17 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 Gene3D G3DSA:1.20.1250.20 457 477 2.5E-17 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 Pfam PF07690 Major Facilitator Superfamily 14 404 3.5E-49 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 Gene3D G3DSA:1.20.1250.20 5 186 4.3E-29 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 PRINTS PR01036 Tetracycline resistance protein TetB signature 134 158 2.8E-9 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 PRINTS PR01036 Tetracycline resistance protein TetB signature 12 36 2.8E-9 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 PRINTS PR01036 Tetracycline resistance protein TetB signature 72 94 2.8E-9 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 PRINTS PR01036 Tetracycline resistance protein TetB signature 298 322 2.8E-9 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 PRINTS PR01036 Tetracycline resistance protein TetB signature 395 414 2.8E-9 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 PRINTS PR01036 Tetracycline resistance protein TetB signature 159 183 2.8E-9 T 25-04-2017 A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 SUPERFAMILY SSF103473 4 194 1.7E-63 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 SUPERFAMILY SSF103473 462 485 1.7E-63 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13140 400ccc3e94b597e20cc1665663b19f5f 490 SUPERFAMILY SSF103473 244 414 1.7E-63 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS21450 738ed3c7e3b4ee85557e83bf84408368 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 243 8.1E-120 T 25-04-2017 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS21450 738ed3c7e3b4ee85557e83bf84408368 246 SUPERFAMILY SSF51569 53 221 1.32E-5 T 25-04-2017 A4U88_RS21450 738ed3c7e3b4ee85557e83bf84408368 246 Pfam PF07071 Protein of unknown function (DUF1341) 8 224 2.8E-112 T 25-04-2017 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 A4U88_RS02800 f328c432ea4ea577369f94edede5e7a6 94 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 22 92 2.0E-12 T 25-04-2017 IPR009885 Protein of unknown function DUF1435 A4U88_RS02800 f328c432ea4ea577369f94edede5e7a6 94 Pfam PF07256 Protein of unknown function (DUF1435) 17 91 6.8E-34 T 25-04-2017 IPR009885 Protein of unknown function DUF1435 A4U88_RS21350 3bfd5833bd2812bc95b4625b91230f09 100 SUPERFAMILY SSF52091 1 96 7.65E-16 T 25-04-2017 IPR002645 STAS domain A4U88_RS21350 3bfd5833bd2812bc95b4625b91230f09 100 Pfam PF13466 STAS domain 16 91 1.8E-17 T 25-04-2017 IPR002645 STAS domain A4U88_RS21350 3bfd5833bd2812bc95b4625b91230f09 100 Gene3D G3DSA:3.30.750.24 11 96 5.3E-13 T 25-04-2017 IPR002645 STAS domain A4U88_RS09275 fefc8ad82f646407c18efcc6eebaf15e 301 Gene3D G3DSA:3.40.190.10 137 241 5.3E-22 T 25-04-2017 A4U88_RS09275 fefc8ad82f646407c18efcc6eebaf15e 301 Gene3D G3DSA:3.40.190.10 57 136 1.7E-22 T 25-04-2017 A4U88_RS09275 fefc8ad82f646407c18efcc6eebaf15e 301 Gene3D G3DSA:3.40.190.10 246 284 1.7E-22 T 25-04-2017 A4U88_RS09275 fefc8ad82f646407c18efcc6eebaf15e 301 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 61 283 1.4E-35 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS09275 fefc8ad82f646407c18efcc6eebaf15e 301 SMART SM00062 57 286 5.6E-19 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS09275 fefc8ad82f646407c18efcc6eebaf15e 301 SUPERFAMILY SSF53850 47 285 1.52E-40 T 25-04-2017 A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 Pfam PF13360 PQQ-like domain 79 320 3.3E-53 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 156 187 6.4E-5 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 330 362 2.1 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 290 321 300.0 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 252 283 4.3E-4 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 116 147 2.0E-4 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 201 232 54.0 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SMART SM00564 65 96 2.0 T 25-04-2017 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.434 T 25-04-2017 IPR017687 Outer membrane protein assembly factor BamB A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 SUPERFAMILY SSF50998 24 384 3.36E-80 T 25-04-2017 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 392 1.9E-134 T 25-04-2017 IPR017687 Outer membrane protein assembly factor BamB A4U88_RS18370 98516647f421690c9a386fcd6fe751fd 393 Gene3D G3DSA:2.140.10.10 2 392 2.4E-80 T 25-04-2017 IPR027295 Quinoprotein alcohol dehydrogenase-like domain A4U88_RS23795 80ecde893e12c05cd23b1f4ef2521de7 78 Pfam PF00830 Ribosomal L28 family 3 62 3.7E-26 T 25-04-2017 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS23795 80ecde893e12c05cd23b1f4ef2521de7 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 3.7E-28 T 25-04-2017 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23795 80ecde893e12c05cd23b1f4ef2521de7 78 Gene3D G3DSA:2.30.170.40 2 77 1.4E-35 T 25-04-2017 A4U88_RS23795 80ecde893e12c05cd23b1f4ef2521de7 78 SUPERFAMILY SSF143800 2 77 1.31E-29 T 25-04-2017 A4U88_RS23795 80ecde893e12c05cd23b1f4ef2521de7 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.265 T 25-04-2017 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS07530 767b006639883c564198bb58063cc352 102 Pfam PF01845 CcdB protein 2 101 6.2E-33 T 25-04-2017 IPR002712 Toxin CcdB GO:0006276|GO:0008657 A4U88_RS07530 767b006639883c564198bb58063cc352 102 SUPERFAMILY SSF50118 1 102 9.81E-32 T 25-04-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor A4U88_RS07530 767b006639883c564198bb58063cc352 102 Gene3D G3DSA:2.30.30.110 1 102 1.4E-35 T 25-04-2017 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor A4U88_RS07530 767b006639883c564198bb58063cc352 102 ProDom PD012578 PLASMID TOXIN CCDB CYTOTOXIC LETB POST-SEGREGATION SYSTEM CCDB-LIKE GYRASE FUSED-CCDB 13 101 9.0E-26 T 25-04-2017 IPR002712 Toxin CcdB GO:0006276|GO:0008657 A4U88_RS13455 782b4d704f81da48492c7d240c46924d 253 SUPERFAMILY SSF51197 61 230 1.73E-17 T 25-04-2017 A4U88_RS13455 782b4d704f81da48492c7d240c46924d 253 Gene3D G3DSA:2.60.120.330 116 214 9.8E-13 T 25-04-2017 IPR027443 Isopenicillin N synthase-like A4U88_RS13455 782b4d704f81da48492c7d240c46924d 253 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 58 214 1.9E-50 T 25-04-2017 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 363 372 - T 25-04-2017 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 SMART SM00382 173 356 6.7E-8 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 161 372 2.6E-70 T 25-04-2017 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 451 3.6E-197 T 25-04-2017 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 SUPERFAMILY SSF52540 108 378 1.69E-91 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 Gene3D G3DSA:3.40.50.300 139 420 1.5E-89 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14355 50a6029a61153b7d2288f24417ea3834 453 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 7 452 6.6E-191 T 25-04-2017 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 A4U88_RS21150 81412f29f52d0713d9bbc219df785181 495 Pfam PF08666 SAF domain 11 80 5.0E-13 T 25-04-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 A4U88_RS21150 81412f29f52d0713d9bbc219df785181 495 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 108 494 6.4E-152 T 25-04-2017 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 A4U88_RS21150 81412f29f52d0713d9bbc219df785181 495 SMART SM00858 11 82 9.6E-15 T 25-04-2017 IPR013974 SAF domain Reactome: R-HSA-4085001 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 5.1E-22 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 25-04-2017 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS21015 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 25-04-2017 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS16100 746615e8a6b38f046a80911266434a6d 445 Pfam PF13440 Polysaccharide biosynthesis protein 43 346 1.6E-8 T 25-04-2017 A4U88_RS14755 27946fb77adbf2dc75a38ab265bc0bb6 463 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 29 52 - T 25-04-2017 IPR017441 Protein kinase, ATP binding site GO:0005524 A4U88_RS14755 27946fb77adbf2dc75a38ab265bc0bb6 463 Pfam PF00069 Protein kinase domain 23 286 4.2E-26 T 25-04-2017 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 A4U88_RS14755 27946fb77adbf2dc75a38ab265bc0bb6 463 Gene3D G3DSA:3.30.200.20 20 129 1.0E-17 T 25-04-2017 A4U88_RS14755 27946fb77adbf2dc75a38ab265bc0bb6 463 Gene3D G3DSA:1.10.510.10 130 314 6.7E-27 T 25-04-2017 A4U88_RS14755 27946fb77adbf2dc75a38ab265bc0bb6 463 Gene3D G3DSA:1.10.510.10 356 382 6.7E-27 T 25-04-2017 A4U88_RS14755 27946fb77adbf2dc75a38ab265bc0bb6 463 SUPERFAMILY SSF56112 19 298 2.37E-47 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 Gene3D G3DSA:1.10.10.10 4 103 2.8E-33 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 1.2E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 1.2E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 1.2E-13 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 SMART SM00418 5 83 1.8E-21 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 SUPERFAMILY SSF46785 5 95 7.72E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09555 de914c3b7cde0a47b419e88d2c1612a0 104 Pfam PF12840 Helix-turn-helix domain 5 63 4.0E-16 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21670 ad9d60a03bca7381381d1b18e06678a1 317 PIRSF PIRSF000102 1 316 8.4E-36 T 25-04-2017 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 A4U88_RS21670 ad9d60a03bca7381381d1b18e06678a1 317 Gene3D G3DSA:3.90.110.10 162 314 4.5E-17 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS21670 ad9d60a03bca7381381d1b18e06678a1 317 SUPERFAMILY SSF56327 162 314 1.61E-17 T 25-04-2017 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 A4U88_RS21670 ad9d60a03bca7381381d1b18e06678a1 317 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 154 4.9E-7 T 25-04-2017 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 A4U88_RS21670 ad9d60a03bca7381381d1b18e06678a1 317 Gene3D G3DSA:3.40.50.720 1 158 1.1E-15 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21670 ad9d60a03bca7381381d1b18e06678a1 317 SUPERFAMILY SSF51735 1 155 9.1E-14 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 Gene3D G3DSA:3.40.190.10 88 179 7.4E-13 T 25-04-2017 A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 Gene3D G3DSA:1.10.10.10 1 84 1.3E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.5E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.5E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.5E-9 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 Pfam PF03466 LysR substrate binding domain 87 290 1.2E-23 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 Gene3D G3DSA:3.40.190.10 180 258 6.7E-12 T 25-04-2017 A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 4.4E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 SUPERFAMILY SSF46785 1 83 1.12E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09660 5a73d5c9e4028696a2e5f47c15981f5d 293 SUPERFAMILY SSF53850 88 291 1.63E-23 T 25-04-2017 A4U88_RS12445 44fa2430bfca2b6831dab425189b7843 417 Gene3D G3DSA:3.40.190.10 33 154 3.9E-23 T 25-04-2017 A4U88_RS12445 44fa2430bfca2b6831dab425189b7843 417 SUPERFAMILY SSF53850 29 415 5.44E-66 T 25-04-2017 A4U88_RS12445 44fa2430bfca2b6831dab425189b7843 417 Gene3D G3DSA:3.40.190.10 155 348 3.3E-34 T 25-04-2017 A4U88_RS12445 44fa2430bfca2b6831dab425189b7843 417 Pfam PF01547 Bacterial extracellular solute-binding protein 48 334 4.2E-34 T 25-04-2017 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 SUPERFAMILY SSF53756 9 814 0.0 T 25-04-2017 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 PIRSF PIRSF000460 2 815 8.4E-233 T 25-04-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 Gene3D G3DSA:3.40.50.2000 480 795 9.0E-141 T 25-04-2017 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 Gene3D G3DSA:3.40.50.2000 11 479 4.6E-205 T 25-04-2017 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 25-04-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 25-04-2017 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS22830 b77b0c5102be3edb99cd46974815ad82 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 25-04-2017 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 A4U88_RS19825 cdc81ea11e6800d43b9ebbd18eb2cc83 436 Gene3D G3DSA:1.20.1250.20 226 415 1.3E-25 T 25-04-2017 A4U88_RS19825 cdc81ea11e6800d43b9ebbd18eb2cc83 436 Gene3D G3DSA:1.20.1250.20 12 203 2.1E-46 T 25-04-2017 A4U88_RS19825 cdc81ea11e6800d43b9ebbd18eb2cc83 436 Pfam PF07690 Major Facilitator Superfamily 18 379 4.0E-57 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19825 cdc81ea11e6800d43b9ebbd18eb2cc83 436 SUPERFAMILY SSF103473 5 415 7.72E-90 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13135 870cbb8b995e78b919ce6202cc039be1 187 Gene3D G3DSA:1.10.357.10 8 178 8.1E-27 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS13135 870cbb8b995e78b919ce6202cc039be1 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 58 1.1E-9 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS13135 870cbb8b995e78b919ce6202cc039be1 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 1.1E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS13135 870cbb8b995e78b919ce6202cc039be1 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 1.1E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS13135 870cbb8b995e78b919ce6202cc039be1 187 SUPERFAMILY SSF46689 2 80 2.82E-16 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS09530 b93c0e9fccba1061af86996bb36491f1 306 Pfam PF13407 Periplasmic binding protein domain 24 282 1.4E-54 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS09530 b93c0e9fccba1061af86996bb36491f1 306 Gene3D G3DSA:3.40.50.2300 22 136 1.0E-27 T 25-04-2017 A4U88_RS09530 b93c0e9fccba1061af86996bb36491f1 306 Gene3D G3DSA:3.40.50.2300 137 302 9.6E-49 T 25-04-2017 A4U88_RS09530 b93c0e9fccba1061af86996bb36491f1 306 SUPERFAMILY SSF53822 23 302 1.44E-77 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS22985 d26a3477da953e1eaf6b8c86b857f1a9 183 Gene3D G3DSA:2.60.40.1090 28 182 2.8E-36 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS22985 d26a3477da953e1eaf6b8c86b857f1a9 183 SUPERFAMILY SSF49401 29 182 2.54E-35 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS22985 d26a3477da953e1eaf6b8c86b857f1a9 183 Pfam PF00419 Fimbrial protein 32 182 1.2E-10 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 Pfam PF00574 Clp protease 16 195 1.6E-77 T 25-04-2017 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 SUPERFAMILY SSF52096 14 195 5.78E-70 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 Gene3D G3DSA:3.90.226.10 7 194 1.5E-80 T 25-04-2017 IPR029045 ClpP/crotonase-like domain A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 PRINTS PR00127 Clp protease catalytic subunit P signature 23 38 1.2E-45 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 PRINTS PR00127 Clp protease catalytic subunit P signature 115 134 1.2E-45 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 PRINTS PR00127 Clp protease catalytic subunit P signature 63 83 1.2E-45 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 PRINTS PR00127 Clp protease catalytic subunit P signature 172 191 1.2E-45 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 PRINTS PR00127 Clp protease catalytic subunit P signature 94 111 1.2E-45 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS09565 d40bc03cb339c7bf98cb34c9e54fc4ba 197 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 7 197 40.128 T 25-04-2017 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 A4U88_RS15735 9a372fa620b4cbb3546983baaa939d2f 291 Gene3D G3DSA:3.40.190.10 57 175 1.9E-28 T 25-04-2017 A4U88_RS15735 9a372fa620b4cbb3546983baaa939d2f 291 Pfam PF03180 NLPA lipoprotein 58 276 3.2E-41 T 25-04-2017 IPR004872 Lipoprotein NlpA family A4U88_RS15735 9a372fa620b4cbb3546983baaa939d2f 291 SUPERFAMILY SSF53850 64 277 4.89E-36 T 25-04-2017 A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 Gene3D G3DSA:3.40.50.920 190 317 4.9E-43 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 SUPERFAMILY SSF52518 9 174 1.39E-33 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 Pfam PF02780 Transketolase, C-terminal domain 189 309 9.1E-35 T 25-04-2017 IPR033248 Transketolase, C-terminal domain A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 SUPERFAMILY SSF52922 185 317 1.57E-37 T 25-04-2017 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 Pfam PF02779 Transketolase, pyrimidine binding domain 12 164 1.5E-20 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 SMART SM00861 13 179 2.1E-22 T 25-04-2017 IPR005475 Transketolase-like, pyrimidine-binding domain A4U88_RS16920 282ad1fedf74084c1701b04df60e713f 319 Gene3D G3DSA:3.40.50.970 9 189 1.9E-34 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 SMART SM00226 3 141 1.4E-55 T 25-04-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 5 139 1.2E-39 T 25-04-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 Gene3D G3DSA:3.40.50.270 3 142 1.1E-42 T 25-04-2017 A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 SUPERFAMILY SSF52788 2 139 1.57E-41 T 25-04-2017 IPR023485 Phosphotyrosine protein phosphatase I superfamily A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 5 22 1.5E-26 T 25-04-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 41 57 1.5E-26 T 25-04-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 75 90 1.5E-26 T 25-04-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 97 110 1.5E-26 T 25-04-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 A4U88_RS07675 04ae65ce8c62dc648b7442cd304f08d0 144 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 1.5E-26 T 25-04-2017 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 234 1.3E-44 T 25-04-2017 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 Gene3D G3DSA:3.40.50.620 172 220 3.4E-41 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 Gene3D G3DSA:3.40.50.620 6 71 3.4E-41 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 Gene3D G3DSA:3.90.800.10 72 170 7.0E-18 T 25-04-2017 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 2.1E-14 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 2.1E-14 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 2.1E-14 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 2.1E-14 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 2.1E-14 T 25-04-2017 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 290 41.623 T 25-04-2017 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 SUPERFAMILY SSF52374 6 285 8.0E-89 T 25-04-2017 A4U88_RS20375 557c177c2d1182f108c90f509333c1e6 303 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 264 3.7E-111 T 25-04-2017 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 A4U88_RS21695 e828309d0a0511b9f26edc848d0c6a65 481 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 25-04-2017 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 A4U88_RS21695 e828309d0a0511b9f26edc848d0c6a65 481 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 472 6.2E-234 T 25-04-2017 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0031402|GO:0071436 A4U88_RS21695 e828309d0a0511b9f26edc848d0c6a65 481 Pfam PF00474 Sodium:solute symporter family 36 432 6.9E-132 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS21695 e828309d0a0511b9f26edc848d0c6a65 481 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 8.7E-109 T 25-04-2017 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS19485 62a217e07d3c74f98d3db37bc8a8be41 72 SUPERFAMILY SSF50182 21 71 1.64E-18 T 25-04-2017 IPR010920 LSM domain A4U88_RS19485 62a217e07d3c74f98d3db37bc8a8be41 72 Gene3D G3DSA:2.30.30.100 19 72 5.4E-29 T 25-04-2017 A4U88_RS19485 62a217e07d3c74f98d3db37bc8a8be41 72 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 2.8E-24 T 25-04-2017 IPR010305 Protein of unknown function DUF903 A4U88_RS11990 beb6a82baefb0811afc79de5717e40b3 74 SMART SM00923 7 57 2.0E-27 T 25-04-2017 IPR005153 MbtH-like protein A4U88_RS11990 beb6a82baefb0811afc79de5717e40b3 74 SUPERFAMILY SSF160582 6 69 9.15E-28 T 25-04-2017 A4U88_RS11990 beb6a82baefb0811afc79de5717e40b3 74 Gene3D G3DSA:3.90.820.10 15 70 5.5E-28 T 25-04-2017 A4U88_RS11990 beb6a82baefb0811afc79de5717e40b3 74 Pfam PF03621 MbtH-like protein 6 56 1.1E-25 T 25-04-2017 IPR005153 MbtH-like protein A4U88_RS15400 d94ff60554eb5b7c471da96ac6e02544 132 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 18 120 1.4E-31 T 25-04-2017 IPR019114 Chaperone lipoprotein, PulS/OutS-like A4U88_RS08760 2339118ea4fb43b32add9eb3b102bcdd 167 Pfam PF09335 SNARE associated Golgi protein 40 160 7.0E-15 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 76 5.0E-20 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 SUPERFAMILY SSF46785 11 83 6.92E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 Gene3D G3DSA:1.10.10.10 12 83 7.9E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.2E-8 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.2E-8 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 Gene3D G3DSA:3.40.1410.10 84 242 1.2E-42 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 SUPERFAMILY SSF64288 64 241 6.44E-37 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 Pfam PF07702 UTRA domain 97 236 7.8E-28 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 7 242 6.7E-85 T 25-04-2017 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 SMART SM00345 18 76 3.3E-21 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS02135 7842d244e85e4b0576a2f6f9a359c2c5 242 SMART SM00866 97 237 1.4E-26 T 25-04-2017 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 A4U88_RS09495 32393688cd2592320276a342430a5eaf 111 Gene3D G3DSA:1.20.1000.10 10 91 9.7E-4 T 25-04-2017 A4U88_RS09370 4b66c229daccd1d6c6d49082d7d8d6b0 313 Gene3D G3DSA:3.40.50.720 98 279 1.1E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09370 4b66c229daccd1d6c6d49082d7d8d6b0 313 Hamap MF_01666 Glyoxylate/hydroxypyruvate reductase A [ghrA]. 1 313 65.694 T 25-04-2017 IPR023514 Glyoxylate/hydroxypyruvate reductase A GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 A4U88_RS09370 4b66c229daccd1d6c6d49082d7d8d6b0 313 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 217 233 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS09370 4b66c229daccd1d6c6d49082d7d8d6b0 313 SUPERFAMILY SSF51735 97 278 2.21E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09370 4b66c229daccd1d6c6d49082d7d8d6b0 313 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 278 8.8E-47 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS03020 236fced5f31b429d4cc8754bd0fa9344 258 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.032 T 25-04-2017 IPR005583 Peroxide stress protein YaaA A4U88_RS03020 236fced5f31b429d4cc8754bd0fa9344 258 Pfam PF03883 Protein of unknown function (DUF328) 1 243 3.0E-91 T 25-04-2017 IPR005583 Peroxide stress protein YaaA A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 4.0E-14 T 25-04-2017 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.927 T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 SUPERFAMILY SSF74731 3 117 2.09E-50 T 25-04-2017 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 Pfam PF00453 Ribosomal protein L20 3 109 7.2E-49 T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.7E-52 T 25-04-2017 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS10495 1bd7db0526752a6c736b2c229eee2abc 118 Gene3D G3DSA:1.10.1900.20 55 117 3.4E-31 T 25-04-2017 A4U88_RS20945 794c7bb403b15c79de0fb8c96ffcc79f 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 2.1E-164 T 25-04-2017 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain A4U88_RS20945 794c7bb403b15c79de0fb8c96ffcc79f 386 SUPERFAMILY SSF52440 174 279 1.78E-41 T 25-04-2017 IPR016185 Pre-ATP-grasp domain A4U88_RS20945 794c7bb403b15c79de0fb8c96ffcc79f 386 SUPERFAMILY SSF56059 1 168 1.65E-94 T 25-04-2017 A4U88_RS20945 794c7bb403b15c79de0fb8c96ffcc79f 386 SUPERFAMILY SSF56059 266 382 1.65E-94 T 25-04-2017 A4U88_RS18410 fb6dd6ae10c48d61e09e397a4c266621 276 Pfam PF14581 SseB protein C-terminal domain 149 259 1.4E-36 T 25-04-2017 IPR027945 SseB protein, C-terminal A4U88_RS18410 fb6dd6ae10c48d61e09e397a4c266621 276 Pfam PF07179 SseB protein N-terminal domain 15 133 1.4E-25 T 25-04-2017 IPR009839 SseB protein N-terminal domain A4U88_RS11185 616b3a945682e243d379a34f04c0a26f 216 Gene3D G3DSA:1.10.3720.10 9 203 5.6E-33 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11185 616b3a945682e243d379a34f04c0a26f 216 SUPERFAMILY SSF161098 13 204 9.68E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS11185 616b3a945682e243d379a34f04c0a26f 216 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 205 5.1E-20 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 Pfam PF13450 NAD(P)-binding Rossmann-like domain 159 201 5.6E-8 T 25-04-2017 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 SUPERFAMILY SSF51905 154 504 8.95E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 SUPERFAMILY SSF51905 621 659 8.95E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 Gene3D G3DSA:3.50.50.60 300 310 2.5E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 Gene3D G3DSA:3.50.50.60 154 243 2.5E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 Gene3D G3DSA:3.50.50.60 398 505 2.5E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS05360 e8f0fef3524f79de778b4b1b826b65e9 670 Pfam PF01593 Flavin containing amine oxidoreductase 385 655 6.0E-7 T 25-04-2017 IPR002937 Amine oxidase GO:0016491|GO:0055114 A4U88_RS15115 ac0b36725e2719029e604535ebe078a0 110 Pfam PF04965 Gene 25-like lysozyme 12 84 1.0E-14 T 25-04-2017 IPR007048 GpW/Gp25/anti-adapter protein IraD A4U88_RS15115 ac0b36725e2719029e604535ebe078a0 110 SUPERFAMILY SSF160719 6 106 7.59E-27 T 25-04-2017 A4U88_RS15115 ac0b36725e2719029e604535ebe078a0 110 Gene3D G3DSA:3.10.450.40 3 107 5.3E-34 T 25-04-2017 A4U88_RS11475 7fd04e850a092cc36148ea85ebb56d95 374 Pfam PF15633 HYD1 signature containing ADP-ribosyltransferase 279 366 8.7E-11 T 25-04-2017 IPR028920 Tox-ART-HYD1 domain A4U88_RS11475 7fd04e850a092cc36148ea85ebb56d95 374 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 182 266 4.5E-27 T 25-04-2017 IPR022385 Rhs repeat-associated core GO:0097264 A4U88_RS11475 7fd04e850a092cc36148ea85ebb56d95 374 Pfam PF03527 RHS protein 155 190 1.8E-14 T 25-04-2017 IPR001826 RHS protein A4U88_RS20080 4c163b348a6fb5799f03599375d15cbe 366 SUPERFAMILY SSF53822 55 340 2.19E-38 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS20080 4c163b348a6fb5799f03599375d15cbe 366 Gene3D G3DSA:3.40.50.2300 181 340 1.8E-9 T 25-04-2017 A4U88_RS20080 4c163b348a6fb5799f03599375d15cbe 366 Pfam PF13407 Periplasmic binding protein domain 59 306 4.6E-28 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS20080 4c163b348a6fb5799f03599375d15cbe 366 Gene3D G3DSA:3.40.50.2300 56 180 6.5E-22 T 25-04-2017 A4U88_RS00355 969a4f131c37db3ab9e3e2f18934ea6e 249 Gene3D G3DSA:3.40.50.720 9 223 3.5E-30 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00355 969a4f131c37db3ab9e3e2f18934ea6e 249 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 177 5.3E-19 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS00355 969a4f131c37db3ab9e3e2f18934ea6e 249 SUPERFAMILY SSF51735 9 239 2.1E-36 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS04975 46460531ff91127620b3a8f5e916ae5c 124 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 59 122 2.8E-27 T 25-04-2017 IPR004509 Competence protein ComEA, helix-hairpin-helix domain A4U88_RS04975 46460531ff91127620b3a8f5e916ae5c 124 Gene3D G3DSA:1.10.150.280 58 122 4.6E-16 T 25-04-2017 A4U88_RS04975 46460531ff91127620b3a8f5e916ae5c 124 SUPERFAMILY SSF47781 51 120 2.56E-25 T 25-04-2017 IPR010994 RuvA domain 2-like A4U88_RS04975 46460531ff91127620b3a8f5e916ae5c 124 Pfam PF12836 Helix-hairpin-helix motif 62 122 1.4E-21 T 25-04-2017 A4U88_RS07885 b3c4a717cf823235f692223fe9e86386 139 Pfam PF00583 Acetyltransferase (GNAT) family 44 116 6.8E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS07885 b3c4a717cf823235f692223fe9e86386 139 SUPERFAMILY SSF55729 10 137 1.67E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07885 b3c4a717cf823235f692223fe9e86386 139 Gene3D G3DSA:3.40.630.30 38 137 8.2E-26 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS08750 96704c7e754c53017b627e6ba053f0f4 466 ProSitePatterns PS00218 Amino acid permeases signature. 52 82 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS08750 96704c7e754c53017b627e6ba053f0f4 466 PIRSF PIRSF006060 2 465 3.1E-69 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS08750 96704c7e754c53017b627e6ba053f0f4 466 Pfam PF00324 Amino acid permease 27 464 9.8E-119 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 322 330 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 298 361 5.0E-13 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 Pfam PF03476 MOSC N-terminal beta barrel domain 2 116 2.4E-29 T 25-04-2017 IPR005303 MOSC, N-terminal beta barrel A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 SUPERFAMILY SSF141673 4 132 2.35E-30 T 25-04-2017 A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 SUPERFAMILY SSF50800 147 263 4.76E-16 T 25-04-2017 IPR011037 Pyruvate kinase-like, insert domain A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 SUPERFAMILY SSF50800 4 50 4.76E-16 T 25-04-2017 IPR011037 Pyruvate kinase-like, insert domain A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 SUPERFAMILY SSF54292 282 366 6.55E-23 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 Pfam PF03473 MOSC domain 139 261 7.7E-30 T 25-04-2017 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 A4U88_RS08490 2a6fbd01d9ee20eae366a72e655be316 367 Gene3D G3DSA:3.10.20.30 278 366 9.2E-23 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS00840 92f5140f3ceba8f65223d078dd4c930a 317 Pfam PF02687 FtsX-like permease family 192 307 1.7E-9 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS00840 92f5140f3ceba8f65223d078dd4c930a 317 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 19 316 5.3E-128 T 25-04-2017 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 A4U88_RS00840 92f5140f3ceba8f65223d078dd4c930a 317 PIRSF PIRSF003097 16 313 1.7E-92 T 25-04-2017 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 A4U88_RS00735 31ecc6e1928679f6f695d30c05255c15 347 SUPERFAMILY SSF53474 14 335 2.29E-35 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS00735 31ecc6e1928679f6f695d30c05255c15 347 Pfam PF12146 Serine aminopeptidase, S33 55 315 1.4E-53 T 25-04-2017 IPR022742 Serine aminopeptidase, S33 A4U88_RS00735 31ecc6e1928679f6f695d30c05255c15 347 Gene3D G3DSA:3.40.50.1820 31 332 7.1E-31 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 88 2.9E-8 T 25-04-2017 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 Gene3D G3DSA:3.90.180.10 22 153 2.9E-36 T 25-04-2017 IPR011032 GroES-like A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 SUPERFAMILY SSF51735 116 281 9.38E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 Pfam PF13602 Zinc-binding dehydrogenase 192 331 1.5E-20 T 25-04-2017 A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 SUPERFAMILY SSF50129 11 142 5.93E-31 T 25-04-2017 IPR011032 GroES-like A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 12 331 6.8E-117 T 25-04-2017 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 SMART SM00829 14 331 2.8E-9 T 25-04-2017 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 A4U88_RS02930 7d1bc2cc60a47243bc050a74dbdcc12e 333 Gene3D G3DSA:3.40.50.720 154 243 2.2E-12 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS21490 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Gene3D G3DSA:1.10.286.20 1 43 6.7E-17 T 25-04-2017 A4U88_RS21490 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Pfam PF14760 Rnk N-terminus 4 43 8.0E-13 T 25-04-2017 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain A4U88_RS21490 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 124 9.6E-18 T 25-04-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 A4U88_RS21490 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Gene3D G3DSA:3.10.50.30 46 136 1.7E-29 T 25-04-2017 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 A4U88_RS21490 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 SUPERFAMILY SSF54534 49 126 3.53E-18 T 25-04-2017 A4U88_RS21490 4359c4ae5b6ce5de2a84d1fa20c8e4cf 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.418 T 25-04-2017 IPR028625 Regulator of nucleoside diphosphate kinase GO:0065007|GO:0070063 A4U88_RS22660 aaee3d5460bae21f82dbfd27ae5adbbf 119 Pfam PF10748 Protein of unknown function (DUF2531) 10 94 1.9E-8 T 25-04-2017 IPR019684 Protein of unknown function DUF2531 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.9E-11 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.9E-11 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 230 2.9E-11 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 PRINTS PR00412 Epoxide hydrolase signature 47 62 5.9E-6 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 PRINTS PR00412 Epoxide hydrolase signature 248 270 5.9E-6 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 PRINTS PR00412 Epoxide hydrolase signature 27 45 5.9E-6 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 Pfam PF12146 Serine aminopeptidase, S33 23 256 6.6E-24 T 25-04-2017 IPR022742 Serine aminopeptidase, S33 A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 Gene3D G3DSA:3.40.50.1820 3 272 7.0E-67 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15965 1c83cef1072e313d8052ddb082f89978 276 SUPERFAMILY SSF53474 2 272 5.87E-61 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS18895 070952b06121ea7b927301361f5a39a2 126 SUPERFAMILY SSF54427 2 123 3.38E-34 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS18895 070952b06121ea7b927301361f5a39a2 126 Gene3D G3DSA:3.10.450.50 1 123 6.3E-43 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS18895 070952b06121ea7b927301361f5a39a2 126 Pfam PF14534 Domain of unknown function (DUF4440) 24 110 1.4E-5 T 25-04-2017 IPR027843 Domain of unknown function DUF4440 A4U88_RS18895 070952b06121ea7b927301361f5a39a2 126 PIRSF PIRSF029394 1 126 1.5E-44 T 25-04-2017 IPR016918 Uncharacterised conserved protein UCP029394 A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 Gene3D G3DSA:3.30.1700.10 129 283 1.2E-62 T 25-04-2017 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 SUPERFAMILY SSF54211 134 278 2.35E-54 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 1.1E-108 T 25-04-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.21 T 25-04-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 Gene3D G3DSA:3.30.230.20 3 125 1.8E-45 T 25-04-2017 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 301 1.7E-157 T 25-04-2017 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 A4U88_RS03395 642740992e2537b107d510ec90a4ff3f 305 SUPERFAMILY SSF54211 3 124 3.49E-41 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 Gene3D G3DSA:3.90.79.10 3 151 2.6E-32 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.1E-7 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.1E-7 T 25-04-2017 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.584 T 25-04-2017 IPR022927 RNA pyrophosphohydrolase RppH A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 25-04-2017 IPR020084 NUDIX hydrolase, conserved site GO:0016787 A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 Pfam PF00293 NUDIX domain 7 146 2.1E-28 T 25-04-2017 IPR000086 NUDIX hydrolase domain GO:0016787 A4U88_RS19470 0c1d30881f071f7d38bd4cba347b7e65 175 SUPERFAMILY SSF55811 6 153 1.35E-32 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS00230 0b44543fda71840aaeadf716c74affbe 464 Pfam PF12390 Selenocysteine synthase N terminal 9 48 2.9E-8 T 25-04-2017 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 A4U88_RS00230 0b44543fda71840aaeadf716c74affbe 464 SUPERFAMILY SSF53383 73 391 1.68E-47 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS00230 0b44543fda71840aaeadf716c74affbe 464 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 460 8.6E-185 T 25-04-2017 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 A4U88_RS00230 0b44543fda71840aaeadf716c74affbe 464 Pfam PF03841 L-seryl-tRNA selenium transferase 83 451 2.1E-171 T 25-04-2017 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 A4U88_RS00230 0b44543fda71840aaeadf716c74affbe 464 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 464 249.391 T 25-04-2017 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 A4U88_RS00230 0b44543fda71840aaeadf716c74affbe 464 Gene3D G3DSA:3.40.640.10 133 318 1.9E-32 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS10790 fa5e817c770ac223aa036301f6103c16 227 Pfam PF00929 Exonuclease 31 205 3.4E-37 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS10790 fa5e817c770ac223aa036301f6103c16 227 SMART SM00479 29 214 3.4E-40 T 25-04-2017 IPR013520 Exonuclease, RNase T/DNA polymerase III A4U88_RS10790 fa5e817c770ac223aa036301f6103c16 227 TIGRFAM TIGR01298 RNaseT: ribonuclease T 21 219 6.8E-107 T 25-04-2017 IPR005987 Ribonuclease T GO:0004540|GO:0006396 A4U88_RS10790 fa5e817c770ac223aa036301f6103c16 227 SUPERFAMILY SSF53098 20 218 2.14E-58 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS10790 fa5e817c770ac223aa036301f6103c16 227 Gene3D G3DSA:3.30.420.10 21 219 5.0E-59 T 25-04-2017 IPR012337 Ribonuclease H-like domain GO:0003676 A4U88_RS10790 fa5e817c770ac223aa036301f6103c16 227 Hamap MF_00157 Ribonuclease T [rnt]. 1 227 119.802 T 25-04-2017 IPR005987 Ribonuclease T GO:0004540|GO:0006396 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 Pfam PF01047 MarR family 53 112 3.5E-16 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 SMART SM00347 46 148 1.7E-32 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 6.3E-23 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 6.3E-23 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 6.3E-23 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 6.3E-23 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 SUPERFAMILY SSF46785 20 163 2.13E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 25-04-2017 IPR023187 Transcriptional regulator MarR-type, conserved site A4U88_RS19020 7500019558328a8ad0e9d7638d326f46 172 Gene3D G3DSA:1.10.10.10 17 166 8.8E-33 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS04600 3205529acaeb496f9b53ae8ee8b98c70 371 SUPERFAMILY SSF53807 25 363 6.67E-54 T 25-04-2017 A4U88_RS04600 3205529acaeb496f9b53ae8ee8b98c70 371 Gene3D G3DSA:3.40.50.1980 175 348 3.3E-25 T 25-04-2017 A4U88_RS04600 3205529acaeb496f9b53ae8ee8b98c70 371 Pfam PF01497 Periplasmic binding protein 74 311 3.5E-28 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS04600 3205529acaeb496f9b53ae8ee8b98c70 371 Gene3D G3DSA:3.40.50.1980 37 174 8.3E-20 T 25-04-2017 A4U88_RS11140 46c89af2b68487d535b7f8b9d0b5d572 428 SUPERFAMILY SSF51445 70 356 8.6E-31 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS11140 46c89af2b68487d535b7f8b9d0b5d572 428 Gene3D G3DSA:3.20.20.80 75 271 1.4E-6 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS11140 46c89af2b68487d535b7f8b9d0b5d572 428 Pfam PF02638 Glycosyl hydrolase-like 10 41 376 6.0E-105 T 25-04-2017 IPR003790 Glycosyl hydrolase-like 10 A4U88_RS13035 688f1b53b955a6db4f105767678c093f 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 25-04-2017 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13035 688f1b53b955a6db4f105767678c093f 268 SUPERFAMILY SSF51366 1 266 1.79E-93 T 25-04-2017 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 A4U88_RS13035 688f1b53b955a6db4f105767678c093f 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 6.9E-98 T 25-04-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13035 688f1b53b955a6db4f105767678c093f 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 38.088 T 25-04-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13035 688f1b53b955a6db4f105767678c093f 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 1.7E-106 T 25-04-2017 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 A4U88_RS13035 688f1b53b955a6db4f105767678c093f 268 Gene3D G3DSA:3.20.20.70 1 267 5.6E-101 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS15560 0682b60e0bf476577770ca6d936d42b1 174 Pfam PF05638 Type VI secretion system effector, Hcp 10 149 9.0E-39 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS15560 0682b60e0bf476577770ca6d936d42b1 174 SUPERFAMILY SSF141452 7 172 1.7E-39 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS15560 0682b60e0bf476577770ca6d936d42b1 174 Gene3D G3DSA:2.30.110.20 7 172 9.6E-49 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 Gene3D G3DSA:3.90.550.10 2 271 6.6E-100 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 SUPERFAMILY SSF53448 2 282 7.43E-74 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 SUPERFAMILY SSF51182 185 469 2.2E-86 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 Gene3D G3DSA:2.60.120.10 358 469 2.4E-45 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 Pfam PF00483 Nucleotidyl transferase 4 285 3.2E-73 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 Pfam PF01050 Mannose-6-phosphate isomerase 315 465 5.1E-68 T 25-04-2017 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 A4U88_RS07770 b3f7e940ac72cffc99ab5f6859ff3cb6 470 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2 469 2.4E-225 T 25-04-2017 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 Pfam PF01145 SPFH domain / Band 7 family 98 270 1.4E-28 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 PRINTS PR00721 Stomatin signature 148 169 3.3E-6 T 25-04-2017 IPR001972 Stomatin family GO:0016020 A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 PRINTS PR00721 Stomatin signature 101 123 3.3E-6 T 25-04-2017 IPR001972 Stomatin family GO:0016020 A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 PRINTS PR00721 Stomatin signature 183 200 3.3E-6 T 25-04-2017 IPR001972 Stomatin family GO:0016020 A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 SMART SM00244 94 254 6.9E-40 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 SUPERFAMILY SSF117892 127 258 4.97E-19 T 25-04-2017 IPR001107 Band 7 domain A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 TIGRFAM TIGR01933 hflK: HflK protein 96 355 3.3E-120 T 25-04-2017 IPR010201 HflK GO:0016021 A4U88_RS01670 a4f25c8e7f525217f91e0003be4733de 416 Pfam PF12221 Bacterial membrane protein N terminal 1 58 1.1E-14 T 25-04-2017 IPR020980 Menbrane protein HflK, N-terminal A4U88_RS22970 06534d77b9addf0c687c6ba023c575f3 368 Gene3D G3DSA:1.10.287.460 158 196 1.9E-5 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 Gene3D G3DSA:1.10.10.10 145 205 3.2E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 SMART SM00421 143 200 2.9E-21 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 Gene3D G3DSA:3.40.50.2300 1 144 9.7E-34 T 25-04-2017 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 4.9E-19 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 SMART SM00448 2 115 1.5E-26 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 6.8E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 6.8E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 6.8E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 SUPERFAMILY SSF52172 1 118 3.27E-29 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 Pfam PF00072 Response regulator receiver domain 4 116 5.6E-25 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS06400 c9fd597402cb1cf0c01932f7cf80cf86 209 SUPERFAMILY SSF46894 133 206 1.29E-20 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82693 553 650 9.68E-16 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82866 785 1005 5.36E-44 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Gene3D G3DSA:1.10.3850.10 275 489 2.9E-53 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Gene3D G3DSA:1.10.3850.10 791 1005 5.0E-58 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Gene3D G3DSA:3.30.2090.10 701 783 7.4E-17 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 3.0E-266 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82714 183 264 1.7E-18 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82866 299 489 5.75E-47 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Gene3D G3DSA:3.30.70.1430 556 650 2.7E-12 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82693 41 130 1.64E-22 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Gene3D G3DSA:3.30.2090.10 182 266 2.0E-21 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 Gene3D G3DSA:3.30.70.1430 42 140 3.2E-25 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82714 701 784 2.49E-16 T 25-04-2017 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 1.2E-71 T 25-04-2017 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82693 267 321 1.02E-17 T 25-04-2017 A4U88_RS08700 dc9b066e70f1c2f8110dd0f4daffb791 1026 SUPERFAMILY SSF82693 137 181 1.02E-17 T 25-04-2017 A4U88_RS17735 ff7cdbdbaa67a4f2eb62095684b74721 126 Pfam PF10828 Protein of unknown function (DUF2570) 9 111 1.8E-31 T 25-04-2017 IPR022538 Protein of unknown function DUF2570 A4U88_RS19625 57b143242e36157f552126d91dc9f1e5 353 Gene3D G3DSA:2.60.40.1090 205 349 6.6E-14 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS19625 57b143242e36157f552126d91dc9f1e5 353 Pfam PF00419 Fimbrial protein 206 353 2.0E-20 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS19625 57b143242e36157f552126d91dc9f1e5 353 SUPERFAMILY SSF49401 215 350 1.44E-14 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 226 1.6E-53 T 25-04-2017 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 Gene3D G3DSA:3.10.290.10 5 60 2.7E-19 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 SUPERFAMILY SSF55120 69 229 1.65E-38 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 Pfam PF01479 S4 domain 8 52 2.5E-10 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 SUPERFAMILY SSF55174 7 62 2.69E-13 T 25-04-2017 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 SMART SM00363 7 63 1.8E-11 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 Pfam PF00849 RNA pseudouridylate synthase 69 195 5.5E-14 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS18270 730bf4759393944d1cb45ab4a1c76645 289 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 25-04-2017 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 A4U88_RS23635 e3664ee854f996b12770f11897454283 232 Gene3D G3DSA:3.40.50.2300 2 126 3.2E-41 T 25-04-2017 A4U88_RS23635 e3664ee854f996b12770f11897454283 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 1.1E-20 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS23635 e3664ee854f996b12770f11897454283 232 SMART SM00448 2 111 4.1E-46 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS23635 e3664ee854f996b12770f11897454283 232 Pfam PF00072 Response regulator receiver domain 4 112 3.4E-30 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS23635 e3664ee854f996b12770f11897454283 232 SUPERFAMILY SSF52172 2 188 7.12E-41 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS23635 e3664ee854f996b12770f11897454283 232 Gene3D G3DSA:1.10.10.10 132 229 4.2E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23635 e3664ee854f996b12770f11897454283 232 SMART SM00862 152 228 7.2E-22 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS21795 94aefdc63591799faffeebc07881b343 70 Pfam PF07338 Protein of unknown function (DUF1471) 24 68 4.1E-8 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS21795 94aefdc63591799faffeebc07881b343 70 Gene3D G3DSA:3.30.1660.10 23 68 6.9E-10 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS21795 94aefdc63591799faffeebc07881b343 70 SUPERFAMILY SSF159871 3 68 1.44E-12 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS20095 32ec84d03ea3f1f70e7c3530b4327b72 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 8.7E-40 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS20095 32ec84d03ea3f1f70e7c3530b4327b72 156 Gene3D G3DSA:2.60.120.370 1 151 3.0E-45 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS20095 32ec84d03ea3f1f70e7c3530b4327b72 156 Pfam PF04074 Domain of unknown function (DUF386) 1 150 1.5E-39 T 25-04-2017 IPR004375 YhcH/YjgK/YiaL family A4U88_RS20095 32ec84d03ea3f1f70e7c3530b4327b72 156 SUPERFAMILY SSF51197 1 151 4.39E-39 T 25-04-2017 A4U88_RS14730 9e877254c4a09d021baa9014156972ad 267 PIRSF PIRSF029288 1 267 3.0E-77 T 25-04-2017 IPR009211 Predicted virulence protein, SciE type A4U88_RS14730 9e877254c4a09d021baa9014156972ad 267 Pfam PF07024 ImpE protein 143 261 4.4E-43 T 25-04-2017 IPR009211 Predicted virulence protein, SciE type A4U88_RS14730 9e877254c4a09d021baa9014156972ad 267 SUPERFAMILY SSF144059 2 265 1.57E-78 T 25-04-2017 A4U88_RS10170 22cce29046d51e98bde85bf0d9eaa5c9 403 Gene3D G3DSA:1.20.1250.20 22 198 1.7E-18 T 25-04-2017 A4U88_RS10170 22cce29046d51e98bde85bf0d9eaa5c9 403 Gene3D G3DSA:1.20.1250.20 221 387 4.2E-8 T 25-04-2017 A4U88_RS10170 22cce29046d51e98bde85bf0d9eaa5c9 403 SUPERFAMILY SSF103473 19 391 1.44E-47 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10170 22cce29046d51e98bde85bf0d9eaa5c9 403 Pfam PF07690 Major Facilitator Superfamily 27 249 9.5E-21 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS23590 60b9abd055db794519a12b94c4f93f3f 203 SUPERFAMILY SSF46785 6 179 3.35E-27 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23590 60b9abd055db794519a12b94c4f93f3f 203 Pfam PF08279 HTH domain 7 42 3.5E-5 T 25-04-2017 IPR013196 Helix-turn-helix, type 11 A4U88_RS23590 60b9abd055db794519a12b94c4f93f3f 203 Gene3D G3DSA:1.10.10.10 6 87 2.3E-12 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16780 79213aa859deb1c573650ea5a1045bd4 414 SUPERFAMILY SSF103473 10 407 4.97E-35 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16780 79213aa859deb1c573650ea5a1045bd4 414 Pfam PF07690 Major Facilitator Superfamily 26 369 1.4E-22 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS16780 79213aa859deb1c573650ea5a1045bd4 414 Gene3D G3DSA:1.20.1250.20 234 408 2.8E-11 T 25-04-2017 A4U88_RS16780 79213aa859deb1c573650ea5a1045bd4 414 Gene3D G3DSA:1.20.1250.20 23 204 1.8E-17 T 25-04-2017 A4U88_RS22605 2027d4b6205f092909b4d716415fcc90 108 Gene3D G3DSA:2.102.10.10 2 107 4.9E-41 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS22605 2027d4b6205f092909b4d716415fcc90 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 2.3E-36 T 25-04-2017 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 A4U88_RS22605 2027d4b6205f092909b4d716415fcc90 108 SUPERFAMILY SSF50022 1 107 2.78E-36 T 25-04-2017 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 A4U88_RS22605 2027d4b6205f092909b4d716415fcc90 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 107 1.2E-39 T 25-04-2017 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 A4U88_RS03220 b9c9ef9881beb4d7f89d79d269e41dff 256 Pfam PF09335 SNARE associated Golgi protein 36 159 1.5E-18 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS18170 c9296bf07cf73cebe9f4326321b51000 349 SMART SM01133 68 325 9.6E-39 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS18170 c9296bf07cf73cebe9f4326321b51000 349 SUPERFAMILY SSF51569 57 242 1.9E-64 T 25-04-2017 A4U88_RS18170 c9296bf07cf73cebe9f4326321b51000 349 SUPERFAMILY SSF51569 270 343 1.9E-64 T 25-04-2017 A4U88_RS18170 c9296bf07cf73cebe9f4326321b51000 349 Pfam PF01791 DeoC/LacD family aldolase 69 325 4.0E-73 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS18170 c9296bf07cf73cebe9f4326321b51000 349 Gene3D G3DSA:3.20.20.70 53 345 2.0E-98 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS10895 06e797207690dc7109609a7832453fb4 286 Hamap MF_01639 Pyridoxal kinase PdxY [pdxY]. 1 286 53.745 T 25-04-2017 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282 A4U88_RS10895 06e797207690dc7109609a7832453fb4 286 SUPERFAMILY SSF53613 1 280 3.27E-75 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS10895 06e797207690dc7109609a7832453fb4 286 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 285 2.0E-132 T 25-04-2017 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 A4U88_RS10895 06e797207690dc7109609a7832453fb4 286 Pfam PF08543 Phosphomethylpyrimidine kinase 74 255 1.7E-13 T 25-04-2017 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 A4U88_RS10895 06e797207690dc7109609a7832453fb4 286 Gene3D G3DSA:3.40.1190.20 1 284 4.0E-89 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS18265 300c09c92c77e38d32d0ecb42078ec32 169 Pfam PF10908 Protein of unknown function (DUF2778) 23 148 7.0E-39 T 25-04-2017 IPR021225 Protein of unknown function DUF2778 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 Pfam PF01494 FAD binding domain 11 352 1.8E-52 T 25-04-2017 IPR002938 FAD-binding domain GO:0071949 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 Gene3D G3DSA:3.50.50.60 275 350 2.1E-45 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 Gene3D G3DSA:3.50.50.60 11 187 2.1E-45 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 SUPERFAMILY SSF51905 13 182 9.54E-56 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 SUPERFAMILY SSF51905 274 358 9.54E-56 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 2.5E-22 T 25-04-2017 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 2.5E-22 T 25-04-2017 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 161 176 2.5E-22 T 25-04-2017 A4U88_RS06895 2178261d7eb62cf28c51028692b9c08b 411 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 2.5E-22 T 25-04-2017 A4U88_RS07155 b16c33ff662ae37150d8bc9f0539cebe 86 Gene3D G3DSA:3.30.1660.10 18 86 7.3E-24 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS07155 b16c33ff662ae37150d8bc9f0539cebe 86 SUPERFAMILY SSF159871 3 86 1.83E-22 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS07155 b16c33ff662ae37150d8bc9f0539cebe 86 Pfam PF07338 Protein of unknown function (DUF1471) 35 86 3.7E-16 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS08575 f55358292cbfcbd029ebe68de2708f80 150 PIRSF PIRSF028777 1 139 2.9E-53 T 25-04-2017 IPR031308 Uncharacterised conserved protein UCP028777 A4U88_RS08575 f55358292cbfcbd029ebe68de2708f80 150 Pfam PF03733 Inner membrane component domain 4 53 3.0E-10 T 25-04-2017 IPR005185 Inner membrane component domain A4U88_RS08575 f55358292cbfcbd029ebe68de2708f80 150 Pfam PF03733 Inner membrane component domain 77 127 9.0E-18 T 25-04-2017 IPR005185 Inner membrane component domain A4U88_RS16280 3623297407ab8f8f1d13a068706252f8 662 SUPERFAMILY SSF56935 32 662 1.34E-124 T 25-04-2017 A4U88_RS16280 3623297407ab8f8f1d13a068706252f8 662 Gene3D G3DSA:2.170.130.10 23 157 6.8E-41 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS16280 3623297407ab8f8f1d13a068706252f8 662 Pfam PF07715 TonB-dependent Receptor Plug Domain 45 155 3.7E-28 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS16280 3623297407ab8f8f1d13a068706252f8 662 Pfam PF00593 TonB dependent receptor 403 661 1.3E-39 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS16280 3623297407ab8f8f1d13a068706252f8 662 Gene3D G3DSA:2.40.170.20 158 662 2.1E-99 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS16280 3623297407ab8f8f1d13a068706252f8 662 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 25-04-2017 IPR010916 TonB box, conserved site A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 25-04-2017 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 Gene3D G3DSA:3.30.428.10 176 345 5.1E-77 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 346 1.7E-201 T 25-04-2017 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 346 4.4E-70 T 25-04-2017 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 Gene3D G3DSA:3.30.428.10 44 175 7.5E-56 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 SUPERFAMILY SSF54197 179 345 3.74E-56 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 SUPERFAMILY SSF54197 4 177 9.16E-71 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 176 2.4E-68 T 25-04-2017 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 A4U88_RS06150 c19ad2398b86a1cadcfc5d504f72cb85 350 PIRSF PIRSF000808 1 341 8.3E-124 T 25-04-2017 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:3.40.1380.10 63 191 1.1E-43 T 25-04-2017 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 SUPERFAMILY SSF52943 2 287 6.54E-97 T 25-04-2017 IPR023633 ATPase, F1 complex, gamma subunit domain Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 Pfam PF00231 ATP synthase 5 286 1.9E-91 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 25-04-2017 IPR023632 ATPase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:1.10.287.80 236 282 4.6E-30 T 25-04-2017 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:1.10.287.80 19 60 4.3E-39 T 25-04-2017 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 Gene3D G3DSA:1.10.287.80 202 235 4.3E-39 T 25-04-2017 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 8.3E-112 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.369 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.8E-38 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 1.8E-38 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 1.8E-38 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS24125 7994efc9a5831ff283ae016e0d282485 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.8E-38 T 25-04-2017 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 SUPERFAMILY SSF111369 85 319 4.18E-57 T 25-04-2017 A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 Gene3D G3DSA:2.40.50.100 92 126 9.7E-25 T 25-04-2017 A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 Gene3D G3DSA:2.40.50.100 201 236 9.7E-25 T 25-04-2017 A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 4 411 53.199 T 25-04-2017 IPR022824 Multidrug resistance protein MdtA A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 Pfam PF13533 Biotin-lipoyl like 93 141 7.7E-16 T 25-04-2017 A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 68 395 1.8E-79 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS18085 4b282a0a7955253ac6d4da550392ab20 417 Pfam PF13437 HlyD family secretion protein 204 306 4.6E-7 T 25-04-2017 A4U88_RS10945 532b86f92f066c0c359ae984373ed8c9 167 Gene3D G3DSA:2.60.120.10 12 165 4.2E-27 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS10945 532b86f92f066c0c359ae984373ed8c9 167 SUPERFAMILY SSF51182 36 137 6.86E-23 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS10945 532b86f92f066c0c359ae984373ed8c9 167 Pfam PF07883 Cupin domain 52 121 2.1E-17 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 SUPERFAMILY SSF159871 3 94 5.1E-25 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 SUPERFAMILY SSF159871 108 179 3.27E-18 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 Gene3D G3DSA:3.30.1660.10 110 175 6.1E-26 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 Gene3D G3DSA:3.30.1660.10 250 316 5.2E-25 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 Gene3D G3DSA:3.30.1660.10 24 90 4.0E-26 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 Pfam PF07338 Protein of unknown function (DUF1471) 260 316 3.8E-21 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 Pfam PF07338 Protein of unknown function (DUF1471) 119 175 1.2E-18 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 Pfam PF07338 Protein of unknown function (DUF1471) 34 90 3.9E-20 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 SUPERFAMILY SSF159871 239 316 2.75E-19 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12520 102352b61a24e978a9f0581117135d52 316 PIRSF PIRSF014774 1 316 4.1E-189 T 25-04-2017 IPR025539 YdgH protein A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PIRSF PIRSF002097 1 98 4.0E-46 T 25-04-2017 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 Gene3D G3DSA:1.10.10.60 27 98 1.7E-28 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.769 T 25-04-2017 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.7E-14 T 25-04-2017 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 7.6E-35 T 25-04-2017 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 7.6E-35 T 25-04-2017 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 7.6E-35 T 25-04-2017 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 7.6E-35 T 25-04-2017 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 A4U88_RS21710 e9ff87b2f6cbc07850e519f60813e1f6 98 SUPERFAMILY SSF46689 4 98 3.88E-27 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS12750 b410bff872404851c6cda485098013be 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 2.5E-43 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12750 b410bff872404851c6cda485098013be 321 SUPERFAMILY SSF161098 69 138 5.1E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12750 b410bff872404851c6cda485098013be 321 SUPERFAMILY SSF161098 175 300 5.1E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12750 b410bff872404851c6cda485098013be 321 Gene3D G3DSA:1.10.3720.10 68 141 7.6E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12750 b410bff872404851c6cda485098013be 321 Gene3D G3DSA:1.10.3720.10 181 309 7.6E-24 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 25-04-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 25-04-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 25-04-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 3 102 8.7E-44 T 25-04-2017 IPR027486 Ribosomal protein S10 domain A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 25-04-2017 IPR027486 Ribosomal protein S10 domain A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.0E-35 T 25-04-2017 IPR027486 Ribosomal protein S10 domain A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 25-04-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 25-04-2017 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 25-04-2017 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22350 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 25-04-2017 IPR027486 Ribosomal protein S10 domain A4U88_RS03310 266319e3269e3ee73db37428fd80f40a 146 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 9 142 2.0E-51 T 25-04-2017 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 A4U88_RS03310 266319e3269e3ee73db37428fd80f40a 146 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 145 33.823 T 25-04-2017 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 A4U88_RS03310 266319e3269e3ee73db37428fd80f40a 146 Pfam PF06610 L-alanine exporter 5 142 9.8E-70 T 25-04-2017 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 A4U88_RS23900 c8ad88bb7356041dca38b11cf50f5d82 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 1.8E-52 T 25-04-2017 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 A4U88_RS23900 c8ad88bb7356041dca38b11cf50f5d82 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 6.0E-69 T 25-04-2017 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 A4U88_RS23900 c8ad88bb7356041dca38b11cf50f5d82 145 SUPERFAMILY SSF69500 1 144 1.31E-56 T 25-04-2017 IPR023509 D-Tyr tRNAtyr deacylase-like domain A4U88_RS23900 c8ad88bb7356041dca38b11cf50f5d82 145 Gene3D G3DSA:3.50.80.10 1 144 8.6E-57 T 25-04-2017 IPR023509 D-Tyr tRNAtyr deacylase-like domain A4U88_RS23900 c8ad88bb7356041dca38b11cf50f5d82 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.853 T 25-04-2017 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 A4U88_RS01200 de602494a0b92f3ed393fba7816f3886 377 SUPERFAMILY SSF102114 37 365 7.98E-55 T 25-04-2017 A4U88_RS01200 de602494a0b92f3ed393fba7816f3886 377 Pfam PF04055 Radical SAM superfamily 83 221 8.9E-9 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS01200 de602494a0b92f3ed393fba7816f3886 377 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 5 369 7.3E-162 T 25-04-2017 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 A4U88_RS01200 de602494a0b92f3ed393fba7816f3886 377 Gene3D G3DSA:3.20.20.70 37 364 1.3E-49 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS01200 de602494a0b92f3ed393fba7816f3886 377 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 362 9.2E-24 T 25-04-2017 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS01200 de602494a0b92f3ed393fba7816f3886 377 SMART SM00876 259 363 1.3E-31 T 25-04-2017 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 A4U88_RS09880 84674739aacc5d2f09684f60db604944 150 Gene3D G3DSA:3.40.630.30 7 140 5.9E-32 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09880 84674739aacc5d2f09684f60db604944 150 SUPERFAMILY SSF55729 8 140 2.03E-29 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09880 84674739aacc5d2f09684f60db604944 150 Pfam PF00583 Acetyltransferase (GNAT) family 62 140 2.3E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 SUPERFAMILY SSF53901 337 591 1.13E-32 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 601 708 3.5E-29 T 25-04-2017 IPR014031 Beta-ketoacyl synthase, C-terminal A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 SMART SM00825 Beta-ketoacyl synthase 338 749 1.9E-18 T 25-04-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 SUPERFAMILY SSF53901 566 759 5.38E-41 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Gene3D G3DSA:3.40.47.10 346 591 1.8E-26 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Gene3D G3DSA:3.40.47.10 607 760 2.5E-38 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Gene3D G3DSA:3.40.47.10 151 272 7.6E-15 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Gene3D G3DSA:3.40.47.10 11 114 7.6E-15 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 SUPERFAMILY SSF53901 163 265 1.07E-16 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 SUPERFAMILY SSF53901 9 134 1.07E-16 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 337 590 1.8E-28 T 25-04-2017 IPR014030 Beta-ketoacyl synthase, N-terminal A4U88_RS05320 9b737e8421e5162cb25f97673ab684fe 762 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 9 242 3.1E-8 T 25-04-2017 IPR014030 Beta-ketoacyl synthase, N-terminal A4U88_RS09290 98f549d49dde849ca6aade462ae53895 196 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 195 2.3E-48 T 25-04-2017 IPR014094 Penicillin-binding protein activator LpoB A4U88_RS09290 98f549d49dde849ca6aade462ae53895 196 Pfam PF13036 Peptidoglycan-synthase activator LpoB 7 194 9.4E-47 T 25-04-2017 IPR014094 Penicillin-binding protein activator LpoB A4U88_RS09290 98f549d49dde849ca6aade462ae53895 196 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 1 195 36.365 T 25-04-2017 IPR014094 Penicillin-binding protein activator LpoB A4U88_RS21585 179c9d597c92817893f475e8752f9c26 481 PIRSF PIRSF004919 14 481 1.3E-146 T 25-04-2017 IPR025502 TldD A4U88_RS21585 179c9d597c92817893f475e8752f9c26 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 2.5E-65 T 25-04-2017 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 A4U88_RS21585 179c9d597c92817893f475e8752f9c26 481 SUPERFAMILY SSF111283 19 480 1.83E-131 T 25-04-2017 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 Pfam PF07687 Peptidase dimerisation domain 207 292 1.9E-7 T 25-04-2017 IPR011650 Peptidase M20, dimerisation domain A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 Pfam PF01546 Peptidase family M20/M25/M40 72 480 1.6E-20 T 25-04-2017 IPR002933 Peptidase M20 GO:0008152|GO:0016787 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PIRSF PIRSF016599 1 485 2.4E-209 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 SUPERFAMILY SSF53187 10 182 1.65E-63 T 25-04-2017 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 SUPERFAMILY SSF53187 397 482 1.65E-63 T 25-04-2017 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 8 482 8.6E-182 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 251 270 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 363 381 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 450 472 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 206 223 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 101 119 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 135 152 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 159 177 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 428 444 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 PRINTS PR00934 X-His dipeptidase (M25) signature 80 99 3.1E-99 T 25-04-2017 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 Gene3D G3DSA:3.40.630.10 397 484 1.9E-107 T 25-04-2017 A4U88_RS04180 e77385ca390ce9dfcf11f4af90a3a753 486 Gene3D G3DSA:3.40.630.10 3 181 1.9E-107 T 25-04-2017 A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 SMART SM00345 19 77 2.3E-12 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 SUPERFAMILY SSF46785 11 81 4.85E-18 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 Pfam PF07729 FCD domain 87 210 1.6E-20 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 SUPERFAMILY SSF48008 85 218 3.14E-25 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 7.0E-16 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 SMART SM00895 87 211 4.8E-19 T 25-04-2017 IPR011711 GntR, C-terminal A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 Gene3D G3DSA:1.20.120.530 83 219 4.1E-30 T 25-04-2017 IPR008920 Transcription regulator FadR/GntR, C-terminal A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 Gene3D G3DSA:1.10.10.10 5 79 8.8E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 9.6E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS06835 0df89625b5239456fc72ffa2aef2fbc6 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 9.6E-5 T 25-04-2017 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 SMART SM00028 33 66 0.0016 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 SMART SM00028 67 100 0.48 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 SMART SM00028 137 170 0.031 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 11 236 2.2E-76 T 25-04-2017 IPR013360 Pilus biogenesis/stability type IV, PilW A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 Gene3D G3DSA:1.25.40.10 34 170 1.5E-23 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 Pfam PF13181 Tetratricopeptide repeat 137 169 0.021 T 25-04-2017 IPR019734 Tetratricopeptide repeat GO:0005515 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 SUPERFAMILY SSF48452 137 238 6.32E-6 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 Pfam PF13432 Tetratricopeptide repeat 37 100 1.6E-6 T 25-04-2017 A4U88_RS18395 6449971b9aa43378c72e0f280359e991 249 SUPERFAMILY SSF48452 37 169 2.43E-20 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS14120 5f027fff9ac6836210ee030dd3551d7b 349 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 347 25.358 T 25-04-2017 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530 A4U88_RS14120 5f027fff9ac6836210ee030dd3551d7b 349 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4 334 9.6E-127 T 25-04-2017 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530 A4U88_RS14120 5f027fff9ac6836210ee030dd3551d7b 349 Pfam PF00953 Glycosyl transferase family 4 70 228 1.2E-28 T 25-04-2017 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 A4U88_RS01790 9d3a0a7236faf179df8e80495f29350c 68 Gene3D G3DSA:3.30.1910.10 1 64 7.7E-35 T 25-04-2017 A4U88_RS01790 9d3a0a7236faf179df8e80495f29350c 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 61 8.7E-30 T 25-04-2017 IPR009491 Protein of unknown function DUF1107 A4U88_RS01790 9d3a0a7236faf179df8e80495f29350c 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 6.0E-26 T 25-04-2017 IPR009491 Protein of unknown function DUF1107 A4U88_RS17260 ebecdf9b31e19bf9fa6aa956b288b4f0 78 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 57 4.4E-20 T 25-04-2017 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 A4U88_RS17260 ebecdf9b31e19bf9fa6aa956b288b4f0 78 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 1.2E-18 T 25-04-2017 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 A4U88_RS15845 69b4a80003934c8b8d8d984caba61864 182 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 14 177 5.1E-55 T 25-04-2017 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 A4U88_RS15845 69b4a80003934c8b8d8d984caba61864 182 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 14 176 8.4E-55 T 25-04-2017 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 A4U88_RS19980 e304992a2d6308b0b6dcd0e24f6aaefa 176 SUPERFAMILY SSF55729 41 159 1.3E-17 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19980 e304992a2d6308b0b6dcd0e24f6aaefa 176 Pfam PF13673 Acetyltransferase (GNAT) domain 57 157 6.9E-10 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS19980 e304992a2d6308b0b6dcd0e24f6aaefa 176 Gene3D G3DSA:3.40.630.30 47 155 7.6E-15 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19150 7c8305a22efe8609ffb822a1f75b67f4 87 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 8.6E-29 T 25-04-2017 IPR009778 Modulator of Rho-dependent transcription termination A4U88_RS19150 7c8305a22efe8609ffb822a1f75b67f4 87 SUPERFAMILY SSF101744 1 84 1.36E-29 T 25-04-2017 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 A4U88_RS08015 293d9b641ec06e9b30ca2d17971e7b1e 244 Pfam PF01569 PAP2 superfamily 111 236 2.5E-9 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS08015 293d9b641ec06e9b30ca2d17971e7b1e 244 Gene3D G3DSA:1.20.144.10 75 215 1.9E-9 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS08015 293d9b641ec06e9b30ca2d17971e7b1e 244 SUPERFAMILY SSF48317 22 236 6.21E-13 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS06795 3bef99548116f5b0215451449ac8940e 310 Gene3D G3DSA:3.40.190.10 133 227 6.2E-9 T 25-04-2017 A4U88_RS06795 3bef99548116f5b0215451449ac8940e 310 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 32 284 1.2E-46 T 25-04-2017 A4U88_RS06795 3bef99548116f5b0215451449ac8940e 310 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 269 2.3E-77 T 25-04-2017 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 A4U88_RS06795 3bef99548116f5b0215451449ac8940e 310 Gene3D G3DSA:3.40.190.10 55 132 5.3E-6 T 25-04-2017 A4U88_RS06795 3bef99548116f5b0215451449ac8940e 310 SUPERFAMILY SSF53850 45 300 4.41E-44 T 25-04-2017 A4U88_RS06795 3bef99548116f5b0215451449ac8940e 310 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 306 6.3E-92 T 25-04-2017 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein GO:0015604|GO:0015716|GO:0043190 A4U88_RS22320 f8dac1c557d023b0b5dfdfbd193dce1b 110 Pfam PF00237 Ribosomal protein L22p/L17e 8 107 7.1E-34 T 25-04-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22320 f8dac1c557d023b0b5dfdfbd193dce1b 110 Gene3D G3DSA:3.90.470.10 1 109 6.5E-43 T 25-04-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22320 f8dac1c557d023b0b5dfdfbd193dce1b 110 SUPERFAMILY SSF54843 1 109 1.57E-42 T 25-04-2017 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22320 f8dac1c557d023b0b5dfdfbd193dce1b 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.807 T 25-04-2017 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22320 f8dac1c557d023b0b5dfdfbd193dce1b 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.5E-50 T 25-04-2017 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22320 f8dac1c557d023b0b5dfdfbd193dce1b 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 25-04-2017 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS23095 b285c6c5966178432a0b7c9ad22acd40 227 SUPERFAMILY SSF51206 28 141 8.38E-20 T 25-04-2017 IPR018490 Cyclic nucleotide-binding-like A4U88_RS23095 b285c6c5966178432a0b7c9ad22acd40 227 Gene3D G3DSA:2.60.120.10 25 141 2.6E-21 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS23095 b285c6c5966178432a0b7c9ad22acd40 227 Pfam PF13545 Crp-like helix-turn-helix domain 168 221 2.8E-9 T 25-04-2017 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 A4U88_RS23095 b285c6c5966178432a0b7c9ad22acd40 227 Pfam PF00027 Cyclic nucleotide-binding domain 34 116 2.9E-10 T 25-04-2017 IPR000595 Cyclic nucleotide-binding domain A4U88_RS23095 b285c6c5966178432a0b7c9ad22acd40 227 SUPERFAMILY SSF46785 152 221 1.09E-8 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23095 b285c6c5966178432a0b7c9ad22acd40 227 Gene3D G3DSA:1.10.10.10 160 221 1.5E-9 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10760 6cbb0eab28e9ee4b5f5c6b38ed71c1df 403 Pfam PF07690 Major Facilitator Superfamily 14 343 1.5E-39 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS10760 6cbb0eab28e9ee4b5f5c6b38ed71c1df 403 Gene3D G3DSA:1.20.1250.20 202 397 6.0E-16 T 25-04-2017 A4U88_RS10760 6cbb0eab28e9ee4b5f5c6b38ed71c1df 403 SUPERFAMILY SSF103473 6 383 1.83E-60 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10760 6cbb0eab28e9ee4b5f5c6b38ed71c1df 403 Gene3D G3DSA:1.20.1250.20 10 189 4.1E-28 T 25-04-2017 A4U88_RS10760 6cbb0eab28e9ee4b5f5c6b38ed71c1df 403 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 382 3.6E-108 T 25-04-2017 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 25-04-2017 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 Pfam PF00311 Phosphoenolpyruvate carboxylase 127 878 7.5E-292 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 25-04-2017 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 Gene3D G3DSA:1.20.1440.90 272 387 6.1E-33 T 25-04-2017 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 SUPERFAMILY SSF51621 6 878 0.0 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 5.7E-68 T 25-04-2017 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS23500 4c868b815345625e4dc168644f3fc2fb 878 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 878 18.356 T 25-04-2017 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 A4U88_RS10540 7b20ad44e1f9011ae6b8d4f024649262 326 Pfam PF00535 Glycosyl transferase family 2 11 172 1.0E-33 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS10540 7b20ad44e1f9011ae6b8d4f024649262 326 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 2 326 62.105 T 25-04-2017 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 A4U88_RS10540 7b20ad44e1f9011ae6b8d4f024649262 326 Gene3D G3DSA:3.90.550.10 8 151 1.2E-28 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS10540 7b20ad44e1f9011ae6b8d4f024649262 326 SUPERFAMILY SSF53448 8 230 1.8E-40 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS19645 fb1c91819c06e455ed6fcc298a8beb05 182 Gene3D G3DSA:1.10.443.10 6 179 2.5E-38 T 25-04-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS19645 fb1c91819c06e455ed6fcc298a8beb05 182 Pfam PF00589 Phage integrase family 6 175 2.9E-41 T 25-04-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS19645 fb1c91819c06e455ed6fcc298a8beb05 182 SUPERFAMILY SSF56349 5 181 2.91E-41 T 25-04-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 A4U88_RS01405 7b21f88a062e6b2ca664c03a319700ca 266 Gene3D G3DSA:1.10.10.10 14 103 1.3E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01405 7b21f88a062e6b2ca664c03a319700ca 266 SUPERFAMILY SSF46894 24 101 1.19E-13 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS01405 7b21f88a062e6b2ca664c03a319700ca 266 Pfam PF00486 Transcriptional regulatory protein, C terminal 27 101 2.2E-12 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS01405 7b21f88a062e6b2ca664c03a319700ca 266 SMART SM00862 25 101 5.2E-11 T 25-04-2017 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.313 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-18 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-18 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-18 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-18 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 25-04-2017 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 8.1E-38 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 Pfam PF01084 Ribosomal protein S18 19 68 7.8E-25 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 3.0E-22 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 SUPERFAMILY SSF46911 3 74 7.06E-29 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01750 4d776f2becc435db4210658806b3f9df 75 Gene3D G3DSA:4.10.640.10 8 74 1.1E-32 T 25-04-2017 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS15260 ef63d24230d9ffa81bde6f1fa42d9783 330 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 29 316 5.2E-154 T 25-04-2017 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.14+1.14.13.149|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176 A4U88_RS15260 ef63d24230d9ffa81bde6f1fa42d9783 330 Pfam PF05138 Phenylacetic acid catabolic protein 39 313 2.5E-100 T 25-04-2017 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 A4U88_RS15260 ef63d24230d9ffa81bde6f1fa42d9783 330 Gene3D G3DSA:1.20.1260.10 39 293 5.4E-100 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS15260 ef63d24230d9ffa81bde6f1fa42d9783 330 SUPERFAMILY SSF47240 49 292 9.85E-82 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS23185 3b423e70df59c39b28e1ddc87d7b006d 153 PRINTS PR00332 Histidine triad family signature 4 20 1.1E-7 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS23185 3b423e70df59c39b28e1ddc87d7b006d 153 PRINTS PR00332 Histidine triad family signature 25 43 1.1E-7 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS23185 3b423e70df59c39b28e1ddc87d7b006d 153 PRINTS PR00332 Histidine triad family signature 89 99 1.1E-7 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS23185 3b423e70df59c39b28e1ddc87d7b006d 153 Pfam PF01230 HIT domain 12 99 3.1E-10 T 25-04-2017 IPR001310 Histidine triad (HIT) protein A4U88_RS23185 3b423e70df59c39b28e1ddc87d7b006d 153 SUPERFAMILY SSF54197 1 106 2.47E-27 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS23185 3b423e70df59c39b28e1ddc87d7b006d 153 Gene3D G3DSA:3.30.428.10 2 150 2.3E-24 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS18870 b9146ba62bc6ce7999800abbd91ab54a 148 ProDom PD093913 YICN MEMBRANE INNER EXPORTED 1 144 4.0E-48 T 25-04-2017 IPR009587 Protein of unknown function DUF1198 A4U88_RS18870 b9146ba62bc6ce7999800abbd91ab54a 148 Pfam PF06711 Protein of unknown function (DUF1198) 1 142 4.9E-63 T 25-04-2017 IPR009587 Protein of unknown function DUF1198 A4U88_RS17950 47c876d25cd1f750ebcefbf62cc2ce3a 179 SUPERFAMILY SSF46785 4 144 9.49E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS17950 47c876d25cd1f750ebcefbf62cc2ce3a 179 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 4 139 3.0E-28 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS17950 47c876d25cd1f750ebcefbf62cc2ce3a 179 Pfam PF02082 Transcriptional regulator 4 83 2.0E-24 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS17950 47c876d25cd1f750ebcefbf62cc2ce3a 179 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 25-04-2017 IPR030489 Transcription regulator Rrf2-type, conserved site A4U88_RS17950 47c876d25cd1f750ebcefbf62cc2ce3a 179 Gene3D G3DSA:1.10.10.10 4 149 2.6E-42 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS12705 644575c2266fb06cc6c83a207c5530f8 119 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 7 119 2.1E-40 T 25-04-2017 IPR014320 Phage shock protein, PspC A4U88_RS12705 644575c2266fb06cc6c83a207c5530f8 119 Pfam PF04024 PspC domain 8 67 2.8E-17 T 25-04-2017 IPR007168 Phage shock protein, PspC, N-terminal A4U88_RS12730 66260105d662dffa8e142eb62d2bfcf1 395 SMART SM00833 255 372 4.0E-48 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS12730 66260105d662dffa8e142eb62d2bfcf1 395 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 255 372 2.6E-26 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS12730 66260105d662dffa8e142eb62d2bfcf1 395 Gene3D G3DSA:3.40.50.300 2 227 2.2E-73 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12730 66260105d662dffa8e142eb62d2bfcf1 395 SUPERFAMILY SSF52540 2 312 1.15E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12730 66260105d662dffa8e142eb62d2bfcf1 395 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 209 4.5E-55 T 25-04-2017 IPR003495 CobW/HypB/UreG, nucleotide-binding domain A4U88_RS12730 66260105d662dffa8e142eb62d2bfcf1 395 Gene3D G3DSA:3.30.1220.10 242 372 1.2E-15 T 25-04-2017 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal A4U88_RS01230 f6b213576755c75689c0e0d5c5737943 167 Hamap MF_01181 Regulator of sigma D [rsd]. 1 153 39.164 T 25-04-2017 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd A4U88_RS01230 f6b213576755c75689c0e0d5c5737943 167 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 148 1.6E-57 T 25-04-2017 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 A4U88_RS01230 f6b213576755c75689c0e0d5c5737943 167 PIRSF PIRSF016548 1 161 2.0E-54 T 25-04-2017 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 A4U88_RS06280 7ec9be88682e34e535f3a17561ec81c0 240 Gene3D G3DSA:3.40.50.300 1 226 2.6E-52 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06280 7ec9be88682e34e535f3a17561ec81c0 240 SUPERFAMILY SSF52540 2 225 1.68E-49 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06280 7ec9be88682e34e535f3a17561ec81c0 240 Pfam PF00005 ABC transporter 19 166 6.0E-23 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS06280 7ec9be88682e34e535f3a17561ec81c0 240 SMART SM00382 26 214 1.1E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS07890 9223b82b34428fba5b73d311cb6d3ca4 366 Gene3D G3DSA:2.120.10.30 6 363 7.0E-101 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS07890 9223b82b34428fba5b73d311cb6d3ca4 366 SUPERFAMILY SSF50952 23 363 3.4E-38 T 25-04-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 A4U88_RS07890 9223b82b34428fba5b73d311cb6d3ca4 366 Pfam PF07995 Glucose / Sorbosone dehydrogenase 30 362 5.7E-134 T 25-04-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 A4U88_RS20055 a2b5811c422ce34168fd0f31fdd0ed4f 243 Pfam PF04402 Protein of unknown function (DUF541) 34 235 9.7E-45 T 25-04-2017 IPR007497 Protein of unknown function DUF541 A4U88_RS17170 1118a9002843548f913af578f0ebe54d 93 Pfam PF08891 YfcL protein 4 87 1.1E-37 T 25-04-2017 IPR014987 Uncharacterised protein family YfcL A4U88_RS17170 1118a9002843548f913af578f0ebe54d 93 Gene3D G3DSA:1.10.357.10 5 78 3.4E-4 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS23100 75216ba4a512d6d94cec6de0cc42081f 313 SUPERFAMILY SSF53590 1 307 1.28E-85 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS23100 75216ba4a512d6d94cec6de0cc42081f 313 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 299 3.4E-62 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS23100 75216ba4a512d6d94cec6de0cc42081f 313 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 7 17 - T 25-04-2017 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 A4U88_RS23100 75216ba4a512d6d94cec6de0cc42081f 313 Gene3D G3DSA:3.90.245.10 2 308 4.9E-86 T 25-04-2017 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain A4U88_RS15860 4f35ddfce9676dc5864e8f577e55e98c 102 PIRSF PIRSF002736 1 97 3.5E-37 T 25-04-2017 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 A4U88_RS15860 4f35ddfce9676dc5864e8f577e55e98c 102 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 25.875 T 25-04-2017 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 A4U88_RS15860 4f35ddfce9676dc5864e8f577e55e98c 102 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 4.1E-29 T 25-04-2017 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein A4U88_RS15860 4f35ddfce9676dc5864e8f577e55e98c 102 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 80 5.0E-24 T 25-04-2017 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 A4U88_RS15860 4f35ddfce9676dc5864e8f577e55e98c 102 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 2.4E-30 T 25-04-2017 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 A4U88_RS01395 8b61b6aafe21d6c81349a6f2c6a8eae2 354 Gene3D G3DSA:2.130.10.10 46 332 3.2E-40 T 25-04-2017 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 A4U88_RS01395 8b61b6aafe21d6c81349a6f2c6a8eae2 354 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 282 321 7.7E-8 T 25-04-2017 IPR011964 YVTN beta-propeller repeat A4U88_RS01395 8b61b6aafe21d6c81349a6f2c6a8eae2 354 Pfam PF13360 PQQ-like domain 112 307 2.3E-5 T 25-04-2017 IPR002372 Pyrrolo-quinoline quinone repeat A4U88_RS01395 8b61b6aafe21d6c81349a6f2c6a8eae2 354 SUPERFAMILY SSF51004 31 341 3.92E-44 T 25-04-2017 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain A4U88_RS01865 0577df9d3482545c262a40f67a7b1f66 118 Gene3D G3DSA:1.10.10.10 3 74 1.1E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS01865 0577df9d3482545c262a40f67a7b1f66 118 Pfam PF02316 Mu DNA-binding domain 9 67 4.1E-13 T 25-04-2017 IPR003314 Mu-type HTH domain GO:0003677 A4U88_RS01865 0577df9d3482545c262a40f67a7b1f66 118 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 9 112 6.0E-5 T 25-04-2017 IPR010749 Protein of unknown function DUF1323 A4U88_RS01865 0577df9d3482545c262a40f67a7b1f66 118 SUPERFAMILY SSF46955 3 71 2.01E-22 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS10650 36cc872c7ab95189ddf519158dccdaef 366 Pfam PF01594 Domain of unknown function DUF20 15 345 9.0E-50 T 25-04-2017 IPR002549 Transmembrane protein TqsA-like A4U88_RS16120 31fbc8eb1e6651a75ee6802a95da85dc 359 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 4.6E-89 T 25-04-2017 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 A4U88_RS16120 31fbc8eb1e6651a75ee6802a95da85dc 359 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 354 1.9E-57 T 25-04-2017 IPR005495 Permease LptG/LptF-related GO:0016021 A4U88_RS15340 c5062468b226c2005f47da40c5892417 265 SUPERFAMILY SSF53474 25 251 6.99E-43 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS15340 c5062468b226c2005f47da40c5892417 265 Pfam PF07859 alpha/beta hydrolase fold 64 172 4.6E-8 T 25-04-2017 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 A4U88_RS15340 c5062468b226c2005f47da40c5892417 265 Gene3D G3DSA:3.40.50.1820 22 255 3.3E-43 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS09130 f648e789f0d3fe63cd30c254872696ab 208 Gene3D G3DSA:1.10.10.10 131 185 7.1E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09130 f648e789f0d3fe63cd30c254872696ab 208 SUPERFAMILY SSF46894 125 188 2.45E-13 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS09130 f648e789f0d3fe63cd30c254872696ab 208 SMART SM00421 128 185 2.6E-8 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS09130 f648e789f0d3fe63cd30c254872696ab 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 131 183 3.8E-14 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00155 5f8b5366a6a99e9dffc1c45aaa6ad940 212 Gene3D G3DSA:1.20.120.330 29 198 1.6E-78 T 25-04-2017 A4U88_RS00155 5f8b5366a6a99e9dffc1c45aaa6ad940 212 Pfam PF05068 Mannitol repressor 37 196 4.6E-63 T 25-04-2017 IPR007761 Mannitol repressor A4U88_RS00155 5f8b5366a6a99e9dffc1c45aaa6ad940 212 SUPERFAMILY SSF158668 35 197 2.75E-57 T 25-04-2017 A4U88_RS12825 a917606b46bab4b11cc115e34022d725 221 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 25-04-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS12825 a917606b46bab4b11cc115e34022d725 221 Gene3D G3DSA:3.20.20.70 1 214 1.8E-60 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS12825 a917606b46bab4b11cc115e34022d725 221 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 25-04-2017 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS12825 a917606b46bab4b11cc115e34022d725 221 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 1.6E-84 T 25-04-2017 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 A4U88_RS12825 a917606b46bab4b11cc115e34022d725 221 SUPERFAMILY SSF51569 1 216 5.55E-64 T 25-04-2017 A4U88_RS12825 a917606b46bab4b11cc115e34022d725 221 Pfam PF00923 Transaldolase 3 206 2.9E-43 T 25-04-2017 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336 A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 SUPERFAMILY SSF53822 66 332 6.28E-47 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 Gene3D G3DSA:1.10.260.40 9 60 1.0E-18 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 Gene3D G3DSA:3.40.50.2300 187 313 1.4E-20 T 25-04-2017 A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 SUPERFAMILY SSF47413 8 66 3.94E-14 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 Gene3D G3DSA:3.40.50.2300 61 186 5.5E-37 T 25-04-2017 A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 Pfam PF13407 Periplasmic binding protein domain 69 265 9.4E-22 T 25-04-2017 IPR025997 Periplasmic binding protein A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 55 1.6E-9 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS13100 3e5efb19a59668d8c3fc77893b8ab768 333 SMART SM00354 8 78 4.5E-18 T 25-04-2017 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 A4U88_RS05890 3e37bfc39dea8fb76d2d89d41760c623 318 Pfam PF08349 Protein of unknown function (DUF1722) 192 309 1.5E-43 T 25-04-2017 IPR013560 Domain of unknown function DUF1722 A4U88_RS05890 3e37bfc39dea8fb76d2d89d41760c623 318 Pfam PF04463 Protein of unknown function (DUF523) 7 149 6.1E-38 T 25-04-2017 IPR007553 Domain of unknown function DUF523 A4U88_RS05890 3e37bfc39dea8fb76d2d89d41760c623 318 PIRSF PIRSF037004 1 318 8.0E-133 T 25-04-2017 IPR017087 Uncharacterised conserved protein UCP037004 A4U88_RS05675 3f7803b6daf5645d65112aa06677addf 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 6.5E-25 T 25-04-2017 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 A4U88_RS05675 3f7803b6daf5645d65112aa06677addf 224 SUPERFAMILY SSF161098 14 209 3.27E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05675 3f7803b6daf5645d65112aa06677addf 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 2.0E-18 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS05675 3f7803b6daf5645d65112aa06677addf 224 Gene3D G3DSA:1.10.3720.10 13 222 5.3E-45 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07935 78fea7c6109874cff7ba55a4cff96ac8 110 Gene3D G3DSA:1.10.10.10 38 85 2.4E-7 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07160 5bd6f827cae70a8df17c72b904b40bd1 209 Pfam PF01613 Flavin reductase like domain 28 176 5.2E-16 T 25-04-2017 IPR002563 Flavin reductase like domain GO:0010181 A4U88_RS07160 5bd6f827cae70a8df17c72b904b40bd1 209 SMART SM00903 26 178 7.8E-16 T 25-04-2017 IPR002563 Flavin reductase like domain GO:0010181 A4U88_RS07160 5bd6f827cae70a8df17c72b904b40bd1 209 Gene3D G3DSA:2.30.110.10 15 190 1.5E-63 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS07160 5bd6f827cae70a8df17c72b904b40bd1 209 SUPERFAMILY SSF50475 5 193 1.82E-49 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS17685 6f4f600d1fd739bbd93a5fbb85bede93 293 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 64 279 6.5E-49 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS17685 6f4f600d1fd739bbd93a5fbb85bede93 293 SUPERFAMILY SSF53187 206 282 2.93E-52 T 25-04-2017 A4U88_RS17685 6f4f600d1fd739bbd93a5fbb85bede93 293 SUPERFAMILY SSF53187 62 158 2.93E-52 T 25-04-2017 A4U88_RS17685 6f4f600d1fd739bbd93a5fbb85bede93 293 SMART SM00646 124 279 3.9E-64 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS17685 6f4f600d1fd739bbd93a5fbb85bede93 293 Gene3D G3DSA:3.40.630.40 207 283 2.1E-56 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS17685 6f4f600d1fd739bbd93a5fbb85bede93 293 Gene3D G3DSA:3.40.630.40 62 159 2.1E-56 T 25-04-2017 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 Pfam PF01266 FAD dependent oxidoreductase 31 385 3.7E-34 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 SUPERFAMILY SSF51905 30 255 9.58E-36 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 SUPERFAMILY SSF51905 347 412 9.58E-36 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 163 178 1.6E-5 T 25-04-2017 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 31 53 1.6E-5 T 25-04-2017 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 Gene3D G3DSA:3.50.50.60 347 396 5.7E-38 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 Gene3D G3DSA:3.50.50.60 175 254 5.7E-38 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS02605 c8ec3b73a833da899430e8dc8fd2aff1 433 Gene3D G3DSA:3.50.50.60 22 121 5.7E-38 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS03805 38314b654e551360af2277dabe89f8d8 520 SUPERFAMILY SSF55931 4 515 3.66E-206 T 25-04-2017 A4U88_RS03805 38314b654e551360af2277dabe89f8d8 520 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 520 232.508 T 25-04-2017 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 A4U88_RS03805 38314b654e551360af2277dabe89f8d8 520 Pfam PF04262 Glutamate-cysteine ligase 10 380 1.4E-174 T 25-04-2017 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 A4U88_RS03805 38314b654e551360af2277dabe89f8d8 520 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 516 1.1E-257 T 25-04-2017 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 SUPERFAMILY SSF56349 107 297 2.85E-59 T 25-04-2017 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 Gene3D G3DSA:1.10.443.10 114 290 1.8E-59 T 25-04-2017 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 Gene3D G3DSA:1.10.150.130 7 101 7.5E-29 T 25-04-2017 IPR023109 Integrase/recombinase, N-terminal A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 299 7.9E-119 T 25-04-2017 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 64.546 T 25-04-2017 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 58.716 T 25-04-2017 IPR023009 Tyrosine recombinase XerC/XerD A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 2.2E-24 T 25-04-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 SUPERFAMILY SSF47823 5 101 3.34E-36 T 25-04-2017 IPR010998 Integrase, Lambda-type, N-terminal A4U88_RS19855 e8c7d92454bc299ae0b10e88b29e992d 299 Pfam PF00589 Phage integrase family 114 285 1.7E-55 T 25-04-2017 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 A4U88_RS09270 13486ca64611233a939c8355f1b966da 125 SUPERFAMILY SSF46785 19 123 1.59E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09270 13486ca64611233a939c8355f1b966da 125 Pfam PF01638 HxlR-like helix-turn-helix 31 120 6.1E-26 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS09270 13486ca64611233a939c8355f1b966da 125 Gene3D G3DSA:1.10.10.10 15 121 3.8E-37 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08770 eaa9dd90eaa0b4c18b7a88ce8da16b41 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 9.3E-14 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS08770 eaa9dd90eaa0b4c18b7a88ce8da16b41 100 SUPERFAMILY SSF54909 1 91 5.78E-28 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS08770 eaa9dd90eaa0b4c18b7a88ce8da16b41 100 Gene3D G3DSA:3.30.70.900 1 91 7.2E-28 T 25-04-2017 A4U88_RS16880 e19c7c65364a2e6db3a25be68d71382e 404 Gene3D G3DSA:3.40.640.10 51 279 4.6E-69 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS16880 e19c7c65364a2e6db3a25be68d71382e 404 Pfam PF00155 Aminotransferase class I and II 58 388 1.4E-48 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS16880 e19c7c65364a2e6db3a25be68d71382e 404 Gene3D G3DSA:3.90.1150.10 280 403 3.0E-41 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS16880 e19c7c65364a2e6db3a25be68d71382e 404 SUPERFAMILY SSF53383 7 402 8.16E-97 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS23190 e65f706e4e578070f6fa30803b13a9d4 134 Gene3D G3DSA:3.10.400.10 7 133 1.5E-51 T 25-04-2017 A4U88_RS23190 e65f706e4e578070f6fa30803b13a9d4 134 PIRSF PIRSF021320 1 134 1.3E-44 T 25-04-2017 IPR009326 Protein of unknown function DUF984 A4U88_RS23190 e65f706e4e578070f6fa30803b13a9d4 134 Pfam PF04266 ASCH domain 25 131 2.5E-21 T 25-04-2017 IPR007374 ASCH domain A4U88_RS23190 e65f706e4e578070f6fa30803b13a9d4 134 SUPERFAMILY SSF88697 9 132 8.7E-45 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS23190 e65f706e4e578070f6fa30803b13a9d4 134 SMART SM01022 16 132 4.5E-41 T 25-04-2017 IPR007374 ASCH domain A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 197 213 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 SUPERFAMILY SSF52283 4 109 3.19E-17 T 25-04-2017 A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 Gene3D G3DSA:3.40.50.720 115 259 7.8E-35 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 278 8.6E-17 T 25-04-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 245 9.2E-30 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 Gene3D G3DSA:3.40.50.720 2 114 9.4E-25 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 357 46.594 T 25-04-2017 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 Pfam PF11890 Domain of unknown function (DUF3410) 289 369 1.0E-30 T 25-04-2017 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 119 146 - T 25-04-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 A4U88_RS17040 b6cdc9263d89d7b8381ce3a96456155e 373 SUPERFAMILY SSF51735 91 246 1.34E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18945 70fd7c120657d4bece340fc50501892d 95 Gene3D G3DSA:1.10.1220.10 3 55 4.7E-8 T 25-04-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 A4U88_RS18945 70fd7c120657d4bece340fc50501892d 95 SUPERFAMILY SSF47598 1 56 5.68E-10 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS18945 70fd7c120657d4bece340fc50501892d 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 4 37 1.2E-4 T 25-04-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 A4U88_RS16320 8f03f7ec331440d4c1acc85dd26243c2 357 Pfam PF03601 Conserved hypothetical protein 698 24 335 1.2E-107 T 25-04-2017 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 A4U88_RS16320 8f03f7ec331440d4c1acc85dd26243c2 357 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 23 356 5.0E-129 T 25-04-2017 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 A4U88_RS08945 d934ec4714a36d94f160c8425c5abfa3 150 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 26 140 1.1E-16 T 25-04-2017 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-75105 A4U88_RS08945 d934ec4714a36d94f160c8425c5abfa3 150 Gene3D G3DSA:3.10.129.10 6 144 2.5E-54 T 25-04-2017 IPR029069 HotDog domain A4U88_RS08945 d934ec4714a36d94f160c8425c5abfa3 150 SUPERFAMILY SSF54637 4 140 8.9E-34 T 25-04-2017 IPR029069 HotDog domain A4U88_RS08945 d934ec4714a36d94f160c8425c5abfa3 150 Pfam PF03061 Thioesterase superfamily 56 132 2.1E-10 T 25-04-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 A4U88_RS13380 b6ddc983dcaea6dbd69ece2e3108e21d 229 SUPERFAMILY SSF53474 126 224 1.96E-28 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS13380 b6ddc983dcaea6dbd69ece2e3108e21d 229 SUPERFAMILY SSF53474 3 97 1.96E-28 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS13380 b6ddc983dcaea6dbd69ece2e3108e21d 229 Gene3D G3DSA:3.40.50.1820 3 225 6.4E-29 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS13380 b6ddc983dcaea6dbd69ece2e3108e21d 229 Pfam PF12697 Alpha/beta hydrolase family 7 219 1.2E-18 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS00690 7fe647f52d9f9ef95d78e249ea9050d8 157 Gene3D G3DSA:2.60.120.10 30 112 3.7E-7 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS00690 7fe647f52d9f9ef95d78e249ea9050d8 157 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 4 132 9.7E-45 T 25-04-2017 IPR027565 Cupin fold metalloprotein, WbuC family A4U88_RS00690 7fe647f52d9f9ef95d78e249ea9050d8 157 SUPERFAMILY SSF51182 28 120 5.94E-15 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS08300 1072cdad06b7d1b957994b0d98634bf3 587 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 2.6E-161 T 25-04-2017 IPR003776 YcaO-like domain A4U88_RS08300 1072cdad06b7d1b957994b0d98634bf3 587 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 1.3E-80 T 25-04-2017 IPR003776 YcaO-like domain A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 349 2.7E-118 T 25-04-2017 IPR028053 Membrane insertase YidC, N-terminal A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 Pfam PF14849 YidC periplasmic domain 61 340 1.3E-86 T 25-04-2017 IPR028053 Membrane insertase YidC, N-terminal A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 350 530 9.6E-70 T 25-04-2017 IPR028055 Membrane insertase YidC/Oxa1, C-terminal A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 459 481 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 248 263 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 496 519 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 66 87 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 321 341 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 158 178 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR00701 60kDa inner membrane protein signature 412 435 2.7E-95 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR01900 YidC translocation/secretion protein signature 465 480 1.3E-29 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR01900 YidC translocation/secretion protein signature 336 352 1.3E-29 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 PRINTS PR01900 YidC translocation/secretion protein signature 485 509 1.3E-29 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 532 26.825 T 25-04-2017 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 A4U88_RS24230 f28482289dd7b291e742f762c74b505f 545 Pfam PF02096 60Kd inner membrane protein 351 530 3.8E-61 T 25-04-2017 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 SUPERFAMILY SSF52540 4 66 1.78E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 SUPERFAMILY SSF52540 99 283 1.78E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 Gene3D G3DSA:3.40.50.300 2 282 5.2E-64 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 Pfam PF00005 ABC transporter 21 211 6.0E-26 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 SMART SM00382 30 261 4.6E-11 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 262 283 2.5E-10 T 25-04-2017 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal A4U88_RS16000 6ae34bcb8c7a0316e1ed79c28909ba85 291 ProSitePatterns PS00211 ABC transporters family signature. 184 198 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS02380 1552e7cbeec956c1bf52e94f29c80a9a 349 SUPERFAMILY SSF53756 31 271 4.08E-5 T 25-04-2017 A4U88_RS02380 1552e7cbeec956c1bf52e94f29c80a9a 349 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 69 310 9.0E-35 T 25-04-2017 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 A4U88_RS11755 95dc7b574f7164e2590e1da78800fdf8 458 SUPERFAMILY SSF53756 164 448 5.76E-17 T 25-04-2017 A4U88_RS08835 3fbcc76fe714fab8d4de703285379656 551 Gene3D G3DSA:3.40.605.10 11 270 3.1E-43 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS08835 3fbcc76fe714fab8d4de703285379656 551 Pfam PF00171 Aldehyde dehydrogenase family 40 464 1.5E-43 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS08835 3fbcc76fe714fab8d4de703285379656 551 Gene3D G3DSA:3.40.309.10 272 460 6.6E-53 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS08835 3fbcc76fe714fab8d4de703285379656 551 SUPERFAMILY SSF53720 33 525 2.36E-92 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 Gene3D G3DSA:3.40.50.1370 145 292 1.9E-53 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.118 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 9.4E-27 T 25-04-2017 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 SUPERFAMILY SSF53671 4 306 7.86E-99 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 1.6E-44 T 25-04-2017 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 Gene3D G3DSA:3.40.50.1370 7 144 8.5E-52 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 1.7E-120 T 25-04-2017 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 4.4E-25 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 4.4E-25 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 4.4E-25 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS02235 9c95c437cfb3b249b9b6bb7fda74cbe8 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 4.4E-25 T 25-04-2017 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 A4U88_RS10660 2822aa094020b40a5faa2e2c12f5dca2 138 Gene3D G3DSA:3.10.129.10 3 138 6.7E-49 T 25-04-2017 IPR029069 HotDog domain A4U88_RS10660 2822aa094020b40a5faa2e2c12f5dca2 138 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 136 1.1E-43 T 25-04-2017 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-75105 A4U88_RS10660 2822aa094020b40a5faa2e2c12f5dca2 138 Hamap MF_01936 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [menI]. 2 137 43.176 T 25-04-2017 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI GO:0009234|GO:0061522 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 A4U88_RS10660 2822aa094020b40a5faa2e2c12f5dca2 138 Pfam PF03061 Thioesterase superfamily 51 128 8.9E-15 T 25-04-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 A4U88_RS10660 2822aa094020b40a5faa2e2c12f5dca2 138 SUPERFAMILY SSF54637 21 138 3.07E-30 T 25-04-2017 IPR029069 HotDog domain A4U88_RS20815 40dad0eec90a53b4517c5711a6a7a5dc 201 SUPERFAMILY SSF53955 27 158 1.66E-28 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS20815 40dad0eec90a53b4517c5711a6a7a5dc 201 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 58 86 - T 25-04-2017 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 A4U88_RS20815 40dad0eec90a53b4517c5711a6a7a5dc 201 Pfam PF01464 Transglycosylase SLT domain 40 164 2.5E-27 T 25-04-2017 IPR008258 Transglycosylase SLT domain 1 A4U88_RS20815 40dad0eec90a53b4517c5711a6a7a5dc 201 Gene3D G3DSA:1.10.530.10 36 200 2.2E-33 T 25-04-2017 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 SUPERFAMILY SSF52540 1 206 1.59E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 12 201 3.3E-60 T 25-04-2017 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 Gene3D G3DSA:1.10.8.10 170 206 1.0E-5 T 25-04-2017 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 SUPERFAMILY SSF48019 209 324 1.04E-37 T 25-04-2017 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 Gene3D G3DSA:1.20.272.10 208 324 4.4E-47 T 25-04-2017 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 Pfam PF13177 DNA polymerase III, delta subunit 10 165 1.4E-42 T 25-04-2017 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 207 322 1.3E-46 T 25-04-2017 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 A4U88_RS09235 6b77057db6c04f3e807366a1c9550f84 335 Gene3D G3DSA:3.40.50.300 7 165 1.3E-46 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13820 6d04aa948e60c9c964f0534a77665c17 238 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 39 233 1.2E-42 T 25-04-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase A4U88_RS13820 6d04aa948e60c9c964f0534a77665c17 238 SUPERFAMILY SSF64438 32 213 3.11E-47 T 25-04-2017 IPR011324 Cytotoxic necrotizing factor-like, catalytic A4U88_RS13820 6d04aa948e60c9c964f0534a77665c17 238 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 40 194 2.0E-42 T 25-04-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase A4U88_RS13820 6d04aa948e60c9c964f0534a77665c17 238 Gene3D G3DSA:3.60.140.10 39 216 3.3E-54 T 25-04-2017 IPR003730 Multi-copper polyphenol oxidoreductase, laccase A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 Gene3D G3DSA:3.10.20.30 2 73 7.0E-29 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 Gene3D G3DSA:1.10.150.120 74 150 1.8E-28 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 SUPERFAMILY SSF54292 2 76 4.46E-25 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 5 62 1.4E-6 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 Pfam PF01799 [2Fe-2S] binding domain 72 144 2.9E-24 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS11395 7fdece1ff52ee10a1a282d2f3a3e342c 152 SUPERFAMILY SSF47741 83 151 2.62E-28 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS11675 29ce3179e87934c29e36e722c37698a7 399 Gene3D G3DSA:1.20.1250.20 215 388 2.7E-11 T 25-04-2017 A4U88_RS11675 29ce3179e87934c29e36e722c37698a7 399 Gene3D G3DSA:1.20.1250.20 15 192 2.6E-19 T 25-04-2017 A4U88_RS11675 29ce3179e87934c29e36e722c37698a7 399 Pfam PF07690 Major Facilitator Superfamily 20 319 9.4E-32 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS11675 29ce3179e87934c29e36e722c37698a7 399 SUPERFAMILY SSF103473 12 388 4.32E-47 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19320 dababc7e0c7adef7f1e61072ae1b51a3 110 PIRSF PIRSF006257 3 110 2.6E-39 T 25-04-2017 IPR007384 Protein of unknown function UCP006257 A4U88_RS19320 dababc7e0c7adef7f1e61072ae1b51a3 110 Gene3D G3DSA:1.20.1440.40 3 106 4.0E-39 T 25-04-2017 IPR023376 YqcC-like domain A4U88_RS19320 dababc7e0c7adef7f1e61072ae1b51a3 110 SUPERFAMILY SSF158452 3 108 8.37E-39 T 25-04-2017 IPR023376 YqcC-like domain A4U88_RS19320 dababc7e0c7adef7f1e61072ae1b51a3 110 Pfam PF04287 tRNA pseudouridine synthase C 8 104 1.1E-35 T 25-04-2017 IPR023376 YqcC-like domain A4U88_RS14100 823089edd154dce2f756edf9423b2e89 282 Pfam PF14305 TupA-like ATPgrasp 42 280 1.2E-49 T 25-04-2017 IPR029465 TupA-like ATPgrasp protein A4U88_RS19575 98c46d315bb6d4cb90c9b95927934323 158 Pfam PF03830 PTS system sorbose subfamily IIB component 4 148 4.5E-52 T 25-04-2017 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 A4U88_RS19575 98c46d315bb6d4cb90c9b95927934323 158 Gene3D G3DSA:3.40.35.10 3 157 5.5E-59 T 25-04-2017 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 A4U88_RS19575 98c46d315bb6d4cb90c9b95927934323 158 SUPERFAMILY SSF52728 3 153 1.2E-51 T 25-04-2017 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 A4U88_RS19575 98c46d315bb6d4cb90c9b95927934323 158 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 3 150 2.9E-65 T 25-04-2017 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 A4U88_RS06555 3df6b9f2b252c93c11f3c9452c6357c9 320 Gene3D G3DSA:3.40.50.1980 41 179 1.5E-9 T 25-04-2017 A4U88_RS06555 3df6b9f2b252c93c11f3c9452c6357c9 320 SUPERFAMILY SSF53807 41 315 2.35E-44 T 25-04-2017 A4U88_RS06555 3df6b9f2b252c93c11f3c9452c6357c9 320 Pfam PF01497 Periplasmic binding protein 52 288 6.0E-21 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS06555 3df6b9f2b252c93c11f3c9452c6357c9 320 Gene3D G3DSA:3.40.50.1980 184 315 6.8E-29 T 25-04-2017 A4U88_RS06655 0afad3000f6bf5d4920c14e1620fa983 211 Gene3D G3DSA:3.40.50.300 1 210 6.3E-31 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS06655 0afad3000f6bf5d4920c14e1620fa983 211 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 143 3.8E-16 T 25-04-2017 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain A4U88_RS06655 0afad3000f6bf5d4920c14e1620fa983 211 PIRSF PIRSF009320 1 211 6.2E-57 T 25-04-2017 A4U88_RS06655 0afad3000f6bf5d4920c14e1620fa983 211 SUPERFAMILY SSF52540 1 209 5.92E-33 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14385 7a5201052cc5ec54d7777842549ec27c 134 Pfam PF04347 Flagellar biosynthesis protein, FliO 45 128 2.3E-22 T 25-04-2017 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 A4U88_RS14385 7a5201052cc5ec54d7777842549ec27c 134 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 33 101 1.5E-19 T 25-04-2017 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 A4U88_RS20445 1afab83359725ac09b25239a95d2883f 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 24 106 3.3E-10 T 25-04-2017 IPR019114 Chaperone lipoprotein, PulS/OutS-like A4U88_RS20445 1afab83359725ac09b25239a95d2883f 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 15 113 2.0E-46 T 25-04-2017 A4U88_RS10380 fc72e888af747d973376c509404d044a 269 Pfam PF00702 haloacid dehalogenase-like hydrolase 4 198 3.2E-6 T 25-04-2017 A4U88_RS10380 fc72e888af747d973376c509404d044a 269 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 3 257 3.8E-111 T 25-04-2017 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 A4U88_RS10380 fc72e888af747d973376c509404d044a 269 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 35 203 6.6E-16 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS10380 fc72e888af747d973376c509404d044a 269 Gene3D G3DSA:1.10.150.240 23 98 2.1E-32 T 25-04-2017 IPR023198 Phosphoglycolate phosphatase, domain 2 A4U88_RS10380 fc72e888af747d973376c509404d044a 269 SUPERFAMILY SSF56784 4 259 3.27E-54 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS10380 fc72e888af747d973376c509404d044a 269 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 269 134.128 T 25-04-2017 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 A4U88_RS10380 fc72e888af747d973376c509404d044a 269 Gene3D G3DSA:3.40.50.1000 103 257 6.5E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS10380 fc72e888af747d973376c509404d044a 269 Gene3D G3DSA:3.40.50.1000 1 22 6.5E-37 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS04980 9457b75bb408c56a8cbf020377744391 137 PIRSF PIRSF003230 1 135 3.1E-21 T 25-04-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 A4U88_RS04980 9457b75bb408c56a8cbf020377744391 137 Pfam PF13279 Thioesterase-like superfamily 11 122 3.8E-17 T 25-04-2017 A4U88_RS04980 9457b75bb408c56a8cbf020377744391 137 Gene3D G3DSA:3.10.129.10 4 130 6.5E-42 T 25-04-2017 IPR029069 HotDog domain A4U88_RS04980 9457b75bb408c56a8cbf020377744391 137 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 118 8.9E-31 T 25-04-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 A4U88_RS04980 9457b75bb408c56a8cbf020377744391 137 SUPERFAMILY SSF54637 5 129 2.54E-36 T 25-04-2017 IPR029069 HotDog domain A4U88_RS15685 503bb3a51d00a073f3f70a5fb93e56ce 146 Pfam PF04657 Putative inner membrane exporter, YdcZ 3 140 7.3E-19 T 25-04-2017 IPR006750 Putative inner membrane exporter, YdcZ A4U88_RS19175 84ddfb020fe017e00c85b8500615bfc3 447 Pfam PF13520 Amino acid permease 7 420 2.3E-38 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS19175 84ddfb020fe017e00c85b8500615bfc3 447 PIRSF PIRSF006060 1 435 4.3E-48 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS19175 84ddfb020fe017e00c85b8500615bfc3 447 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 432 4.0E-136 T 25-04-2017 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 A4U88_RS12135 a1bc94c509c6cdf681e7490719324658 201 SUPERFAMILY SSF55469 1 197 5.63E-49 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS12135 a1bc94c509c6cdf681e7490719324658 201 Gene3D G3DSA:3.40.109.10 1 197 7.1E-52 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS12135 a1bc94c509c6cdf681e7490719324658 201 Pfam PF00881 Nitroreductase family 7 178 1.2E-30 T 25-04-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 A4U88_RS02440 976a872a6044ca22722f28d26a3303e0 573 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 254 7.6E-13 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS02440 976a872a6044ca22722f28d26a3303e0 573 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 388 570 1.4E-18 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS02440 976a872a6044ca22722f28d26a3303e0 573 Gene3D G3DSA:1.10.3720.10 367 571 1.9E-17 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS02440 976a872a6044ca22722f28d26a3303e0 573 Gene3D G3DSA:1.10.3720.10 57 255 1.9E-17 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS02440 976a872a6044ca22722f28d26a3303e0 573 SUPERFAMILY SSF161098 365 553 1.96E-18 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS02440 976a872a6044ca22722f28d26a3303e0 573 SUPERFAMILY SSF161098 57 254 6.93E-20 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12005 b02753df9908320f30a909176f0ffd65 206 Pfam PF13309 HTH domain 140 201 3.4E-17 T 25-04-2017 A4U88_RS12005 b02753df9908320f30a909176f0ffd65 206 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 14 119 5.0E-31 T 25-04-2017 IPR013559 YheO-like A4U88_RS12005 b02753df9908320f30a909176f0ffd65 206 Pfam PF08348 YheO-like PAS domain 8 113 6.0E-22 T 25-04-2017 IPR013559 YheO-like A4U88_RS12005 b02753df9908320f30a909176f0ffd65 206 Gene3D G3DSA:1.10.10.10 154 205 2.0E-4 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09110 48b828773ee721f33620c0c80bee6ca5 184 Pfam PF01292 Prokaryotic cytochrome b561 10 180 1.5E-24 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS09110 48b828773ee721f33620c0c80bee6ca5 184 SUPERFAMILY SSF81342 5 179 2.75E-34 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS09110 48b828773ee721f33620c0c80bee6ca5 184 Gene3D G3DSA:1.20.950.20 89 172 3.1E-4 T 25-04-2017 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.9E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 Pfam PF03466 LysR substrate binding domain 89 294 3.8E-38 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 SUPERFAMILY SSF53850 89 294 6.19E-34 T 25-04-2017 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-5 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 Gene3D G3DSA:1.10.10.10 1 80 4.4E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 Gene3D G3DSA:3.40.190.10 198 252 5.3E-11 T 25-04-2017 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 Gene3D G3DSA:3.40.190.10 81 197 2.6E-25 T 25-04-2017 A4U88_RS23320 743bc4e95df44a839f53670fdd46a8a2 296 SUPERFAMILY SSF46785 1 111 6.96E-24 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07685 c3c207767567a18859564e28ddefb1ad 373 SUPERFAMILY SSF53756 1 372 9.42E-52 T 25-04-2017 A4U88_RS07685 c3c207767567a18859564e28ddefb1ad 373 Gene3D G3DSA:3.40.50.2000 216 330 7.9E-10 T 25-04-2017 A4U88_RS07685 c3c207767567a18859564e28ddefb1ad 373 Pfam PF13439 Glycosyltransferase Family 4 15 208 1.2E-16 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS07685 c3c207767567a18859564e28ddefb1ad 373 Pfam PF00534 Glycosyl transferases group 1 220 331 7.0E-10 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS21755 e472cc4232bb41afab8da9f967a0e158 549 Pfam PF00999 Sodium/hydrogen exchanger family 8 421 4.3E-76 T 25-04-2017 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 A4U88_RS21755 e472cc4232bb41afab8da9f967a0e158 549 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 1.1E-206 T 25-04-2017 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.7E-30 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 Gene3D G3DSA:2.40.50.140 4 67 7.7E-30 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 SUPERFAMILY SSF50249 4 68 9.0E-25 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 PRINTS PR00050 Cold shock protein signature 6 21 7.0E-16 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 PRINTS PR00050 Cold shock protein signature 42 60 7.0E-16 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 PRINTS PR00050 Cold shock protein signature 27 36 7.0E-16 T 25-04-2017 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 PIRSF PIRSF002599 1 69 3.3E-24 T 25-04-2017 IPR012156 Cold shock, CspA GO:0003676 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 SMART SM00357 5 69 8.4E-28 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS08355 d15e4033dba6348027226eb36e1fac1e 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 25-04-2017 IPR019844 Cold-shock conserved site A4U88_RS17970 3bde52f1dc3fa0c6da3d65931e13855e 171 Gene3D G3DSA:1.20.120.20 34 160 5.7E-4 T 25-04-2017 A4U88_RS17970 3bde52f1dc3fa0c6da3d65931e13855e 171 SUPERFAMILY SSF58113 28 155 3.92E-6 T 25-04-2017 A4U88_RS05600 deb3e47049ac30aec11d027c12cf0a96 88 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 2 88 27.463 T 25-04-2017 IPR007454 Uncharacterised protein family UPF0250 A4U88_RS05600 deb3e47049ac30aec11d027c12cf0a96 88 Pfam PF04359 Protein of unknown function (DUF493) 8 88 7.8E-31 T 25-04-2017 IPR007454 Uncharacterised protein family UPF0250 A4U88_RS05600 deb3e47049ac30aec11d027c12cf0a96 88 SUPERFAMILY SSF117991 3 88 4.05E-32 T 25-04-2017 IPR027471 YbeD-like domain A4U88_RS05600 deb3e47049ac30aec11d027c12cf0a96 88 Gene3D G3DSA:3.30.70.1460 3 88 3.3E-38 T 25-04-2017 IPR027471 YbeD-like domain A4U88_RS06680 f9b8907b7501c32ad7bfbe17cf76872e 97 Gene3D G3DSA:3.30.70.900 1 90 1.6E-27 T 25-04-2017 A4U88_RS06680 f9b8907b7501c32ad7bfbe17cf76872e 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 2.4E-18 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS06680 f9b8907b7501c32ad7bfbe17cf76872e 97 SUPERFAMILY SSF54909 1 91 4.29E-24 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS06680 f9b8907b7501c32ad7bfbe17cf76872e 97 Hamap MF_02051 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [lsrG]. 1 96 38.156 T 25-04-2017 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase GO:0016853 A4U88_RS06750 737a9fad04afc5cf53817484740ed141 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 222 1.1E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06750 737a9fad04afc5cf53817484740ed141 222 SUPERFAMILY SSF161098 13 209 1.19E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06750 737a9fad04afc5cf53817484740ed141 222 Gene3D G3DSA:1.10.3720.10 12 221 5.5E-41 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS01550 67a8b6449b70d80470ba1ee32a190ecb 43 Pfam PF08085 Entericidin EcnA/B family 22 42 2.9E-9 T 25-04-2017 IPR012556 Entericidin A/B GO:0009636|GO:0016020 A4U88_RS12255 5dfb083dcfbca1f6fc67427b61d2156b 527 SUPERFAMILY SSF161098 284 518 8.22E-38 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12255 5dfb083dcfbca1f6fc67427b61d2156b 527 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 344 524 3.4E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12255 5dfb083dcfbca1f6fc67427b61d2156b 527 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 63 259 1.7E-6 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12255 5dfb083dcfbca1f6fc67427b61d2156b 527 Gene3D G3DSA:1.10.3720.10 292 523 2.4E-30 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12255 5dfb083dcfbca1f6fc67427b61d2156b 527 Gene3D G3DSA:1.10.3720.10 29 262 1.2E-33 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS12255 5dfb083dcfbca1f6fc67427b61d2156b 527 SUPERFAMILY SSF161098 25 253 1.31E-35 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10410 109c85c25256befd5e0eea3eca2a350e 289 Gene3D G3DSA:3.30.200.20 35 91 4.3E-4 T 25-04-2017 A4U88_RS10410 109c85c25256befd5e0eea3eca2a350e 289 SUPERFAMILY SSF56112 3 286 2.58E-38 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS10410 109c85c25256befd5e0eea3eca2a350e 289 Gene3D G3DSA:3.90.1200.10 97 255 2.6E-10 T 25-04-2017 A4U88_RS10410 109c85c25256befd5e0eea3eca2a350e 289 Pfam PF03881 Fructosamine kinase 1 285 2.8E-115 T 25-04-2017 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 A4U88_RS10410 109c85c25256befd5e0eea3eca2a350e 289 PIRSF PIRSF006221 1 287 2.9E-90 T 25-04-2017 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 SMART SM00967 4 80 1.9E-21 T 25-04-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 Pfam PF00588 SpoU rRNA Methylase family 96 236 3.6E-40 T 25-04-2017 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 76 2.0E-19 T 25-04-2017 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.412 T 25-04-2017 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 Gene3D G3DSA:3.30.1330.30 1 75 4.2E-27 T 25-04-2017 IPR029064 50S ribosomal protein L30e-like A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 SUPERFAMILY SSF55315 2 75 2.24E-20 T 25-04-2017 IPR029064 50S ribosomal protein L30e-like A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 8.7E-92 T 25-04-2017 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 SUPERFAMILY SSF75217 69 243 2.03E-49 T 25-04-2017 IPR029028 Alpha/beta knot methyltransferases A4U88_RS01700 ba4134d3615afc45cf11144bc77efe33 243 Gene3D G3DSA:3.40.1280.10 93 242 2.0E-54 T 25-04-2017 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 23.333 T 25-04-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 SUPERFAMILY SSF50249 5 75 9.25E-15 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Pfam PF02565 Recombination protein O C terminal 85 226 2.0E-23 T 25-04-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Pfam PF11967 Recombination protein O N terminal 5 76 7.8E-23 T 25-04-2017 IPR022572 DNA replication/recombination mediator RecO, N-terminal A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 TIGRFAM TIGR00613 reco: DNA repair protein RecO 6 230 2.5E-37 T 25-04-2017 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 SUPERFAMILY SSF57863 85 175 5.49E-10 T 25-04-2017 A4U88_RS18625 496b4b6e5a1a43aa6f9a5e811d1e29d5 243 Gene3D G3DSA:2.40.50.140 6 74 5.0E-8 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS02370 7aefd63da538e0d124ff89983172d061 354 Gene3D G3DSA:3.90.25.10 192 340 1.5E-56 T 25-04-2017 A4U88_RS02370 7aefd63da538e0d124ff89983172d061 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 1.8E-98 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02370 7aefd63da538e0d124ff89983172d061 354 SUPERFAMILY SSF51735 1 345 7.88E-96 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02370 7aefd63da538e0d124ff89983172d061 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 339 2.5E-158 T 25-04-2017 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 A4U88_RS02370 7aefd63da538e0d124ff89983172d061 354 Gene3D G3DSA:3.40.50.720 1 191 2.8E-65 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15440 42deda7469411f311a416f1ffaa82355 172 Pfam PF00419 Fimbrial protein 22 171 3.3E-18 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS15440 42deda7469411f311a416f1ffaa82355 172 SUPERFAMILY SSF49401 21 172 1.34E-33 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS15440 42deda7469411f311a416f1ffaa82355 172 Gene3D G3DSA:2.60.40.1090 20 172 1.8E-38 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS17760 c8fb54549acc31e3e18a164f023293d6 197 Pfam PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading 28 193 2.3E-40 T 25-04-2017 IPR004302 Chitin-binding protein, N-terminal A4U88_RS17760 c8fb54549acc31e3e18a164f023293d6 197 Gene3D G3DSA:2.70.50.50 28 196 5.0E-69 T 25-04-2017 A4U88_RS17760 c8fb54549acc31e3e18a164f023293d6 197 SUPERFAMILY SSF81296 28 196 6.44E-66 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 Gene3D G3DSA:3.60.20.10 2 191 4.2E-67 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 SUPERFAMILY SSF56235 1 196 3.43E-57 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 Gene3D G3DSA:3.40.50.620 192 510 3.6E-119 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 Pfam PF00733 Asparagine synthase 212 511 1.8E-98 T 25-04-2017 IPR001962 Asparagine synthase GO:0004066|GO:0006529 A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 Pfam PF13537 Glutamine amidotransferase domain 48 166 7.1E-42 T 25-04-2017 IPR017932 Glutamine amidotransferase type 2 domain A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 372 1.0E-124 T 25-04-2017 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 A4U88_RS05760 78c5b8e9eb57599ae47ee98125765bff 554 SUPERFAMILY SSF52402 209 479 6.41E-76 T 25-04-2017 A4U88_RS13310 399cfa0b79b6653e99788059d6e23078 183 PIRSF PIRSF000232 1 182 9.9E-64 T 25-04-2017 IPR026021 Putative NAD(P)H nitroreductase YdjA-like A4U88_RS13310 399cfa0b79b6653e99788059d6e23078 183 Gene3D G3DSA:3.40.109.10 1 170 4.0E-40 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS13310 399cfa0b79b6653e99788059d6e23078 183 Pfam PF00881 Nitroreductase family 8 161 8.5E-21 T 25-04-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 A4U88_RS13310 399cfa0b79b6653e99788059d6e23078 183 SUPERFAMILY SSF55469 1 174 3.14E-38 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS18805 18ef818067a8b6c9dd0da2e5a6357370 213 Pfam PF06551 Protein of unknown function (DUF1120) 30 98 1.3E-7 T 25-04-2017 IPR010546 Protein of unknown function DUF1120 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Gene3D G3DSA:3.40.710.10 385 796 3.0E-106 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Pfam PF00912 Transglycosylase 212 383 3.8E-55 T 25-04-2017 IPR001264 Glycosyl transferase, family 51 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 PIRSF PIRSF002799 42 831 0.0 T 25-04-2017 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Pfam PF00905 Penicillin binding protein transpeptidase domain 476 724 1.6E-22 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Gene3D G3DSA:1.10.3810.10 208 384 1.1E-62 T 25-04-2017 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 SUPERFAMILY SSF56601 415 788 4.0E-108 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 SUPERFAMILY SSF56601 365 387 4.0E-108 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 71 797 0.0 T 25-04-2017 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 82 7.0E-31 T 25-04-2017 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Gene3D G3DSA:1.20.5.100 58 99 2.1E-22 T 25-04-2017 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Pfam PF14814 Bifunctional transglycosylase second domain 116 200 2.9E-30 T 25-04-2017 IPR028166 Bifunctional transglycosylase second domain KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 Gene3D G3DSA:3.30.2060.10 114 203 2.1E-33 T 25-04-2017 A4U88_RS20345 777176ef8a4dd9952c78fcb5a42a83ec 831 SUPERFAMILY SSF53955 199 406 2.73E-66 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS12570 5574d3cf14003c7bb46ad8d74f585b54 91 Pfam PF06392 Acid shock protein repeat 63 81 2.8E-4 T 25-04-2017 IPR009435 Acid shock GO:0010447|GO:0042597 A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 259 3.6E-65 T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 Gene3D G3DSA:3.30.1240.10 83 176 2.6E-23 T 25-04-2017 A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 25-04-2017 IPR000150 Cof protein GO:0016787 A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 SUPERFAMILY SSF56784 1 265 1.48E-69 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 Gene3D G3DSA:3.40.50.1000 177 265 1.4E-54 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 Gene3D G3DSA:3.40.50.1000 1 72 1.4E-54 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 25-04-2017 A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 1.9E-62 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00740 bdb577dfc4ae722c759975f0f3065699 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 1.1E-25 T 25-04-2017 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 Gene3D G3DSA:1.20.1250.20 195 374 3.1E-8 T 25-04-2017 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 Pfam PF07690 Major Facilitator Superfamily 5 348 6.6E-34 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 SUPERFAMILY SSF103473 2 373 9.81E-48 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 PRINTS PR01036 Tetracycline resistance protein TetB signature 3 27 9.6E-5 T 25-04-2017 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 PRINTS PR01036 Tetracycline resistance protein TetB signature 94 114 9.6E-5 T 25-04-2017 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 PRINTS PR01036 Tetracycline resistance protein TetB signature 149 173 9.6E-5 T 25-04-2017 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 PRINTS PR01036 Tetracycline resistance protein TetB signature 269 293 9.6E-5 T 25-04-2017 A4U88_RS01045 8911722ba09039cd9c280dc61db2aba8 379 Gene3D G3DSA:1.20.1250.20 3 178 5.9E-27 T 25-04-2017 A4U88_RS02825 3a423cf1f3f4714c46b25a145cf40220 330 Pfam PF00248 Aldo/keto reductase family 16 308 2.0E-82 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS02825 3a423cf1f3f4714c46b25a145cf40220 330 SUPERFAMILY SSF51430 1 310 3.67E-103 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS02825 3a423cf1f3f4714c46b25a145cf40220 330 Gene3D G3DSA:3.20.20.100 1 324 2.8E-119 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS21635 75a57972fd49033e1c959da50dce427d 333 SUPERFAMILY SSF56524 75 329 1.57E-93 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS21635 75a57972fd49033e1c959da50dce427d 333 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 1 333 61.124 T 25-04-2017 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 A4U88_RS21635 75a57972fd49033e1c959da50dce427d 333 Gene3D G3DSA:3.90.420.10 66 331 2.9E-77 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS21635 75a57972fd49033e1c959da50dce427d 333 Pfam PF00174 Oxidoreductase molybdopterin binding domain 107 266 2.2E-28 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 SUPERFAMILY SSF51735 8 245 3.86E-83 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 2.7E-5 T 25-04-2017 A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 2.8E-64 T 25-04-2017 A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.0E-41 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 Gene3D G3DSA:3.40.50.720 8 245 2.0E-83 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 4.6E-13 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 4.6E-13 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS18955 e14e8ec88b748083c3ae9155bad033bb 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 4.6E-13 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.998 T 25-04-2017 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 SUPERFAMILY SSF52540 613 911 3.29E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:1.20.1580.10 91 129 8.5E-55 T 25-04-2017 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:1.20.1580.10 407 477 8.5E-55 T 25-04-2017 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:1.20.1580.10 251 284 8.5E-55 T 25-04-2017 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:3.40.50.300 478 597 2.9E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:3.40.50.300 821 938 2.8E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:3.40.50.300 2 51 2.9E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:3.40.50.300 611 692 2.8E-57 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Pfam PF00005 ABC transporter 806 860 1.4E-5 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 SUPERFAMILY SSF52540 1 204 3.28E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 SUPERFAMILY SSF52540 445 569 3.28E-45 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 925 0.0 T 25-04-2017 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:1.20.1580.10 694 820 2.6E-55 T 25-04-2017 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:3.30.1490.20 130 153 3.3E-28 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:3.30.1490.20 200 248 3.3E-28 T 25-04-2017 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 A4U88_RS21810 e314b38349c8699bf91e32eff0167bc3 942 Gene3D G3DSA:1.10.8.280 286 406 2.7E-43 T 25-04-2017 A4U88_RS04015 4f5b5d15e2a90ecde2a2fc26ff6cf37f 63 Pfam PF13318 Protein of unknown function (DUF4089) 12 61 5.0E-17 T 25-04-2017 IPR025148 Protein of unknown function DUF4089 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 Gene3D G3DSA:3.40.190.10 33 156 2.1E-32 T 25-04-2017 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 Gene3D G3DSA:3.40.190.10 157 323 8.2E-54 T 25-04-2017 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 SUPERFAMILY SSF53850 30 396 7.76E-95 T 25-04-2017 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 71 89 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 172 191 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 152 171 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 37 55 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 358 377 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 234 253 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 131 150 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 PRINTS PR00181 Maltose binding protein signature 300 321 1.3E-90 T 25-04-2017 IPR006060 Maltose binding protein GO:0005363|GO:0015768 A4U88_RS21970 a3ab8a1093b84462185afadcaad65817 397 Pfam PF13416 Bacterial extracellular solute-binding protein 51 345 5.2E-42 T 25-04-2017 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 Pfam PF00773 RNB domain 260 587 4.0E-105 T 25-04-2017 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SUPERFAMILY SSF50249 222 643 3.08E-139 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 3.7E-273 T 25-04-2017 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 Gene3D G3DSA:2.40.50.140 645 732 1.2E-20 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SUPERFAMILY SSF50249 138 236 5.71E-15 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SUPERFAMILY SSF50249 644 739 2.6E-21 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SMART SM00316 643 726 2.2E-12 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SMART SM00316 80 142 38.0 T 25-04-2017 IPR022967 RNA-binding domain, S1 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 57.197 T 25-04-2017 IPR011805 Ribonuclease R GO:0003723|GO:0004518 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SMART SM00955 260 588 2.9E-178 T 25-04-2017 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 Pfam PF00575 S1 RNA binding domain 643 724 4.6E-16 T 25-04-2017 IPR003029 S1 domain GO:0003676 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SMART SM00357 86 145 6.2E-15 T 25-04-2017 IPR011129 Cold shock protein GO:0003676 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 Pfam PF08461 Ribonuclease R winged-helix domain 22 85 3.5E-15 T 25-04-2017 IPR013668 Ribonuclease R winged-helix domain A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 Pfam PF08206 Ribonuclease B OB domain 87 144 3.2E-21 T 25-04-2017 IPR013223 Ribonuclease B, N-terminal OB domain A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 1.4E-277 T 25-04-2017 IPR011805 Ribonuclease R GO:0003723|GO:0004518 A4U88_RS01695 89807801a6175b1ad2feb9054beec335 824 SUPERFAMILY SSF50249 67 145 2.46E-17 T 25-04-2017 IPR012340 Nucleic acid-binding, OB-fold A4U88_RS09675 1d350405d13e2b6f4dc012d344894d39 509 SUPERFAMILY SSF52091 390 474 5.49E-15 T 25-04-2017 IPR002645 STAS domain A4U88_RS09675 1d350405d13e2b6f4dc012d344894d39 509 Gene3D G3DSA:3.30.750.24 391 474 1.7E-13 T 25-04-2017 IPR002645 STAS domain A4U88_RS09675 1d350405d13e2b6f4dc012d344894d39 509 Pfam PF01740 STAS domain 390 478 4.2E-9 T 25-04-2017 IPR002645 STAS domain A4U88_RS09675 1d350405d13e2b6f4dc012d344894d39 509 Pfam PF00916 Sulfate permease family 14 140 6.3E-21 T 25-04-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 A4U88_RS09675 1d350405d13e2b6f4dc012d344894d39 509 Pfam PF00916 Sulfate permease family 162 352 2.6E-28 T 25-04-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 A4U88_RS08920 85139baa01bfd5b4db867434cffdee44 99 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.2E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08920 85139baa01bfd5b4db867434cffdee44 99 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.2E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08920 85139baa01bfd5b4db867434cffdee44 99 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.2E-8 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08920 85139baa01bfd5b4db867434cffdee44 99 SUPERFAMILY SSF46785 4 85 1.3E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08920 85139baa01bfd5b4db867434cffdee44 99 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.8E-21 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS08920 85139baa01bfd5b4db867434cffdee44 99 Gene3D G3DSA:1.10.10.10 5 82 1.6E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 4 327 3.6E-123 T 25-04-2017 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 Reactome: R-HSA-389661 A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 Gene3D G3DSA:3.90.1550.10 1 246 1.9E-82 T 25-04-2017 A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 SUPERFAMILY SSF82649 247 336 3.71E-24 T 25-04-2017 A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 SUPERFAMILY SSF55681 4 246 1.82E-77 T 25-04-2017 A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 Hamap MF_01602 Lipoate-protein ligase A [lplA]. 1 337 56.787 T 25-04-2017 IPR023741 Lipoate-protein ligase A GO:0016979|GO:0018055 A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 Gene3D G3DSA:3.30.390.50 247 332 1.3E-13 T 25-04-2017 A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 249 332 1.5E-17 T 25-04-2017 IPR019491 Lipoate protein ligase, C-terminal A4U88_RS10575 95f096482803d03a413e39ccd464ee6b 337 Pfam PF03099 Biotin/lipoate A/B protein ligase family 49 157 1.1E-7 T 25-04-2017 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 420 49.222 T 25-04-2017 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 SUPERFAMILY SSF51905 79 102 1.14E-30 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 SUPERFAMILY SSF51905 254 419 1.14E-30 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 SUPERFAMILY SSF51905 132 200 1.14E-30 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 SUPERFAMILY SSF51905 1 35 1.14E-30 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 PIRSF PIRSF000141 1 422 8.5E-168 T 25-04-2017 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 Gene3D G3DSA:3.50.50.60 254 419 4.8E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 Gene3D G3DSA:3.50.50.60 139 179 4.8E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 Gene3D G3DSA:3.50.50.60 2 62 4.8E-26 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 416 1.3E-170 T 25-04-2017 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 A4U88_RS00765 27c42d4f755539ae40f6e5fb01abf0c5 422 Pfam PF00890 FAD binding domain 4 404 5.5E-66 T 25-04-2017 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 A4U88_RS20875 a9d8b003f56e6c24eb4c50d28c9372e7 102 SUPERFAMILY SSF54909 1 97 1.82E-29 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS20875 a9d8b003f56e6c24eb4c50d28c9372e7 102 Gene3D G3DSA:3.30.70.900 1 99 4.7E-34 T 25-04-2017 A4U88_RS20875 a9d8b003f56e6c24eb4c50d28c9372e7 102 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 84 1.2E-18 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS14155 4c0ce7a99d4bbb4140db4bde44ec5e92 222 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 81 98 7.7E-17 T 25-04-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial A4U88_RS14155 4c0ce7a99d4bbb4140db4bde44ec5e92 222 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 149 160 7.7E-17 T 25-04-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial A4U88_RS14155 4c0ce7a99d4bbb4140db4bde44ec5e92 222 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 161 176 7.7E-17 T 25-04-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial A4U88_RS14155 4c0ce7a99d4bbb4140db4bde44ec5e92 222 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 138 148 7.7E-17 T 25-04-2017 IPR014032 Peptidase A24A, prepilin type IV, bacterial A4U88_RS14155 4c0ce7a99d4bbb4140db4bde44ec5e92 222 Pfam PF01478 Type IV leader peptidase family 75 180 6.7E-24 T 25-04-2017 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 A4U88_RS05510 9cfa702b8aaf506d0664222ae0bf9b16 482 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 301 467 1.8E-49 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS05510 9cfa702b8aaf506d0664222ae0bf9b16 482 Gene3D G3DSA:3.30.70.270 306 469 2.2E-49 T 25-04-2017 A4U88_RS05510 9cfa702b8aaf506d0664222ae0bf9b16 482 SUPERFAMILY SSF55073 310 468 9.42E-42 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS05510 9cfa702b8aaf506d0664222ae0bf9b16 482 Pfam PF00990 Diguanylate cyclase, GGDEF domain 305 464 3.0E-43 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS05510 9cfa702b8aaf506d0664222ae0bf9b16 482 SMART SM00267 294 468 1.1E-54 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS17105 4f81f1a7e97e866fdc5b69108a4b706a 238 Gene3D G3DSA:3.40.30.10 66 234 5.6E-43 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17105 4f81f1a7e97e866fdc5b69108a4b706a 238 SUPERFAMILY SSF52833 64 229 5.2E-43 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17105 4f81f1a7e97e866fdc5b69108a4b706a 238 Pfam PF13462 Thioredoxin 75 229 3.2E-24 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17105 4f81f1a7e97e866fdc5b69108a4b706a 238 ProSitePatterns PS00194 Thioredoxin family active site. 89 107 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS01225 8b5394a73e160f16ea6c7ea73a60540f 647 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 149 601 6.2E-224 T 25-04-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 A4U88_RS01225 8b5394a73e160f16ea6c7ea73a60540f 647 Pfam PF01964 Radical SAM ThiC family 150 598 1.4E-200 T 25-04-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 A4U88_RS01225 8b5394a73e160f16ea6c7ea73a60540f 647 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 149 603 56.425 T 25-04-2017 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 A4U88_RS01225 8b5394a73e160f16ea6c7ea73a60540f 647 Pfam PF13667 ThiC-associated domain 29 109 5.0E-32 T 25-04-2017 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 A4U88_RS08475 f908ea6d473aa9b6c31e80d22e6f7ca4 192 Gene3D G3DSA:3.40.50.360 1 172 2.2E-33 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08475 f908ea6d473aa9b6c31e80d22e6f7ca4 192 SUPERFAMILY SSF52218 1 168 2.64E-33 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08475 f908ea6d473aa9b6c31e80d22e6f7ca4 192 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 2 169 2.8E-72 T 25-04-2017 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 A4U88_RS08475 f908ea6d473aa9b6c31e80d22e6f7ca4 192 Pfam PF03358 NADPH-dependent FMN reductase 1 141 4.8E-33 T 25-04-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 A4U88_RS00680 1a63cc4924e256b00511f349d51be2e0 238 Pfam PF00702 haloacid dehalogenase-like hydrolase 12 201 5.4E-17 T 25-04-2017 A4U88_RS00680 1a63cc4924e256b00511f349d51be2e0 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 127 201 5.4E-12 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS00680 1a63cc4924e256b00511f349d51be2e0 238 SUPERFAMILY SSF56784 12 238 8.27E-42 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS00680 1a63cc4924e256b00511f349d51be2e0 238 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 118 207 4.5E-9 T 25-04-2017 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 A4U88_RS00680 1a63cc4924e256b00511f349d51be2e0 238 Gene3D G3DSA:3.40.50.1000 11 235 3.5E-33 T 25-04-2017 IPR023214 HAD-like domain A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 37.886 T 25-04-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 283 1.3E-110 T 25-04-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 Gene3D G3DSA:3.40.1010.10 13 121 4.1E-18 T 25-04-2017 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 Gene3D G3DSA:3.30.950.10 122 236 1.6E-40 T 25-04-2017 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 5.9E-27 T 25-04-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 25-04-2017 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 PIRSF PIRSF005917 1 287 5.7E-107 T 25-04-2017 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 A4U88_RS21230 5fb80556301257031fc7635ab65ba6ba 287 SUPERFAMILY SSF53790 13 232 2.88E-82 T 25-04-2017 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 A4U88_RS16530 40941573342a4ab61230a5f703b61a9b 1195 Pfam PF13550 Putative phage tail protein 342 495 3.3E-19 T 25-04-2017 IPR032876 Tip attachment protein J A4U88_RS16530 40941573342a4ab61230a5f703b61a9b 1195 Pfam PF12421 Fibronectin type III protein 1015 1105 3.4E-8 T 25-04-2017 IPR021034 Domain of unknown function, DUF3672 A4U88_RS16530 40941573342a4ab61230a5f703b61a9b 1195 Pfam PF09327 Domain of unknown function (DUF1983) 903 982 6.5E-22 T 25-04-2017 IPR015406 Domain of unknown function DUF1983 A4U88_RS16530 40941573342a4ab61230a5f703b61a9b 1195 SUPERFAMILY SSF49265 620 705 4.19E-5 T 25-04-2017 IPR003961 Fibronectin type III GO:0005515 A4U88_RS13570 10604d94e9a6ce2d40707a30982e59b4 314 SUPERFAMILY SSF53807 29 314 3.19E-76 T 25-04-2017 A4U88_RS13570 10604d94e9a6ce2d40707a30982e59b4 314 Gene3D G3DSA:3.40.50.1980 203 314 5.3E-30 T 25-04-2017 A4U88_RS13570 10604d94e9a6ce2d40707a30982e59b4 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 30 308 2.9E-56 T 25-04-2017 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 A4U88_RS13570 10604d94e9a6ce2d40707a30982e59b4 314 Gene3D G3DSA:3.40.50.1980 21 202 1.0E-42 T 25-04-2017 A4U88_RS18995 cdc6688c22798873b5a04cf5ec5d5e34 333 Gene3D G3DSA:3.40.190.10 265 331 2.3E-56 T 25-04-2017 A4U88_RS18995 cdc6688c22798873b5a04cf5ec5d5e34 333 Gene3D G3DSA:3.40.190.10 24 113 2.3E-56 T 25-04-2017 A4U88_RS18995 cdc6688c22798873b5a04cf5ec5d5e34 333 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 34 314 4.3E-55 T 25-04-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 A4U88_RS18995 cdc6688c22798873b5a04cf5ec5d5e34 333 SUPERFAMILY SSF53850 25 330 1.9E-93 T 25-04-2017 A4U88_RS18995 cdc6688c22798873b5a04cf5ec5d5e34 333 Gene3D G3DSA:3.40.190.100 114 264 3.5E-56 T 25-04-2017 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 SUPERFAMILY SSF48295 5 105 2.51E-30 T 25-04-2017 IPR010921 Trp repressor/replication initiator GO:0043565 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 10 101 1.0E-33 T 25-04-2017 IPR013335 Trp repressor, bacterial GO:0006355 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 TIGRFAM TIGR01321 TrpR: trp operon repressor 12 104 7.1E-37 T 25-04-2017 IPR013335 Trp repressor, bacterial GO:0006355 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 Gene3D G3DSA:1.10.1270.10 10 107 8.7E-46 T 25-04-2017 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 Pfam PF01371 Trp repressor protein 17 103 1.3E-30 T 25-04-2017 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 PIRSF PIRSF003196 10 108 4.7E-41 T 25-04-2017 IPR013335 Trp repressor, bacterial GO:0006355 A4U88_RS02965 4c1573bd95fde74959bd7400cfcc0ed2 109 Hamap MF_00475 Trp operon repressor [trpR]. 15 108 23.998 T 25-04-2017 IPR013335 Trp repressor, bacterial GO:0006355 A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 66 158 7.9E-17 T 25-04-2017 IPR008638 Filamentous haemagglutinin, N-terminal A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF13332 Haemagluttinin repeat 1108 1204 6.5E-11 T 25-04-2017 IPR025157 Haemagluttinin repeat A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF13332 Haemagluttinin repeat 1211 1372 2.1E-27 T 25-04-2017 IPR025157 Haemagluttinin repeat A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF13332 Haemagluttinin repeat 805 890 3.5E-5 T 25-04-2017 IPR025157 Haemagluttinin repeat A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF13332 Haemagluttinin repeat 924 1086 2.1E-18 T 25-04-2017 IPR025157 Haemagluttinin repeat A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF13332 Haemagluttinin repeat 623 783 6.3E-12 T 25-04-2017 IPR025157 Haemagluttinin repeat A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF13332 Haemagluttinin repeat 394 454 7.2E-6 T 25-04-2017 IPR025157 Haemagluttinin repeat A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Pfam PF05860 haemagglutination activity domain 32 166 5.5E-30 T 25-04-2017 IPR008638 Filamentous haemagglutinin, N-terminal A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Gene3D G3DSA:2.160.20.10 352 364 6.8E-69 T 25-04-2017 IPR012334 Pectin lyase fold A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 Gene3D G3DSA:2.160.20.10 36 296 6.8E-69 T 25-04-2017 IPR012334 Pectin lyase fold A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 SUPERFAMILY SSF51126 40 298 1.19E-52 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 SUPERFAMILY SSF51126 360 378 1.19E-52 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS22020 983f504c0bdb33b630f9735051536581 1607 SMART SM00912 48 168 1.1E-43 T 25-04-2017 IPR008638 Filamentous haemagglutinin, N-terminal A4U88_RS14770 416270d1a4742fce04ae5fa083d51937 280 Pfam PF03301 Tryptophan 2,3-dioxygenase 204 276 2.5E-21 T 25-04-2017 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 A4U88_RS14770 416270d1a4742fce04ae5fa083d51937 280 Pfam PF03301 Tryptophan 2,3-dioxygenase 11 141 2.9E-41 T 25-04-2017 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 A4U88_RS14770 416270d1a4742fce04ae5fa083d51937 280 Hamap MF_01972 Tryptophan 2,3-dioxygenase [kynA]. 13 278 39.569 T 25-04-2017 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 A4U88_RS14770 416270d1a4742fce04ae5fa083d51937 280 SUPERFAMILY SSF140959 19 278 1.31E-101 T 25-04-2017 A4U88_RS14770 416270d1a4742fce04ae5fa083d51937 280 TIGRFAM TIGR03036 trp_2_3_diox: tryptophan 2,3-dioxygenase 13 278 5.2E-124 T 25-04-2017 IPR017485 Tryptophan 2,3-dioxygenase, bacterial GO:0004833|GO:0019441 KEGG: 00380+1.13.11.11 A4U88_RS13165 1b4afc22666e82334d0bb574852b82a0 107 PIRSF PIRSF004916 1 107 6.0E-55 T 25-04-2017 IPR007376 dsDNA mimic, putative A4U88_RS13165 1b4afc22666e82334d0bb574852b82a0 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 5 107 3.0E-51 T 25-04-2017 IPR007376 dsDNA mimic, putative A4U88_RS13165 1b4afc22666e82334d0bb574852b82a0 107 Gene3D G3DSA:3.10.450.140 7 107 8.4E-49 T 25-04-2017 IPR007376 dsDNA mimic, putative A4U88_RS13165 1b4afc22666e82334d0bb574852b82a0 107 Hamap MF_00680 UPF0263 protein YciU [yciU]. 3 107 34.031 T 25-04-2017 IPR007376 dsDNA mimic, putative A4U88_RS13165 1b4afc22666e82334d0bb574852b82a0 107 SUPERFAMILY SSF102816 1 107 3.66E-51 T 25-04-2017 IPR007376 dsDNA mimic, putative A4U88_RS13165 1b4afc22666e82334d0bb574852b82a0 107 Pfam PF04269 Protein of unknown function, DUF440 6 107 1.9E-45 T 25-04-2017 IPR007376 dsDNA mimic, putative A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 Gene3D G3DSA:2.40.50.100 78 155 2.8E-34 T 25-04-2017 A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 SUPERFAMILY SSF51230 80 155 3.93E-27 T 25-04-2017 IPR011053 Single hybrid motif A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 Pfam PF00364 Biotin-requiring enzyme 81 154 1.0E-26 T 25-04-2017 IPR000089 Biotin/lipoyl attachment A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 155 1.5E-67 T 25-04-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 111 128 - T 25-04-2017 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 116 129 1.3E-18 T 25-04-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 101 115 1.3E-18 T 25-04-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 A4U88_RS21650 fb94643b522099242e7e22683d7669c5 155 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 84 97 1.3E-18 T 25-04-2017 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 A4U88_RS05270 442e73964de0e0230e2de48d55cc6e69 311 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 4 236 2.4E-21 T 25-04-2017 IPR025859 P-aminobenzoate N-oxygenase AurF A4U88_RS03800 bc6e03b75f0cd27a8c377bc748f8e1ea 142 Pfam PF09335 SNARE associated Golgi protein 25 133 5.5E-8 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 Gene3D G3DSA:3.40.50.300 1 206 6.1E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 Gene3D G3DSA:3.40.50.300 431 500 8.6E-5 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 PIRSF PIRSF003128 1 553 2.4E-154 T 25-04-2017 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 512 1.3E-18 T 25-04-2017 IPR003395 RecF/RecN/SMC, N-terminal A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.4E-164 T 25-04-2017 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 SUPERFAMILY SSF52540 360 516 2.74E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 SUPERFAMILY SSF52540 1 199 2.74E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18720 122a94ee24ae22e8665de53919053d18 553 SUPERFAMILY SSF52540 287 331 2.74E-67 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS15940 4acf4806aec9fbcd89855cd01545e208 429 Pfam PF13372 Alginate export 38 414 1.6E-77 T 25-04-2017 IPR025388 Alginate export domain A4U88_RS02310 cb98fe02f2b451ea97d103d106a7a24b 291 PIRSF PIRSF030850 1 289 4.4E-140 T 25-04-2017 IPR011396 Uncharacterised conserved protein UCP030850 A4U88_RS02310 cb98fe02f2b451ea97d103d106a7a24b 291 Pfam PF13391 HNH endonuclease 181 235 2.1E-8 T 25-04-2017 IPR003615 HNH nuclease A4U88_RS21375 829a6bd839c8acb574060ffed3b3d36c 325 Pfam PF01699 Sodium/calcium exchanger protein 175 317 1.2E-28 T 25-04-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 A4U88_RS21375 829a6bd839c8acb574060ffed3b3d36c 325 Pfam PF01699 Sodium/calcium exchanger protein 4 144 2.4E-29 T 25-04-2017 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 A4U88_RS21375 829a6bd839c8acb574060ffed3b3d36c 325 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 312 5.2E-89 T 25-04-2017 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 A4U88_RS11995 eacb9ffd9af77b4aa6008e09ea1143cf 420 SUPERFAMILY SSF53474 176 415 8.52E-44 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11995 eacb9ffd9af77b4aa6008e09ea1143cf 420 Gene3D G3DSA:2.60.40.10 5 148 5.3E-47 T 25-04-2017 IPR013783 Immunoglobulin-like fold A4U88_RS11995 eacb9ffd9af77b4aa6008e09ea1143cf 420 Pfam PF00756 Putative esterase 186 415 4.6E-35 T 25-04-2017 IPR000801 Putative esterase Reactome: R-HSA-156590 A4U88_RS11995 eacb9ffd9af77b4aa6008e09ea1143cf 420 Pfam PF11806 Domain of unknown function (DUF3327) 38 167 2.1E-37 T 25-04-2017 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 A4U88_RS11995 eacb9ffd9af77b4aa6008e09ea1143cf 420 Gene3D G3DSA:3.40.50.1820 171 417 2.3E-64 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS11995 eacb9ffd9af77b4aa6008e09ea1143cf 420 SUPERFAMILY SSF81296 11 161 1.3E-40 T 25-04-2017 IPR014756 Immunoglobulin E-set A4U88_RS20835 e528969837fd95d3d995d5de56b5e976 289 Pfam PF00294 pfkB family carbohydrate kinase 11 276 8.7E-41 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS20835 e528969837fd95d3d995d5de56b5e976 289 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 231 244 - T 25-04-2017 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 A4U88_RS20835 e528969837fd95d3d995d5de56b5e976 289 Gene3D G3DSA:3.40.1190.20 3 287 6.3E-55 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS20835 e528969837fd95d3d995d5de56b5e976 289 SUPERFAMILY SSF53613 2 285 4.05E-52 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 PIRSF PIRSF019401 1 180 1.6E-50 T 25-04-2017 IPR005621 Negative modulator of initiation of replicationr SeqA GO:0003677|GO:0032297 A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 SUPERFAMILY SSF82808 65 179 2.88E-48 T 25-04-2017 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 Gene3D G3DSA:1.10.1220.10 1 40 1.1E-27 T 25-04-2017 IPR013321 Arc-type ribbon-helix-helix GO:0006355 A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 180 43.636 T 25-04-2017 IPR005621 Negative modulator of initiation of replicationr SeqA GO:0003677|GO:0032297 A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 Gene3D G3DSA:1.20.1380.10 67 179 2.0E-53 T 25-04-2017 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 SUPERFAMILY SSF47598 1 35 3.45E-14 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS05835 74fe83a115a6c14cac19960197ee2793 180 Pfam PF03925 SeqA protein C-terminal domain 70 178 1.7E-49 T 25-04-2017 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 A4U88_RS11490 fc9db5424e208870efcd6bd4baf08437 305 SUPERFAMILY SSF103481 192 289 6.28E-10 T 25-04-2017 A4U88_RS11490 fc9db5424e208870efcd6bd4baf08437 305 Pfam PF00892 EamA-like transporter family 166 286 9.1E-15 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS11490 fc9db5424e208870efcd6bd4baf08437 305 Pfam PF00892 EamA-like transporter family 3 135 6.3E-11 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS11490 fc9db5424e208870efcd6bd4baf08437 305 SUPERFAMILY SSF103481 36 138 2.22E-13 T 25-04-2017 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 25-04-2017 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 PIRSF PIRSF001467 1 164 2.8E-28 T 25-04-2017 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 5.9E-12 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 5.9E-12 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 5.9E-12 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 SUPERFAMILY SSF50891 1 162 1.34E-59 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 162 2.6E-47 T 25-04-2017 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 A4U88_RS05435 213f8ed5c0d2affbd86c255a747f39eb 164 Gene3D G3DSA:2.40.100.10 2 162 6.9E-55 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS11460 974ab037e4d8fa46bde9bf4d5da02661 97 Pfam PF15428 Immunity protein 26 23 82 1.5E-7 T 25-04-2017 IPR029278 Immunity protein 26 A4U88_RS16520 f7da027a4af353082eb6525443a1e6c9 500 Gene3D G3DSA:2.60.40.1120 4 79 1.3E-5 T 25-04-2017 IPR014766 Carboxypeptidase, regulatory domain A4U88_RS16520 f7da027a4af353082eb6525443a1e6c9 500 Pfam PF08400 Prophage tail fibre N-terminal 3 131 2.4E-32 T 25-04-2017 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal A4U88_RS16520 f7da027a4af353082eb6525443a1e6c9 500 SUPERFAMILY SSF49464 4 79 5.1E-6 T 25-04-2017 IPR008969 Carboxypeptidase-like, regulatory domain A4U88_RS07765 222d77b246607a21f3d580b5ee611ab7 338 Gene3D G3DSA:3.40.50.720 1 179 1.5E-56 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07765 222d77b246607a21f3d580b5ee611ab7 338 SUPERFAMILY SSF51735 1 337 5.56E-98 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07765 222d77b246607a21f3d580b5ee611ab7 338 Gene3D G3DSA:3.90.25.10 264 337 7.1E-48 T 25-04-2017 A4U88_RS07765 222d77b246607a21f3d580b5ee611ab7 338 Gene3D G3DSA:3.90.25.10 180 232 7.1E-48 T 25-04-2017 A4U88_RS07765 222d77b246607a21f3d580b5ee611ab7 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 3.3E-137 T 25-04-2017 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 A4U88_RS07765 222d77b246607a21f3d580b5ee611ab7 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 325 2.8E-61 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 Gene3D G3DSA:2.30.30.240 106 182 4.0E-29 T 25-04-2017 A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 SUPERFAMILY SSF50447 14 100 7.06E-24 T 25-04-2017 IPR009000 Translation protein, beta-barrel domain A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 Gene3D G3DSA:2.40.30.60 12 100 3.0E-34 T 25-04-2017 IPR002676 RimM protein GO:0006364 A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 Pfam PF05239 PRC-barrel domain 104 174 9.6E-9 T 25-04-2017 IPR027275 PRC-barrel domain A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 Pfam PF01782 RimM N-terminal domain 16 97 8.1E-25 T 25-04-2017 IPR002676 RimM protein GO:0006364 A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 3.0E-58 T 25-04-2017 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 SUPERFAMILY SSF50346 106 182 4.91E-19 T 25-04-2017 IPR011033 PRC-barrel-like A4U88_RS03835 b876163b0df9d3566e86187bf9eeb49a 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.07 T 25-04-2017 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 A4U88_RS01785 a5bf124e4a77d036f3e1df75df3904ec 185 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 183 6.5E-84 T 25-04-2017 IPR006513 Conserved hypothetical protein CHP01626, YtfJ A4U88_RS01785 a5bf124e4a77d036f3e1df75df3904ec 185 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 3.6E-79 T 25-04-2017 IPR006513 Conserved hypothetical protein CHP01626, YtfJ A4U88_RS01785 a5bf124e4a77d036f3e1df75df3904ec 185 Gene3D G3DSA:3.40.30.10 50 179 2.4E-6 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS04030 4b9013d224009e150d2ccdb130ba40b5 263 SMART SM00062 36 256 7.0E-38 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS04030 4b9013d224009e150d2ccdb130ba40b5 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 9.6E-46 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS04030 4b9013d224009e150d2ccdb130ba40b5 263 Gene3D G3DSA:3.40.190.10 142 204 1.0E-12 T 25-04-2017 A4U88_RS04030 4b9013d224009e150d2ccdb130ba40b5 263 SUPERFAMILY SSF53850 8 255 6.72E-51 T 25-04-2017 A4U88_RS04030 4b9013d224009e150d2ccdb130ba40b5 263 Gene3D G3DSA:3.40.190.10 17 141 1.7E-36 T 25-04-2017 A4U88_RS04030 4b9013d224009e150d2ccdb130ba40b5 263 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 SUPERFAMILY SSF56645 21 219 2.49E-41 T 25-04-2017 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 Gene3D G3DSA:1.10.540.10 8 98 1.4E-19 T 25-04-2017 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 Gene3D G3DSA:2.40.110.10 130 213 1.1E-21 T 25-04-2017 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 SUPERFAMILY SSF47203 233 377 1.07E-9 T 25-04-2017 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 Gene3D G3DSA:1.20.140.10 214 398 1.7E-41 T 25-04-2017 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 211 6.1E-9 T 25-04-2017 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 A4U88_RS15725 a429d344fd28f281a94c520a8cb4cfea 405 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 242 376 1.3E-11 T 25-04-2017 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain A4U88_RS06360 2ed2dc4e0d6e8f58e1b07501e5ba7bd8 319 Gene3D G3DSA:3.40.50.720 117 289 1.1E-57 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06360 2ed2dc4e0d6e8f58e1b07501e5ba7bd8 319 Gene3D G3DSA:3.40.50.720 4 116 1.7E-23 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06360 2ed2dc4e0d6e8f58e1b07501e5ba7bd8 319 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 114 288 6.4E-53 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS06360 2ed2dc4e0d6e8f58e1b07501e5ba7bd8 319 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 315 1.6E-11 T 25-04-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 A4U88_RS06360 2ed2dc4e0d6e8f58e1b07501e5ba7bd8 319 SUPERFAMILY SSF51735 109 289 6.87E-50 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06360 2ed2dc4e0d6e8f58e1b07501e5ba7bd8 319 SUPERFAMILY SSF52283 1 127 3.83E-24 T 25-04-2017 A4U88_RS15045 410cd8191f0c24d5f646c1bb4197f8c4 325 SUPERFAMILY SSF102405 87 299 3.43E-24 T 25-04-2017 A4U88_RS15045 410cd8191f0c24d5f646c1bb4197f8c4 325 Pfam PF02481 DNA recombination-mediator protein A 79 286 4.1E-61 T 25-04-2017 IPR003488 DNA recombination-mediator protein A GO:0009294 A4U88_RS15045 410cd8191f0c24d5f646c1bb4197f8c4 325 Gene3D G3DSA:3.40.50.450 117 273 2.3E-9 T 25-04-2017 A4U88_RS15655 ce40bad736d6d06d490f7ab375c60bf9 311 SUPERFAMILY SSF53850 26 306 2.2E-49 T 25-04-2017 A4U88_RS15655 ce40bad736d6d06d490f7ab375c60bf9 311 Pfam PF09084 NMT1/THI5 like 34 244 8.6E-68 T 25-04-2017 IPR015168 SsuA/THI5-like A4U88_RS15655 ce40bad736d6d06d490f7ab375c60bf9 311 Gene3D G3DSA:3.40.190.10 113 216 1.3E-14 T 25-04-2017 A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Pfam PF04348 LppC putative lipoprotein 358 673 1.7E-90 T 25-04-2017 IPR007443 Penicillin-binding protein activator LpoA A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Pfam PF04348 LppC putative lipoprotein 45 291 3.7E-55 T 25-04-2017 IPR007443 Penicillin-binding protein activator LpoA A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 SUPERFAMILY SSF53822 358 488 6.73E-77 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 SUPERFAMILY SSF53822 263 291 6.73E-77 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 SUPERFAMILY SSF53822 524 678 6.73E-77 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 6 673 36.643 T 25-04-2017 IPR007443 Penicillin-binding protein activator LpoA A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Gene3D G3DSA:3.40.50.2300 429 489 4.6E-55 T 25-04-2017 A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Gene3D G3DSA:3.40.50.2300 526 602 4.6E-55 T 25-04-2017 A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Gene3D G3DSA:3.40.50.2300 261 291 1.8E-71 T 25-04-2017 A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Gene3D G3DSA:3.40.50.2300 603 666 1.8E-71 T 25-04-2017 A4U88_RS21235 798a39e1cc1261a6dac401caa3f28dac 679 Gene3D G3DSA:3.40.50.2300 358 428 1.8E-71 T 25-04-2017 A4U88_RS11315 45ae7fa50eeb213423bc5b20be04eafe 209 Gene3D G3DSA:3.40.50.850 19 207 2.2E-48 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS11315 45ae7fa50eeb213423bc5b20be04eafe 209 Pfam PF00857 Isochorismatase family 24 197 9.4E-32 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS11315 45ae7fa50eeb213423bc5b20be04eafe 209 SUPERFAMILY SSF52499 16 207 6.41E-48 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS14905 712c3ef32100d5745656796a595f46a9 369 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 14 286 1.8E-51 T 25-04-2017 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 A4U88_RS14905 712c3ef32100d5745656796a595f46a9 369 SUPERFAMILY SSF55931 4 364 7.75E-87 T 25-04-2017 A4U88_RS14905 712c3ef32100d5745656796a595f46a9 369 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 369 69.642 T 25-04-2017 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 A4U88_RS14905 712c3ef32100d5745656796a595f46a9 369 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 13 292 6.8E-81 T 25-04-2017 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 A4U88_RS18235 56ec12ff1ec0f08cf9faac1aaad21022 345 Pfam PF13533 Biotin-lipoyl like 48 93 6.4E-13 T 25-04-2017 A4U88_RS18235 56ec12ff1ec0f08cf9faac1aaad21022 345 Pfam PF13437 HlyD family secretion protein 210 292 1.2E-12 T 25-04-2017 A4U88_RS18235 56ec12ff1ec0f08cf9faac1aaad21022 345 SUPERFAMILY SSF111369 184 294 4.05E-12 T 25-04-2017 A4U88_RS18235 56ec12ff1ec0f08cf9faac1aaad21022 345 Gene3D G3DSA:2.40.50.100 47 80 2.8E-18 T 25-04-2017 A4U88_RS18235 56ec12ff1ec0f08cf9faac1aaad21022 345 Gene3D G3DSA:2.40.50.100 207 240 2.8E-18 T 25-04-2017 A4U88_RS18235 56ec12ff1ec0f08cf9faac1aaad21022 345 SUPERFAMILY SSF111369 46 113 4.58E-11 T 25-04-2017 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 307 37.253 T 25-04-2017 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 4.3E-115 T 25-04-2017 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 Pfam PF00551 Formyl transferase 6 183 9.3E-52 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 Gene3D G3DSA:3.40.50.170 4 208 7.0E-75 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 Pfam PF02911 Formyl transferase, C-terminal domain 207 304 1.4E-32 T 25-04-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 Gene3D G3DSA:3.10.25.10 210 307 1.7E-36 T 25-04-2017 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 SUPERFAMILY SSF53328 5 207 1.19E-67 T 25-04-2017 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 A4U88_RS22175 2118fed4fee7a0c25d4297090d8d29e5 314 SUPERFAMILY SSF50486 208 309 1.73E-37 T 25-04-2017 IPR011034 Formyl transferase, C-terminal-like GO:0003824 A4U88_RS05660 3db8f5922ca29d5f35b5515f89a67802 234 Pfam PF02525 Flavodoxin-like fold 3 192 7.1E-43 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS05660 3db8f5922ca29d5f35b5515f89a67802 234 Gene3D G3DSA:3.40.50.360 1 191 9.0E-60 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS05660 3db8f5922ca29d5f35b5515f89a67802 234 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 31.596 T 25-04-2017 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 A4U88_RS05660 3db8f5922ca29d5f35b5515f89a67802 234 SUPERFAMILY SSF52218 1 199 1.92E-52 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS02115 8898942bb6241c48300fb861d8776e65 286 PIRSF PIRSF011468 1 286 1.4E-166 T 25-04-2017 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 A4U88_RS02115 8898942bb6241c48300fb861d8776e65 286 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 278 8.6E-148 T 25-04-2017 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 2.9E-17 T 25-04-2017 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 56 121 1.0E-27 T 25-04-2017 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 Gene3D G3DSA:3.30.1390.10 51 121 4.3E-34 T 25-04-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 25.559 T 25-04-2017 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 3.5E-48 T 25-04-2017 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 SUPERFAMILY SSF48300 3 57 2.22E-16 T 25-04-2017 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 SUPERFAMILY SSF54736 50 121 3.84E-25 T 25-04-2017 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 4.1E-31 T 25-04-2017 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS01165 48b216b10b7b0bc4f3ff21a09c705e2f 121 Gene3D G3DSA:1.20.5.710 2 50 2.4E-23 T 25-04-2017 A4U88_RS11940 226ed3e9a11d05f662032a7124002964 141 PIRSF PIRSF029509 1 141 5.5E-42 T 25-04-2017 IPR016923 Uncharacterised conserved protein UCP029509, membrane A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 Gene3D G3DSA:3.40.190.10 179 259 3.4E-4 T 25-04-2017 A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 Gene3D G3DSA:3.40.190.10 92 178 3.4E-25 T 25-04-2017 A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 Gene3D G3DSA:1.10.10.10 2 83 2.7E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 SUPERFAMILY SSF53850 89 293 2.17E-41 T 25-04-2017 A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 Pfam PF03466 LysR substrate binding domain 88 292 1.9E-39 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 SUPERFAMILY SSF46785 3 109 1.05E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.0E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.0E-7 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15210 fba5004b8fafd87386a140493235c6fc 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.8E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 SUPERFAMILY SSF81624 2 127 1.44E-22 T 25-04-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 SMART SM00898 2 110 1.2E-15 T 25-04-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 SMART SM01232 126 221 5.4E-14 T 25-04-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 Pfam PF06827 Zinc finger found in FPG and IleRS 235 263 3.5E-8 T 25-04-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 SUPERFAMILY SSF57716 226 263 3.09E-11 T 25-04-2017 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 Gene3D G3DSA:1.10.8.50 126 263 7.3E-33 T 25-04-2017 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 103 1.7E-9 T 25-04-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 Gene3D G3DSA:3.20.190.10 2 104 1.7E-15 T 25-04-2017 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 SUPERFAMILY SSF46946 125 215 4.56E-17 T 25-04-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 ProSitePatterns PS01242 Zinc finger FPG-type signature. 238 262 - T 25-04-2017 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 A4U88_RS05940 37d38cbe5ee241690c98d39a6a2362f6 263 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 126 205 1.4E-11 T 25-04-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 A4U88_RS23775 96d52bf4552042649f3948108ac3d02c 257 Gene3D G3DSA:3.90.550.10 7 121 1.3E-14 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS23775 96d52bf4552042649f3948108ac3d02c 257 SUPERFAMILY SSF53448 3 151 1.5E-27 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS23775 96d52bf4552042649f3948108ac3d02c 257 Pfam PF00535 Glycosyl transferase family 2 8 139 1.0E-18 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 Gene3D G3DSA:3.40.710.10 254 616 4.3E-95 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 616 1.6E-222 T 25-04-2017 IPR017790 Penicillin-binding protein 2 GO:0016020 A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 SUPERFAMILY SSF56601 255 619 1.55E-86 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 612 3.1E-71 T 25-04-2017 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 SUPERFAMILY SSF56519 58 254 6.28E-52 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 Gene3D G3DSA:3.90.1310.10 130 253 3.2E-40 T 25-04-2017 A4U88_RS11540 bb8229c317c0013dd66594887eb135bb 641 Pfam PF03717 Penicillin-binding Protein dimerisation domain 66 238 5.1E-49 T 25-04-2017 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 A4U88_RS21120 bf3adb0fb55df8e39787f3daaaceb4d9 379 SUPERFAMILY SSF53335 197 374 3.93E-25 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS21120 bf3adb0fb55df8e39787f3daaaceb4d9 379 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 51.475 T 25-04-2017 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS21120 bf3adb0fb55df8e39787f3daaaceb4d9 379 PIRSF PIRSF037565 1 375 2.3E-169 T 25-04-2017 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 A4U88_RS21120 bf3adb0fb55df8e39787f3daaaceb4d9 379 Gene3D G3DSA:3.40.50.150 198 374 7.3E-24 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS21120 bf3adb0fb55df8e39787f3daaaceb4d9 379 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS21120 bf3adb0fb55df8e39787f3daaaceb4d9 379 Pfam PF05175 Methyltransferase small domain 201 371 7.6E-56 T 25-04-2017 IPR007848 Methyltransferase small domain GO:0008168 A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 Gene3D G3DSA:3.40.50.300 5 253 1.3E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 PIRSF PIRSF037116 1 257 1.9E-141 T 25-04-2017 IPR012700 Phosphonate C-P lyase system, PhnK A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 SUPERFAMILY SSF52540 4 254 1.13E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 SMART SM00382 31 229 1.4E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 Pfam PF00005 ABC transporter 23 179 2.2E-29 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS02110 9613d45bbdcf39c39ac8bdf29e91af7e 257 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 5 256 5.9E-120 T 25-04-2017 IPR012700 Phosphonate C-P lyase system, PhnK A4U88_RS17100 6703be7344ce51f66a7ed5a031f14b54 166 Gene3D G3DSA:3.40.30.10 11 153 1.2E-28 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS17100 6703be7344ce51f66a7ed5a031f14b54 166 Pfam PF08534 Redoxin 38 148 2.4E-14 T 25-04-2017 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 A4U88_RS17100 6703be7344ce51f66a7ed5a031f14b54 166 SUPERFAMILY SSF52833 11 155 1.57E-27 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 5.1E-71 T 25-04-2017 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 25-04-2017 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.203 T 25-04-2017 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 Gene3D G3DSA:1.10.455.10 8 156 1.5E-67 T 25-04-2017 IPR023798 Ribosomal protein S7 domain A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 SUPERFAMILY SSF47973 6 149 3.27E-60 T 25-04-2017 IPR023798 Ribosomal protein S7 domain A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.8E-65 T 25-04-2017 IPR023798 Ribosomal protein S7 domain A4U88_RS22375 6387e21530a73366bd1a731484a1d79b 156 PIRSF PIRSF002122 3 156 1.4E-63 T 25-04-2017 IPR000235 Ribosomal protein S5/S7 GO:0006412 A4U88_RS24215 f456901a9f66e916d2d4c0a792576cfa 241 SUPERFAMILY SSF56214 22 90 3.77E-5 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS24215 f456901a9f66e916d2d4c0a792576cfa 241 Gene3D G3DSA:3.90.470.20 106 161 7.5E-6 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS24215 f456901a9f66e916d2d4c0a792576cfa 241 Gene3D G3DSA:3.90.470.20 23 105 2.7E-8 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS24215 f456901a9f66e916d2d4c0a792576cfa 241 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 99 186 5.1E-5 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS24215 f456901a9f66e916d2d4c0a792576cfa 241 SUPERFAMILY SSF56214 98 196 9.24E-7 T 25-04-2017 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 10 253 1.5E-80 T 25-04-2017 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 Gene3D G3DSA:3.40.190.10 116 213 1.5E-28 T 25-04-2017 A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 Gene3D G3DSA:3.40.190.10 27 114 5.4E-41 T 25-04-2017 A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 Gene3D G3DSA:3.40.190.10 215 257 5.4E-41 T 25-04-2017 A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 SUPERFAMILY SSF53850 1 256 7.91E-65 T 25-04-2017 A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 254 3.4E-63 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS16205 e97a0dc3fdd3ffbfe7143fe2dfcd9d6b 262 SMART SM00062 28 256 2.0E-74 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS12670 cbf188e089925bd41d63ee4ba22884b6 235 SUPERFAMILY SSF53187 134 215 1.89E-31 T 25-04-2017 A4U88_RS12670 cbf188e089925bd41d63ee4ba22884b6 235 SUPERFAMILY SSF53187 18 107 1.89E-31 T 25-04-2017 A4U88_RS12670 cbf188e089925bd41d63ee4ba22884b6 235 Gene3D G3DSA:3.40.630.10 17 227 1.4E-39 T 25-04-2017 A4U88_RS12670 cbf188e089925bd41d63ee4ba22884b6 235 Pfam PF00246 Zinc carboxypeptidase 45 157 7.4E-12 T 25-04-2017 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 A4U88_RS14190 b8649653fe9e7002a302bc88bd3725ba 522 PIRSF PIRSF002741 4 518 1.4E-59 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS14190 b8649653fe9e7002a302bc88bd3725ba 522 SUPERFAMILY SSF53850 22 517 3.94E-97 T 25-04-2017 A4U88_RS14190 b8649653fe9e7002a302bc88bd3725ba 522 Gene3D G3DSA:3.40.190.10 142 292 2.2E-26 T 25-04-2017 A4U88_RS14190 b8649653fe9e7002a302bc88bd3725ba 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 437 3.3E-64 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS14190 b8649653fe9e7002a302bc88bd3725ba 522 Gene3D G3DSA:3.10.105.10 293 489 2.0E-36 T 25-04-2017 A4U88_RS05570 d76506472614478f2b9064db8c5cf5a9 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.662 T 25-04-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 A4U88_RS05570 d76506472614478f2b9064db8c5cf5a9 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 4.5E-40 T 25-04-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 A4U88_RS05570 d76506472614478f2b9064db8c5cf5a9 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 116 3.3E-24 T 25-04-2017 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.3E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.3E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.3E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 6.3E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.3E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 6.3E-28 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 SUPERFAMILY SSF51735 1 259 2.64E-61 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 Gene3D G3DSA:3.40.50.720 2 259 5.3E-65 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 259 3.9E-40 T 25-04-2017 A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 3.2E-5 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.2E-5 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23080 95979184bb710f6d19661d9fea009079 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 3.2E-5 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03890 9d136f2e11bda0fc42f4790935713aaa 243 Pfam PF13525 Outer membrane lipoprotein 28 236 3.2E-82 T 25-04-2017 A4U88_RS03890 9d136f2e11bda0fc42f4790935713aaa 243 SUPERFAMILY SSF48452 26 119 6.64E-8 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS03890 9d136f2e11bda0fc42f4790935713aaa 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 38.177 T 25-04-2017 IPR017689 Outer membrane protein assembly factor BamD A4U88_RS03890 9d136f2e11bda0fc42f4790935713aaa 243 Gene3D G3DSA:1.25.40.10 34 201 3.2E-5 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS03890 9d136f2e11bda0fc42f4790935713aaa 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 2.0E-86 T 25-04-2017 IPR017689 Outer membrane protein assembly factor BamD A4U88_RS07475 b05ce6a6c8e7437fbbe587eb3f10821a 75 Pfam PF01361 Tautomerase enzyme 2 64 1.5E-11 T 25-04-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 A4U88_RS07475 b05ce6a6c8e7437fbbe587eb3f10821a 75 Gene3D G3DSA:3.30.429.20 1 61 2.4E-16 T 25-04-2017 A4U88_RS07475 b05ce6a6c8e7437fbbe587eb3f10821a 75 SUPERFAMILY SSF55331 2 62 8.99E-12 T 25-04-2017 IPR014347 Tautomerase/MIF superfamily A4U88_RS08320 0a3c8aca89bc8a24ec049c3da215bfe7 229 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.246 T 25-04-2017 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 A4U88_RS08320 0a3c8aca89bc8a24ec049c3da215bfe7 229 Gene3D G3DSA:3.40.50.300 6 221 2.5E-77 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08320 0a3c8aca89bc8a24ec049c3da215bfe7 229 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 8.0E-93 T 25-04-2017 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 A4U88_RS08320 0a3c8aca89bc8a24ec049c3da215bfe7 229 SUPERFAMILY SSF52540 6 224 2.31E-48 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08320 0a3c8aca89bc8a24ec049c3da215bfe7 229 Pfam PF02224 Cytidylate kinase 8 221 1.6E-82 T 25-04-2017 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 A4U88_RS19590 c221fbd4b418f3d4f4d15093e24dc364 406 Pfam PF07690 Major Facilitator Superfamily 37 365 2.2E-16 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19590 c221fbd4b418f3d4f4d15093e24dc364 406 SUPERFAMILY SSF103473 11 401 1.57E-42 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19590 c221fbd4b418f3d4f4d15093e24dc364 406 Gene3D G3DSA:1.20.1250.20 15 208 2.1E-18 T 25-04-2017 A4U88_RS19590 c221fbd4b418f3d4f4d15093e24dc364 406 Gene3D G3DSA:1.20.1250.20 220 398 8.6E-9 T 25-04-2017 A4U88_RS10300 8a51d58c98424d7ae35bf6c313fe65a7 281 SUPERFAMILY SSF103481 38 137 1.14E-15 T 25-04-2017 A4U88_RS10300 8a51d58c98424d7ae35bf6c313fe65a7 281 Pfam PF00892 EamA-like transporter family 4 133 1.6E-16 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS10300 8a51d58c98424d7ae35bf6c313fe65a7 281 Pfam PF00892 EamA-like transporter family 146 270 9.2E-9 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS10300 8a51d58c98424d7ae35bf6c313fe65a7 281 SUPERFAMILY SSF103481 177 278 1.31E-12 T 25-04-2017 A4U88_RS18780 8b079cc28fa775bb2fc96399b913626a 537 Pfam PF10749 Protein of unknown function (DUF2534) 458 534 3.0E-26 T 25-04-2017 IPR019685 Protein of unknown function DUF2534 A4U88_RS18780 8b079cc28fa775bb2fc96399b913626a 537 Pfam PF03929 PepSY-associated TM region 6 384 5.7E-54 T 25-04-2017 IPR005625 PepSY-associated TM protein A4U88_RS21175 e353fc4e0197941f0a1bf878ea32e7da 226 Pfam PF09335 SNARE associated Golgi protein 48 172 5.8E-21 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS16275 2adb2c93e79a29698f0e1ad71bed693f 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 323 7.9E-38 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS02975 0fb82d6c0f9cf4a99bb80e70b3f5f06b 215 Gene3D G3DSA:3.40.50.1240 2 208 2.7E-58 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS02975 0fb82d6c0f9cf4a99bb80e70b3f5f06b 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 53.911 T 25-04-2017 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 A4U88_RS02975 0fb82d6c0f9cf4a99bb80e70b3f5f06b 215 SMART SM00855 3 157 2.2E-22 T 25-04-2017 IPR013078 Histidine phosphatase superfamily, clade-1 A4U88_RS02975 0fb82d6c0f9cf4a99bb80e70b3f5f06b 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 25-04-2017 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 A4U88_RS02975 0fb82d6c0f9cf4a99bb80e70b3f5f06b 215 SUPERFAMILY SSF53254 1 209 5.24E-55 T 25-04-2017 IPR029033 Histidine phosphatase superfamily A4U88_RS02975 0fb82d6c0f9cf4a99bb80e70b3f5f06b 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 8.1E-56 T 25-04-2017 IPR013078 Histidine phosphatase superfamily, clade-1 A4U88_RS02575 c2908cdd543a1010be1e75e77663f2e9 458 Pfam PF13520 Amino acid permease 14 430 1.2E-34 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS02575 c2908cdd543a1010be1e75e77663f2e9 458 PIRSF PIRSF006060 1 445 1.7E-52 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS12100 36d3f35b52a4013b58e9f2830aabba01 379 SUPERFAMILY SSF55909 37 372 3.03E-107 T 25-04-2017 A4U88_RS12100 36d3f35b52a4013b58e9f2830aabba01 379 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 40 372 2.1E-97 T 25-04-2017 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 A4U88_RS12100 36d3f35b52a4013b58e9f2830aabba01 379 Gene3D G3DSA:3.75.10.10 37 373 2.8E-111 T 25-04-2017 A4U88_RS21925 4762ec41a3440c9d7dc3f8683efde285 171 Pfam PF04345 Chorismate lyase 14 168 6.7E-34 T 25-04-2017 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148 A4U88_RS21925 4762ec41a3440c9d7dc3f8683efde285 171 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 166 26.67 T 25-04-2017 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148 A4U88_RS21925 4762ec41a3440c9d7dc3f8683efde285 171 SUPERFAMILY SSF64288 8 166 1.75E-49 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS21925 4762ec41a3440c9d7dc3f8683efde285 171 Gene3D G3DSA:3.40.1410.10 13 166 1.8E-57 T 25-04-2017 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 1.0E-156 T 25-04-2017 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 3.0E-146 T 25-04-2017 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 SUPERFAMILY SSF55729 1 338 6.28E-134 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 337 5.3E-144 T 25-04-2017 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 Gene3D G3DSA:3.40.630.30 1 79 2.5E-5 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 Gene3D G3DSA:3.40.630.30 114 138 2.5E-5 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS13945 a68a51a91dfc3606a09a9a858b5dfc4e 344 Gene3D G3DSA:2.40.40.20 274 338 6.8E-14 T 25-04-2017 A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 25-04-2017 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 SUPERFAMILY SSF55594 4 90 4.19E-24 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 5.2E-22 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 Gene3D G3DSA:3.30.1340.10 3 89 4.8E-26 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 1.6E-22 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 6.3E-10 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 6.3E-10 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS21425 3b15e3b78757199f0031815eb6eabff9 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 6.3E-10 T 25-04-2017 IPR000032 Phosphocarrier protein HPr-like A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 391 9.9E-110 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 SUPERFAMILY SSF53383 21 393 2.6E-89 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 Gene3D G3DSA:3.90.1150.10 259 394 2.2E-35 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 8 394 2.6E-172 T 25-04-2017 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 Gene3D G3DSA:3.40.640.10 5 258 6.2E-72 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 202 216 - T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS20780 4f70bb01426447fcca74e707afeec545 398 PIRSF PIRSF001434 1 395 6.2E-111 T 25-04-2017 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 A4U88_RS06190 691ed09aba387bd73cacf972a1adfed5 340 Gene3D G3DSA:1.10.3470.10 9 163 9.4E-30 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS06190 691ed09aba387bd73cacf972a1adfed5 340 Pfam PF01032 FecCD transport family 23 122 5.1E-24 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS06190 691ed09aba387bd73cacf972a1adfed5 340 SUPERFAMILY SSF81345 10 125 4.84E-20 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 SUPERFAMILY SSF53706 137 866 1.27E-109 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 SUPERFAMILY SSF53706 75 110 1.27E-109 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 76 152 5.8E-5 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:2.20.25.90 75 157 2.4E-11 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Pfam PF01568 Molydopterin dinucleotide binding domain 894 988 3.7E-12 T 25-04-2017 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 SUPERFAMILY SSF50692 872 998 4.29E-25 T 25-04-2017 IPR009010 Aspartate decarboxylase-like domain A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Pfam PF00384 Molybdopterin oxidoreductase 243 683 1.5E-12 T 25-04-2017 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:3.40.228.10 458 556 1.0E-40 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:3.40.228.10 261 375 1.0E-40 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:3.40.50.740 710 729 1.1E-28 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:3.40.50.740 158 260 1.1E-28 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:3.40.50.740 609 678 1.1E-28 T 25-04-2017 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 SMART SM00926 71 153 1.8E-14 T 25-04-2017 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16490 fa8b9e1ddbc81f6003132f7f351ca687 1023 Gene3D G3DSA:2.40.40.20 869 1021 6.9E-24 T 25-04-2017 A4U88_RS07400 b1d28cbfa64bc7f167eacb681ce0a392 346 Gene3D G3DSA:2.60.40.1090 214 345 1.6E-4 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS07400 b1d28cbfa64bc7f167eacb681ce0a392 346 SUPERFAMILY SSF49401 215 345 3.13E-15 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS07400 b1d28cbfa64bc7f167eacb681ce0a392 346 Pfam PF00419 Fimbrial protein 190 346 4.1E-22 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 520 1.4E-122 T 25-04-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 306 4.5E-110 T 25-04-2017 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 Pfam PF02690 Na+/Pi-cotransporter 159 255 1.1E-9 T 25-04-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 Pfam PF02690 Na+/Pi-cotransporter 13 147 1.6E-34 T 25-04-2017 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 Gene3D G3DSA:1.20.58.220 327 422 4.8E-7 T 25-04-2017 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 SUPERFAMILY SSF109755 320 531 1.78E-26 T 25-04-2017 A4U88_RS22025 0438bb5ef65fcdf5935d93378f90be79 549 Pfam PF01895 PhoU domain 340 422 1.9E-7 T 25-04-2017 IPR026022 PhoU domain A4U88_RS17565 57e8d6ed5e2cef17d7236550374b2bc9 182 Pfam PF06042 Nucleotidyltransferase 23 178 4.3E-58 T 25-04-2017 IPR009267 Putative nucleotidyltransferase A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 SMART SM00267 341 517 8.1E-59 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 Gene3D G3DSA:3.30.450.20 185 294 7.1E-6 T 25-04-2017 A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 SUPERFAMILY SSF55073 357 515 2.79E-45 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 Gene3D G3DSA:3.30.70.270 355 514 1.1E-48 T 25-04-2017 A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 Pfam PF02743 Cache domain 53 282 3.9E-20 T 25-04-2017 IPR033479 Double Cache domain 1 A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 SUPERFAMILY SSF103190 113 205 5.89E-5 T 25-04-2017 IPR029151 Periplasmic sensor domain-like A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 Pfam PF00990 Diguanylate cyclase, GGDEF domain 352 512 2.3E-48 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 Gene3D G3DSA:3.30.450.20 100 184 7.3E-16 T 25-04-2017 A4U88_RS15245 f57884f93e9043776a33f4cbbba1dc4e 517 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 348 515 1.6E-50 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS02075 92dbaf3d8d5ecc81764d76b52db17eca 146 Gene3D G3DSA:2.30.110.10 4 141 2.3E-7 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS02075 92dbaf3d8d5ecc81764d76b52db17eca 146 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 6 143 33.865 T 25-04-2017 IPR011194 Uncharacterised protein family UPF0306 A4U88_RS02075 92dbaf3d8d5ecc81764d76b52db17eca 146 SUPERFAMILY SSF50475 4 143 4.17E-18 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS02075 92dbaf3d8d5ecc81764d76b52db17eca 146 PIRSF PIRSF009554 3 145 2.7E-59 T 25-04-2017 IPR011194 Uncharacterised protein family UPF0306 A4U88_RS16305 51f6d605747a15dd9ceb38d64e07bcb2 492 Pfam PF00324 Amino acid permease 24 474 1.5E-142 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS16305 51f6d605747a15dd9ceb38d64e07bcb2 492 PIRSF PIRSF006060 1 492 5.6E-81 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS16305 51f6d605747a15dd9ceb38d64e07bcb2 492 ProSitePatterns PS00218 Amino acid permeases signature. 49 80 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS09150 d96f3b921b06b2e395c5a4679b06d71f 79 Pfam PF06183 DinI-like family 14 76 3.3E-29 T 25-04-2017 IPR010391 DNA damage-inducible protein DinI-like A4U88_RS09150 d96f3b921b06b2e395c5a4679b06d71f 79 SUPERFAMILY SSF54857 1 78 5.49E-28 T 25-04-2017 IPR010391 DNA damage-inducible protein DinI-like A4U88_RS09150 d96f3b921b06b2e395c5a4679b06d71f 79 Gene3D G3DSA:3.30.910.10 1 77 1.2E-31 T 25-04-2017 IPR010391 DNA damage-inducible protein DinI-like A4U88_RS10565 bf9b8f3824b71a0b779f13b69b6263fb 130 SUPERFAMILY SSF103481 47 124 1.29E-10 T 25-04-2017 A4U88_RS10565 bf9b8f3824b71a0b779f13b69b6263fb 130 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 2 126 22.951 T 25-04-2017 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF A4U88_RS18515 0376d88d165b7db3cedfcd1bf5388c31 268 SUPERFAMILY SSF161098 8 256 1.24E-46 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18515 0376d88d165b7db3cedfcd1bf5388c31 268 Gene3D G3DSA:1.10.3720.10 12 258 2.6E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18515 0376d88d165b7db3cedfcd1bf5388c31 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 248 3.3E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14240 b4200a1a9320d0ae359e395742e8355b 281 Pfam PF03239 Iron permease FTR1 family 1 255 6.5E-71 T 25-04-2017 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 A4U88_RS14240 b4200a1a9320d0ae359e395742e8355b 281 TIGRFAM TIGR00145 TIGR00145: FTR1 family protein 1 261 1.2E-91 T 25-04-2017 IPR005217 Iron permease FTR1-like GO:0005381|GO:0005886|GO:0006827|GO:0033573 A4U88_RS09775 8d36935d9840e1f40d70f777f9e1f3cf 305 Pfam PF00480 ROK family 2 300 6.2E-69 T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS09775 8d36935d9840e1f40d70f777f9e1f3cf 305 Gene3D G3DSA:3.30.420.40 132 278 3.4E-47 T 25-04-2017 A4U88_RS09775 8d36935d9840e1f40d70f777f9e1f3cf 305 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 304 66.794 T 25-04-2017 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 A4U88_RS09775 8d36935d9840e1f40d70f777f9e1f3cf 305 SUPERFAMILY SSF53067 1 301 6.22E-58 T 25-04-2017 A4U88_RS09775 8d36935d9840e1f40d70f777f9e1f3cf 305 Gene3D G3DSA:3.30.420.40 1 131 7.9E-38 T 25-04-2017 A4U88_RS09775 8d36935d9840e1f40d70f777f9e1f3cf 305 ProSitePatterns PS01125 ROK family signature. 130 157 - T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS03655 e8e429738fd80eb12221c74bedcd5198 157 Pfam PF02542 YgbB family 1 154 3.6E-66 T 25-04-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 A4U88_RS03655 e8e429738fd80eb12221c74bedcd5198 157 Gene3D G3DSA:3.30.1330.50 1 156 7.4E-73 T 25-04-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 A4U88_RS03655 e8e429738fd80eb12221c74bedcd5198 157 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.7 T 25-04-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 A4U88_RS03655 e8e429738fd80eb12221c74bedcd5198 157 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 156 1.3E-70 T 25-04-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 A4U88_RS03655 e8e429738fd80eb12221c74bedcd5198 157 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 25-04-2017 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 A4U88_RS03655 e8e429738fd80eb12221c74bedcd5198 157 SUPERFAMILY SSF69765 1 156 6.67E-66 T 25-04-2017 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 A4U88_RS11815 3763dab7d7d41da71cff681c4fc008d8 489 Gene3D G3DSA:3.90.1150.10 370 487 4.1E-43 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS11815 3763dab7d7d41da71cff681c4fc008d8 489 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 67 417 3.3E-63 T 25-04-2017 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 A4U88_RS11815 3763dab7d7d41da71cff681c4fc008d8 489 SUPERFAMILY SSF53383 15 487 1.5E-118 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS11815 3763dab7d7d41da71cff681c4fc008d8 489 Gene3D G3DSA:3.40.640.10 93 369 2.1E-97 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS11815 3763dab7d7d41da71cff681c4fc008d8 489 Gene3D G3DSA:1.20.1650.10 11 81 1.1E-4 T 25-04-2017 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 327 343 - T 25-04-2017 IPR013793 Porin, Gram-negative type, conserved site A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 3.3E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 3.3E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 231 243 3.3E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 3.3E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 327 344 3.3E-16 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 Pfam PF00267 Gram-negative porin 28 375 1.6E-150 T 25-04-2017 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 Gene3D G3DSA:2.40.160.10 23 375 8.3E-110 T 25-04-2017 IPR023614 Porin domain A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 SUPERFAMILY SSF56935 23 375 1.28E-87 T 25-04-2017 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 6.9E-72 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 6.9E-72 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 6.9E-72 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 6.9E-72 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 237 254 6.9E-72 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS08430 e495357e452497aa3312083bcb4ca36f 375 PRINTS PR00183 E.coli/Salmonella-type porin signature 280 299 6.9E-72 T 25-04-2017 IPR001897 Porin, gammaproteobacterial GO:0006810|GO:0015288|GO:0016020 A4U88_RS03000 718e9dc9e2b48dc4d3ce4886a4e88e42 28 Pfam PF08254 Threonine leader peptide 7 28 2.9E-11 T 25-04-2017 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 A4U88_RS03000 718e9dc9e2b48dc4d3ce4886a4e88e42 28 Hamap MF_01907 Thr operon leader peptide [thrL]. 7 28 11.862 T 25-04-2017 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 A4U88_RS03000 718e9dc9e2b48dc4d3ce4886a4e88e42 28 TIGRFAM TIGR02077 thr_lead_pep: thr operon leader peptide 7 28 1.3E-9 T 25-04-2017 IPR011720 Thr operon leader peptide GO:0009088|GO:0031554|GO:0031556 A4U88_RS11385 4d515093844e07b99f27d41b11bc21ad 274 PIRSF PIRSF015853 1 274 7.0E-95 T 25-04-2017 IPR007035 Peptidase M55, D-aminopeptidase A4U88_RS11385 4d515093844e07b99f27d41b11bc21ad 274 Pfam PF04951 D-aminopeptidase 2 264 1.9E-92 T 25-04-2017 IPR007035 Peptidase M55, D-aminopeptidase A4U88_RS11385 4d515093844e07b99f27d41b11bc21ad 274 SUPERFAMILY SSF63992 2 271 6.15E-84 T 25-04-2017 IPR007035 Peptidase M55, D-aminopeptidase A4U88_RS11385 4d515093844e07b99f27d41b11bc21ad 274 Gene3D G3DSA:3.40.50.10780 2 209 5.4E-73 T 25-04-2017 IPR027476 D-aminopeptidase, N-terminal A4U88_RS14225 87422702e3c1db31c263ebe276ab93a7 216 Pfam PF02562 PhoH-like protein 11 215 4.6E-78 T 25-04-2017 IPR003714 PhoH-like protein GO:0005524 A4U88_RS14225 87422702e3c1db31c263ebe276ab93a7 216 Gene3D G3DSA:3.40.50.300 10 215 7.2E-70 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS14225 87422702e3c1db31c263ebe276ab93a7 216 SUPERFAMILY SSF52540 12 193 2.85E-31 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04900 ffa5559ee21a8579a97bab39bc64375c 454 Gene3D G3DSA:1.20.1250.20 11 190 1.1E-32 T 25-04-2017 A4U88_RS04900 ffa5559ee21a8579a97bab39bc64375c 454 Gene3D G3DSA:1.20.1250.20 211 392 3.2E-24 T 25-04-2017 A4U88_RS04900 ffa5559ee21a8579a97bab39bc64375c 454 Pfam PF07690 Major Facilitator Superfamily 20 354 4.9E-42 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS04900 ffa5559ee21a8579a97bab39bc64375c 454 SUPERFAMILY SSF103473 6 391 7.85E-64 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS20385 29de3e46a65074b942d185741091d99c 166 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 1.0E-37 T 25-04-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS20385 29de3e46a65074b942d185741091d99c 166 SUPERFAMILY SSF55083 1 159 3.53E-55 T 25-04-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS20385 29de3e46a65074b942d185741091d99c 166 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 3.1E-47 T 25-04-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS20385 29de3e46a65074b942d185741091d99c 166 Gene3D G3DSA:3.30.70.560 3 155 7.1E-59 T 25-04-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS20385 29de3e46a65074b942d185741091d99c 166 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 25-04-2017 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 A4U88_RS18925 ff185e6d58418f8d2f210d4e74bfa7eb 134 Pfam PF07972 NrdI Flavodoxin like 5 124 2.1E-46 T 25-04-2017 IPR004465 Ribonucleotide reductase Class Ib, NrdI A4U88_RS18925 ff185e6d58418f8d2f210d4e74bfa7eb 134 SUPERFAMILY SSF52218 1 132 4.54E-22 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS18925 ff185e6d58418f8d2f210d4e74bfa7eb 134 PIRSF PIRSF005087 1 134 1.0E-53 T 25-04-2017 IPR004465 Ribonucleotide reductase Class Ib, NrdI A4U88_RS18925 ff185e6d58418f8d2f210d4e74bfa7eb 134 Hamap MF_00128 Protein NrdI [nrdI]. 3 133 35.343 T 25-04-2017 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial A4U88_RS18925 ff185e6d58418f8d2f210d4e74bfa7eb 134 Gene3D G3DSA:3.40.50.360 4 133 1.4E-54 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS18925 ff185e6d58418f8d2f210d4e74bfa7eb 134 TIGRFAM TIGR00333 nrdI: nrdI protein 5 132 1.8E-50 T 25-04-2017 IPR004465 Ribonucleotide reductase Class Ib, NrdI A4U88_RS04130 ab0a27d3d7945b226b41b059bac3b888 264 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 8 255 2.2E-95 T 25-04-2017 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 A4U88_RS04130 ab0a27d3d7945b226b41b059bac3b888 264 Pfam PF04205 FMN-binding domain 149 244 1.1E-15 T 25-04-2017 IPR007329 FMN-binding GO:0010181|GO:0016020 A4U88_RS04130 ab0a27d3d7945b226b41b059bac3b888 264 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 8 259 36.659 T 25-04-2017 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 A4U88_RS04130 ab0a27d3d7945b226b41b059bac3b888 264 PIRSF PIRSF009437 1 262 8.8E-104 T 25-04-2017 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 A4U88_RS04130 ab0a27d3d7945b226b41b059bac3b888 264 SMART SM00900 149 247 3.4E-33 T 25-04-2017 IPR007329 FMN-binding GO:0010181|GO:0016020 A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 SMART SM00062 35 258 1.4E-64 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 Gene3D G3DSA:3.40.190.10 114 200 4.5E-16 T 25-04-2017 A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 256 4.1E-58 T 25-04-2017 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 25-04-2017 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 SUPERFAMILY SSF53850 1 257 1.36E-66 T 25-04-2017 A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 Gene3D G3DSA:3.40.190.10 217 258 2.1E-39 T 25-04-2017 A4U88_RS24175 82eacff7b1637d640cf20080b2d6100b 279 Gene3D G3DSA:3.40.190.10 32 113 2.1E-39 T 25-04-2017 A4U88_RS19995 fb0db4e02bca095ca51529337dd9eea2 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 30.581 T 25-04-2017 IPR002930 Glycine cleavage system H-protein A4U88_RS19995 fb0db4e02bca095ca51529337dd9eea2 128 Pfam PF01597 Glycine cleavage H-protein 8 126 1.7E-45 T 25-04-2017 IPR002930 Glycine cleavage system H-protein A4U88_RS19995 fb0db4e02bca095ca51529337dd9eea2 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 126 1.9E-52 T 25-04-2017 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 A4U88_RS19995 fb0db4e02bca095ca51529337dd9eea2 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 25-04-2017 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 A4U88_RS19995 fb0db4e02bca095ca51529337dd9eea2 128 Gene3D G3DSA:2.40.50.100 7 128 1.8E-49 T 25-04-2017 A4U88_RS19995 fb0db4e02bca095ca51529337dd9eea2 128 SUPERFAMILY SSF51230 4 127 5.69E-44 T 25-04-2017 IPR011053 Single hybrid motif A4U88_RS22485 8538e0c422491f54870f0831cdcd0bb1 326 Gene3D G3DSA:3.40.50.1820 42 171 1.4E-28 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS22485 8538e0c422491f54870f0831cdcd0bb1 326 Gene3D G3DSA:3.40.50.1820 247 318 1.4E-28 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS22485 8538e0c422491f54870f0831cdcd0bb1 326 SUPERFAMILY SSF53474 31 299 1.21E-38 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS22485 8538e0c422491f54870f0831cdcd0bb1 326 PIRSF PIRSF005211 1 324 3.9E-102 T 25-04-2017 IPR012020 AB hydrolase 4 family A4U88_RS22485 8538e0c422491f54870f0831cdcd0bb1 326 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 226 267 - T 25-04-2017 IPR000952 AB hydrolase 4, conserved site A4U88_RS22485 8538e0c422491f54870f0831cdcd0bb1 326 Pfam PF00561 alpha/beta hydrolase fold 63 298 3.2E-18 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS13875 80407051ae022f48d97e0b011ce6975b 77 Pfam PF13996 YobH-like protein 4 71 3.2E-35 T 25-04-2017 IPR025611 YobH-like protein A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 Gene3D G3DSA:3.40.190.10 271 297 1.4E-22 T 25-04-2017 A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 Gene3D G3DSA:3.40.190.10 89 171 1.4E-22 T 25-04-2017 A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 SUPERFAMILY SSF53850 89 295 4.34E-36 T 25-04-2017 A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 Gene3D G3DSA:3.40.190.10 172 266 9.8E-25 T 25-04-2017 A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 SUPERFAMILY SSF46785 4 82 4.99E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 Pfam PF03466 LysR substrate binding domain 95 294 2.3E-19 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 Gene3D G3DSA:1.10.10.10 3 84 4.1E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00305 da689031474eefdc2652f8b4bf684539 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.9E-12 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS15060 e0fb11c16f44724c05f4a5fcce8dade7 266 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 4 266 2.5E-91 T 25-04-2017 IPR009228 Capsid scaffolding protein GpO GO:0019069 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 SUPERFAMILY SSF51445 4 468 2.05E-157 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 25-04-2017 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 PRINTS PR00131 Glycosyl hydrolase family 1 signature 437 449 6.0E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 6.0E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 6.0E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 402 6.0E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 PRINTS PR00131 Glycosyl hydrolase family 1 signature 412 429 6.0E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 Pfam PF00232 Glycosyl hydrolase family 1 4 471 1.8E-133 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 Gene3D G3DSA:3.20.20.80 4 471 4.2E-149 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS02355 5b47cc973232b0dd9db9cd23da9cdd5c 471 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 25-04-2017 IPR018120 Glycoside hydrolase family 1, active site A4U88_RS04435 7e56e722ddd40c20fc16016e4aab1155 213 Gene3D G3DSA:3.40.30.10 2 123 2.6E-35 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS04435 7e56e722ddd40c20fc16016e4aab1155 213 Gene3D G3DSA:3.40.30.10 128 206 2.9E-15 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS04435 7e56e722ddd40c20fc16016e4aab1155 213 ProSitePatterns PS00194 Thioredoxin family active site. 46 64 - T 25-04-2017 IPR017937 Thioredoxin, conserved site GO:0045454 A4U88_RS04435 7e56e722ddd40c20fc16016e4aab1155 213 Pfam PF01323 DSBA-like thioredoxin domain 46 200 3.5E-19 T 25-04-2017 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 A4U88_RS04435 7e56e722ddd40c20fc16016e4aab1155 213 SUPERFAMILY SSF52833 27 189 1.1E-33 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS04435 7e56e722ddd40c20fc16016e4aab1155 213 PIRSF PIRSF001488 5 212 2.2E-57 T 25-04-2017 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL A4U88_RS13480 a674c18585e682ae4d45bdae7ccd94fb 231 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 230 4.6E-73 T 25-04-2017 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 A4U88_RS13480 a674c18585e682ae4d45bdae7ccd94fb 231 SUPERFAMILY SSF63848 125 230 3.79E-31 T 25-04-2017 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 A4U88_RS13480 a674c18585e682ae4d45bdae7ccd94fb 231 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 4.3E-35 T 25-04-2017 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 A4U88_RS13480 a674c18585e682ae4d45bdae7ccd94fb 231 Gene3D G3DSA:2.160.20.70 117 230 3.6E-38 T 25-04-2017 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 A4U88_RS13480 a674c18585e682ae4d45bdae7ccd94fb 231 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 127 227 9.0E-31 T 25-04-2017 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 A4U88_RS13480 a674c18585e682ae4d45bdae7ccd94fb 231 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 231 29.003 T 25-04-2017 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 A4U88_RS22870 5c2324b044d1b2e51de501603537e5c5 438 PIRSF PIRSF002746 1 438 6.9E-159 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS22870 5c2324b044d1b2e51de501603537e5c5 438 Pfam PF02447 GntP family permease 1 436 2.6E-181 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS22870 5c2324b044d1b2e51de501603537e5c5 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 4.5E-196 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS22430 62f13dfd8ab74574feb5a95ecab11743 195 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 6.4E-9 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS22430 62f13dfd8ab74574feb5a95ecab11743 195 Gene3D G3DSA:3.10.50.40 122 142 4.3E-16 T 25-04-2017 A4U88_RS22430 62f13dfd8ab74574feb5a95ecab11743 195 Gene3D G3DSA:3.10.50.40 2 69 4.3E-16 T 25-04-2017 A4U88_RS22430 62f13dfd8ab74574feb5a95ecab11743 195 SUPERFAMILY SSF54534 2 140 1.1E-33 T 25-04-2017 A4U88_RS04625 65cdd08cf7acebf93fffe51fa5ec44f3 133 SUPERFAMILY SSF54427 42 113 1.1E-6 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS04625 65cdd08cf7acebf93fffe51fa5ec44f3 133 Pfam PF12680 SnoaL-like domain 22 110 1.6E-6 T 25-04-2017 IPR009959 Polyketide cyclase SnoaL-like domain A4U88_RS04625 65cdd08cf7acebf93fffe51fa5ec44f3 133 Gene3D G3DSA:3.10.450.50 39 116 5.0E-7 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS21245 a65ff0ff7e8c7de174e69bb268cb43c5 196 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 196 61.064 T 25-04-2017 IPR023070 DnaA initiator-associating protein A4U88_RS21245 a65ff0ff7e8c7de174e69bb268cb43c5 196 Pfam PF13580 SIS domain 9 144 3.3E-33 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS21245 a65ff0ff7e8c7de174e69bb268cb43c5 196 SUPERFAMILY SSF53697 3 191 2.63E-50 T 25-04-2017 A4U88_RS21245 a65ff0ff7e8c7de174e69bb268cb43c5 196 Gene3D G3DSA:3.40.50.10490 3 191 8.6E-55 T 25-04-2017 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 Pfam PF00797 N-acetyltransferase 19 253 1.6E-69 T 25-04-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 Gene3D G3DSA:3.30.2140.10 182 253 1.9E-54 T 25-04-2017 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 Gene3D G3DSA:3.30.2140.10 2 83 1.9E-54 T 25-04-2017 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 19 42 4.0E-17 T 25-04-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 43 66 4.0E-17 T 25-04-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 67 89 4.0E-17 T 25-04-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 PRINTS PR01543 Arylamine N-acetyltransferase signature 99 124 4.0E-17 T 25-04-2017 IPR001447 Arylamine N-acetyltransferase GO:0008152|GO:0016407 KEGG: 00232+2.3.1.5|KEGG: 00633+2.3.1.5|KEGG: 00983+2.3.1.5|Reactome: R-HSA-156582 A4U88_RS06405 488bc953d95c93f756f4db90ad2993f6 254 SUPERFAMILY SSF54001 2 253 1.16E-75 T 25-04-2017 A4U88_RS04045 bd5ac41ab282a42064641c464761815b 247 SMART SM00382 28 215 1.5E-16 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS04045 bd5ac41ab282a42064641c464761815b 247 Pfam PF00005 ABC transporter 19 167 1.7E-36 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS04045 bd5ac41ab282a42064641c464761815b 247 Gene3D G3DSA:3.40.50.300 1 238 1.7E-83 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04045 bd5ac41ab282a42064641c464761815b 247 SUPERFAMILY SSF52540 3 236 6.01E-78 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS04045 bd5ac41ab282a42064641c464761815b 247 PIRSF PIRSF039085 1 243 6.3E-111 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS04045 bd5ac41ab282a42064641c464761815b 247 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PIRSF PIRSF006431 2 317 4.0E-143 T 25-04-2017 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 Pfam PF00561 alpha/beta hydrolase fold 41 296 8.9E-32 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 1.8E-6 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 1.8E-6 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 1.8E-6 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 8.5E-14 T 25-04-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 8.5E-14 T 25-04-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 8.5E-14 T 25-04-2017 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 13 314 2.5E-126 T 25-04-2017 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 SUPERFAMILY SSF53474 7 313 1.77E-60 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS09420 69a6d49325f677402eaadcd78ae59298 317 Gene3D G3DSA:3.40.50.1820 12 299 1.1E-75 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS05205 34873a88a04582509ed9dad75effb259 421 Pfam PF02447 GntP family permease 9 414 4.5E-23 T 25-04-2017 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 A4U88_RS15250 3f13c497d71d8f6f8f50ce18357a0441 297 Pfam PF11004 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase 24 296 2.9E-112 T 25-04-2017 IPR021266 Kdo hydroxylase A4U88_RS14510 b7d25bcf0825b6f41ff76557a3658587 77 SUPERFAMILY SSF89447 5 67 3.45E-6 T 25-04-2017 A4U88_RS14510 b7d25bcf0825b6f41ff76557a3658587 77 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 7 45 3.0E-6 T 25-04-2017 IPR007159 SpoVT-AbrB domain GO:0003677 A4U88_RS08350 6510cc6f73807a1d57d6c32d6a335ded 468 SMART SM01150 13 414 1.1E-231 T 25-04-2017 IPR009770 Domain of unknown function DUF1338 A4U88_RS08350 6510cc6f73807a1d57d6c32d6a335ded 468 Pfam PF07063 Domain of unknown function (DUF1338) 11 414 2.0E-119 T 25-04-2017 IPR009770 Domain of unknown function DUF1338 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Gene3D G3DSA:3.50.50.60 2 57 1.0E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Gene3D G3DSA:3.50.50.60 146 208 1.0E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Gene3D G3DSA:3.50.50.60 316 370 1.0E-48 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 77.049 T 25-04-2017 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 SUPERFAMILY SSF54373 214 313 5.49E-20 T 25-04-2017 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 SUPERFAMILY SSF51905 313 370 9.06E-43 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 SUPERFAMILY SSF51905 2 216 9.06E-43 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Gene3D G3DSA:3.30.9.10 59 145 1.9E-52 T 25-04-2017 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Gene3D G3DSA:3.30.9.10 211 313 1.9E-52 T 25-04-2017 A4U88_RS09135 d080c22ddd89bfa7abf4c51819d4daea 371 Pfam PF01266 FAD dependent oxidoreductase 4 350 6.2E-43 T 25-04-2017 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 A4U88_RS09770 0850a0f7c4927427b19040ac37245c7d 415 Pfam PF12704 MacB-like periplasmic core domain 28 239 4.1E-14 T 25-04-2017 IPR025857 MacB-like periplasmic core domain A4U88_RS09770 0850a0f7c4927427b19040ac37245c7d 415 Pfam PF02687 FtsX-like permease family 275 408 1.1E-20 T 25-04-2017 IPR003838 ABC transporter permease protein domain GO:0016020 A4U88_RS09770 0850a0f7c4927427b19040ac37245c7d 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 6 414 3.3E-158 T 25-04-2017 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 A4U88_RS09770 0850a0f7c4927427b19040ac37245c7d 415 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 5 415 2.7E-220 T 25-04-2017 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0006810|GO:0009276|GO:0016021 A4U88_RS09320 2add1882149790a756c8efc95836d912 159 Gene3D G3DSA:1.10.10.10 2 142 9.1E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09320 2add1882149790a756c8efc95836d912 159 Pfam PF02082 Transcriptional regulator 4 83 1.2E-15 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS09320 2add1882149790a756c8efc95836d912 159 SUPERFAMILY SSF46785 1 135 4.99E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05490 e137444ac468f76fce081f4321a06198 189 SUPERFAMILY SSF52218 3 178 3.86E-42 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS05490 e137444ac468f76fce081f4321a06198 189 Pfam PF03358 NADPH-dependent FMN reductase 3 150 1.7E-29 T 25-04-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 A4U88_RS05490 e137444ac468f76fce081f4321a06198 189 Gene3D G3DSA:3.40.50.360 2 183 4.3E-47 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS01555 79a62dc3923b268a7c8421efb205cf21 43 Pfam PF08085 Entericidin EcnA/B family 22 42 3.9E-10 T 25-04-2017 IPR012556 Entericidin A/B GO:0009636|GO:0016020 A4U88_RS01600 67584d62d0b71f3b3c94829ed8a98adc 297 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 49 284 2.8E-92 T 25-04-2017 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 A4U88_RS01600 67584d62d0b71f3b3c94829ed8a98adc 297 Pfam PF02666 Phosphatidylserine decarboxylase 63 284 7.4E-59 T 25-04-2017 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 A4U88_RS01600 67584d62d0b71f3b3c94829ed8a98adc 297 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 287 48.783 T 25-04-2017 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 A4U88_RS21305 4967b46702077351b0e8cd6bc2bff9d0 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 25-04-2017 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 A4U88_RS21305 4967b46702077351b0e8cd6bc2bff9d0 130 SUPERFAMILY SSF54211 5 130 2.69E-49 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS21305 4967b46702077351b0e8cd6bc2bff9d0 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.979 T 25-04-2017 IPR023035 Ribosomal protein S9, bacterial/plastid A4U88_RS21305 4967b46702077351b0e8cd6bc2bff9d0 130 Gene3D G3DSA:3.30.230.10 4 130 6.2E-51 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS21305 4967b46702077351b0e8cd6bc2bff9d0 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 4.9E-48 T 25-04-2017 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 A4U88_RS14675 590541c9731a01b37da701a960ecb5e9 501 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 19 493 9.4E-225 T 25-04-2017 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath A4U88_RS14675 590541c9731a01b37da701a960ecb5e9 501 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 69 493 1.4E-193 T 25-04-2017 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath A4U88_RS07225 af9d3ca5f1d0c8c3b31beae3c7e498db 183 SUPERFAMILY SSF52540 2 104 6.24E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07225 af9d3ca5f1d0c8c3b31beae3c7e498db 183 Pfam PF01202 Shikimate kinase 9 35 5.9E-5 T 25-04-2017 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 A4U88_RS07225 af9d3ca5f1d0c8c3b31beae3c7e498db 183 Gene3D G3DSA:3.40.50.300 2 130 2.7E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03645 3426a1b7fc8ed72c8ecb91a7cefd5861 108 Pfam PF04977 Septum formation initiator 11 89 4.7E-31 T 25-04-2017 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 A4U88_RS03645 3426a1b7fc8ed72c8ecb91a7cefd5861 108 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 36.948 T 25-04-2017 IPR023081 Cell division protein FtsB A4U88_RS00860 19012e13690888a9ab2bdb3a0408dc20 130 SUPERFAMILY SSF55729 15 126 2.75E-10 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS00860 19012e13690888a9ab2bdb3a0408dc20 130 Pfam PF12568 Acetyltransferase (GNAT) domain 2 129 1.1E-53 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS00860 19012e13690888a9ab2bdb3a0408dc20 130 Hamap MF_02018 PanD maturation factor [panM]. 1 130 33.457 T 25-04-2017 IPR032900 PanD maturation factor PanM GO:0015940|GO:0031638 A4U88_RS00860 19012e13690888a9ab2bdb3a0408dc20 130 Gene3D G3DSA:3.40.630.30 23 125 4.5E-10 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS10350 05af2058f509e174faf1c9a9821b0630 267 Gene3D G3DSA:1.10.3720.10 14 263 1.1E-42 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10350 05af2058f509e174faf1c9a9821b0630 267 SUPERFAMILY SSF161098 18 254 4.25E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10350 05af2058f509e174faf1c9a9821b0630 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 262 5.5E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13425 551bb3720b424bd554db92f10384b712 105 SUPERFAMILY SSF54909 1 98 3.34E-13 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS13425 551bb3720b424bd554db92f10384b712 105 Gene3D G3DSA:3.30.70.900 1 91 2.5E-10 T 25-04-2017 A4U88_RS13425 551bb3720b424bd554db92f10384b712 105 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 62 8.4E-8 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS12395 29859f9c0351c813ddf2ba254eed443f 278 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 144 157 2.9E-13 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS12395 29859f9c0351c813ddf2ba254eed443f 278 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 117 134 2.9E-13 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS12395 29859f9c0351c813ddf2ba254eed443f 278 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 67 78 2.9E-13 T 25-04-2017 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 A4U88_RS12395 29859f9c0351c813ddf2ba254eed443f 278 Gene3D G3DSA:3.40.710.10 20 275 1.6E-62 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS12395 29859f9c0351c813ddf2ba254eed443f 278 SUPERFAMILY SSF56601 14 272 2.02E-55 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS12395 29859f9c0351c813ddf2ba254eed443f 278 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 32 260 1.3E-58 T 25-04-2017 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 SUPERFAMILY SSF47090 298 341 5.89E-9 T 25-04-2017 IPR002477 Peptidoglycan binding-like A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 Pfam PF03734 L,D-transpeptidase catalytic domain 363 530 1.0E-28 T 25-04-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 Pfam PF01471 Putative peptidoglycan binding domain 300 334 9.0E-6 T 25-04-2017 IPR002477 Peptidoglycan binding-like A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 SUPERFAMILY SSF141523 361 414 1.19E-19 T 25-04-2017 A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 SUPERFAMILY SSF141523 471 520 1.19E-19 T 25-04-2017 A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 Gene3D G3DSA:1.10.101.10 207 242 8.1E-20 T 25-04-2017 IPR002477 Peptidoglycan binding-like A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 Gene3D G3DSA:1.10.101.10 300 342 8.1E-20 T 25-04-2017 IPR002477 Peptidoglycan binding-like A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 Gene3D G3DSA:2.40.440.10 473 521 1.5E-13 T 25-04-2017 A4U88_RS08410 43a3b38fc45d049ddbade12d6cb58b45 602 Gene3D G3DSA:2.40.440.10 358 405 1.5E-13 T 25-04-2017 A4U88_RS10470 3ef51a440676b19a5c7a06545dd21da3 228 Pfam PF01914 MarC family integral membrane protein 8 221 2.1E-64 T 25-04-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 A4U88_RS10470 3ef51a440676b19a5c7a06545dd21da3 228 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 9 217 2.1E-34 T 25-04-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 A4U88_RS06415 8822f9530fcfce1b7522236b17c0829f 310 Pfam PF03547 Membrane transport protein 162 299 8.5E-12 T 25-04-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 A4U88_RS01715 f80680b864399bee992a842fdb03b6a6 107 Pfam PF07338 Protein of unknown function (DUF1471) 52 106 5.1E-13 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS01715 f80680b864399bee992a842fdb03b6a6 107 Gene3D G3DSA:3.30.1660.10 47 106 4.4E-12 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS01715 f80680b864399bee992a842fdb03b6a6 107 SUPERFAMILY SSF159871 23 106 8.63E-15 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS03820 caf0bbf0fa90c3e1b62bacfe04852b80 263 Pfam PF01578 Cytochrome C assembly protein 37 260 1.1E-43 T 25-04-2017 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 A4U88_RS06320 e782bdc6628d8db31ec66a6c3ec98ce5 155 Gene3D G3DSA:3.90.1170.40 3 150 5.1E-57 T 25-04-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS06320 e782bdc6628d8db31ec66a6c3ec98ce5 155 SUPERFAMILY SSF54690 5 150 1.57E-54 T 25-04-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS06320 e782bdc6628d8db31ec66a6c3ec98ce5 155 Pfam PF02391 MoaE protein 10 121 2.9E-36 T 25-04-2017 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 A4U88_RS13690 6ade31eedc578a7ee05061c3d12b7ac5 215 SUPERFAMILY SSF46785 90 172 4.13E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13690 6ade31eedc578a7ee05061c3d12b7ac5 215 SUPERFAMILY SSF46785 2 84 5.71E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13690 6ade31eedc578a7ee05061c3d12b7ac5 215 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 210 34.813 T 25-04-2017 IPR007432 Protein of unknown function DUF480 A4U88_RS13690 6ade31eedc578a7ee05061c3d12b7ac5 215 Gene3D G3DSA:1.10.10.10 95 172 9.6E-37 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13690 6ade31eedc578a7ee05061c3d12b7ac5 215 Pfam PF04337 Protein of unknown function, DUF480 5 158 1.5E-64 T 25-04-2017 IPR007432 Protein of unknown function DUF480 A4U88_RS13690 6ade31eedc578a7ee05061c3d12b7ac5 215 Gene3D G3DSA:1.10.10.10 3 87 7.2E-38 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS02145 79b2609929bfb3b1c677e8ce2caca4a3 95 Gene3D G3DSA:1.20.5.780 2 39 1.0E-4 T 25-04-2017 A4U88_RS02145 79b2609929bfb3b1c677e8ce2caca4a3 95 Pfam PF04221 RelB antitoxin 4 46 1.3E-5 T 25-04-2017 IPR007337 RelB antitoxin/Antitoxin DinJ A4U88_RS17745 64f7178924ba9f8209b74185508efb1f 108 TIGRFAM TIGR01594 holin_lambda: phage holin, lambda family 5 104 3.6E-23 T 25-04-2017 IPR006481 Bacteriophage lambda, GpS, holin A4U88_RS17745 64f7178924ba9f8209b74185508efb1f 108 Pfam PF05106 Phage holin family (Lysis protein S) 5 101 2.9E-27 T 25-04-2017 IPR006481 Bacteriophage lambda, GpS, holin A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 2 427 7.3E-215 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 Pfam PF02040 Arsenical pump membrane protein 5 423 3.9E-160 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS14895 220822a1bf601a4856bbba142dd09239 429 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 2.6E-120 T 25-04-2017 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 A4U88_RS02695 407a58dbfffa17637ac347b0b61fae1f 128 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 124 1.1E-25 T 25-04-2017 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 A4U88_RS02695 407a58dbfffa17637ac347b0b61fae1f 128 SUPERFAMILY SSF55331 2 125 7.94E-45 T 25-04-2017 IPR014347 Tautomerase/MIF superfamily A4U88_RS02695 407a58dbfffa17637ac347b0b61fae1f 128 Gene3D G3DSA:3.30.429.10 1 126 3.6E-49 T 25-04-2017 A4U88_RS12080 fb07e568fe5d6be8697da1dfa74a6b77 372 Gene3D G3DSA:1.20.1250.20 6 178 2.9E-19 T 25-04-2017 A4U88_RS12080 fb07e568fe5d6be8697da1dfa74a6b77 372 Gene3D G3DSA:1.20.1250.20 199 369 1.2E-10 T 25-04-2017 A4U88_RS12080 fb07e568fe5d6be8697da1dfa74a6b77 372 Pfam PF07690 Major Facilitator Superfamily 7 337 6.5E-31 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS12080 fb07e568fe5d6be8697da1dfa74a6b77 372 SUPERFAMILY SSF103473 4 370 1.7E-38 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS16955 17b085a0ae4dbc64d723ce15f1600c46 183 Gene3D G3DSA:3.60.21.10 1 175 2.1E-48 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS16955 17b085a0ae4dbc64d723ce15f1600c46 183 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 167 7.5E-42 T 25-04-2017 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 A4U88_RS16955 17b085a0ae4dbc64d723ce15f1600c46 183 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 161 5.2E-26 T 25-04-2017 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 A4U88_RS16955 17b085a0ae4dbc64d723ce15f1600c46 183 ProSitePatterns PS01269 Uncharacterized protein family UPF0025 signature. 120 144 - T 25-04-2017 IPR020935 Phosphodiesterase YfcE, conserved site A4U88_RS16955 17b085a0ae4dbc64d723ce15f1600c46 183 SUPERFAMILY SSF56300 1 167 7.9E-39 T 25-04-2017 IPR029052 Metallo-dependent phosphatase-like A4U88_RS10900 4c2aa9d9c21177fc856233a925cd40ff 201 Gene3D G3DSA:3.40.30.10 1 88 7.7E-28 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10900 4c2aa9d9c21177fc856233a925cd40ff 201 Gene3D G3DSA:1.20.1050.10 89 188 2.4E-39 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS10900 4c2aa9d9c21177fc856233a925cd40ff 201 SUPERFAMILY SSF47616 81 199 6.42E-30 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS10900 4c2aa9d9c21177fc856233a925cd40ff 201 Pfam PF02798 Glutathione S-transferase, N-terminal domain 8 74 1.2E-11 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS10900 4c2aa9d9c21177fc856233a925cd40ff 201 SUPERFAMILY SSF52833 1 85 3.66E-19 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS10900 4c2aa9d9c21177fc856233a925cd40ff 201 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 189 2.7E-18 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 Pfam PF01197 Ribosomal protein L31 1 64 3.7E-30 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 SUPERFAMILY SSF143800 1 66 6.28E-27 T 25-04-2017 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 2.1E-22 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.1E-22 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 2.1E-22 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.999 T 25-04-2017 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 5.3E-34 T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS23525 b2609851e3fced8cd1a16f3e9fe9ea32 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 25-04-2017 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS13660 f1bb2713b7a3bf0db2cbb3b280f0599e 252 Gene3D G3DSA:3.20.20.380 1 243 8.3E-91 T 25-04-2017 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 A4U88_RS13660 f1bb2713b7a3bf0db2cbb3b280f0599e 252 Pfam PF03932 CutC family 3 199 1.1E-72 T 25-04-2017 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 A4U88_RS13660 f1bb2713b7a3bf0db2cbb3b280f0599e 252 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 243 39.288 T 25-04-2017 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 A4U88_RS13660 f1bb2713b7a3bf0db2cbb3b280f0599e 252 SUPERFAMILY SSF110395 2 243 1.28E-77 T 25-04-2017 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 TIGRFAM TIGR00861 MIP: MIP family channel proteins 7 223 9.6E-64 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 SUPERFAMILY SSF81338 3 228 4.19E-69 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 ProSitePatterns PS00221 MIP family signature. 61 69 - T 25-04-2017 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 Pfam PF00230 Major intrinsic protein 3 223 5.1E-53 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 PRINTS PR00783 Major intrinsic protein family signature 43 67 3.2E-52 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 PRINTS PR00783 Major intrinsic protein family signature 3 22 3.2E-52 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 PRINTS PR00783 Major intrinsic protein family signature 137 155 3.2E-52 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 PRINTS PR00783 Major intrinsic protein family signature 80 99 3.2E-52 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 PRINTS PR00783 Major intrinsic protein family signature 167 189 3.2E-52 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 PRINTS PR00783 Major intrinsic protein family signature 206 226 3.2E-52 T 25-04-2017 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-432047 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 Hamap MF_01146 Aquaporin Z [aqpZ]. 2 230 36.057 T 25-04-2017 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 A4U88_RS04565 4c3c9528d9950d145278b7c48585dfe8 231 Gene3D G3DSA:1.20.1080.10 3 229 1.6E-70 T 25-04-2017 IPR023271 Aquaporin-like Reactome: R-HSA-432047 A4U88_RS07080 9ead8e77c615fedf6cea4e1c0247893e 130 Pfam PF14552 Tautomerase enzyme 38 119 2.6E-26 T 25-04-2017 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 A4U88_RS07080 9ead8e77c615fedf6cea4e1c0247893e 130 SUPERFAMILY SSF55331 2 127 1.22E-36 T 25-04-2017 IPR014347 Tautomerase/MIF superfamily A4U88_RS07080 9ead8e77c615fedf6cea4e1c0247893e 130 Gene3D G3DSA:3.30.429.10 4 126 5.5E-36 T 25-04-2017 A4U88_RS06325 6a1ea37d3ccbbc7ccf5706e04c68ddab 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 232 9.1E-61 T 25-04-2017 A4U88_RS15395 ee1e987bab663d3dfb66c3232f77385b 477 TIGRFAM TIGR00797 matE: MATE efflux family protein 37 441 1.1E-65 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS15395 ee1e987bab663d3dfb66c3232f77385b 477 Pfam PF01554 MatE 267 427 8.5E-20 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS15395 ee1e987bab663d3dfb66c3232f77385b 477 Pfam PF01554 MatE 37 197 2.1E-34 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS15395 ee1e987bab663d3dfb66c3232f77385b 477 PIRSF PIRSF006603 19 476 5.5E-70 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS20940 921181042ead3b66f01232a9b9588c71 220 Pfam PF06693 Protein of unknown function (DUF1190) 41 205 6.8E-59 T 25-04-2017 IPR009576 Biofilm formation YgiB A4U88_RS20940 921181042ead3b66f01232a9b9588c71 220 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 220 37.749 T 25-04-2017 IPR009576 Biofilm formation YgiB A4U88_RS09755 e64b6cd3b92ed33871b3f6ff2edf5baf 201 SUPERFAMILY SSF51161 71 181 8.73E-41 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS09755 e64b6cd3b92ed33871b3f6ff2edf5baf 201 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 85 120 6.2E-6 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS09755 e64b6cd3b92ed33871b3f6ff2edf5baf 201 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 130 163 3.1E-10 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS09755 e64b6cd3b92ed33871b3f6ff2edf5baf 201 Gene3D G3DSA:2.160.10.10 80 184 2.2E-31 T 25-04-2017 A4U88_RS09755 e64b6cd3b92ed33871b3f6ff2edf5baf 201 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS01765 d625fd762eed234250f066160bf92574 224 Pfam PF04225 Opacity-associated protein A LysM-like domain 139 224 1.2E-32 T 25-04-2017 IPR007340 Opacity-associated protein A A4U88_RS01765 d625fd762eed234250f066160bf92574 224 Pfam PF08525 Opacity-associated protein A N-terminal motif 72 99 6.8E-9 T 25-04-2017 IPR013731 Opacity-associated protein A, N-terminal A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Pfam PF01103 Surface antigen 448 808 9.1E-101 T 25-04-2017 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Pfam PF07244 Surface antigen variable number repeat 348 421 4.3E-15 T 25-04-2017 IPR010827 Surface antigen variable number GO:0019867 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Pfam PF07244 Surface antigen variable number repeat 176 263 6.8E-16 T 25-04-2017 IPR010827 Surface antigen variable number GO:0019867 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Pfam PF07244 Surface antigen variable number repeat 266 344 1.9E-11 T 25-04-2017 IPR010827 Surface antigen variable number GO:0019867 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Pfam PF07244 Surface antigen variable number repeat 92 172 1.0E-10 T 25-04-2017 IPR010827 Surface antigen variable number GO:0019867 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 PIRSF PIRSF006076 1 808 8.5E-257 T 25-04-2017 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 808 26.216 T 25-04-2017 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 808 1.2E-287 T 25-04-2017 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Gene3D G3DSA:2.40.160.50 703 805 1.4E-23 T 25-04-2017 A4U88_RS19235 0c90b88e2e7bcf54062c4bcef8565b45 808 Gene3D G3DSA:2.40.160.50 381 668 1.4E-23 T 25-04-2017 A4U88_RS03650 fcc46f20f97ae1ba84fac06e8864ef2d 235 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 105 112 - T 25-04-2017 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 A4U88_RS03650 fcc46f20f97ae1ba84fac06e8864ef2d 235 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 10 233 30.404 T 25-04-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 A4U88_RS03650 fcc46f20f97ae1ba84fac06e8864ef2d 235 Gene3D G3DSA:3.90.550.10 10 232 5.4E-76 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS03650 fcc46f20f97ae1ba84fac06e8864ef2d 235 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 12 229 5.9E-73 T 25-04-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 A4U88_RS03650 fcc46f20f97ae1ba84fac06e8864ef2d 235 SUPERFAMILY SSF53448 11 230 1.13E-58 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS03650 fcc46f20f97ae1ba84fac06e8864ef2d 235 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 11 232 4.1E-82 T 25-04-2017 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 25-04-2017 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 SMART SM00411 1 90 2.5E-44 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 Gene3D G3DSA:4.10.520.10 1 90 1.0E-36 T 25-04-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.9E-32 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.6E-20 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.6E-20 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.6E-20 T 25-04-2017 IPR000119 Histone-like DNA-binding protein GO:0003677 A4U88_RS04965 9d9014bfc1a3fb3d41cb960fa1cbfb30 90 SUPERFAMILY SSF47729 1 90 4.12E-32 T 25-04-2017 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 A4U88_RS07040 627781a8d2bf1139a95b41b9fbedc248 484 Gene3D G3DSA:1.20.1250.20 272 461 0.001 T 25-04-2017 A4U88_RS07040 627781a8d2bf1139a95b41b9fbedc248 484 Gene3D G3DSA:1.20.1250.20 22 201 1.4E-23 T 25-04-2017 A4U88_RS07040 627781a8d2bf1139a95b41b9fbedc248 484 Pfam PF07690 Major Facilitator Superfamily 25 402 1.4E-30 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS07040 627781a8d2bf1139a95b41b9fbedc248 484 SUPERFAMILY SSF103473 6 200 6.8E-39 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS07040 627781a8d2bf1139a95b41b9fbedc248 484 SUPERFAMILY SSF103473 249 460 6.8E-39 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS02150 b8fd838cba0e700b4b5e25190b4ace6a 91 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 89 6.5E-15 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS02150 b8fd838cba0e700b4b5e25190b4ace6a 91 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 89 6.5E-11 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS13980 02edf1297524ce5ee7947ce0b58f98b9 551 SUPERFAMILY SSF53850 45 539 9.59E-114 T 25-04-2017 A4U88_RS13980 02edf1297524ce5ee7947ce0b58f98b9 551 Gene3D G3DSA:3.90.76.10 59 220 6.2E-36 T 25-04-2017 A4U88_RS13980 02edf1297524ce5ee7947ce0b58f98b9 551 PIRSF PIRSF002741 5 541 3.2E-99 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS13980 02edf1297524ce5ee7947ce0b58f98b9 551 Gene3D G3DSA:3.10.105.10 322 518 6.6E-53 T 25-04-2017 A4U88_RS13980 02edf1297524ce5ee7947ce0b58f98b9 551 Gene3D G3DSA:3.40.190.10 221 321 1.6E-25 T 25-04-2017 A4U88_RS13980 02edf1297524ce5ee7947ce0b58f98b9 551 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 90 461 6.4E-77 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS07700 5bbdd85ef33aea070e1075f4bc6f9b80 361 Pfam PF00534 Glycosyl transferases group 1 186 316 3.1E-25 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS07700 5bbdd85ef33aea070e1075f4bc6f9b80 361 SUPERFAMILY SSF53756 11 360 1.82E-67 T 25-04-2017 A4U88_RS07700 5bbdd85ef33aea070e1075f4bc6f9b80 361 Pfam PF13439 Glycosyltransferase Family 4 12 173 3.7E-19 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS07700 5bbdd85ef33aea070e1075f4bc6f9b80 361 Gene3D G3DSA:3.40.50.2000 187 320 5.4E-25 T 25-04-2017 A4U88_RS08010 af1123b5298e4e30432bf8898b8f3f89 201 SUPERFAMILY SSF48317 1 176 6.93E-34 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS08010 af1123b5298e4e30432bf8898b8f3f89 201 Pfam PF01569 PAP2 superfamily 65 168 1.9E-13 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS08010 af1123b5298e4e30432bf8898b8f3f89 201 SMART SM00014 60 168 3.6E-22 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS08010 af1123b5298e4e30432bf8898b8f3f89 201 Gene3D G3DSA:1.20.144.10 3 169 1.3E-23 T 25-04-2017 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 43.345 T 25-04-2017 IPR011140 Autonomous glycyl radical cofactor GrcA A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 Gene3D G3DSA:3.20.70.20 31 126 6.8E-36 T 25-04-2017 A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 Pfam PF01228 Glycine radical 13 108 2.1E-24 T 25-04-2017 IPR001150 Glycine radical domain GO:0003824|GO:0008152 A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 8.6E-74 T 25-04-2017 IPR011140 Autonomous glycyl radical cofactor GrcA A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 SUPERFAMILY SSF51998 41 125 1.01E-24 T 25-04-2017 A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 PIRSF PIRSF000378 2 127 7.7E-56 T 25-04-2017 IPR011140 Autonomous glycyl radical cofactor GrcA A4U88_RS18700 c3c33afbc363be436374aaa944853d70 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 25-04-2017 IPR019777 Formate C-acetyltransferase glycine radical, conserved site A4U88_RS12800 8aadef268201719b9438e1128c1db0da 175 SUPERFAMILY SSF54593 23 172 1.75E-37 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS12800 8aadef268201719b9438e1128c1db0da 175 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 25 167 4.0E-20 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS12800 8aadef268201719b9438e1128c1db0da 175 Gene3D G3DSA:3.10.180.10 11 173 5.8E-58 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS12800 8aadef268201719b9438e1128c1db0da 175 ProSitePatterns PS00934 Glyoxalase I signature 1. 27 48 - T 25-04-2017 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 A4U88_RS12800 8aadef268201719b9438e1128c1db0da 175 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 14 172 7.5E-40 T 25-04-2017 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 A4U88_RS19305 77adbbbcb2cbb1704d3c8c98bb594cdc 256 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 25-04-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS19305 77adbbbcb2cbb1704d3c8c98bb594cdc 256 Pfam PF00849 RNA pseudouridylate synthase 10 170 9.4E-35 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS19305 77adbbbcb2cbb1704d3c8c98bb594cdc 256 SUPERFAMILY SSF55120 3 236 1.12E-65 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS07515 d59e07d3288feb2f0022dde2a6a0b548 306 SUPERFAMILY SSF161098 91 289 6.28E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07515 d59e07d3288feb2f0022dde2a6a0b548 306 Gene3D G3DSA:1.10.3720.10 89 301 8.7E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS07515 d59e07d3288feb2f0022dde2a6a0b548 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 304 2.0E-40 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS21920 b52d1cb8f435183a7ec2e66829ab759d 290 Pfam PF01040 UbiA prenyltransferase family 28 270 1.7E-67 T 25-04-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 A4U88_RS21920 b52d1cb8f435183a7ec2e66829ab759d 290 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 288 3.0E-111 T 25-04-2017 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 A4U88_RS21920 b52d1cb8f435183a7ec2e66829ab759d 290 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.421 T 25-04-2017 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 A4U88_RS10235 e74c6370991c5baee41cdceefa6c1116 79 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 3 78 3.0E-27 T 25-04-2017 IPR009950 Protein of unknown function DUF1480 A4U88_RS10235 e74c6370991c5baee41cdceefa6c1116 79 Pfam PF07351 Protein of unknown function (DUF1480) 1 78 3.8E-42 T 25-04-2017 IPR009950 Protein of unknown function DUF1480 A4U88_RS12320 f8781c2b86aae12f82b93f6aa67ab8c7 239 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 16 220 8.6E-17 T 25-04-2017 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 A4U88_RS12320 f8781c2b86aae12f82b93f6aa67ab8c7 239 SUPERFAMILY SSF100950 1 238 5.23E-52 T 25-04-2017 A4U88_RS12320 f8781c2b86aae12f82b93f6aa67ab8c7 239 Gene3D G3DSA:3.40.50.1360 1 238 3.7E-52 T 25-04-2017 A4U88_RS04905 2b100c77f2b6ddd797f1f8197402ccb8 296 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 25-04-2017 IPR030470 UbiA prenyltransferase conserved site A4U88_RS04905 2b100c77f2b6ddd797f1f8197402ccb8 296 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 281 2.5E-92 T 25-04-2017 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 A4U88_RS04905 2b100c77f2b6ddd797f1f8197402ccb8 296 Pfam PF01040 UbiA prenyltransferase family 18 266 1.1E-60 T 25-04-2017 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 A4U88_RS04905 2b100c77f2b6ddd797f1f8197402ccb8 296 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 18.198 T 25-04-2017 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 A4U88_RS21770 6d619179f69e1e68fa3376414eda1c59 222 Gene3D G3DSA:3.40.30.10 4 88 9.8E-22 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21770 6d619179f69e1e68fa3376414eda1c59 222 SUPERFAMILY SSF52833 2 78 5.3E-21 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS21770 6d619179f69e1e68fa3376414eda1c59 222 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 5.4E-17 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS21770 6d619179f69e1e68fa3376414eda1c59 222 Pfam PF14497 Glutathione S-transferase, C-terminal domain 139 209 1.1E-7 T 25-04-2017 IPR004046 Glutathione S-transferase, C-terminal A4U88_RS21770 6d619179f69e1e68fa3376414eda1c59 222 Gene3D G3DSA:1.20.1050.10 89 216 4.6E-23 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS21770 6d619179f69e1e68fa3376414eda1c59 222 SUPERFAMILY SSF47616 83 217 1.38E-24 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS03960 aad0ea5d780f93c8f281ce3e5f4b9a3a 264 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 45 248 3.1E-7 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS03960 aad0ea5d780f93c8f281ce3e5f4b9a3a 264 SUPERFAMILY SSF56219 40 255 7.33E-25 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS03960 aad0ea5d780f93c8f281ce3e5f4b9a3a 264 Gene3D G3DSA:3.60.10.10 40 258 4.0E-6 T 25-04-2017 IPR005135 Endonuclease/exonuclease/phosphatase A4U88_RS19155 212111be03477d3a910ca724e3993b42 104 SUPERFAMILY SSF46626 7 103 6.3E-23 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19155 212111be03477d3a910ca724e3993b42 104 PRINTS PR00605 Class IC cytochrome C signature 77 99 9.9E-6 T 25-04-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 A4U88_RS19155 212111be03477d3a910ca724e3993b42 104 PRINTS PR00605 Class IC cytochrome C signature 32 43 9.9E-6 T 25-04-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 A4U88_RS19155 212111be03477d3a910ca724e3993b42 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 24 98 1.2E-8 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19155 212111be03477d3a910ca724e3993b42 104 Gene3D G3DSA:1.10.760.10 21 103 1.6E-28 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS04840 28e592370cb6068bf6950cb22ee2c457 164 SUPERFAMILY SSF101307 8 155 1.09E-47 T 25-04-2017 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 A4U88_RS04840 28e592370cb6068bf6950cb22ee2c457 164 Pfam PF04608 Phosphatidylglycerophosphatase A 15 155 5.5E-52 T 25-04-2017 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 A4U88_RS04840 28e592370cb6068bf6950cb22ee2c457 164 PIRSF PIRSF006162 4 162 1.4E-59 T 25-04-2017 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668 A4U88_RS12585 dbbbfab86ec7ec5180b7edb2105ef437 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.546 T 25-04-2017 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 A4U88_RS12585 dbbbfab86ec7ec5180b7edb2105ef437 201 SUPERFAMILY SSF52218 1 199 6.71E-59 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS12585 dbbbfab86ec7ec5180b7edb2105ef437 201 Pfam PF02525 Flavodoxin-like fold 3 195 5.9E-47 T 25-04-2017 IPR003680 Flavodoxin-like fold A4U88_RS12585 dbbbfab86ec7ec5180b7edb2105ef437 201 Gene3D G3DSA:3.40.50.360 1 199 9.5E-69 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS23120 218be32e209e7cabb9943c9821f3f609 111 Pfam PF10625 Universal stress protein B (UspB) 1 107 1.4E-54 T 25-04-2017 IPR019598 Universal stress protein B A4U88_RS23120 218be32e209e7cabb9943c9821f3f609 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 36.241 T 25-04-2017 IPR019598 Universal stress protein B A4U88_RS15710 d0dd67329176aa653507fbd3e6edb5f2 195 Gene3D G3DSA:3.40.109.10 7 189 4.3E-43 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS15710 d0dd67329176aa653507fbd3e6edb5f2 195 SUPERFAMILY SSF55469 5 188 7.85E-43 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS15710 d0dd67329176aa653507fbd3e6edb5f2 195 Pfam PF00881 Nitroreductase family 17 56 6.5E-9 T 25-04-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 A4U88_RS15710 d0dd67329176aa653507fbd3e6edb5f2 195 Pfam PF00881 Nitroreductase family 81 160 6.7E-7 T 25-04-2017 IPR029479 Nitroreductase Reactome: R-HSA-209968 A4U88_RS16725 3f38644f7f506adbcd2d25902f65044e 179 SUPERFAMILY SSF56925 31 179 1.45E-5 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS16725 3f38644f7f506adbcd2d25902f65044e 179 Pfam PF07437 YfaZ precursor 1 179 2.0E-70 T 25-04-2017 IPR009998 YfaZ A4U88_RS19720 0383551e7652acb749f7fcc31f6e1d7a 305 SUPERFAMILY SSF51679 9 304 1.31E-46 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS19720 0383551e7652acb749f7fcc31f6e1d7a 305 Gene3D G3DSA:3.20.20.30 7 304 7.5E-51 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS19720 0383551e7652acb749f7fcc31f6e1d7a 305 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 7 302 4.2E-99 T 25-04-2017 IPR020020 Luciferase-type oxidoreductase A4U88_RS19720 0383551e7652acb749f7fcc31f6e1d7a 305 Pfam PF00296 Luciferase-like monooxygenase 33 224 5.3E-28 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS07445 d03ec01fb525d2bbbd984578bfa51502 168 SUPERFAMILY SSF55729 1 145 7.65E-29 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07445 d03ec01fb525d2bbbd984578bfa51502 168 Gene3D G3DSA:3.40.630.30 1 130 9.1E-21 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07445 d03ec01fb525d2bbbd984578bfa51502 168 Pfam PF00583 Acetyltransferase (GNAT) family 53 129 1.8E-9 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS22200 0932687497a00b164e96de1f04979a05 68 Pfam PF03889 Domain of unknown function 9 46 3.3E-23 T 25-04-2017 IPR005589 Protein of unknown function DUF331 A4U88_RS03225 25e70e340919d277f499528c7e7f7586 97 Gene3D G3DSA:3.30.70.260 11 84 1.2E-21 T 25-04-2017 A4U88_RS03225 25e70e340919d277f499528c7e7f7586 97 SUPERFAMILY SSF55021 10 82 1.17E-16 T 25-04-2017 A4U88_RS03225 25e70e340919d277f499528c7e7f7586 97 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 16 79 3.0E-16 T 25-04-2017 A4U88_RS03225 25e70e340919d277f499528c7e7f7586 97 Pfam PF13710 ACT domain 19 79 1.9E-9 T 25-04-2017 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 Gene3D G3DSA:1.10.760.10 318 422 1.2E-28 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 Pfam PF00034 Cytochrome c 30 129 6.5E-6 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 PIRSF PIRSF000018 1 440 6.9E-173 T 25-04-2017 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 SUPERFAMILY SSF46626 318 421 1.06E-24 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 Gene3D G3DSA:1.10.760.10 27 129 8.1E-17 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 Gene3D G3DSA:1.10.760.10 176 290 1.4E-12 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 SUPERFAMILY SSF46626 18 153 9.03E-22 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 PRINTS PR00605 Class IC cytochrome C signature 378 400 2.3E-5 T 25-04-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 PRINTS PR00605 Class IC cytochrome C signature 325 336 2.3E-5 T 25-04-2017 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 SUPERFAMILY SSF46626 178 295 6.12E-17 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS10455 3d90ef6832e2827144c7037fccf58744 445 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 316 400 6.8E-11 T 25-04-2017 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 A4U88_RS19375 83d6210932735adf4eb4ded17491f7c7 129 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 1 125 6.2E-64 T 25-04-2017 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE A4U88_RS19375 83d6210932735adf4eb4ded17491f7c7 129 Pfam PF02657 Fe-S metabolism associated domain 3 123 2.9E-39 T 25-04-2017 IPR003808 Fe-S metabolism associated domain, SufE-like A4U88_RS19375 83d6210932735adf4eb4ded17491f7c7 129 Gene3D G3DSA:3.90.1010.10 1 128 5.2E-46 T 25-04-2017 A4U88_RS19375 83d6210932735adf4eb4ded17491f7c7 129 SUPERFAMILY SSF82649 2 127 2.14E-41 T 25-04-2017 A4U88_RS15070 90ca87c6058997f18711a18b5777c79a 218 Pfam PF05944 Phage small terminase subunit 36 164 4.4E-44 T 25-04-2017 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 A4U88_RS14220 cbb73beee7919ab4ea2fc24ebe7eb390 300 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 222 2.0E-48 T 25-04-2017 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 A4U88_RS14220 cbb73beee7919ab4ea2fc24ebe7eb390 300 SUPERFAMILY SSF51197 95 223 4.67E-18 T 25-04-2017 A4U88_RS14220 cbb73beee7919ab4ea2fc24ebe7eb390 300 Gene3D G3DSA:2.60.120.330 121 222 5.2E-16 T 25-04-2017 IPR027443 Isopenicillin N synthase-like A4U88_RS14960 ef271f05d7b6b0c0dbb846ee63ed9616 71 Pfam PF10781 Dextransucrase DSRB 6 65 4.3E-37 T 25-04-2017 IPR019717 Dextransucrase DSRB A4U88_RS14960 ef271f05d7b6b0c0dbb846ee63ed9616 71 Hamap MF_01549 Protein DsrB [dsrB]. 6 67 27.015 T 25-04-2017 IPR019717 Dextransucrase DSRB A4U88_RS23695 2cdb19a193fcbd3af7fc685d8eb501cc 317 Pfam PF04748 Divergent polysaccharide deacetylase 28 238 9.7E-76 T 25-04-2017 IPR006837 Divergent polysaccharide deacetylase A4U88_RS23695 2cdb19a193fcbd3af7fc685d8eb501cc 317 Gene3D G3DSA:3.20.20.370 20 244 2.7E-106 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS23695 2cdb19a193fcbd3af7fc685d8eb501cc 317 SUPERFAMILY SSF88713 24 238 8.0E-71 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 6.6E-132 T 25-04-2017 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 4.5E-6 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 4.5E-6 T 25-04-2017 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 SUPERFAMILY SSF55681 13 322 4.38E-83 T 25-04-2017 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 14 321 2.0E-48 T 25-04-2017 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.925 T 25-04-2017 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 A4U88_RS01590 796caeb93c821b314e0d9e0346bf338d 325 Gene3D G3DSA:3.30.930.10 14 321 3.6E-74 T 25-04-2017 A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 SUPERFAMILY SSF102114 6 444 1.27E-144 T 25-04-2017 A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 Pfam PF06969 HemN C-terminal domain 363 431 2.4E-11 T 25-04-2017 IPR010723 HemN, C-terminal A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 SMART SM00729 52 272 4.4E-54 T 25-04-2017 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 Gene3D G3DSA:3.80.30.20 53 274 1.4E-28 T 25-04-2017 IPR023404 Radical SAM, alpha/beta horseshoe A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 Pfam PF04055 Radical SAM superfamily 57 226 3.0E-17 T 25-04-2017 IPR007197 Radical SAM GO:0003824|GO:0051536 A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 PIRSF PIRSF000167 3 454 3.1E-174 T 25-04-2017 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22 A4U88_RS23935 abce2de1848bd04816a8a406ebea0c58 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 1.1E-220 T 25-04-2017 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22 A4U88_RS02275 41f993b16f36c8b547614ca0e27a1022 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 141 7.0E-39 T 25-04-2017 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 A4U88_RS02275 41f993b16f36c8b547614ca0e27a1022 149 SUPERFAMILY SSF102400 1 143 4.45E-46 T 25-04-2017 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 A4U88_RS02275 41f993b16f36c8b547614ca0e27a1022 149 Gene3D G3DSA:3.40.50.10110 1 143 9.3E-52 T 25-04-2017 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 4.5E-13 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 Gene3D G3DSA:1.10.357.10 1 194 4.0E-49 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 SUPERFAMILY SSF48498 81 193 8.01E-20 T 25-04-2017 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 SUPERFAMILY SSF46689 5 79 1.9E-16 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 198 109.281 T 25-04-2017 IPR017757 Transcriptional repressor BetI A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 Pfam PF13977 Bacterial transcriptional repressor 84 189 2.2E-33 T 25-04-2017 A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 3.1E-80 T 25-04-2017 IPR017757 Transcriptional repressor BetI A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.1E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS07355 eb16a8546a34a8ce4c03aa3d3a26f188 200 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.1E-5 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS11600 eb7e6b1de883fff120906f5868b0dfea 445 SUPERFAMILY SSF51679 9 435 2.62E-126 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS11600 eb7e6b1de883fff120906f5868b0dfea 445 PIRSF PIRSF000337 7 444 3.2E-149 T 25-04-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 A4U88_RS11600 eb7e6b1de883fff120906f5868b0dfea 445 Gene3D G3DSA:3.20.20.30 347 436 1.2E-129 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS11600 eb7e6b1de883fff120906f5868b0dfea 445 Gene3D G3DSA:3.20.20.30 7 309 1.2E-129 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS11600 eb7e6b1de883fff120906f5868b0dfea 445 Pfam PF00296 Luciferase-like monooxygenase 27 387 1.1E-55 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS11600 eb7e6b1de883fff120906f5868b0dfea 445 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 14 429 2.3E-168 T 25-04-2017 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 A4U88_RS13275 eb7f5e2a067db5893049a146222c5954 190 SUPERFAMILY SSF102405 2 180 3.21E-62 T 25-04-2017 A4U88_RS13275 eb7f5e2a067db5893049a146222c5954 190 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 4 180 1.0E-61 T 25-04-2017 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG A4U88_RS13275 eb7f5e2a067db5893049a146222c5954 190 Gene3D G3DSA:3.40.50.450 3 186 1.5E-69 T 25-04-2017 A4U88_RS13275 eb7f5e2a067db5893049a146222c5954 190 Pfam PF03641 Possible lysine decarboxylase 47 176 7.7E-41 T 25-04-2017 IPR031100 LOG family A4U88_RS00470 62c39cd1006736a25267ae9cbbf3fc98 63 ProDom PD053230 YHJR ECS4415 STY4179 CYTOPLASMIC 17 58 1.0E-8 T 25-04-2017 IPR024487 Cellulose biosynthesis protein BcsR A4U88_RS00470 62c39cd1006736a25267ae9cbbf3fc98 63 Pfam PF10945 Cellulose biosynthesis protein BcsR 16 57 4.0E-23 T 25-04-2017 IPR024487 Cellulose biosynthesis protein BcsR A4U88_RS14860 90d3f36c5b445451d2997c7cf3511928 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 1.0E-44 T 25-04-2017 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 A4U88_RS14860 90d3f36c5b445451d2997c7cf3511928 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 1.5E-39 T 25-04-2017 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 A4U88_RS14860 90d3f36c5b445451d2997c7cf3511928 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 2.0E-19 T 25-04-2017 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 A4U88_RS14860 90d3f36c5b445451d2997c7cf3511928 96 SUPERFAMILY SSF54909 1 95 1.18E-37 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS14860 90d3f36c5b445451d2997c7cf3511928 96 PIRSF PIRSF001486 1 94 1.3E-46 T 25-04-2017 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185 A4U88_RS06395 5f77bad3fc7c7cd8d11ef9602916389b 513 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 506 3.8E-9 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS06395 5f77bad3fc7c7cd8d11ef9602916389b 513 SMART SM00387 419 508 3.2E-11 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS06395 5f77bad3fc7c7cd8d11ef9602916389b 513 Pfam PF05231 MASE1 11 281 2.9E-42 T 25-04-2017 IPR007895 MASE1 A4U88_RS06395 5f77bad3fc7c7cd8d11ef9602916389b 513 Gene3D G3DSA:3.30.565.10 387 507 4.4E-11 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS06395 5f77bad3fc7c7cd8d11ef9602916389b 513 Pfam PF07730 Histidine kinase 316 380 2.0E-14 T 25-04-2017 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 A4U88_RS06395 5f77bad3fc7c7cd8d11ef9602916389b 513 SUPERFAMILY SSF55874 396 505 2.75E-18 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS14935 87610f70f1795c6a1bc9dfd94a909577 461 Pfam PF02515 CoA-transferase family III 203 397 3.2E-43 T 25-04-2017 IPR003673 CoA-transferase family III GO:0003824 A4U88_RS14935 87610f70f1795c6a1bc9dfd94a909577 461 SUPERFAMILY SSF89796 201 399 1.19E-52 T 25-04-2017 IPR023606 CoA-transferase family III domain A4U88_RS14935 87610f70f1795c6a1bc9dfd94a909577 461 Gene3D G3DSA:3.40.50.10540 31 149 3.9E-5 T 25-04-2017 IPR023606 CoA-transferase family III domain A4U88_RS14935 87610f70f1795c6a1bc9dfd94a909577 461 Gene3D G3DSA:3.40.50.10540 200 412 8.9E-60 T 25-04-2017 IPR023606 CoA-transferase family III domain A4U88_RS14935 87610f70f1795c6a1bc9dfd94a909577 461 SUPERFAMILY SSF89796 29 197 1.23E-20 T 25-04-2017 IPR023606 CoA-transferase family III domain A4U88_RS16570 6c36836243f5e84ed96d9ba8028cb6ab 151 Pfam PF16463 Phage tail tube protein family 11 147 4.5E-70 T 25-04-2017 IPR032493 Phage tail tube protein family A4U88_RS00050 97552168a97c1077e4cf420fa342a118 137 Gene3D G3DSA:2.60.40.790 5 137 1.2E-15 T 25-04-2017 IPR008978 HSP20-like chaperone A4U88_RS00050 97552168a97c1077e4cf420fa342a118 137 SUPERFAMILY SSF49764 31 137 3.84E-20 T 25-04-2017 IPR008978 HSP20-like chaperone A4U88_RS00050 97552168a97c1077e4cf420fa342a118 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 43.636 T 25-04-2017 IPR023728 Small heat shock protein IbpA A4U88_RS00050 97552168a97c1077e4cf420fa342a118 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 5.7E-21 T 25-04-2017 IPR002068 Alpha crystallin/Hsp20 domain A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 SUPERFAMILY SSF46689 10 58 8.69E-8 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 61 103 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 9.4E-7 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 9.4E-7 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 SUPERFAMILY SSF46689 60 110 1.52E-13 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 SMART SM00342 24 107 4.8E-27 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 Gene3D G3DSA:1.10.10.60 61 109 4.6E-18 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 Pfam PF12833 Helix-turn-helix domain 30 108 3.4E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS13890 7897e0ae197d6b767ade788be28fd2fa 128 Gene3D G3DSA:1.10.10.60 5 60 1.7E-17 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS01710 5defab146e0d2e46cc5d8fe4c8c28e48 132 Pfam PF03994 Domain of Unknown Function (DUF350) 13 65 1.6E-11 T 25-04-2017 IPR007140 Protein of unknown function DUF350 A4U88_RS01710 5defab146e0d2e46cc5d8fe4c8c28e48 132 Pfam PF03994 Domain of Unknown Function (DUF350) 78 130 1.9E-11 T 25-04-2017 IPR007140 Protein of unknown function DUF350 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 1.5E-7 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 265 290 1.5E-7 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 78 100 1.5E-7 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 PRINTS PR01036 Tetracycline resistance protein TetB signature 398 417 1.5E-7 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 Gene3D G3DSA:1.20.1250.20 263 419 2.2E-19 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 Gene3D G3DSA:1.20.1250.20 457 490 2.2E-19 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 Gene3D G3DSA:1.20.1250.20 17 193 1.8E-33 T 25-04-2017 A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 SUPERFAMILY SSF103473 8 198 7.19E-69 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 SUPERFAMILY SSF103473 456 491 7.19E-69 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 SUPERFAMILY SSF103473 246 417 7.19E-69 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11200 bac170ffe6bad0277212a4205f6f7e42 495 Pfam PF07690 Major Facilitator Superfamily 21 407 5.7E-51 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS23955 839a3be05cc2999d157d87a512c4db81 214 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 3.9E-74 T 25-04-2017 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 A4U88_RS23955 839a3be05cc2999d157d87a512c4db81 214 Pfam PF01926 50S ribosome-binding GTPase 30 148 8.5E-21 T 25-04-2017 IPR006073 GTP binding domain GO:0005525 A4U88_RS23955 839a3be05cc2999d157d87a512c4db81 214 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 28.281 T 25-04-2017 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 A4U88_RS23955 839a3be05cc2999d157d87a512c4db81 214 Gene3D G3DSA:3.40.50.300 13 200 8.0E-43 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS23955 839a3be05cc2999d157d87a512c4db81 214 SUPERFAMILY SSF52540 18 201 2.25E-36 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 Gene3D G3DSA:3.30.465.10 436 519 3.8E-26 T 25-04-2017 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 SUPERFAMILY SSF56176 439 524 2.67E-22 T 25-04-2017 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 SUPERFAMILY SSF54631 292 426 3.78E-25 T 25-04-2017 A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 SMART SM01091 441 520 4.0E-27 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 Pfam PF00571 CBS domain 375 424 5.9E-7 T 25-04-2017 IPR000644 CBS domain A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 SMART SM00116 313 363 3.0 T 25-04-2017 IPR000644 CBS domain A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 SMART SM00116 376 424 6.6 T 25-04-2017 IPR000644 CBS domain A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 Pfam PF03741 Integral membrane protein TerC family 15 203 3.4E-50 T 25-04-2017 IPR005496 Integral membrane protein TerC GO:0016021 A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 Gene3D G3DSA:3.10.580.10 290 429 1.8E-16 T 25-04-2017 A4U88_RS07655 9ce4be79b064bdc91b098504f41d31ee 527 Pfam PF03471 Transporter associated domain 442 519 6.5E-19 T 25-04-2017 IPR005170 Transporter-associated domain A4U88_RS16865 a25b487809635ecfec31cab12a831443 224 SUPERFAMILY SSF56770 43 189 3.27E-64 T 25-04-2017 A4U88_RS16865 a25b487809635ecfec31cab12a831443 224 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 182 6.9E-69 T 25-04-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16865 a25b487809635ecfec31cab12a831443 224 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 68 174 2.9E-22 T 25-04-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16865 a25b487809635ecfec31cab12a831443 224 Gene3D G3DSA:3.40.50.700 51 178 8.4E-32 T 25-04-2017 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16865 a25b487809635ecfec31cab12a831443 224 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 148 164 - T 25-04-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16865 a25b487809635ecfec31cab12a831443 224 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 27 181 41.923 T 25-04-2017 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS05575 bb3b79a9d75edf944c690c8ec654db9b 137 Pfam PF00583 Acetyltransferase (GNAT) family 63 124 5.8E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS05575 bb3b79a9d75edf944c690c8ec654db9b 137 SUPERFAMILY SSF55729 1 128 1.47E-24 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS05575 bb3b79a9d75edf944c690c8ec654db9b 137 Gene3D G3DSA:3.40.630.30 1 131 4.7E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 5.0E-18 T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 5.0E-18 T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 5.0E-18 T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 TIGRFAM TIGR00077 lspA: signal peptidase II 2 161 2.5E-54 T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 17.037 T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 Pfam PF01252 Signal peptidase (SPase) II 15 155 6.5E-36 T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS03085 6062504647374cd9668183e8d61c8a20 169 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 25-04-2017 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 A4U88_RS05880 476310b0a108224857d3bf8ada190852 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 8 29 1.6E-7 T 25-04-2017 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 A4U88_RS05880 476310b0a108224857d3bf8ada190852 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 8 29 1.8E-8 T 25-04-2017 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 A4U88_RS08940 d9b08bf4888312c72374091e1ecc78a0 446 PIRSF PIRSF004539 1 444 3.0E-191 T 25-04-2017 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 A4U88_RS08940 d9b08bf4888312c72374091e1ecc78a0 446 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 441 6.0E-190 T 25-04-2017 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 A4U88_RS08940 d9b08bf4888312c72374091e1ecc78a0 446 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 6 376 5.7E-146 T 25-04-2017 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 A4U88_RS20770 88fa4170c534547a70e76236078beed8 140 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 1.1E-31 T 25-04-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 A4U88_RS20770 88fa4170c534547a70e76236078beed8 140 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 1.4E-65 T 25-04-2017 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 A4U88_RS10010 8bad5ec0e9e654ebacce50fb9eeb241b 307 Pfam PF01261 Xylose isomerase-like TIM barrel 29 259 1.9E-29 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS10010 8bad5ec0e9e654ebacce50fb9eeb241b 307 SUPERFAMILY SSF51658 131 305 7.99E-49 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS10010 8bad5ec0e9e654ebacce50fb9eeb241b 307 SUPERFAMILY SSF51658 3 99 7.99E-49 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS10010 8bad5ec0e9e654ebacce50fb9eeb241b 307 Gene3D G3DSA:3.20.20.150 2 305 2.0E-69 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS21365 0db4fbbe2fe38ee9cf83da33e3b98dc7 260 Pfam PF02405 Permease MlaE 45 256 6.4E-76 T 25-04-2017 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 A4U88_RS21365 0db4fbbe2fe38ee9cf83da33e3b98dc7 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 4.3E-104 T 25-04-2017 IPR003453 ABC transport permease subunit MlaE, Proteobacteria A4U88_RS17185 8b871b510fe03e404c8b0392338fe64c 275 PIRSF PIRSF018455 2 275 1.0E-117 T 25-04-2017 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 A4U88_RS17185 8b871b510fe03e404c8b0392338fe64c 275 Pfam PF03411 Penicillin-insensitive murein endopeptidase 36 269 3.5E-96 T 25-04-2017 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 A4U88_RS17185 8b871b510fe03e404c8b0392338fe64c 275 Gene3D G3DSA:3.30.1380.10 21 271 1.8E-104 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS17185 8b871b510fe03e404c8b0392338fe64c 275 SUPERFAMILY SSF55166 21 271 1.33E-98 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS11800 b3363b375b6fc4316e239cdfa8b09e20 25 Pfam PF08042 PqqA family 3 21 2.6E-10 T 25-04-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 A4U88_RS11800 b3363b375b6fc4316e239cdfa8b09e20 25 TIGRFAM TIGR02107 PQQ_syn_pqqA: coenzyme PQQ precursor peptide PqqA 4 24 4.6E-12 T 25-04-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 A4U88_RS11800 b3363b375b6fc4316e239cdfa8b09e20 25 Hamap MF_00656 Coenzyme PQQ synthesis protein A [pqqA]. 3 25 11.317 T 25-04-2017 IPR011725 Coenzyme PQQ biosynthesis protein A GO:0018189 A4U88_RS13355 6c84cb39d206c15c68bfddf8cd85219b 291 SUPERFAMILY SSF74650 8 276 3.7E-70 T 25-04-2017 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 A4U88_RS13355 6c84cb39d206c15c68bfddf8cd85219b 291 Gene3D G3DSA:2.70.98.10 10 277 6.8E-86 T 25-04-2017 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 A4U88_RS13355 6c84cb39d206c15c68bfddf8cd85219b 291 Pfam PF01263 Aldose 1-epimerase 29 276 6.6E-43 T 25-04-2017 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 A4U88_RS13355 6c84cb39d206c15c68bfddf8cd85219b 291 PIRSF PIRSF016020 7 287 6.7E-58 T 25-04-2017 IPR025532 Glucose-6-phosphate 1-epimerase A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 2.8E-50 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 2.8E-50 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 2.8E-50 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 2.8E-50 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 2.8E-50 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 Gene3D G3DSA:3.40.50.620 3 157 1.2E-53 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 Pfam PF01467 Cytidylyltransferase-like 6 134 6.0E-19 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 60 1.3E-15 T 25-04-2017 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.776 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 SUPERFAMILY SSF52374 4 156 7.24E-44 T 25-04-2017 A4U88_RS23780 328066c83ec098d222ce72a4bfce8134 161 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 4.2E-59 T 25-04-2017 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 A4U88_RS04155 036b5166cf20887ea0b496c3519f7344 75 Pfam PF04400 Protein of unknown function (DUF539) 23 64 4.2E-21 T 25-04-2017 IPR007495 (Na+)-NQR maturation factor NqrM A4U88_RS17585 0be4717f049f2f9287c6f3ea62fde190 71 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 7.0E-24 T 25-04-2017 IPR024530 Putative quorum-sensing-regulated virulence factor A4U88_RS17585 0be4717f049f2f9287c6f3ea62fde190 71 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 3.2E-31 T 25-04-2017 IPR024530 Putative quorum-sensing-regulated virulence factor A4U88_RS21415 bfcea2b3266cf2260a1a042a02afcff3 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS21415 bfcea2b3266cf2260a1a042a02afcff3 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 147 9.2E-37 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS21415 bfcea2b3266cf2260a1a042a02afcff3 148 Gene3D G3DSA:3.40.930.10 1 148 2.5E-46 T 25-04-2017 IPR002178 PTS EIIA type-2 domain A4U88_RS21415 bfcea2b3266cf2260a1a042a02afcff3 148 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 148 7.0E-61 T 25-04-2017 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 A4U88_RS21415 bfcea2b3266cf2260a1a042a02afcff3 148 SUPERFAMILY SSF55804 1 148 3.53E-42 T 25-04-2017 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 A4U88_RS16795 b350e776b9fcbc472840c923568746b0 141 SUPERFAMILY SSF51182 41 136 2.61E-15 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS16795 b350e776b9fcbc472840c923568746b0 141 Gene3D G3DSA:2.60.120.10 39 130 1.6E-11 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS07750 f24b98a9df3b6dc96d876ec407363be2 458 Pfam PF02321 Outer membrane efflux protein 254 436 1.9E-32 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS07750 f24b98a9df3b6dc96d876ec407363be2 458 Pfam PF02321 Outer membrane efflux protein 31 227 4.8E-27 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS07750 f24b98a9df3b6dc96d876ec407363be2 458 Gene3D G3DSA:1.20.1600.10 29 446 2.6E-76 T 25-04-2017 A4U88_RS07750 f24b98a9df3b6dc96d876ec407363be2 458 SUPERFAMILY SSF56954 30 454 9.42E-90 T 25-04-2017 A4U88_RS07750 f24b98a9df3b6dc96d876ec407363be2 458 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 29 455 4.6E-118 T 25-04-2017 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 A4U88_RS06390 f69945bca116103ac5df62fbe6984688 434 Gene3D G3DSA:1.20.1250.20 13 208 5.7E-48 T 25-04-2017 A4U88_RS06390 f69945bca116103ac5df62fbe6984688 434 PIRSF PIRSF002808 2 434 6.5E-118 T 25-04-2017 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 A4U88_RS06390 f69945bca116103ac5df62fbe6984688 434 SUPERFAMILY SSF103473 10 419 4.19E-72 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS06390 f69945bca116103ac5df62fbe6984688 434 Pfam PF07690 Major Facilitator Superfamily 25 385 2.7E-45 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS06390 f69945bca116103ac5df62fbe6984688 434 Gene3D G3DSA:1.20.1250.20 232 423 8.0E-36 T 25-04-2017 A4U88_RS09720 7adc43449c1046c80089037fbc65061d 132 PIRSF PIRSF005610 1 124 1.2E-26 T 25-04-2017 IPR007360 Invasion gene expression up-regulator, SirB A4U88_RS09720 7adc43449c1046c80089037fbc65061d 132 Pfam PF04247 Invasion gene expression up-regulator, SirB 4 126 6.8E-43 T 25-04-2017 IPR007360 Invasion gene expression up-regulator, SirB A4U88_RS17890 3525e80c49f15d4ae000b397de185c24 350 Pfam PF06804 NlpB/DapX lipoprotein 41 344 4.0E-113 T 25-04-2017 IPR010653 NlpB/DapX lipoprotein A4U88_RS17890 3525e80c49f15d4ae000b397de185c24 350 PIRSF PIRSF026343 9 347 5.3E-121 T 25-04-2017 IPR014524 Outer membrane protein assembly factor BamC A4U88_RS17890 3525e80c49f15d4ae000b397de185c24 350 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 345 38.325 T 25-04-2017 IPR014524 Outer membrane protein assembly factor BamC A4U88_RS15105 dbb0e8073e1f56c2bb488b02e9a8ece3 152 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 6 148 4.0E-33 T 25-04-2017 IPR006522 Phage virion morphogensis protein A4U88_RS15105 dbb0e8073e1f56c2bb488b02e9a8ece3 152 Pfam PF05069 Phage virion morphogenesis family 6 149 1.2E-35 T 25-04-2017 IPR006522 Phage virion morphogensis protein A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 116 7.4E-31 T 25-04-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 SUPERFAMILY SSF57716 219 270 2.2E-17 T 25-04-2017 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 131 220 3.1E-28 T 25-04-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 Gene3D G3DSA:3.20.190.10 2 131 3.2E-36 T 25-04-2017 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 SMART SM01232 131 223 7.8E-50 T 25-04-2017 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 Gene3D G3DSA:1.10.8.50 132 271 1.4E-51 T 25-04-2017 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 271 44.089 T 25-04-2017 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 SMART SM00898 2 117 6.9E-51 T 25-04-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 ProSitePatterns PS01242 Zinc finger FPG-type signature. 246 270 - T 25-04-2017 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 Pfam PF06827 Zinc finger found in FPG and IleRS 243 270 6.1E-11 T 25-04-2017 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 SUPERFAMILY SSF81624 2 140 2.49E-41 T 25-04-2017 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 SUPERFAMILY SSF46946 132 224 5.59E-30 T 25-04-2017 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 A4U88_RS23785 8dc7852f95e369033fb80f889aa0b205 271 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 270 6.5E-102 T 25-04-2017 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 A4U88_RS12125 1a29987118b9e628231c54d5f2dd3d9b 189 SUPERFAMILY SSF47413 15 77 1.29E-16 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS12125 1a29987118b9e628231c54d5f2dd3d9b 189 Pfam PF01381 Helix-turn-helix 19 71 1.6E-16 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS12125 1a29987118b9e628231c54d5f2dd3d9b 189 SMART SM00530 18 73 8.5E-16 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS12125 1a29987118b9e628231c54d5f2dd3d9b 189 Gene3D G3DSA:1.10.260.40 16 111 5.0E-23 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS12125 1a29987118b9e628231c54d5f2dd3d9b 189 SUPERFAMILY SSF51182 66 186 5.94E-21 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS12125 1a29987118b9e628231c54d5f2dd3d9b 189 Gene3D G3DSA:2.60.120.10 112 186 1.0E-22 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS08055 b8ce9943cecdab03191248b31bd9df95 159 Pfam PF10722 Putative bacterial sensory transduction regulator 9 131 2.1E-15 T 25-04-2017 IPR019660 Putative sensory transduction regulator YbjN A4U88_RS07430 0606efc5982202cea425d5657b5fbc96 115 SUPERFAMILY SSF54909 1 99 2.39E-27 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS07430 0606efc5982202cea425d5657b5fbc96 115 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 77 1.7E-16 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS07430 0606efc5982202cea425d5657b5fbc96 115 Gene3D G3DSA:3.30.70.900 1 99 6.7E-23 T 25-04-2017 A4U88_RS12615 6990936ee306229b58c352767ca9ccd3 84 Pfam PF03891 Domain of unknown function (DUF333) 27 79 2.7E-17 T 25-04-2017 IPR005590 Protein of unknown function DUF333 A4U88_RS19365 873f03ed6a663a646c93b2eede9372aa 74 SUPERFAMILY SSF50182 21 71 4.36E-20 T 25-04-2017 IPR010920 LSM domain A4U88_RS19365 873f03ed6a663a646c93b2eede9372aa 74 Gene3D G3DSA:2.30.30.100 19 73 2.9E-33 T 25-04-2017 A4U88_RS19365 873f03ed6a663a646c93b2eede9372aa 74 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 1.9E-26 T 25-04-2017 IPR010305 Protein of unknown function DUF903 A4U88_RS13775 10a8204f7d701ac7494b047f0d3fc645 454 Pfam PF03315 Serine dehydratase beta chain 3 155 1.4E-56 T 25-04-2017 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 A4U88_RS13775 10a8204f7d701ac7494b047f0d3fc645 454 Gene3D G3DSA:3.30.1330.90 10 157 2.0E-55 T 25-04-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 A4U88_RS13775 10a8204f7d701ac7494b047f0d3fc645 454 SUPERFAMILY SSF143548 16 157 3.66E-46 T 25-04-2017 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 A4U88_RS13775 10a8204f7d701ac7494b047f0d3fc645 454 Pfam PF03313 Serine dehydratase alpha chain 184 448 1.4E-96 T 25-04-2017 IPR005130 Serine dehydratase-like, alpha subunit A4U88_RS13775 10a8204f7d701ac7494b047f0d3fc645 454 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 8.2E-228 T 25-04-2017 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 A4U88_RS11555 30b113a0c15bf02d3b1b175ac1859924 412 SUPERFAMILY SSF56935 50 383 1.01E-6 T 25-04-2017 A4U88_RS01930 b8efc651b5ecfba54d1f05201d10d811 278 SUPERFAMILY SSF51717 7 274 6.41E-106 T 25-04-2017 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 A4U88_RS01930 b8efc651b5ecfba54d1f05201d10d811 278 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 25-04-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 A4U88_RS01930 b8efc651b5ecfba54d1f05201d10d811 278 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 16 271 2.2E-102 T 25-04-2017 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 A4U88_RS01930 b8efc651b5ecfba54d1f05201d10d811 278 Pfam PF00809 Pterin binding enzyme 18 257 8.7E-88 T 25-04-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 A4U88_RS01930 b8efc651b5ecfba54d1f05201d10d811 278 Gene3D G3DSA:3.20.20.20 12 273 1.4E-110 T 25-04-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 A4U88_RS01930 b8efc651b5ecfba54d1f05201d10d811 278 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 25-04-2017 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 PIRSF PIRSF009393 1 712 2.2E-274 T 25-04-2017 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 SUPERFAMILY SSF53383 130 562 2.2E-101 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 SUPERFAMILY SSF55904 567 705 5.49E-41 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 699 3.1E-45 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 Gene3D G3DSA:3.90.100.10 587 709 1.6E-35 T 25-04-2017 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 Gene3D G3DSA:3.40.640.10 130 423 1.8E-98 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 25-04-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 3.8E-187 T 25-04-2017 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 2.2E-28 T 25-04-2017 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 A4U88_RS19190 3f1d5d54a06b1d1387c7c5ee640641d2 714 Gene3D G3DSA:3.90.1150.10 426 586 2.2E-64 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS17355 1d4ae17a4cdb5da9066e0676985649e1 146 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 11 128 3.2E-16 T 25-04-2017 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0042710 A4U88_RS17355 1d4ae17a4cdb5da9066e0676985649e1 146 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 110 2.0E-12 T 25-04-2017 A4U88_RS17355 1d4ae17a4cdb5da9066e0676985649e1 146 Pfam PF13994 PgaD-like protein 5 125 1.7E-20 T 25-04-2017 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0042710 A4U88_RS14825 832dea2d08bbf7e8ad26240a2c5af046 320 SUPERFAMILY SSF54909 7 311 9.47E-107 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS14825 832dea2d08bbf7e8ad26240a2c5af046 320 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 9 305 5.3E-86 T 25-04-2017 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 A4U88_RS14825 832dea2d08bbf7e8ad26240a2c5af046 320 Pfam PF04261 Dyp-type peroxidase family 9 305 6.2E-94 T 25-04-2017 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 A4U88_RS04750 ffccd47c173e05df72a5fae49329bbb2 468 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS04750 ffccd47c173e05df72a5fae49329bbb2 468 PIRSF PIRSF006060 1 467 3.1E-78 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS04750 ffccd47c173e05df72a5fae49329bbb2 468 Pfam PF00324 Amino acid permease 22 460 2.6E-109 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS17200 7b7823079346a34d7b8579618813dfcd 176 SUPERFAMILY SSF160443 96 150 4.18E-9 T 25-04-2017 IPR002625 Smr domain A4U88_RS17200 7b7823079346a34d7b8579618813dfcd 176 Pfam PF01713 Smr domain 98 170 3.1E-17 T 25-04-2017 IPR002625 Smr domain A4U88_RS17200 7b7823079346a34d7b8579618813dfcd 176 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 40.259 T 25-04-2017 IPR022990 Uncharacterised protein family UPF0115 A4U88_RS17200 7b7823079346a34d7b8579618813dfcd 176 SMART SM00463 95 173 2.9E-20 T 25-04-2017 IPR002625 Smr domain A4U88_RS00295 01304bc024cc0823cc1e32e4436dac09 447 Pfam PF13449 Esterase-like activity of phytase 90 421 4.1E-68 T 25-04-2017 IPR027372 Phytase-like domain A4U88_RS00295 01304bc024cc0823cc1e32e4436dac09 447 SUPERFAMILY SSF63829 93 113 9.81E-5 T 25-04-2017 A4U88_RS00295 01304bc024cc0823cc1e32e4436dac09 447 SUPERFAMILY SSF63829 242 258 9.81E-5 T 25-04-2017 A4U88_RS00295 01304bc024cc0823cc1e32e4436dac09 447 SUPERFAMILY SSF63829 145 210 9.81E-5 T 25-04-2017 A4U88_RS03760 2826d8a1f492806d32acfe1bae7f4526 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 2.0E-20 T 25-04-2017 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 A4U88_RS03760 2826d8a1f492806d32acfe1bae7f4526 61 Pfam PF02599 Global regulator protein family 1 52 2.6E-27 T 25-04-2017 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 A4U88_RS03760 2826d8a1f492806d32acfe1bae7f4526 61 Hamap MF_00167 Carbon storage regulator [csrA]. 1 61 20.555 T 25-04-2017 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 A4U88_RS03760 2826d8a1f492806d32acfe1bae7f4526 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 25-04-2017 A4U88_RS03760 2826d8a1f492806d32acfe1bae7f4526 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 58 2.3E-31 T 25-04-2017 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 A4U88_RS23740 321716252ded402fe17ad0e93ace8db7 364 SUPERFAMILY SSF53756 38 358 4.49E-62 T 25-04-2017 A4U88_RS23740 321716252ded402fe17ad0e93ace8db7 364 Gene3D G3DSA:3.40.50.2000 195 356 4.4E-31 T 25-04-2017 A4U88_RS23740 321716252ded402fe17ad0e93ace8db7 364 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 161 320 8.4E-22 T 25-04-2017 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 A4U88_RS23740 321716252ded402fe17ad0e93ace8db7 364 Gene3D G3DSA:3.40.50.2000 38 182 5.2E-22 T 25-04-2017 A4U88_RS16885 c0507249416607d1fcad4fbf0c9e477d 199 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 195 45.91 T 25-04-2017 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 A4U88_RS16885 c0507249416607d1fcad4fbf0c9e477d 199 SUPERFAMILY SSF109604 3 185 2.51E-46 T 25-04-2017 A4U88_RS16885 c0507249416607d1fcad4fbf0c9e477d 199 Pfam PF13023 HD domain 11 161 3.7E-18 T 25-04-2017 IPR006674 HD domain A4U88_RS16885 c0507249416607d1fcad4fbf0c9e477d 199 SMART SM00471 26 151 1.8E-7 T 25-04-2017 IPR003607 HD/PDEase domain A4U88_RS16885 c0507249416607d1fcad4fbf0c9e477d 199 Gene3D G3DSA:1.10.3210.10 2 194 9.6E-53 T 25-04-2017 IPR006674 HD domain A4U88_RS16885 c0507249416607d1fcad4fbf0c9e477d 199 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 176 1.0E-40 T 25-04-2017 A4U88_RS15055 168b216767f81a5e57f87528d89c949d 589 Pfam PF03237 Terminase-like family 164 572 1.2E-99 T 25-04-2017 IPR004921 Terminase, large subunit A4U88_RS15055 168b216767f81a5e57f87528d89c949d 589 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 11 68 1.3E-24 T 25-04-2017 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 A4U88_RS05825 8781fb6676916849d23b551c16afc992 95 SUPERFAMILY SSF47598 51 85 7.12E-5 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS05825 8781fb6676916849d23b551c16afc992 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 89 1.0E-8 T 25-04-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 A4U88_RS19865 16dee8547e3b97d672410127628ac76b 454 Pfam PF06123 Inner membrane protein CreD 6 429 3.7E-153 T 25-04-2017 IPR010364 Uncharacterised protein family, inner membrane CreD A4U88_RS19865 16dee8547e3b97d672410127628ac76b 454 PIRSF PIRSF004548 1 449 4.1E-171 T 25-04-2017 IPR010364 Uncharacterised protein family, inner membrane CreD A4U88_RS18610 bf78c6d2611fcfa9c5cf8d9d0855ac01 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 25-04-2017 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site A4U88_RS18610 bf78c6d2611fcfa9c5cf8d9d0855ac01 86 Gene3D G3DSA:3.30.70.20 4 72 8.3E-18 T 25-04-2017 A4U88_RS18610 bf78c6d2611fcfa9c5cf8d9d0855ac01 86 Pfam PF12838 4Fe-4S dicluster domain 8 56 5.5E-7 T 25-04-2017 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain A4U88_RS18610 bf78c6d2611fcfa9c5cf8d9d0855ac01 86 SUPERFAMILY SSF54862 5 66 4.71E-18 T 25-04-2017 A4U88_RS00635 9d08865503afa4ac05d3c880070750a3 374 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 32 362 3.0E-141 T 25-04-2017 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX A4U88_RS18250 f6f893dce17aa8af3d4d962f4b200f3c 407 SUPERFAMILY SSF103473 12 399 2.62E-48 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS18250 f6f893dce17aa8af3d4d962f4b200f3c 407 Gene3D G3DSA:1.20.1250.20 21 198 1.1E-20 T 25-04-2017 A4U88_RS18250 f6f893dce17aa8af3d4d962f4b200f3c 407 Gene3D G3DSA:1.20.1250.20 219 397 1.8E-9 T 25-04-2017 A4U88_RS18250 f6f893dce17aa8af3d4d962f4b200f3c 407 Pfam PF07690 Major Facilitator Superfamily 27 302 7.5E-28 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS06125 bc2e7c60ae680c9384482e0ae40e53c3 345 Gene3D G3DSA:3.30.2010.10 179 238 1.2E-10 T 25-04-2017 A4U88_RS06125 bc2e7c60ae680c9384482e0ae40e53c3 345 Pfam PF01435 Peptidase family M48 157 339 4.4E-25 T 25-04-2017 IPR001915 Peptidase M48 GO:0004222|GO:0006508 A4U88_RS10855 d8a55f15d0533185b6bf2452e094e980 78 Pfam PF07869 Protein of unknown function (DUF1656) 19 69 2.0E-14 T 25-04-2017 IPR012451 Protein of unknown function DUF1656 A4U88_RS17360 5153ec9974ad70e8f9a58a331e609401 444 SUPERFAMILY SSF53448 59 340 6.14E-62 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS17360 5153ec9974ad70e8f9a58a331e609401 444 Gene3D G3DSA:3.90.550.10 75 321 1.7E-47 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS17360 5153ec9974ad70e8f9a58a331e609401 444 Pfam PF00535 Glycosyl transferase family 2 78 245 1.2E-32 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS17360 5153ec9974ad70e8f9a58a331e609401 444 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 30 438 8.2E-192 T 25-04-2017 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0042710 A4U88_RS18360 ad8a33e4eeb182d11d65197209161a01 318 Pfam PF03547 Membrane transport protein 169 307 6.6E-11 T 25-04-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 A4U88_RS18360 ad8a33e4eeb182d11d65197209161a01 318 Pfam PF03547 Membrane transport protein 14 151 1.1E-8 T 25-04-2017 IPR004776 Membrane transport protein GO:0016021|GO:0055085 A4U88_RS23945 b79b4b66000b1fbcc56138a3b4341327 180 Pfam PF04220 Der GTPase activator (YihI) 14 171 8.1E-56 T 25-04-2017 IPR007336 Der GTPase activator A4U88_RS23945 b79b4b66000b1fbcc56138a3b4341327 180 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 174 17.515 T 25-04-2017 IPR007336 Der GTPase activator A4U88_RS15690 3308919e2265cda91621075ddb3e268b 172 SUPERFAMILY SSF55729 2 166 7.67E-34 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS15690 3308919e2265cda91621075ddb3e268b 172 Pfam PF13420 Acetyltransferase (GNAT) domain 3 155 3.1E-21 T 25-04-2017 A4U88_RS15690 3308919e2265cda91621075ddb3e268b 172 Gene3D G3DSA:3.40.630.30 1 167 9.7E-41 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02635 2928f6e419233de571d72156c883412a 572 Pfam PF00884 Sulfatase 26 430 1.1E-66 T 25-04-2017 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 A4U88_RS02635 2928f6e419233de571d72156c883412a 572 ProSitePatterns PS00149 Sulfatases signature 2. 124 134 - T 25-04-2017 IPR024607 Sulfatase, conserved site A4U88_RS02635 2928f6e419233de571d72156c883412a 572 SUPERFAMILY SSF53649 24 532 1.0E-124 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS02635 2928f6e419233de571d72156c883412a 572 ProSitePatterns PS00523 Sulfatases signature 1. 70 82 - T 25-04-2017 IPR024607 Sulfatase, conserved site A4U88_RS02635 2928f6e419233de571d72156c883412a 572 Gene3D G3DSA:3.30.1120.10 461 537 4.9E-13 T 25-04-2017 A4U88_RS02635 2928f6e419233de571d72156c883412a 572 Gene3D G3DSA:3.40.720.10 23 457 3.4E-112 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS08535 01c9c1d2c2593b5efb250698b2f3c527 173 SUPERFAMILY SSF46785 6 107 2.33E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS08535 01c9c1d2c2593b5efb250698b2f3c527 173 Pfam PF01638 HxlR-like helix-turn-helix 20 104 1.0E-19 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS08535 01c9c1d2c2593b5efb250698b2f3c527 173 Gene3D G3DSA:1.10.10.10 1 104 4.1E-31 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS16575 39c0231eb5b51c3d8ae522e3ed80ba5b 130 TIGRFAM TIGR01725 phge_HK97_gp10: phage protein, HK97 gp10 family 7 127 2.0E-9 T 25-04-2017 IPR010064 Bacteriophage HK97-gp10, putative tail-component A4U88_RS14285 3b660c43436717d996926f242d27e595 169 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 91 166 1.1E-6 T 25-04-2017 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 A4U88_RS14285 3b660c43436717d996926f242d27e595 169 TIGRFAM TIGR03823 FliZ: flagellar regulatory protein FliZ 1 167 2.5E-92 T 25-04-2017 IPR022523 Flagellar regulator, FliZ A4U88_RS10815 8d26295d4780a7d69351504e06adc6cf 213 SUPERFAMILY SSF51735 1 209 2.69E-40 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10815 8d26295d4780a7d69351504e06adc6cf 213 Pfam PF13460 NAD(P)H-binding 7 202 2.1E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10815 8d26295d4780a7d69351504e06adc6cf 213 Gene3D G3DSA:3.40.50.720 1 210 1.5E-41 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17150 0c89eee69405f2ab4662657665c2ce24 343 Pfam PF02424 ApbE family 37 320 6.5E-79 T 25-04-2017 IPR024932 Flavin transferase ApbE GO:0017013 A4U88_RS17150 0c89eee69405f2ab4662657665c2ce24 343 SUPERFAMILY SSF143631 32 341 2.04E-92 T 25-04-2017 IPR003374 ApbE-like domain A4U88_RS17150 0c89eee69405f2ab4662657665c2ce24 343 PIRSF PIRSF006268 2 343 1.0E-86 T 25-04-2017 IPR024932 Flavin transferase ApbE GO:0017013 A4U88_RS04910 ae8505e94bbe947c8db1e7db074005e0 112 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 22 95 1.7E-18 T 25-04-2017 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 A4U88_RS04910 ae8505e94bbe947c8db1e7db074005e0 112 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 15 110 9.1E-40 T 25-04-2017 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 A4U88_RS16495 c0eea9c0ef75d9e8143ef40e0857276f 341 Pfam PF03916 Polysulphide reductase, NrfD 11 291 1.4E-31 T 25-04-2017 IPR005614 NrfD family A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 4.6E-6 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 4.6E-6 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 186 4.1E-54 T 25-04-2017 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 SUPERFAMILY SSF52317 3 191 2.29E-45 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00097 Anthranilate synthase component II signature 4 18 9.3E-36 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00097 Anthranilate synthase component II signature 166 179 9.3E-36 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00097 Anthranilate synthase component II signature 124 136 9.3E-36 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00097 Anthranilate synthase component II signature 52 61 9.3E-36 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00097 Anthranilate synthase component II signature 104 112 9.3E-36 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00097 Anthranilate synthase component II signature 79 90 9.3E-36 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 Pfam PF00117 Glutamine amidotransferase class-I 6 186 1.9E-43 T 25-04-2017 IPR017926 Glutamine amidotransferase A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 4.9E-14 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 4.9E-14 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.9E-14 T 25-04-2017 A4U88_RS13015 4500d0bca6893255085dcee3ad385373 193 Gene3D G3DSA:3.40.50.880 3 189 5.1E-56 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS04595 576fa1274749e86726b5ef8f5966004d 153 Pfam PF00583 Acetyltransferase (GNAT) family 59 128 1.5E-10 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS04595 576fa1274749e86726b5ef8f5966004d 153 Gene3D G3DSA:3.40.630.30 11 153 2.5E-20 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS04595 576fa1274749e86726b5ef8f5966004d 153 SUPERFAMILY SSF55729 14 151 1.55E-21 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09510 3bc20f3ef142c7cc2ebbfc37043fa457 280 PIRSF PIRSF038992 1 280 5.3E-64 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS09510 3bc20f3ef142c7cc2ebbfc37043fa457 280 SMART SM01133 18 250 2.4E-12 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS09510 3bc20f3ef142c7cc2ebbfc37043fa457 280 Pfam PF01791 DeoC/LacD family aldolase 19 250 7.6E-40 T 25-04-2017 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 A4U88_RS09510 3bc20f3ef142c7cc2ebbfc37043fa457 280 Gene3D G3DSA:3.20.20.70 4 276 1.5E-65 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS09510 3bc20f3ef142c7cc2ebbfc37043fa457 280 SUPERFAMILY SSF51569 6 266 4.03E-53 T 25-04-2017 A4U88_RS09260 988017a42796a309503cc5747303325a 434 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 21 426 35.712 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 34 394 3.8E-98 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 139 158 4.9E-35 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 214 237 4.9E-35 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 111 137 4.9E-35 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 316 335 4.9E-35 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 PRINTS PR00447 Natural resistance-associated macrophage protein signature 164 185 4.9E-35 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS09260 988017a42796a309503cc5747303325a 434 Pfam PF01566 Natural resistance-associated macrophage protein 52 400 7.6E-124 T 25-04-2017 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-425410 A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 Pfam PF04273 Putative phosphatase (DUF442) 3 109 5.6E-19 T 25-04-2017 IPR005939 Beta-lactamase hydrolase-like GO:0016787 A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 SUPERFAMILY SSF56281 153 391 2.03E-42 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 Gene3D G3DSA:3.60.15.10 149 384 8.7E-44 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 Gene3D G3DSA:3.90.190.10 1 130 1.4E-26 T 25-04-2017 IPR029021 Protein-tyrosine phosphatase-like A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 SMART SM00849 157 346 4.6E-19 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 SUPERFAMILY SSF52799 10 147 3.58E-9 T 25-04-2017 IPR029021 Protein-tyrosine phosphatase-like A4U88_RS11700 b71dba982920c781c2174d046b02629b 429 Pfam PF00753 Metallo-beta-lactamase superfamily 160 346 2.5E-19 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS06250 a8798b669cf92cb294a56cd4c303886e 133 Pfam PF06803 Protein of unknown function (DUF1232) 41 77 5.2E-14 T 25-04-2017 IPR010652 Protein of unknown function DUF1232 A4U88_RS03155 8ec41a9dfec31939325e844c7175cb45 154 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 154 35.643 T 25-04-2017 IPR020914 Uncharacterised protein family UPF0442 A4U88_RS03155 8ec41a9dfec31939325e844c7175cb45 154 Pfam PF12821 Threonine/Serine exporter, ThrE 11 144 2.4E-34 T 25-04-2017 IPR024528 Threonine/Serine exporter, ThrE A4U88_RS13830 1d5021f260a783fd26ca8ae6972b72e1 38 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 3.8E-29 T 25-04-2017 IPR019672 Protein of unknown function DUF2627 A4U88_RS12370 6d8eb187277717c8908cbacc8bc7de0d 177 Gene3D G3DSA:3.30.530.20 11 177 4.7E-39 T 25-04-2017 IPR023393 START-like domain A4U88_RS12370 6d8eb187277717c8908cbacc8bc7de0d 177 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 22 151 3.1E-17 T 25-04-2017 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 A4U88_RS12370 6d8eb187277717c8908cbacc8bc7de0d 177 SUPERFAMILY SSF55961 2 177 6.08E-40 T 25-04-2017 A4U88_RS18015 394f3859a42d7a41b6059fec10359d7e 270 Gene3D G3DSA:3.40.50.300 17 262 1.2E-66 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18015 394f3859a42d7a41b6059fec10359d7e 270 SUPERFAMILY SSF52540 23 257 1.45E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS18015 394f3859a42d7a41b6059fec10359d7e 270 Pfam PF00005 ABC transporter 39 195 3.4E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS18015 394f3859a42d7a41b6059fec10359d7e 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 270 2.0E-118 T 25-04-2017 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 A4U88_RS18015 394f3859a42d7a41b6059fec10359d7e 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS18015 394f3859a42d7a41b6059fec10359d7e 270 SMART SM00382 48 242 2.8E-13 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13655 5ba634f1ffc42a02c7902c71a2c0bf89 606 SUPERFAMILY SSF51126 73 398 1.45E-7 T 25-04-2017 IPR011050 Pectin lyase fold/virulence factor A4U88_RS12120 fe993c70a46c2463893bb77dc8496683 641 Pfam PF01841 Transglutaminase-like superfamily 271 344 1.6E-8 T 25-04-2017 IPR002931 Transglutaminase-like A4U88_RS12120 fe993c70a46c2463893bb77dc8496683 641 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 57 224 1.0E-33 T 25-04-2017 IPR024618 Domain of unknown function DUF3857 A4U88_RS12120 fe993c70a46c2463893bb77dc8496683 641 SUPERFAMILY SSF54001 265 371 6.87E-10 T 25-04-2017 A4U88_RS05520 fbae3a3cd8af9ea6b8b11803dbf2254c 169 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 135 1.3E-13 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS05520 fbae3a3cd8af9ea6b8b11803dbf2254c 169 Gene3D G3DSA:3.10.180.10 5 137 1.7E-29 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS05520 fbae3a3cd8af9ea6b8b11803dbf2254c 169 SUPERFAMILY SSF54593 1 139 1.18E-26 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS00340 9abe46238eb82145bf10768fe8a8e39b 251 Pfam PF01909 Nucleotidyltransferase domain 35 77 1.9E-6 T 25-04-2017 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 A4U88_RS00340 9abe46238eb82145bf10768fe8a8e39b 251 SUPERFAMILY SSF81301 36 106 2.52E-9 T 25-04-2017 A4U88_RS00340 9abe46238eb82145bf10768fe8a8e39b 251 Gene3D G3DSA:3.30.460.10 22 126 1.5E-17 T 25-04-2017 A4U88_RS07645 84dcb6e94760cb29e9ea6dcaa247404c 610 Pfam PF05170 AsmA family 4 268 8.8E-21 T 25-04-2017 IPR007844 AsmA A4U88_RS07645 84dcb6e94760cb29e9ea6dcaa247404c 610 Pfam PF13502 AsmA-like C-terminal region 351 535 3.6E-22 T 25-04-2017 IPR032712 AsmA-like, C-terminal A4U88_RS00370 9c8adea9c6cede61271525e3813ddaf2 464 Pfam PF04966 Carbohydrate-selective porin, OprB family 92 464 4.1E-68 T 25-04-2017 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 A4U88_RS12935 91c07d1d04b35b779db69fb0cd37dba3 197 SUPERFAMILY SSF142695 3 173 2.48E-66 T 25-04-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 A4U88_RS12935 91c07d1d04b35b779db69fb0cd37dba3 197 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 48.111 T 25-04-2017 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 A4U88_RS12935 91c07d1d04b35b779db69fb0cd37dba3 197 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 5.9E-92 T 25-04-2017 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 A4U88_RS12935 91c07d1d04b35b779db69fb0cd37dba3 197 Pfam PF00925 GTP cyclohydrolase II 4 170 2.3E-68 T 25-04-2017 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 A4U88_RS02090 0ae5b5c1d5c975fc85559620a03c9161 200 Gene3D G3DSA:2.160.10.10 17 191 1.3E-44 T 25-04-2017 A4U88_RS02090 0ae5b5c1d5c975fc85559620a03c9161 200 TIGRFAM TIGR03308 phn_thr-fam: phosphonate metabolim protein, transferase hexapeptide repeat family 6 199 3.9E-79 T 25-04-2017 IPR017694 Phosphonate metabolim protein, transferase hexapeptide repeat family A4U88_RS02090 0ae5b5c1d5c975fc85559620a03c9161 200 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 115 143 - T 25-04-2017 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 A4U88_RS02090 0ae5b5c1d5c975fc85559620a03c9161 200 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 106 141 3.8E-8 T 25-04-2017 IPR001451 Hexapeptide repeat A4U88_RS02090 0ae5b5c1d5c975fc85559620a03c9161 200 SUPERFAMILY SSF51161 9 197 5.77E-37 T 25-04-2017 IPR011004 Trimeric LpxA-like A4U88_RS07335 d53fabb39200d23324270e07757c2e0b 258 Pfam PF00174 Oxidoreductase molybdopterin binding domain 104 247 7.0E-30 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS07335 d53fabb39200d23324270e07757c2e0b 258 SUPERFAMILY SSF56524 58 257 2.35E-61 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS07335 d53fabb39200d23324270e07757c2e0b 258 Gene3D G3DSA:3.90.420.10 97 256 9.7E-51 T 25-04-2017 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 A4U88_RS18665 ef669d5c1335ee9196275af315350bd7 217 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 3.4E-37 T 25-04-2017 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 A4U88_RS18665 ef669d5c1335ee9196275af315350bd7 217 PIRSF PIRSF016938 1 205 1.2E-33 T 25-04-2017 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0006950|GO:0016989 A4U88_RS18665 ef669d5c1335ee9196275af315350bd7 217 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 187 4.3E-24 T 25-04-2017 IPR005573 Anti sigma-E protein RseA, C-terminal A4U88_RS18665 ef669d5c1335ee9196275af315350bd7 217 SUPERFAMILY SSF89069 1 66 8.11E-21 T 25-04-2017 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 A4U88_RS01770 ab71021300b57111ff0223661063ac51 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 1.8E-21 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS01770 ab71021300b57111ff0223661063ac51 206 Gene3D G3DSA:1.10.287.460 2 89 2.4E-23 T 25-04-2017 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 A4U88_RS01770 ab71021300b57111ff0223661063ac51 206 SUPERFAMILY SSF54534 8 205 1.06E-53 T 25-04-2017 A4U88_RS01770 ab71021300b57111ff0223661063ac51 206 Gene3D G3DSA:3.10.50.40 90 205 6.9E-48 T 25-04-2017 A4U88_RS01770 ab71021300b57111ff0223661063ac51 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 5.8E-26 T 25-04-2017 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 A4U88_RS07460 6222c8854e2ad1e7c8d7bc14e1563052 217 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 25-04-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07460 6222c8854e2ad1e7c8d7bc14e1563052 217 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 25-04-2017 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07460 6222c8854e2ad1e7c8d7bc14e1563052 217 Gene3D G3DSA:3.40.1050.10 1 202 2.3E-67 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07460 6222c8854e2ad1e7c8d7bc14e1563052 217 SUPERFAMILY SSF53056 1 203 1.3E-64 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07460 6222c8854e2ad1e7c8d7bc14e1563052 217 Pfam PF00484 Carbonic anhydrase 34 188 2.3E-48 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS07460 6222c8854e2ad1e7c8d7bc14e1563052 217 SMART SM00947 27 193 1.5E-66 T 25-04-2017 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 A4U88_RS01160 e93a15e2131d5232ad572574b6c21f6d 165 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 25-04-2017 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS01160 e93a15e2131d5232ad572574b6c21f6d 165 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 155 5.0E-4 T 25-04-2017 A4U88_RS01160 e93a15e2131d5232ad572574b6c21f6d 165 Pfam PF00466 Ribosomal protein L10 5 101 2.1E-26 T 25-04-2017 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 A4U88_RS01160 e93a15e2131d5232ad572574b6c21f6d 165 SUPERFAMILY SSF160369 4 161 6.93E-49 T 25-04-2017 A4U88_RS01160 e93a15e2131d5232ad572574b6c21f6d 165 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.782 T 25-04-2017 IPR022973 Ribosomal protein L10 A4U88_RS02265 d58079f374154900a42f01fde4baa9ad 167 Gene3D G3DSA:3.40.630.30 9 167 5.3E-34 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02265 d58079f374154900a42f01fde4baa9ad 167 Pfam PF00583 Acetyltransferase (GNAT) family 66 145 6.9E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS02265 d58079f374154900a42f01fde4baa9ad 167 SUPERFAMILY SSF55729 9 167 8.23E-32 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS05905 aaf5618d519304bb0c11c7100977b647 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 233 3.8E-57 T 25-04-2017 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 A4U88_RS05905 aaf5618d519304bb0c11c7100977b647 247 SUPERFAMILY SSF102705 1 246 1.15E-83 T 25-04-2017 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 A4U88_RS05905 aaf5618d519304bb0c11c7100977b647 247 Gene3D G3DSA:3.40.1390.30 108 214 3.2E-29 T 25-04-2017 A4U88_RS05905 aaf5618d519304bb0c11c7100977b647 247 Gene3D G3DSA:3.40.1390.30 1 107 3.6E-37 T 25-04-2017 A4U88_RS05905 aaf5618d519304bb0c11c7100977b647 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 1.8E-72 T 25-04-2017 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 A4U88_RS23060 3668ac5b12d5a1b0e240c7c119134cb5 982 PIRSF PIRSF034585 2 982 0.0 T 25-04-2017 IPR009216 Virulence factor SrfB A4U88_RS23060 3668ac5b12d5a1b0e240c7c119134cb5 982 Pfam PF07520 Virulence factor SrfB 2 979 0.0 T 25-04-2017 IPR009216 Virulence factor SrfB A4U88_RS08275 069b8053295a934c9207f8d296f7106d 121 Pfam PF08818 Domain of unknown function (DU1801) 25 115 5.5E-12 T 25-04-2017 IPR014922 Domain of unknown function DUF1801 A4U88_RS08275 069b8053295a934c9207f8d296f7106d 121 SUPERFAMILY SSF159888 19 118 2.35E-11 T 25-04-2017 A4U88_RS16410 de49f731a01e4dba7a6aa0673281356e 191 SUPERFAMILY SSF54001 70 188 7.19E-39 T 25-04-2017 A4U88_RS16410 de49f731a01e4dba7a6aa0673281356e 191 Gene3D G3DSA:3.90.1720.10 71 188 7.5E-43 T 25-04-2017 IPR000064 Endopeptidase, NLPC/P60 domain A4U88_RS16410 de49f731a01e4dba7a6aa0673281356e 191 Pfam PF00877 NlpC/P60 family 82 186 7.4E-32 T 25-04-2017 IPR000064 Endopeptidase, NLPC/P60 domain A4U88_RS18660 74b1704026e669339324d76cf33cad80 318 Gene3D G3DSA:2.50.20.10 125 184 2.9E-8 T 25-04-2017 A4U88_RS18660 74b1704026e669339324d76cf33cad80 318 Pfam PF03888 MucB/RseB N-terminal domain 29 197 1.3E-60 T 25-04-2017 IPR033434 MucB/RseB, N-terminal A4U88_RS18660 74b1704026e669339324d76cf33cad80 318 Pfam PF17188 MucB/RseB C-terminal domain 220 312 7.6E-27 T 25-04-2017 IPR033436 MucB/RseB, C-terminal A4U88_RS18660 74b1704026e669339324d76cf33cad80 318 PIRSF PIRSF005427 2 318 3.3E-89 T 25-04-2017 IPR005588 MucB/RseB A4U88_RS04690 b3c711413fea3372ff562b1daa49ea84 96 SUPERFAMILY SSF51182 1 94 1.09E-31 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS04690 b3c711413fea3372ff562b1daa49ea84 96 Hamap MF_01537 UPF0345 protein YaiE [yaiE]. 1 94 25.074 T 25-04-2017 IPR009664 Protein of unknown function DUF1255 A4U88_RS04690 b3c711413fea3372ff562b1daa49ea84 96 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 3.3E-32 T 25-04-2017 IPR009664 Protein of unknown function DUF1255 A4U88_RS04690 b3c711413fea3372ff562b1daa49ea84 96 Gene3D G3DSA:2.60.120.10 1 94 3.7E-35 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS16025 4f5b8dd8b15e2e1f78d1e889f7589900 402 Pfam PF14486 Domain of unknown function (DUF4432) 63 368 6.0E-111 T 25-04-2017 IPR027839 Protein of unknown function DUF4432 A4U88_RS06775 fc580b678f66e6094f44b671be1bec98 175 Pfam PF00857 Isochorismatase family 3 139 1.6E-33 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS06775 fc580b678f66e6094f44b671be1bec98 175 SUPERFAMILY SSF52499 2 169 3.27E-42 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS06775 fc580b678f66e6094f44b671be1bec98 175 Gene3D G3DSA:3.40.50.850 1 173 1.2E-42 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS17220 5b3cddc708b13a926c583fdfabd26c28 98 Gene3D G3DSA:3.30.70.860 27 98 3.5E-35 T 25-04-2017 A4U88_RS17220 5b3cddc708b13a926c583fdfabd26c28 98 Pfam PF04175 Protein of unknown function (DUF406) 7 98 3.2E-41 T 25-04-2017 IPR005272 Conserved hypothetical protein CHP00743 A4U88_RS17220 5b3cddc708b13a926c583fdfabd26c28 98 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 5 98 1.2E-42 T 25-04-2017 IPR005272 Conserved hypothetical protein CHP00743 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 3.7E-80 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 65 85 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 107 127 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 128 149 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 3 22 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 44 64 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 86 106 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PRINTS PR00601 Bacterioferritin signature 23 43 7.8E-77 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 SUPERFAMILY SSF47240 1 154 2.02E-53 T 25-04-2017 IPR009078 Ferritin-like superfamily A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 PIRSF PIRSF002560 1 157 1.2E-70 T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 Gene3D G3DSA:1.20.1260.10 1 154 8.5E-65 T 25-04-2017 IPR012347 Ferritin-related A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 Pfam PF00210 Ferritin-like domain 8 143 6.2E-40 T 25-04-2017 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 A4U88_RS22355 62ea3a15836e69e9da8caab61d25d83d 159 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 25-04-2017 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 A4U88_RS20890 77d18187d3b48e30b233bd89269faabc 194 Pfam PF05728 Uncharacterised protein family (UPF0227) 5 189 2.6E-69 T 25-04-2017 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA A4U88_RS20890 77d18187d3b48e30b233bd89269faabc 194 SUPERFAMILY SSF53474 4 189 8.34E-18 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS20890 77d18187d3b48e30b233bd89269faabc 194 Gene3D G3DSA:3.40.50.1820 4 186 4.5E-16 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS18950 38b31ac9b6989c9d3aa41b54b2fe2d0e 64 Pfam PF06945 Protein of unknown function (DUF1289) 14 60 1.6E-18 T 25-04-2017 IPR010710 Protein of unknown function DUF1289 A4U88_RS18055 0dc0ecbe4caa2e51e5fe775513eed445 117 Gene3D G3DSA:1.10.10.10 3 64 6.3E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18055 0dc0ecbe4caa2e51e5fe775513eed445 117 Pfam PF02316 Mu DNA-binding domain 11 60 2.2E-12 T 25-04-2017 IPR003314 Mu-type HTH domain GO:0003677 A4U88_RS18055 0dc0ecbe4caa2e51e5fe775513eed445 117 SUPERFAMILY SSF46955 3 60 7.78E-20 T 25-04-2017 IPR009061 Putative DNA-binding domain A4U88_RS18055 0dc0ecbe4caa2e51e5fe775513eed445 117 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 22 111 0.008 T 25-04-2017 IPR010749 Protein of unknown function DUF1323 A4U88_RS03405 da6c3c02861122579092eaa333fbbcd4 176 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 175 7.0E-61 T 25-04-2017 IPR009502 Secretion monitor GO:0045182 A4U88_RS03405 da6c3c02861122579092eaa333fbbcd4 176 Hamap MF_01332 Secretion monitor [secM]. 1 176 41.178 T 25-04-2017 IPR009502 Secretion monitor GO:0045182 A4U88_RS03405 da6c3c02861122579092eaa333fbbcd4 176 PIRSF PIRSF004572 1 176 4.2E-75 T 25-04-2017 IPR009502 Secretion monitor GO:0045182 A4U88_RS03405 da6c3c02861122579092eaa333fbbcd4 176 Pfam PF06558 Secretion monitor precursor protein (SecM) 24 173 3.0E-56 T 25-04-2017 IPR009502 Secretion monitor GO:0045182 A4U88_RS02410 d739f2246c2392a96cd12a118bab233c 364 Gene3D G3DSA:3.20.20.30 7 360 4.1E-95 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS02410 d739f2246c2392a96cd12a118bab233c 364 Pfam PF00296 Luciferase-like monooxygenase 12 330 5.5E-68 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS02410 d739f2246c2392a96cd12a118bab233c 364 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 11 358 3.0E-181 T 25-04-2017 IPR024014 Dimethyl sulphone monooxygenase SfnG A4U88_RS02410 d739f2246c2392a96cd12a118bab233c 364 SUPERFAMILY SSF51679 8 358 1.96E-84 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS22700 718a0e43f5f4024dc22539afc8306440 135 SMART SM00363 11 74 2.1E-9 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS22700 718a0e43f5f4024dc22539afc8306440 135 PIRSF PIRSF016821 8 135 4.1E-42 T 25-04-2017 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 A4U88_RS22700 718a0e43f5f4024dc22539afc8306440 135 SUPERFAMILY SSF55174 11 105 2.62E-29 T 25-04-2017 A4U88_RS22700 718a0e43f5f4024dc22539afc8306440 135 Gene3D G3DSA:3.10.290.10 9 105 1.7E-37 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS22700 718a0e43f5f4024dc22539afc8306440 135 Pfam PF01479 S4 domain 11 56 3.1E-12 T 25-04-2017 IPR002942 RNA-binding S4 domain GO:0003723 A4U88_RS08720 d5c12d6433889ec54ae64037900bf6db 199 Pfam PF03358 NADPH-dependent FMN reductase 13 143 1.4E-12 T 25-04-2017 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 A4U88_RS08720 d5c12d6433889ec54ae64037900bf6db 199 Gene3D G3DSA:3.40.50.360 1 198 2.9E-72 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08720 d5c12d6433889ec54ae64037900bf6db 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 2 197 3.4E-98 T 25-04-2017 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 A4U88_RS08720 d5c12d6433889ec54ae64037900bf6db 199 SUPERFAMILY SSF52218 1 198 4.06E-60 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS08720 d5c12d6433889ec54ae64037900bf6db 199 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 1 199 39.725 T 25-04-2017 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 A4U88_RS22265 c039418685ee9661feed6bbadd31e155 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 4.9E-46 T 25-04-2017 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22265 c039418685ee9661feed6bbadd31e155 117 SUPERFAMILY SSF53137 3 115 1.33E-53 T 25-04-2017 A4U88_RS22265 c039418685ee9661feed6bbadd31e155 117 Gene3D G3DSA:3.30.420.100 24 117 5.7E-37 T 25-04-2017 A4U88_RS22265 c039418685ee9661feed6bbadd31e155 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.177 T 25-04-2017 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22265 c039418685ee9661feed6bbadd31e155 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 8.9E-44 T 25-04-2017 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS08670 0fe3a1aa7893464f019df175c316e6a0 356 Gene3D G3DSA:2.60.40.1090 203 355 1.5E-14 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS08670 0fe3a1aa7893464f019df175c316e6a0 356 Pfam PF00419 Fimbrial protein 197 355 1.2E-14 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS08670 0fe3a1aa7893464f019df175c316e6a0 356 SUPERFAMILY SSF49401 204 356 1.34E-13 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS02725 44f7ac6b995d734359fb8f9e40f1ec67 171 Gene3D G3DSA:2.30.110.10 10 163 7.5E-49 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS02725 44f7ac6b995d734359fb8f9e40f1ec67 171 SMART SM00903 15 162 5.8E-50 T 25-04-2017 IPR002563 Flavin reductase like domain GO:0010181 A4U88_RS02725 44f7ac6b995d734359fb8f9e40f1ec67 171 SUPERFAMILY SSF50475 10 163 8.83E-47 T 25-04-2017 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 A4U88_RS02725 44f7ac6b995d734359fb8f9e40f1ec67 171 Pfam PF01613 Flavin reductase like domain 15 163 2.2E-26 T 25-04-2017 IPR002563 Flavin reductase like domain GO:0010181 A4U88_RS02725 44f7ac6b995d734359fb8f9e40f1ec67 171 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 11 163 6.0E-76 T 25-04-2017 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 A4U88_RS00455 3d223db0acebd8bc2034b4192e76971a 551 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 21 549 7.6E-235 T 25-04-2017 IPR017744 Cellulose biosynthesis protein BcsG A4U88_RS00455 3d223db0acebd8bc2034b4192e76971a 551 Pfam PF11658 Cellulose biosynthesis protein BcsG 23 546 2.5E-239 T 25-04-2017 IPR017744 Cellulose biosynthesis protein BcsG A4U88_RS06180 a5a85827e23e89d83691bf8bcf6d5eca 331 SUPERFAMILY SSF53807 39 315 3.45E-36 T 25-04-2017 A4U88_RS06180 a5a85827e23e89d83691bf8bcf6d5eca 331 Pfam PF01497 Periplasmic binding protein 51 295 2.0E-18 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS06180 a5a85827e23e89d83691bf8bcf6d5eca 331 Gene3D G3DSA:3.40.50.1980 39 179 2.1E-11 T 25-04-2017 A4U88_RS06180 a5a85827e23e89d83691bf8bcf6d5eca 331 Gene3D G3DSA:3.40.50.1980 182 315 1.1E-19 T 25-04-2017 A4U88_RS02010 8a6b6433a31aab8d7362dbd96bc13b40 341 Pfam PF00296 Luciferase-like monooxygenase 30 309 3.9E-33 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS02010 8a6b6433a31aab8d7362dbd96bc13b40 341 SUPERFAMILY SSF51679 12 332 8.48E-88 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS02010 8a6b6433a31aab8d7362dbd96bc13b40 341 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 13 332 9.9E-139 T 25-04-2017 IPR019949 Luciferase family oxidoreductase, group 1 A4U88_RS02010 8a6b6433a31aab8d7362dbd96bc13b40 341 Gene3D G3DSA:3.20.20.30 12 332 1.7E-92 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 SUPERFAMILY SSF103473 1 402 7.98E-37 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 281 307 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 343 363 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 212 240 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 68 97 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 145 163 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 312 331 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 257 278 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 PRINTS PR00174 LacY proton/sugar symporter family signature 103 125 4.2E-79 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 Gene3D G3DSA:1.20.1250.20 206 405 2.3E-38 T 25-04-2017 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 Gene3D G3DSA:1.20.1250.20 8 189 1.1E-28 T 25-04-2017 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 Pfam PF01306 LacY proton/sugar symporter 5 403 1.1E-136 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS10160 578cb885ad4647e21639b28588707e17 419 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 7 397 4.3E-136 T 25-04-2017 IPR000576 LacY/RafB permease family GO:0006810|GO:0016020 A4U88_RS05255 2315fea346223eda52e5386b5f49e5b8 245 Pfam PF03301 Tryptophan 2,3-dioxygenase 187 243 7.3E-17 T 25-04-2017 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 A4U88_RS05255 2315fea346223eda52e5386b5f49e5b8 245 Pfam PF03301 Tryptophan 2,3-dioxygenase 1 131 2.7E-30 T 25-04-2017 IPR004981 Tryptophan 2,3-dioxygenase GO:0004833|GO:0019441|GO:0020037 KEGG: 00380+1.13.11.11|Reactome: R-HSA-71240 A4U88_RS05255 2315fea346223eda52e5386b5f49e5b8 245 SUPERFAMILY SSF140959 2 243 1.16E-63 T 25-04-2017 A4U88_RS12610 2192e9359cc01c4385342efd71f72189 142 Pfam PF03724 META domain 30 133 1.7E-18 T 25-04-2017 IPR005184 Domain of unknown function DUF306, Meta/HslJ A4U88_RS20100 709995add57b9e3cf96bc32ed2fb0400 431 Pfam PF07690 Major Facilitator Superfamily 26 387 1.8E-59 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS20100 709995add57b9e3cf96bc32ed2fb0400 431 Gene3D G3DSA:1.20.1250.20 17 213 1.2E-45 T 25-04-2017 A4U88_RS20100 709995add57b9e3cf96bc32ed2fb0400 431 SUPERFAMILY SSF103473 13 421 6.8E-91 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS20100 709995add57b9e3cf96bc32ed2fb0400 431 PIRSF PIRSF002808 1 431 4.2E-35 T 25-04-2017 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 A4U88_RS20100 709995add57b9e3cf96bc32ed2fb0400 431 Gene3D G3DSA:1.20.1250.20 236 420 7.6E-27 T 25-04-2017 A4U88_RS08150 acdb45a56d764b82de46589e796aea15 115 Pfam PF06961 Protein of unknown function (DUF1294) 33 87 1.7E-24 T 25-04-2017 IPR010718 Protein of unknown function DUF1294 A4U88_RS16630 52ca13ee3caa73b2f1a55c8b0635126f 155 Gene3D G3DSA:3.10.450.50 11 153 7.9E-75 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS16630 52ca13ee3caa73b2f1a55c8b0635126f 155 Pfam PF07080 Protein of unknown function (DUF1348) 4 145 1.2E-71 T 25-04-2017 IPR009783 Protein of unknown function DUF1348 A4U88_RS16630 52ca13ee3caa73b2f1a55c8b0635126f 155 SUPERFAMILY SSF54427 2 155 3.83E-77 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS17785 1f86b156166d34b7fd2ecd9a37f7a4e7 422 Gene3D G3DSA:1.20.1250.20 13 197 2.5E-19 T 25-04-2017 A4U88_RS17785 1f86b156166d34b7fd2ecd9a37f7a4e7 422 Gene3D G3DSA:1.20.1250.20 222 405 5.6E-21 T 25-04-2017 A4U88_RS17785 1f86b156166d34b7fd2ecd9a37f7a4e7 422 SUPERFAMILY SSF103473 15 408 2.49E-45 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS17785 1f86b156166d34b7fd2ecd9a37f7a4e7 422 Pfam PF07690 Major Facilitator Superfamily 36 335 2.7E-20 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS23005 7d8ea8368e763b7ccb4d85fcf7b49c7d 334 SUPERFAMILY SSF49401 204 334 3.08E-18 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS23005 7d8ea8368e763b7ccb4d85fcf7b49c7d 334 Pfam PF00419 Fimbrial protein 194 334 1.2E-23 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS23005 7d8ea8368e763b7ccb4d85fcf7b49c7d 334 Gene3D G3DSA:2.60.40.1090 205 333 9.0E-7 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS21155 66ac324b07f4bde31be73f18343593ad 470 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 48.946 T 25-04-2017 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 A4U88_RS21155 66ac324b07f4bde31be73f18343593ad 470 SUPERFAMILY SSF51556 3 465 8.84E-180 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS21155 66ac324b07f4bde31be73f18343593ad 470 Gene3D G3DSA:3.20.20.140 4 44 1.8E-160 T 25-04-2017 A4U88_RS21155 66ac324b07f4bde31be73f18343593ad 470 Gene3D G3DSA:3.20.20.140 139 466 1.8E-160 T 25-04-2017 A4U88_RS21155 66ac324b07f4bde31be73f18343593ad 470 Gene3D G3DSA:1.10.2020.10 46 137 3.4E-41 T 25-04-2017 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 A4U88_RS21155 66ac324b07f4bde31be73f18343593ad 470 Pfam PF02614 Glucuronate isomerase 1 465 1.6E-221 T 25-04-2017 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 A4U88_RS16565 d37b0e8f4ce7c173f2eff8f825ae744f 122 Pfam PF16462 Phage tail assembly chaperone protein, TAC 10 120 1.0E-39 T 25-04-2017 IPR024410 Phage tail assembly chaperone protein, TAC A4U88_RS06020 e06511651891ca651f0d3c997423a3ac 227 TIGRFAM TIGR02796 tolQ: protein TolQ 5 219 1.2E-94 T 25-04-2017 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 A4U88_RS06020 e06511651891ca651f0d3c997423a3ac 227 Pfam PF01618 MotA/TolQ/ExbB proton channel family 79 207 1.4E-42 T 25-04-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 A4U88_RS02840 53936858c258494a7de6359b5bf17d5c 147 SUPERFAMILY SSF55729 3 146 2.1E-32 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02840 53936858c258494a7de6359b5bf17d5c 147 Gene3D G3DSA:3.40.630.30 3 146 6.4E-34 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02840 53936858c258494a7de6359b5bf17d5c 147 Pfam PF00583 Acetyltransferase (GNAT) family 48 120 1.1E-16 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS02840 53936858c258494a7de6359b5bf17d5c 147 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 142 5.5E-43 T 25-04-2017 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 69 80 3.7E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 122 130 3.7E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 3.7E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 Gene3D G3DSA:3.40.50.720 2 245 2.3E-77 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 SUPERFAMILY SSF51735 5 245 1.15E-75 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 245 9.5E-60 T 25-04-2017 A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 69 80 1.0E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.0E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 1.0E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 1.0E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.0E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02740 21f681ac31461b70fe66a9b7f7abb5d0 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 116 132 1.0E-39 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS02580 d27db8b684746c0d73d038af6a1d4a99 502 Gene3D G3DSA:3.40.309.10 258 453 1.1E-62 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS02580 d27db8b684746c0d73d038af6a1d4a99 502 SUPERFAMILY SSF53720 2 484 2.75E-144 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS02580 d27db8b684746c0d73d038af6a1d4a99 502 Pfam PF00171 Aldehyde dehydrogenase family 17 480 3.5E-137 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS02580 d27db8b684746c0d73d038af6a1d4a99 502 Gene3D G3DSA:3.40.605.10 2 257 5.2E-85 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS02580 d27db8b684746c0d73d038af6a1d4a99 502 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 484 4.9E-188 T 25-04-2017 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373|Reactome: R-HSA-70895 A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 SUPERFAMILY SSF52467 167 334 5.56E-29 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 SUPERFAMILY SSF52518 5 183 3.29E-43 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 Gene3D G3DSA:3.40.50.970 4 180 3.0E-75 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 Gene3D G3DSA:3.40.50.1220 191 345 2.1E-47 T 25-04-2017 IPR029035 DHS-like NAD/FAD-binding domain A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 177 2.2E-33 T 25-04-2017 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 Gene3D G3DSA:3.40.50.970 354 539 3.2E-56 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 418 437 - T 25-04-2017 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 PIRSF PIRSF036565 1 552 6.7E-202 T 25-04-2017 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 528 1.3E-18 T 25-04-2017 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 323 4.8E-17 T 25-04-2017 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 A4U88_RS17445 0767ea3ed523a89166d553cc8b64f583 553 SUPERFAMILY SSF52518 356 540 2.03E-44 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS19540 424ef28927fef3216bb1ca947c5237fd 294 SUPERFAMILY SSF56281 26 248 1.4E-41 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS19540 424ef28927fef3216bb1ca947c5237fd 294 Pfam PF00753 Metallo-beta-lactamase superfamily 41 227 2.9E-9 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS19540 424ef28927fef3216bb1ca947c5237fd 294 SMART SM00849 41 227 2.4E-21 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS19540 424ef28927fef3216bb1ca947c5237fd 294 Gene3D G3DSA:3.60.15.10 30 253 4.3E-40 T 25-04-2017 IPR001279 Metallo-beta-lactamase A4U88_RS10600 c06eecb0d50e068b7a88ecb61f6bfacf 276 SUPERFAMILY SSF53807 24 271 1.18E-50 T 25-04-2017 A4U88_RS10600 c06eecb0d50e068b7a88ecb61f6bfacf 276 Pfam PF01497 Periplasmic binding protein 27 251 4.8E-27 T 25-04-2017 IPR002491 ABC transporter periplasmic binding domain GO:0005488 A4U88_RS10600 c06eecb0d50e068b7a88ecb61f6bfacf 276 Gene3D G3DSA:3.40.50.1980 144 272 2.5E-16 T 25-04-2017 A4U88_RS10600 c06eecb0d50e068b7a88ecb61f6bfacf 276 Gene3D G3DSA:3.40.50.1980 24 143 6.5E-28 T 25-04-2017 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 SUPERFAMILY SSF56322 8 451 4.71E-144 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 Pfam PF04715 Anthranilate synthase component I, N terminal region 18 154 7.9E-27 T 25-04-2017 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 107 445 4.4E-129 T 25-04-2017 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 PRINTS PR00095 Anthranilate synthase component I signature 305 318 2.2E-17 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 PRINTS PR00095 Anthranilate synthase component I signature 291 304 2.2E-17 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 PRINTS PR00095 Anthranilate synthase component I signature 400 414 2.2E-17 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 PRINTS PR00095 Anthranilate synthase component I signature 385 399 2.2E-17 T 25-04-2017 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 Gene3D G3DSA:3.60.120.10 22 451 8.4E-153 T 25-04-2017 IPR005801 ADC synthase GO:0009058 A4U88_RS13765 534eb830efd7f1f8f4a799c5d3c552d1 457 Pfam PF00425 chorismate binding enzyme 189 443 1.1E-95 T 25-04-2017 IPR015890 Chorismate-utilising enzyme, C-terminal A4U88_RS20535 35f0248dd8443716a727415d055e9d22 170 Pfam PF10263 SprT-like family 20 164 2.3E-28 T 25-04-2017 IPR006640 SprT-like A4U88_RS20535 35f0248dd8443716a727415d055e9d22 170 SMART SM00731 16 165 1.4E-59 T 25-04-2017 IPR006640 SprT-like A4U88_RS20535 35f0248dd8443716a727415d055e9d22 170 Hamap MF_00746 Protein SprT [sprT]. 12 165 40.604 T 25-04-2017 IPR023483 Uncharacterised protein family SprT A4U88_RS04400 ec8ada6433b3ccc51412af473316be51 533 SUPERFAMILY SSF53850 30 524 1.99E-146 T 25-04-2017 A4U88_RS04400 ec8ada6433b3ccc51412af473316be51 533 Gene3D G3DSA:3.90.76.10 39 219 2.5E-45 T 25-04-2017 A4U88_RS04400 ec8ada6433b3ccc51412af473316be51 533 PIRSF PIRSF002741 5 532 4.5E-109 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS04400 ec8ada6433b3ccc51412af473316be51 533 Gene3D G3DSA:3.10.105.10 290 503 2.6E-68 T 25-04-2017 A4U88_RS04400 ec8ada6433b3ccc51412af473316be51 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 447 2.3E-95 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 Pfam PF12566 Protein of unknown function (DUF3748) 67 187 2.8E-58 T 25-04-2017 IPR022223 Protein of unknown function DUF3748 A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 Pfam PF07676 WD40-like Beta Propeller Repeat 401 423 0.0053 T 25-04-2017 IPR011659 WD40-like Beta Propeller A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 Gene3D G3DSA:2.120.10.30 248 414 1.4E-30 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 Gene3D G3DSA:2.120.10.30 17 153 1.4E-30 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 SUPERFAMILY SSF82171 294 421 1.84E-19 T 25-04-2017 A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 SUPERFAMILY SSF82171 22 167 1.84E-19 T 25-04-2017 A4U88_RS00040 de34b2f944f232a77fcda15904ebc3af 426 SUPERFAMILY SSF82171 243 258 1.84E-19 T 25-04-2017 A4U88_RS21565 45eacc4442763d4d8376a26b2c5fd9d3 91 Pfam PF12773 Double zinc ribbon 41 87 6.3E-11 T 25-04-2017 IPR025874 Double zinc ribbon A4U88_RS02700 385f59a27a0d0144c2fe67b25cbd6010 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 5.1E-141 T 25-04-2017 IPR012690 2-oxo-hepta-3-ene-1,7-dioic acid hydratase GO:0019439 A4U88_RS02700 385f59a27a0d0144c2fe67b25cbd6010 267 Gene3D G3DSA:3.90.850.10 1 267 3.3E-87 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02700 385f59a27a0d0144c2fe67b25cbd6010 267 SUPERFAMILY SSF56529 2 267 2.59E-78 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS02700 385f59a27a0d0144c2fe67b25cbd6010 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 91 265 6.5E-6 T 25-04-2017 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 A4U88_RS14740 2af9c29e7168f8ac765d999de27f07b9 628 PIRSF PIRSF028304 1 628 4.6E-184 T 25-04-2017 IPR010272 Type VI secretion system, TssF-like A4U88_RS14740 2af9c29e7168f8ac765d999de27f07b9 628 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 6 627 2.6E-226 T 25-04-2017 IPR010272 Type VI secretion system, TssF-like A4U88_RS14740 2af9c29e7168f8ac765d999de27f07b9 628 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 628 3.0E-192 T 25-04-2017 IPR010272 Type VI secretion system, TssF-like A4U88_RS18445 6982c654b8a00186e10a4802e6110310 128 Pfam PF01592 NifU-like N terminal domain 2 126 1.2E-56 T 25-04-2017 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 A4U88_RS18445 6982c654b8a00186e10a4802e6110310 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 4.6E-70 T 25-04-2017 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 A4U88_RS18445 6982c654b8a00186e10a4802e6110310 128 Gene3D G3DSA:3.90.1010.10 2 126 2.9E-56 T 25-04-2017 A4U88_RS18445 6982c654b8a00186e10a4802e6110310 128 SUPERFAMILY SSF82649 1 125 2.88E-48 T 25-04-2017 A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 154 170 - T 25-04-2017 IPR018201 Beta-ketoacyl synthase, active site A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 246 5.5E-40 T 25-04-2017 IPR014030 Beta-ketoacyl synthase, N-terminal A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 SMART SM00825 Beta-ketoacyl synthase 4 406 1.1E-12 T 25-04-2017 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 Gene3D G3DSA:3.40.47.10 6 259 1.7E-55 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 254 361 3.8E-31 T 25-04-2017 IPR014031 Beta-ketoacyl synthase, C-terminal A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 Gene3D G3DSA:3.40.47.10 263 404 9.7E-51 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 SUPERFAMILY SSF53901 215 403 1.77E-62 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS17160 3ba00e79787e194e2aae505988636a70 406 SUPERFAMILY SSF53901 1 253 7.78E-64 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS18785 244975594aa747cf3f376d06e41f41dc 136 Pfam PF11162 Protein of unknown function (DUF2946) 11 128 1.3E-14 T 25-04-2017 IPR021333 Protein of unknown function DUF2946 A4U88_RS10070 5b970c2b23bd455fe602e8964e289553 253 Pfam PF07722 Peptidase C26 8 224 1.5E-65 T 25-04-2017 IPR011697 Peptidase C26 GO:0006541|GO:0016787 A4U88_RS10070 5b970c2b23bd455fe602e8964e289553 253 Gene3D G3DSA:3.40.50.880 6 251 7.7E-50 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS10070 5b970c2b23bd455fe602e8964e289553 253 SUPERFAMILY SSF52317 6 248 2.29E-40 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS12775 c5c40d2d73670145443eccc84b7140e2 394 Pfam PF02627 Carboxymuconolactone decarboxylase family 265 309 3.9E-5 T 25-04-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 A4U88_RS12775 c5c40d2d73670145443eccc84b7140e2 394 SUPERFAMILY SSF69118 60 184 2.36E-11 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS12775 c5c40d2d73670145443eccc84b7140e2 394 SUPERFAMILY SSF69118 215 385 6.31E-26 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS12775 c5c40d2d73670145443eccc84b7140e2 394 Gene3D G3DSA:1.20.1290.10 274 386 2.4E-23 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS12775 c5c40d2d73670145443eccc84b7140e2 394 Gene3D G3DSA:1.20.1290.10 82 188 1.0E-12 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS18600 6c38df2a3f0a5f3f54ef2d015f9ce1fd 297 Gene3D G3DSA:3.40.50.10490 4 248 1.2E-91 T 25-04-2017 A4U88_RS18600 6c38df2a3f0a5f3f54ef2d015f9ce1fd 297 Pfam PF13580 SIS domain 39 165 3.3E-9 T 25-04-2017 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 A4U88_RS18600 6c38df2a3f0a5f3f54ef2d015f9ce1fd 297 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.836 T 25-04-2017 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 A4U88_RS18600 6c38df2a3f0a5f3f54ef2d015f9ce1fd 297 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 1.2E-127 T 25-04-2017 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 A4U88_RS18600 6c38df2a3f0a5f3f54ef2d015f9ce1fd 297 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 25-04-2017 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 A4U88_RS18600 6c38df2a3f0a5f3f54ef2d015f9ce1fd 297 SUPERFAMILY SSF53697 4 248 1.82E-75 T 25-04-2017 A4U88_RS22045 44e787617960496b38cefeeee173af6e 269 Gene3D G3DSA:3.40.720.10 2 228 1.2E-34 T 25-04-2017 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 A4U88_RS22045 44e787617960496b38cefeeee173af6e 269 SUPERFAMILY SSF53649 2 251 6.87E-45 T 25-04-2017 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 A4U88_RS22045 44e787617960496b38cefeeee173af6e 269 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 3 208 3.8E-13 T 25-04-2017 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 A4U88_RS22990 5d138fce7df59732d7a937145871075a 828 Pfam PF13954 PapC N-terminal domain 29 174 2.8E-38 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS22990 5d138fce7df59732d7a937145871075a 828 SUPERFAMILY SSF141729 28 148 1.7E-30 T 25-04-2017 A4U88_RS22990 5d138fce7df59732d7a937145871075a 828 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 305 315 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS22990 5d138fce7df59732d7a937145871075a 828 Pfam PF13953 PapC C-terminal domain 752 809 4.4E-16 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS22990 5d138fce7df59732d7a937145871075a 828 Pfam PF00577 Outer membrane usher protein 192 743 2.0E-174 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS02130 96b2dc791bd679938e5f9d5ec7d8ebc2 147 Pfam PF06754 Phosphonate metabolism protein PhnG 6 146 1.3E-56 T 25-04-2017 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 A4U88_RS02130 96b2dc791bd679938e5f9d5ec7d8ebc2 147 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 147 3.0E-55 T 25-04-2017 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399 A4U88_RS02015 01df6b7db8844eb9370f5967289c3426 323 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 285 1.1E-14 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS02015 01df6b7db8844eb9370f5967289c3426 323 SUPERFAMILY SSF111369 38 94 3.01E-7 T 25-04-2017 A4U88_RS02015 01df6b7db8844eb9370f5967289c3426 323 SUPERFAMILY SSF111369 174 253 5.89E-7 T 25-04-2017 A4U88_RS02015 01df6b7db8844eb9370f5967289c3426 323 Gene3D G3DSA:2.40.50.100 40 72 6.1E-14 T 25-04-2017 A4U88_RS02015 01df6b7db8844eb9370f5967289c3426 323 Gene3D G3DSA:2.40.50.100 199 231 6.1E-14 T 25-04-2017 A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 Pfam PF01047 MarR family 45 103 5.8E-16 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 SUPERFAMILY SSF46785 9 149 7.8E-35 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 SMART SM00347 38 141 3.5E-21 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 Gene3D G3DSA:1.10.10.10 6 152 5.1E-45 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 79 94 1.9E-5 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 98 114 1.9E-5 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS00380 5f5cbde7224a6af6ee5b54b7ff522f89 154 PRINTS PR00598 Bacterial regulatory protein MarR family signature 62 78 1.9E-5 T 25-04-2017 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 A4U88_RS06445 6e9596c994b643c318782234d71b8b24 488 ProSitePatterns PS00218 Amino acid permeases signature. 59 89 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS06445 6e9596c994b643c318782234d71b8b24 488 Pfam PF00324 Amino acid permease 35 468 7.5E-125 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS06445 6e9596c994b643c318782234d71b8b24 488 PIRSF PIRSF006060 22 487 2.3E-65 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS00890 686b18f737891beb192878e11642e8da 395 Gene3D G3DSA:3.40.640.10 58 278 1.2E-77 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS00890 686b18f737891beb192878e11642e8da 395 Pfam PF00155 Aminotransferase class I and II 52 391 5.8E-36 T 25-04-2017 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 A4U88_RS00890 686b18f737891beb192878e11642e8da 395 SUPERFAMILY SSF53383 5 394 5.01E-99 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS00890 686b18f737891beb192878e11642e8da 395 Gene3D G3DSA:3.90.1150.10 279 393 3.1E-10 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS07120 14e942cdd0442c1b545f3d162d79a791 209 PIRSF PIRSF006324 1 208 2.7E-50 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS07120 14e942cdd0442c1b545f3d162d79a791 209 Pfam PF01810 LysE type translocator 16 206 1.7E-31 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS08725 382fd319b01ca9ae3a58f7e0ed23f357 205 Pfam PF01810 LysE type translocator 14 202 6.5E-33 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS08725 382fd319b01ca9ae3a58f7e0ed23f357 205 PIRSF PIRSF006324 1 203 2.1E-47 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS06990 c32fff48d79cefcf06fd65eb1a3d19f1 309 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 28 303 1.9E-56 T 25-04-2017 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 A4U88_RS06990 c32fff48d79cefcf06fd65eb1a3d19f1 309 Gene3D G3DSA:3.40.190.10 257 308 3.6E-55 T 25-04-2017 A4U88_RS06990 c32fff48d79cefcf06fd65eb1a3d19f1 309 Gene3D G3DSA:3.40.190.10 26 136 3.6E-55 T 25-04-2017 A4U88_RS06990 c32fff48d79cefcf06fd65eb1a3d19f1 309 SUPERFAMILY SSF53850 28 307 3.26E-59 T 25-04-2017 A4U88_RS06990 c32fff48d79cefcf06fd65eb1a3d19f1 309 Gene3D G3DSA:3.40.190.120 137 244 6.9E-28 T 25-04-2017 A4U88_RS12600 83767e7b94aab6c6154dfca3cd827d1f 870 Pfam PF11739 Dicarboxylate transport 658 859 1.2E-66 T 25-04-2017 IPR021730 Dicarboxylate transport A4U88_RS20565 96545731abeb3880dafff4a258be79f5 340 Gene3D G3DSA:3.40.50.300 116 329 1.3E-63 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20565 96545731abeb3880dafff4a258be79f5 340 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 194 208 - T 25-04-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 A4U88_RS20565 96545731abeb3880dafff4a258be79f5 340 Pfam PF00437 Type II/IV secretion system protein 12 272 6.8E-43 T 25-04-2017 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 A4U88_RS20565 96545731abeb3880dafff4a258be79f5 340 SMART SM00382 123 248 0.0084 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS20565 96545731abeb3880dafff4a258be79f5 340 SUPERFAMILY SSF52540 3 330 3.22E-61 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS20565 96545731abeb3880dafff4a258be79f5 340 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 331 1.2E-133 T 25-04-2017 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 A4U88_RS20130 d1b9b8f845ce2119d345cf29c26946d1 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 1.4E-58 T 25-04-2017 IPR018636 Protein of unknown function DUF2058 A4U88_RS19295 eec8acca6e4bf95ee9c5e6a80b378fd0 129 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 31.948 T 25-04-2017 IPR020911 Uncharacterised protein family UPF0325 A4U88_RS19295 eec8acca6e4bf95ee9c5e6a80b378fd0 129 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 1.0E-62 T 25-04-2017 IPR020911 Uncharacterised protein family UPF0325 A4U88_RS19295 eec8acca6e4bf95ee9c5e6a80b378fd0 129 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 1.5E-56 T 25-04-2017 IPR020911 Uncharacterised protein family UPF0325 A4U88_RS07450 c9a436e11ee3ce65c62fd4db445c44aa 85 Hamap MF_00827 UPF0386 protein YjhX [yjhX]. 1 85 29.762 T 25-04-2017 IPR018654 Putative toxin of bacterial toxin-antitoxin pair A4U88_RS07450 c9a436e11ee3ce65c62fd4db445c44aa 85 Pfam PF09857 Putative toxin of bacterial toxin-antitoxin pair 1 85 1.6E-40 T 25-04-2017 IPR018654 Putative toxin of bacterial toxin-antitoxin pair A4U88_RS15565 f3bfadb491896a74f3f490c1dd3e739a 508 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 76 500 6.4E-181 T 25-04-2017 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath A4U88_RS15565 f3bfadb491896a74f3f490c1dd3e739a 508 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 26 500 4.0E-209 T 25-04-2017 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 Hamap MF_00142 Protein CyaY [cyaY]. 1 105 29.834 T 25-04-2017 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 Gene3D G3DSA:3.30.920.10 1 105 6.7E-36 T 25-04-2017 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 SUPERFAMILY SSF55387 1 105 3.49E-39 T 25-04-2017 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 25-04-2017 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 5.4E-43 T 25-04-2017 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 Pfam PF01491 Frataxin-like domain 1 102 1.6E-29 T 25-04-2017 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS00655 d4d9d263603dd24e5d6a4e3193600f8e 106 SMART SM01219 1 106 1.5E-57 T 25-04-2017 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 A4U88_RS12660 939e0343a50abec7ab15bf0ec9bbaca7 544 Gene3D G3DSA:3.40.190.10 161 311 3.8E-52 T 25-04-2017 A4U88_RS12660 939e0343a50abec7ab15bf0ec9bbaca7 544 Gene3D G3DSA:3.10.105.10 312 512 1.4E-65 T 25-04-2017 A4U88_RS12660 939e0343a50abec7ab15bf0ec9bbaca7 544 SUPERFAMILY SSF53850 36 537 4.42E-145 T 25-04-2017 A4U88_RS12660 939e0343a50abec7ab15bf0ec9bbaca7 544 PIRSF PIRSF002741 2 543 3.4E-119 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS12660 939e0343a50abec7ab15bf0ec9bbaca7 544 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 460 7.7E-89 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS13040 af0573e5c85a76c6b269618985120104 104 Pfam PF04972 BON domain 37 103 3.2E-20 T 25-04-2017 IPR007055 BON domain A4U88_RS13040 af0573e5c85a76c6b269618985120104 104 SMART SM00749 42 104 6.2E-7 T 25-04-2017 IPR014004 Transport-associated and nodulation domain, bacteria A4U88_RS07025 487e73cb2d4f69ac2923e540fc1a0629 307 Pfam PF00892 EamA-like transporter family 16 144 9.3E-21 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS07025 487e73cb2d4f69ac2923e540fc1a0629 307 Pfam PF00892 EamA-like transporter family 153 287 7.1E-18 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS07025 487e73cb2d4f69ac2923e540fc1a0629 307 SUPERFAMILY SSF103481 189 290 7.72E-13 T 25-04-2017 A4U88_RS07025 487e73cb2d4f69ac2923e540fc1a0629 307 SUPERFAMILY SSF103481 45 146 5.1E-12 T 25-04-2017 A4U88_RS20125 91fb7610562e5b9b2df02fbaf4665e3e 232 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 25-04-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS20125 91fb7610562e5b9b2df02fbaf4665e3e 232 SUPERFAMILY SSF55120 17 231 4.32E-55 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS20125 91fb7610562e5b9b2df02fbaf4665e3e 232 Pfam PF00849 RNA pseudouridylate synthase 25 179 2.8E-24 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS02020 d38b96dc811698c87fe788c03f368cd0 384 Pfam PF12698 ABC-2 family transporter protein 33 368 8.0E-24 T 25-04-2017 A4U88_RS04845 eb755ab1dac4e27f6cc87e989d93e776 324 Gene3D G3DSA:3.20.20.100 9 321 2.6E-107 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS04845 eb755ab1dac4e27f6cc87e989d93e776 324 SUPERFAMILY SSF51430 1 320 2.23E-105 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS04845 eb755ab1dac4e27f6cc87e989d93e776 324 Pfam PF00248 Aldo/keto reductase family 15 313 4.4E-80 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS02405 5a61a5f383fabb189a6017665812e924 726 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 487 614 7.3E-34 T 25-04-2017 IPR025299 CstA, C-terminal domain A4U88_RS02405 5a61a5f383fabb189a6017665812e924 726 Pfam PF02554 Carbon starvation protein CstA 34 405 6.3E-161 T 25-04-2017 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 SUPERFAMILY SSF51735 1 149 1.85E-19 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 Gene3D G3DSA:3.30.360.10 120 233 2.9E-34 T 25-04-2017 A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 Gene3D G3DSA:3.40.50.720 1 109 2.0E-9 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 Hamap MF_01265 Probable L-aspartate dehydrogenase [nadX]. 1 263 32.409 T 25-04-2017 IPR020626 L-aspartate dehydrogenase, prokaryotic GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 SUPERFAMILY SSF55347 120 233 6.54E-29 T 25-04-2017 A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 Pfam PF01958 Domain of unknown function DUF108 164 251 9.4E-32 T 25-04-2017 IPR002811 Aspartate dehydrogenase GO:0006742|GO:0016491|GO:0019363|GO:0055114 KEGG: 00760+1.4.1.21 A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 PIRSF PIRSF005227 1 263 1.2E-72 T 25-04-2017 IPR011182 L-aspartate dehydrogenase GO:0009435|GO:0033735|GO:0055114 KEGG: 00760+1.4.1.21 A4U88_RS20235 ac06daceaf1f8333a8b565110b23589d 264 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 8 115 1.3E-11 T 25-04-2017 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 A4U88_RS10515 874147777c8b98d992a806a6a7e9940d 138 Pfam PF10697 Protein of unknown function (DUF2502) 23 111 4.7E-28 T 25-04-2017 IPR019638 Protein of unknown function DUF2502 A4U88_RS06885 a948adb7b9240f83df403cef59d907a0 115 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 19 106 1.7E-18 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS06885 a948adb7b9240f83df403cef59d907a0 115 PIRSF PIRSF029218 15 113 1.6E-25 T 25-04-2017 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 A4U88_RS04140 28cd9f51a3f4adba9e7f3b3efef2eb4b 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 6.4E-106 T 25-04-2017 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 A4U88_RS04140 28cd9f51a3f4adba9e7f3b3efef2eb4b 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 1.4E-59 T 25-04-2017 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 A4U88_RS04140 28cd9f51a3f4adba9e7f3b3efef2eb4b 198 PIRSF PIRSF006102 1 198 4.7E-65 T 25-04-2017 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 A4U88_RS04140 28cd9f51a3f4adba9e7f3b3efef2eb4b 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 30.024 T 25-04-2017 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 A4U88_RS07340 c1b0fb056597e0907ced51c7379176d0 91 TIGRFAM TIGR02953 penta_MxKDx: pentapeptide MXKDX repeat protein 38 89 1.5E-14 T 25-04-2017 IPR014299 Pentapeptide MXKDX repeat protein A4U88_RS02785 4b93a8ecd225cfa8b826534ac5894913 398 SUPERFAMILY SSF103473 17 390 7.59E-26 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS02785 4b93a8ecd225cfa8b826534ac5894913 398 Gene3D G3DSA:1.20.1250.20 213 383 1.9E-12 T 25-04-2017 A4U88_RS02785 4b93a8ecd225cfa8b826534ac5894913 398 Gene3D G3DSA:1.20.1250.20 20 194 1.9E-8 T 25-04-2017 A4U88_RS02785 4b93a8ecd225cfa8b826534ac5894913 398 Pfam PF07690 Major Facilitator Superfamily 219 384 6.7E-10 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 Gene3D G3DSA:3.40.50.2300 37 145 7.8E-10 T 25-04-2017 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 SUPERFAMILY SSF52172 46 153 3.7E-8 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 Pfam PF00196 Bacterial regulatory proteins, luxR family 164 216 2.4E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 Pfam PF00072 Response regulator receiver domain 47 135 3.1E-5 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 SMART SM00421 162 219 2.9E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 ProSitePatterns PS00622 LuxR-type HTH domain signature. 179 206 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 Gene3D G3DSA:1.10.10.10 146 217 4.9E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 195 2.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 207 2.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 179 2.1E-5 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS19615 fd6e11482d5d1795afc21e59fe65ba19 231 SUPERFAMILY SSF46894 152 217 7.82E-13 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 SUPERFAMILY SSF46689 17 56 3.85E-5 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 Gene3D G3DSA:1.10.10.60 5 59 6.5E-14 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 Gene3D G3DSA:1.10.10.60 62 115 1.3E-16 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 Pfam PF12833 Helix-turn-helix domain 28 106 4.8E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 Gene3D G3DSA:3.20.80.10 221 278 2.7E-5 T 25-04-2017 IPR011256 Regulatory factor, effector binding domain A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 SMART SM00342 22 105 3.0E-22 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS15775 6c03d0d1a1ce97b6af11d4a490812f31 295 SUPERFAMILY SSF46689 59 109 2.54E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS16700 94116e4f2b8fb10f1e2e9b9cbbdeb948 50 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 9 46 4.0E-6 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS16700 94116e4f2b8fb10f1e2e9b9cbbdeb948 50 Pfam PF01848 Hok/gef family 5 46 9.5E-20 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS16700 94116e4f2b8fb10f1e2e9b9cbbdeb948 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 5 23 6.0E-8 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS16700 94116e4f2b8fb10f1e2e9b9cbbdeb948 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 25 47 6.0E-8 T 25-04-2017 IPR000021 Hok/gef cell toxic protein GO:0016020 A4U88_RS14795 67dfe2b4d942b255730cb3eacb73ca4c 138 Gene3D G3DSA:3.40.1650.10 2 133 4.5E-23 T 25-04-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 A4U88_RS14795 67dfe2b4d942b255730cb3eacb73ca4c 138 Pfam PF05025 RbsD / FucU transport protein family 1 134 2.1E-23 T 25-04-2017 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 A4U88_RS14795 67dfe2b4d942b255730cb3eacb73ca4c 138 SUPERFAMILY SSF102546 1 133 6.41E-24 T 25-04-2017 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 A4U88_RS13060 4ea4ffe2d3b6dcf2cd64ae404b5e9e5a 567 SUPERFAMILY SSF52091 444 537 3.14E-9 T 25-04-2017 IPR002645 STAS domain A4U88_RS13060 4ea4ffe2d3b6dcf2cd64ae404b5e9e5a 567 Gene3D G3DSA:3.30.750.24 446 549 1.8E-9 T 25-04-2017 IPR002645 STAS domain A4U88_RS13060 4ea4ffe2d3b6dcf2cd64ae404b5e9e5a 567 Pfam PF01740 STAS domain 445 531 2.2E-11 T 25-04-2017 IPR002645 STAS domain A4U88_RS13060 4ea4ffe2d3b6dcf2cd64ae404b5e9e5a 567 Pfam PF00916 Sulfate permease family 24 380 9.3E-80 T 25-04-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 137 191 4.0E-20 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 SMART SM00421 136 193 2.0E-22 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 SUPERFAMILY SSF52172 2 129 2.13E-24 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 SMART SM00448 3 113 1.6E-21 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 1.8E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 1.8E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 1.8E-12 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 SUPERFAMILY SSF46894 123 195 4.42E-20 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 153 180 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 Pfam PF00072 Response regulator receiver domain 6 114 6.0E-22 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 Gene3D G3DSA:3.40.50.2300 2 142 2.4E-27 T 25-04-2017 A4U88_RS00395 f98bdaa19b27d0b2fafeb1c0ef046aae 196 Gene3D G3DSA:1.10.10.10 143 194 4.0E-22 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13810 feb79c9fc3ebdcfda317a2d163bf5f43 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 25.62 T 25-04-2017 IPR022929 Putative manganese efflux pump MntP A4U88_RS13810 feb79c9fc3ebdcfda317a2d163bf5f43 189 Pfam PF02659 Putative manganese efflux pump 31 181 3.4E-55 T 25-04-2017 IPR003810 Putative manganese efflux pump A4U88_RS01445 9cb90a08401058d519ede5b1557b2a28 171 Pfam PF00419 Fimbrial protein 39 171 2.0E-20 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01445 9cb90a08401058d519ede5b1557b2a28 171 Gene3D G3DSA:2.60.40.1090 35 171 3.9E-8 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01445 9cb90a08401058d519ede5b1557b2a28 171 SUPERFAMILY SSF49401 46 171 5.97E-22 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS02660 df7db83a193197535df60fd246db4fb3 265 Pfam PF10703 Molybdenum cofactor biosynthesis protein F 5 260 1.0E-101 T 25-04-2017 IPR024724 Molybdenum cofactor biosynthesis protein F A4U88_RS11235 7d25ae9d348ef43369e1a023f52e2487 317 Pfam PF16220 Domain of unknown function (DUF4880) 16 56 8.2E-10 T 25-04-2017 IPR032623 FecR, N-terminal A4U88_RS11235 7d25ae9d348ef43369e1a023f52e2487 317 PIRSF PIRSF018266 4 317 1.1E-84 T 25-04-2017 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component A4U88_RS11235 7d25ae9d348ef43369e1a023f52e2487 317 Pfam PF04773 FecR protein 113 204 5.8E-16 T 25-04-2017 IPR006860 FecR protein A4U88_RS19925 d90d18fef95eec075df191042ce3dfc6 344 Pfam PF02653 Branched-chain amino acid transport system / permease component 44 316 2.6E-27 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 277 57.668 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 SUPERFAMILY SSF102886 6 302 1.57E-139 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 Pfam PF01218 Coproporphyrinogen III oxidase 9 302 6.2E-133 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 25-04-2017 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 Gene3D G3DSA:3.40.1500.10 7 302 4.8E-136 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PIRSF PIRSF000166 3 303 7.3E-129 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 125 147 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 90 114 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 48 69 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 262 288 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 31 47 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 162 191 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS17690 32bd0dc364541a3b7ed21b4436507705 306 PRINTS PR00073 Coprogen oxidase signature 234 261 1.0E-85 T 25-04-2017 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 A4U88_RS09735 404a51209a14c79834343755debe14ce 562 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 25-04-2017 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 A4U88_RS09735 404a51209a14c79834343755debe14ce 562 SUPERFAMILY SSF52091 455 559 3.92E-13 T 25-04-2017 IPR002645 STAS domain A4U88_RS09735 404a51209a14c79834343755debe14ce 562 TIGRFAM TIGR00815 sulP: sulfate permease 18 556 4.3E-134 T 25-04-2017 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 A4U88_RS09735 404a51209a14c79834343755debe14ce 562 Pfam PF01740 STAS domain 457 556 9.4E-9 T 25-04-2017 IPR002645 STAS domain A4U88_RS09735 404a51209a14c79834343755debe14ce 562 Gene3D G3DSA:3.30.750.24 454 559 3.0E-11 T 25-04-2017 IPR002645 STAS domain A4U88_RS09735 404a51209a14c79834343755debe14ce 562 Pfam PF00916 Sulfate permease family 29 414 8.9E-79 T 25-04-2017 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 A4U88_RS02610 f41b8ca6484bae363a0f5f0390fb777a 121 Gene3D G3DSA:2.60.120.10 24 117 3.7E-22 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS02610 f41b8ca6484bae363a0f5f0390fb777a 121 SUPERFAMILY SSF51182 26 116 6.74E-16 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS02610 f41b8ca6484bae363a0f5f0390fb777a 121 Pfam PF05899 Protein of unknown function (DUF861) 42 115 3.5E-15 T 25-04-2017 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 A4U88_RS10240 56e973a00f2af5b20b1f1d8d4c0f5332 310 Gene3D G3DSA:2.60.40.1090 191 310 4.5E-4 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS10240 56e973a00f2af5b20b1f1d8d4c0f5332 310 Pfam PF05229 Spore Coat Protein U domain 179 305 1.0E-26 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS10240 56e973a00f2af5b20b1f1d8d4c0f5332 310 Pfam PF05229 Spore Coat Protein U domain 21 153 1.0E-15 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS10240 56e973a00f2af5b20b1f1d8d4c0f5332 310 SMART SM00972 92 155 5.1E-11 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS10240 56e973a00f2af5b20b1f1d8d4c0f5332 310 SMART SM00972 252 307 6.2E-11 T 25-04-2017 IPR007893 Spore coat protein U A4U88_RS14875 b5c8e46fe1d7aae942244579e197043f 165 Pfam PF00866 Ring hydroxylating beta subunit 16 157 5.4E-42 T 25-04-2017 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 A4U88_RS14875 b5c8e46fe1d7aae942244579e197043f 165 Gene3D G3DSA:3.10.450.50 5 158 2.5E-52 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS14875 b5c8e46fe1d7aae942244579e197043f 165 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 10 165 6.3E-71 T 25-04-2017 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0016708|GO:0055114 A4U88_RS14875 b5c8e46fe1d7aae942244579e197043f 165 SUPERFAMILY SSF54427 6 165 1.12E-51 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS19230 8305304e5d90fc3f1ca9f2f836740080 176 Gene3D G3DSA:3.30.910.20 23 71 1.7E-40 T 25-04-2017 A4U88_RS19230 8305304e5d90fc3f1ca9f2f836740080 176 Gene3D G3DSA:3.30.910.20 109 176 1.7E-40 T 25-04-2017 A4U88_RS19230 8305304e5d90fc3f1ca9f2f836740080 176 SUPERFAMILY SSF111384 33 175 1.23E-39 T 25-04-2017 IPR024930 Skp domain A4U88_RS19230 8305304e5d90fc3f1ca9f2f836740080 176 SMART SM00935 23 176 2.1E-56 T 25-04-2017 IPR005632 Chaperone protein Skp GO:0051082 A4U88_RS19230 8305304e5d90fc3f1ca9f2f836740080 176 PIRSF PIRSF002094 9 176 1.6E-62 T 25-04-2017 IPR005632 Chaperone protein Skp GO:0051082 A4U88_RS19230 8305304e5d90fc3f1ca9f2f836740080 176 Pfam PF03938 Outer membrane protein (OmpH-like) 22 174 2.7E-37 T 25-04-2017 IPR005632 Chaperone protein Skp GO:0051082 A4U88_RS15095 864638fd90ba331e23bd6120027b0b31 145 Pfam PF03245 Bacteriophage Rz lysis protein 28 142 1.8E-31 T 25-04-2017 IPR004929 Bacteriophage Rz lysis protein GO:0019076|GO:0019835 A4U88_RS15095 864638fd90ba331e23bd6120027b0b31 145 Pfam PF05781 MRVI1 protein 46 126 1.1E-4 T 25-04-2017 IPR008677 MRVI1 A4U88_RS23730 5cd3d7a211044eb6634616ea4209d9e1 413 Pfam PF04932 O-Antigen ligase 189 346 9.4E-10 T 25-04-2017 IPR007016 O-antigen ligase-related A4U88_RS03635 e78ed6b669cd80f566e4011f8ecfad5b 239 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 48 232 9.8E-23 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03635 e78ed6b669cd80f566e4011f8ecfad5b 239 SUPERFAMILY SSF161098 2 218 1.03E-40 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03635 e78ed6b669cd80f566e4011f8ecfad5b 239 Gene3D G3DSA:1.10.3720.10 2 232 1.3E-49 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 SUPERFAMILY SSF161098 285 528 7.98E-32 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 264 8.2E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 376 524 2.5E-8 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 Gene3D G3DSA:1.10.3720.10 17 267 1.2E-40 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 Gene3D G3DSA:1.10.3720.10 293 531 2.9E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 SUPERFAMILY SSF161098 10 264 9.55E-47 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03240 2977c62ef3f51cce7a46cd197ccd653e 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 2.1E-246 T 25-04-2017 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 A4U88_RS19725 42406baf799835b91af25882bda523a3 143 SUPERFAMILY SSF54593 34 141 1.34E-13 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS19725 42406baf799835b91af25882bda523a3 143 Gene3D G3DSA:3.10.180.10 35 136 7.9E-11 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11420 a22dce185be8b29d87e43ef1abff0e67 173 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 18 32 - T 25-04-2017 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 A4U88_RS11420 a22dce185be8b29d87e43ef1abff0e67 173 Pfam PF02417 Chromate transporter 7 169 3.5E-33 T 25-04-2017 IPR003370 Chromate transporter GO:0015109|GO:0015703 A4U88_RS07895 737405e88f79ab1a0b03ec8448d15d79 206 Gene3D G3DSA:3.40.30.10 2 87 6.7E-25 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS07895 737405e88f79ab1a0b03ec8448d15d79 206 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 79 4.3E-15 T 25-04-2017 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 A4U88_RS07895 737405e88f79ab1a0b03ec8448d15d79 206 SUPERFAMILY SSF47616 72 199 5.29E-30 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS07895 737405e88f79ab1a0b03ec8448d15d79 206 Pfam PF13410 Glutathione S-transferase, C-terminal domain 128 189 4.4E-6 T 25-04-2017 A4U88_RS07895 737405e88f79ab1a0b03ec8448d15d79 206 SUPERFAMILY SSF52833 1 85 3.19E-23 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS07895 737405e88f79ab1a0b03ec8448d15d79 206 Gene3D G3DSA:1.20.1050.10 88 202 4.4E-31 T 25-04-2017 IPR010987 Glutathione S-transferase, C-terminal-like A4U88_RS20210 89415fc6089b4ca2321bf126a7855999 440 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 416 7.7E-144 T 25-04-2017 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 A4U88_RS20210 89415fc6089b4ca2321bf126a7855999 440 Pfam PF05525 Branched-chain amino acid transport protein 8 429 1.2E-143 T 25-04-2017 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 A4U88_RS19005 4cef4b532bfc1f5f8b2832e5651b5e37 399 Pfam PF07690 Major Facilitator Superfamily 18 275 1.8E-27 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS19005 4cef4b532bfc1f5f8b2832e5651b5e37 399 SUPERFAMILY SSF103473 10 389 5.49E-54 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS19005 4cef4b532bfc1f5f8b2832e5651b5e37 399 Gene3D G3DSA:1.20.1250.20 14 195 1.7E-25 T 25-04-2017 A4U88_RS19005 4cef4b532bfc1f5f8b2832e5651b5e37 399 Gene3D G3DSA:1.20.1250.20 220 392 3.8E-14 T 25-04-2017 A4U88_RS16160 592cb85f8a7d7f8c3a2d9487b153663a 230 Gene3D G3DSA:3.40.225.10 2 230 8.8E-72 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS16160 592cb85f8a7d7f8c3a2d9487b153663a 230 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 195 1.5E-46 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS16160 592cb85f8a7d7f8c3a2d9487b153663a 230 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 230 2.9E-122 T 25-04-2017 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 A4U88_RS16160 592cb85f8a7d7f8c3a2d9487b153663a 230 SMART SM01007 7 197 8.1E-69 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS16160 592cb85f8a7d7f8c3a2d9487b153663a 230 SUPERFAMILY SSF53639 1 222 5.1E-70 T 25-04-2017 IPR001303 Class II aldolase/adducin N-terminal A4U88_RS21775 5f4d84ef8c40197265fb37df447f8e6a 147 Pfam PF13924 Lipocalin-like domain 7 142 8.8E-42 T 25-04-2017 IPR024311 Lipocalin-like domain A4U88_RS14930 79968428b325b494292dd75df06228c8 232 PRINTS PR01837 MgtC/SapB protein signature 32 50 5.8E-45 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS14930 79968428b325b494292dd75df06228c8 232 PRINTS PR01837 MgtC/SapB protein signature 84 108 5.8E-45 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS14930 79968428b325b494292dd75df06228c8 232 PRINTS PR01837 MgtC/SapB protein signature 57 79 5.8E-45 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS14930 79968428b325b494292dd75df06228c8 232 PRINTS PR01837 MgtC/SapB protein signature 13 32 5.8E-45 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS14930 79968428b325b494292dd75df06228c8 232 Pfam PF02308 MgtC family 10 129 2.2E-37 T 25-04-2017 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 A4U88_RS20025 c565150048f3effca50448a26b529237 109 SUPERFAMILY SSF102829 6 94 9.68E-25 T 25-04-2017 IPR007838 Cell division protein ZapA-like A4U88_RS20025 c565150048f3effca50448a26b529237 109 Pfam PF05164 Cell division protein ZapA 6 90 3.3E-19 T 25-04-2017 IPR007838 Cell division protein ZapA-like A4U88_RS20025 c565150048f3effca50448a26b529237 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 33.802 T 25-04-2017 IPR023771 Cell division protein ZapA, eubacteria A4U88_RS04350 fee90acec76b443c2a857499579823a5 474 SUPERFAMILY SSF50952 220 449 1.31E-42 T 25-04-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 A4U88_RS04350 fee90acec76b443c2a857499579823a5 474 SUPERFAMILY SSF50952 34 189 1.31E-42 T 25-04-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 A4U88_RS04350 fee90acec76b443c2a857499579823a5 474 TIGRFAM TIGR03606 non_repeat_PQQ: dehydrogenase, PQQ-dependent, s-GDH family 32 473 1.2E-229 T 25-04-2017 IPR019893 PQQ-dependent dehydrogenase, s-GDH family KEGG: 00030+1.1.5.2|MetaCyc: PWY-7165 A4U88_RS04350 fee90acec76b443c2a857499579823a5 474 Pfam PF07995 Glucose / Sorbosone dehydrogenase 364 445 1.3E-8 T 25-04-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 A4U88_RS04350 fee90acec76b443c2a857499579823a5 474 Pfam PF07995 Glucose / Sorbosone dehydrogenase 53 332 1.5E-54 T 25-04-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 A4U88_RS04350 fee90acec76b443c2a857499579823a5 474 Gene3D G3DSA:2.120.10.30 15 451 2.6E-94 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 56 5.6E-20 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 Gene3D G3DSA:3.40.190.10 86 171 5.8E-21 T 25-04-2017 A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 SUPERFAMILY SSF53850 84 289 5.31E-37 T 25-04-2017 A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 Gene3D G3DSA:3.40.190.10 172 255 2.3E-18 T 25-04-2017 A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 Gene3D G3DSA:1.10.10.10 2 82 2.9E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 SUPERFAMILY SSF46785 2 105 1.01E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10820 398ee726f112e9ee0b4f7bd109d548ba 303 Pfam PF03466 LysR substrate binding domain 83 286 2.8E-35 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS14050 6edb69167059b3267574d9e3874c11bf 335 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 246 333 1.5E-23 T 25-04-2017 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 A4U88_RS14050 6edb69167059b3267574d9e3874c11bf 335 Gene3D G3DSA:3.40.47.10 13 172 8.6E-41 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14050 6edb69167059b3267574d9e3874c11bf 335 SUPERFAMILY SSF53901 13 333 2.49E-42 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS14050 6edb69167059b3267574d9e3874c11bf 335 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 117 193 5.3E-21 T 25-04-2017 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 A4U88_RS14050 6edb69167059b3267574d9e3874c11bf 335 Gene3D G3DSA:3.40.47.10 173 333 4.0E-35 T 25-04-2017 IPR016039 Thiolase-like GO:0003824|GO:0008152 A4U88_RS02060 5c5e3a6e549c5d559a88c05546f1d32c 438 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 5 432 1.1E-239 T 25-04-2017 IPR027566 Putrescine-ornithine antiporter GO:0015496|GO:0015822|GO:0015847 A4U88_RS02060 5c5e3a6e549c5d559a88c05546f1d32c 438 Pfam PF13520 Amino acid permease 9 415 1.1E-45 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS02060 5c5e3a6e549c5d559a88c05546f1d32c 438 PIRSF PIRSF006060 1 436 2.3E-48 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS02060 5c5e3a6e549c5d559a88c05546f1d32c 438 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 429 2.3E-141 T 25-04-2017 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 A4U88_RS15520 3fd2386fdc4c1c9ab6db6295f901c5c7 204 Pfam PF12059 Protein of unknown function (DUF3540) 50 133 1.4E-7 T 25-04-2017 IPR021927 Protein of unknown function DUF3540 A4U88_RS15520 3fd2386fdc4c1c9ab6db6295f901c5c7 204 Pfam PF12059 Protein of unknown function (DUF3540) 133 204 5.4E-13 T 25-04-2017 IPR021927 Protein of unknown function DUF3540 A4U88_RS04445 b2fe091b58d9ac4e10debdaa2affef3b 499 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 271 278 - T 25-04-2017 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS04445 b2fe091b58d9ac4e10debdaa2affef3b 499 Gene3D G3DSA:3.40.309.10 285 470 4.0E-60 T 25-04-2017 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 A4U88_RS04445 b2fe091b58d9ac4e10debdaa2affef3b 499 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 299 310 - T 25-04-2017 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 A4U88_RS04445 b2fe091b58d9ac4e10debdaa2affef3b 499 Gene3D G3DSA:3.40.605.10 19 284 6.4E-102 T 25-04-2017 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS04445 b2fe091b58d9ac4e10debdaa2affef3b 499 Pfam PF00171 Aldehyde dehydrogenase family 28 495 1.2E-164 T 25-04-2017 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 A4U88_RS04445 b2fe091b58d9ac4e10debdaa2affef3b 499 SUPERFAMILY SSF53720 14 498 8.77E-164 T 25-04-2017 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 A4U88_RS13855 e597c7fc784428322aa38ed327dc408a 100 Pfam PF10765 Protein of unknown function (DUF2591) 29 97 1.8E-13 T 25-04-2017 IPR019701 Bacteriophage P22, NinX A4U88_RS19520 b4d6b3738c8599dd3b0bbab485465ba0 100 SMART SM00530 32 87 1.1E-8 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS19520 b4d6b3738c8599dd3b0bbab485465ba0 100 SUPERFAMILY SSF47413 25 94 6.19E-14 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS19520 b4d6b3738c8599dd3b0bbab485465ba0 100 Gene3D G3DSA:1.10.260.40 23 85 2.2E-12 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS19520 b4d6b3738c8599dd3b0bbab485465ba0 100 Pfam PF13744 Helix-turn-helix domain 18 89 9.7E-12 T 25-04-2017 A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 25-04-2017 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 25-04-2017 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 8.3E-52 T 25-04-2017 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 SUPERFAMILY SSF109635 9 110 3.4E-38 T 25-04-2017 A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 30.429 T 25-04-2017 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 111 143 2.8E-10 T 25-04-2017 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 SUPERFAMILY SSF57716 111 149 4.56E-10 T 25-04-2017 A4U88_RS20370 13eb542ea4416e5f4cac4b35e50471c3 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 25-04-2017 IPR020458 Zinc finger, DksA/TraR C4-type conserved site A4U88_RS21340 c705fc9d042c81aeab3338d69ad29c6a 419 Gene3D G3DSA:3.65.10.10 21 219 3.3E-68 T 25-04-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 A4U88_RS21340 c705fc9d042c81aeab3338d69ad29c6a 419 Gene3D G3DSA:3.65.10.10 220 416 8.5E-64 T 25-04-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 A4U88_RS21340 c705fc9d042c81aeab3338d69ad29c6a 419 SUPERFAMILY SSF55205 1 418 1.03E-147 T 25-04-2017 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 A4U88_RS21340 c705fc9d042c81aeab3338d69ad29c6a 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 406 3.2E-127 T 25-04-2017 IPR001986 Enolpyruvate transferase domain GO:0016765 A4U88_RS21340 c705fc9d042c81aeab3338d69ad29c6a 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 416 47.074 T 25-04-2017 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS21340 c705fc9d042c81aeab3338d69ad29c6a 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 415 4.1E-186 T 25-04-2017 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 A4U88_RS23155 6e6838ff660c09f16c64c7106e57fdcb 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 312 1.3E-43 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 1.0E-53 T 25-04-2017 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 Gene3D G3DSA:3.40.50.720 138 305 1.8E-44 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 25-04-2017 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 SUPERFAMILY SSF52283 2 135 4.16E-44 T 25-04-2017 A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 6 329 3.9E-34 T 25-04-2017 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 SUPERFAMILY SSF51735 102 298 2.61E-55 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 25-04-2017 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 A4U88_RS12605 a00448580ebc676970ec19d365397d46 330 Gene3D G3DSA:3.40.50.720 1 137 2.2E-48 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00670 2218fd2e02017ef818797f1656e2c8bc 237 Pfam PF04340 Protein of unknown function, DUF484 13 234 3.3E-74 T 25-04-2017 IPR007435 Protein of unknown function DUF484 A4U88_RS19755 20d93a2523904300a8916bc5294f59c7 209 SUPERFAMILY SSF52499 4 200 6.8E-53 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS19755 20d93a2523904300a8916bc5294f59c7 209 Pfam PF00857 Isochorismatase family 14 165 2.1E-23 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS19755 20d93a2523904300a8916bc5294f59c7 209 Gene3D G3DSA:3.40.50.850 4 201 1.0E-48 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS00280 0f441c1d522894e332e4e406d0a523c3 462 Gene3D G3DSA:3.20.20.140 125 407 1.3E-91 T 25-04-2017 A4U88_RS00280 0f441c1d522894e332e4e406d0a523c3 462 SUPERFAMILY SSF51338 83 125 1.88E-7 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS00280 0f441c1d522894e332e4e406d0a523c3 462 Pfam PF07969 Amidohydrolase family 165 455 4.1E-10 T 25-04-2017 IPR013108 Amidohydrolase 3 A4U88_RS00280 0f441c1d522894e332e4e406d0a523c3 462 SUPERFAMILY SSF51556 118 425 1.84E-71 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS00280 0f441c1d522894e332e4e406d0a523c3 462 Gene3D G3DSA:2.30.40.10 80 124 2.4E-7 T 25-04-2017 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 A4U88_RS13290 c3baef59baea2bdccd4410b120ba37a5 98 Pfam PF07383 Protein of unknown function (DUF1496) 37 97 6.6E-25 T 25-04-2017 IPR009971 Protein of unknown function DUF1496 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 SUPERFAMILY SSF55831 1 264 1.16E-131 T 25-04-2017 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 25-04-2017 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 Gene3D G3DSA:3.30.572.10 1 264 1.4E-135 T 25-04-2017 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 4.7E-47 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 4.7E-47 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 4.7E-47 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.7E-47 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 4.7E-47 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 Pfam PF00303 Thymidylate synthase 2 264 3.8E-125 T 25-04-2017 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 39.672 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 3.8E-94 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS19455 47d26a27c41b3dce202aa9ac86dda6ad 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 2.2E-41 T 25-04-2017 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 A4U88_RS17675 ade40b31de22f7ee2ffe700954a1d9ae 132 Gene3D G3DSA:2.40.50.200 32 131 2.5E-41 T 25-04-2017 IPR005220 Bacterial OB-fold A4U88_RS17675 ade40b31de22f7ee2ffe700954a1d9ae 132 SUPERFAMILY SSF101756 34 131 8.76E-35 T 25-04-2017 IPR005220 Bacterial OB-fold A4U88_RS17675 ade40b31de22f7ee2ffe700954a1d9ae 132 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 1 130 1.2E-44 T 25-04-2017 IPR016052 Bacteriophage 933W, L0136 A4U88_RS17675 ade40b31de22f7ee2ffe700954a1d9ae 132 Pfam PF04076 Bacterial OB fold (BOF) protein 35 130 2.6E-36 T 25-04-2017 IPR005220 Bacterial OB-fold A4U88_RS11975 bd9456cf1f3d6ffc37cd221357b3b369 119 SUPERFAMILY SSF46785 17 115 1.44E-29 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11975 bd9456cf1f3d6ffc37cd221357b3b369 119 Pfam PF01638 HxlR-like helix-turn-helix 25 114 5.2E-29 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS11975 bd9456cf1f3d6ffc37cd221357b3b369 119 Gene3D G3DSA:1.10.10.10 10 115 3.2E-36 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21610 aaf7f8c7c804d8b8775d3e6da4d4ec78 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 3.5E-42 T 25-04-2017 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 A4U88_RS21610 aaf7f8c7c804d8b8775d3e6da4d4ec78 162 PIRSF PIRSF018472 1 162 5.4E-57 T 25-04-2017 IPR026034 Cell shape-determining protein MreD, proteobacterial type A4U88_RS21610 aaf7f8c7c804d8b8775d3e6da4d4ec78 162 Pfam PF04093 rod shape-determining protein MreD 5 154 8.5E-44 T 25-04-2017 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 SUPERFAMILY SSF56954 4 474 7.06E-92 T 25-04-2017 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Gene3D G3DSA:2.20.200.10 101 144 6.0E-18 T 25-04-2017 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Gene3D G3DSA:2.20.200.10 318 357 6.0E-18 T 25-04-2017 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Gene3D G3DSA:1.20.1600.10 145 317 3.8E-79 T 25-04-2017 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Gene3D G3DSA:1.20.1600.10 52 90 3.8E-79 T 25-04-2017 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Gene3D G3DSA:1.20.1600.10 359 472 3.8E-79 T 25-04-2017 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Pfam PF02321 Outer membrane efflux protein 64 257 8.9E-27 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 Pfam PF02321 Outer membrane efflux protein 290 470 1.6E-17 T 25-04-2017 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 A4U88_RS19025 e5f2bb300ccf01ad47095a61ffda2081 483 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 472 2.7E-103 T 25-04-2017 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 A4U88_RS15230 df7e7fcbefcf7a6e6ff604c36d0dd00f 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 52.242 T 25-04-2017 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 A4U88_RS15230 df7e7fcbefcf7a6e6ff604c36d0dd00f 306 PIRSF PIRSF026649 3 306 5.0E-99 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS15230 df7e7fcbefcf7a6e6ff604c36d0dd00f 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 297 7.9E-100 T 25-04-2017 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 A4U88_RS15230 df7e7fcbefcf7a6e6ff604c36d0dd00f 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 2.4E-141 T 25-04-2017 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 A4U88_RS07255 0e64a53f3a3da6564643a1e2d78b1c4f 176 SUPERFAMILY SSF55729 7 158 4.37E-37 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07255 0e64a53f3a3da6564643a1e2d78b1c4f 176 Gene3D G3DSA:3.40.630.30 2 172 1.8E-44 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07255 0e64a53f3a3da6564643a1e2d78b1c4f 176 Pfam PF13302 Acetyltransferase (GNAT) domain 14 156 3.5E-27 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS01660 343572156b2f8631c4fbead4bb90ea96 102 Gene3D G3DSA:2.30.30.100 1 74 4.3E-38 T 25-04-2017 A4U88_RS01660 343572156b2f8631c4fbead4bb90ea96 102 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.0E-29 T 25-04-2017 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 A4U88_RS01660 343572156b2f8631c4fbead4bb90ea96 102 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.396 T 25-04-2017 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 A4U88_RS01660 343572156b2f8631c4fbead4bb90ea96 102 SUPERFAMILY SSF50182 7 69 4.04E-24 T 25-04-2017 IPR010920 LSM domain A4U88_RS16825 c64cb60264a021b81533293b177f2d5f 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.962 T 25-04-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 A4U88_RS16825 c64cb60264a021b81533293b177f2d5f 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 2.2E-21 T 25-04-2017 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 A4U88_RS09725 9ef0c3fef8206fa9b372fc3c473f6bbc 269 Gene3D G3DSA:1.25.40.10 188 250 1.7E-4 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS09725 9ef0c3fef8206fa9b372fc3c473f6bbc 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 5.7E-42 T 25-04-2017 IPR032698 Protein SirB1, N-terminal A4U88_RS09725 9ef0c3fef8206fa9b372fc3c473f6bbc 269 Pfam PF13371 Tetratricopeptide repeat 187 258 2.4E-23 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00515 03e0112a6c0e812338808567d1ab2d26 93 Pfam PF13616 PPIC-type PPIASE domain 15 90 3.9E-23 T 25-04-2017 A4U88_RS00515 03e0112a6c0e812338808567d1ab2d26 93 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 31 51 - T 25-04-2017 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-936440 A4U88_RS00515 03e0112a6c0e812338808567d1ab2d26 93 SUPERFAMILY SSF54534 5 90 8.5E-28 T 25-04-2017 A4U88_RS00515 03e0112a6c0e812338808567d1ab2d26 93 Gene3D G3DSA:3.10.50.40 7 91 5.6E-32 T 25-04-2017 A4U88_RS16585 cf6be21c228b697b0a6ebd64f9a66ca5 146 SUPERFAMILY SSF53955 1 146 2.61E-49 T 25-04-2017 IPR023346 Lysozyme-like domain A4U88_RS16585 cf6be21c228b697b0a6ebd64f9a66ca5 146 Pfam PF00959 Phage lysozyme 28 138 2.8E-20 T 25-04-2017 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 A4U88_RS16585 cf6be21c228b697b0a6ebd64f9a66ca5 146 Gene3D G3DSA:1.10.530.40 2 146 2.7E-55 T 25-04-2017 IPR023347 Lysozyme domain GO:0003796 A4U88_RS15755 397e918f3e20459ed45ed54aa995ab94 459 Gene3D G3DSA:3.50.50.60 3 205 1.6E-18 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS15755 397e918f3e20459ed45ed54aa995ab94 459 Pfam PF13454 FAD-NAD(P)-binding 9 158 2.0E-31 T 25-04-2017 A4U88_RS15755 397e918f3e20459ed45ed54aa995ab94 459 SUPERFAMILY SSF51905 1 233 2.43E-24 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS15755 397e918f3e20459ed45ed54aa995ab94 459 SUPERFAMILY SSF51905 195 453 4.97E-6 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS15755 397e918f3e20459ed45ed54aa995ab94 459 Gene3D G3DSA:3.50.50.60 206 263 1.4E-6 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS15755 397e918f3e20459ed45ed54aa995ab94 459 Gene3D G3DSA:3.50.50.60 322 429 1.4E-6 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS11045 8f42f28a353a6bf80b6c0aab038bbd03 198 Gene3D G3DSA:3.90.79.10 7 192 6.9E-51 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS11045 8f42f28a353a6bf80b6c0aab038bbd03 198 SUPERFAMILY SSF55811 10 192 1.45E-40 T 25-04-2017 IPR015797 NUDIX hydrolase domain-like GO:0016787 A4U88_RS11045 8f42f28a353a6bf80b6c0aab038bbd03 198 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 9 189 2.5E-45 T 25-04-2017 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 A4U88_RS01460 9c3a28663ddb181797c47231977b9e79 174 Gene3D G3DSA:2.60.40.1090 26 173 1.1E-35 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01460 9c3a28663ddb181797c47231977b9e79 174 Pfam PF00419 Fimbrial protein 27 173 3.1E-9 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01460 9c3a28663ddb181797c47231977b9e79 174 SUPERFAMILY SSF49401 32 174 8.45E-30 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS17350 1fcbab2bad591f088db1dcdbef1c9256 151 Pfam PF05656 Protein of unknown function (DUF805) 13 125 5.8E-8 T 25-04-2017 IPR008523 Protein of unknown function DUF805 GO:0016021 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 SUPERFAMILY SSF51735 123 285 3.64E-53 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 25-04-2017 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.615 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 6.7E-40 T 25-04-2017 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 25-04-2017 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 Gene3D G3DSA:3.40.50.720 140 264 2.2E-52 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 3.6E-89 T 25-04-2017 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 SUPERFAMILY SSF53223 3 122 1.25E-40 T 25-04-2017 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 2.9E-69 T 25-04-2017 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 A4U88_RS05455 22779d5200574885bf002c6b4a31b5ea 288 Gene3D G3DSA:3.40.192.10 7 139 5.9E-52 T 25-04-2017 A4U88_RS13430 34ffc20870b3313b4888762cdc0cea99 216 Gene3D G3DSA:2.40.128.20 30 216 1.2E-83 T 25-04-2017 IPR012674 Calycin A4U88_RS13430 34ffc20870b3313b4888762cdc0cea99 216 SUPERFAMILY SSF50814 31 216 1.9E-75 T 25-04-2017 IPR011038 Calycin-like A4U88_RS13430 34ffc20870b3313b4888762cdc0cea99 216 Pfam PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment 37 216 7.8E-83 T 25-04-2017 IPR015304 ZinT domain GO:0008270 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 Pfam PF13458 Periplasmic binding protein 28 367 1.9E-65 T 25-04-2017 IPR028081 Leucine-binding protein domain A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 69 87 9.3E-27 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 28 44 9.3E-27 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 50 66 9.3E-27 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 282 295 9.3E-27 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 9.3E-27 T 25-04-2017 IPR000709 Leu/Ile/Val-binding protein GO:0006865 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 Gene3D G3DSA:3.40.50.2300 27 227 1.4E-70 T 25-04-2017 A4U88_RS16015 efdd780f0c76fb26acc25885e279176b 372 SUPERFAMILY SSF53822 27 370 2.78E-93 T 25-04-2017 IPR028082 Periplasmic binding protein-like I A4U88_RS15650 03433e7caabe42eb959ec66c3a3f6010 255 Gene3D G3DSA:1.10.3720.10 58 247 1.8E-16 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS15650 03433e7caabe42eb959ec66c3a3f6010 255 SUPERFAMILY SSF161098 54 245 1.09E-26 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS15650 03433e7caabe42eb959ec66c3a3f6010 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 247 4.9E-27 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS02045 6d9646ce479bb6d2ce5be9f26f762292 167 Gene3D G3DSA:3.40.630.30 3 126 4.0E-15 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS02045 6d9646ce479bb6d2ce5be9f26f762292 167 Pfam PF13508 Acetyltransferase (GNAT) domain 45 124 1.0E-6 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS02045 6d9646ce479bb6d2ce5be9f26f762292 167 SUPERFAMILY SSF55729 1 158 6.31E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS00660 a1cf77dfd7b2c688ccf15bcc59812997 68 Pfam PF13627 Prokaryotic lipoprotein-attachment site 8 29 6.3E-9 T 25-04-2017 IPR032831 Prokaryotic lipoprotein-attachment site A4U88_RS22900 361c5f4a6641d7fe858587cd707536a8 294 SUPERFAMILY SSF51658 1 253 1.2E-40 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS22900 361c5f4a6641d7fe858587cd707536a8 294 Gene3D G3DSA:3.20.20.150 1 252 9.1E-38 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS22900 361c5f4a6641d7fe858587cd707536a8 294 Pfam PF01261 Xylose isomerase-like TIM barrel 20 238 4.1E-34 T 25-04-2017 IPR013022 Xylose isomerase-like, TIM barrel domain A4U88_RS10615 a6a4ba567ab2b00093218bd85e95dc08 60 Pfam PF10636 Hemin uptake protein hemP 25 60 4.2E-17 T 25-04-2017 IPR019600 Hemin uptake protein HemP A4U88_RS10615 a6a4ba567ab2b00093218bd85e95dc08 60 Gene3D G3DSA:2.10.70.10 21 60 8.0E-18 T 25-04-2017 A4U88_RS13200 8ae58bdff0010677b063a29c5a3f1e9d 214 Pfam PF01914 MarC family integral membrane protein 10 210 2.4E-73 T 25-04-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 A4U88_RS13200 8ae58bdff0010677b063a29c5a3f1e9d 214 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 8 206 1.2E-78 T 25-04-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 A4U88_RS15140 866df3a709044cd84681f8a3fd04e50e 359 Pfam PF12571 Phage tail-collar fibre protein 4 149 1.5E-44 T 25-04-2017 IPR022225 Phage tail fibre protein A4U88_RS10090 ece408d6c13f4e9fc8d7ebcad5c668e7 297 SUPERFAMILY SSF103481 47 144 2.75E-7 T 25-04-2017 A4U88_RS10090 ece408d6c13f4e9fc8d7ebcad5c668e7 297 SUPERFAMILY SSF103481 196 293 1.83E-8 T 25-04-2017 A4U88_RS10090 ece408d6c13f4e9fc8d7ebcad5c668e7 297 Pfam PF00892 EamA-like transporter family 163 289 4.6E-8 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS10090 ece408d6c13f4e9fc8d7ebcad5c668e7 297 Pfam PF00892 EamA-like transporter family 10 140 1.1E-7 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS00855 63ed32e2ccbd292ce186384830669f6a 405 Pfam PF11340 Protein of unknown function (DUF3142) 87 309 3.5E-103 T 25-04-2017 IPR021488 Protein of unknown function DUF3142 A4U88_RS23735 243787edcc14b71c40d3523abb7ea35e 325 SUPERFAMILY SSF53448 6 237 1.31E-44 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS23735 243787edcc14b71c40d3523abb7ea35e 325 Pfam PF00535 Glycosyl transferase family 2 9 131 1.6E-26 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS23735 243787edcc14b71c40d3523abb7ea35e 325 Gene3D G3DSA:3.90.550.10 6 245 5.0E-40 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS14305 6a100288ff17d990f6efff9ad878f54f 466 Pfam PF07196 Flagellin hook IN motif 129 186 6.1E-11 T 25-04-2017 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 A4U88_RS14305 6a100288ff17d990f6efff9ad878f54f 466 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 226 455 2.3E-62 T 25-04-2017 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 A4U88_RS14305 6a100288ff17d990f6efff9ad878f54f 466 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 105 4.0E-21 T 25-04-2017 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 A4U88_RS05300 000c0d5526d5b3ac1e51b08f4c82b42a 242 Pfam PF06966 Protein of unknown function (DUF1295) 32 234 8.6E-30 T 25-04-2017 IPR010721 Protein of unknown function DUF1295 A4U88_RS12000 1280f5615a99f0dafa93889e8b2fb540 729 Gene3D G3DSA:2.40.170.20 193 729 2.9E-152 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS12000 1280f5615a99f0dafa93889e8b2fb540 729 Pfam PF07715 TonB-dependent Receptor Plug Domain 76 179 1.9E-19 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS12000 1280f5615a99f0dafa93889e8b2fb540 729 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 78 728 3.8E-122 T 25-04-2017 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 A4U88_RS12000 1280f5615a99f0dafa93889e8b2fb540 729 Gene3D G3DSA:2.170.130.10 33 189 1.4E-33 T 25-04-2017 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 A4U88_RS12000 1280f5615a99f0dafa93889e8b2fb540 729 SUPERFAMILY SSF56935 34 729 4.68E-134 T 25-04-2017 A4U88_RS12000 1280f5615a99f0dafa93889e8b2fb540 729 Pfam PF00593 TonB dependent receptor 489 728 3.0E-33 T 25-04-2017 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 A4U88_RS05415 ad49724c7c3f967824e773370907c33f 464 Gene3D G3DSA:3.40.50.1820 77 240 2.5E-5 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS10205 836f08597256d10272cf05eb68ee2bd8 447 PIRSF PIRSF005348 11 447 4.9E-160 T 25-04-2017 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 A4U88_RS10205 836f08597256d10272cf05eb68ee2bd8 447 Pfam PF03390 2-hydroxycarboxylate transporter family 31 440 1.0E-144 T 25-04-2017 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 A4U88_RS18860 108bf7438ead10f090708fc73be7848f 190 SUPERFAMILY SSF160443 90 172 2.09E-10 T 25-04-2017 IPR002625 Smr domain A4U88_RS18860 108bf7438ead10f090708fc73be7848f 190 SMART SM00463 88 172 2.7E-11 T 25-04-2017 IPR002625 Smr domain A4U88_RS18860 108bf7438ead10f090708fc73be7848f 190 Pfam PF01713 Smr domain 93 172 7.0E-18 T 25-04-2017 IPR002625 Smr domain A4U88_RS14665 566b4217d321e120f8b57d899c814bdc 343 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 4 335 1.2E-73 T 25-04-2017 IPR017740 Type VI secretion system-associated, ImpA A4U88_RS14665 566b4217d321e120f8b57d899c814bdc 343 Pfam PF06812 ImpA, N-terminal, type VI secretion system 9 132 1.2E-38 T 25-04-2017 IPR010657 ImpA, N-terminal A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 2.5E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 2.5E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 2.5E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 Gene3D G3DSA:1.10.10.10 139 204 3.3E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 SMART SM00421 143 200 9.3E-9 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 196 1.7E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS23015 6dc13c4ffe841127470192f23c773543 207 SUPERFAMILY SSF46894 138 201 4.76E-13 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS07125 2db3d413df83856058bc25eb906b77b6 281 SUPERFAMILY SSF47413 38 86 5.96E-6 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07125 2db3d413df83856058bc25eb906b77b6 281 Pfam PF13560 Helix-turn-helix domain 12 93 1.6E-15 T 25-04-2017 A4U88_RS07125 2db3d413df83856058bc25eb906b77b6 281 Gene3D G3DSA:1.10.260.40 9 86 1.8E-15 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS07125 2db3d413df83856058bc25eb906b77b6 281 SMART SM00530 16 90 1.6E-6 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS01885 479c65adb3e5e992f144108928a26ad4 317 SUPERFAMILY SSF103481 43 145 9.81E-13 T 25-04-2017 A4U88_RS01885 479c65adb3e5e992f144108928a26ad4 317 Pfam PF00892 EamA-like transporter family 10 144 8.2E-25 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS01885 479c65adb3e5e992f144108928a26ad4 317 Pfam PF00892 EamA-like transporter family 161 292 3.8E-15 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS23830 c045759ca195bcb24e1ee579fa0c913e 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 5.0E-132 T 25-04-2017 IPR005229 Conserved hypothetical protein CHP00255 A4U88_RS23830 c045759ca195bcb24e1ee579fa0c913e 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 3.5E-34 T 25-04-2017 IPR013551 Domain of unknown function DUF1732 A4U88_RS23830 c045759ca195bcb24e1ee579fa0c913e 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 5.4E-44 T 25-04-2017 IPR013527 YicC-like, N-terminal A4U88_RS23690 d9d25c8b40db85fc5208e1a103c6aa6d 444 SUPERFAMILY SSF51261 268 442 1.88E-45 T 25-04-2017 IPR011055 Duplicated hybrid motif A4U88_RS23690 d9d25c8b40db85fc5208e1a103c6aa6d 444 Gene3D G3DSA:2.70.70.10 305 443 6.6E-37 T 25-04-2017 A4U88_RS23690 d9d25c8b40db85fc5208e1a103c6aa6d 444 Pfam PF01551 Peptidase family M23 345 438 6.7E-25 T 25-04-2017 IPR016047 Peptidase M23 A4U88_RS19570 07ac05e3ce6ef686e660d0545bf6b2d4 259 Pfam PF03609 PTS system sorbose-specific iic component 3 233 6.4E-73 T 25-04-2017 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 A4U88_RS05035 ca412cb44d6230b7e5ed3696e8c38326 163 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 45 146 9.7E-41 T 25-04-2017 A4U88_RS15215 1a8e1455411a859c1005e310889d416f 130 Pfam PF06078 Bacterial protein of unknown function (DUF937) 6 106 6.4E-10 T 25-04-2017 IPR009282 Protein of unknown function DUF937 A4U88_RS15215 1a8e1455411a859c1005e310889d416f 130 Gene3D G3DSA:1.10.10.690 1 129 6.2E-42 T 25-04-2017 IPR027405 YidB-like A4U88_RS15215 1a8e1455411a859c1005e310889d416f 130 SUPERFAMILY SSF140804 4 119 2.62E-33 T 25-04-2017 IPR027405 YidB-like A4U88_RS20035 262c6ab336aa22813e28905434b1e03b 202 SUPERFAMILY SSF100950 10 196 1.95E-56 T 25-04-2017 A4U88_RS20035 262c6ab336aa22813e28905434b1e03b 202 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 1.0E-53 T 25-04-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase A4U88_RS20035 262c6ab336aa22813e28905434b1e03b 202 Gene3D G3DSA:3.40.50.10420 11 192 1.0E-58 T 25-04-2017 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain A4U88_RS20035 262c6ab336aa22813e28905434b1e03b 202 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 12 192 1.5E-46 T 25-04-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase A4U88_RS20035 262c6ab336aa22813e28905434b1e03b 202 PIRSF PIRSF006806 6 193 4.7E-36 T 25-04-2017 IPR002698 5-formyltetrahydrofolate cyclo-ligase A4U88_RS14685 3263e60e40bea5da62d2b256acd68938 160 Pfam PF05638 Type VI secretion system effector, Hcp 6 133 3.0E-38 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS14685 3263e60e40bea5da62d2b256acd68938 160 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 113 7.1E-17 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS14685 3263e60e40bea5da62d2b256acd68938 160 Gene3D G3DSA:2.30.110.20 1 159 1.9E-62 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS14685 3263e60e40bea5da62d2b256acd68938 160 SUPERFAMILY SSF141452 2 158 6.41E-50 T 25-04-2017 IPR008514 Type VI secretion system effector, Hcp A4U88_RS06825 49fa4213d114029aa82caf52318608fc 609 Gene3D G3DSA:3.90.1300.10 42 458 3.0E-103 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS06825 49fa4213d114029aa82caf52318608fc 609 Pfam PF01425 Amidase 42 447 3.7E-87 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS06825 49fa4213d114029aa82caf52318608fc 609 SUPERFAMILY SSF75304 41 456 2.88E-107 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS06825 49fa4213d114029aa82caf52318608fc 609 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 47 604 1.1E-243 T 25-04-2017 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 A4U88_RS07245 6ad3d09da85aee4cbba1b6571e3c9b3c 326 SUPERFAMILY SSF56317 208 303 2.35E-59 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS07245 6ad3d09da85aee4cbba1b6571e3c9b3c 326 SUPERFAMILY SSF56317 5 177 2.35E-59 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS07245 6ad3d09da85aee4cbba1b6571e3c9b3c 326 Gene3D G3DSA:3.60.110.10 5 304 5.6E-64 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS07245 6ad3d09da85aee4cbba1b6571e3c9b3c 326 Pfam PF00795 Carbon-nitrogen hydrolase 6 281 6.8E-41 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS16295 d786e64e9e70d33d9ef96b8643ae8735 360 Gene3D G3DSA:1.10.3470.10 25 357 1.5E-98 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS16295 d786e64e9e70d33d9ef96b8643ae8735 360 SUPERFAMILY SSF81345 24 355 4.45E-79 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS16295 d786e64e9e70d33d9ef96b8643ae8735 360 Pfam PF01032 FecCD transport family 42 355 5.2E-85 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS14255 55054e814318f2d4ce2d6ef8a75baa60 67 SUPERFAMILY SSF54786 1 60 4.32E-20 T 25-04-2017 A4U88_RS14255 55054e814318f2d4ce2d6ef8a75baa60 67 Gene3D G3DSA:3.30.920.30 1 60 2.8E-26 T 25-04-2017 A4U88_RS14255 55054e814318f2d4ce2d6ef8a75baa60 67 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 4 59 1.6E-23 T 25-04-2017 IPR012933 HicA mRNA interferase family GO:0003729 A4U88_RS24205 f65ca589cde8dc7e5661db6cf6bd1655 350 Gene3D G3DSA:3.40.50.1820 147 299 6.7E-10 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS24205 f65ca589cde8dc7e5661db6cf6bd1655 350 SUPERFAMILY SSF53474 151 296 7.39E-11 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS09895 788fa42c69d38c64b207d512af988738 208 Pfam PF04356 Protein of unknown function (DUF489) 7 198 1.0E-77 T 25-04-2017 IPR007451 Uncharacterised protein family UPF0274 A4U88_RS09895 788fa42c69d38c64b207d512af988738 208 Gene3D G3DSA:1.10.3890.10 2 208 3.1E-87 T 25-04-2017 IPR007451 Uncharacterised protein family UPF0274 A4U88_RS09895 788fa42c69d38c64b207d512af988738 208 SUPERFAMILY SSF101322 2 207 1.44E-80 T 25-04-2017 IPR007451 Uncharacterised protein family UPF0274 A4U88_RS09895 788fa42c69d38c64b207d512af988738 208 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 206 36.258 T 25-04-2017 IPR007451 Uncharacterised protein family UPF0274 A4U88_RS09895 788fa42c69d38c64b207d512af988738 208 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 197 3.0E-81 T 25-04-2017 IPR007451 Uncharacterised protein family UPF0274 A4U88_RS16030 0807a50f67ae71566d1961cb2a4b1caa 100 SUPERFAMILY SSF47413 20 96 8.31E-14 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16030 0807a50f67ae71566d1961cb2a4b1caa 100 Pfam PF13744 Helix-turn-helix domain 12 88 2.6E-9 T 25-04-2017 A4U88_RS16030 0807a50f67ae71566d1961cb2a4b1caa 100 Gene3D G3DSA:1.10.260.40 32 84 5.8E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS23840 05ab1b35e89f433083f2e17205d2617d 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 8.7E-19 T 25-04-2017 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 A4U88_RS23840 05ab1b35e89f433083f2e17205d2617d 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 3.7E-59 T 25-04-2017 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 A4U88_RS05305 bc1897627a17e18f2d2e8d56a8a232a3 359 Gene3D G3DSA:3.40.109.10 103 119 1.3E-17 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS05305 bc1897627a17e18f2d2e8d56a8a232a3 359 Gene3D G3DSA:3.40.109.10 8 33 1.3E-17 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS05305 bc1897627a17e18f2d2e8d56a8a232a3 359 Gene3D G3DSA:3.40.109.10 243 337 1.3E-17 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS05305 bc1897627a17e18f2d2e8d56a8a232a3 359 SUPERFAMILY SSF55469 8 38 2.49E-6 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS05305 bc1897627a17e18f2d2e8d56a8a232a3 359 SUPERFAMILY SSF55469 113 166 3.37E-7 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS05305 bc1897627a17e18f2d2e8d56a8a232a3 359 SUPERFAMILY SSF55469 240 330 3.37E-7 T 25-04-2017 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 SUPERFAMILY SSF51735 1 261 1.14E-66 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 Gene3D G3DSA:3.40.50.720 1 261 4.7E-71 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 261 8.6E-45 T 25-04-2017 A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 7.4E-27 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 7.4E-27 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 7.4E-27 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 7.4E-27 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS20240 9b57313567ed256c943cf0fc7b55db95 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.4E-27 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 0.0025 T 25-04-2017 A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 5.6E-23 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 5.6E-23 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 5.6E-23 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 5.6E-23 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 5.6E-23 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.6E-23 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 Pfam PF00106 short chain dehydrogenase 14 209 1.6E-50 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 Gene3D G3DSA:3.40.50.720 6 242 6.0E-65 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12975 ac87dcbc5168c0292474e2c7b39811be 253 SUPERFAMILY SSF51735 10 241 1.07E-61 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS17520 336aed8b3e5f6badcc525dac3c30060c 351 Pfam PF01032 FecCD transport family 35 344 1.7E-87 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS17520 336aed8b3e5f6badcc525dac3c30060c 351 Gene3D G3DSA:1.10.3470.10 27 346 2.6E-96 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS17520 336aed8b3e5f6badcc525dac3c30060c 351 SUPERFAMILY SSF81345 24 344 8.37E-79 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS07855 1d4b3d64d1f578398641599267cb0b08 274 Gene3D G3DSA:3.40.50.720 1 217 5.4E-22 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07855 1d4b3d64d1f578398641599267cb0b08 274 SUPERFAMILY SSF51735 2 266 4.65E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS07855 1d4b3d64d1f578398641599267cb0b08 274 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 213 3.4E-7 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 Pfam PF00561 alpha/beta hydrolase fold 37 163 2.7E-18 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 Gene3D G3DSA:3.40.50.1820 16 291 1.9E-61 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00412 Epoxide hydrolase signature 62 77 1.0E-11 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00412 Epoxide hydrolase signature 106 119 1.0E-11 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00412 Epoxide hydrolase signature 42 60 1.0E-11 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00412 Epoxide hydrolase signature 267 289 1.0E-11 T 25-04-2017 IPR000639 Epoxide hydrolase-like GO:0003824 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 SUPERFAMILY SSF53474 14 291 1.97E-67 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 62 77 1.5E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 1.5E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS12300 d9fca00605aa11199880d3ccfb802dd0 297 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 1.5E-5 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS19440 7c0f7bd25b1abce84d89e0dbbdc75f67 148 Pfam PF10713 Protein of unknown function (DUF2509) 17 146 4.2E-37 T 25-04-2017 IPR019652 Protein of unknown function DUF2509 A4U88_RS11335 726cbbd957fe492cd8034f1be8a559e7 352 SUPERFAMILY SSF144052 24 341 9.94E-14 T 25-04-2017 A4U88_RS08925 cb7c6a489bf3b9d35dd92e5e38e69c9a 204 Gene3D G3DSA:3.40.190.10 84 168 1.1E-17 T 25-04-2017 A4U88_RS08925 cb7c6a489bf3b9d35dd92e5e38e69c9a 204 Gene3D G3DSA:3.40.190.10 1 83 1.9E-20 T 25-04-2017 A4U88_RS08925 cb7c6a489bf3b9d35dd92e5e38e69c9a 204 Pfam PF03466 LysR substrate binding domain 1 199 6.6E-34 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS08925 cb7c6a489bf3b9d35dd92e5e38e69c9a 204 SUPERFAMILY SSF53850 1 202 5.79E-35 T 25-04-2017 A4U88_RS15840 862c6bb2ee52c41f1e05a0fb97cf0294 294 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 1 294 166.397 T 25-04-2017 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 A4U88_RS15840 862c6bb2ee52c41f1e05a0fb97cf0294 294 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 20 289 2.3E-99 T 25-04-2017 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 A4U88_RS15840 862c6bb2ee52c41f1e05a0fb97cf0294 294 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 20 288 3.5E-82 T 25-04-2017 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 A4U88_RS14545 1674a709c1d127efef07976977506845 166 Pfam PF01584 CheW-like domain 18 154 1.3E-37 T 25-04-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 A4U88_RS14545 1674a709c1d127efef07976977506845 166 SUPERFAMILY SSF50341 17 157 5.1E-40 T 25-04-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 A4U88_RS14545 1674a709c1d127efef07976977506845 166 Gene3D G3DSA:2.30.30.40 92 144 1.1E-8 T 25-04-2017 A4U88_RS14545 1674a709c1d127efef07976977506845 166 SMART SM00260 14 151 3.6E-45 T 25-04-2017 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 A4U88_RS14545 1674a709c1d127efef07976977506845 166 Gene3D G3DSA:2.40.50.180 56 91 5.8E-11 T 25-04-2017 A4U88_RS23250 cb00a19ced410d6b35c7cabe817f14a1 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 74 6.0E-6 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS23250 cb00a19ced410d6b35c7cabe817f14a1 216 SUPERFAMILY SSF46689 23 85 6.48E-9 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS23250 cb00a19ced410d6b35c7cabe817f14a1 216 Gene3D G3DSA:1.10.357.10 22 166 8.0E-18 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS13085 facee9d0e23c152496f394189bbf508d 98 Gene3D G3DSA:3.30.70.1060 1 98 7.2E-38 T 25-04-2017 A4U88_RS13085 facee9d0e23c152496f394189bbf508d 98 Pfam PF03795 YCII-related domain 1 95 2.2E-30 T 25-04-2017 IPR005545 YCII-related A4U88_RS13085 facee9d0e23c152496f394189bbf508d 98 SUPERFAMILY SSF54909 1 98 3.93E-32 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS03255 0fcddc04fcba9c3fbfeacd7ec6ab09c9 57 Pfam PF15894 Inhibitor of glucose uptake transporter SgrT 6 54 4.4E-28 T 25-04-2017 IPR031767 Inhibitor of glucose uptake transporter SgrT GO:0046325 A4U88_RS19185 ca5cb29bd30614f2a4a003107a2ef89b 129 SUPERFAMILY SSF54593 3 128 1.05E-33 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS19185 ca5cb29bd30614f2a4a003107a2ef89b 129 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 4.3E-22 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS19185 ca5cb29bd30614f2a4a003107a2ef89b 129 Gene3D G3DSA:3.10.180.10 3 128 2.5E-37 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS02705 0a11d819b0d9427b46b68b63c892e490 264 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 4 252 1.0E-133 T 25-04-2017 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 A4U88_RS02705 0a11d819b0d9427b46b68b63c892e490 264 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 16 242 1.2E-66 T 25-04-2017 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 A4U88_RS02705 0a11d819b0d9427b46b68b63c892e490 264 Gene3D G3DSA:3.20.20.60 2 253 2.5E-84 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS02705 0a11d819b0d9427b46b68b63c892e490 264 SUPERFAMILY SSF51621 1 252 2.86E-86 T 25-04-2017 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Gene3D G3DSA:3.40.50.720 1 152 4.9E-51 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Gene3D G3DSA:3.40.50.720 233 376 6.4E-38 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 SUPERFAMILY SSF51735 1 152 5.46E-37 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Pfam PF02254 TrkA-N domain 3 124 2.3E-30 T 25-04-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Pfam PF02254 TrkA-N domain 235 350 6.6E-26 T 25-04-2017 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 SUPERFAMILY SSF116726 148 226 6.02E-10 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Gene3D G3DSA:3.30.70.1450 154 226 4.9E-4 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Gene3D G3DSA:3.30.70.1450 390 437 5.1E-4 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Pfam PF02080 TrkA-C domain 156 225 1.2E-11 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 Pfam PF02080 TrkA-C domain 390 451 2.2E-10 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 SUPERFAMILY SSF116726 390 440 3.01E-7 T 25-04-2017 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.3E-35 T 25-04-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.3E-35 T 25-04-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.3E-35 T 25-04-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.3E-35 T 25-04-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.3E-35 T 25-04-2017 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 A4U88_RS22185 40edd53b8d4520ae0979dab8e57b3cc8 458 SUPERFAMILY SSF51735 232 376 5.05E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06120 388f1bbdc8908727ea10af47f3ce919c 396 Pfam PF05987 Bacterial protein of unknown function (DUF898) 12 388 2.0E-96 T 25-04-2017 IPR010295 Protein of unknown function DUF898 A4U88_RS20785 5a563df50d2e906737767e92a0ca4aad 220 Pfam PF09335 SNARE associated Golgi protein 48 173 2.6E-19 T 25-04-2017 IPR032816 SNARE associated Golgi protein A4U88_RS12280 315844c718ffff984aa665ba0dbd1c7e 322 SUPERFAMILY SSF103481 217 307 2.62E-5 T 25-04-2017 A4U88_RS12280 315844c718ffff984aa665ba0dbd1c7e 322 SUPERFAMILY SSF103481 38 143 7.72E-11 T 25-04-2017 A4U88_RS12280 315844c718ffff984aa665ba0dbd1c7e 322 Pfam PF00892 EamA-like transporter family 3 138 4.1E-17 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS15575 8293f6c606c9115fa6c01aef50fce50b 321 Pfam PF06812 ImpA, N-terminal, type VI secretion system 13 122 2.3E-11 T 25-04-2017 IPR010657 ImpA, N-terminal A4U88_RS09015 b134ce0b261d76da00a1ae6ba892f007 376 Pfam PF01757 Acyltransferase family 11 358 1.1E-31 T 25-04-2017 IPR002656 Acyltransferase 3 GO:0016747 A4U88_RS09745 2319786732b8cc8b47377c8f00805fce 366 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 192 350 1.5E-42 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS09745 2319786732b8cc8b47377c8f00805fce 366 SUPERFAMILY SSF55073 199 349 1.02E-40 T 25-04-2017 IPR029787 Nucleotide cyclase A4U88_RS09745 2319786732b8cc8b47377c8f00805fce 366 Gene3D G3DSA:3.30.70.270 196 350 2.3E-46 T 25-04-2017 A4U88_RS09745 2319786732b8cc8b47377c8f00805fce 366 SMART SM00267 184 351 4.1E-50 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS09745 2319786732b8cc8b47377c8f00805fce 366 Pfam PF00990 Diguanylate cyclase, GGDEF domain 194 347 3.8E-40 T 25-04-2017 IPR000160 GGDEF domain A4U88_RS07030 d21a1377d6af48c3ed23afd5e5cfbd8c 164 Pfam PF11086 Protein of unknown function (DUF2878) 9 152 4.6E-23 T 25-04-2017 IPR021306 Protein of unknown function DUF2878 A4U88_RS16055 5400f0187ad6cfedd531f9008ffa9596 121 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 71 82 - T 25-04-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 A4U88_RS16055 5400f0187ad6cfedd531f9008ffa9596 121 Gene3D G3DSA:1.10.3830.10 4 119 2.2E-39 T 25-04-2017 A4U88_RS16055 5400f0187ad6cfedd531f9008ffa9596 121 Pfam PF01219 Prokaryotic diacylglycerol kinase 18 118 7.8E-31 T 25-04-2017 IPR000829 DAGK family GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 Gene3D G3DSA:3.50.50.60 106 300 2.9E-22 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 288 1.0E-23 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 SUPERFAMILY SSF51905 3 306 3.55E-35 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 Gene3D G3DSA:3.50.50.60 5 105 2.8E-17 T 25-04-2017 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PIRSF PIRSF037495 1 419 3.4E-109 T 25-04-2017 IPR017224 Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 4.5E-16 T 25-04-2017 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 4.5E-16 T 25-04-2017 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 4.5E-16 T 25-04-2017 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 4.5E-16 T 25-04-2017 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 101 109 3.5E-10 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 3.5E-10 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 3.5E-10 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08865 b1ba1485147db53c1c97f0cd13b8e155 422 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 290 3.5E-10 T 25-04-2017 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 A4U88_RS08655 5b26721895feafe763b008932546271d 194 Gene3D G3DSA:2.60.40.1090 30 193 2.7E-20 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS08655 5b26721895feafe763b008932546271d 194 Pfam PF00419 Fimbrial protein 31 193 5.9E-13 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS08655 5b26721895feafe763b008932546271d 194 SUPERFAMILY SSF49401 31 193 4.23E-20 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS21360 d6ec726afa0b24658e0fd79c20e1d70a 182 Pfam PF02470 MlaD protein 39 116 1.0E-20 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS21360 d6ec726afa0b24658e0fd79c20e1d70a 182 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 152 1.1E-55 T 25-04-2017 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 A4U88_RS23380 582613b33f146647c7bb1ab0529b46fe 112 Pfam PF04219 Protein of unknown function, DUF 10 98 1.2E-39 T 25-04-2017 IPR007335 Protein of unknown function DUF413 A4U88_RS18225 981f2c735884fca9214af00a9f3eda40 204 Gene3D G3DSA:1.10.357.10 9 172 5.6E-21 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS18225 981f2c735884fca9214af00a9f3eda40 204 SUPERFAMILY SSF46689 12 94 7.7E-14 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS18225 981f2c735884fca9214af00a9f3eda40 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 70 7.3E-9 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS20615 b19bfaeaf6684c2fbe662cc842776a94 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 2.8E-44 T 25-04-2017 IPR007416 Protein of unknown function DUF469 A4U88_RS14400 4791075ee7cb541726058b44c340e92a 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 3.8E-31 T 25-04-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 A4U88_RS14400 4791075ee7cb541726058b44c340e92a 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 3.8E-31 T 25-04-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 A4U88_RS14400 4791075ee7cb541726058b44c340e92a 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 3.8E-31 T 25-04-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 A4U88_RS14400 4791075ee7cb541726058b44c340e92a 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 3.8E-31 T 25-04-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 A4U88_RS14400 4791075ee7cb541726058b44c340e92a 260 Pfam PF01311 Bacterial export proteins, family 1 15 246 2.3E-67 T 25-04-2017 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 A4U88_RS14400 4791075ee7cb541726058b44c340e92a 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 14 254 1.0E-73 T 25-04-2017 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 A4U88_RS01005 967773627d7755a93ae9b19a745457b0 260 Pfam PF01026 TatD related DNase 2 257 1.4E-67 T 25-04-2017 IPR001130 TatD family GO:0016788 A4U88_RS01005 967773627d7755a93ae9b19a745457b0 260 Gene3D G3DSA:3.20.20.140 1 259 7.0E-86 T 25-04-2017 A4U88_RS01005 967773627d7755a93ae9b19a745457b0 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 25-04-2017 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 A4U88_RS01005 967773627d7755a93ae9b19a745457b0 260 PIRSF PIRSF005902 1 260 1.0E-73 T 25-04-2017 IPR001130 TatD family GO:0016788 A4U88_RS01005 967773627d7755a93ae9b19a745457b0 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 260 63.513 T 25-04-2017 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 A4U88_RS01005 967773627d7755a93ae9b19a745457b0 260 SUPERFAMILY SSF51556 1 259 3.41E-81 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS22535 bd7dd05b425ea592bce5d6e3cfbffbfa 508 Pfam PF05872 Bacterial protein of unknown function (DUF853) 11 508 7.1E-233 T 25-04-2017 IPR033186 Helicase HerA-like C-terminal A4U88_RS22535 bd7dd05b425ea592bce5d6e3cfbffbfa 508 SUPERFAMILY SSF52540 19 374 5.24E-51 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22535 bd7dd05b425ea592bce5d6e3cfbffbfa 508 Gene3D G3DSA:3.40.50.300 11 113 6.9E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22535 bd7dd05b425ea592bce5d6e3cfbffbfa 508 Gene3D G3DSA:3.40.50.300 209 388 6.9E-58 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22195 a02623b5d2cfdceb5c2b51d618e62f69 145 Pfam PF01797 Transposase IS200 like 12 129 2.6E-39 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS22195 a02623b5d2cfdceb5c2b51d618e62f69 145 Gene3D G3DSA:3.30.70.1290 4 132 9.1E-50 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS22195 a02623b5d2cfdceb5c2b51d618e62f69 145 SUPERFAMILY SSF143422 4 130 9.55E-45 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS22195 a02623b5d2cfdceb5c2b51d618e62f69 145 SMART SM01321 11 129 4.8E-42 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS23280 76ecf14ab4516d283ddde8f57b2733ad 339 Pfam PF03631 Virulence factor BrkB 66 325 1.2E-45 T 25-04-2017 IPR017039 Virulence factor BrkB A4U88_RS23280 76ecf14ab4516d283ddde8f57b2733ad 339 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 52 325 6.2E-124 T 25-04-2017 IPR005274 Inner membrane protein YhjD A4U88_RS04280 f4a7267f42d4c0bf2c71f0a578a01f09 217 SUPERFAMILY SSF49401 59 217 6.46E-29 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS04280 f4a7267f42d4c0bf2c71f0a578a01f09 217 Gene3D G3DSA:2.60.40.1090 58 216 1.4E-27 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS24160 a0868117b53cce779498a75c8ffb5028 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 1.1E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24160 a0868117b53cce779498a75c8ffb5028 296 Gene3D G3DSA:1.10.3720.10 26 295 1.7E-38 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24160 a0868117b53cce779498a75c8ffb5028 296 SUPERFAMILY SSF161098 37 285 3.79E-32 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS24160 a0868117b53cce779498a75c8ffb5028 296 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 3.6E-85 T 25-04-2017 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 A4U88_RS04115 ae18a45cc3c17c505449fc659cdfc3e2 256 SUPERFAMILY SSF141523 39 156 2.35E-9 T 25-04-2017 A4U88_RS04115 ae18a45cc3c17c505449fc659cdfc3e2 256 Pfam PF03734 L,D-transpeptidase catalytic domain 42 157 1.4E-7 T 25-04-2017 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 A4U88_RS10675 8c4b5dce69924fff794342a71330ee78 498 Pfam PF01458 Uncharacterized protein family (UPF0051) 237 469 2.6E-67 T 25-04-2017 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 A4U88_RS10675 8c4b5dce69924fff794342a71330ee78 498 SUPERFAMILY SSF101960 128 495 1.09E-134 T 25-04-2017 A4U88_RS10675 8c4b5dce69924fff794342a71330ee78 498 SUPERFAMILY SSF101960 41 86 1.09E-134 T 25-04-2017 A4U88_RS10675 8c4b5dce69924fff794342a71330ee78 498 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 489 2.6E-193 T 25-04-2017 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 279 295 2.5E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 264 279 2.5E-6 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 SMART SM00342 211 295 3.1E-28 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 Gene3D G3DSA:1.10.10.60 247 298 1.1E-17 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 SUPERFAMILY SSF46689 246 298 8.06E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 Pfam PF14525 AraC-binding-like domain 32 182 5.0E-23 T 25-04-2017 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 Gene3D G3DSA:1.10.10.60 188 246 6.9E-7 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS04440 e14f4f494bbbd45cdab65dc7cb729e17 299 Pfam PF12833 Helix-turn-helix domain 217 297 4.5E-23 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS13735 600f7db4b2295b1f4e80b27cde06b257 107 Gene3D G3DSA:1.10.10.710 20 86 2.5E-27 T 25-04-2017 IPR009813 Uncharacterised protein family YebG A4U88_RS13735 600f7db4b2295b1f4e80b27cde06b257 107 Pfam PF07130 YebG protein 1 74 6.3E-35 T 25-04-2017 IPR009813 Uncharacterised protein family YebG A4U88_RS11030 2ca8fb97feda754024c590e0007a395a 181 Pfam PF13521 AAA domain 7 170 2.5E-42 T 25-04-2017 A4U88_RS11030 2ca8fb97feda754024c590e0007a395a 181 Gene3D G3DSA:3.40.50.300 6 174 3.9E-25 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS11030 2ca8fb97feda754024c590e0007a395a 181 SUPERFAMILY SSF52540 6 163 5.33E-18 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS03870 f5ea06a7b7d3a81e5ebc02d2b2bfc7b6 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 347 4.4E-168 T 25-04-2017 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 A4U88_RS03870 f5ea06a7b7d3a81e5ebc02d2b2bfc7b6 358 SUPERFAMILY SSF51569 8 346 1.56E-138 T 25-04-2017 A4U88_RS03870 f5ea06a7b7d3a81e5ebc02d2b2bfc7b6 358 PIRSF PIRSF001361 1 354 1.0E-163 T 25-04-2017 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 A4U88_RS03870 f5ea06a7b7d3a81e5ebc02d2b2bfc7b6 358 Gene3D G3DSA:3.20.20.70 10 348 7.7E-156 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS03870 f5ea06a7b7d3a81e5ebc02d2b2bfc7b6 358 Pfam PF00793 DAHP synthetase I family 41 340 1.5E-106 T 25-04-2017 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 SMART SM00387 562 675 1.2E-8 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 Gene3D G3DSA:1.20.120.160 773 891 1.6E-29 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 SUPERFAMILY SSF55874 504 671 1.37E-18 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 Gene3D G3DSA:3.30.565.10 519 680 2.7E-21 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 SUPERFAMILY SSF47226 800 891 1.03E-18 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 Pfam PF01627 Hpt domain 813 869 6.5E-10 T 25-04-2017 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 Pfam PF16359 RcsD-ABL domain 684 784 2.3E-38 T 25-04-2017 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 9 892 26.139 T 25-04-2017 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 SUPERFAMILY SSF47384 435 515 6.87E-6 T 25-04-2017 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 A4U88_RS16660 c97011e099750e9e40f65fc9ba59d84d 900 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 672 7.6E-14 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS15640 188364c3a3d967ed497b414a94c938a5 227 SUPERFAMILY SSF48613 10 223 6.82E-66 T 25-04-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 A4U88_RS15640 188364c3a3d967ed497b414a94c938a5 227 Pfam PF03070 TENA/THI-4/PQQC family 21 225 2.1E-45 T 25-04-2017 IPR004305 Thiaminase-2/PQQC A4U88_RS15640 188364c3a3d967ed497b414a94c938a5 227 Gene3D G3DSA:1.20.910.10 11 225 5.5E-72 T 25-04-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 397 412 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 251 270 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 366 384 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 222 238 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 342 360 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 32 57 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 124 143 8.1E-23 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 Pfam PF01019 Gamma-glutamyltranspeptidase 25 523 2.1E-125 T 25-04-2017 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 A4U88_RS04020 c2ac75fb74f69df1128b9eca7a6008c3 528 SUPERFAMILY SSF56235 6 528 2.12E-144 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS04365 9c9b96702d44935de2ab2f77d017d3bd 251 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 7 240 5.8E-118 T 25-04-2017 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 A4U88_RS04365 9c9b96702d44935de2ab2f77d017d3bd 251 Pfam PF03070 TENA/THI-4/PQQC family 15 223 8.0E-63 T 25-04-2017 IPR004305 Thiaminase-2/PQQC A4U88_RS04365 9c9b96702d44935de2ab2f77d017d3bd 251 SUPERFAMILY SSF48613 5 249 5.44E-78 T 25-04-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 A4U88_RS04365 9c9b96702d44935de2ab2f77d017d3bd 251 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 251 139.961 T 25-04-2017 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420 A4U88_RS04365 9c9b96702d44935de2ab2f77d017d3bd 251 Gene3D G3DSA:1.20.910.10 3 251 2.6E-125 T 25-04-2017 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 A4U88_RS18240 26234ce6cf9475e95846c3625d9fe465 654 Pfam PF04632 Fusaric acid resistance protein family 23 514 8.4E-37 T 25-04-2017 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 A4U88_RS22755 173804f984756ee66501a91718367fe6 74 SMART SM00899 1 72 1.7E-10 T 25-04-2017 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 A4U88_RS22755 173804f984756ee66501a91718367fe6 74 Pfam PF04023 FeoA domain 2 64 4.9E-10 T 25-04-2017 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 A4U88_RS22755 173804f984756ee66501a91718367fe6 74 SUPERFAMILY SSF50037 2 69 1.34E-15 T 25-04-2017 IPR008988 Transcriptional repressor, C-terminal A4U88_RS05040 6a4deff484b8647c612f58f511822d4b 104 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 8 87 7.1E-27 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS05040 6a4deff484b8647c612f58f511822d4b 104 Gene3D G3DSA:1.10.10.10 7 89 1.3E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS05040 6a4deff484b8647c612f58f511822d4b 104 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 7 82 4.8E-15 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS05040 6a4deff484b8647c612f58f511822d4b 104 SUPERFAMILY SSF46767 7 88 1.7E-25 T 25-04-2017 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 336 51.779 T 25-04-2017 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 239 3.2E-8 T 25-04-2017 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 125 4.1E-25 T 25-04-2017 IPR000683 Oxidoreductase, N-terminal GO:0016491 A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 SUPERFAMILY SSF51735 3 154 2.47E-40 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 SUPERFAMILY SSF55347 133 295 2.09E-16 T 25-04-2017 A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 Gene3D G3DSA:3.40.50.720 2 151 1.6E-39 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS22905 b1d91ee0e392d1f973fd78ca26cff362 337 Gene3D G3DSA:3.30.360.10 152 260 1.1E-41 T 25-04-2017 A4U88_RS09250 7b4758d6f88576c338443750a14ca66f 121 Pfam PF13788 Domain of unknown function (DUF4180) 10 119 4.2E-35 T 25-04-2017 IPR025438 Domain of unknown function DUF4180 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 495 5.9E-182 T 25-04-2017 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 Pfam PF00361 Proton-conducting membrane transporter 134 430 7.4E-71 T 25-04-2017 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 2.2E-36 T 25-04-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 2.2E-36 T 25-04-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 2.2E-36 T 25-04-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 2.2E-36 T 25-04-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS16815 3f3319323ff031896187f76422618df5 509 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 2.2E-36 T 25-04-2017 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 Gene3D G3DSA:3.40.190.10 91 171 2.0E-7 T 25-04-2017 A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 SUPERFAMILY SSF46785 5 111 3.48E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 Gene3D G3DSA:1.10.10.10 4 78 1.5E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 9.5E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 Pfam PF03466 LysR substrate binding domain 88 291 3.7E-43 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 Gene3D G3DSA:3.40.190.10 172 259 1.7E-24 T 25-04-2017 A4U88_RS19535 420ef5824385971cea99e6f98b0b5d52 302 SUPERFAMILY SSF53850 88 295 1.12E-45 T 25-04-2017 A4U88_RS04290 7710d34c75f6e59880614a86d57bf01f 158 Gene3D G3DSA:2.60.40.1090 22 158 8.2E-7 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS04290 7710d34c75f6e59880614a86d57bf01f 158 Pfam PF00419 Fimbrial protein 25 158 6.9E-18 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS04290 7710d34c75f6e59880614a86d57bf01f 158 SUPERFAMILY SSF49401 32 158 2.83E-23 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS14230 ad8342cc9da2efef521704c81791323e 432 Pfam PF04261 Dyp-type peroxidase family 71 419 8.4E-116 T 25-04-2017 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 A4U88_RS14230 ad8342cc9da2efef521704c81791323e 432 SUPERFAMILY SSF54909 64 424 8.4E-98 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS14230 ad8342cc9da2efef521704c81791323e 432 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 16 430 1.7E-173 T 25-04-2017 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 A4U88_RS14230 ad8342cc9da2efef521704c81791323e 432 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 71 419 2.0E-102 T 25-04-2017 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 9 389 1.8E-89 T 25-04-2017 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 Gene3D G3DSA:1.20.1250.20 214 393 2.9E-14 T 25-04-2017 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 Gene3D G3DSA:1.20.1250.20 15 193 2.4E-27 T 25-04-2017 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 PRINTS PR01035 Tetracycline resistance protein signature 22 38 1.4E-6 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 PRINTS PR01035 Tetracycline resistance protein signature 279 300 1.4E-6 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 PRINTS PR01035 Tetracycline resistance protein signature 106 127 1.4E-6 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 SUPERFAMILY SSF103473 5 393 1.31E-65 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS05560 b1d532ca320e41ba37db03b388765dd2 396 Pfam PF07690 Major Facilitator Superfamily 18 359 5.1E-45 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS10585 f617f5af1e3a9990503178a7841391e8 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 4 449 2.7E-158 T 25-04-2017 IPR003846 Uncharacterised protein family UPF0061 A4U88_RS10585 f617f5af1e3a9990503178a7841391e8 480 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 1 466 45.352 T 25-04-2017 IPR003846 Uncharacterised protein family UPF0061 A4U88_RS06560 369e8fd3e2f04eeecd9bead494444363 335 Gene3D G3DSA:1.10.3470.10 5 334 4.7E-89 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS06560 369e8fd3e2f04eeecd9bead494444363 335 SUPERFAMILY SSF81345 5 332 4.97E-73 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS06560 369e8fd3e2f04eeecd9bead494444363 335 Pfam PF01032 FecCD transport family 21 332 4.4E-81 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 SMART SM00925 125 258 8.9E-70 T 25-04-2017 IPR005300 Lytic transglycosylase MltA GO:0004553 A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 Gene3D G3DSA:2.40.40.10 79 164 2.9E-14 T 25-04-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 Gene3D G3DSA:2.40.40.10 167 357 3.3E-47 T 25-04-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 SUPERFAMILY SSF50685 25 354 6.28E-109 T 25-04-2017 IPR009009 RlpA-like protein, double-psi beta-barrel domain A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 Pfam PF06725 3D domain 278 355 1.7E-24 T 25-04-2017 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 PIRSF PIRSF019422 1 366 1.5E-81 T 25-04-2017 IPR026044 Membrane-bound lytic murein transglycosylase A A4U88_RS19385 e939c319706e89fa72ca9a550ded5740 378 Pfam PF03562 MltA specific insert domain 90 258 4.5E-38 T 25-04-2017 IPR005300 Lytic transglycosylase MltA GO:0004553 A4U88_RS01020 de7b8aba9b6698c7f0eb8f819b39c90b 241 SUPERFAMILY SSF52317 3 222 5.65E-32 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS01020 de7b8aba9b6698c7f0eb8f819b39c90b 241 Pfam PF03575 Peptidase family S51 3 204 7.7E-46 T 25-04-2017 IPR005320 Peptidase S51 GO:0006508|GO:0008236 A4U88_RS01020 de7b8aba9b6698c7f0eb8f819b39c90b 241 Gene3D G3DSA:3.40.50.880 1 227 1.7E-65 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 162 2.5E-35 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 24 41 2.5E-35 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 191 2.5E-35 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 98 109 2.5E-35 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 193 210 2.5E-35 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 247 2.5E-35 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 159 187 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 23 193 0.0047 T 25-04-2017 A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 32 264 1.2E-63 T 25-04-2017 A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 SUPERFAMILY SSF51735 22 265 7.54E-76 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 Gene3D G3DSA:3.40.50.720 16 265 7.6E-80 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 9.0E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 98 109 9.0E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12910 b69e3e1ca39da7dc64731c96a86c9da2 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 9.0E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS06845 cdce3cebd569cf1728df6b8d3ad9adfb 526 SUPERFAMILY SSF48371 116 221 7.2E-11 T 25-04-2017 IPR016024 Armadillo-type fold GO:0005488 A4U88_RS06845 cdce3cebd569cf1728df6b8d3ad9adfb 526 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 232 523 1.4E-129 T 25-04-2017 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type A4U88_RS06845 cdce3cebd569cf1728df6b8d3ad9adfb 526 Pfam PF13646 HEAT repeats 169 223 2.6E-7 T 25-04-2017 A4U88_RS06845 cdce3cebd569cf1728df6b8d3ad9adfb 526 Pfam PF02653 Branched-chain amino acid transport system / permease component 234 509 1.2E-50 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS06845 cdce3cebd569cf1728df6b8d3ad9adfb 526 Gene3D G3DSA:1.25.10.10 116 223 5.2E-11 T 25-04-2017 IPR011989 Armadillo-like helical A4U88_RS11945 43fafdfda55d7ad61469de476b03ba79 433 Gene3D G3DSA:2.120.10.30 62 431 5.4E-59 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS11945 43fafdfda55d7ad61469de476b03ba79 433 Gene3D G3DSA:2.120.10.30 14 20 5.4E-59 T 25-04-2017 IPR011042 Six-bladed beta-propeller, TolB-like A4U88_RS11945 43fafdfda55d7ad61469de476b03ba79 433 SUPERFAMILY SSF50952 124 431 1.96E-34 T 25-04-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 A4U88_RS11945 43fafdfda55d7ad61469de476b03ba79 433 SUPERFAMILY SSF50952 63 95 1.96E-34 T 25-04-2017 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 A4U88_RS11945 43fafdfda55d7ad61469de476b03ba79 433 Pfam PF07995 Glucose / Sorbosone dehydrogenase 197 358 4.2E-14 T 25-04-2017 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 A4U88_RS11510 6f508c537cadf99acd005007a9b62d9d 163 Pfam PF12680 SnoaL-like domain 47 145 4.7E-12 T 25-04-2017 IPR009959 Polyketide cyclase SnoaL-like domain A4U88_RS11510 6f508c537cadf99acd005007a9b62d9d 163 SUPERFAMILY SSF54427 44 151 3.58E-20 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS11510 6f508c537cadf99acd005007a9b62d9d 163 Gene3D G3DSA:3.10.450.50 40 152 3.3E-9 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS21125 3ca67b34730a999a8def03a3bf6ba635 168 Pfam PF01863 Protein of unknown function DUF45 96 149 6.9E-11 T 25-04-2017 IPR002725 Protein of unknown function DUF45 A4U88_RS21980 1d477799cb98a917856ffbc48ac1b69f 296 Gene3D G3DSA:1.10.3720.10 5 283 1.4E-63 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS21980 1d477799cb98a917856ffbc48ac1b69f 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 286 8.0E-16 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS21980 1d477799cb98a917856ffbc48ac1b69f 296 SUPERFAMILY SSF161098 8 296 1.03E-69 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09000 346e7f31e5d556e89e010bb2480a0a8c 167 Pfam PF10777 Inner membrane protein YlaC 1 153 1.3E-67 T 25-04-2017 IPR019713 Inner membrane protein YlaC A4U88_RS02205 89930b3c5d5622d88b9f7090f11a99ef 242 SUPERFAMILY SSF56235 2 236 2.04E-36 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS02205 89930b3c5d5622d88b9f7090f11a99ef 242 Pfam PF00227 Proteasome subunit 4 185 8.4E-8 T 25-04-2017 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5687128|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-983168 A4U88_RS02205 89930b3c5d5622d88b9f7090f11a99ef 242 Gene3D G3DSA:3.60.20.10 2 216 2.2E-16 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS02205 89930b3c5d5622d88b9f7090f11a99ef 242 PIRSF PIRSF009120 1 242 5.6E-111 T 25-04-2017 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 A4U88_RS17740 851e1accc6b4f613eef81cd68b244c97 133 SUPERFAMILY SSF55166 6 126 1.12E-25 T 25-04-2017 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 A4U88_RS17740 851e1accc6b4f613eef81cd68b244c97 133 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 60 126 1.4E-15 T 25-04-2017 A4U88_RS05285 aace8e573a5ab4d46baed9bf1a8f8dba 159 SUPERFAMILY SSF55826 2 155 4.32E-45 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS05285 aace8e573a5ab4d46baed9bf1a8f8dba 159 Gene3D G3DSA:3.90.960.10 1 157 3.1E-60 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS05285 aace8e573a5ab4d46baed9bf1a8f8dba 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 2.5E-55 T 25-04-2017 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC A4U88_RS05285 aace8e573a5ab4d46baed9bf1a8f8dba 159 PIRSF PIRSF006181 1 159 6.4E-56 T 25-04-2017 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC A4U88_RS05285 aace8e573a5ab4d46baed9bf1a8f8dba 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 6.9E-25 T 25-04-2017 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 SUPERFAMILY SSF46689 2 69 8.98E-17 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 8 21 3.1E-6 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 29 52 3.1E-6 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 20 51 - T 25-04-2017 IPR023772 DNA-binding HTH domain, TetR-type, conserved site A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 8 54 5.4E-14 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 Pfam PF13977 Bacterial transcriptional repressor 83 184 1.1E-8 T 25-04-2017 A4U88_RS05565 69f9d3af4aba6ee0d490041848b990be 187 Gene3D G3DSA:1.10.357.10 2 183 2.7E-26 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 Pfam PF00196 Bacterial regulatory proteins, luxR family 130 183 7.6E-11 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 130 144 3.7E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 160 3.7E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 172 3.7E-6 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 Gene3D G3DSA:1.10.10.10 127 185 3.0E-13 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 SUPERFAMILY SSF46894 122 185 1.33E-14 T 25-04-2017 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 A4U88_RS15475 2fa3bbf96c2c93dba144cdd380fea838 191 SMART SM00421 127 184 3.0E-10 T 25-04-2017 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 A4U88_RS03710 6391d3d7f6dbc8bbcce02511c80aac98 105 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 1.3E-16 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS03710 6391d3d7f6dbc8bbcce02511c80aac98 105 Gene3D G3DSA:3.40.50.270 1 104 3.4E-35 T 25-04-2017 A4U88_RS03710 6391d3d7f6dbc8bbcce02511c80aac98 105 SUPERFAMILY SSF52794 4 103 2.88E-31 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS14235 faae0b31345c0c562ce0742d88c05c53 378 Gene3D G3DSA:2.60.40.420 23 119 2.2E-7 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS14235 faae0b31345c0c562ce0742d88c05c53 378 SUPERFAMILY SSF49503 18 118 1.75E-7 T 25-04-2017 IPR008972 Cupredoxin A4U88_RS14235 faae0b31345c0c562ce0742d88c05c53 378 Pfam PF09375 Imelysin 139 371 5.3E-42 T 25-04-2017 A4U88_RS14235 faae0b31345c0c562ce0742d88c05c53 378 Pfam PF13473 Cupredoxin-like domain 15 118 4.0E-25 T 25-04-2017 IPR028096 EfeO-type cupredoxin-like domain A4U88_RS09810 dbd6584f909011c15378815b9656112e 286 Gene3D G3DSA:1.10.3720.10 2 272 1.0E-48 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09810 dbd6584f909011c15378815b9656112e 286 SUPERFAMILY SSF161098 6 275 5.33E-54 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS09810 dbd6584f909011c15378815b9656112e 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 282 2.8E-19 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS20605 38566d0e9e0fea8d46ef4a3c44e6041b 240 Pfam PF11101 Protein of unknown function (DUF2884) 25 239 6.2E-47 T 25-04-2017 IPR021307 Protein of unknown function DUF2884 A4U88_RS17330 7e5e02e6a037bb85e36a8da378a40644 307 Pfam PF00892 EamA-like transporter family 157 292 1.4E-18 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS17330 7e5e02e6a037bb85e36a8da378a40644 307 Pfam PF00892 EamA-like transporter family 14 143 1.0E-12 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS17330 7e5e02e6a037bb85e36a8da378a40644 307 SUPERFAMILY SSF103481 48 143 6.93E-12 T 25-04-2017 A4U88_RS17330 7e5e02e6a037bb85e36a8da378a40644 307 SUPERFAMILY SSF103481 197 292 8.11E-12 T 25-04-2017 A4U88_RS17080 45269bc1f7f899bd48e5f04854cff540 505 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 2.3E-144 T 25-04-2017 IPR002823 Protein of unknown function DUF112, transmembrane A4U88_RS14555 befe8f02b2bbab283098a2a5f65eaf33 354 Gene3D G3DSA:3.30.1330.60 149 261 4.4E-17 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS14555 befe8f02b2bbab283098a2a5f65eaf33 354 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 12 65 4.7E-20 T 25-04-2017 IPR025713 Motility protein B, N-terminal domain A4U88_RS14555 befe8f02b2bbab283098a2a5f65eaf33 354 SUPERFAMILY SSF103088 153 261 1.14E-18 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS14555 befe8f02b2bbab283098a2a5f65eaf33 354 Pfam PF00691 OmpA family 157 254 3.1E-13 T 25-04-2017 IPR006665 OmpA-like domain A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 358 366 - T 25-04-2017 IPR018120 Glycoside hydrolase family 1, active site A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 358 366 8.2E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 379 390 8.2E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 425 437 8.2E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 400 417 8.2E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 PRINTS PR00131 Glycosyl hydrolase family 1 signature 292 306 8.2E-16 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 Pfam PF00232 Glycosyl hydrolase family 1 3 460 1.8E-160 T 25-04-2017 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 SUPERFAMILY SSF51445 4 461 1.5E-163 T 25-04-2017 IPR017853 Glycoside hydrolase superfamily A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 9 23 - T 25-04-2017 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site A4U88_RS00365 1d72d9c9a893019bb61de5e5fef0984b 467 Gene3D G3DSA:3.20.20.80 3 464 1.2E-150 T 25-04-2017 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 SUPERFAMILY SSF53800 8 325 2.35E-100 T 25-04-2017 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 Gene3D G3DSA:3.40.50.1400 206 325 8.8E-33 T 25-04-2017 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 Gene3D G3DSA:3.40.50.1400 8 205 2.6E-67 T 25-04-2017 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 ProSitePatterns PS00534 Ferrochelatase signature. 194 212 - T 25-04-2017 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 TIGRFAM TIGR00109 hemH: ferrochelatase 6 324 5.0E-110 T 25-04-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 Hamap MF_00323 Ferrochelatase [hemH]. 9 325 36.807 T 25-04-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 A4U88_RS05215 c5d0d569d3d778a987347de200266d68 325 Pfam PF00762 Ferrochelatase 10 324 2.0E-108 T 25-04-2017 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 A4U88_RS01195 cce5cf344764052e50fd2bcb40d24fc5 246 SUPERFAMILY SSF52172 122 210 3.78E-8 T 25-04-2017 IPR011006 CheY-like superfamily A4U88_RS01195 cce5cf344764052e50fd2bcb40d24fc5 246 Gene3D G3DSA:3.40.50.2300 124 212 2.4E-10 T 25-04-2017 A4U88_RS01195 cce5cf344764052e50fd2bcb40d24fc5 246 Pfam PF08667 BetR domain 1 53 3.3E-8 T 25-04-2017 IPR013975 Transcription regulator BetR, N-terminal A4U88_RS01195 cce5cf344764052e50fd2bcb40d24fc5 246 Pfam PF00072 Response regulator receiver domain 126 208 2.5E-5 T 25-04-2017 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 A4U88_RS14605 3de026533c74baf93a5009fc8adc1947 129 Pfam PF12158 Protein of unknown function (DUF3592) 13 124 6.7E-6 T 25-04-2017 IPR021994 Protein of unknown function DUF3592 A4U88_RS13580 6b30516b6d3df7a2ce46fa76a028b17b 262 Pfam PF00950 ABC 3 transport family 2 257 9.7E-84 T 25-04-2017 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 A4U88_RS13580 6b30516b6d3df7a2ce46fa76a028b17b 262 SUPERFAMILY SSF81345 3 257 1.22E-39 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS13580 6b30516b6d3df7a2ce46fa76a028b17b 262 Gene3D G3DSA:1.10.3470.10 58 259 4.2E-11 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS00245 97fb0f287e0619073c0a1051358a5d53 91 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 3 90 6.6E-17 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS00245 97fb0f287e0619073c0a1051358a5d53 91 SUPERFAMILY SSF143011 1 88 1.22E-5 T 25-04-2017 A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 Gene3D G3DSA:3.10.20.30 2 73 1.3E-26 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 16 51 9.4E-5 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 SUPERFAMILY SSF54292 2 77 1.13E-21 T 25-04-2017 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 25-04-2017 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 SUPERFAMILY SSF47741 83 151 1.83E-25 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 Gene3D G3DSA:1.10.150.120 74 149 1.3E-27 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS12150 41df212813b0b7b2ebd74984d84a7a5f 157 Pfam PF01799 [2Fe-2S] binding domain 72 144 1.9E-24 T 25-04-2017 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 A4U88_RS12900 b234222f49c2ae8d468dae40c0ad0cda 205 Pfam PF10054 Predicted periplasmic lipoprotein (DUF2291) 9 203 2.6E-46 T 25-04-2017 IPR014582 Uncharacterised conserved protein UCP033535, periplasmic lipoprotein A4U88_RS12900 b234222f49c2ae8d468dae40c0ad0cda 205 SUPERFAMILY SSF141318 80 203 1.83E-12 T 25-04-2017 A4U88_RS20555 345e09ae45361f919fa0fc5b16f79a6a 187 Gene3D G3DSA:3.40.1740.10 131 177 3.3E-36 T 25-04-2017 A4U88_RS20555 345e09ae45361f919fa0fc5b16f79a6a 187 Gene3D G3DSA:3.40.1740.10 2 40 3.3E-36 T 25-04-2017 A4U88_RS20555 345e09ae45361f919fa0fc5b16f79a6a 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.502 T 25-04-2017 IPR003774 Protein of unknown function UPF0301 A4U88_RS20555 345e09ae45361f919fa0fc5b16f79a6a 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 2.3E-49 T 25-04-2017 IPR003774 Protein of unknown function UPF0301 A4U88_RS20555 345e09ae45361f919fa0fc5b16f79a6a 187 SUPERFAMILY SSF143456 1 187 1.96E-66 T 25-04-2017 A4U88_RS20555 345e09ae45361f919fa0fc5b16f79a6a 187 Gene3D G3DSA:3.30.70.1300 41 130 2.1E-25 T 25-04-2017 A4U88_RS08695 4a5f1cbf8f19cee5c30d254625bd16a5 361 SUPERFAMILY SSF111369 57 269 1.05E-37 T 25-04-2017 A4U88_RS08695 4a5f1cbf8f19cee5c30d254625bd16a5 361 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 345 4.0E-72 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS08695 4a5f1cbf8f19cee5c30d254625bd16a5 361 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 264 2.1E-28 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS08695 4a5f1cbf8f19cee5c30d254625bd16a5 361 Gene3D G3DSA:2.40.50.100 159 192 3.9E-18 T 25-04-2017 A4U88_RS08695 4a5f1cbf8f19cee5c30d254625bd16a5 361 Gene3D G3DSA:2.40.50.100 65 98 3.9E-18 T 25-04-2017 A4U88_RS18875 a84b1a898d2d63ea41dc3011d8adb25e 112 Pfam PF09400 Protein of unknown function (DUF2002) 1 111 1.7E-58 T 25-04-2017 IPR018994 Protein of unknown function DUF2002 A4U88_RS18875 a84b1a898d2d63ea41dc3011d8adb25e 112 SUPERFAMILY SSF159894 1 111 1.1E-54 T 25-04-2017 A4U88_RS04650 4112c6d92822872b35f899973d940853 188 SUPERFAMILY SSF54621 3 174 1.31E-73 T 25-04-2017 IPR010495 Haem-binding HasA A4U88_RS04650 4112c6d92822872b35f899973d940853 188 Gene3D G3DSA:3.30.1500.10 1 177 2.1E-64 T 25-04-2017 IPR010495 Haem-binding HasA A4U88_RS04650 4112c6d92822872b35f899973d940853 188 PIRSF PIRSF019876 1 188 5.8E-80 T 25-04-2017 IPR010495 Haem-binding HasA A4U88_RS04650 4112c6d92822872b35f899973d940853 188 Pfam PF06438 Heme-binding protein A (HasA) 1 179 1.7E-52 T 25-04-2017 IPR010495 Haem-binding HasA A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 7.4E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 7.4E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.4E-12 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 242 4.0E-68 T 25-04-2017 A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 Gene3D G3DSA:3.40.50.720 1 243 2.8E-83 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 SUPERFAMILY SSF51735 4 243 2.48E-79 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 7.3E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 7.3E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 7.3E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.3E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 7.3E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS10050 e4fbbec61a31700f9503cc9392543bc4 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 7.3E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS23135 3b87a5c1f022cedb5051b64dbf90f1a9 145 Pfam PF00582 Universal stress protein family 3 138 1.3E-20 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS23135 3b87a5c1f022cedb5051b64dbf90f1a9 145 PIRSF PIRSF006276 1 141 6.2E-54 T 25-04-2017 IPR006015 Universal stress protein A A4U88_RS23135 3b87a5c1f022cedb5051b64dbf90f1a9 145 Gene3D G3DSA:3.40.50.620 3 139 2.7E-31 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS23135 3b87a5c1f022cedb5051b64dbf90f1a9 145 SUPERFAMILY SSF52402 3 139 1.0E-31 T 25-04-2017 A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 262 3.0E-60 T 25-04-2017 A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.8E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 5.8E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.8E-11 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 Gene3D G3DSA:3.40.50.720 1 264 2.9E-83 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 187 0.0021 T 25-04-2017 A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 SUPERFAMILY SSF51735 7 264 1.81E-78 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.4E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 226 246 3.4E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 3.4E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.4E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 3.4E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS12880 acae3d7f0a43f5df43521939bc6eb2f5 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 3.4E-43 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS11215 1e06c380e96afe2ee134856d8bd2e2a0 108 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 2 106 22.351 T 25-04-2017 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 A4U88_RS11215 1e06c380e96afe2ee134856d8bd2e2a0 108 SUPERFAMILY SSF103481 8 105 7.98E-5 T 25-04-2017 A4U88_RS11215 1e06c380e96afe2ee134856d8bd2e2a0 108 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 1 107 1.5E-42 T 25-04-2017 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 A4U88_RS07035 d932ed0defa93dcc996dfc41b0f7fed9 217 Gene3D G3DSA:1.10.10.10 19 115 5.4E-8 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07035 d932ed0defa93dcc996dfc41b0f7fed9 217 SUPERFAMILY SSF46785 18 197 1.36E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15125 604ed42ff5f10fbd813a4cd8d8545f65 199 Pfam PF09684 Phage tail protein (Tail_P2_I) 5 140 1.7E-47 T 25-04-2017 IPR006521 Tail protein I A4U88_RS15125 604ed42ff5f10fbd813a4cd8d8545f65 199 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 5 141 1.9E-51 T 25-04-2017 IPR006521 Tail protein I A4U88_RS12620 cdeedd2db186bff6be5d9ed0dd4f7cc7 110 SUPERFAMILY SSF103481 6 105 2.09E-20 T 25-04-2017 A4U88_RS12620 cdeedd2db186bff6be5d9ed0dd4f7cc7 110 Pfam PF00893 Small Multidrug Resistance protein 4 94 1.4E-27 T 25-04-2017 IPR000390 Small multidrug resistance protein family GO:0016021 A4U88_RS07425 4acc06abede051d239401ef30ac71c5a 227 SMART SM00418 12 91 3.8E-17 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS07425 4acc06abede051d239401ef30ac71c5a 227 Pfam PF01022 Bacterial regulatory protein, arsR family 19 64 1.4E-10 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS07425 4acc06abede051d239401ef30ac71c5a 227 SUPERFAMILY SSF46785 2 91 1.42E-19 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07425 4acc06abede051d239401ef30ac71c5a 227 Gene3D G3DSA:1.10.10.10 7 93 9.9E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS15610 9fdbaf21e00d38e90f96d4d4df417911 266 Hamap MF_01593 Protein MtfA [mtfA]. 1 266 59.744 T 25-04-2017 IPR010384 MtfA family A4U88_RS15610 9fdbaf21e00d38e90f96d4d4df417911 266 SUPERFAMILY SSF55486 36 248 9.52E-41 T 25-04-2017 A4U88_RS15610 9fdbaf21e00d38e90f96d4d4df417911 266 Gene3D G3DSA:3.40.390.10 33 247 7.2E-25 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS15610 9fdbaf21e00d38e90f96d4d4df417911 266 Pfam PF06167 Glucose-regulated metallo-peptidase M90 12 246 2.2E-65 T 25-04-2017 IPR010384 MtfA family A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 Gene3D G3DSA:1.10.10.60 218 268 9.5E-15 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 249 265 2.2E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 234 249 2.2E-5 T 25-04-2017 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 SMART SM00342 183 265 1.2E-18 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 Pfam PF12833 Helix-turn-helix domain 190 265 1.8E-12 T 25-04-2017 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 219 261 - T 25-04-2017 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 A4U88_RS14320 554c2927e5bdfcc3221e250d84aefeff 286 SUPERFAMILY SSF46689 218 268 2.87E-11 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 Pfam PF00529 HlyD membrane-fusion protein of T1SS 35 399 2.8E-19 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 Gene3D G3DSA:2.40.50.100 292 327 3.9E-18 T 25-04-2017 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 Gene3D G3DSA:2.40.50.100 64 96 3.9E-18 T 25-04-2017 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 364 387 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 74 94 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 307 328 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 32 55 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 340 364 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 1.4E-63 T 25-04-2017 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 SUPERFAMILY SSF111369 235 346 8.11E-6 T 25-04-2017 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 21 443 1.2E-116 T 25-04-2017 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 SUPERFAMILY SSF111369 62 127 3.53E-6 T 25-04-2017 A4U88_RS07745 1c803e0e3429328876eef3c5889beaf4 443 ProSitePatterns PS00543 HlyD family secretion proteins signature. 407 429 - T 25-04-2017 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 A4U88_RS11870 967422a1224710d9df56e66afaf72103 372 SUPERFAMILY SSF103473 2 370 2.75E-45 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11870 967422a1224710d9df56e66afaf72103 372 Gene3D G3DSA:1.20.1250.20 2 169 6.2E-22 T 25-04-2017 A4U88_RS11870 967422a1224710d9df56e66afaf72103 372 Gene3D G3DSA:1.20.1250.20 185 370 7.4E-15 T 25-04-2017 A4U88_RS11870 967422a1224710d9df56e66afaf72103 372 Pfam PF07690 Major Facilitator Superfamily 2 200 1.1E-18 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18770 6851b5d86993ba23093b073af0b5af8f 217 Pfam PF11769 Protein of unknown function (DUF3313) 14 211 3.8E-51 T 25-04-2017 IPR021747 Protein of unknown function DUF3313 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 25-04-2017 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 25-04-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 6.2E-39 T 25-04-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 6.2E-39 T 25-04-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 6.2E-39 T 25-04-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 6.2E-39 T 25-04-2017 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 25-04-2017 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.5E-20 T 25-04-2017 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 A4U88_RS01140 5130c1ece04a65479150b52a49c3c8f2 127 Gene3D G3DSA:1.20.5.1030 64 123 3.1E-25 T 25-04-2017 A4U88_RS16975 949d9600ddfbae317a1aef6eaffd9202 257 Pfam PF00005 ABC transporter 21 181 1.0E-33 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS16975 949d9600ddfbae317a1aef6eaffd9202 257 SMART SM00382 30 229 6.5E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS16975 949d9600ddfbae317a1aef6eaffd9202 257 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS16975 949d9600ddfbae317a1aef6eaffd9202 257 SUPERFAMILY SSF52540 6 251 4.02E-74 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16975 949d9600ddfbae317a1aef6eaffd9202 257 Gene3D G3DSA:3.40.50.300 6 252 1.8E-80 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS16975 949d9600ddfbae317a1aef6eaffd9202 257 PIRSF PIRSF039085 2 257 1.2E-119 T 25-04-2017 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 A4U88_RS02650 a8e2ae4f3a4f5a8913ecf1d24887d4fe 196 Pfam PF11354 Protein of unknown function (DUF3156) 30 190 2.5E-62 T 25-04-2017 IPR021500 Protein of unknown function DUF3156 A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 188 1.3E-4 T 25-04-2017 A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 SUPERFAMILY SSF51735 2 248 1.35E-78 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 4.8E-9 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.8E-9 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.8E-9 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 Gene3D G3DSA:3.40.50.720 2 248 8.6E-81 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 246 6.8E-66 T 25-04-2017 A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 2.8E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.8E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.8E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 2.8E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 2.8E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.8E-38 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS03700 62cef08109ee8f07637e297458a491eb 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 25-04-2017 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 A4U88_RS13575 afca0e01f3342deb8b9979a0543a4345 252 SMART SM00382 29 199 7.7E-10 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS13575 afca0e01f3342deb8b9979a0543a4345 252 Pfam PF00005 ABC transporter 20 149 8.1E-30 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS13575 afca0e01f3342deb8b9979a0543a4345 252 SUPERFAMILY SSF52540 3 215 1.49E-53 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS13575 afca0e01f3342deb8b9979a0543a4345 252 Gene3D G3DSA:3.40.50.300 3 210 1.5E-55 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08390 706cfab068ad04a0ed711490eab4e3c9 261 SUPERFAMILY SSF53335 4 255 7.52E-37 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08390 706cfab068ad04a0ed711490eab4e3c9 261 Gene3D G3DSA:3.40.50.150 37 255 2.5E-30 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS08390 706cfab068ad04a0ed711490eab4e3c9 261 Pfam PF13847 Methyltransferase domain 44 150 2.4E-18 T 25-04-2017 IPR025714 Methyltransferase domain A4U88_RS08390 706cfab068ad04a0ed711490eab4e3c9 261 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 255 41.359 T 25-04-2017 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 Gene3D G3DSA:3.40.190.10 92 179 1.1E-9 T 25-04-2017 A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 SUPERFAMILY SSF53850 89 295 1.99E-31 T 25-04-2017 A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 Gene3D G3DSA:1.10.10.10 6 84 3.8E-20 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 Pfam PF03466 LysR substrate binding domain 88 293 1.3E-28 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 SUPERFAMILY SSF46785 6 88 9.07E-17 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.6E-16 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS06455 c3311d4ed668beb132ec9d91c0d57951 297 Gene3D G3DSA:3.40.190.10 180 256 8.5E-11 T 25-04-2017 A4U88_RS10695 3f816f54181ff5fc12bd71b1fd05ba25 138 Gene3D G3DSA:3.90.1010.10 4 137 1.7E-53 T 25-04-2017 A4U88_RS10695 3f816f54181ff5fc12bd71b1fd05ba25 138 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 42.454 T 25-04-2017 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 A4U88_RS10695 3f816f54181ff5fc12bd71b1fd05ba25 138 Pfam PF02657 Fe-S metabolism associated domain 12 132 1.5E-44 T 25-04-2017 IPR003808 Fe-S metabolism associated domain, SufE-like A4U88_RS10695 3f816f54181ff5fc12bd71b1fd05ba25 138 SUPERFAMILY SSF82649 4 136 6.28E-46 T 25-04-2017 A4U88_RS11950 ad6680814659879d9597949116fb16dc 202 Pfam PF13649 Methyltransferase domain 48 136 2.1E-14 T 25-04-2017 A4U88_RS11950 ad6680814659879d9597949116fb16dc 202 SUPERFAMILY SSF53335 11 184 7.67E-33 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS11950 ad6680814659879d9597949116fb16dc 202 Gene3D G3DSA:3.40.50.150 8 182 1.5E-33 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13895 8195f0a1de75bf9353bfc0e515e9d248 117 Pfam PF06993 Protein of unknown function (DUF1304) 11 114 1.0E-39 T 25-04-2017 IPR009732 Protein of unknown function DUF1304 A4U88_RS20680 04c8b4eb742ce19877cef054a9b1157f 136 Pfam PF00583 Acetyltransferase (GNAT) family 43 115 3.9E-12 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS20680 04c8b4eb742ce19877cef054a9b1157f 136 Gene3D G3DSA:3.40.630.30 38 136 2.8E-27 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS20680 04c8b4eb742ce19877cef054a9b1157f 136 SUPERFAMILY SSF55729 33 136 1.64E-26 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 PIRSF PIRSF002131 1 129 4.8E-53 T 25-04-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 3.0E-55 T 25-04-2017 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 Gene3D G3DSA:3.30.420.80 8 129 1.1E-54 T 25-04-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.669 T 25-04-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 Pfam PF00411 Ribosomal protein S11 19 128 1.9E-54 T 25-04-2017 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 SUPERFAMILY SSF53137 14 129 6.08E-48 T 25-04-2017 A4U88_RS22230 3cd53a18d4ef769d1bf46a5701a1a210 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 25-04-2017 IPR018102 Ribosomal S11, conserved site A4U88_RS16615 2e06f2ed03368bd9883c0e139769feb4 109 Pfam PF04355 SmpA / OmlA family 29 96 6.8E-16 T 25-04-2017 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 A4U88_RS23440 f7ff7c97f3e27ac8b131092ab041e34c 123 Pfam PF07226 Protein of unknown function (DUF1422) 3 114 4.6E-57 T 25-04-2017 IPR009867 Protein of unknown function DUF1422 A4U88_RS23440 f7ff7c97f3e27ac8b131092ab041e34c 123 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 2 114 5.0E-47 T 25-04-2017 IPR009867 Protein of unknown function DUF1422 A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 SMART SM00387 312 421 4.7E-23 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 418 8.6E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 362 8.6E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 PRINTS PR00344 Bacterial sensor protein C-terminal signature 381 399 8.6E-11 T 25-04-2017 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 SUPERFAMILY SSF55874 259 419 1.26E-32 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 Gene3D G3DSA:3.30.565.10 248 420 4.6E-32 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS01190 ccdfd2b24a98dcc98f2d2f6e7a0faded 424 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 419 2.8E-20 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS15635 f441a53f8abf8943456911bc04913956 340 SUPERFAMILY SSF51679 7 333 5.89E-55 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15635 f441a53f8abf8943456911bc04913956 340 Gene3D G3DSA:3.20.20.30 9 339 1.9E-59 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS15635 f441a53f8abf8943456911bc04913956 340 Pfam PF00296 Luciferase-like monooxygenase 8 250 2.3E-24 T 25-04-2017 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 A4U88_RS18230 46e51814cb746afd248bcb4b1d6b2bc5 87 Pfam PF17090 Uncharacterised protein family 22 85 9.2E-12 T 25-04-2017 IPR031381 Uncharacterised protein YtcA A4U88_RS11075 987bc4183b2180c0259c63f197324734 378 ProSitePatterns PS00336 Beta-lactamase class-C active site. 76 83 - T 25-04-2017 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 A4U88_RS11075 987bc4183b2180c0259c63f197324734 378 Pfam PF00144 Beta-lactamase 28 375 2.2E-81 T 25-04-2017 IPR001466 Beta-lactamase-related A4U88_RS11075 987bc4183b2180c0259c63f197324734 378 Gene3D G3DSA:3.40.710.10 24 375 8.1E-84 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS11075 987bc4183b2180c0259c63f197324734 378 SUPERFAMILY SSF56601 21 375 2.89E-97 T 25-04-2017 IPR012338 Beta-lactamase/transpeptidase-like A4U88_RS05925 17a0e5c93743dad27197613f23c086de 239 Pfam PF06149 Protein of unknown function (DUF969) 7 224 2.2E-90 T 25-04-2017 IPR010374 Protein of unknown function DUF969 A4U88_RS24095 95e1ebad241a93d19f393baae8a70181 127 Pfam PF03899 ATP synthase I chain 13 109 1.3E-18 T 25-04-2017 IPR005598 ATP synthase protein I A4U88_RS17450 47f74e21b98cbff46df177844c785fce 329 SUPERFAMILY SSF51430 13 327 2.49E-89 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS17450 47f74e21b98cbff46df177844c785fce 329 Gene3D G3DSA:3.20.20.100 13 327 1.8E-85 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS17450 47f74e21b98cbff46df177844c785fce 329 Pfam PF00248 Aldo/keto reductase family 28 327 8.3E-69 T 25-04-2017 IPR023210 NADP-dependent oxidoreductase domain A4U88_RS05805 8c6e807c2b9ce20c05904ee12ee28de2 104 Pfam PF13982 YbfN-like lipoprotein 17 103 5.8E-47 T 25-04-2017 IPR025727 YbfN-like lipoprotein A4U88_RS13730 1df4fe5b9bb3808ece1ca1bb7131f422 102 Pfam PF04266 ASCH domain 6 98 6.5E-16 T 25-04-2017 IPR007374 ASCH domain A4U88_RS13730 1df4fe5b9bb3808ece1ca1bb7131f422 102 Gene3D G3DSA:2.30.130.30 2 99 1.5E-45 T 25-04-2017 A4U88_RS13730 1df4fe5b9bb3808ece1ca1bb7131f422 102 PIRSF PIRSF029143 1 102 3.7E-48 T 25-04-2017 IPR008314 Uncharacterised conserved protein UCP029143 A4U88_RS13730 1df4fe5b9bb3808ece1ca1bb7131f422 102 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 1 102 31.883 T 25-04-2017 IPR008314 Uncharacterised conserved protein UCP029143 A4U88_RS13730 1df4fe5b9bb3808ece1ca1bb7131f422 102 SUPERFAMILY SSF88697 2 99 1.99E-34 T 25-04-2017 IPR015947 PUA-like domain A4U88_RS13730 1df4fe5b9bb3808ece1ca1bb7131f422 102 SMART SM01022 5 101 2.0E-28 T 25-04-2017 IPR007374 ASCH domain A4U88_RS01215 bfdb553b3caa03a62994196ea92bccf3 249 SUPERFAMILY SSF69572 2 246 9.68E-77 T 25-04-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 A4U88_RS01215 bfdb553b3caa03a62994196ea92bccf3 249 Pfam PF00899 ThiF family 10 242 3.8E-60 T 25-04-2017 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 A4U88_RS01215 bfdb553b3caa03a62994196ea92bccf3 249 Gene3D G3DSA:3.40.50.720 3 246 2.2E-71 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS00090 c78a67fe87e38389eeaafb38f01c16b9 422 Gene3D G3DSA:1.20.1250.20 225 414 5.3E-31 T 25-04-2017 A4U88_RS00090 c78a67fe87e38389eeaafb38f01c16b9 422 SUPERFAMILY SSF103473 7 413 2.22E-86 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00090 c78a67fe87e38389eeaafb38f01c16b9 422 Gene3D G3DSA:1.20.1250.20 11 205 9.3E-43 T 25-04-2017 A4U88_RS00090 c78a67fe87e38389eeaafb38f01c16b9 422 Pfam PF07690 Major Facilitator Superfamily 18 313 3.8E-50 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS18485 96155d8de6d493f0863cca20d00b97fc 381 PIRSF PIRSF004925 1 381 3.8E-112 T 25-04-2017 IPR026032 Probable 3-phenylpropionic acid transporter A4U88_RS18485 96155d8de6d493f0863cca20d00b97fc 381 SUPERFAMILY SSF103473 7 372 2.75E-37 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS18485 96155d8de6d493f0863cca20d00b97fc 381 Gene3D G3DSA:1.20.1250.20 8 179 3.8E-11 T 25-04-2017 A4U88_RS18485 96155d8de6d493f0863cca20d00b97fc 381 Gene3D G3DSA:1.20.1250.20 195 371 5.1E-24 T 25-04-2017 A4U88_RS18485 96155d8de6d493f0863cca20d00b97fc 381 Pfam PF12832 MFS_1 like family 8 357 2.7E-49 T 25-04-2017 IPR024989 Major facilitator superfamily associated domain A4U88_RS22150 44343c98f49d94a545954ef31d549e09 189 SUPERFAMILY SSF55821 8 185 9.77E-56 T 25-04-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain A4U88_RS22150 44343c98f49d94a545954ef31d549e09 189 Gene3D G3DSA:3.90.870.10 8 189 3.1E-54 T 25-04-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain A4U88_RS22150 44343c98f49d94a545954ef31d549e09 189 Pfam PF01300 Telomere recombination 15 186 9.5E-43 T 25-04-2017 IPR006070 YrdC-like domain GO:0003725 A4U88_RS22150 44343c98f49d94a545954ef31d549e09 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 6 187 41.111 T 25-04-2017 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 SUPERFAMILY SSF52540 13 241 6.13E-56 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 SUPERFAMILY SSF52540 280 495 5.33E-42 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 SMART SM00382 289 473 0.56 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 SMART SM00382 39 229 6.2E-14 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 Pfam PF00005 ABC transporter 281 435 8.1E-22 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 Pfam PF00005 ABC transporter 30 181 1.8E-27 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 Gene3D G3DSA:3.40.50.300 281 499 1.3E-44 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 Gene3D G3DSA:3.40.50.300 11 246 7.6E-62 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS19935 dee9e17b02bbc30118d94ed88ecc2a6f 505 ProSitePatterns PS00211 ABC transporters family signature. 408 422 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22980 60630d83f1cbb2373973419b42725731 176 Pfam PF00419 Fimbrial protein 32 175 1.0E-17 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS22980 60630d83f1cbb2373973419b42725731 176 SUPERFAMILY SSF49401 30 175 2.68E-39 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS22980 60630d83f1cbb2373973419b42725731 176 Gene3D G3DSA:2.60.40.1090 29 175 1.2E-47 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS02755 45e80ce3a527c3df20ca1edb17c1ba2d 287 Gene3D G3DSA:3.20.20.140 1 277 2.6E-72 T 25-04-2017 A4U88_RS02755 45e80ce3a527c3df20ca1edb17c1ba2d 287 Pfam PF04909 Amidohydrolase 4 276 2.2E-30 T 25-04-2017 IPR006680 Amidohydrolase-related GO:0016787 A4U88_RS02755 45e80ce3a527c3df20ca1edb17c1ba2d 287 SUPERFAMILY SSF51556 2 276 4.76E-63 T 25-04-2017 IPR032466 Metal-dependent hydrolase A4U88_RS20710 145067ec6c0ed20fddff2ce36964cfd8 715 Pfam PF05506 Domain of unknown function (DUF756) 530 614 1.1E-20 T 25-04-2017 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 A4U88_RS20710 145067ec6c0ed20fddff2ce36964cfd8 715 Pfam PF05506 Domain of unknown function (DUF756) 622 699 6.7E-11 T 25-04-2017 IPR008475 Bacterial phospholipase C, C-terminal domain GO:0004629|GO:0016042 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 A4U88_RS20710 145067ec6c0ed20fddff2ce36964cfd8 715 TIGRFAM TIGR03396 PC_PLC: phospholipase C, phosphocholine-specific 5 713 1.4E-281 T 25-04-2017 IPR017767 Bacterial phospholipase C, phosphocholine-specific GO:0034480 KEGG: 00562+3.1.4.3|KEGG: 00564+3.1.4.3|KEGG: 00565+3.1.4.3 A4U88_RS20710 145067ec6c0ed20fddff2ce36964cfd8 715 Pfam PF04185 Phosphoesterase family 44 457 1.1E-107 T 25-04-2017 IPR007312 Phosphoesterase GO:0016788 A4U88_RS06490 b1441b4757f8fd787186c99a41715960 134 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 3 126 8.4E-22 T 25-04-2017 IPR028973 PhnB-like A4U88_RS06490 b1441b4757f8fd787186c99a41715960 134 SUPERFAMILY SSF54593 1 128 5.83E-28 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS06490 b1441b4757f8fd787186c99a41715960 134 PIRSF PIRSF021700 1 132 7.0E-22 T 25-04-2017 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase A4U88_RS06490 b1441b4757f8fd787186c99a41715960 134 Gene3D G3DSA:3.10.180.10 1 129 2.2E-37 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS22765 740fd504cfe88095eccb2603d1245151 79 SUPERFAMILY SSF46785 1 74 4.76E-21 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS22765 740fd504cfe88095eccb2603d1245151 79 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 1 78 25.407 T 25-04-2017 IPR023732 Probable [Fe-S]-dependent transcriptional repressor A4U88_RS22765 740fd504cfe88095eccb2603d1245151 79 Pfam PF09012 FeoC like transcriptional regulator 4 75 9.3E-19 T 25-04-2017 IPR015102 Transcriptional regulator HTH-type, FeoC A4U88_RS22735 f130c815ae4f610b1dfbc4c94c0a578b 101 Pfam PF13591 MerR HTH family regulatory protein 9 92 5.4E-24 T 25-04-2017 A4U88_RS00820 68f826d414a3c7a3ab88e796d54b1f06 90 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 8.1E-29 T 25-04-2017 IPR009525 Protein of unknown function DUF1145 A4U88_RS08175 cb5dc1a9e04df881d2d9532366cc1998 298 Pfam PF03956 Membrane protein of unknown function (DUF340) 113 297 2.8E-58 T 25-04-2017 IPR005642 Lysine exporter LysO A4U88_RS08175 cb5dc1a9e04df881d2d9532366cc1998 298 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 152 284 3.0E-51 T 25-04-2017 IPR005642 Lysine exporter LysO A4U88_RS23885 cc7543e1f7e6bdd3ab2fa65242f9c7d0 466 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 376 396 - T 25-04-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 A4U88_RS23885 cc7543e1f7e6bdd3ab2fa65242f9c7d0 466 Pfam PF00860 Permease family 35 427 1.0E-107 T 25-04-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS23885 cc7543e1f7e6bdd3ab2fa65242f9c7d0 466 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 30 458 6.6E-138 T 25-04-2017 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 A4U88_RS03205 668b1a0614a6bd90521211945791279e 216 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 57 71 - T 25-04-2017 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03205 668b1a0614a6bd90521211945791279e 216 Pfam PF00849 RNA pseudouridylate synthase 19 166 3.3E-27 T 25-04-2017 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS03205 668b1a0614a6bd90521211945791279e 216 SUPERFAMILY SSF55120 6 213 8.96E-62 T 25-04-2017 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 A4U88_RS21190 7e9c45abff4a195ae6d7ec2c07b23d8d 101 Gene3D G3DSA:1.20.120.20 6 67 8.1E-4 T 25-04-2017 A4U88_RS21190 7e9c45abff4a195ae6d7ec2c07b23d8d 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 5.8E-33 T 25-04-2017 IPR010279 Protein of unknown function DUF883, ElaB A4U88_RS04745 236d10d50814cfb551ffa4c347090fed 438 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 2.2E-155 T 25-04-2017 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 A4U88_RS04745 236d10d50814cfb551ffa4c347090fed 438 Pfam PF05525 Branched-chain amino acid transport protein 7 428 1.5E-151 T 25-04-2017 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 A4U88_RS07330 460f1b9c4d9a678c1d4dbe81ac093faf 203 Pfam PF01292 Prokaryotic cytochrome b561 13 202 2.9E-25 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS07330 460f1b9c4d9a678c1d4dbe81ac093faf 203 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 16 39 4.1E-5 T 25-04-2017 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 A4U88_RS07330 460f1b9c4d9a678c1d4dbe81ac093faf 203 PRINTS PR00161 Nickel-dependent hydrogenase/B-type cytochrome signature 168 190 4.1E-5 T 25-04-2017 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit GO:0005506|GO:0006810|GO:0009055|GO:0016020 A4U88_RS07330 460f1b9c4d9a678c1d4dbe81ac093faf 203 Gene3D G3DSA:1.20.950.20 9 203 5.5E-47 T 25-04-2017 A4U88_RS07330 460f1b9c4d9a678c1d4dbe81ac093faf 203 SUPERFAMILY SSF81342 9 203 4.94E-35 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS15950 5b9ca7eac6e41b8e711e5127ec1f2434 350 Pfam PF03060 Nitronate monooxygenase 12 345 1.4E-83 T 25-04-2017 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 A4U88_RS15950 5b9ca7eac6e41b8e711e5127ec1f2434 350 SUPERFAMILY SSF51412 8 75 1.05E-59 T 25-04-2017 A4U88_RS15950 5b9ca7eac6e41b8e711e5127ec1f2434 350 SUPERFAMILY SSF51412 102 347 1.05E-59 T 25-04-2017 A4U88_RS15950 5b9ca7eac6e41b8e711e5127ec1f2434 350 Gene3D G3DSA:3.20.20.70 6 337 4.2E-68 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS09140 ba258c858a2a28136f453393a4a92e8d 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 4.0E-36 T 25-04-2017 IPR025730 Biofilm regulator BssS A4U88_RS09140 ba258c858a2a28136f453393a4a92e8d 84 Pfam PF13991 BssS protein family 11 80 1.3E-38 T 25-04-2017 IPR025730 Biofilm regulator BssS A4U88_RS10865 4b56ed415403e476bca7b51381f5c54d 154 Pfam PF05433 Glycine zipper 2TM domain 62 102 2.1E-7 T 25-04-2017 IPR008816 Glycine zipper 2TM domain GO:0019867 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 Gene3D G3DSA:1.20.1250.20 214 405 2.0E-30 T 25-04-2017 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 Gene3D G3DSA:1.20.1250.20 11 195 2.0E-40 T 25-04-2017 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 SUPERFAMILY SSF103473 9 404 8.28E-72 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 Pfam PF07690 Major Facilitator Superfamily 18 267 7.5E-37 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 PRINTS PR01035 Tetracycline resistance protein signature 23 39 1.1E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 PRINTS PR01035 Tetracycline resistance protein signature 346 369 1.1E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 PRINTS PR01035 Tetracycline resistance protein signature 142 164 1.1E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 PRINTS PR01035 Tetracycline resistance protein signature 311 331 1.1E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 PRINTS PR01035 Tetracycline resistance protein signature 85 109 1.1E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 PRINTS PR01035 Tetracycline resistance protein signature 112 133 1.1E-12 T 25-04-2017 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 A4U88_RS09080 465eda6e4eb9cf37b847ffda19775c14 412 Hamap MF_01528 Multidrug resistance protein MdtG [mdtG]. 1 404 46.321 T 25-04-2017 IPR023692 Multidrug resistance protein MdtG GO:0005215|GO:0005886 A4U88_RS16830 113cd53412419e5ae8fd41340bfc070e 185 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 5.7E-33 T 25-04-2017 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS11660 837a8e29df7320044c62b44ec3269812 262 Pfam PF01564 Spermine/spermidine synthase 76 200 1.1E-4 T 25-04-2017 A4U88_RS11660 837a8e29df7320044c62b44ec3269812 262 SUPERFAMILY SSF53335 16 237 5.57E-40 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS11660 837a8e29df7320044c62b44ec3269812 262 Gene3D G3DSA:3.40.50.150 18 238 1.5E-49 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13725 045cc9c10049880950fef12fb16edace 119 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 26 115 1.0E-25 T 25-04-2017 IPR025603 YebF/Colicin-M immunity protein A4U88_RS13725 045cc9c10049880950fef12fb16edace 119 Pfam PF13995 YebF-like protein 28 116 1.1E-37 T 25-04-2017 IPR025603 YebF/Colicin-M immunity protein A4U88_RS00095 c104d4beed58a72b4f719b0d81562874 321 Gene3D G3DSA:3.40.1190.20 9 319 4.8E-89 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS00095 c104d4beed58a72b4f719b0d81562874 321 Pfam PF00294 pfkB family carbohydrate kinase 15 315 1.1E-61 T 25-04-2017 IPR011611 Carbohydrate kinase PfkB A4U88_RS00095 c104d4beed58a72b4f719b0d81562874 321 SUPERFAMILY SSF53613 13 319 3.74E-82 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.1E-19 T 25-04-2017 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 Gene3D G3DSA:3.40.190.10 89 166 4.3E-11 T 25-04-2017 A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 Pfam PF03466 LysR substrate binding domain 89 291 1.9E-37 T 25-04-2017 IPR005119 LysR, substrate-binding A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 Gene3D G3DSA:3.40.190.10 167 254 2.4E-14 T 25-04-2017 A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 SUPERFAMILY SSF46785 4 109 5.06E-23 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 SUPERFAMILY SSF53850 90 295 6.92E-40 T 25-04-2017 A4U88_RS21555 dec6b6d7a2c24a891d0b840ff18e44fb 303 Gene3D G3DSA:1.10.10.10 3 88 1.4E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS10355 f01eb016d2d1e94b674b158cb69ad0b1 287 SUPERFAMILY SSF161098 15 278 3.46E-50 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10355 f01eb016d2d1e94b674b158cb69ad0b1 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 281 1.8E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10355 f01eb016d2d1e94b674b158cb69ad0b1 287 Gene3D G3DSA:1.10.3720.10 14 276 3.9E-46 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS10355 f01eb016d2d1e94b674b158cb69ad0b1 287 TIGRFAM TIGR03226 PhnU: 2-aminoethylphosphonate ABC transporter, permease protein 8 286 6.5E-126 T 25-04-2017 IPR017636 2-aminoethylphosphonate ABC transporter system, permease protein phnU GO:0016020|GO:0033223 A4U88_RS07145 823cc7745d1b0d538a0c89c7aa8442c2 618 Gene3D G3DSA:1.10.1370.10 149 264 7.8E-31 T 25-04-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 A4U88_RS07145 823cc7745d1b0d538a0c89c7aa8442c2 618 Gene3D G3DSA:1.10.1370.10 379 557 7.8E-31 T 25-04-2017 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 A4U88_RS07145 823cc7745d1b0d538a0c89c7aa8442c2 618 Gene3D G3DSA:3.40.390.10 285 378 6.5E-9 T 25-04-2017 IPR024079 Metallopeptidase, catalytic domain GO:0008237 A4U88_RS07145 823cc7745d1b0d538a0c89c7aa8442c2 618 Pfam PF01432 Peptidase family M3 149 552 8.8E-22 T 25-04-2017 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 A4U88_RS07145 823cc7745d1b0d538a0c89c7aa8442c2 618 SUPERFAMILY SSF55486 90 552 1.22E-70 T 25-04-2017 A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 Gene3D G3DSA:3.30.230.10 339 539 1.3E-31 T 25-04-2017 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 490 508 5.0E-10 T 25-04-2017 A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 460 479 5.0E-10 T 25-04-2017 A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 430 449 5.0E-10 T 25-04-2017 A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 347 363 5.0E-10 T 25-04-2017 A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 SUPERFAMILY SSF54211 347 538 1.21E-33 T 25-04-2017 IPR020568 Ribosomal protein S5 domain 2-type fold A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 433 529 1.7E-9 T 25-04-2017 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 A4U88_RS08545 7fb3a8239538793ca74e6e2a2f1ea14d 582 Pfam PF13654 AAA domain 139 321 8.5E-23 T 25-04-2017 A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 Pfam PF02682 Allophanate hydrolase subunit 1 1 194 3.2E-71 T 25-04-2017 IPR003833 Carboxyltransferase domain, subdomain C and D A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 Gene3D G3DSA:2.40.100.10 80 205 9.8E-53 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 SUPERFAMILY SSF160467 1 84 5.23E-10 T 25-04-2017 A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 SUPERFAMILY SSF50891 80 206 1.59E-45 T 25-04-2017 IPR029000 Cyclophilin-like domain A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 1 203 5.3E-88 T 25-04-2017 IPR010016 KipI family A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 SMART SM00796 1 194 4.0E-94 T 25-04-2017 IPR003833 Carboxyltransferase domain, subdomain C and D A4U88_RS05910 e5367c93c8dcc69c5804916af858c4a7 210 Gene3D G3DSA:3.30.1360.40 1 69 8.7E-8 T 25-04-2017 IPR024946 Arginine repressor C-terminal-like domain A4U88_RS00035 a8d47eef77d8c8617aafb24c3518695d 322 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 43 56 - T 25-04-2017 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 A4U88_RS00035 a8d47eef77d8c8617aafb24c3518695d 322 Gene3D G3DSA:3.40.50.1100 70 317 1.5E-68 T 25-04-2017 A4U88_RS00035 a8d47eef77d8c8617aafb24c3518695d 322 SUPERFAMILY SSF53686 6 308 3.14E-91 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS00035 a8d47eef77d8c8617aafb24c3518695d 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 305 2.4E-80 T 25-04-2017 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme A4U88_RS05090 0fcbc3f18623474f1430ff191ddce9d3 122 Pfam PF10757 Biofilm formation regulator YbaJ 1 118 1.8E-63 T 25-04-2017 IPR019693 Biofilm formation regulator YbaJ A4U88_RS22510 1eec5a9c9bf74ebf78a582582790c5eb 692 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 672 3.7E-188 T 25-04-2017 IPR010020 Integral membrane protein, YccS/YhfK A4U88_RS22510 1eec5a9c9bf74ebf78a582582790c5eb 692 Pfam PF12805 FUSC-like inner membrane protein yccS 63 330 1.7E-68 T 25-04-2017 IPR032692 Integral membrane protein YccS, N-terminal A4U88_RS22510 1eec5a9c9bf74ebf78a582582790c5eb 692 Pfam PF13515 Fusaric acid resistance protein-like 378 497 1.1E-19 T 25-04-2017 A4U88_RS19845 ea3b2ff16b3fa7fa3d897199d6cf9a60 577 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 24 573 8.2E-163 T 25-04-2017 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 A4U88_RS19845 ea3b2ff16b3fa7fa3d897199d6cf9a60 577 Pfam PF02272 DHHA1 domain 382 449 3.4E-16 T 25-04-2017 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 A4U88_RS19845 ea3b2ff16b3fa7fa3d897199d6cf9a60 577 SUPERFAMILY SSF64182 48 466 7.33E-119 T 25-04-2017 A4U88_RS19845 ea3b2ff16b3fa7fa3d897199d6cf9a60 577 Pfam PF01368 DHH family 74 207 6.9E-11 T 25-04-2017 IPR001667 DDH domain A4U88_RS16010 11e636d333b11b7bcdc041ee2cb0f97a 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 288 2.5E-52 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS19930 5c72c6a56d73124f0e8053e8e58ff285 328 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 311 4.2E-38 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS18725 482d9f3288dd4aa8cf5bcca6d32a697d 112 Pfam PF04355 SmpA / OmlA family 35 104 1.7E-27 T 25-04-2017 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 A4U88_RS18725 482d9f3288dd4aa8cf5bcca6d32a697d 112 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 32.992 T 25-04-2017 IPR026592 Outer membrane protein assembly factor BamE A4U88_RS20075 b27ba3a1e5ef14b2891909fddd9f6852 360 Pfam PF02653 Branched-chain amino acid transport system / permease component 60 323 6.4E-30 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 25-04-2017 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 304 2.2E-102 T 25-04-2017 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 Gene3D G3DSA:3.40.50.150 108 290 4.1E-50 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 53.62 T 25-04-2017 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 PIRSF PIRSF037167 2 307 3.5E-148 T 25-04-2017 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 SUPERFAMILY SSF53335 15 294 1.25E-50 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 Pfam PF05175 Methyltransferase small domain 132 215 3.4E-15 T 25-04-2017 IPR007848 Methyltransferase small domain GO:0008168 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 Gene3D G3DSA:1.10.8.10 15 106 1.2E-6 T 25-04-2017 A4U88_RS17195 e3dc4abddfcc6f146c64464914edfe88 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 5.2E-137 T 25-04-2017 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 A4U88_RS07710 78cf3189c8569069493365eb62cc7f17 84 SUPERFAMILY SSF53756 1 47 5.65E-5 T 25-04-2017 A4U88_RS04270 d53940a08b85ac4205306895d0778e03 848 SUPERFAMILY SSF141729 37 159 7.72E-33 T 25-04-2017 A4U88_RS04270 d53940a08b85ac4205306895d0778e03 848 Pfam PF13954 PapC N-terminal domain 39 184 2.6E-41 T 25-04-2017 IPR025885 PapC, N-terminal domain GO:0005515 A4U88_RS04270 d53940a08b85ac4205306895d0778e03 848 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 318 328 - T 25-04-2017 IPR018030 Fimbrial membrane usher, conserved site A4U88_RS04270 d53940a08b85ac4205306895d0778e03 848 Pfam PF13953 PapC C-terminal domain 761 818 1.9E-15 T 25-04-2017 IPR025949 PapC-like, C-terminal domain A4U88_RS04270 d53940a08b85ac4205306895d0778e03 848 Pfam PF00577 Outer membrane usher protein 201 750 1.2E-190 T 25-04-2017 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 A4U88_RS08180 50e7fd8d426acaba7ec05985f0658fa4 552 Pfam PF11398 Protein of unknown function (DUF2813) 1 375 5.3E-157 T 25-04-2017 IPR022602 Protein of unknown function DUF2813 A4U88_RS08180 50e7fd8d426acaba7ec05985f0658fa4 552 Gene3D G3DSA:3.40.50.300 192 350 2.0E-23 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08180 50e7fd8d426acaba7ec05985f0658fa4 552 Gene3D G3DSA:3.40.50.300 1 160 2.0E-23 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS08180 50e7fd8d426acaba7ec05985f0658fa4 552 SUPERFAMILY SSF52540 1 348 4.95E-17 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS12315 485abd0de5caf844ee9c3e4d9f3b1ceb 100 Gene3D G3DSA:2.60.120.10 3 95 1.1E-12 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS12315 485abd0de5caf844ee9c3e4d9f3b1ceb 100 SUPERFAMILY SSF51182 3 95 6.68E-12 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS12315 485abd0de5caf844ee9c3e4d9f3b1ceb 100 Pfam PF07883 Cupin domain 38 96 2.2E-10 T 25-04-2017 IPR013096 Cupin 2, conserved barrel A4U88_RS07185 25a8236dc10b53d01ec7a9cba01ee917 212 SUPERFAMILY SSF55729 2 204 8.7E-23 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07185 25a8236dc10b53d01ec7a9cba01ee917 212 Gene3D G3DSA:3.40.630.30 1 204 1.9E-24 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS07185 25a8236dc10b53d01ec7a9cba01ee917 212 Pfam PF00583 Acetyltransferase (GNAT) family 115 178 5.0E-15 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS22720 412f2214e6f3906513d47f5b3d9021e8 159 Pfam PF01850 PIN domain 2 124 6.2E-17 T 25-04-2017 IPR002716 PIN domain A4U88_RS22720 412f2214e6f3906513d47f5b3d9021e8 159 SUPERFAMILY SSF88723 1 137 9.81E-29 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS22720 412f2214e6f3906513d47f5b3d9021e8 159 Gene3D G3DSA:3.40.50.1010 1 137 1.9E-21 T 25-04-2017 IPR029060 PIN domain-like A4U88_RS22720 412f2214e6f3906513d47f5b3d9021e8 159 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 2 135 10.743 T 25-04-2017 IPR022907 VapC family GO:0004540 A4U88_RS21035 919eebbea297d7d5bf882facc4527ac9 162 SUPERFAMILY SSF52141 3 159 1.31E-43 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS21035 919eebbea297d7d5bf882facc4527ac9 162 Hamap MF_01956 G/U mismatch-specific DNA glycosylase [mug]. 1 162 46.771 T 25-04-2017 IPR023502 G/U mismatch-specific DNA glycosylase, bacterial GO:0006281|GO:0019104 A4U88_RS21035 919eebbea297d7d5bf882facc4527ac9 162 Pfam PF03167 Uracil DNA glycosylase superfamily 4 154 2.8E-25 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS21035 919eebbea297d7d5bf882facc4527ac9 162 Gene3D G3DSA:3.40.470.10 3 159 6.6E-53 T 25-04-2017 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 A4U88_RS04560 6e3ff6bd5db53fecb851d48ab4dba2a8 256 Gene3D G3DSA:3.40.50.150 34 255 1.7E-54 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04560 6e3ff6bd5db53fecb851d48ab4dba2a8 256 SUPERFAMILY SSF53335 12 248 5.52E-52 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04560 6e3ff6bd5db53fecb851d48ab4dba2a8 256 Pfam PF08241 Methyltransferase domain 50 146 6.1E-28 T 25-04-2017 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 A4U88_RS11575 37277f58e670e8c7e340fded8e70eec2 156 Pfam PF02082 Transcriptional regulator 3 82 1.2E-23 T 25-04-2017 IPR000944 Transcription regulator Rrf2-type A4U88_RS11575 37277f58e670e8c7e340fded8e70eec2 156 Gene3D G3DSA:1.10.10.10 3 139 6.1E-40 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS11575 37277f58e670e8c7e340fded8e70eec2 156 SUPERFAMILY SSF46785 4 137 1.22E-30 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS13055 f4345b9b2eb26eca7c06f32fb5d1547e 250 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 247 1.3E-89 T 25-04-2017 IPR009627 Uncharacterised protein family UPF0259 A4U88_RS13055 f4345b9b2eb26eca7c06f32fb5d1547e 250 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 250 23.076 T 25-04-2017 IPR009627 Uncharacterised protein family UPF0259 A4U88_RS12565 d7974704a56eb4462b8fdff4113a43cb 301 SUPERFAMILY SSF53474 12 297 2.03E-60 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12565 d7974704a56eb4462b8fdff4113a43cb 301 Pfam PF12146 Serine aminopeptidase, S33 46 283 6.5E-18 T 25-04-2017 IPR022742 Serine aminopeptidase, S33 A4U88_RS12565 d7974704a56eb4462b8fdff4113a43cb 301 Gene3D G3DSA:3.40.50.1820 14 295 2.6E-61 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS16045 7f0ab10a94e3658122385314f8ddca37 268 Pfam PF13531 Bacterial extracellular solute-binding protein 26 253 1.0E-38 T 25-04-2017 A4U88_RS16045 7f0ab10a94e3658122385314f8ddca37 268 Gene3D G3DSA:3.40.190.10 216 254 1.1E-12 T 25-04-2017 A4U88_RS16045 7f0ab10a94e3658122385314f8ddca37 268 Gene3D G3DSA:3.40.190.10 8 122 1.1E-12 T 25-04-2017 A4U88_RS16045 7f0ab10a94e3658122385314f8ddca37 268 SUPERFAMILY SSF53850 25 253 1.55E-39 T 25-04-2017 A4U88_RS02865 0d2393ec27ca1780891509810f70820a 372 Gene3D G3DSA:3.40.1090.10 27 64 3.4E-4 T 25-04-2017 A4U88_RS02865 0d2393ec27ca1780891509810f70820a 372 Pfam PF01734 Patatin-like phospholipase 27 195 1.7E-21 T 25-04-2017 IPR002641 Patatin/Phospholipase A2-related GO:0006629 A4U88_RS02865 0d2393ec27ca1780891509810f70820a 372 SUPERFAMILY SSF52151 21 288 1.96E-44 T 25-04-2017 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 A4U88_RS19370 f1b44e5b6e7e726ed9bed4c3bceda6ea 401 Gene3D G3DSA:3.40.640.10 32 280 4.0E-76 T 25-04-2017 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 A4U88_RS19370 f1b44e5b6e7e726ed9bed4c3bceda6ea 401 Pfam PF00266 Aminotransferase class-V 21 388 7.5E-138 T 25-04-2017 IPR000192 Aminotransferase class V domain A4U88_RS19370 f1b44e5b6e7e726ed9bed4c3bceda6ea 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 3.5E-222 T 25-04-2017 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 A4U88_RS19370 f1b44e5b6e7e726ed9bed4c3bceda6ea 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 25-04-2017 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site A4U88_RS19370 f1b44e5b6e7e726ed9bed4c3bceda6ea 401 Gene3D G3DSA:3.90.1150.10 281 393 2.6E-25 T 25-04-2017 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 A4U88_RS19370 f1b44e5b6e7e726ed9bed4c3bceda6ea 401 SUPERFAMILY SSF53383 5 396 6.38E-113 T 25-04-2017 IPR015424 Pyridoxal phosphate-dependent transferase A4U88_RS12335 99cc5135249253d2033a9ce33232b177 370 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 352 2.1E-51 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 87 102 - T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 442 1.5E-160 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 PRINTS PR00175 Sodium/alanine symporter signature 178 196 1.4E-55 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 PRINTS PR00175 Sodium/alanine symporter signature 303 321 1.4E-55 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 PRINTS PR00175 Sodium/alanine symporter signature 350 372 1.4E-55 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 PRINTS PR00175 Sodium/alanine symporter signature 87 109 1.4E-55 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 PRINTS PR00175 Sodium/alanine symporter signature 206 225 1.4E-55 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 PRINTS PR00175 Sodium/alanine symporter signature 411 431 1.4E-55 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS03025 508e3346a21d378a94ac47373efefe34 478 Pfam PF01235 Sodium:alanine symporter family 48 453 6.6E-160 T 25-04-2017 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 A4U88_RS04545 7837a17ae2a26f3603a8bc18ec0fd52f 182 SUPERFAMILY SSF55729 9 162 2.04E-33 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS04545 7837a17ae2a26f3603a8bc18ec0fd52f 182 Gene3D G3DSA:3.40.630.30 9 181 3.6E-43 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS04545 7837a17ae2a26f3603a8bc18ec0fd52f 182 Pfam PF13302 Acetyltransferase (GNAT) domain 14 156 1.4E-28 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 2.0E-23 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 58 73 2.0E-23 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 41 2.0E-23 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 43 58 2.0E-23 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 Gene3D G3DSA:1.10.10.10 8 89 9.7E-28 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 SMART SM00418 8 86 7.9E-27 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 SUPERFAMILY SSF46785 5 105 2.72E-26 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14900 c8254fa523ee51e5d4d2939bab474ccc 108 Pfam PF01022 Bacterial regulatory protein, arsR family 15 60 3.3E-14 T 25-04-2017 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 A4U88_RS12875 ad33adfaa7c7b6bf0c64517403c15798 100 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 22.098 T 25-04-2017 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 A4U88_RS12875 ad33adfaa7c7b6bf0c64517403c15798 100 Pfam PF06305 Protein of unknown function (DUF1049) 24 86 1.5E-20 T 25-04-2017 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 A4U88_RS15505 f0a588ec6257160a235d2dafccecba61 452 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 445 1.4E-108 T 25-04-2017 IPR010263 Type VI secretion protein, VC_A0114 A4U88_RS15505 f0a588ec6257160a235d2dafccecba61 452 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 448 5.5E-121 T 25-04-2017 IPR010263 Type VI secretion protein, VC_A0114 A4U88_RS18810 ce54b3bf174001dcbc15bc96ae6aa30e 209 Pfam PF06551 Protein of unknown function (DUF1120) 34 99 1.9E-4 T 25-04-2017 IPR010546 Protein of unknown function DUF1120 A4U88_RS14640 ad4ab3b163449b50cb5c08a790e3309d 176 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 21 150 2.1E-33 T 25-04-2017 IPR017734 Type VI secretion system, lipoprotein SciN A4U88_RS14640 ad4ab3b163449b50cb5c08a790e3309d 176 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 14 144 2.1E-32 T 25-04-2017 IPR017734 Type VI secretion system, lipoprotein SciN A4U88_RS16935 952d69a13b34986303671c79999b4b3e 93 SUPERFAMILY SSF52794 1 88 2.09E-21 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS16935 952d69a13b34986303671c79999b4b3e 93 Gene3D G3DSA:3.40.50.270 2 86 3.0E-14 T 25-04-2017 A4U88_RS16935 952d69a13b34986303671c79999b4b3e 93 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 83 1.3E-17 T 25-04-2017 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 A4U88_RS20540 a8084303efeb0d21e1955b8b9902e927 231 SUPERFAMILY SSF54060 21 226 1.29E-87 T 25-04-2017 A4U88_RS20540 a8084303efeb0d21e1955b8b9902e927 231 Pfam PF04231 Endonuclease I 58 226 1.9E-43 T 25-04-2017 IPR007346 Endonuclease I GO:0004518 A4U88_RS06530 a9154eb8d3ceb895f4dda1989f86eb88 180 Pfam PF00583 Acetyltransferase (GNAT) family 70 145 3.1E-15 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS06530 a9154eb8d3ceb895f4dda1989f86eb88 180 SUPERFAMILY SSF55729 19 160 4.29E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS06530 a9154eb8d3ceb895f4dda1989f86eb88 180 PRINTS PR01754 Streptothricin acetyltransferase signature 137 153 1.3E-11 T 25-04-2017 IPR008125 Streptothricin acetyltransferase A4U88_RS06530 a9154eb8d3ceb895f4dda1989f86eb88 180 PRINTS PR01754 Streptothricin acetyltransferase signature 92 107 1.3E-11 T 25-04-2017 IPR008125 Streptothricin acetyltransferase A4U88_RS06530 a9154eb8d3ceb895f4dda1989f86eb88 180 PRINTS PR01754 Streptothricin acetyltransferase signature 116 131 1.3E-11 T 25-04-2017 IPR008125 Streptothricin acetyltransferase A4U88_RS06530 a9154eb8d3ceb895f4dda1989f86eb88 180 Gene3D G3DSA:3.40.630.30 56 166 5.5E-25 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS13000 83e7a2708037776b10d5c4426a692702 206 SUPERFAMILY SSF55821 1 203 1.34E-65 T 25-04-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain A4U88_RS13000 83e7a2708037776b10d5c4426a692702 206 Pfam PF01300 Telomere recombination 22 198 2.6E-46 T 25-04-2017 IPR006070 YrdC-like domain GO:0003725 A4U88_RS13000 83e7a2708037776b10d5c4426a692702 206 Gene3D G3DSA:3.90.870.10 2 203 3.2E-64 T 25-04-2017 IPR017945 DHBP synthase RibB-like alpha/beta domain A4U88_RS13000 83e7a2708037776b10d5c4426a692702 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 6.8E-74 T 25-04-2017 IPR006070 YrdC-like domain GO:0003725 A4U88_RS03665 edd990a5b19db59e6cd63a5df7cdbb46 253 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 249 39.826 T 25-04-2017 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 A4U88_RS03665 edd990a5b19db59e6cd63a5df7cdbb46 253 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 1.0E-74 T 25-04-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 A4U88_RS03665 edd990a5b19db59e6cd63a5df7cdbb46 253 Gene3D G3DSA:3.40.1210.10 1 247 1.8E-84 T 25-04-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 A4U88_RS03665 edd990a5b19db59e6cd63a5df7cdbb46 253 SUPERFAMILY SSF64167 1 247 6.93E-82 T 25-04-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 A4U88_RS03665 edd990a5b19db59e6cd63a5df7cdbb46 253 Pfam PF01975 Survival protein SurE 3 180 8.1E-56 T 25-04-2017 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 A4U88_RS05995 2822be3fa9adda601b7a8b26538b6e0e 522 PIRSF PIRSF006446 1 522 4.3E-140 T 25-04-2017 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 A4U88_RS05995 2822be3fa9adda601b7a8b26538b6e0e 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 7.6E-173 T 25-04-2017 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 A4U88_RS13360 f598d61990b9a05e9de330ac339f0655 254 Pfam PF06629 MltA-interacting protein MipA 34 254 1.2E-54 T 25-04-2017 IPR010583 MltA-interacting MipA A4U88_RS13360 f598d61990b9a05e9de330ac339f0655 254 Gene3D G3DSA:2.40.160.20 165 235 5.3E-4 T 25-04-2017 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 A4U88_RS02955 64bc855e6d55740555c2eabb68b2b96d 201 Pfam PF13689 Domain of unknown function (DUF4154) 59 195 3.8E-31 T 25-04-2017 IPR025293 Protein of unknown function DUF4154 A4U88_RS17825 7f4e98f25006338b0e93522dc200221f 92 Pfam PF09904 Winged helix-turn helix 4 90 4.5E-39 T 25-04-2017 IPR017162 Uncharacterised conserved protein UCP037266 A4U88_RS17825 7f4e98f25006338b0e93522dc200221f 92 PIRSF PIRSF037266 1 92 1.1E-39 T 25-04-2017 IPR017162 Uncharacterised conserved protein UCP037266 A4U88_RS04760 aff9307529c39784b98cc9f2d44d46c4 418 SUPERFAMILY SSF50182 187 252 2.88E-12 T 25-04-2017 IPR010920 LSM domain A4U88_RS04760 aff9307529c39784b98cc9f2d44d46c4 418 Gene3D G3DSA:2.30.30.60 202 252 4.2E-10 T 25-04-2017 A4U88_RS04760 aff9307529c39784b98cc9f2d44d46c4 418 Pfam PF00924 Mechanosensitive ion channel 143 397 7.8E-56 T 25-04-2017 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 A4U88_RS07605 e2c3b04ec34c74e13df3d0176ae87fd0 135 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 23.389 T 25-04-2017 IPR022957 Uncharacterised protein family UPF0299 A4U88_RS07605 e2c3b04ec34c74e13df3d0176ae87fd0 135 Pfam PF03788 LrgA family 23 114 1.7E-29 T 25-04-2017 IPR005538 LrgA/CidA family GO:0016021 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 Pfam PF02119 Flagellar P-ring protein 22 365 6.7E-137 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 22 37 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 188 206 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 162 180 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 105 122 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 252 264 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 37 52 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 57 72 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 83 102 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 PRINTS PR01010 Flagellar P-ring protein signature 122 140 8.2E-90 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14425 b18d5d942e008f1a0a725177e51363f7 366 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 366 38.374 T 25-04-2017 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 A4U88_RS14820 bd32d9d1301c4a7551a169f6ac0138d8 305 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 2 283 2.2E-58 T 25-04-2017 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 A4U88_RS19690 60a8d6d538c802efc11ab547877520a5 67 Pfam PF15959 Domain of unknown function (DUF4762) 1 46 1.8E-6 T 25-04-2017 IPR031882 Protein of unknown function DUF4762 A4U88_RS00140 f733a57655d997843d24d7140bcd2f69 239 Pfam PF11254 Protein of unknown function (DUF3053) 17 234 3.2E-93 T 25-04-2017 IPR021413 Protein of unknown function DUF3053 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 4 26 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 126 146 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 86 107 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 108 126 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 27 43 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 44 61 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PRINTS PR01004 Flagellar FliJ protein signature 63 84 2.5E-39 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 PIRSF PIRSF019404 1 148 2.9E-54 T 25-04-2017 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 5 144 8.5E-33 T 25-04-2017 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 A4U88_RS14360 82f215ec07fdb4e38b55d88260fae89a 148 Pfam PF02050 Flagellar FliJ protein 19 141 2.2E-36 T 25-04-2017 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 A4U88_RS05065 665eafb0445669742281f2573ab4e6c5 456 SUPERFAMILY SSF75304 18 454 3.01E-125 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS05065 665eafb0445669742281f2573ab4e6c5 456 Gene3D G3DSA:3.90.1300.10 18 453 1.4E-128 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS05065 665eafb0445669742281f2573ab4e6c5 456 Pfam PF01425 Amidase 336 444 4.3E-15 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS05065 665eafb0445669742281f2573ab4e6c5 456 Pfam PF01425 Amidase 36 250 2.8E-79 T 25-04-2017 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 A4U88_RS08510 bb69582c6781d216d51ad00d9f90200d 548 Pfam PF02470 MlaD protein 160 219 3.7E-7 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS08510 bb69582c6781d216d51ad00d9f90200d 548 Pfam PF02470 MlaD protein 44 134 5.6E-11 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS08510 bb69582c6781d216d51ad00d9f90200d 548 Pfam PF02470 MlaD protein 289 391 3.4E-13 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS04245 08a1f1aea2886e57309ffd740c13e305 94 Pfam PF13031 Protein of unknown function (DUF3892) 5 91 8.1E-23 T 25-04-2017 IPR024997 Protein of unknown function DUF3892 A4U88_RS13815 50caecb36fa6e1e9ab3b5319001cf52f 272 SUPERFAMILY SSF53335 4 258 1.12E-44 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS13815 50caecb36fa6e1e9ab3b5319001cf52f 272 Pfam PF13847 Methyltransferase domain 88 203 2.5E-12 T 25-04-2017 IPR025714 Methyltransferase domain A4U88_RS13815 50caecb36fa6e1e9ab3b5319001cf52f 272 PIRSF PIRSF018249 1 271 1.5E-85 T 25-04-2017 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 A4U88_RS13815 50caecb36fa6e1e9ab3b5319001cf52f 272 Gene3D G3DSA:3.40.50.150 66 215 6.1E-22 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 SUPERFAMILY SSF54637 4 133 1.04E-40 T 25-04-2017 IPR029069 HotDog domain A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 Gene3D G3DSA:3.10.129.10 3 133 3.2E-50 T 25-04-2017 IPR029069 HotDog domain A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 11 28 - T 25-04-2017 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 PIRSF PIRSF003230 1 134 2.1E-48 T 25-04-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 6 130 1.8E-51 T 25-04-2017 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 Pfam PF03061 Thioesterase superfamily 21 103 4.3E-20 T 25-04-2017 IPR006683 Thioesterase domain Reactome: R-HSA-75105 A4U88_RS06015 3cc1adaeb448b9feba830efdaeb5ed33 134 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 125 1.2E-44 T 25-04-2017 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 A4U88_RS14185 cbe9acedffa5be83eeae4bd051392e30 351 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 130 351 4.2E-43 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14185 cbe9acedffa5be83eeae4bd051392e30 351 SUPERFAMILY SSF161098 107 176 3.79E-20 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14185 cbe9acedffa5be83eeae4bd051392e30 351 SUPERFAMILY SSF161098 215 336 3.79E-20 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14185 cbe9acedffa5be83eeae4bd051392e30 351 Gene3D G3DSA:1.10.3720.10 218 343 1.1E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS14185 cbe9acedffa5be83eeae4bd051392e30 351 Gene3D G3DSA:1.10.3720.10 106 179 1.1E-21 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS21180 ed43662e8e56fee0040f688111e36738 124 Pfam PF13721 SecD export protein N-terminal TM region 4 103 8.8E-23 T 25-04-2017 IPR027398 SecD export protein N-terminal TM domain A4U88_RS21180 ed43662e8e56fee0040f688111e36738 124 Hamap MF_00904 Modulator protein MzrA [mzrA]. 1 114 27.502 T 25-04-2017 IPR026574 Modulator protein MzrA A4U88_RS19915 a509e981a9caea1a5423482ef4ccf5a1 302 Pfam PF00480 ROK family 6 291 2.8E-49 T 25-04-2017 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 A4U88_RS19915 a509e981a9caea1a5423482ef4ccf5a1 302 Gene3D G3DSA:3.30.420.40 2 138 1.3E-26 T 25-04-2017 A4U88_RS19915 a509e981a9caea1a5423482ef4ccf5a1 302 SUPERFAMILY SSF53067 2 294 8.8E-40 T 25-04-2017 A4U88_RS19915 a509e981a9caea1a5423482ef4ccf5a1 302 Gene3D G3DSA:3.30.420.40 139 293 5.6E-31 T 25-04-2017 A4U88_RS17120 3ad0799cc4c4618c9ea5404b49310255 342 PIRSF PIRSF020588 1 341 1.7E-144 T 25-04-2017 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 A4U88_RS14810 4d2d6b9bc3f086eabdda56ab5fa9093b 144 Pfam PF00717 Peptidase S24-like 62 127 1.9E-13 T 25-04-2017 IPR019759 Peptidase S24/S26A/S26B A4U88_RS14810 4d2d6b9bc3f086eabdda56ab5fa9093b 144 Gene3D G3DSA:2.10.109.10 30 140 3.0E-45 T 25-04-2017 IPR028360 Peptidase S24/S26, beta-ribbon domain A4U88_RS14810 4d2d6b9bc3f086eabdda56ab5fa9093b 144 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 57 67 2.3E-10 T 25-04-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 A4U88_RS14810 4d2d6b9bc3f086eabdda56ab5fa9093b 144 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 68 79 2.3E-10 T 25-04-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 A4U88_RS14810 4d2d6b9bc3f086eabdda56ab5fa9093b 144 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 96 108 2.3E-10 T 25-04-2017 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 A4U88_RS14810 4d2d6b9bc3f086eabdda56ab5fa9093b 144 SUPERFAMILY SSF51306 19 139 7.5E-34 T 25-04-2017 IPR015927 Peptidase S24/S26A/S26B/S26C A4U88_RS02645 537f056ef591ee2af3bdcef398159693 497 PIRSF PIRSF006060 2 489 1.6E-66 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS02645 537f056ef591ee2af3bdcef398159693 497 Pfam PF13520 Amino acid permease 17 436 2.8E-36 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS18990 1e2d09b49f321071da68d63225790de5 368 Gene3D G3DSA:1.10.3720.10 152 337 1.4E-45 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18990 1e2d09b49f321071da68d63225790de5 368 SUPERFAMILY SSF161098 154 336 6.8E-44 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS18990 1e2d09b49f321071da68d63225790de5 368 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 175 340 3.6E-27 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS23600 f289e53c1275e9e2c8eb4fd4dc218563 139 Pfam PF05656 Protein of unknown function (DUF805) 7 132 4.4E-22 T 25-04-2017 IPR008523 Protein of unknown function DUF805 GO:0016021 A4U88_RS16760 5e850e8cf31992b1651f4de1a8a42a65 103 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 103 3.3E-30 T 25-04-2017 IPR010279 Protein of unknown function DUF883, ElaB A4U88_RS06450 b43e104d09b8467e7703c68f8dc79e2d 145 Pfam PF05232 Chlorhexidine efflux transporter 71 133 8.7E-25 T 25-04-2017 IPR007896 Chlorhexidine efflux transporter A4U88_RS06450 b43e104d09b8467e7703c68f8dc79e2d 145 Pfam PF05232 Chlorhexidine efflux transporter 3 65 1.2E-18 T 25-04-2017 IPR007896 Chlorhexidine efflux transporter A4U88_RS08385 ab5be0e2d805d9854af4e1138c168fb0 257 Gene3D G3DSA:3.40.50.620 71 209 3.8E-12 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS08385 ab5be0e2d805d9854af4e1138c168fb0 257 Pfam PF02698 DUF218 domain 81 242 1.4E-23 T 25-04-2017 IPR003848 Domain of unknown function DUF218 A4U88_RS18905 c03d71b48257ca3b57611a355a941269 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 102 7.3E-29 T 25-04-2017 IPR010279 Protein of unknown function DUF883, ElaB A4U88_RS00220 85436d3854f2823fbaaab77425069ad1 216 Pfam PF08786 Domain of unknown function (DUF1795) 71 212 2.5E-7 T 25-04-2017 IPR014894 Protein DcrB A4U88_RS00220 85436d3854f2823fbaaab77425069ad1 216 Gene3D G3DSA:3.40.1000.10 124 214 6.5E-4 T 25-04-2017 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Reactome: R-HSA-5576892 A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 242 3.7E-50 T 25-04-2017 A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 Gene3D G3DSA:3.40.50.720 5 243 1.4E-69 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.0E-34 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 2.0E-34 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.0E-34 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.0E-34 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 2.0E-34 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.0E-34 T 25-04-2017 IPR002347 Short-chain dehydrogenase/reductase SDR A4U88_RS09980 80be4cd61a3f9c32ae6def74f34ed145 246 SUPERFAMILY SSF51735 5 243 6.67E-67 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS06605 b6bd90a88923d2bcb5cee6511568df86 307 SUPERFAMILY SSF51395 14 275 1.25E-6 T 25-04-2017 A4U88_RS06605 b6bd90a88923d2bcb5cee6511568df86 307 Gene3D G3DSA:3.20.20.70 19 174 1.5E-4 T 25-04-2017 IPR013785 Aldolase-type TIM barrel GO:0003824 A4U88_RS07580 5d7fd87e666ae3bf1bca4ef82c33b5cb 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 24 308 5.6E-50 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS00240 372942ceb37d152db1ce4861acc702af 86 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 43 2.1E-11 T 25-04-2017 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 A4U88_RS00240 372942ceb37d152db1ce4861acc702af 86 SUPERFAMILY SSF47598 3 45 8.15E-10 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS23725 a6094f2232200e547cee48c66b646d41 388 Gene3D G3DSA:3.40.50.2000 179 363 1.6E-17 T 25-04-2017 A4U88_RS23725 a6094f2232200e547cee48c66b646d41 388 SUPERFAMILY SSF53756 338 383 3.02E-45 T 25-04-2017 A4U88_RS23725 a6094f2232200e547cee48c66b646d41 388 SUPERFAMILY SSF53756 5 303 3.02E-45 T 25-04-2017 A4U88_RS23725 a6094f2232200e547cee48c66b646d41 388 Pfam PF00534 Glycosyl transferases group 1 180 303 2.2E-21 T 25-04-2017 IPR001296 Glycosyl transferase, family 1 A4U88_RS23725 a6094f2232200e547cee48c66b646d41 388 Pfam PF13439 Glycosyltransferase Family 4 13 159 6.8E-9 T 25-04-2017 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 A4U88_RS06155 9fc1296062fa57736f725b56cf4290d3 272 Pfam PF02517 CAAX protease self-immunity 169 258 1.2E-19 T 25-04-2017 IPR003675 CAAX amino terminal protease GO:0016020 A4U88_RS22030 fc111920e8805a1ab6a5eb32bca40070 330 Pfam PF00005 ABC transporter 20 161 1.9E-35 T 25-04-2017 IPR003439 ABC transporter-like GO:0005524|GO:0016887 A4U88_RS22030 fc111920e8805a1ab6a5eb32bca40070 330 SUPERFAMILY SSF50331 255 311 7.94E-5 T 25-04-2017 IPR008995 Molybdate/tungstate binding, C-terminal A4U88_RS22030 fc111920e8805a1ab6a5eb32bca40070 330 SMART SM00382 28 211 1.3E-15 T 25-04-2017 IPR003593 AAA+ ATPase domain A4U88_RS22030 fc111920e8805a1ab6a5eb32bca40070 330 Gene3D G3DSA:3.40.50.300 4 235 1.2E-81 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS22030 fc111920e8805a1ab6a5eb32bca40070 330 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 25-04-2017 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 A4U88_RS22030 fc111920e8805a1ab6a5eb32bca40070 330 SUPERFAMILY SSF52540 4 241 1.56E-85 T 25-04-2017 IPR027417 P-loop containing nucleoside triphosphate hydrolase A4U88_RS21475 fb2dd11569b59b0680eca475bf5ee929 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 3.1E-38 T 25-04-2017 IPR020037 Protein of unknown function DUF4312 A4U88_RS21475 fb2dd11569b59b0680eca475bf5ee929 98 Pfam PF14189 Domain of unknown function (DUF4312) 6 88 2.7E-37 T 25-04-2017 IPR020037 Protein of unknown function DUF4312 A4U88_RS14735 fd997971e79b64805b9479f5654f1142 191 SUPERFAMILY SSF160719 69 178 4.05E-9 T 25-04-2017 A4U88_RS14735 fd997971e79b64805b9479f5654f1142 191 Pfam PF04965 Gene 25-like lysozyme 63 167 4.2E-21 T 25-04-2017 IPR007048 GpW/Gp25/anti-adapter protein IraD A4U88_RS20695 7f1c6bb495fe742283b5433c901a1f1c 204 SMART SM00530 15 71 6.3E-4 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS20695 7f1c6bb495fe742283b5433c901a1f1c 204 Gene3D G3DSA:1.10.260.40 11 76 1.9E-12 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS20695 7f1c6bb495fe742283b5433c901a1f1c 204 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 15 74 3.9E-7 T 25-04-2017 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 A4U88_RS20695 7f1c6bb495fe742283b5433c901a1f1c 204 SUPERFAMILY SSF47413 9 72 6.48E-9 T 25-04-2017 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 A4U88_RS16465 d862d58331aad947f340daea209e0f0f 335 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.502 T 25-04-2017 IPR007358 Nucleoid-associated protein NdpA GO:0009295 A4U88_RS16465 d862d58331aad947f340daea209e0f0f 335 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 4.4E-97 T 25-04-2017 IPR007358 Nucleoid-associated protein NdpA GO:0009295 A4U88_RS12270 ef5bfb83c0196f6355bf841a6ff58da6 82 SUPERFAMILY SSF69047 4 58 1.57E-5 T 25-04-2017 IPR008462 CsbD-like A4U88_RS12270 ef5bfb83c0196f6355bf841a6ff58da6 82 Pfam PF05957 Bacterial protein of unknown function (DUF883) 4 82 1.5E-11 T 25-04-2017 IPR010279 Protein of unknown function DUF883, ElaB A4U88_RS12270 ef5bfb83c0196f6355bf841a6ff58da6 82 Gene3D G3DSA:1.10.1470.10 4 58 3.5E-9 T 25-04-2017 IPR008462 CsbD-like A4U88_RS22215 cb50d091d8ce8177f57bdf3caaed5e6b 129 Gene3D G3DSA:3.90.1030.10 1 117 2.6E-51 T 25-04-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22215 cb50d091d8ce8177f57bdf3caaed5e6b 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 25-04-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22215 cb50d091d8ce8177f57bdf3caaed5e6b 129 SUPERFAMILY SSF64263 1 118 5.36E-51 T 25-04-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22215 cb50d091d8ce8177f57bdf3caaed5e6b 129 Pfam PF01196 Ribosomal protein L17 20 116 1.2E-34 T 25-04-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22215 cb50d091d8ce8177f57bdf3caaed5e6b 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 7.1E-51 T 25-04-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS22215 cb50d091d8ce8177f57bdf3caaed5e6b 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 25-04-2017 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 A4U88_RS08550 0f35136981e21af91d6a27d4af3bc52e 152 Pfam PF06303 Organiser of macrodomain of Terminus of chromosome 1 147 1.8E-76 T 25-04-2017 IPR009390 Macrodomain Ter protein, MatP GO:0043565 A4U88_RS08550 0f35136981e21af91d6a27d4af3bc52e 152 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 6.0E-62 T 25-04-2017 IPR009390 Macrodomain Ter protein, MatP GO:0043565 A4U88_RS08550 0f35136981e21af91d6a27d4af3bc52e 152 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 30.798 T 25-04-2017 IPR009390 Macrodomain Ter protein, MatP GO:0043565 A4U88_RS22965 cccfe0892b410a115b40e8b72f271d31 95 Pfam PF04703 FaeA-like protein 42 71 1.5E-4 T 25-04-2017 IPR006793 FaeA-like protein GO:0006355|GO:0009289 A4U88_RS22965 cccfe0892b410a115b40e8b72f271d31 95 Gene3D G3DSA:1.10.10.10 15 87 4.0E-14 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 Gene3D G3DSA:2.40.50.100 215 248 2.0E-20 T 25-04-2017 A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 Gene3D G3DSA:2.40.50.100 60 94 2.0E-20 T 25-04-2017 A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 345 4.0E-137 T 25-04-2017 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 346 1.6E-15 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 SUPERFAMILY SSF111369 194 269 9.42E-10 T 25-04-2017 A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 61 292 2.5E-13 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS19030 b8b1c993c2293441067543ca580ef9a6 390 SUPERFAMILY SSF111369 58 113 3.79E-7 T 25-04-2017 A4U88_RS07735 45680816029d0ec8fc973d6dc60d4646 1002 Pfam PF13946 Domain of unknown function (DUF4214) 180 239 2.8E-10 T 25-04-2017 IPR025282 Domain of unknown function DUF4214 A4U88_RS23160 653223feab8164a0c0fb5c2581562342 317 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 309 8.4E-37 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS15040 8fe6927b5ac51a4e7f70bb583e7e2532 193 Pfam PF00156 Phosphoribosyl transferase domain 133 180 2.4E-7 T 25-04-2017 IPR000836 Phosphoribosyltransferase domain GO:0009116 A4U88_RS15040 8fe6927b5ac51a4e7f70bb583e7e2532 193 Gene3D G3DSA:3.40.50.2020 107 188 1.2E-14 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS15040 8fe6927b5ac51a4e7f70bb583e7e2532 193 SUPERFAMILY SSF53271 116 187 5.24E-16 T 25-04-2017 IPR029057 Phosphoribosyltransferase-like A4U88_RS12700 e4e038ffef6dd36e61d8d060946f9431 88 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 19 78 1.9E-27 T 25-04-2017 IPR014321 Phage shock protein, PspD A4U88_RS05655 16d50d0912014c0edcb0a58ed03c1117 160 Pfam PF07295 Zinc-ribbon containing domain 14 157 1.1E-55 T 25-04-2017 IPR009912 Zinc-ribbon containing domain A4U88_RS15085 53415c03d4d57f05554a9f6d87193867 88 Pfam PF04971 Bacteriophage P21 holin S 7 59 1.1E-5 T 25-04-2017 IPR007054 Lysis protein S A4U88_RS21105 0cd428a7f92696291c3568e872b23a7f 184 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 48 170 2.4E-9 T 25-04-2017 IPR000477 Reverse transcriptase domain A4U88_RS17050 6b05e4800e691056a56debfc0135dbb7 306 SUPERFAMILY SSF103481 36 139 1.57E-10 T 25-04-2017 A4U88_RS17050 6b05e4800e691056a56debfc0135dbb7 306 Pfam PF00892 EamA-like transporter family 4 135 1.5E-19 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS17050 6b05e4800e691056a56debfc0135dbb7 306 Pfam PF00892 EamA-like transporter family 150 280 9.8E-21 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS17050 6b05e4800e691056a56debfc0135dbb7 306 SUPERFAMILY SSF103481 186 283 1.44E-12 T 25-04-2017 A4U88_RS12505 9b85db491d5407d07260df9820319622 320 Gene3D G3DSA:3.40.50.620 1 142 9.8E-25 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS12505 9b85db491d5407d07260df9820319622 320 SUPERFAMILY SSF52402 155 305 2.18E-23 T 25-04-2017 A4U88_RS12505 9b85db491d5407d07260df9820319622 320 Pfam PF00582 Universal stress protein family 175 300 2.3E-13 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS12505 9b85db491d5407d07260df9820319622 320 Pfam PF00582 Universal stress protein family 4 146 1.9E-19 T 25-04-2017 IPR006016 UspA GO:0006950 A4U88_RS12505 9b85db491d5407d07260df9820319622 320 Gene3D G3DSA:3.40.50.620 143 304 2.4E-30 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS12505 9b85db491d5407d07260df9820319622 320 SUPERFAMILY SSF52402 4 155 2.26E-28 T 25-04-2017 A4U88_RS16230 5316356276f5c586f14230a34e3ff0c2 369 SUPERFAMILY SSF51735 318 353 4.71E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16230 5316356276f5c586f14230a34e3ff0c2 369 SUPERFAMILY SSF51735 1 288 4.71E-32 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS16230 5316356276f5c586f14230a34e3ff0c2 369 Pfam PF07993 Male sterility protein 6 237 3.1E-35 T 25-04-2017 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 A4U88_RS16230 5316356276f5c586f14230a34e3ff0c2 369 Gene3D G3DSA:3.40.50.720 3 278 2.5E-33 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS13620 6a7322c0051e896e67e7a75b4657668d 192 Gene3D G3DSA:3.40.50.850 2 188 3.2E-51 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS13620 6a7322c0051e896e67e7a75b4657668d 192 Pfam PF00857 Isochorismatase family 9 183 1.0E-38 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS13620 6a7322c0051e896e67e7a75b4657668d 192 SUPERFAMILY SSF52499 4 191 2.88E-50 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS14125 c6492e96ddcdfa470f12482bf702e222 320 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 216 2.5E-30 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS14125 c6492e96ddcdfa470f12482bf702e222 320 SUPERFAMILY SSF51735 1 265 1.08E-50 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS14125 c6492e96ddcdfa470f12482bf702e222 320 Gene3D G3DSA:3.40.50.720 5 254 3.4E-45 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS08185 406b5a9359144d73d56b383a72faea08 317 Pfam PF04393 Protein of unknown function (DUF535) 33 309 5.8E-101 T 25-04-2017 IPR007488 Protein of unknown function DUF535 A4U88_RS20700 e431dbdf211479f48e42272b8beca728 298 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 89 279 9.2E-30 T 25-04-2017 IPR003744 Protein of unknown function DUF165 A4U88_RS20700 e431dbdf211479f48e42272b8beca728 298 Pfam PF02592 Putative vitamin uptake transporter 116 272 6.8E-38 T 25-04-2017 IPR003744 Protein of unknown function DUF165 A4U88_RS10275 3b8a7a3c127ea0e433f68fe6b58dff4b 876 Pfam PF02470 MlaD protein 46 137 7.7E-17 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS10275 3b8a7a3c127ea0e433f68fe6b58dff4b 876 Pfam PF02470 MlaD protein 746 807 7.9E-8 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS10275 3b8a7a3c127ea0e433f68fe6b58dff4b 876 Pfam PF02470 MlaD protein 281 348 8.7E-6 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS10275 3b8a7a3c127ea0e433f68fe6b58dff4b 876 Pfam PF02470 MlaD protein 163 220 2.8E-6 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS10275 3b8a7a3c127ea0e433f68fe6b58dff4b 876 Pfam PF02470 MlaD protein 633 722 1.2E-10 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS10275 3b8a7a3c127ea0e433f68fe6b58dff4b 876 Pfam PF02470 MlaD protein 394 455 5.4E-6 T 25-04-2017 IPR003399 Mce/MlaD A4U88_RS04395 7c9bbd228450e1bb3a4de0143437e57c 174 SUPERFAMILY SSF81342 3 169 2.82E-25 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS04395 7c9bbd228450e1bb3a4de0143437e57c 174 Pfam PF01292 Prokaryotic cytochrome b561 5 169 1.3E-19 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS05025 629461c52b0b00a0166066b427aa9a19 428 TIGRFAM TIGR00836 amt: ammonium transporter 31 426 2.6E-134 T 25-04-2017 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 A4U88_RS05025 629461c52b0b00a0166066b427aa9a19 428 SUPERFAMILY SSF111352 27 407 5.49E-126 T 25-04-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 A4U88_RS05025 629461c52b0b00a0166066b427aa9a19 428 ProSitePatterns PS01219 Ammonium transporters signature. 182 207 - T 25-04-2017 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 A4U88_RS05025 629461c52b0b00a0166066b427aa9a19 428 Pfam PF00909 Ammonium Transporter Family 33 426 9.7E-123 T 25-04-2017 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 A4U88_RS05025 629461c52b0b00a0166066b427aa9a19 428 Gene3D G3DSA:1.10.3430.10 26 407 3.7E-136 T 25-04-2017 IPR029020 Ammonium/urea transporter A4U88_RS14450 f8de01a8174ee59e5da9dfd9172e15de 225 Pfam PF03963 Flagellar hook capping protein - N-terminal region 19 76 3.4E-22 T 25-04-2017 IPR005648 Flagellar hook capping protein A4U88_RS14450 f8de01a8174ee59e5da9dfd9172e15de 225 Pfam PF13860 FlgD Ig-like domain 114 181 4.4E-22 T 25-04-2017 IPR025965 FlgD Ig-like domain A4U88_RS14450 f8de01a8174ee59e5da9dfd9172e15de 225 Pfam PF13861 FlgD Tudor-like domain 84 222 1.8E-15 T 25-04-2017 IPR025963 FlgD Tudor-like domain A4U88_RS13700 eac88313c2327a5904d7c27cdcaa70d1 401 Gene3D G3DSA:1.20.1250.20 199 386 8.2E-17 T 25-04-2017 A4U88_RS13700 eac88313c2327a5904d7c27cdcaa70d1 401 Gene3D G3DSA:1.20.1250.20 18 186 5.2E-24 T 25-04-2017 A4U88_RS13700 eac88313c2327a5904d7c27cdcaa70d1 401 SUPERFAMILY SSF103473 14 392 1.05E-49 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS13700 eac88313c2327a5904d7c27cdcaa70d1 401 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 40.574 T 25-04-2017 IPR022855 Multidrug resistance protein MdtH A4U88_RS13700 eac88313c2327a5904d7c27cdcaa70d1 401 Pfam PF07690 Major Facilitator Superfamily 20 237 3.0E-21 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS12060 ac78747cdae586455bd02ffa2831f883 117 Pfam PF07377 Protein of unknown function (DUF1493) 1 108 1.2E-28 T 25-04-2017 IPR010862 Protein of unknown function DUF1493 A4U88_RS12595 ee435badf50a7b85434d67171d182eab 65 Pfam PF13617 YnbE-like lipoprotein 9 63 9.0E-29 T 25-04-2017 IPR025985 YnbE-like lipoprotein A4U88_RS12595 ee435badf50a7b85434d67171d182eab 65 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 20 65 9.0E-16 T 25-04-2017 A4U88_RS23975 82e99d94d454afdba11981dae5f68d03 328 Gene3D G3DSA:3.90.1200.10 106 325 3.2E-47 T 25-04-2017 A4U88_RS23975 82e99d94d454afdba11981dae5f68d03 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 46.193 T 25-04-2017 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 A4U88_RS23975 82e99d94d454afdba11981dae5f68d03 328 Pfam PF01636 Phosphotransferase enzyme family 33 261 2.4E-45 T 25-04-2017 IPR002575 Aminoglycoside phosphotransferase A4U88_RS23975 82e99d94d454afdba11981dae5f68d03 328 SUPERFAMILY SSF56112 6 327 5.98E-89 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS14625 9ce83649e462c8e9d5d386c860554dcd 211 Pfam PF12059 Protein of unknown function (DUF3540) 22 211 9.8E-65 T 25-04-2017 IPR021927 Protein of unknown function DUF3540 A4U88_RS10750 79d1e06e0cf92d3d3678fc6fe23f6b29 97 Pfam PF11720 Peptidase inhibitor I78 family 38 97 8.3E-10 T 25-04-2017 IPR021719 Proteinase inhibitor I78 A4U88_RS16005 46ede1c3de9f6e7052cc9c2bc1b3a5db 428 Pfam PF02653 Branched-chain amino acid transport system / permease component 120 405 1.0E-48 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS16005 46ede1c3de9f6e7052cc9c2bc1b3a5db 428 Pfam PF11862 Domain of unknown function (DUF3382) 15 112 2.5E-19 T 25-04-2017 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 Pfam PF01050 Mannose-6-phosphate isomerase 319 469 5.1E-66 T 25-04-2017 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 4 473 3.3E-216 T 25-04-2017 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882 A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 Gene3D G3DSA:3.90.550.10 2 275 7.5E-95 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 SUPERFAMILY SSF51182 189 473 2.74E-81 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 SUPERFAMILY SSF53448 4 285 6.28E-70 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 Pfam PF00483 Nucleotidyl transferase 6 289 3.9E-68 T 25-04-2017 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 A4U88_RS07755 5a30938864ce0188510aca4ab82bce2c 474 Gene3D G3DSA:2.60.120.10 362 473 1.3E-40 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS18040 701789b640203f449309a96b4e39b44c 60 Pfam PF11119 Protein of unknown function (DUF2633) 1 56 1.2E-28 T 25-04-2017 IPR022576 Protein of unknown function DUF2633 A4U88_RS18040 701789b640203f449309a96b4e39b44c 60 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 2 36 2.0E-6 T 25-04-2017 IPR022576 Protein of unknown function DUF2633 A4U88_RS08830 c5c2c5e0a0a0f69a8b42a2c3b6006ebf 521 PIRSF PIRSF006060 1 454 3.4E-73 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS08830 c5c2c5e0a0a0f69a8b42a2c3b6006ebf 521 Pfam PF13520 Amino acid permease 12 465 3.8E-40 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS21250 07e8012d717f17fa2aec9c78e7a0831b 191 SMART SM00749 51 114 2.8E-12 T 25-04-2017 IPR014004 Transport-associated and nodulation domain, bacteria A4U88_RS21250 07e8012d717f17fa2aec9c78e7a0831b 191 SMART SM00749 129 191 5.4E-4 T 25-04-2017 IPR014004 Transport-associated and nodulation domain, bacteria A4U88_RS21250 07e8012d717f17fa2aec9c78e7a0831b 191 Pfam PF04972 BON domain 124 190 1.9E-17 T 25-04-2017 IPR007055 BON domain A4U88_RS21250 07e8012d717f17fa2aec9c78e7a0831b 191 Pfam PF04972 BON domain 46 113 4.7E-13 T 25-04-2017 IPR007055 BON domain A4U88_RS18845 54340f874e3e97ae64d7a9e153b766a4 92 SUPERFAMILY SSF55729 7 90 5.59E-24 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18845 54340f874e3e97ae64d7a9e153b766a4 92 Pfam PF14542 GCN5-related N-acetyl-transferase 11 90 2.7E-21 T 25-04-2017 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase A4U88_RS18845 54340f874e3e97ae64d7a9e153b766a4 92 Gene3D G3DSA:3.40.630.30 7 91 9.2E-32 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS15180 fccb386c5ed012937ec9032b9f56bf9a 73 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 1.2E-19 T 25-04-2017 IPR007684 Zinc finger, Ogr/Delta-type A4U88_RS11025 4b02d06a786082e6edad9dde4927084a 334 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 3.2E-104 T 25-04-2017 IPR016833 Putative sodium bile acid cotransporter A4U88_RS11025 4b02d06a786082e6edad9dde4927084a 334 PIRSF PIRSF026166 1 334 3.4E-133 T 25-04-2017 IPR016833 Putative sodium bile acid cotransporter A4U88_RS02850 708c8dc4ae91ee9771970621cc5b2d2a 204 SMART SM00749 62 125 1.4E-10 T 25-04-2017 IPR014004 Transport-associated and nodulation domain, bacteria A4U88_RS02850 708c8dc4ae91ee9771970621cc5b2d2a 204 SMART SM00749 141 204 6.1E-11 T 25-04-2017 IPR014004 Transport-associated and nodulation domain, bacteria A4U88_RS02850 708c8dc4ae91ee9771970621cc5b2d2a 204 Pfam PF04972 BON domain 137 204 2.1E-19 T 25-04-2017 IPR007055 BON domain A4U88_RS02850 708c8dc4ae91ee9771970621cc5b2d2a 204 Pfam PF04972 BON domain 57 124 7.2E-20 T 25-04-2017 IPR007055 BON domain A4U88_RS22880 7844431468982ef611d6d04d0c0619a6 231 SUPERFAMILY SSF51182 1 231 2.2E-80 T 25-04-2017 IPR011051 RmlC-like cupin domain A4U88_RS22880 7844431468982ef611d6d04d0c0619a6 231 Pfam PF02678 Pirin 8 119 6.9E-38 T 25-04-2017 IPR003829 Pirin, N-terminal domain A4U88_RS22880 7844431468982ef611d6d04d0c0619a6 231 PIRSF PIRSF006232 1 230 2.1E-57 T 25-04-2017 IPR012093 Pirin A4U88_RS22880 7844431468982ef611d6d04d0c0619a6 231 Gene3D G3DSA:2.60.120.10 4 230 1.7E-71 T 25-04-2017 IPR014710 RmlC-like jelly roll fold A4U88_RS14920 538e353992c741ae08f21894405ce0e2 257 Pfam PF11750 Protein of unknown function (DUF3307) 8 119 3.2E-25 T 25-04-2017 IPR021737 Bacteriophage phiKZ, Orf197 A4U88_RS16870 848321356a2878297685625966efc968 145 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 20.151 T 25-04-2017 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 A4U88_RS16870 848321356a2878297685625966efc968 145 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 27 123 1.4E-31 T 25-04-2017 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 A4U88_RS09645 0cce99485a02b777757eb017ad5c5811 177 Gene3D G3DSA:2.60.40.1090 24 177 1.0E-23 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS09645 0cce99485a02b777757eb017ad5c5811 177 SUPERFAMILY SSF49401 24 177 1.34E-22 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS09645 0cce99485a02b777757eb017ad5c5811 177 Pfam PF00419 Fimbrial protein 25 177 5.7E-12 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01845 383340ea253762d800883460f1321dc3 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 3.6E-23 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS01845 383340ea253762d800883460f1321dc3 87 SUPERFAMILY SSF159871 3 87 6.41E-27 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS01845 383340ea253762d800883460f1321dc3 87 Gene3D G3DSA:3.30.1660.10 18 87 1.7E-28 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS05130 007281a01adf62d4f6dc310e443c1196 395 Pfam PF00529 HlyD membrane-fusion protein of T1SS 97 362 1.8E-12 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS05130 007281a01adf62d4f6dc310e443c1196 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 295 5.7E-13 T 25-04-2017 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain A4U88_RS05130 007281a01adf62d4f6dc310e443c1196 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 378 1.9E-83 T 25-04-2017 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 A4U88_RS05130 007281a01adf62d4f6dc310e443c1196 395 SUPERFAMILY SSF111369 54 302 1.57E-89 T 25-04-2017 A4U88_RS05130 007281a01adf62d4f6dc310e443c1196 395 Gene3D G3DSA:2.40.50.100 175 210 6.2E-25 T 25-04-2017 A4U88_RS05130 007281a01adf62d4f6dc310e443c1196 395 Gene3D G3DSA:2.40.50.100 67 100 6.2E-25 T 25-04-2017 A4U88_RS20965 06a01193c9abeff68c8d19e5cb1ac351 91 Pfam PF04380 Membrane fusogenic activity 1 77 5.3E-29 T 25-04-2017 IPR007475 Membrane fusogenic activity A4U88_RS17230 1989f3e03be106e53946bc7ee2f8adb9 252 PRINTS PR01805 VacJ lipoprotein signature 139 156 1.0E-32 T 25-04-2017 IPR007428 MlaA lipoprotein GO:0016020 A4U88_RS17230 1989f3e03be106e53946bc7ee2f8adb9 252 PRINTS PR01805 VacJ lipoprotein signature 31 44 1.0E-32 T 25-04-2017 IPR007428 MlaA lipoprotein GO:0016020 A4U88_RS17230 1989f3e03be106e53946bc7ee2f8adb9 252 PRINTS PR01805 VacJ lipoprotein signature 100 117 1.0E-32 T 25-04-2017 IPR007428 MlaA lipoprotein GO:0016020 A4U88_RS17230 1989f3e03be106e53946bc7ee2f8adb9 252 PRINTS PR01805 VacJ lipoprotein signature 49 65 1.0E-32 T 25-04-2017 IPR007428 MlaA lipoprotein GO:0016020 A4U88_RS17230 1989f3e03be106e53946bc7ee2f8adb9 252 Pfam PF04333 MlaA lipoprotein 30 223 8.9E-66 T 25-04-2017 IPR007428 MlaA lipoprotein GO:0016020 A4U88_RS17840 a17dbc25ef85a50b4389808292f39ba8 143 Pfam PF13673 Acetyltransferase (GNAT) domain 32 134 7.9E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS17840 a17dbc25ef85a50b4389808292f39ba8 143 SUPERFAMILY SSF55729 13 127 1.1E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS17840 a17dbc25ef85a50b4389808292f39ba8 143 Gene3D G3DSA:3.40.630.30 12 128 1.6E-22 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09030 a2724a1d8f97937f4951f98b7e430d91 69 Pfam PF07119 Protein of unknown function (DUF1375) 3 36 2.3E-4 T 25-04-2017 IPR010780 Protein of unknown function DUF1375 A4U88_RS09030 a2724a1d8f97937f4951f98b7e430d91 69 Pfam PF07119 Protein of unknown function (DUF1375) 43 63 2.3E-4 T 25-04-2017 IPR010780 Protein of unknown function DUF1375 A4U88_RS09655 bea7821f516f09ab03a67691f7237a47 164 Pfam PF01638 HxlR-like helix-turn-helix 20 104 1.0E-18 T 25-04-2017 IPR002577 Helix-turn-helix, HxlR type A4U88_RS09655 bea7821f516f09ab03a67691f7237a47 164 SUPERFAMILY SSF46785 6 143 6.59E-32 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS09655 bea7821f516f09ab03a67691f7237a47 164 Gene3D G3DSA:1.10.10.10 6 103 8.0E-25 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS07510 75d948a7090de06ee8b8738c50833419 511 Gene3D G3DSA:3.10.105.10 281 480 2.9E-60 T 25-04-2017 A4U88_RS07510 75d948a7090de06ee8b8738c50833419 511 PIRSF PIRSF002741 24 511 7.8E-107 T 25-04-2017 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 A4U88_RS07510 75d948a7090de06ee8b8738c50833419 511 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 426 1.3E-95 T 25-04-2017 IPR000914 Solute-binding protein family 5 domain A4U88_RS07510 75d948a7090de06ee8b8738c50833419 511 SUPERFAMILY SSF53850 30 510 2.92E-141 T 25-04-2017 A4U88_RS07510 75d948a7090de06ee8b8738c50833419 511 Gene3D G3DSA:3.40.190.10 129 280 1.5E-48 T 25-04-2017 A4U88_RS12355 b7faeb7473ffa68fe45d83064ff8e8da 163 Pfam PF14196 L-2-amino-thiazoline-4-carboxylic acid hydrolase 14 154 4.5E-41 T 25-04-2017 IPR026002 L-2-amino-thiazoline-4-carboxylic acid hydrolase A4U88_RS03260 4979d8797528ea40313593e6e65b9509 398 SUPERFAMILY SSF103473 12 395 1.44E-49 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS03260 4979d8797528ea40313593e6e65b9509 398 Pfam PF07690 Major Facilitator Superfamily 19 350 2.7E-34 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS03260 4979d8797528ea40313593e6e65b9509 398 Gene3D G3DSA:1.20.1250.20 219 396 8.9E-24 T 25-04-2017 A4U88_RS03260 4979d8797528ea40313593e6e65b9509 398 Gene3D G3DSA:1.20.1250.20 12 199 4.9E-22 T 25-04-2017 A4U88_RS21760 f6b23877d44e84e1543f578841f32fb1 453 Pfam PF00860 Permease family 30 413 4.6E-83 T 25-04-2017 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 A4U88_RS09470 d0530c89a0ce3f5c2b85e674d2790932 116 Pfam PF14302 Domain of unknown function (DUF4377) 40 113 3.1E-29 T 25-04-2017 IPR025485 Domain of unknown function DUF4377 A4U88_RS01310 47f3f4167637e8129e510102642d70c0 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 2.8E-35 T 25-04-2017 IPR007436 Protein of unknown function DUF485 A4U88_RS09945 ca9cf2a82b3188f28f1e5097f9291e66 146 SUPERFAMILY SSF74653 60 146 1.04E-18 T 25-04-2017 A4U88_RS09945 ca9cf2a82b3188f28f1e5097f9291e66 146 TIGRFAM TIGR02794 tolA_full: protein TolA 23 146 1.6E-24 T 25-04-2017 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 A4U88_RS09945 ca9cf2a82b3188f28f1e5097f9291e66 146 Gene3D G3DSA:3.30.1150.10 53 146 2.2E-34 T 25-04-2017 A4U88_RS09945 ca9cf2a82b3188f28f1e5097f9291e66 146 Pfam PF06519 TolA C-terminal 57 144 1.2E-27 T 25-04-2017 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 A4U88_RS19115 73f8e7da9edf02d6b6bdf4f33e2311c9 134 Pfam PF16358 RcsF lipoprotein 26 132 9.7E-55 T 25-04-2017 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 A4U88_RS19115 73f8e7da9edf02d6b6bdf4f33e2311c9 134 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 133 36.869 T 25-04-2017 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 A4U88_RS20160 dd71a3045eddd018da824ebdc8748536 222 Pfam PF07077 Protein of unknown function (DUF1345) 39 212 2.2E-56 T 25-04-2017 IPR009781 Protein of unknown function DUF1345 A4U88_RS11570 d34a81795434afdd106e2966c0840249 131 Pfam PF04248 Domain of unknown function (DUF427) 31 122 1.3E-30 T 25-04-2017 IPR007361 Domain of unknown function DUF427 A4U88_RS01815 82db12b0ade4bb79850ad9453acbf6bc 115 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 2.4E-22 T 25-04-2017 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like A4U88_RS01815 82db12b0ade4bb79850ad9453acbf6bc 115 Gene3D G3DSA:3.10.490.10 1 113 3.6E-40 T 25-04-2017 IPR013024 Butirosin biosynthesis, BtrG-like A4U88_RS01815 82db12b0ade4bb79850ad9453acbf6bc 115 SUPERFAMILY SSF110857 1 112 7.98E-33 T 25-04-2017 IPR013024 Butirosin biosynthesis, BtrG-like A4U88_RS18730 8bcb2de2501648e4f08deabbb4d4f19b 94 Hamap MF_00460 Protein RnfH [rnfH]. 4 94 26.207 T 25-04-2017 IPR005346 RnfH protein A4U88_RS18730 8bcb2de2501648e4f08deabbb4d4f19b 94 Gene3D G3DSA:3.10.20.280 3 88 2.6E-37 T 25-04-2017 IPR005346 RnfH protein A4U88_RS18730 8bcb2de2501648e4f08deabbb4d4f19b 94 Pfam PF03658 RnfH family Ubiquitin 4 86 1.1E-34 T 25-04-2017 IPR005346 RnfH protein A4U88_RS18730 8bcb2de2501648e4f08deabbb4d4f19b 94 SUPERFAMILY SSF54285 4 78 4.64E-26 T 25-04-2017 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp A4U88_RS08095 4b7e31d095477e095ab8abb0fe5e8c2b 83 SUPERFAMILY SSF143120 11 69 1.83E-6 T 25-04-2017 A4U88_RS08095 4b7e31d095477e095ab8abb0fe5e8c2b 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 11 74 4.9E-6 T 25-04-2017 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM A4U88_RS05500 5a829f17336e490432bb600bef4373a2 510 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 72 234 1.9E-19 T 25-04-2017 A4U88_RS18470 6025533df454ba6cd179a48195e0fd04 340 Pfam PF03824 High-affinity nickel-transport protein 75 326 1.2E-39 T 25-04-2017 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 A4U88_RS10825 fd46635a6b38e6f2d5c9472988e84f4b 79 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 7.7E-19 T 25-04-2017 IPR010710 Protein of unknown function DUF1289 A4U88_RS23260 0b8a170e47a63aaef9de9d354660b8cf 145 SUPERFAMILY SSF143422 4 130 1.7E-44 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS23260 0b8a170e47a63aaef9de9d354660b8cf 145 SMART SM01321 11 129 2.7E-42 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS23260 0b8a170e47a63aaef9de9d354660b8cf 145 Gene3D G3DSA:3.30.70.1290 4 133 2.4E-49 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS23260 0b8a170e47a63aaef9de9d354660b8cf 145 Pfam PF01797 Transposase IS200 like 12 129 5.0E-39 T 25-04-2017 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 A4U88_RS06960 49e96063635d65d5ae0328aac4da686a 181 SUPERFAMILY SSF54909 2 95 1.74E-19 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS06960 49e96063635d65d5ae0328aac4da686a 181 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 81 2.4E-8 T 25-04-2017 IPR007138 Antibiotic biosynthesis monooxygenase domain A4U88_RS06960 49e96063635d65d5ae0328aac4da686a 181 Gene3D G3DSA:3.30.70.900 8 87 8.7E-12 T 25-04-2017 A4U88_RS01820 fff438c9e382a7750567406b7076bc18 176 SUPERFAMILY SSF50324 6 173 7.85E-67 T 25-04-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 A4U88_RS01820 fff438c9e382a7750567406b7076bc18 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.994 T 25-04-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 A4U88_RS01820 fff438c9e382a7750567406b7076bc18 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 25-04-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 A4U88_RS01820 fff438c9e382a7750567406b7076bc18 176 Gene3D G3DSA:3.90.80.10 6 175 7.1E-61 T 25-04-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 A4U88_RS01820 fff438c9e382a7750567406b7076bc18 176 Pfam PF00719 Inorganic pyrophosphatase 18 172 6.7E-54 T 25-04-2017 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 A4U88_RS07500 5eb862b89bf4d14701ec979597a8e70e 318 Pfam PF01112 Asparaginase 4 317 4.6E-122 T 25-04-2017 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 A4U88_RS07500 5eb862b89bf4d14701ec979597a8e70e 318 SUPERFAMILY SSF56235 3 155 1.03E-97 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS07500 5eb862b89bf4d14701ec979597a8e70e 318 SUPERFAMILY SSF56235 182 310 1.03E-97 T 25-04-2017 IPR029055 Nucleophile aminohydrolases, N-terminal A4U88_RS05930 2886ddee31fd2a98f5947f95a0d174a1 339 Pfam PF06166 Protein of unknown function (DUF979) 6 338 1.7E-130 T 25-04-2017 IPR009323 Protein of unknown function DUF979 A4U88_RS06095 df60540c350ef4e43081ae871510d1b3 241 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 1.6E-53 T 25-04-2017 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 A4U88_RS06095 df60540c350ef4e43081ae871510d1b3 241 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 229 1.2E-64 T 25-04-2017 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 A4U88_RS11685 f036004bb52ae010d37c28815910f9d6 97 SUPERFAMILY SSF52833 5 88 6.71E-27 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS11685 f036004bb52ae010d37c28815910f9d6 97 Gene3D G3DSA:3.40.30.10 3 95 7.1E-41 T 25-04-2017 IPR012336 Thioredoxin-like fold A4U88_RS11685 f036004bb52ae010d37c28815910f9d6 97 Pfam PF10262 Rdx family 7 79 2.5E-30 T 25-04-2017 IPR011893 Selenoprotein, Rdx type A4U88_RS11685 f036004bb52ae010d37c28815910f9d6 97 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 7 78 4.8E-19 T 25-04-2017 IPR011893 Selenoprotein, Rdx type A4U88_RS02400 a8eda715fb070463dcacafc0a4dbd47a 67 Pfam PF04328 Protein of unknown function (DUF466) 5 67 4.5E-30 T 25-04-2017 IPR007423 Protein of unknown function DUF466 A4U88_RS21195 573bd2b1aaff31f2c54786c3d5fe027a 133 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 21 129 1.3E-18 T 25-04-2017 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III A4U88_RS22410 2bb41d3c78619b7b0be34324df3bbb1e 75 Hamap MF_00715 Protein SlyX [slyX]. 8 75 16.527 T 25-04-2017 IPR007236 SlyX A4U88_RS22410 2bb41d3c78619b7b0be34324df3bbb1e 75 Gene3D G3DSA:1.20.5.300 7 55 9.9E-19 T 25-04-2017 A4U88_RS22410 2bb41d3c78619b7b0be34324df3bbb1e 75 Pfam PF04102 SlyX 11 75 8.3E-23 T 25-04-2017 IPR007236 SlyX A4U88_RS17435 1b6841792caa8a165058ad6fd20a5fef 150 Pfam PF05232 Chlorhexidine efflux transporter 6 68 3.0E-26 T 25-04-2017 IPR007896 Chlorhexidine efflux transporter A4U88_RS17435 1b6841792caa8a165058ad6fd20a5fef 150 Pfam PF05232 Chlorhexidine efflux transporter 74 137 2.3E-24 T 25-04-2017 IPR007896 Chlorhexidine efflux transporter A4U88_RS11750 5e4e95d0a548f31516099ce62ed80c9a 425 Gene3D G3DSA:3.90.550.10 6 231 2.5E-29 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS11750 5e4e95d0a548f31516099ce62ed80c9a 425 Pfam PF00535 Glycosyl transferase family 2 8 166 4.5E-19 T 25-04-2017 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 A4U88_RS11750 5e4e95d0a548f31516099ce62ed80c9a 425 SUPERFAMILY SSF53448 4 238 1.69E-34 T 25-04-2017 IPR029044 Nucleotide-diphospho-sugar transferases A4U88_RS10740 5b8de115c89cf275adc39f2f7dfc01d4 458 Pfam PF01554 MatE 245 406 6.1E-36 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS10740 5b8de115c89cf275adc39f2f7dfc01d4 458 Pfam PF01554 MatE 17 177 1.5E-38 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS10740 5b8de115c89cf275adc39f2f7dfc01d4 458 PIRSF PIRSF006603 6 457 2.4E-58 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS10740 5b8de115c89cf275adc39f2f7dfc01d4 458 Hamap MF_00400 Multidrug resistance protein MdtK [mdtK]. 1 458 49.754 T 25-04-2017 IPR022913 Multidrug resistance protein MdtK A4U88_RS10740 5b8de115c89cf275adc39f2f7dfc01d4 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 423 4.2E-115 T 25-04-2017 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 A4U88_RS15360 46b334ba754b7c7efb3cd7d53ffdc951 71 Hamap MF_00525 Surface composition regulator [glgS]. 6 64 18.38 T 25-04-2017 IPR015065 Surface composition regulator A4U88_RS15360 46b334ba754b7c7efb3cd7d53ffdc951 71 ProDom PD054490 GLYCOGEN GLGS SYNTHESIS BIOSYNTHESIS DEPENDENT BIOSYNTHESIS RPOS 3D-STRUCTURE 14 59 0.004 T 25-04-2017 IPR015065 Surface composition regulator A4U88_RS15360 46b334ba754b7c7efb3cd7d53ffdc951 71 Gene3D G3DSA:1.20.970.20 11 70 1.3E-25 T 25-04-2017 IPR015065 Surface composition regulator A4U88_RS15360 46b334ba754b7c7efb3cd7d53ffdc951 71 SUPERFAMILY SSF109747 15 64 2.48E-8 T 25-04-2017 IPR015065 Surface composition regulator A4U88_RS15360 46b334ba754b7c7efb3cd7d53ffdc951 71 Pfam PF08971 Glycogen synthesis protein 6 69 1.6E-26 T 25-04-2017 IPR015065 Surface composition regulator A4U88_RS09400 838ac1362ef9dbe348fd4a8f5e99d9ce 248 Pfam PF00795 Carbon-nitrogen hydrolase 5 233 5.2E-29 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS09400 838ac1362ef9dbe348fd4a8f5e99d9ce 248 Gene3D G3DSA:3.60.110.10 4 233 4.9E-42 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS09400 838ac1362ef9dbe348fd4a8f5e99d9ce 248 SUPERFAMILY SSF56317 4 233 1.57E-47 T 25-04-2017 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 A4U88_RS02765 e73b7933bc32b3849235e10cf32911fe 119 Pfam PF05336 Domain of unknown function (DUF718) 10 116 2.0E-29 T 25-04-2017 IPR008000 Rhamnose/fucose mutarotase GO:0005737|GO:0016857 A4U88_RS02765 e73b7933bc32b3849235e10cf32911fe 119 SUPERFAMILY SSF54909 9 116 6.43E-28 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS21480 3e026f67fef31d69a53b0eed09bb1d3f 121 Pfam PF14272 Glycine-rich SFCGS 4 117 4.3E-62 T 25-04-2017 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 A4U88_RS21480 3e026f67fef31d69a53b0eed09bb1d3f 121 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 7.6E-68 T 25-04-2017 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 Pfam PF00561 alpha/beta hydrolase fold 98 470 5.5E-34 T 25-04-2017 IPR000073 Alpha/beta hydrolase fold-1 A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 SUPERFAMILY SSF53474 399 460 5.09E-20 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 SUPERFAMILY SSF53474 181 241 5.09E-20 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 SUPERFAMILY SSF53474 323 356 5.09E-20 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 SUPERFAMILY SSF53474 82 141 5.09E-20 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 Gene3D G3DSA:3.40.50.1820 57 146 1.5E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 Gene3D G3DSA:3.40.50.1820 186 310 1.5E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS12265 e7087b407cbdadcea6e7a07a00b0ae06 498 Gene3D G3DSA:3.40.50.1820 362 485 1.5E-46 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS04480 fdb547f92558c503dd02d2431f3bfa80 142 Gene3D G3DSA:3.40.50.620 4 136 6.3E-11 T 25-04-2017 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold A4U88_RS04480 fdb547f92558c503dd02d2431f3bfa80 142 SUPERFAMILY SSF52402 4 136 3.01E-10 T 25-04-2017 A4U88_RS23325 9a0bf01801be108842503da676770f2f 233 PIRSF PIRSF028451 4 227 6.7E-29 T 25-04-2017 IPR015996 Uncharacterised conserved protein UCP028451 A4U88_RS23325 9a0bf01801be108842503da676770f2f 233 Pfam PF09365 Conserved hypothetical protein (DUF2461) 13 218 3.7E-46 T 25-04-2017 IPR012808 Conserved hypothetical protein CHP02453 A4U88_RS17225 39aa8421ae08fbb943d4f108a5815aab 440 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 440 4.4E-146 T 25-04-2017 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) A4U88_RS17225 39aa8421ae08fbb943d4f108a5815aab 440 Gene3D G3DSA:2.40.160.60 26 440 7.4E-140 T 25-04-2017 A4U88_RS17225 39aa8421ae08fbb943d4f108a5815aab 440 SUPERFAMILY SSF56935 26 440 2.61E-112 T 25-04-2017 A4U88_RS23300 7d629d6bdf9848485af9fedc9016056e 263 Gene3D G3DSA:3.20.20.450 34 249 1.9E-28 T 25-04-2017 IPR001633 EAL domain A4U88_RS23300 7d629d6bdf9848485af9fedc9016056e 263 Pfam PF00563 EAL domain 27 243 3.7E-30 T 25-04-2017 IPR001633 EAL domain A4U88_RS23300 7d629d6bdf9848485af9fedc9016056e 263 SMART SM00052 18 248 2.5E-11 T 25-04-2017 IPR001633 EAL domain A4U88_RS23300 7d629d6bdf9848485af9fedc9016056e 263 SUPERFAMILY SSF141868 24 250 5.75E-33 T 25-04-2017 IPR001633 EAL domain A4U88_RS06870 ae38fc29aab2d4fffe1e24a42d1e7921 87 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 5 74 9.1E-22 T 25-04-2017 IPR022789 Antitoxin ParD A4U88_RS06870 ae38fc29aab2d4fffe1e24a42d1e7921 87 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 1 80 1.2E-16 T 25-04-2017 IPR022789 Antitoxin ParD A4U88_RS06870 ae38fc29aab2d4fffe1e24a42d1e7921 87 SUPERFAMILY SSF47598 4 44 3.11E-8 T 25-04-2017 IPR010985 Ribbon-helix-helix GO:0006355 A4U88_RS11360 9d0cfd9670b761a1346511ef18658721 247 Pfam PF01925 Sulfite exporter TauE/SafE 13 241 6.1E-30 T 25-04-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 A4U88_RS10390 3da5888c51ac662c0c2d08e2193084fe 182 PIRSF PIRSF030780 1 182 8.8E-96 T 25-04-2017 IPR016956 Inner membrane protein YdjM A4U88_RS10390 3da5888c51ac662c0c2d08e2193084fe 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 160 4.7E-35 T 25-04-2017 IPR007404 LexA-binding, inner membrane-associated putative hydrolase A4U88_RS07610 f9a6c8a6704ab294076dfdf1c65ef699 404 Gene3D G3DSA:1.20.1250.20 211 391 1.5E-13 T 25-04-2017 A4U88_RS07610 f9a6c8a6704ab294076dfdf1c65ef699 404 Gene3D G3DSA:1.20.1250.20 11 179 1.1E-23 T 25-04-2017 A4U88_RS07610 f9a6c8a6704ab294076dfdf1c65ef699 404 SUPERFAMILY SSF103473 10 392 3.53E-46 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS07610 f9a6c8a6704ab294076dfdf1c65ef699 404 Pfam PF07690 Major Facilitator Superfamily 12 347 3.3E-30 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS01325 32599cd6cc3e5853d5daa13ccc0fcda3 447 Pfam PF00668 Condensation domain 11 308 4.6E-27 T 25-04-2017 IPR001242 Condensation domain A4U88_RS01325 32599cd6cc3e5853d5daa13ccc0fcda3 447 SUPERFAMILY SSF52777 13 191 1.22E-23 T 25-04-2017 A4U88_RS01325 32599cd6cc3e5853d5daa13ccc0fcda3 447 SUPERFAMILY SSF52777 194 433 1.09E-24 T 25-04-2017 A4U88_RS21580 accde0a8f57bafc8841ad4da6242dade 254 PIRSF PIRSF001273 3 254 5.3E-55 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS21580 accde0a8f57bafc8841ad4da6242dade 254 Gene3D G3DSA:3.30.428.30 24 252 8.7E-74 T 25-04-2017 A4U88_RS21580 accde0a8f57bafc8841ad4da6242dade 254 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 26 251 8.8E-74 T 25-04-2017 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 A4U88_RS21580 accde0a8f57bafc8841ad4da6242dade 254 SUPERFAMILY SSF54197 26 251 2.84E-60 T 25-04-2017 IPR011146 HIT-like domain GO:0003824 A4U88_RS18215 92ba62734b2ca8847b2649d9f7fd60ad 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 6.4E-103 T 25-04-2017 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 A4U88_RS18215 92ba62734b2ca8847b2649d9f7fd60ad 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.9E-94 T 25-04-2017 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 A4U88_RS18215 92ba62734b2ca8847b2649d9f7fd60ad 266 Gene3D G3DSA:3.40.1190.20 6 263 2.4E-101 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS18215 92ba62734b2ca8847b2649d9f7fd60ad 266 SUPERFAMILY SSF53613 5 265 4.52E-81 T 25-04-2017 IPR029056 Ribokinase-like A4U88_RS09685 7d9698e8504485edf2936cf561ecaad0 92 Pfam PF10762 Protein of unknown function (DUF2583) 1 88 3.1E-45 T 25-04-2017 IPR019698 Protein of unknown function DUF2583 A4U88_RS09580 3c79cb1379ef3a9e7243484ea6a4341f 204 Pfam PF00857 Isochorismatase family 17 190 3.4E-43 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS09580 3c79cb1379ef3a9e7243484ea6a4341f 204 PRINTS PR01398 Isochorismatase signature 49 66 3.3E-7 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS09580 3c79cb1379ef3a9e7243484ea6a4341f 204 PRINTS PR01398 Isochorismatase signature 99 121 3.3E-7 T 25-04-2017 IPR016291 Isochorismatase GO:0008908 MetaCyc: PWY-5901 A4U88_RS09580 3c79cb1379ef3a9e7243484ea6a4341f 204 SUPERFAMILY SSF52499 13 197 2.88E-59 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS09580 3c79cb1379ef3a9e7243484ea6a4341f 204 Gene3D G3DSA:3.40.50.850 4 197 6.0E-64 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS19955 b63baaebe505a90873e5280124fbf41d 107 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 7 92 2.5E-21 T 25-04-2017 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system A4U88_RS17180 e62d721952d35ee2871d3b24c39da7cd 268 Pfam PF01925 Sulfite exporter TauE/SafE 14 249 1.3E-45 T 25-04-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 A4U88_RS19560 df060f116e5af5da17e4c325f3a04bbd 144 Gene3D G3DSA:3.40.50.510 1 130 1.1E-38 T 25-04-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 A4U88_RS19560 df060f116e5af5da17e4c325f3a04bbd 144 Pfam PF03610 PTS system fructose IIA component 3 116 1.6E-27 T 25-04-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 A4U88_RS19560 df060f116e5af5da17e4c325f3a04bbd 144 SUPERFAMILY SSF53062 1 126 4.06E-33 T 25-04-2017 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 A4U88_RS07075 322444f669ef52112e8630428952aa9a 110 SUPERFAMILY SSF69118 7 107 5.5E-27 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS07075 322444f669ef52112e8630428952aa9a 110 Pfam PF02627 Carboxymuconolactone decarboxylase family 17 100 1.3E-20 T 25-04-2017 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 A4U88_RS07075 322444f669ef52112e8630428952aa9a 110 Gene3D G3DSA:1.20.1290.10 8 102 7.9E-23 T 25-04-2017 IPR029032 AhpD-like Reactome: R-HSA-5628897 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 Pfam PF02108 Flagellar assembly protein FliH 101 225 3.8E-39 T 25-04-2017 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 121 138 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 190 206 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 8 27 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 162 189 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 139 161 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 101 120 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 59 81 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 82 100 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14350 def4546bb8759b89e72054292c7925a0 234 PRINTS PR01003 Flagellar assembly protein FliH signature 207 232 1.6E-82 T 25-04-2017 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 A4U88_RS14105 b567f5220e5b06519e41fd26d422e62a 432 Pfam PF01943 Polysaccharide biosynthesis protein 6 272 2.3E-18 T 25-04-2017 IPR002797 Polysaccharide biosynthesis protein GO:0016020 A4U88_RS14105 b567f5220e5b06519e41fd26d422e62a 432 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 324 409 9.4E-8 T 25-04-2017 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 214 237 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 701 721 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 295 316 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 548 568 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 378 399 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 511 530 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 82 103 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 PRINTS PR01440 Cellulose synthase subunit B signature 172 193 9.3E-35 T 25-04-2017 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 A4U88_RS00485 8d30974c7bd1bc62a80962b2154772d4 762 Pfam PF03170 Bacterial cellulose synthase subunit 54 662 4.3E-223 T 25-04-2017 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 A4U88_RS14060 aa5ef17709b4eab8356f92052e9a6ee5 240 Pfam PF02613 Nitrate reductase delta subunit 51 158 1.4E-12 T 25-04-2017 IPR020945 DMSO/Nitrate reductase chaperone A4U88_RS14060 aa5ef17709b4eab8356f92052e9a6ee5 240 SUPERFAMILY SSF89155 3 164 9.63E-32 T 25-04-2017 IPR020945 DMSO/Nitrate reductase chaperone A4U88_RS14060 aa5ef17709b4eab8356f92052e9a6ee5 240 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 9 161 1.0E-44 T 25-04-2017 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 A4U88_RS08075 57d012833c09ea17f3b94c86b036ffed 281 Gene3D G3DSA:1.10.3720.10 11 271 1.4E-59 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08075 57d012833c09ea17f3b94c86b036ffed 281 SUPERFAMILY SSF161098 8 268 7.46E-52 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS08075 57d012833c09ea17f3b94c86b036ffed 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 269 9.8E-15 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS16905 ffda02dc3a5effa97a3f638c368d889f 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 36.642 T 25-04-2017 IPR007334 Uncharacterised protein family UPF0208 A4U88_RS16905 ffda02dc3a5effa97a3f638c368d889f 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 7.3E-61 T 25-04-2017 IPR007334 Uncharacterised protein family UPF0208 A4U88_RS15160 df188bda6b085b95469cef080997cab9 40 Pfam PF06528 Phage P2 GpE 3 37 9.2E-19 T 25-04-2017 IPR009493 Burkholderia phage phiE202, Gp27 A4U88_RS23445 15b15bad2f607f2a84b68792400f4dca 210 Gene3D G3DSA:1.10.357.10 2 193 2.2E-34 T 25-04-2017 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 A4U88_RS23445 15b15bad2f607f2a84b68792400f4dca 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 58 2.2E-7 T 25-04-2017 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 A4U88_RS23445 15b15bad2f607f2a84b68792400f4dca 210 SUPERFAMILY SSF46689 3 77 2.32E-12 T 25-04-2017 IPR009057 Homeodomain-like GO:0003677 A4U88_RS21070 3c736d956c24cc2c35353962ad29f20e 238 Pfam PF04982 HPP family 58 177 8.7E-39 T 25-04-2017 IPR007065 HPP A4U88_RS04590 3063b551179bb64b5258a894b0b5d991 185 SUPERFAMILY SSF53335 15 165 9.44E-13 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04590 3063b551179bb64b5258a894b0b5d991 185 Gene3D G3DSA:3.40.50.150 38 162 7.9E-8 T 25-04-2017 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase A4U88_RS04590 3063b551179bb64b5258a894b0b5d991 185 Pfam PF00398 Ribosomal RNA adenine dimethylase 35 172 6.2E-5 T 25-04-2017 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm A4U88_RS17975 2fbcfd636a6cf9a463e9929b3a0aabe0 82 Pfam PF04226 Transglycosylase associated protein 33 81 4.0E-16 T 25-04-2017 IPR007341 Transglycosylase-associated protein GO:0016021 A4U88_RS00785 e605ac00b42a7a2392aff79cadc554fd 219 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 1.4E-61 T 25-04-2017 IPR003744 Protein of unknown function DUF165 A4U88_RS00785 e605ac00b42a7a2392aff79cadc554fd 219 Pfam PF02592 Putative vitamin uptake transporter 43 199 2.9E-35 T 25-04-2017 IPR003744 Protein of unknown function DUF165 A4U88_RS20740 8ca11075d3208c80cddd1449689dee9e 508 Pfam PF03806 AbgT putative transporter family 15 505 4.0E-188 T 25-04-2017 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 A4U88_RS15265 8b1d3a05aaf09f727ce3cbc85fc359d4 95 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 6 95 4.0E-46 T 25-04-2017 IPR009359 Phenylacetic acid degradation B A4U88_RS15265 8b1d3a05aaf09f727ce3cbc85fc359d4 95 PIRSF PIRSF030200 1 95 1.3E-41 T 25-04-2017 IPR009359 Phenylacetic acid degradation B A4U88_RS15265 8b1d3a05aaf09f727ce3cbc85fc359d4 95 Pfam PF06243 Phenylacetic acid degradation B 5 91 2.7E-39 T 25-04-2017 IPR009359 Phenylacetic acid degradation B A4U88_RS06495 efc047dd0bc7095ae284cb345a562e49 314 Pfam PF12146 Serine aminopeptidase, S33 49 282 4.9E-25 T 25-04-2017 IPR022742 Serine aminopeptidase, S33 A4U88_RS06495 efc047dd0bc7095ae284cb345a562e49 314 Gene3D G3DSA:3.40.50.1820 36 297 1.9E-28 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS06495 efc047dd0bc7095ae284cb345a562e49 314 SUPERFAMILY SSF53474 37 292 2.24E-28 T 25-04-2017 IPR029058 Alpha/Beta hydrolase fold A4U88_RS01420 629af5e15a1e18a446ca5aeab755ab2b 185 Gene3D G3DSA:2.60.40.1090 30 185 1.1E-46 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01420 629af5e15a1e18a446ca5aeab755ab2b 185 SUPERFAMILY SSF49401 31 185 1.59E-39 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS01420 629af5e15a1e18a446ca5aeab755ab2b 185 Pfam PF00419 Fimbrial protein 33 185 3.8E-17 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS22670 63194ac2ffc84c854d8e17fc5374b612 179 Pfam PF05137 Fimbrial assembly protein (PilN) 100 174 5.3E-10 T 25-04-2017 IPR007813 Fimbrial assembly PilN A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 53 73 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 148 171 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 192 213 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 278 296 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 214 235 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 172 190 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 258 277 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 6 26 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 296 313 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 112 137 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 28 51 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 236 257 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 PRINTS PR01002 Flagellar protein FlgJ signature 74 96 8.4E-109 T 25-04-2017 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 163 296 2.4E-20 T 25-04-2017 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 Pfam PF10135 Rod binding protein 50 96 3.8E-17 T 25-04-2017 IPR019301 Flagellar protein FlgJ, N-terminal A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 SMART SM00047 143 307 2.5E-46 T 25-04-2017 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 A4U88_RS14420 a9c4bcb689c7e50b876b46ad84aaa20f 314 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 12 296 2.4E-111 T 25-04-2017 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 A4U88_RS15915 ae3eda24deae60a25f3c5695b7e2587b 314 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 212 2.3E-15 T 25-04-2017 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 A4U88_RS15915 ae3eda24deae60a25f3c5695b7e2587b 314 SUPERFAMILY SSF51735 4 310 1.65E-34 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS15915 ae3eda24deae60a25f3c5695b7e2587b 314 Gene3D G3DSA:3.40.50.720 4 243 3.2E-21 T 25-04-2017 IPR016040 NAD(P)-binding domain A4U88_RS04585 6e11e4e2db9ca3ec9baddc276353a27e 94 SUPERFAMILY SSF159871 4 94 3.01E-22 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS04585 6e11e4e2db9ca3ec9baddc276353a27e 94 Gene3D G3DSA:3.30.1660.10 28 94 3.2E-20 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS04585 6e11e4e2db9ca3ec9baddc276353a27e 94 Pfam PF07338 Protein of unknown function (DUF1471) 38 94 2.4E-20 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS15570 3de7dcdb5b0ed1e9a4f7ad4f69954545 185 PIRSF PIRSF028301 2 177 2.7E-62 T 25-04-2017 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 A4U88_RS15570 3de7dcdb5b0ed1e9a4f7ad4f69954545 185 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 13 163 2.1E-54 T 25-04-2017 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 A4U88_RS15570 3de7dcdb5b0ed1e9a4f7ad4f69954545 185 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 164 7.6E-55 T 25-04-2017 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 A4U88_RS22555 80f39fbbe6a16e6c2b1da2881c2fd5ba 561 Pfam PF06580 Histidine kinase 371 448 1.2E-24 T 25-04-2017 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 A4U88_RS22555 80f39fbbe6a16e6c2b1da2881c2fd5ba 561 Pfam PF07694 5TMR of 5TMR-LYT 28 196 2.6E-55 T 25-04-2017 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 A4U88_RS22555 80f39fbbe6a16e6c2b1da2881c2fd5ba 561 Gene3D G3DSA:3.30.565.10 420 558 2.4E-10 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS22555 80f39fbbe6a16e6c2b1da2881c2fd5ba 561 SUPERFAMILY SSF55781 234 355 4.61E-6 T 25-04-2017 IPR029016 GAF domain-like A4U88_RS22555 80f39fbbe6a16e6c2b1da2881c2fd5ba 561 SUPERFAMILY SSF55874 424 556 1.92E-11 T 25-04-2017 IPR003594 Histidine kinase-like ATPase, C-terminal domain A4U88_RS22555 80f39fbbe6a16e6c2b1da2881c2fd5ba 561 SMART SM00065 218 365 0.0048 T 25-04-2017 IPR003018 GAF domain GO:0005515 A4U88_RS14560 0318577bcd303a20a7054825e74069ab 296 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 25-04-2017 IPR000540 Flagellar motor protein MotA, conserved site A4U88_RS14560 0318577bcd303a20a7054825e74069ab 296 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 2 281 2.6E-118 T 25-04-2017 IPR022522 Flagellar motor stator, MotA A4U88_RS14560 0318577bcd303a20a7054825e74069ab 296 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 239 2.3E-11 T 25-04-2017 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 A4U88_RS21550 f06ab7319a2c32d91c6f768238b5c022 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 24.114 T 25-04-2017 IPR012451 Protein of unknown function DUF1656 A4U88_RS21550 f06ab7319a2c32d91c6f768238b5c022 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 3.0E-20 T 25-04-2017 IPR012451 Protein of unknown function DUF1656 A4U88_RS17935 77fa2849416371a79331805db4fd2b5f 205 Pfam PF01810 LysE type translocator 15 201 9.0E-23 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS00595 dde6b5afa276ba9cf419a5c3273a39d7 455 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 447 39.275 T 25-04-2017 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 A4U88_RS00595 dde6b5afa276ba9cf419a5c3273a39d7 455 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 440 4.4E-260 T 25-04-2017 A4U88_RS22090 a1417cba79aaf217bbdb5d447887b0f0 584 PIRSF PIRSF000719 1 575 1.6E-290 T 25-04-2017 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 A4U88_RS22090 a1417cba79aaf217bbdb5d447887b0f0 584 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 9.4E-254 T 25-04-2017 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 A4U88_RS22090 a1417cba79aaf217bbdb5d447887b0f0 584 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 8 572 0.0 T 25-04-2017 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 A4U88_RS22090 a1417cba79aaf217bbdb5d447887b0f0 584 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 44.385 T 25-04-2017 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 A4U88_RS19900 0d504c4fce928dc54ce6aac2b0d81753 224 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 23 224 3.3E-73 T 25-04-2017 IPR005744 Hly-III GO:0016021|GO:0019835 A4U88_RS19900 0d504c4fce928dc54ce6aac2b0d81753 224 Pfam PF03006 Haemolysin-III related 20 217 9.4E-40 T 25-04-2017 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 A4U88_RS06670 57dbfcf878f81ac662063fe72d7b35a9 394 Gene3D G3DSA:1.20.1250.20 214 384 4.2E-8 T 25-04-2017 A4U88_RS06670 57dbfcf878f81ac662063fe72d7b35a9 394 Gene3D G3DSA:1.20.1250.20 14 192 2.8E-27 T 25-04-2017 A4U88_RS06670 57dbfcf878f81ac662063fe72d7b35a9 394 SUPERFAMILY SSF103473 10 384 1.7E-48 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS06670 57dbfcf878f81ac662063fe72d7b35a9 394 Pfam PF07690 Major Facilitator Superfamily 22 353 4.6E-29 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS06940 4241c71b7e5bdfd29d64c5fe47936a85 60 Pfam PF06568 Domain of unknown function (DUF1127) 15 49 5.5E-11 T 25-04-2017 IPR009506 Protein of unknown function DUF1127 A4U88_RS15700 5097b9b99699bdabc0fb27b5d46386c6 97 ProDom PD065638 YGHW CYTOPLASMIC STY3323 1 91 2.0E-20 T 25-04-2017 IPR022574 Protein of unknown function DUF2623 A4U88_RS15700 5097b9b99699bdabc0fb27b5d46386c6 97 Pfam PF11115 Protein of unknown function (DUF2623) 3 93 7.2E-37 T 25-04-2017 IPR022574 Protein of unknown function DUF2623 A4U88_RS14745 6368cf2f5a515924c1249e04b41d9494 356 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 33 333 6.0E-103 T 25-04-2017 IPR010732 Type VI secretion, TssG-like A4U88_RS14745 6368cf2f5a515924c1249e04b41d9494 356 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 33 334 8.8E-97 T 25-04-2017 IPR010732 Type VI secretion, TssG-like A4U88_RS06765 a5611ff717203746fc92b6a34dd5ee8b 290 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 42 264 1.5E-51 T 25-04-2017 IPR018713 Domain of unknown function DUF2236 A4U88_RS21530 4284dd98b452ee4035e3646ebc38aeb7 99 SUPERFAMILY SSF52038 1 88 7.46E-28 T 25-04-2017 IPR000468 Barstar (barnase inhibitor) A4U88_RS21530 4284dd98b452ee4035e3646ebc38aeb7 99 Gene3D G3DSA:3.30.370.10 1 85 1.4E-22 T 25-04-2017 IPR000468 Barstar (barnase inhibitor) A4U88_RS21530 4284dd98b452ee4035e3646ebc38aeb7 99 Pfam PF01337 Barstar (barnase inhibitor) 6 79 3.7E-11 T 25-04-2017 IPR000468 Barstar (barnase inhibitor) A4U88_RS22860 ebacfb39d9ad6a1ff4b171a80f68a5eb 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 191 4.8E-31 T 25-04-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 A4U88_RS22860 ebacfb39d9ad6a1ff4b171a80f68a5eb 197 Pfam PF01914 MarC family integral membrane protein 2 194 6.3E-59 T 25-04-2017 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 A4U88_RS16535 62b854eefbcdd391c432b39e9e293922 201 Gene3D G3DSA:3.10.20.30 10 89 3.2E-4 T 25-04-2017 IPR012675 Beta-grasp domain A4U88_RS15580 d08bdc543f0d39e3322292ad572a1682 144 Pfam PF07681 DoxX 20 98 6.9E-17 T 25-04-2017 IPR032808 DoxX family A4U88_RS10320 6866f138770e6d5fbb1d579a60ae563f 346 Pfam PF01032 FecCD transport family 27 341 2.6E-86 T 25-04-2017 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 A4U88_RS10320 6866f138770e6d5fbb1d579a60ae563f 346 Gene3D G3DSA:1.10.3470.10 13 345 4.1E-97 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10320 6866f138770e6d5fbb1d579a60ae563f 346 SUPERFAMILY SSF81345 8 341 3.4E-78 T 25-04-2017 IPR029022 ABC transporter, BtuC-like A4U88_RS10405 00f4612e6b5354f8b4d39e688037c78d 186 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 180 2.0E-77 T 25-04-2017 A4U88_RS10405 00f4612e6b5354f8b4d39e688037c78d 186 Pfam PF14002 YniB-like protein 15 180 9.0E-82 T 25-04-2017 IPR025229 YniB-like protein A4U88_RS22890 d2846f8ca7a5d71ad1555dfeaada73d4 392 SUPERFAMILY SSF56266 50 381 1.05E-61 T 25-04-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS22890 d2846f8ca7a5d71ad1555dfeaada73d4 392 Gene3D G3DSA:3.60.70.12 49 387 1.9E-79 T 25-04-2017 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 A4U88_RS22890 d2846f8ca7a5d71ad1555dfeaada73d4 392 Pfam PF03576 Peptidase family S58 57 383 1.3E-65 T 25-04-2017 IPR005321 Peptidase S58, DmpA A4U88_RS16215 4d7eea509db675ab744abd1d0b2bcd0e 355 Pfam PF13515 Fusaric acid resistance protein-like 33 158 1.7E-14 T 25-04-2017 A4U88_RS17380 23b3a211f59c4c0f1495b12c9d173867 174 SUPERFAMILY SSF81342 3 174 9.42E-29 T 25-04-2017 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 A4U88_RS17380 23b3a211f59c4c0f1495b12c9d173867 174 Pfam PF01292 Prokaryotic cytochrome b561 4 173 1.2E-24 T 25-04-2017 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 A4U88_RS09295 14098970ded50e961396ef4ed4c76787 288 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 28 282 4.6E-92 T 25-04-2017 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 A4U88_RS09295 14098970ded50e961396ef4ed4c76787 288 Gene3D G3DSA:3.90.1200.10 77 273 6.5E-26 T 25-04-2017 A4U88_RS09295 14098970ded50e961396ef4ed4c76787 288 SUPERFAMILY SSF56112 8 282 1.46E-39 T 25-04-2017 IPR011009 Protein kinase-like domain A4U88_RS09295 14098970ded50e961396ef4ed4c76787 288 Pfam PF01636 Phosphotransferase enzyme family 47 235 3.5E-15 T 25-04-2017 IPR002575 Aminoglycoside phosphotransferase A4U88_RS06810 90eb13b4fd9b54741f4efcfdae1af99a 154 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.2E-25 T 25-04-2017 IPR009921 Domain of unknown function DUF1456 A4U88_RS06810 90eb13b4fd9b54741f4efcfdae1af99a 154 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 6.6E-26 T 25-04-2017 IPR009921 Domain of unknown function DUF1456 A4U88_RS06500 acdeaf1df0147a1c4edac9fea9bc639b 306 PIRSF PIRSF016660 1 305 3.7E-125 T 25-04-2017 IPR008526 Inner membrane protein YedI A4U88_RS06500 acdeaf1df0147a1c4edac9fea9bc639b 306 Pfam PF05661 Protein of unknown function (DUF808) 4 293 3.3E-117 T 25-04-2017 IPR008526 Inner membrane protein YedI A4U88_RS18850 a43bd23b4ba9f163a15b45ba3853b8c7 76 Pfam PF06902 Divergent 4Fe-4S mono-cluster 13 76 2.9E-27 T 25-04-2017 IPR010693 Divergent 4Fe-4S mono-cluster A4U88_RS18000 29c5f4df5850148bb9721297fea8ddf2 183 Gene3D G3DSA:3.40.630.30 4 165 1.6E-41 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18000 29c5f4df5850148bb9721297fea8ddf2 183 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 4.4E-22 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS18000 29c5f4df5850148bb9721297fea8ddf2 183 SUPERFAMILY SSF55729 4 164 1.62E-40 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS16545 e2fb5bf00ff6e082e47df1202eb2d145 250 TIGRFAM TIGR01600 phage_tail_L: phage minor tail protein L 6 247 3.1E-55 T 25-04-2017 IPR006487 Bacteriophage lambda, GpL, minor tail A4U88_RS16545 e2fb5bf00ff6e082e47df1202eb2d145 250 Pfam PF05100 Phage minor tail protein L 24 247 1.1E-74 T 25-04-2017 IPR006487 Bacteriophage lambda, GpL, minor tail A4U88_RS04630 8177cdfbbb9d9a508710c6906ec2533c 42 Pfam PF16362 YaiA protein 6 39 1.9E-14 T 25-04-2017 IPR032303 YaiA protein A4U88_RS06985 0b1340dd1dd57c7225cefac3b84892c4 352 Pfam PF00487 Fatty acid desaturase 54 286 1.1E-33 T 25-04-2017 IPR005804 Fatty acid desaturase domain GO:0006629 A4U88_RS16035 ba41b34f3fba82b5b842780304e96651 117 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 106 3.6E-21 T 25-04-2017 IPR009241 Toxin HigB-like A4U88_RS17660 2c581b4128c5697fb3badc95719565cf 299 SUPERFAMILY SSF54909 1 297 8.58E-90 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS17660 2c581b4128c5697fb3badc95719565cf 299 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 295 7.6E-86 T 25-04-2017 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 A4U88_RS17660 2c581b4128c5697fb3badc95719565cf 299 Pfam PF04261 Dyp-type peroxidase family 5 294 6.7E-92 T 25-04-2017 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 A4U88_RS01065 0858f490970ba5c75f11535846f1abe3 177 SUPERFAMILY SSF52218 1 170 1.76E-32 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS01065 0858f490970ba5c75f11535846f1abe3 177 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 25-04-2017 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 A4U88_RS01065 0858f490970ba5c75f11535846f1abe3 177 Pfam PF12724 Flavodoxin domain 4 151 1.9E-57 T 25-04-2017 IPR026816 Flavodoxin domain A4U88_RS01065 0858f490970ba5c75f11535846f1abe3 177 Gene3D G3DSA:3.40.50.360 2 72 6.2E-24 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS01065 0858f490970ba5c75f11535846f1abe3 177 Gene3D G3DSA:3.40.50.360 104 172 6.2E-24 T 25-04-2017 IPR029039 Flavoprotein-like domain A4U88_RS01250 f27f1104c3a6bf7200ebf45043c5dd1e 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 6.8E-81 T 25-04-2017 IPR007338 Protein of unknown function DUF416 A4U88_RS01250 f27f1104c3a6bf7200ebf45043c5dd1e 196 Gene3D G3DSA:1.20.1590.10 1 194 1.5E-90 T 25-04-2017 IPR023381 YP001051499.1-like domain A4U88_RS00275 86a33998107adf47c7e6ca06c1cdf67a 183 Pfam PF00857 Isochorismatase family 4 141 5.5E-21 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS00275 86a33998107adf47c7e6ca06c1cdf67a 183 SUPERFAMILY SSF52499 2 180 6.15E-34 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS00275 86a33998107adf47c7e6ca06c1cdf67a 183 Gene3D G3DSA:3.40.50.850 1 182 3.2E-35 T 25-04-2017 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 A4U88_RS11465 4b0af628171391c3ff506156e071f054 428 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 201 285 5.6E-27 T 25-04-2017 IPR022385 Rhs repeat-associated core GO:0097264 A4U88_RS11465 4b0af628171391c3ff506156e071f054 428 Pfam PF03527 RHS protein 174 209 2.2E-14 T 25-04-2017 IPR001826 RHS protein A4U88_RS13865 2f292dd712856ddddeada277840993bf 91 Pfam PF13974 YebO-like protein 16 91 1.6E-26 T 25-04-2017 IPR025594 YebO-like protein A4U88_RS11920 640c65bc08e4a73847373f26775c027f 126 SUPERFAMILY SSF54427 8 123 1.28E-13 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS11920 640c65bc08e4a73847373f26775c027f 126 Pfam PF14534 Domain of unknown function (DUF4440) 11 116 2.7E-16 T 25-04-2017 IPR027843 Domain of unknown function DUF4440 A4U88_RS11920 640c65bc08e4a73847373f26775c027f 126 Gene3D G3DSA:3.10.450.50 11 123 2.1E-12 T 25-04-2017 IPR032710 NTF2-like domain A4U88_RS02000 4e509d850826ebcbec0329ffea4c9c65 404 Pfam PF04143 Sulphur transport 4 160 2.1E-24 T 25-04-2017 IPR007272 Sulphur transport domain A4U88_RS02000 4e509d850826ebcbec0329ffea4c9c65 404 Pfam PF04143 Sulphur transport 237 392 5.1E-25 T 25-04-2017 IPR007272 Sulphur transport domain A4U88_RS04570 24ffdf1039e6610b0f7a3ed2b9c7d5dd 453 Pfam PF13449 Esterase-like activity of phytase 53 391 4.2E-53 T 25-04-2017 IPR027372 Phytase-like domain A4U88_RS00435 630edbca22f07cea31dea19d1610c82d 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 1.7E-47 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00435 630edbca22f07cea31dea19d1610c82d 339 SUPERFAMILY SSF161098 89 160 5.4E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00435 630edbca22f07cea31dea19d1610c82d 339 SUPERFAMILY SSF161098 200 322 5.4E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00435 630edbca22f07cea31dea19d1610c82d 339 Gene3D G3DSA:1.10.3720.10 203 332 1.4E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS00435 630edbca22f07cea31dea19d1610c82d 339 Gene3D G3DSA:1.10.3720.10 88 163 1.4E-22 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS03150 3fad5206c50f04f72d81fc92543a6499 266 Pfam PF06738 Putative threonine/serine exporter 21 260 3.9E-66 T 25-04-2017 IPR010619 Putative threonine/serine exporter A4U88_RS19245 5f983911a52e18147dcbea1e60a882c4 280 Pfam PF01148 Cytidylyltransferase family 4 277 6.9E-73 T 25-04-2017 A4U88_RS19245 5f983911a52e18147dcbea1e60a882c4 280 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 237 263 - T 25-04-2017 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981 A4U88_RS14370 ab8bbaa3ce6600c96f4cf1a202f1c88c 161 Pfam PF03748 Flagellar basal body-associated protein FliL 59 159 3.8E-22 T 25-04-2017 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 A4U88_RS22480 f6345c5a052f75a55f5e5a16011f11e7 200 Pfam PF01810 LysE type translocator 16 190 3.3E-18 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS00980 a10ba719e70999293632f542e96dfe78 202 Pfam PF02036 SCP-2 sterol transfer family 15 113 2.5E-19 T 25-04-2017 IPR003033 SCP2 sterol-binding domain A4U88_RS00980 a10ba719e70999293632f542e96dfe78 202 SUPERFAMILY SSF55718 13 117 4.41E-7 T 25-04-2017 IPR003033 SCP2 sterol-binding domain A4U88_RS19700 97ade274ba0df1698f0b06bacf3c6d3e 527 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 3 525 2.7E-125 T 25-04-2017 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 A4U88_RS19700 97ade274ba0df1698f0b06bacf3c6d3e 527 Pfam PF02652 L-lactate permease 4 524 4.8E-135 T 25-04-2017 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 A4U88_RS08080 b22d7e9b3adb79d2095d3382fb4177db 161 Pfam PF10767 Protein of unknown function (DUF2593) 17 156 1.0E-63 T 25-04-2017 IPR019703 Protein of unknown function DUF2593 A4U88_RS12920 0717b74ab87f9104e07e69fdfd160d4b 267 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 10 260 2.6E-33 T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS12920 0717b74ab87f9104e07e69fdfd160d4b 267 SUPERFAMILY SSF52518 3 265 4.91E-69 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12920 0717b74ab87f9104e07e69fdfd160d4b 267 Gene3D G3DSA:3.40.50.970 2 266 3.9E-79 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS07525 075bf4a68283930da5f90e829edd9b32 80 Pfam PF07362 Post-segregation antitoxin CcdA 10 80 2.7E-25 T 25-04-2017 IPR009956 Post-segregation antitoxin CcdA A4U88_RS09315 e0fc98cf9328a1ae3207e4ed0e656464 174 Pfam PF05433 Glycine zipper 2TM domain 69 109 3.3E-11 T 25-04-2017 IPR008816 Glycine zipper 2TM domain GO:0019867 A4U88_RS17370 273bfefe5a5b296aa9f4f70aedc8efd9 818 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 22 818 3.9E-269 T 25-04-2017 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:0022891|GO:0042710 A4U88_RS17370 273bfefe5a5b296aa9f4f70aedc8efd9 818 SUPERFAMILY SSF56935 558 715 1.45E-5 T 25-04-2017 A4U88_RS17370 273bfefe5a5b296aa9f4f70aedc8efd9 818 SUPERFAMILY SSF48452 405 513 3.8E-5 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS15155 a8907be972c75b93fcf328419c82e0c9 108 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 18 96 2.9E-10 T 25-04-2017 IPR019289 Bacteriophage tail protein Gp41, putative A4U88_RS18310 351d7308ddf18eb672994c4a82351f96 355 SUPERFAMILY SSF46785 146 217 7.34E-5 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS18310 351d7308ddf18eb672994c4a82351f96 355 Gene3D G3DSA:1.10.10.10 148 204 3.6E-5 T 25-04-2017 IPR011991 Winged helix-turn-helix DNA-binding domain A4U88_RS14150 885ab7411869084b6f7bf0ee30a644c0 503 Pfam PF11924 Invasin beta-domain of outer membrane 82 360 2.7E-92 T 25-04-2017 IPR024519 Invasin beta-domain of outer membrane A4U88_RS11205 2b70c4c972d903b798554590896d51d7 99 Pfam PF06649 Protein of unknown function (DUF1161) 23 76 5.9E-27 T 25-04-2017 IPR010595 Protein of unknown function DUF1161 A4U88_RS11205 2b70c4c972d903b798554590896d51d7 99 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 3 76 6.0E-25 T 25-04-2017 IPR010595 Protein of unknown function DUF1161 A4U88_RS10445 a15bb1a8ee8bc22eeed16f5268f7945b 241 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 60 214 3.3E-41 T 25-04-2017 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 A4U88_RS10910 3b56f6985f4ba429e98cf524fc5ed2a9 87 Pfam PF11656 YjbD family (DUF3811) 1 87 3.0E-36 T 25-04-2017 IPR020317 Uncharacterised protein family YjbD A4U88_RS10910 3b56f6985f4ba429e98cf524fc5ed2a9 87 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 87 4.0E-18 T 25-04-2017 IPR020317 Uncharacterised protein family YjbD A4U88_RS22210 e4720e67990500930859eea1193efcc9 124 Pfam PF09350 Domain of unknown function (DUF1992) 7 72 1.5E-23 T 25-04-2017 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain A4U88_RS13530 920835efaaa531cad2844c86a17409d5 122 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 122 31.699 T 25-04-2017 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 A4U88_RS13530 920835efaaa531cad2844c86a17409d5 122 SUPERFAMILY SSF103481 6 107 1.29E-17 T 25-04-2017 A4U88_RS13530 920835efaaa531cad2844c86a17409d5 122 Pfam PF00893 Small Multidrug Resistance protein 3 93 1.1E-23 T 25-04-2017 IPR000390 Small multidrug resistance protein family GO:0016021 A4U88_RS08090 263da6479f2538102323d688b6f00368 93 SUPERFAMILY SSF143011 1 41 3.14E-5 T 25-04-2017 A4U88_RS00850 fd8b257eff646f000b5536372e14c14a 691 Gene3D G3DSA:1.25.40.10 503 557 3.7E-4 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS00850 fd8b257eff646f000b5536372e14c14a 691 Gene3D G3DSA:1.25.40.10 334 399 3.7E-4 T 25-04-2017 IPR011990 Tetratricopeptide-like helical domain GO:0005515 A4U88_RS16145 f92ca6e467ddf74292f171f19cd536d6 354 Pfam PF10592 AIPR protein 41 293 1.0E-36 T 25-04-2017 IPR018891 Abortive bacteriophage infection, resistance A4U88_RS22360 0b75d8b8281805a9782d752444921da0 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 4.1E-15 T 25-04-2017 IPR007419 BFD-like [2Fe-2S]-binding domain A4U88_RS12860 f716185dfe3c55dc801f810d6b1cb67f 86 Pfam PF07338 Protein of unknown function (DUF1471) 36 86 1.7E-16 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12860 f716185dfe3c55dc801f810d6b1cb67f 86 SUPERFAMILY SSF159871 3 86 3.79E-24 T 25-04-2017 IPR010854 Domain of unknown function DUF1471 A4U88_RS12860 f716185dfe3c55dc801f810d6b1cb67f 86 Gene3D G3DSA:3.30.1660.10 18 86 2.3E-25 T 25-04-2017 IPR025543 Dodecin-like A4U88_RS15050 5ed5734fb6ae3c12452300c4bc52bc24 344 TIGRFAM TIGR01540 portal_PBSX: phage portal protein, PBSX family 53 333 5.4E-80 T 25-04-2017 IPR006430 Phage portal protein PBSX family A4U88_RS15050 5ed5734fb6ae3c12452300c4bc52bc24 344 Pfam PF04860 Phage portal protein 103 344 5.1E-9 T 25-04-2017 IPR006944 Bacteriophage/Gene transfer agent portal protein A4U88_RS15050 5ed5734fb6ae3c12452300c4bc52bc24 344 PIRSF PIRSF018494 1 344 3.4E-158 T 25-04-2017 IPR030935 Phage portal protein PBSX family, Proteobacteria A4U88_RS22545 5666bafc2c14c40ed8a9f960a8d62c5b 92 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 2 83 6.4E-8 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS22545 5666bafc2c14c40ed8a9f960a8d62c5b 92 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 89 2.6E-13 T 25-04-2017 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family A4U88_RS05290 204549d294a0e7d67fe4dd166fcba121 268 Pfam PF01963 TraB family 31 268 2.7E-44 T 25-04-2017 IPR002816 Pheromone shutdown, TraB A4U88_RS03555 dbab9ae149184ba2939585737d498d42 464 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 25-04-2017 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 A4U88_RS03555 dbab9ae149184ba2939585737d498d42 464 PIRSF PIRSF006060 1 459 1.1E-69 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS03555 dbab9ae149184ba2939585737d498d42 464 Pfam PF00324 Amino acid permease 16 451 4.8E-104 T 25-04-2017 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 A4U88_RS15100 d1bfd7a43628df07f0ff75c7880cac4d 155 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 1.4E-44 T 25-04-2017 IPR009678 Bacteriophage tail completion protein R A4U88_RS00870 41b0fd2e390be5e389e04a9ca621be83 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 1.9E-65 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS13335 899f39ddb08ecb7ea1171f294830f966 90 Pfam PF07023 Protein of unknown function (DUF1315) 5 79 5.0E-27 T 25-04-2017 IPR009749 Protein of unknown function DUF1315 A4U88_RS15515 ab09810fdb220fedc086428c4ef88230 121 Pfam PF13665 Domain of unknown function (DUF4150) 18 106 7.7E-12 T 25-04-2017 IPR025425 Domain of unknown function DUF4150 A4U88_RS06225 8679461338310a28b9588ee4ed0addf4 656 Pfam PF01757 Acyltransferase family 9 323 2.0E-32 T 25-04-2017 IPR002656 Acyltransferase 3 GO:0016747 A4U88_RS20900 b9555603cc8841b9daa62d09d5ae1489 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 2.7E-42 T 25-04-2017 IPR009659 Protein of unknown function DUF1249 A4U88_RS06995 a5644c39f3bca1a549239cd6802dc431 386 SUPERFAMILY SSF161098 177 373 5.49E-32 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06995 a5644c39f3bca1a549239cd6802dc431 386 Gene3D G3DSA:1.10.3720.10 161 377 2.3E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06995 a5644c39f3bca1a549239cd6802dc431 386 Gene3D G3DSA:1.10.3720.10 50 67 2.3E-29 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06995 a5644c39f3bca1a549239cd6802dc431 386 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 197 382 2.8E-18 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS06850 9b4eed3abadccc79dded7a18df2fefad 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 340 7.4E-41 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS06850 9b4eed3abadccc79dded7a18df2fefad 358 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 2.2E-130 T 25-04-2017 IPR017778 ABC transporter, urea, permease protein, UrtC A4U88_RS15120 366bc7b115794381272dd90edcdac119 302 Pfam PF04865 Baseplate J-like protein 118 261 3.4E-27 T 25-04-2017 IPR006949 Baseplate protein J-like A4U88_RS15120 366bc7b115794381272dd90edcdac119 302 PIRSF PIRSF020481 1 302 6.1E-123 T 25-04-2017 IPR014507 Baseplate assembly protein J, predicted A4U88_RS07345 3a2fbc1f7e2b3c0ba10fd0e760b43cf3 156 Pfam PF04224 Protein of unknown function, DUF417 9 150 2.9E-34 T 25-04-2017 IPR007339 Protein of unknown function DUF417 A4U88_RS07345 3a2fbc1f7e2b3c0ba10fd0e760b43cf3 156 PIRSF PIRSF028065 9 154 2.6E-24 T 25-04-2017 IPR016865 Uncharacterised conserved protein UCP028065, membrane A4U88_RS01400 06ef4142a895e23b4989171f74d07d8d 205 Pfam PF09997 Predicted membrane protein (DUF2238) 42 182 7.7E-54 T 25-04-2017 IPR014509 Uncharacterised conserved protein UCP020606 A4U88_RS01400 06ef4142a895e23b4989171f74d07d8d 205 PIRSF PIRSF020606 1 204 1.2E-75 T 25-04-2017 IPR014509 Uncharacterised conserved protein UCP020606 A4U88_RS02315 60faa3f6e8071e3e908f222558c65121 317 Pfam PF06189 5'-nucleotidase 46 307 3.3E-102 T 25-04-2017 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|Reactome: R-HSA-74259 A4U88_RS13975 cff934c877512dfc7d14690bb83872b7 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 316 2.6E-39 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13975 cff934c877512dfc7d14690bb83872b7 318 SUPERFAMILY SSF161098 89 299 2.4E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS13975 cff934c877512dfc7d14690bb83872b7 318 Gene3D G3DSA:1.10.3720.10 87 312 1.5E-14 T 25-04-2017 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 A4U88_RS19620 58c2c219955e9c9a9bb27494b265d5b1 175 Gene3D G3DSA:2.60.40.1090 30 175 7.2E-28 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS19620 58c2c219955e9c9a9bb27494b265d5b1 175 SUPERFAMILY SSF49401 30 175 3.38E-25 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS19620 58c2c219955e9c9a9bb27494b265d5b1 175 Pfam PF00419 Fimbrial protein 33 175 3.2E-11 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS06010 e8516c5f7eb94028abb20d0fa0c5a194 98 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 6 96 1.4E-37 T 25-04-2017 IPR011846 Cyd operon protein YbgE A4U88_RS06010 e8516c5f7eb94028abb20d0fa0c5a194 98 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 18 95 6.7E-33 T 25-04-2017 IPR011846 Cyd operon protein YbgE A4U88_RS04490 e6b81d3047f1a2dc8c15a487793ef079 162 Pfam PF10696 Protein of unknown function (DUF2501) 82 160 3.6E-30 T 25-04-2017 IPR019637 Protein of unknown function DUF2501 A4U88_RS04170 b357e98af4ea18e190c8bac44b9c14ef 297 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 32 288 4.9E-18 T 25-04-2017 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 A4U88_RS04170 b357e98af4ea18e190c8bac44b9c14ef 297 SUPERFAMILY SSF51695 26 294 7.59E-50 T 25-04-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 A4U88_RS04170 b357e98af4ea18e190c8bac44b9c14ef 297 Gene3D G3DSA:3.20.20.190 10 295 2.6E-53 T 25-04-2017 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 A4U88_RS16925 db5a5416a923fd8add4e9c7d08ef7086 283 Gene3D G3DSA:3.40.50.970 5 275 1.4E-88 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS16925 db5a5416a923fd8add4e9c7d08ef7086 283 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 16 263 7.9E-48 T 25-04-2017 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 A4U88_RS16925 db5a5416a923fd8add4e9c7d08ef7086 283 SUPERFAMILY SSF52518 4 267 4.84E-81 T 25-04-2017 IPR029061 Thiamin diphosphate-binding fold A4U88_RS12525 e141557dd25f0b5b6a5a08dc80133289 463 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 461 1.9E-171 T 25-04-2017 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 A4U88_RS12525 e141557dd25f0b5b6a5a08dc80133289 463 Pfam PF13520 Amino acid permease 5 408 9.8E-73 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS12525 e141557dd25f0b5b6a5a08dc80133289 463 PIRSF PIRSF006060 1 460 5.7E-51 T 25-04-2017 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 A4U88_RS20690 b87c99ece6e0ecfea540779ccffe3d94 433 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 12 396 2.9E-21 T 25-04-2017 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 A4U88_RS23745 99183a1d5b2bf1752f2a38f49284c9c6 318 Gene3D G3DSA:3.20.20.370 60 313 9.9E-11 T 25-04-2017 IPR002509 NodB homology domain GO:0005975|GO:0016810 A4U88_RS23745 99183a1d5b2bf1752f2a38f49284c9c6 318 SUPERFAMILY SSF88713 29 232 3.06E-10 T 25-04-2017 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 A4U88_RS02860 7af196093df0364ac4107890730b5282 61 SUPERFAMILY SSF69047 1 58 1.31E-15 T 25-04-2017 IPR008462 CsbD-like A4U88_RS02860 7af196093df0364ac4107890730b5282 61 Gene3D G3DSA:1.10.1470.10 1 57 5.8E-17 T 25-04-2017 IPR008462 CsbD-like A4U88_RS01810 2a079e2e8ffb7b4d0acbc816e4ee147a 1272 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 936 1272 1.3E-68 T 25-04-2017 IPR007452 Translocation and assembly module TamB A4U88_RS06005 36e3b6fcb60785fe187d30d727ae7996 37 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.7E-15 T 25-04-2017 IPR012994 Membrane bound YbgT-like A4U88_RS06005 36e3b6fcb60785fe187d30d727ae7996 37 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 4.1E-20 T 25-04-2017 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 A4U88_RS23605 6d3da2ce05a7938c4ca2b9e9039c0e46 194 Pfam PF07305 Protein of unknown function (DUF1454) 7 193 1.5E-81 T 25-04-2017 IPR009918 Protein of unknown function DUF1454 A4U88_RS21430 8663822880adbfea6a0eab966453d292 103 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 20 93 1.2E-21 T 25-04-2017 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 A4U88_RS12380 51356bd0ae3822fefc2b22fa900c7f01 536 Pfam PF01384 Phosphate transporter family 81 526 7.2E-82 T 25-04-2017 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 A4U88_RS06515 e8f8dea3e52f45465278dc862289c766 149 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 8 142 1.0E-24 T 25-04-2017 IPR003477 mRNA interferase PemK-like protein GO:0003677 A4U88_RS00815 84ed6c5d869ef5fb43293d1eef4b83cb 118 Pfam PF10694 Protein of unknown function (DUF2500) 5 115 1.7E-30 T 25-04-2017 IPR019635 Protein of unknown function DUF2500 A4U88_RS11650 3a98d8cceedf90f116e8ef82cb01c14e 133 Gene3D G3DSA:3.10.180.10 1 128 9.5E-23 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11650 3a98d8cceedf90f116e8ef82cb01c14e 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 125 1.2E-7 T 25-04-2017 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain A4U88_RS11650 3a98d8cceedf90f116e8ef82cb01c14e 133 SUPERFAMILY SSF54593 2 131 5.07E-22 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11725 a02934f557ffb65de272ac02cea2a933 397 Gene3D G3DSA:1.20.1250.20 228 391 4.0E-20 T 25-04-2017 A4U88_RS11725 a02934f557ffb65de272ac02cea2a933 397 Gene3D G3DSA:1.20.1250.20 14 196 4.2E-25 T 25-04-2017 A4U88_RS11725 a02934f557ffb65de272ac02cea2a933 397 SUPERFAMILY SSF103473 12 389 1.1E-55 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS11725 a02934f557ffb65de272ac02cea2a933 397 Pfam PF07690 Major Facilitator Superfamily 23 356 1.0E-37 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS14490 71e56263aff2aa6aaa1aa4fd65a15f32 134 Pfam PF06366 Flagellar protein FlhE 29 134 1.1E-36 T 25-04-2017 IPR009420 Flagellar protein FlhE A4U88_RS14705 b027cbcc936875fe5d21806bd85f4388 119 Pfam PF16695 Type VI secretion system (T6SS), amidase immunity protein 32 109 1.0E-12 T 25-04-2017 IPR032032 Type VI secretion system (T6SS), amidase immunity protein A4U88_RS08045 abbdd075b2d933d8e500042497f8242c 104 Pfam PF07214 Protein of unknown function (DUF1418) 1 92 2.7E-38 T 25-04-2017 IPR010815 Protein of unknown function DUF1418 A4U88_RS16175 68558baeb7b62db0f0d4cc509ea4d9a2 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 320 4.4E-52 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS13125 d84ce9862b58325465ee66bfabdf9348 345 Pfam PF02653 Branched-chain amino acid transport system / permease component 62 334 1.0E-52 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS21050 b539fd03c83aed63d19e68869601826c 116 SUPERFAMILY SSF54909 15 104 3.22E-5 T 25-04-2017 IPR011008 Dimeric alpha-beta barrel A4U88_RS11565 ef45e98361df8584fd684728eaf43d1a 70 Pfam PF05433 Glycine zipper 2TM domain 32 67 2.3E-8 T 25-04-2017 IPR008816 Glycine zipper 2TM domain GO:0019867 A4U88_RS13850 bc51db6a90cf29fddf61d264b6f14e93 78 Pfam PF13269 Protein of unknown function (DUF4060) 3 75 1.4E-38 T 25-04-2017 IPR025135 Protein of unknown function DUF4060 A4U88_RS13435 9ab724b91f7ac3e6dd76c410a387f8ba 511 Pfam PF04293 SpoVR like protein 20 451 1.3E-177 T 25-04-2017 IPR007390 Sporulation stage V, protein R A4U88_RS18970 5b87c91543549ab5585374e9b405dc8c 451 PIRSF PIRSF005348 13 450 2.7E-157 T 25-04-2017 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 A4U88_RS18970 5b87c91543549ab5585374e9b405dc8c 451 Pfam PF03390 2-hydroxycarboxylate transporter family 34 442 1.9E-141 T 25-04-2017 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 A4U88_RS17715 11950c10b0b9467e0fba4d1eea4cc6b3 279 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 47 243 4.6E-37 T 25-04-2017 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN A4U88_RS17715 11950c10b0b9467e0fba4d1eea4cc6b3 279 PIRSF PIRSF020419 1 279 7.7E-90 T 25-04-2017 IPR016773 Ferric uptake regulator, CjrA, predicted A4U88_RS17715 11950c10b0b9467e0fba4d1eea4cc6b3 279 SUPERFAMILY SSF159501 30 276 4.39E-64 T 25-04-2017 A4U88_RS12185 818d69294e694c2e72b1f5be8eef95a8 229 Pfam PF01988 VIT family 14 221 1.0E-50 T 25-04-2017 IPR008217 Ccc1 family A4U88_RS01440 ae5e976d4fe896a0cc87d3cc1d5deb58 220 Gene3D G3DSA:2.60.40.1090 62 219 1.4E-28 T 25-04-2017 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 A4U88_RS01440 ae5e976d4fe896a0cc87d3cc1d5deb58 220 SUPERFAMILY SSF49401 63 220 2.98E-29 T 25-04-2017 IPR008966 Adhesion domain A4U88_RS08035 b1bde4c107fd6e21a00d8f72ebbb3686 129 Pfam PF11045 Putative inner membrane protein of Enterobacteriaceae 4 117 3.6E-46 T 25-04-2017 IPR020368 Uncharacterised protein family YbjM GO:0016021 A4U88_RS08035 b1bde4c107fd6e21a00d8f72ebbb3686 129 ProDom PD079046 MEMBRANE INNER YBJM TRANSMEMBRANE 31 104 5.0E-12 T 25-04-2017 IPR020368 Uncharacterised protein family YbjM GO:0016021 A4U88_RS18855 02a6bc1dce5122c5223a802c773feac3 137 Pfam PF07681 DoxX 10 90 1.8E-16 T 25-04-2017 IPR032808 DoxX family A4U88_RS02390 ac5f634eeb5456013826227a782dc8b9 465 Pfam PF01943 Polysaccharide biosynthesis protein 4 275 3.0E-19 T 25-04-2017 IPR002797 Polysaccharide biosynthesis protein GO:0016020 A4U88_RS06540 af3012060501b1160dd252b7b8b50e5a 196 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 5.1E-53 T 25-04-2017 IPR009698 Protein of unknown function DUF1282 A4U88_RS09885 4b5a45a1d914e2b9fb545176e50d74cd 234 Pfam PF13302 Acetyltransferase (GNAT) domain 36 174 2.8E-13 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS09885 4b5a45a1d914e2b9fb545176e50d74cd 234 Gene3D G3DSA:3.40.630.30 14 214 5.7E-51 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS09885 4b5a45a1d914e2b9fb545176e50d74cd 234 SUPERFAMILY SSF55729 30 198 2.55E-33 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS04305 8ac9bb84f3b4e42ba75d817f2d54859c 545 Pfam PF04932 O-Antigen ligase 184 326 3.2E-14 T 25-04-2017 IPR007016 O-antigen ligase-related A4U88_RS04305 8ac9bb84f3b4e42ba75d817f2d54859c 545 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 364 538 6.3E-18 T 25-04-2017 IPR021797 Virulence factor membrane-bound polymerase, C-terminal A4U88_RS09840 204d22b3c8c4e7726c457fe3ca98de90 437 Pfam PF04632 Fusaric acid resistance protein family 13 185 2.6E-27 T 25-04-2017 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 A4U88_RS09840 204d22b3c8c4e7726c457fe3ca98de90 437 Pfam PF04632 Fusaric acid resistance protein family 280 435 1.2E-18 T 25-04-2017 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 A4U88_RS18070 06c968bfc2b682363b1b57846fe182e0 188 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 2.3E-36 T 25-04-2017 IPR000182 GNAT domain GO:0008080 A4U88_RS18070 06c968bfc2b682363b1b57846fe182e0 188 SUPERFAMILY SSF55729 3 157 1.49E-40 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS18070 06c968bfc2b682363b1b57846fe182e0 188 Gene3D G3DSA:3.40.630.30 3 184 4.6E-54 T 25-04-2017 IPR016181 Acyl-CoA N-acyltransferase A4U88_RS19015 c98cd34b1ba9fecd30af97b43977481e 115 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 105 2.1E-14 T 25-04-2017 IPR008407 Branched-chain amino acid transport, AzlD A4U88_RS21745 1af1372001351d4071096e1323c1188a 140 Pfam PF03788 LrgA family 30 122 1.5E-25 T 25-04-2017 IPR005538 LrgA/CidA family GO:0016021 A4U88_RS09445 1615573456bc148c5b73570ac2452fce 113 Pfam PF10709 Protein of unknown function (DUF2511) 25 111 2.0E-44 T 25-04-2017 IPR019648 Protein of unknown function DUF2511 A4U88_RS12715 c4f8e4cc4210920e6558bd9b2c88878d 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 5.4E-95 T 25-04-2017 IPR014319 Phage shock protein, PspA A4U88_RS12715 c4f8e4cc4210920e6558bd9b2c88878d 221 Pfam PF04012 PspA/IM30 family 2 216 2.0E-48 T 25-04-2017 IPR007157 PspA/IM30 A4U88_RS18655 2aafadae5729d22fe821baa2bc48a948 158 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 1.4E-35 T 25-04-2017 IPR007359 Positive regulator of sigma(E), RseC/MucC A4U88_RS18655 2aafadae5729d22fe821baa2bc48a948 158 PIRSF PIRSF004923 1 151 6.0E-38 T 25-04-2017 IPR026268 Protein RseC A4U88_RS20580 607d92a6cfc86a7bbdf46fe3f96b7b12 184 Pfam PF02325 YGGT family 10 76 4.3E-21 T 25-04-2017 IPR003425 CCB3/YggT GO:0016020 A4U88_RS20580 607d92a6cfc86a7bbdf46fe3f96b7b12 184 Pfam PF02325 YGGT family 108 171 8.8E-19 T 25-04-2017 IPR003425 CCB3/YggT GO:0016020 A4U88_RS15075 0b343eef8ac118ee3ace972470b95667 173 Pfam PF05926 Phage head completion protein (GPL) 35 173 4.6E-53 T 25-04-2017 IPR009225 Bacteriophage head completion protein GpL GO:0019069 A4U88_RS14365 7f57c27710b67a12b72eea45b8f33df1 409 PRINTS PR01007 Flagellar hook-length control protein signature 42 58 3.9E-14 T 25-04-2017 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 A4U88_RS14365 7f57c27710b67a12b72eea45b8f33df1 409 PRINTS PR01007 Flagellar hook-length control protein signature 392 408 3.9E-14 T 25-04-2017 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 A4U88_RS14365 7f57c27710b67a12b72eea45b8f33df1 409 PRINTS PR01007 Flagellar hook-length control protein signature 325 348 3.9E-14 T 25-04-2017 IPR001635 Flagellar hook-length control protein FliK GO:0009424|GO:0044780 A4U88_RS14365 7f57c27710b67a12b72eea45b8f33df1 409 Pfam PF02120 Flagellar hook-length control protein FliK 277 358 2.0E-20 T 25-04-2017 IPR021136 Flagellar hook-length control protein-like, C-terminal A4U88_RS17075 8c3c3142e853c62be1f42687736e2aca 143 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 7 137 9.1E-20 T 25-04-2017 IPR009936 Protein of unknown function DUF1468 A4U88_RS03465 a4b15a4da99e7996f659fabbbdcbc142 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 283 5.3E-158 T 25-04-2017 IPR031347 Protein AmpE A4U88_RS11500 f8ca4a9e3317948d970e54c0d5f6589c 144 SUPERFAMILY SSF54593 20 137 9.68E-13 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS11500 f8ca4a9e3317948d970e54c0d5f6589c 144 Gene3D G3DSA:3.10.180.10 21 138 1.3E-13 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase A4U88_RS12965 bdc41be23d43da270f43d1035a4c48a8 83 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 4.0E-44 T 25-04-2017 IPR019633 Protein of unknown function DUF2498 A4U88_RS18260 e71a6c8b6dbb9b525ed13a9ed7bca112 86 Pfam PF06643 Protein of unknown function (DUF1158) 11 80 7.7E-7 T 25-04-2017 IPR010590 Protein of unknown function DUF1158 A4U88_RS19565 7854793a075b2f7043b6fb7ff2562a5a 297 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 41 297 1.4E-95 T 25-04-2017 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 A4U88_RS00350 6ba683fbe5b5bddc70621b8e78a79d8a 388 Pfam PF07690 Major Facilitator Superfamily 11 324 3.1E-32 T 25-04-2017 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 A4U88_RS00350 6ba683fbe5b5bddc70621b8e78a79d8a 388 Gene3D G3DSA:1.20.1250.20 200 381 1.6E-11 T 25-04-2017 A4U88_RS00350 6ba683fbe5b5bddc70621b8e78a79d8a 388 SUPERFAMILY SSF103473 6 380 1.44E-53 T 25-04-2017 IPR020846 Major facilitator superfamily domain A4U88_RS00350 6ba683fbe5b5bddc70621b8e78a79d8a 388 Gene3D G3DSA:1.20.1250.20 6 188 1.2E-24 T 25-04-2017 A4U88_RS03850 b2d14da0c1683636445abe82234e67b8 75 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 6.4E-20 T 25-04-2017 IPR007684 Zinc finger, Ogr/Delta-type A4U88_RS20520 2dcdabe6f34f1adf8e5b417130d2e226 350 Pfam PF13478 XdhC Rossmann domain 168 313 5.9E-34 T 25-04-2017 IPR027051 XdhC Rossmann domain A4U88_RS20520 2dcdabe6f34f1adf8e5b417130d2e226 350 Pfam PF02625 XdhC and CoxI family 17 81 6.2E-17 T 25-04-2017 IPR003777 XdhC- CoxI A4U88_RS23115 d85aef41ce5a3f5c6eec466dfb24309e 500 Pfam PF01384 Phosphate transporter family 30 489 7.1E-88 T 25-04-2017 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 A4U88_RS04470 33fecccbfac4e33c84a522dc4e38ebf1 367 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 38 364 3.0E-149 T 25-04-2017 IPR011673 Protein of unknown function DUF1615 A4U88_RS04470 33fecccbfac4e33c84a522dc4e38ebf1 367 Pfam PF07759 Protein of unknown function (DUF1615) 55 364 3.4E-147 T 25-04-2017 IPR011673 Protein of unknown function DUF1615 A4U88_RS13870 a311fa7fe833e182f8cb5d7928979ce1 47 Pfam PF13998 MgrB protein 19 47 5.4E-18 T 25-04-2017 IPR020907 PhoP/PhoQ regulator MgrB A4U88_RS17175 56a99752fecf9fc0ac82ffce19453fe8 185 Pfam PF04315 Elongation factor P hydroxylase 16 178 3.6E-81 T 25-04-2017 IPR007411 Elongation factor P hydroxylase A4U88_RS14025 b642f989f888c9e903aec84fc72cdafb 377 Pfam PF04116 Fatty acid hydroxylase superfamily 78 211 7.3E-27 T 25-04-2017 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 A4U88_RS06420 86d420ff7702af5f39afaec735ad8d56 244 Pfam PF01925 Sulfite exporter TauE/SafE 8 236 4.0E-9 T 25-04-2017 IPR002781 Transmembrane protein TauE-like GO:0016021 A4U88_RS17570 03c64b01ee35d43de8f26cf1b29f2bc0 155 Pfam PF14282 FlxA-like protein 63 146 1.9E-17 T 25-04-2017 IPR025577 FlxA-like protein A4U88_RS17410 42d00154a5fb9ea9d3b14176f4cea034 110 Pfam PF10697 Protein of unknown function (DUF2502) 24 70 6.5E-14 T 25-04-2017 IPR019638 Protein of unknown function DUF2502 A4U88_RS06025 aa7cf6832da46f74d317378391482fe9 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 2.1E-24 T 25-04-2017 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 A4U88_RS06135 250080bf535db14324858a44c32fb25d 115 Pfam PF07769 psiF repeat 36 68 2.1E-15 T 25-04-2017 IPR011690 Phosphate-starvation-induced PsiF repeat A4U88_RS06135 250080bf535db14324858a44c32fb25d 115 Pfam PF07769 psiF repeat 80 112 2.1E-19 T 25-04-2017 IPR011690 Phosphate-starvation-induced PsiF repeat A4U88_RS16595 079e5d09402a70b3b9842fd8f8528d32 120 Pfam PF06530 Phage antitermination protein Q 2 119 3.0E-40 T 25-04-2017 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 A4U88_RS00775 a17a062f8932ac983b5ec3a857080179 187 Pfam PF08786 Domain of unknown function (DUF1795) 52 182 1.4E-25 T 25-04-2017 IPR014894 Protein DcrB A4U88_RS15145 ef5cffd9bab10e396a50f0c0f41ebbbc 390 Pfam PF04984 Phage tail sheath protein 92 377 1.0E-54 T 25-04-2017 IPR007067 Tail sheath protein A4U88_RS15145 ef5cffd9bab10e396a50f0c0f41ebbbc 390 Pfam PF04984 Phage tail sheath protein 1 96 5.9E-17 T 25-04-2017 IPR007067 Tail sheath protein A4U88_RS14020 152b828ee596e976c03fd6c9a2411576 360 Pfam PF00487 Fatty acid desaturase 66 340 4.9E-33 T 25-04-2017 IPR005804 Fatty acid desaturase domain GO:0006629 A4U88_RS14695 ff3741fe34ea3cfd6db2b7e2d80e178f 264 Pfam PF07007 Protein of unknown function (DUF1311) 181 260 2.2E-5 T 25-04-2017 IPR009739 Protein of unknown function DUF1311 A4U88_RS20670 b79961da100233aed857b73790c21543 294 Pfam PF14305 TupA-like ATPgrasp 44 288 2.2E-42 T 25-04-2017 IPR029465 TupA-like ATPgrasp protein A4U88_RS19950 7f582960fef9aa0dcd394d6050a14b64 105 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 41 97 1.1E-14 T 25-04-2017 IPR025528 BrnA antitoxin of type II toxin-antitoxin system A4U88_RS15220 05728f637d29bb75e23bd0c891e7e6d4 82 Pfam PF04226 Transglycosylase associated protein 33 82 1.5E-15 T 25-04-2017 IPR007341 Transglycosylase-associated protein GO:0016021 A4U88_RS23365 8b997bc9be4356b4909de686c994f279 32 Pfam PF08046 IlvGEDA operon leader peptide 1 32 1.2E-20 T 25-04-2017 IPR012567 IlvGEDA operon leader peptide GO:0009082 A4U88_RS24040 9c3e69eb1c8ad32de990a2ab78bbfab4 322 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 1.3E-52 T 25-04-2017 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 A4U88_RS21205 7115403ed75e90be73035df2bd782616 131 Pfam PF07681 DoxX 8 88 1.6E-16 T 25-04-2017 IPR032808 DoxX family A4U88_RS07235 e3b9460adcf7b578048ab45e146097a9 295 Pfam PF00892 EamA-like transporter family 150 279 6.3E-18 T 25-04-2017 IPR000620 EamA domain GO:0016020|GO:0016021 A4U88_RS07235 e3b9460adcf7b578048ab45e146097a9 295 SUPERFAMILY SSF103481 187 280 8.63E-11 T 25-04-2017 A4U88_RS07235 e3b9460adcf7b578048ab45e146097a9 295 SUPERFAMILY SSF103481 48 138 2.22E-5 T 25-04-2017 A4U88_RS20600 8ccc3d83009735d50b680f8b73a41718 144 Pfam PF01724 Domain of unknown function DUF29 6 142 2.5E-44 T 25-04-2017 IPR002636 Protein from unkown function DUF29 A4U88_RS06335 833f3fd108cffcc4a6b7a78a7f782697 384 Pfam PF12698 ABC-2 family transporter protein 37 376 4.2E-42 T 25-04-2017 A4U88_RS12845 ccfd1f489f9c9639401f6aa6007ceea6 72 Pfam PF05433 Glycine zipper 2TM domain 34 71 6.3E-7 T 25-04-2017 IPR008816 Glycine zipper 2TM domain GO:0019867 A4U88_RS08365 108f640a55ee260b6e765eb2e6b8ac77 408 Pfam PF06224 Winged helix DNA-binding domain 38 382 1.2E-89 T 25-04-2017 IPR009351 Protein of unknown function DUF1006 A4U88_RS05155 a20d1d79a21b9d05da69767df4a73048 178 Pfam PF07445 Primosomal replication protein priC 9 175 2.9E-55 T 25-04-2017 IPR010890 Primosomal replication PriB/PriC A4U88_RS09950 b57414e37b3de353714e04e111942e23 300 Pfam PF13391 HNH endonuclease 198 249 2.3E-9 T 25-04-2017 IPR003615 HNH nuclease A4U88_RS20205 df75bec7e99a4a6e49072b39670b0e1e 291 Pfam PF10014 2OG-Fe dioxygenase 46 258 2.9E-52 T 25-04-2017 IPR018724 2OG-Fe dioxygenase A4U88_RS10040 218e11ff383c42b0a0058b9b9f80b35c 205 Pfam PF01810 LysE type translocator 16 203 1.5E-25 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS10845 3ed59351bcbb0d2c939ca40512aa2d00 676 Pfam PF04632 Fusaric acid resistance protein family 20 663 7.3E-197 T 25-04-2017 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 A4U88_RS06465 bbb7537d66574d8dc12fb6dd64ee7586 225 Gene3D G3DSA:3.40.50.880 7 215 2.1E-57 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS06465 bbb7537d66574d8dc12fb6dd64ee7586 225 Pfam PF01965 DJ-1/PfpI family 7 165 1.4E-26 T 25-04-2017 IPR002818 DJ-1/PfpI A4U88_RS06465 bbb7537d66574d8dc12fb6dd64ee7586 225 SUPERFAMILY SSF52317 7 188 6.7E-44 T 25-04-2017 IPR029062 Class I glutamine amidotransferase-like A4U88_RS11955 b3d3745f3beb3cb39cbb656d771b10f9 133 Pfam PF11162 Protein of unknown function (DUF2946) 1 129 6.3E-17 T 25-04-2017 IPR021333 Protein of unknown function DUF2946 A4U88_RS04535 81c003f8ceb6bcc699f3ad1930cbd231 150 Pfam PF04134 Protein of unknown function, DUF393 17 126 2.2E-28 T 25-04-2017 IPR007263 Protein of unknown function DUF393 A4U88_RS09180 9aae7693860d9aee9389c9b81eba74f0 173 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 7.4E-18 T 25-04-2017 IPR003772 Protein of unknown function DUF177 A4U88_RS08125 844c8ff07b6debd4e69ff265438d3638 180 Pfam PF12883 Protein of unknown function (DUF3828) 40 162 1.2E-16 T 25-04-2017 IPR024289 Domain of unknown function DUF3828 A4U88_RS06690 4b53dcc579c1b859731d0530757451e1 196 Pfam PF01810 LysE type translocator 14 193 1.1E-16 T 25-04-2017 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 A4U88_RS19355 73a7e1d9ea18289538df87b159e50973 126 Pfam PF04241 Protein of unknown function (DUF423) 15 101 1.8E-24 T 25-04-2017 IPR006696 Protein of unknown function DUF423 A4U88_RS21640 c5d00697400d8d89e5e39ca7f8dbbf93 198 Pfam PF01794 Ferric reductase like transmembrane component 48 161 4.0E-14 T 25-04-2017 IPR013130 Ferric reductase transmembrane component-like domain A4U88_RS00300 5828c694ae2dc7af685162778d63f957 112 Pfam PF03526 Colicin E1 (microcin) immunity protein 37 78 5.8E-6 T 25-04-2017 IPR003061 Colicin E1 (microcin) immunity protein GO:0015643|GO:0030153 A4U88_RS15590 3b1efed5b3f0f97ef2d118194ae9fa3b 210 Pfam PF14090 Helix-turn-helix domain 145 209 4.7E-6 T 25-04-2017 A4U88_RS11280 fc90f4f51cf5a4d07910bcdb5b1744fc 146 Pfam PF02794 RTX toxin acyltransferase family 20 138 1.3E-11 T 25-04-2017 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 A4U88_RS08620 e18938465ae2d419cc9e7a00dfa689d1 219 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 213 1.4E-40 T 25-04-2017 A4U88_RS02215 aa1a86c1a4e4ba294b747ef8a5f53d71 308 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 305 4.0E-87 T 25-04-2017 IPR007296 Domain of unknown function DUF403 A4U88_RS06900 67eb9e95f2a24c67e080f30a2199509b 189 Pfam PF16157 Domain of unknown function (DUF4865) 1 175 1.4E-60 T 25-04-2017 IPR032349 Protein of unknown function DUF4865 A4U88_RS02030 2a75e7bcb78d9da3bf9f8d129b90b869 292 Pfam PF01136 Peptidase family U32 92 237 9.0E-13 T 25-04-2017 IPR001539 Peptidase U32 GO:0006508|GO:0008233 A4U88_RS11090 ec8a525155dff6a09beb0acb40d2ccf5 510 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 479 4.3E-140 T 25-04-2017 IPR010352 Protein of unknown function DUF945 A4U88_RS11015 9de505cd3080f214aff938141a5914da 146 Pfam PF10754 Protein of unknown function (DUF2569) 6 144 2.3E-42 T 25-04-2017 IPR019690 Protein of unknown function DUF2569 A4U88_RS06770 0adb256c6315345db56c4532c17b68c1 367 Pfam PF05076 Suppressor of fused protein (SUFU) 200 363 6.3E-21 T 25-04-2017 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 A4U88_RS17240 a842314d02781df44841fc4328d31ba0 155 Pfam PF03918 Cytochrome C biogenesis protein 7 147 5.0E-57 T 25-04-2017 IPR005616 CcmH/CycL/Ccl2/NrfF family A4U88_RS16590 dfe50c5736b81fe795b5be5a13b7491f 92 Pfam PF16083 LydA holin phage, holin superfamily III 15 91 4.5E-15 T 25-04-2017 IPR032126 LydA-like holin A4U88_RS04675 b27936df2890481c40b4a1f55cb477ef 517 Pfam PF03169 OPT oligopeptide transporter protein 252 490 1.7E-12 T 25-04-2017 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 A4U88_RS04675 b27936df2890481c40b4a1f55cb477ef 517 Pfam PF03169 OPT oligopeptide transporter protein 17 195 2.5E-11 T 25-04-2017 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 A4U88_RS05150 ce9ca05118e6170787949d4d69e589a3 59 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 2.3E-23 T 25-04-2017 IPR019630 Protein of unknown function DUF2496, YbaM-related A4U88_RS04510 a87d41417786fba820f443f36b5d031d 126 Gene3D G3DSA:3.10.180.10 1 28 9.5E-6 T 25-04-2017 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase