locus-tag	class	description
JFT56_RS00030	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JFT56_RS00035	COG0751	glycine-tRNA ligase activity
JFT56_RS00045	COG2818	Glycosylase
JFT56_RS00050	COG0823	Involved in the tonB-independent uptake of proteins
JFT56_RS00050	COG1506	peptidase
JFT56_RS00050	COG4946	Tricorn protease homolog
JFT56_RS00065	COG3706	GGDEF domain
JFT56_RS00070	COG0183	Belongs to the thiolase family
JFT56_RS00085	COG1739	Uncharacterized protein family UPF0029
JFT56_RS00090	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JFT56_RS00095	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JFT56_RS00100	COG0640	Transcriptional regulator
JFT56_RS00110	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JFT56_RS00115	COG0569	domain protein
JFT56_RS00120	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JFT56_RS00120	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JFT56_RS00130	COG0242	peptide deformylase activity
JFT56_RS00140	COG0758	DNA mediated transformation
JFT56_RS00150	COG0551	DNA topoisomerase type I activity
JFT56_RS00180	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JFT56_RS00200	COG5001	Diguanylate cyclase
JFT56_RS00205	COG2267	carboxylic ester hydrolase activity
JFT56_RS00220	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JFT56_RS00230	COG3078	GTPase activator activity
JFT56_RS00255	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JFT56_RS00260	COG0705	Rhomboid family
JFT56_RS00265	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JFT56_RS00270	COG1063	alcohol dehydrogenase
JFT56_RS00285	COG1519	Transferase
JFT56_RS00290	COG3642	lipopolysaccharide core region biosynthetic process
JFT56_RS00295	COG0859	PFAM glycosyl transferase family 9
JFT56_RS00310	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JFT56_RS00315	COG3475	LICD family
JFT56_RS00320	COG0438	transferase activity, transferring glycosyl groups
JFT56_RS00320	COG0297	glycogen (starch) synthase activity
JFT56_RS00325	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JFT56_RS00345	COG0463	Glycosyl transferase, family 2
JFT56_RS00355	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JFT56_RS00370	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JFT56_RS00385	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JFT56_RS00400	COG2204	response regulator
JFT56_RS00405	COG3852	Histidine kinase
JFT56_RS00415	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JFT56_RS00445	COG1169	isochorismate synthase
JFT56_RS00450	COG4206	TonB-dependent receptor
JFT56_RS00455	COG1122	ATPase activity
JFT56_RS00515	COG2855	membrane
JFT56_RS00535	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JFT56_RS00540	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JFT56_RS00545	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JFT56_RS00550	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JFT56_RS00555	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JFT56_RS00565	COG3031	protein transport across the cell outer membrane
JFT56_RS00575	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JFT56_RS00580	COG1459	type II secretion system
JFT56_RS00585	COG2165	general secretion pathway protein
JFT56_RS00595	COG2165	general secretion pathway protein
JFT56_RS00600	COG4795	General secretion pathway protein
JFT56_RS00605	COG3156	type II secretion system protein K
JFT56_RS00625	COG1011	Hydrolase
JFT56_RS00635	COG5285	phytanoyl-CoA dioxygenase
JFT56_RS00675	COG0494	nUDIX hydrolase
JFT56_RS00680	COG1218	3'(2'),5'-bisphosphate nucleotidase
JFT56_RS00695	COG2814	Major facilitator Superfamily
JFT56_RS00790	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JFT56_RS00795	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
JFT56_RS00800	COG1715	Restriction endonuclease
JFT56_RS00810	COG2003	Belongs to the UPF0758 family
JFT56_RS00910	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JFT56_RS00910	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JFT56_RS00940	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JFT56_RS00965	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JFT56_RS00985	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JFT56_RS01000	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JFT56_RS01005	COG0051	transcription antitermination factor activity, RNA binding
JFT56_RS01010	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JFT56_RS01020	COG0089	rRNA binding
JFT56_RS01025	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JFT56_RS01030	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JFT56_RS01035	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JFT56_RS01045	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JFT56_RS01050	COG0255	Belongs to the universal ribosomal protein uL29 family
JFT56_RS01055	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JFT56_RS01080	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JFT56_RS01095	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JFT56_RS01110	COG0201	protein transport
JFT56_RS01115	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JFT56_RS01125	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JFT56_RS01130	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JFT56_RS01150	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JFT56_RS01155	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JFT56_RS01160	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JFT56_RS01165	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JFT56_RS01180	COG4235	cytochrome complex assembly
JFT56_RS01180	COG3088	subunit of a heme lyase
JFT56_RS01200	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JFT56_RS01235	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JFT56_RS01250	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JFT56_RS01255	COG0137	argininosuccinate synthase activity
JFT56_RS01265	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JFT56_RS01310	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JFT56_RS01325	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JFT56_RS01335	COG0180	Tryptophanyl-tRNA synthetase
JFT56_RS01340	COG0583	DNA-binding transcription factor activity
JFT56_RS01345	COG0697	spore germination
JFT56_RS01350	COG2823	Periplasmic or secreted lipoprotein
JFT56_RS01370	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JFT56_RS01420	COG1032	radical SAM domain protein
JFT56_RS01425	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JFT56_RS01430	COG0531	amino acid
JFT56_RS01435	COG1982	Orn Lys Arg decarboxylase major
JFT56_RS01445	COG1881	PFAM PEBP family protein
JFT56_RS01475	COG1404	Belongs to the peptidase S8 family
JFT56_RS01480	COG1404	Belongs to the peptidase S8 family
JFT56_RS01505	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JFT56_RS01535	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JFT56_RS01550	COG1757	Na H antiporter
JFT56_RS01555	COG0251	oxidation-reduction process
JFT56_RS01570	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JFT56_RS01580	COG2828	Protein conserved in bacteria
JFT56_RS01585	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JFT56_RS01590	COG0372	Belongs to the citrate synthase family
JFT56_RS01595	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JFT56_RS01605	COG0204	Acyl-transferase
JFT56_RS01610	COG0204	Acyl-transferase
JFT56_RS01615	COG0606	chelatase, subunit chli
JFT56_RS01625	COG3437	response regulator, receiver
JFT56_RS01630	COG5002	protein histidine kinase activity
JFT56_RS01630	COG2198	Histidine kinase
JFT56_RS01630	COG0784	Response regulator, receiver
JFT56_RS01645	COG2197	response regulator
JFT56_RS01650	COG4585	Histidine kinase
JFT56_RS01665	COG1022	Amp-dependent synthetase and ligase
JFT56_RS01675	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JFT56_RS01730	COG3550	peptidyl-serine autophosphorylation
JFT56_RS01735	COG1396	sequence-specific DNA binding
JFT56_RS01740	COG0583	DNA-binding transcription factor activity
JFT56_RS01745	COG1011	Hydrolase
JFT56_RS01750	COG0322	excinuclease ABC activity
JFT56_RS01760	COG1561	YicC-like family, N-terminal region
JFT56_RS01770	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JFT56_RS01790	COG0756	dUTP diphosphatase activity
JFT56_RS01795	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JFT56_RS01805	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JFT56_RS01810	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JFT56_RS01815	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JFT56_RS01815	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JFT56_RS01825	COG2962	Rard protein
JFT56_RS01835	COG0514	ATP-dependent DNA helicase (RecQ)
JFT56_RS01850	COG0473	3-isopropylmalate dehydrogenase activity
JFT56_RS01865	COG2067	long-chain fatty acid transport protein
JFT56_RS01890	COG3116	cell division
JFT56_RS01895	COG0768	penicillin binding
JFT56_RS01900	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JFT56_RS01905	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JFT56_RS01915	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JFT56_RS01920	COG0772	Belongs to the SEDS family
JFT56_RS01925	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JFT56_RS01935	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JFT56_RS01940	COG0849	cell division
JFT56_RS01945	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JFT56_RS01960	COG0741	lytic transglycosylase activity
JFT56_RS01960	COG1196	nuclear chromosome segregation
JFT56_RS01960	COG0739	heme binding
JFT56_RS02035	COG5001	Diguanylate cyclase
JFT56_RS02035	COG2203	Gaf domain
JFT56_RS02035	COG3706	GGDEF domain
JFT56_RS02035	COG4251	negative regulation of phosphorylation
JFT56_RS02040	COG0084	hydrolase, TatD family'
JFT56_RS02050	COG0805	protein transport
JFT56_RS02065	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JFT56_RS02080	COG0010	Belongs to the arginase family
JFT56_RS02085	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JFT56_RS02110	COG0840	transmembrane signaling receptor activity
JFT56_RS02120	COG1227	inorganic diphosphatase activity
JFT56_RS02140	COG0564	pseudouridine synthase activity
JFT56_RS02160	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
JFT56_RS02175	COG3046	protein related to deoxyribodipyrimidine photolyase
JFT56_RS02195	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JFT56_RS02220	COG0583	DNA-binding transcription factor activity
JFT56_RS02225	COG1902	pentaerythritol trinitrate reductase activity
JFT56_RS02255	COG0668	transmembrane transport
JFT56_RS02275	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
JFT56_RS02290	COG0330	HflC and HflK could
JFT56_RS02295	COG0330	HflC and HflK could
JFT56_RS02310	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JFT56_RS02325	COG0281	malic enzyme
JFT56_RS02355	COG1450	Type ii and iii secretion system protein
JFT56_RS02360	COG3267	Type II secretory pathway component ExeA
JFT56_RS02360	COG3409	Peptidoglycan-binding domain 1 protein
JFT56_RS02370	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JFT56_RS02375	COG1459	type II secretion system
JFT56_RS02385	COG2165	general secretion pathway protein
JFT56_RS02420	COG1077	Cell shape determining protein MreB Mrl
JFT56_RS02425	COG1792	Involved in formation and maintenance of cell shape
JFT56_RS02430	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JFT56_RS02440	COG1530	ribonuclease E activity
JFT56_RS02450	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JFT56_RS02455	COG0312	modulator of DNA gyrase
JFT56_RS02465	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS02485	COG3028	Belongs to the UPF0307 family
JFT56_RS02490	COG0312	modulator of DNA gyrase
JFT56_RS02520	COG3287	FIST C domain
JFT56_RS02520	COG2200	EAL domain
JFT56_RS02520	COG2199	diguanylate cyclase activity
JFT56_RS02525	COG2226	methyltransferase
JFT56_RS02550	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JFT56_RS02565	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS02570	COG3301	Polysulphide reductase, NrfD
JFT56_RS02580	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
JFT56_RS02585	COG0626	cystathionine gamma-synthase activity
JFT56_RS02590	COG0460	homoserine dehydrogenase
JFT56_RS02590	COG0527	aspartate kinase activity
JFT56_RS02600	COG0840	transmembrane signaling receptor activity
JFT56_RS02620	COG2863	cytochrome
JFT56_RS02625	COG3258	Cytochrome c
JFT56_RS02685	COG0546	phosphoglycolate phosphatase activity
JFT56_RS02690	COG0656	L-ascorbic acid biosynthetic process
JFT56_RS02695	COG0583	DNA-binding transcription factor activity
JFT56_RS02700	COG2814	Major facilitator Superfamily
JFT56_RS02720	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JFT56_RS02725	COG2814	Major facilitator Superfamily
JFT56_RS02730	COG0629	single-stranded DNA binding
JFT56_RS02760	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS02765	COG0511	ligase activity, forming carbon-carbon bonds
JFT56_RS02770	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JFT56_RS02775	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JFT56_RS02815	COG1970	mechanosensitive ion channel activity
JFT56_RS02820	COG2153	protein acetylation
JFT56_RS02840	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
JFT56_RS02860	COG4251	negative regulation of phosphorylation
JFT56_RS02865	COG0643	Histidine kinase
JFT56_RS02865	COG0784	Response regulator, receiver
JFT56_RS02865	COG2198	Histidine kinase
JFT56_RS02890	COG0745	RESPONSE REGULATOR receiver
JFT56_RS02920	COG2200	EAL domain
JFT56_RS02935	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JFT56_RS02945	COG4989	oxidoreductase activity
JFT56_RS02950	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JFT56_RS02955	COG0668	transmembrane transport
JFT56_RS02995	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
JFT56_RS03000	COG3706	GGDEF domain
JFT56_RS03005	COG2201	protein-glutamate methylesterase activity
JFT56_RS03010	COG1024	Enoyl-CoA hydratase
JFT56_RS03040	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JFT56_RS03085	COG0584	glycerophosphoryl diester phosphodiesterase
JFT56_RS03090	COG3264	Mechanosensitive ion channel
JFT56_RS03090	COG1511	domain protein
JFT56_RS03100	COG0688	phosphatidylethanolamine metabolic process
JFT56_RS03105	COG1162	GTPase activity
JFT56_RS03110	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JFT56_RS03135	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JFT56_RS03135	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JFT56_RS03140	COG0802	atpase or kinase
JFT56_RS03150	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JFT56_RS03160	COG1923	regulation of RNA biosynthetic process
JFT56_RS03165	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JFT56_RS03170	COG0330	HflC and HflK could
JFT56_RS03175	COG0330	HflC and HflK could
JFT56_RS03180	COG0723	plastoquinol--plastocyanin reductase activity
JFT56_RS03185	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JFT56_RS03190	COG2857	Cytochrome c1
JFT56_RS03195	COG0625	glutathione transferase activity
JFT56_RS03200	COG2969	positive regulation of protein catabolic process
JFT56_RS03225	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JFT56_RS03260	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JFT56_RS03275	COG5002	protein histidine kinase activity
JFT56_RS03275	COG5001	Diguanylate cyclase
JFT56_RS03280	COG1643	Atp-dependent helicase
JFT56_RS03285	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JFT56_RS03290	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JFT56_RS03295	COG3706	GGDEF domain
JFT56_RS03295	COG2203	Gaf domain
JFT56_RS03295	COG4251	negative regulation of phosphorylation
JFT56_RS03295	COG5001	Diguanylate cyclase
JFT56_RS03305	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
JFT56_RS03310	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JFT56_RS03320	COG0835	chemotaxis
JFT56_RS03325	COG0643	Histidine kinase
JFT56_RS03325	COG2198	Histidine kinase
JFT56_RS03350	COG1404	Belongs to the peptidase S8 family
JFT56_RS03380	COG0840	transmembrane signaling receptor activity
JFT56_RS03390	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JFT56_RS03395	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS03400	COG1136	(ABC) transporter
JFT56_RS03400	COG0577	efflux transmembrane transporter activity
JFT56_RS03405	COG1538	Outer membrane efflux protein
JFT56_RS03425	COG3547	Transposase (IS116 IS110 IS902 family)
JFT56_RS03440	COG1785	Belongs to the alkaline phosphatase family
JFT56_RS03445	COG0189	ligase activity
JFT56_RS03450	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JFT56_RS03460	COG3091	SprT-like family
JFT56_RS03475	COG0583	DNA-binding transcription factor activity
JFT56_RS03480	COG0439	Biotin carboxylase
JFT56_RS03505	COG3043	anaerobic respiration
JFT56_RS03510	COG0348	domain, Protein
JFT56_RS03515	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS03520	COG0243	molybdopterin cofactor binding
JFT56_RS03550	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JFT56_RS03550	COG4191	Histidine kinase
JFT56_RS03555	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JFT56_RS03565	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JFT56_RS03585	COG0577	efflux transmembrane transporter activity
JFT56_RS03590	COG1136	(ABC) transporter
JFT56_RS03595	COG1115	amino acid carrier protein
JFT56_RS03600	COG0784	Response regulator, receiver
JFT56_RS03600	COG2205	protein histidine kinase activity
JFT56_RS03600	COG5002	protein histidine kinase activity
JFT56_RS03605	COG3437	response regulator, receiver
JFT56_RS03615	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JFT56_RS03620	COG3647	Membrane
JFT56_RS03650	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JFT56_RS03665	COG0617	tRNA 3'-terminal CCA addition
JFT56_RS03670	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JFT56_RS03700	COG3954	Phosphoribulokinase
JFT56_RS03710	COG0429	hydrolase of the alpha beta-hydrolase fold
JFT56_RS03720	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
JFT56_RS03740	COG0488	(ABC) transporter
JFT56_RS03745	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JFT56_RS03760	COG1741	Belongs to the pirin family
JFT56_RS03765	COG0513	Belongs to the DEAD box helicase family
JFT56_RS03770	COG0346	lactoylglutathione lyase activity
JFT56_RS03775	COG0667	Aldo Keto reductase
JFT56_RS03780	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS03785	COG1805	sodium ion transport
JFT56_RS03790	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS03795	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS03800	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS03805	COG2871	sodium ion transport
JFT56_RS03840	COG2366	antibiotic biosynthetic process
JFT56_RS03845	COG0814	amino acid
JFT56_RS03860	COG1301	dicarboxylic acid transport
JFT56_RS03895	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JFT56_RS03900	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JFT56_RS03915	COG0191	fructose-bisphosphate aldolase activity
JFT56_RS03985	COG0513	Belongs to the DEAD box helicase family
JFT56_RS03990	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JFT56_RS04000	COG4974	Belongs to the 'phage' integrase family
JFT56_RS04005	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JFT56_RS04010	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JFT56_RS04030	COG3634	alkyl hydroperoxide reductase activity
JFT56_RS04040	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JFT56_RS04075	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JFT56_RS04080	COG1053	succinate dehydrogenase
JFT56_RS04110	COG1764	response to oxidative stress
JFT56_RS04115	COG1846	Transcriptional regulator
JFT56_RS04120	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JFT56_RS04135	COG0745	RESPONSE REGULATOR receiver
JFT56_RS04150	COG1404	Belongs to the peptidase S8 family
JFT56_RS04165	COG3383	formate dehydrogenase (NAD+) activity
JFT56_RS04175	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JFT56_RS04180	COG1686	Belongs to the peptidase S11 family
JFT56_RS04185	COG0387	Pfam Sodium calcium exchanger
JFT56_RS04220	COG0646	methionine synthase
JFT56_RS04220	COG1410	methionine synthase
JFT56_RS04230	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JFT56_RS04235	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JFT56_RS04255	COG1492	cobalamin metabolic process
JFT56_RS04260	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JFT56_RS04275	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JFT56_RS04285	COG2992	FlgJ-related protein
JFT56_RS04290	COG2199	diguanylate cyclase activity
JFT56_RS04325	COG1136	(ABC) transporter
JFT56_RS04330	COG0577	efflux transmembrane transporter activity
JFT56_RS04335	COG0577	efflux transmembrane transporter activity
JFT56_RS04335	COG1136	(ABC) transporter
JFT56_RS04345	COG3852	Histidine kinase
JFT56_RS04365	COG1309	transcriptional regulator
JFT56_RS04380	COG0589	response to stress
JFT56_RS04410	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
JFT56_RS04415	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JFT56_RS04425	COG0848	biopolymer transport protein
JFT56_RS04430	COG0811	peptide transport
JFT56_RS04435	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JFT56_RS04440	COG4771	TonB-dependent receptor
JFT56_RS04445	COG3721	Heme iron utilization protein
JFT56_RS04450	COG0748	coenzyme F420 binding
JFT56_RS04455	COG1132	(ABC) transporter
JFT56_RS04460	COG0318	PFAM AMP-dependent synthetase and ligase
JFT56_RS04465	COG0348	domain, Protein
JFT56_RS04470	COG3604	Transcriptional regulator
JFT56_RS04500	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JFT56_RS04505	COG0142	geranyltranstransferase activity
JFT56_RS04515	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JFT56_RS04525	COG2966	Psort location CytoplasmicMembrane, score
JFT56_RS04530	COG3610	response to peptide
JFT56_RS04565	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JFT56_RS04570	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JFT56_RS04575	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JFT56_RS04585	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JFT56_RS04590	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JFT56_RS04600	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JFT56_RS04630	COG0564	pseudouridine synthase activity
JFT56_RS04635	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JFT56_RS04645	COG1566	PFAM secretion protein HlyD family protein
JFT56_RS04655	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JFT56_RS04660	COG4208	sulfate ABC transporter
JFT56_RS04685	COG3313	Fe-S protein
JFT56_RS04695	COG0745	RESPONSE REGULATOR receiver
JFT56_RS04715	COG1584	GPR1 FUN34 yaaH family protein
JFT56_RS04745	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JFT56_RS04745	COG1017	nitric oxide dioxygenase activity
JFT56_RS04770	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JFT56_RS04775	COG0564	pseudouridine synthase activity
JFT56_RS04785	COG0542	response to heat
JFT56_RS04795	COG1183	phosphatidylcholine synthase activity
JFT56_RS04820	COG3630	sodium ion export across plasma membrane
JFT56_RS04830	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
JFT56_RS04840	COG1301	dicarboxylic acid transport
JFT56_RS04845	COG1238	metal cluster binding
JFT56_RS04855	COG2918	glutathione biosynthetic process
JFT56_RS04870	COG2199	diguanylate cyclase activity
JFT56_RS04875	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JFT56_RS04880	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JFT56_RS04885	COG0659	secondary active sulfate transmembrane transporter activity
JFT56_RS04890	COG2304	oxidoreductase activity
JFT56_RS04930	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
JFT56_RS04935	COG1115	amino acid carrier protein
JFT56_RS04950	COG0640	Transcriptional regulator
JFT56_RS04955	COG0268	Binds directly to 16S ribosomal RNA
JFT56_RS04960	COG0728	peptidoglycan biosynthetic process
JFT56_RS04965	COG0196	riboflavin kinase activity
JFT56_RS04970	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JFT56_RS04980	COG1047	Peptidyl-prolyl cis-trans
JFT56_RS04985	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JFT56_RS05035	COG1252	NADH dehydrogenase
JFT56_RS05040	COG1609	Transcriptional regulator
JFT56_RS05080	COG2971	BadF BadG BcrA BcrD
JFT56_RS05085	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JFT56_RS05090	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JFT56_RS05120	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JFT56_RS05125	COG1012	belongs to the aldehyde dehydrogenase family
JFT56_RS05140	COG3547	Transposase (IS116 IS110 IS902 family)
JFT56_RS05145	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JFT56_RS05150	COG2897	thiosulfate sulfurtransferase activity
JFT56_RS05160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JFT56_RS05165	COG1917	Cupin 2, conserved barrel domain protein
JFT56_RS05170	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JFT56_RS05185	COG3842	ATPase activity
JFT56_RS05190	COG1176	ABC-type spermidine putrescine transport system, permease component I
JFT56_RS05195	COG1177	transmembrane transport
JFT56_RS05200	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JFT56_RS05205	COG1012	belongs to the aldehyde dehydrogenase family
JFT56_RS05210	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JFT56_RS05215	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JFT56_RS05225	COG0840	transmembrane signaling receptor activity
JFT56_RS05235	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JFT56_RS05245	COG1610	YqeY-like protein
JFT56_RS05250	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JFT56_RS05255	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JFT56_RS05265	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JFT56_RS05270	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JFT56_RS05275	COG1968	undecaprenyl-diphosphatase activity
JFT56_RS05280	COG2226	methyltransferase
JFT56_RS05295	COG3267	Type II secretory pathway component ExeA
JFT56_RS05295	COG3409	Peptidoglycan-binding domain 1 protein
JFT56_RS05315	COG0540	Belongs to the ATCase OTCase family
JFT56_RS05345	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JFT56_RS05355	COG4942	peptidase
JFT56_RS05360	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JFT56_RS05385	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
JFT56_RS05390	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JFT56_RS05395	COG0493	'glutamate synthase
JFT56_RS05400	COG0067	glutamate synthase
JFT56_RS05400	COG0069	glutamate synthase activity
JFT56_RS05400	COG0070	glutamate synthase
JFT56_RS05405	COG1242	4 iron, 4 sulfur cluster binding
JFT56_RS05410	COG5002	protein histidine kinase activity
JFT56_RS05410	COG2198	Histidine kinase
JFT56_RS05410	COG0784	Response regulator, receiver
JFT56_RS05415	COG0583	DNA-binding transcription factor activity
JFT56_RS05440	COG0730	response to heat
JFT56_RS05445	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JFT56_RS05455	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JFT56_RS05465	COG0583	DNA-binding transcription factor activity
JFT56_RS05470	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JFT56_RS05480	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JFT56_RS05485	COG1595	DNA-templated transcription, initiation
JFT56_RS05495	COG3026	antisigma factor binding
JFT56_RS05505	COG0481	GTPase activity
JFT56_RS05530	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JFT56_RS05545	COG4536	flavin adenine dinucleotide binding
JFT56_RS05550	COG4137	Cytochrome C assembly protein
JFT56_RS05555	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JFT56_RS05570	COG0336	Belongs to the RNA methyltransferase TrmD family
JFT56_RS05575	COG0335	large ribosomal subunit rRNA binding
JFT56_RS05580	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JFT56_RS05585	COG1605	Chorismate mutase
JFT56_RS05585	COG0287	Prephenate dehydrogenase
JFT56_RS05595	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JFT56_RS05610	COG1605	Chorismate mutase
JFT56_RS05610	COG0077	Prephenate dehydratase
JFT56_RS05615	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JFT56_RS05620	COG0795	lipopolysaccharide-transporting ATPase activity
JFT56_RS05625	COG0795	lipopolysaccharide-transporting ATPase activity
JFT56_RS05650	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JFT56_RS05665	COG2268	Band 7 protein
JFT56_RS05680	COG2414	aldehyde ferredoxin oxidoreductase
JFT56_RS05690	COG0693	protein deglycase activity
JFT56_RS05710	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JFT56_RS05715	COG0784	Response regulator, receiver
JFT56_RS05715	COG2205	protein histidine kinase activity
JFT56_RS05715	COG5002	protein histidine kinase activity
JFT56_RS05725	COG0513	Belongs to the DEAD box helicase family
JFT56_RS05730	COG0840	transmembrane signaling receptor activity
JFT56_RS05735	COG3437	response regulator, receiver
JFT56_RS05740	COG0006	proline dipeptidase activity
JFT56_RS05745	COG1940	carbohydrate kinase activity
JFT56_RS05755	COG0545	Peptidyl-prolyl cis-trans isomerase
JFT56_RS05760	COG2031	fatty acid transporter
JFT56_RS05775	COG1309	transcriptional regulator
JFT56_RS05785	COG2311	Membrane
JFT56_RS05810	COG2964	Protein conserved in bacteria
JFT56_RS05820	COG1305	Transglutaminase-like
JFT56_RS05850	COG2867	negative regulation of translational initiation
JFT56_RS05855	COG2914	Belongs to the UPF0125 (RnfH) family
JFT56_RS05860	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JFT56_RS05890	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JFT56_RS05900	COG1607	acyl-coa hydrolase
JFT56_RS05915	COG1454	alcohol dehydrogenase
JFT56_RS05920	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JFT56_RS05925	COG1640	4-alpha-glucanotransferase
JFT56_RS05940	COG0058	SHG alpha-glucan phosphorylase activity
JFT56_RS05950	COG0297	glycogen (starch) synthase activity
JFT56_RS05960	COG0513	Belongs to the DEAD box helicase family
JFT56_RS05965	COG0523	cobalamin synthesis protein
JFT56_RS05985	COG0534	Mate efflux family protein
JFT56_RS06020	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JFT56_RS06030	COG1139	Iron-sulfur cluster binding protein
JFT56_RS06035	COG0247	lactate metabolic process
JFT56_RS06045	COG1620	l-lactate permease
JFT56_RS06055	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JFT56_RS06065	COG0142	geranyltranstransferase activity
JFT56_RS06070	COG1722	exodeoxyribonuclease VII activity
JFT56_RS06075	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JFT56_RS06080	COG1360	Flagellar Motor Protein
JFT56_RS06095	COG0583	DNA-binding transcription factor activity
JFT56_RS06105	COG2363	Small membrane protein
JFT56_RS06110	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
JFT56_RS06115	COG0473	3-isopropylmalate dehydrogenase activity
JFT56_RS06120	COG0823	Involved in the tonB-independent uptake of proteins
JFT56_RS06120	COG1506	peptidase
JFT56_RS06120	COG4946	Tricorn protease homolog
JFT56_RS06135	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JFT56_RS06140	COG1611	Belongs to the LOG family
JFT56_RS06170	COG0745	RESPONSE REGULATOR receiver
JFT56_RS06175	COG5002	protein histidine kinase activity
JFT56_RS06190	COG0386	Belongs to the glutathione peroxidase family
JFT56_RS06195	COG2239	Acts as a magnesium transporter
JFT56_RS06235	COG0625	glutathione transferase activity
JFT56_RS06250	COG1629	transport
JFT56_RS06255	COG2824	Alkylphosphonate utilization operon protein PhnA
JFT56_RS06260	COG1846	Transcriptional regulator
JFT56_RS06275	COG0179	Fumarylacetoacetate (FAA) hydrolase
JFT56_RS06305	COG2070	2-Nitropropane dioxygenase
JFT56_RS06305	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JFT56_RS06310	COG0604	alcohol dehydrogenase
JFT56_RS06310	COG3321	synthase
JFT56_RS06340	COG2015	COG2015, Alkyl sulfatase and related hydrolases
JFT56_RS06345	COG0583	DNA-binding transcription factor activity
JFT56_RS06360	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
JFT56_RS06400	COG3098	single-species biofilm formation
JFT56_RS06405	COG0564	pseudouridine synthase activity
JFT56_RS06410	COG0716	FMN binding
JFT56_RS06415	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JFT56_RS06415	COG1263	PTS System
JFT56_RS06420	COG0788	formyltetrahydrofolate deformylase activity
JFT56_RS06440	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JFT56_RS06445	COG0024	Methionine aminopeptidase
JFT56_RS06455	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JFT56_RS06465	COG0233	cytoplasmic translational termination
JFT56_RS06470	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JFT56_RS06475	COG0575	Belongs to the CDS family
JFT56_RS06480	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JFT56_RS06485	COG0750	zinc metalloprotease
JFT56_RS06500	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JFT56_RS06510	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JFT56_RS06525	COG0587	DNA-directed DNA polymerase activity
JFT56_RS06530	COG0037	tRNA processing
JFT56_RS06535	COG3706	GGDEF domain
JFT56_RS06545	COG1278	Cold shock
JFT56_RS06555	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JFT56_RS06565	COG1091	dTDP-4-dehydrorhamnose reductase activity
JFT56_RS06575	COG1940	carbohydrate kinase activity
JFT56_RS06580	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JFT56_RS06615	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JFT56_RS06615	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
JFT56_RS06620	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JFT56_RS06625	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JFT56_RS06650	COG0625	glutathione transferase activity
JFT56_RS06660	COG3047	cAMP biosynthetic process
JFT56_RS06695	COG1064	alcohol dehydrogenase
JFT56_RS06710	COG1960	acyl-CoA dehydrogenase activity
JFT56_RS06715	COG1024	Enoyl-CoA hydratase
JFT56_RS06720	COG1024	Enoyl-CoA hydratase
JFT56_RS06730	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS06745	COG0789	Transcriptional regulator
JFT56_RS06750	COG2608	mercury ion transmembrane transporter activity
JFT56_RS06750	COG2217	Heavy metal translocating P-type atpase
JFT56_RS06755	COG0488	(ABC) transporter
JFT56_RS06760	COG3040	lipid binding
JFT56_RS06775	COG5001	Diguanylate cyclase
JFT56_RS06775	COG2203	Gaf domain
JFT56_RS06775	COG3706	GGDEF domain
JFT56_RS06775	COG4251	negative regulation of phosphorylation
JFT56_RS06785	COG4249	Peptidase C14 caspase catalytic subunit p20
JFT56_RS06785	COG2319	Wd-40 repeat
JFT56_RS06815	COG1129	ABC transporter
JFT56_RS06815	COG0842	Transport permease protein
JFT56_RS06830	COG1960	acyl-CoA dehydrogenase activity
JFT56_RS06835	COG0022	dehydrogenase e1 component
JFT56_RS06845	COG0427	acetyl-CoA hydrolase
JFT56_RS06905	COG0573	inorganic phosphate transmembrane transporter activity
JFT56_RS06940	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JFT56_RS06960	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JFT56_RS06965	COG0596	Alpha beta hydrolase
JFT56_RS06970	COG0318	PFAM AMP-dependent synthetase and ligase
JFT56_RS06975	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JFT56_RS06995	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JFT56_RS07050	COG0583	DNA-binding transcription factor activity
JFT56_RS07060	COG2319	Wd-40 repeat
JFT56_RS07060	COG3903	Transcriptional regulator
JFT56_RS07065	COG0076	glutamate decarboxylase activity
JFT56_RS07070	COG1929	Belongs to the glycerate kinase type-1 family
JFT56_RS07085	COG3835	regulator
JFT56_RS07095	COG1573	uracil-dna glycosylase
JFT56_RS07150	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JFT56_RS07170	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JFT56_RS07210	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JFT56_RS07215	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JFT56_RS07225	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JFT56_RS07230	COG3585	molybdate ion transport
JFT56_RS07240	COG4172	Belongs to the ABC transporter superfamily
JFT56_RS07250	COG4171	peptide transport system, permease
JFT56_RS07255	COG4168	peptide transport system, permease
JFT56_RS07260	COG0747	negative chemotaxis
JFT56_RS07265	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JFT56_RS07270	COG1842	Phage shock protein A
JFT56_RS07285	COG3106	COG3106 Predicted ATPase
JFT56_RS07290	COG3768	UPF0283 membrane protein
JFT56_RS07295	COG0626	cystathionine gamma-synthase activity
JFT56_RS07300	COG1596	polysaccharide export
JFT56_RS07300	COG1555	photosystem II stabilization
JFT56_RS07315	COG0123	including yeast histone deacetylase and acetoin utilization protein
JFT56_RS07330	COG0730	response to heat
JFT56_RS07335	COG1199	ATP-dependent helicase activity
JFT56_RS07340	COG0417	DNA replication proofreading
JFT56_RS07365	COG0811	peptide transport
JFT56_RS07370	COG0811	peptide transport
JFT56_RS07375	COG0848	biopolymer transport protein
JFT56_RS07400	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JFT56_RS07410	COG2501	S4 domain
JFT56_RS07420	COG0583	DNA-binding transcription factor activity
JFT56_RS07425	COG0730	response to heat
JFT56_RS07435	COG0419	ATPase involved in DNA repair
JFT56_RS07440	COG0739	heme binding
JFT56_RS07450	COG1451	nucleotide metabolic process
JFT56_RS07460	COG0513	Belongs to the DEAD box helicase family
JFT56_RS07465	COG1752	Esterase of the alpha-beta hydrolase superfamily
JFT56_RS07480	COG0602	queuosine metabolic process
JFT56_RS07505	COG4628	conserved protein (DUF2132)
JFT56_RS07510	COG1966	Carbon starvation protein
JFT56_RS07515	COG3279	Response regulator of the LytR AlgR family
JFT56_RS07520	COG3275	phosphorelay sensor kinase activity
JFT56_RS07560	COG0658	competence protein
JFT56_RS07560	COG2333	competence protein COMEC
JFT56_RS07625	COG2925	Exonuclease
JFT56_RS07635	COG2226	methyltransferase
JFT56_RS07640	COG1278	Cold shock
JFT56_RS07645	COG0659	secondary active sulfate transmembrane transporter activity
JFT56_RS07650	COG1530	ribonuclease E activity
JFT56_RS07660	COG0546	phosphoglycolate phosphatase activity
JFT56_RS07665	COG0424	maF-like protein
JFT56_RS07670	COG1399	metal-binding, possibly nucleic acid-binding protein
JFT56_RS07685	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JFT56_RS07690	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JFT56_RS07695	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS07700	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JFT56_RS07705	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JFT56_RS07710	COG1607	acyl-coa hydrolase
JFT56_RS07715	COG2084	Dehydrogenase
JFT56_RS07725	COG1960	acyl-CoA dehydrogenase activity
JFT56_RS07735	COG4667	esterase of the alpha-beta hydrolase superfamily
JFT56_RS07740	COG0367	asparagine synthase
JFT56_RS07755	COG0647	UMP catabolic process
JFT56_RS07760	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JFT56_RS07765	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JFT56_RS07780	COG2056	Na+-H+ antiporter family
JFT56_RS07785	COG0450	alkyl hydroperoxide reductase
JFT56_RS07800	COG2885	chlorophyll binding
JFT56_RS07805	COG1505	serine-type exopeptidase activity
JFT56_RS07810	COG0824	Thioesterase
JFT56_RS07815	COG0811	peptide transport
JFT56_RS07835	COG2885	chlorophyll binding
JFT56_RS07840	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JFT56_RS07895	COG1061	Type III restriction enzyme res subunit
JFT56_RS07905	COG5002	protein histidine kinase activity
JFT56_RS07910	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JFT56_RS07920	COG2226	methyltransferase
JFT56_RS07930	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
JFT56_RS07935	COG3340	Belongs to the peptidase S51 family
JFT56_RS07940	COG0501	Belongs to the peptidase M48B family
JFT56_RS07945	COG0339	signal peptide processing
JFT56_RS07975	COG0405	Gamma-glutamyltransferase
JFT56_RS07985	COG1280	lysine exporter protein (LysE YggA)
JFT56_RS08000	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JFT56_RS08005	COG0583	DNA-binding transcription factor activity
JFT56_RS08035	COG0318	PFAM AMP-dependent synthetase and ligase
JFT56_RS08070	COG3806	Anti-sigma factor
JFT56_RS08075	COG1595	DNA-templated transcription, initiation
JFT56_RS08085	COG2226	methyltransferase
JFT56_RS08090	COG0835	chemotaxis
JFT56_RS08090	COG0784	Response regulator, receiver
JFT56_RS08105	COG2951	lytic endotransglycosylase activity
JFT56_RS08115	COG0308	aminopeptidase N
JFT56_RS08145	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JFT56_RS08155	COG3220	belongs to the UPF0276 family
JFT56_RS08165	COG2832	Protein of unknown function (DUF454)
JFT56_RS08170	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JFT56_RS08175	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JFT56_RS08190	COG0326	Molecular chaperone. Has ATPase activity
JFT56_RS08195	COG3118	belongs to the thioredoxin family
JFT56_RS08205	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JFT56_RS08210	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JFT56_RS08215	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JFT56_RS08240	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JFT56_RS08250	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JFT56_RS08285	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
JFT56_RS08295	COG0339	signal peptide processing
JFT56_RS08310	COG0456	acetyltransferase
JFT56_RS08355	COG3083	sulfuric ester hydrolase activity
JFT56_RS08360	COG3082	Protein of unknown function (DUF1414)
JFT56_RS08370	COG1858	cytochrome C peroxidase
JFT56_RS08390	COG3102	Protein conserved in bacteria
JFT56_RS08400	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JFT56_RS08405	COG0248	Ppx GppA phosphatase
JFT56_RS08410	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JFT56_RS08415	COG0443	Heat shock 70 kDa protein
JFT56_RS08430	COG2205	protein histidine kinase activity
JFT56_RS08435	COG0745	RESPONSE REGULATOR receiver
JFT56_RS08440	COG2304	oxidoreductase activity
JFT56_RS08450	COG3706	GGDEF domain
JFT56_RS08470	COG3085	chromosome segregation
JFT56_RS08475	COG0583	DNA-binding transcription factor activity
JFT56_RS08480	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JFT56_RS08485	COG1793	dna ligase
JFT56_RS08500	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JFT56_RS08510	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JFT56_RS08515	COG0113	porphobilinogen synthase activity
JFT56_RS08520	COG1214	PFAM Peptidase M22, glycoprotease
JFT56_RS08540	COG2267	carboxylic ester hydrolase activity
JFT56_RS08545	COG0318	PFAM AMP-dependent synthetase and ligase
JFT56_RS08550	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JFT56_RS08560	COG2894	cell division
JFT56_RS08585	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JFT56_RS08590	COG0513	Belongs to the DEAD box helicase family
JFT56_RS08605	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JFT56_RS08615	COG0741	lytic transglycosylase activity
JFT56_RS08615	COG1388	LysM domain
JFT56_RS08625	COG2226	methyltransferase
JFT56_RS08640	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JFT56_RS08730	COG0121	glutamine amidotransferase
JFT56_RS08745	COG0242	peptide deformylase activity
JFT56_RS08775	COG0346	lactoylglutathione lyase activity
JFT56_RS08780	COG1523	belongs to the glycosyl hydrolase 13 family
JFT56_RS08785	COG0366	Alpha amylase catalytic
JFT56_RS08795	COG0366	Alpha amylase catalytic
JFT56_RS08805	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JFT56_RS08805	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JFT56_RS08810	COG5001	Diguanylate cyclase
JFT56_RS08815	COG1181	Belongs to the D-alanine--D-alanine ligase family
JFT56_RS08825	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JFT56_RS08830	COG0583	DNA-binding transcription factor activity
JFT56_RS08845	COG1760	l-serine dehydratase
JFT56_RS08850	COG1472	Belongs to the glycosyl hydrolase 3 family
JFT56_RS08875	COG1254	Belongs to the acylphosphatase family
JFT56_RS08885	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JFT56_RS08895	COG4591	ABC-type transport system involved in lipoprotein release permease component
JFT56_RS08905	COG4591	ABC-type transport system involved in lipoprotein release permease component
JFT56_RS08935	COG0822	iron-sulfur transferase activity
JFT56_RS08965	COG2975	iron-sulfur cluster assembly
JFT56_RS08980	COG0071	Belongs to the small heat shock protein (HSP20) family
JFT56_RS08990	COG0028	Belongs to the TPP enzyme family
JFT56_RS08995	COG2814	Major facilitator Superfamily
JFT56_RS09005	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JFT56_RS09060	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JFT56_RS09080	COG0640	Transcriptional regulator
JFT56_RS09100	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JFT56_RS09120	COG1454	alcohol dehydrogenase
JFT56_RS09125	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JFT56_RS09130	COG0288	reversible hydration of carbon dioxide
JFT56_RS09140	COG1876	peptidase activity
JFT56_RS09150	COG1393	Belongs to the ArsC family
JFT56_RS09160	COG1643	Atp-dependent helicase
JFT56_RS09165	COG2223	nitrite transmembrane transporter activity
JFT56_RS09170	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JFT56_RS09175	COG2181	nitrate reductase activity
JFT56_RS09180	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JFT56_RS09185	COG1140	nitrate reductase beta subunit
JFT56_RS09190	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JFT56_RS09200	COG3062	negative regulation of establishment of protein localization
JFT56_RS09205	COG0243	molybdopterin cofactor binding
JFT56_RS09210	COG3043	anaerobic respiration
JFT56_RS09215	COG3005	denitrification pathway
JFT56_RS09220	COG2850	peptidyl-arginine hydroxylation
JFT56_RS09235	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JFT56_RS09245	COG0840	transmembrane signaling receptor activity
JFT56_RS09265	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JFT56_RS09265	COG1199	ATP-dependent helicase activity
JFT56_RS09275	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JFT56_RS09280	COG1074	ATP-dependent DNA helicase activity
JFT56_RS09285	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JFT56_RS09300	COG0714	Associated with various cellular activities
JFT56_RS09315	COG1322	Protein conserved in bacteria
JFT56_RS09320	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JFT56_RS09330	COG0346	lactoylglutathione lyase activity
JFT56_RS09345	COG2194	sulfuric ester hydrolase activity
JFT56_RS09355	COG0045	succinate-CoA ligase (ADP-forming) activity
JFT56_RS09355	COG1042	CoA-binding domain protein
JFT56_RS09355	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JFT56_RS09360	COG0840	transmembrane signaling receptor activity
JFT56_RS09390	COG0840	transmembrane signaling receptor activity
JFT56_RS09400	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
JFT56_RS09425	COG0488	(ABC) transporter
JFT56_RS09455	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JFT56_RS09480	COG2878	Part of a membrane complex involved in electron transport
JFT56_RS09485	COG4657	Part of a membrane complex involved in electron transport
JFT56_RS09520	COG0556	nucleotide-excision repair
JFT56_RS09530	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JFT56_RS09535	COG0602	queuosine metabolic process
JFT56_RS09595	COG1960	acyl-CoA dehydrogenase activity
JFT56_RS09600	COG0469	pyruvate kinase activity
JFT56_RS09605	COG1737	Transcriptional regulator
JFT56_RS09610	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JFT56_RS09615	COG0363	glucosamine-6-phosphate deaminase activity
JFT56_RS09620	COG0129	dihydroxy-acid dehydratase activity
JFT56_RS09625	COG0800	Aldolase
JFT56_RS09635	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
JFT56_RS09640	COG0436	Aminotransferase
JFT56_RS09645	COG1757	Na H antiporter
JFT56_RS09680	COG0596	Alpha beta hydrolase
JFT56_RS09685	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JFT56_RS09690	COG0033	Phosphoglucomutase
JFT56_RS09695	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JFT56_RS09710	COG0022	dehydrogenase e1 component
JFT56_RS09720	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JFT56_RS09725	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JFT56_RS09755	COG1448	Aminotransferase
JFT56_RS09765	COG2992	FlgJ-related protein
JFT56_RS09775	COG0037	tRNA processing
JFT56_RS09780	COG0589	response to stress
JFT56_RS09785	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JFT56_RS09800	COG2217	Heavy metal translocating P-type atpase
JFT56_RS09810	COG2010	Cytochrome c
JFT56_RS09825	COG3278	Belongs to the heme-copper respiratory oxidase family
JFT56_RS09835	COG3437	response regulator, receiver
JFT56_RS09835	COG0784	Response regulator, receiver
JFT56_RS09980	COG2814	Major facilitator Superfamily
JFT56_RS09985	COG0583	DNA-binding transcription factor activity
JFT56_RS09990	COG0670	Belongs to the BI1 family
JFT56_RS10000	COG2923	Belongs to the DsrF TusC family
JFT56_RS10010	COG2920	part of a sulfur-relay system
JFT56_RS10015	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JFT56_RS10025	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JFT56_RS10035	COG0531	amino acid
JFT56_RS10035	COG1674	ftsk spoiiie
JFT56_RS10045	COG0686	Belongs to the AlaDH PNT family
JFT56_RS10050	COG0492	ferredoxin-NADP+ reductase activity
JFT56_RS10055	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JFT56_RS10060	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JFT56_RS10090	COG0307	riboflavin synthase, alpha
JFT56_RS10095	COG0534	Mate efflux family protein
JFT56_RS10120	COG2116	formate transmembrane transporter activity
JFT56_RS10125	COG2815	serine threonine protein kinase
JFT56_RS10125	COG0515	serine threonine protein kinase
JFT56_RS10130	COG1648	precorrin-2 dehydrogenase activity
JFT56_RS10130	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JFT56_RS10135	COG2146	nitrite reductase [NAD(P)H] activity
JFT56_RS10140	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JFT56_RS10140	COG2146	nitrite reductase [NAD(P)H] activity
JFT56_RS10150	COG3507	Belongs to the glycosyl hydrolase 43 family
JFT56_RS10155	COG2211	Major facilitator Superfamily
JFT56_RS10165	COG3940	Belongs to the glycosyl hydrolase 43 family
JFT56_RS10170	COG3940	Belongs to the glycosyl hydrolase 43 family
JFT56_RS10175	COG1172	Belongs to the binding-protein-dependent transport system permease family
JFT56_RS10180	COG1172	Belongs to the binding-protein-dependent transport system permease family
JFT56_RS10185	COG1129	ABC transporter
JFT56_RS10190	COG1879	ABC-type sugar transport system periplasmic component
JFT56_RS10210	COG3507	Belongs to the glycosyl hydrolase 43 family
JFT56_RS10215	COG2186	Transcriptional regulator
JFT56_RS10220	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JFT56_RS10235	COG1069	ribulokinase activity
JFT56_RS10245	COG3507	Belongs to the glycosyl hydrolase 43 family
JFT56_RS10255	COG4574	serine-type endopeptidase inhibitor activity
JFT56_RS10265	COG0514	ATP-dependent DNA helicase (RecQ)
JFT56_RS10280	COG1538	Outer membrane efflux protein
JFT56_RS10290	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS10295	COG3148	PFAM DTW domain containing protein
JFT56_RS10305	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JFT56_RS10320	COG2027	D-alanyl-D-alanine carboxypeptidase
JFT56_RS10325	COG1960	acyl-CoA dehydrogenase activity
JFT56_RS10330	COG3122	Protein conserved in bacteria
JFT56_RS10340	COG0284	orotidine-5'-phosphate decarboxylase activity
JFT56_RS10345	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JFT56_RS10350	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
JFT56_RS10360	COG0539	negative regulation of cytoplasmic translation
JFT56_RS10370	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JFT56_RS10375	COG1448	Aminotransferase
JFT56_RS10385	COG3976	FMN-binding domain protein
JFT56_RS10385	COG1053	succinate dehydrogenase
JFT56_RS10425	COG2095	MarC family integral membrane protein
JFT56_RS10430	COG1454	alcohol dehydrogenase
JFT56_RS10430	COG1012	belongs to the aldehyde dehydrogenase family
JFT56_RS10445	COG1506	peptidase
JFT56_RS10445	COG0823	Involved in the tonB-independent uptake of proteins
JFT56_RS10475	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JFT56_RS10495	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JFT56_RS10500	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JFT56_RS10505	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JFT56_RS10515	COG1902	pentaerythritol trinitrate reductase activity
JFT56_RS10515	COG0446	pyridine nucleotide-disulphide oxidoreductase
JFT56_RS10520	COG0616	signal peptide processing
JFT56_RS10525	COG0252	asparaginase activity
JFT56_RS10530	COG3139	Protein of unknown function (DUF1315)
JFT56_RS10540	COG2866	Carboxypeptidase
JFT56_RS10545	COG0745	RESPONSE REGULATOR receiver
JFT56_RS10570	COG0217	transcriptional regulatory protein
JFT56_RS10585	COG2226	methyltransferase
JFT56_RS10615	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JFT56_RS10630	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JFT56_RS10640	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JFT56_RS10650	COG1272	protein, Hemolysin III
JFT56_RS10655	COG0494	nUDIX hydrolase
JFT56_RS10670	COG1082	Xylose isomerase domain protein TIM barrel
JFT56_RS10715	COG0729	surface antigen
JFT56_RS10735	COG3108	Peptidase M15
JFT56_RS10740	COG2989	Protein conserved in bacteria
JFT56_RS10750	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
JFT56_RS10755	COG0642	Histidine kinase
JFT56_RS10760	COG0745	RESPONSE REGULATOR receiver
JFT56_RS10780	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JFT56_RS10785	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
JFT56_RS10790	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
JFT56_RS10795	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
JFT56_RS10800	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JFT56_RS10810	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
JFT56_RS10815	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JFT56_RS10820	COG0298	carbon dioxide binding
JFT56_RS10825	COG0409	Hydrogenase expression formation protein
JFT56_RS10830	COG0309	Hydrogenase expression formation protein (HypE)
JFT56_RS10840	COG1560	Kdo2-lipid A biosynthetic process
JFT56_RS10850	COG0072	phenylalanine-tRNA ligase activity
JFT56_RS10850	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JFT56_RS10860	COG0840	transmembrane signaling receptor activity
JFT56_RS10870	COG1199	ATP-dependent helicase activity
JFT56_RS10880	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JFT56_RS10885	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JFT56_RS10890	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JFT56_RS10890	COG0131	Imidazoleglycerol-phosphate dehydratase
JFT56_RS10895	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JFT56_RS10910	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JFT56_RS10910	COG0140	phosphoribosyl-ATP diphosphatase activity
JFT56_RS10915	COG0814	amino acid
JFT56_RS10995	COG0308	aminopeptidase N
JFT56_RS11000	COG0793	Belongs to the peptidase S41A family
JFT56_RS11005	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
JFT56_RS11010	COG1956	GAF domain-containing protein
JFT56_RS11015	COG3141	response to X-ray
JFT56_RS11020	COG2995	paraquat-inducible protein a
JFT56_RS11025	COG2995	paraquat-inducible protein a
JFT56_RS11030	COG3008	intermembrane lipid transfer
JFT56_RS11035	COG2715	membrane protein required for spore maturation
JFT56_RS11045	COG0084	hydrolase, TatD family'
JFT56_RS11060	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JFT56_RS11065	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JFT56_RS11070	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JFT56_RS11085	COG0489	protein tyrosine kinase activity
JFT56_RS11105	COG3134	Outer membrane lipoprotein
JFT56_RS11110	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JFT56_RS11115	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JFT56_RS11120	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JFT56_RS11125	COG0542	response to heat
JFT56_RS11135	COG1278	Cold shock
JFT56_RS11145	COG1187	pseudouridine synthase activity
JFT56_RS11165	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JFT56_RS11170	COG2850	peptidyl-arginine hydroxylation
JFT56_RS11190	COG1846	Transcriptional regulator
JFT56_RS11200	COG0247	lactate metabolic process
JFT56_RS11200	COG0277	FAD linked oxidase domain protein
JFT56_RS11205	COG0574	Belongs to the PEP-utilizing enzyme family
JFT56_RS11205	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JFT56_RS11215	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JFT56_RS11220	COG1607	acyl-coa hydrolase
JFT56_RS11255	COG1301	dicarboxylic acid transport
JFT56_RS11280	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JFT56_RS11285	COG0598	Magnesium transport protein CorA
JFT56_RS11300	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JFT56_RS11305	COG0735	belongs to the Fur family
JFT56_RS11315	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JFT56_RS11330	COG0508	dehydrogenase complex catalyzes the overall conversion of
JFT56_RS11335	COG0567	Dehydrogenase, E1 component
JFT56_RS11345	COG1053	succinate dehydrogenase
JFT56_RS11350	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JFT56_RS11365	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS11395	COG2814	Major facilitator Superfamily
JFT56_RS11400	COG0583	DNA-binding transcription factor activity
JFT56_RS11410	COG1946	Acyl-CoA thioesterase
JFT56_RS11415	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS11420	COG1575	Belongs to the MenA family. Type 1 subfamily
JFT56_RS11425	COG3384	dioxygenase
JFT56_RS11435	COG0583	DNA-binding transcription factor activity
JFT56_RS11455	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JFT56_RS11460	COG2076	Multidrug Resistance protein
JFT56_RS11480	COG1960	acyl-CoA dehydrogenase activity
JFT56_RS11485	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JFT56_RS11490	COG1024	Enoyl-CoA hydratase
JFT56_RS11495	COG4770	biotin carboxylase activity
JFT56_RS11505	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JFT56_RS11510	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JFT56_RS11550	COG4773	Receptor
JFT56_RS11565	COG0813	purine-nucleoside phosphorylase activity
JFT56_RS11585	COG0537	adenosine 5'-monophosphoramidase activity
JFT56_RS11595	COG2197	response regulator
JFT56_RS11605	COG1053	succinate dehydrogenase
JFT56_RS11620	COG2133	pyrroloquinoline quinone binding
JFT56_RS11630	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS11635	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS11640	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JFT56_RS11650	COG2716	regulation of RNA biosynthetic process
JFT56_RS11655	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JFT56_RS11660	COG1279	arginine transmembrane transporter activity
JFT56_RS11670	COG0628	permease
JFT56_RS11680	COG4783	chaperone-mediated protein folding
JFT56_RS11685	COG1393	Belongs to the ArsC family
JFT56_RS11710	COG2233	PERMEase
JFT56_RS11715	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JFT56_RS11725	COG2766	serine protein kinase
JFT56_RS11730	COG2718	Belongs to the UPF0229 family
JFT56_RS11735	COG2719	SpoVR family
JFT56_RS11740	COG2186	Transcriptional regulator
JFT56_RS11755	COG2205	protein histidine kinase activity
JFT56_RS11815	COG1131	(ABC) transporter
JFT56_RS11820	COG0776	regulation of translation
JFT56_RS11845	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JFT56_RS11855	COG2197	response regulator
JFT56_RS11865	COG1067	ATP-dependent peptidase activity
JFT56_RS11875	COG3130	regulation of translation
JFT56_RS11885	COG0488	(ABC) transporter
JFT56_RS11895	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JFT56_RS11895	COG0116	Belongs to the methyltransferase superfamily
JFT56_RS11920	COG0484	heat shock protein binding
JFT56_RS11945	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JFT56_RS11950	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JFT56_RS11960	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JFT56_RS12000	COG1196	nuclear chromosome segregation
JFT56_RS12015	COG1714	RDD family
JFT56_RS12020	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JFT56_RS12040	COG0583	DNA-binding transcription factor activity
JFT56_RS12045	COG2116	formate transmembrane transporter activity
JFT56_RS12055	COG1882	Formate acetyltransferase
JFT56_RS12060	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JFT56_RS12065	COG3092	negative regulation of chromosome organization
JFT56_RS12070	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JFT56_RS12075	COG0280	phosphate acetyltransferase
JFT56_RS12075	COG0857	belongs to the CobB CobQ family
JFT56_RS12090	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JFT56_RS12095	COG0628	permease
JFT56_RS12100	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JFT56_RS12105	COG1090	epimerase
JFT56_RS12110	COG0786	glutamate:sodium symporter activity
JFT56_RS12115	COG0681	Belongs to the peptidase S26 family
JFT56_RS12120	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JFT56_RS12125	COG4181	ATPase activity
JFT56_RS12155	COG0616	signal peptide processing
JFT56_RS12160	COG2267	carboxylic ester hydrolase activity
JFT56_RS12165	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS12170	COG1187	pseudouridine synthase activity
JFT56_RS12175	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JFT56_RS12180	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JFT56_RS12185	COG0009	L-threonylcarbamoyladenylate synthase
JFT56_RS12190	COG0613	PHP domain protein
JFT56_RS12195	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JFT56_RS12200	COG0512	Glutamine amidotransferase of anthranilate synthase
JFT56_RS12205	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JFT56_RS12210	COG0134	indole-3-glycerol-phosphate synthase activity
JFT56_RS12210	COG0135	phosphoribosylanthranilate isomerase activity
JFT56_RS12215	COG0133	tryptophan synthase activity
JFT56_RS12235	COG3486	L-lysine 6-monooxygenase (NADPH) activity
JFT56_RS12260	COG2917	probably involved in intracellular septation
JFT56_RS12265	COG2350	Protein conserved in bacteria
JFT56_RS12270	COG0708	Exodeoxyribonuclease III
JFT56_RS12275	COG3547	Transposase (IS116 IS110 IS902 family)
JFT56_RS12310	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JFT56_RS12315	COG0840	transmembrane signaling receptor activity
JFT56_RS12320	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JFT56_RS12330	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JFT56_RS12335	COG1115	amino acid carrier protein
JFT56_RS12340	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JFT56_RS12345	COG1286	toxin biosynthetic process
JFT56_RS12350	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JFT56_RS12355	COG0285	dihydrofolate synthase activity
JFT56_RS12370	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JFT56_RS12375	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JFT56_RS12380	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JFT56_RS12405	COG2211	Major facilitator Superfamily
JFT56_RS12415	COG2890	protein-(glutamine-N5) methyltransferase activity
JFT56_RS12425	COG2062	phosphohistidine phosphatase, SixA
JFT56_RS12430	COG1025	Belongs to the peptidase M16 family
JFT56_RS12435	COG3300	MHYT domain
JFT56_RS12435	COG5001	Diguanylate cyclase
JFT56_RS12455	COG0714	Associated with various cellular activities
JFT56_RS12475	COG2304	oxidoreductase activity
JFT56_RS12485	COG1595	DNA-templated transcription, initiation
JFT56_RS12500	COG2067	long-chain fatty acid transport protein
JFT56_RS12515	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS12530	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JFT56_RS12535	COG1404	Belongs to the peptidase S8 family
JFT56_RS12540	COG4681	YaeQ
JFT56_RS12545	COG1648	precorrin-2 dehydrogenase activity
JFT56_RS12545	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JFT56_RS12555	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JFT56_RS12560	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JFT56_RS12565	COG1862	Preprotein translocase
JFT56_RS12590	COG0564	pseudouridine synthase activity
JFT56_RS12600	COG0673	inositol 2-dehydrogenase activity
JFT56_RS12615	COG0835	chemotaxis
JFT56_RS12615	COG0784	Response regulator, receiver
JFT56_RS12625	COG0513	Belongs to the DEAD box helicase family
JFT56_RS12630	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JFT56_RS12640	COG1132	(ABC) transporter
JFT56_RS12690	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JFT56_RS12730	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JFT56_RS12740	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JFT56_RS12760	COG1435	thymidine kinase activity
JFT56_RS12770	COG0339	signal peptide processing
JFT56_RS12775	COG1757	Na H antiporter
JFT56_RS12795	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JFT56_RS12810	COG1720	tRNA m6t6A37 methyltransferase activity
JFT56_RS12815	COG0110	maltose O-acetyltransferase activity
JFT56_RS12845	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JFT56_RS12850	COG1902	pentaerythritol trinitrate reductase activity
JFT56_RS12860	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JFT56_RS12865	COG4191	Histidine kinase
JFT56_RS12865	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JFT56_RS12880	COG1088	dTDP-glucose 4,6-dehydratase activity
JFT56_RS12920	COG0110	maltose O-acetyltransferase activity
JFT56_RS12925	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS12930	COG1083	cytidylyl-transferase
JFT56_RS12935	COG0673	inositol 2-dehydrogenase activity
JFT56_RS12940	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JFT56_RS12940	COG0517	IMP dehydrogenase activity
JFT56_RS12950	COG2089	acid synthase
JFT56_RS12955	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JFT56_RS12960	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JFT56_RS12965	COG1086	Polysaccharide biosynthesis protein
JFT56_RS12970	COG1215	transferase activity, transferring glycosyl groups
JFT56_RS12975	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JFT56_RS12995	COG0250	Participates in transcription elongation, termination and antitermination
JFT56_RS13000	COG3104	oligopeptide transport
JFT56_RS13010	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JFT56_RS13020	COG2257	FlhB HrpN YscU SpaS Family
JFT56_RS13030	COG0835	chemotaxis
JFT56_RS13040	COG1192	Involved in chromosome partitioning
JFT56_RS13055	COG0643	Histidine kinase
JFT56_RS13055	COG2198	Histidine kinase
JFT56_RS13055	COG0784	Response regulator, receiver
JFT56_RS13060	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JFT56_RS13100	COG1987	bacterial-type flagellum assembly
JFT56_RS13150	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JFT56_RS13160	COG1677	Flagellar hook-basal body complex protein FliE
JFT56_RS13180	COG1516	flagellar protein fliS
JFT56_RS13195	COG1334	flagellar protein FlaG
JFT56_RS13200	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JFT56_RS13210	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JFT56_RS13220	COG3951	Flagellar rod assembly protein muramidase FlgJ
JFT56_RS13220	COG1705	Flagellar rod assembly protein muramidase FlgJ
JFT56_RS13235	COG4786	Flagellar basal body rod
JFT56_RS13240	COG4786	Flagellar basal body rod
JFT56_RS13245	COG1749	Flagellar hook protein flgE
JFT56_RS13260	COG1815	bacterial-type flagellum-dependent cell motility
JFT56_RS13265	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JFT56_RS13270	COG0835	chemotaxis
JFT56_RS13270	COG0784	Response regulator, receiver
JFT56_RS13360	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JFT56_RS13365	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JFT56_RS13370	COG2089	acid synthase
JFT56_RS13380	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JFT56_RS13385	COG0673	inositol 2-dehydrogenase activity
JFT56_RS13390	COG1083	cytidylyl-transferase
JFT56_RS13395	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS13400	COG0110	maltose O-acetyltransferase activity
JFT56_RS13450	COG4890	Cyd operon protein YbgT
JFT56_RS13455	COG1294	oxidase, subunit
JFT56_RS13465	COG0047	phosphoribosylformylglycinamidine synthase activity
JFT56_RS13465	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JFT56_RS13475	COG0590	tRNA wobble adenosine to inosine editing
JFT56_RS13515	COG1160	GTP binding
JFT56_RS13520	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JFT56_RS13525	COG2976	Protein conserved in bacteria
JFT56_RS13540	COG1426	Protein conserved in bacteria
JFT56_RS13555	COG1253	flavin adenine dinucleotide binding
JFT56_RS13560	COG0737	Belongs to the 5'-nucleotidase family
JFT56_RS13565	COG0583	DNA-binding transcription factor activity
JFT56_RS13570	COG2259	Doxx family
JFT56_RS13575	COG1741	Belongs to the pirin family
JFT56_RS13595	COG3530	Putative quorum-sensing-regulated virulence factor
JFT56_RS13620	COG3706	GGDEF domain
JFT56_RS13620	COG2203	Gaf domain
JFT56_RS13620	COG4251	negative regulation of phosphorylation
JFT56_RS13620	COG5001	Diguanylate cyclase
JFT56_RS13625	COG3228	Belongs to the MtfA family
JFT56_RS13640	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
JFT56_RS13650	COG0668	transmembrane transport
JFT56_RS13655	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JFT56_RS13660	COG2860	membrane
JFT56_RS13675	COG0023	Translation Initiation Factor
JFT56_RS13680	COG1678	Uncharacterized ACR, COG1678
JFT56_RS13685	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JFT56_RS13690	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JFT56_RS13710	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JFT56_RS13715	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JFT56_RS13720	COG0762	integral membrane protein
JFT56_RS13735	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JFT56_RS13740	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JFT56_RS13750	COG0583	DNA-binding transcription factor activity
JFT56_RS13765	COG3171	Protein conserved in bacteria
JFT56_RS13770	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JFT56_RS13775	COG1194	a g-specific adenine glycosylase
JFT56_RS13790	COG3038	cytochrome b561
JFT56_RS13835	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JFT56_RS13850	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
JFT56_RS13860	COG0415	Belongs to the DNA photolyase family
JFT56_RS13865	COG0789	Transcriptional regulator
JFT56_RS13880	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JFT56_RS13885	COG1477	protein flavinylation
JFT56_RS13895	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
JFT56_RS13900	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
JFT56_RS13905	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
JFT56_RS13915	COG2205	protein histidine kinase activity
JFT56_RS13925	COG0513	Belongs to the DEAD box helicase family
JFT56_RS13935	COG1067	ATP-dependent peptidase activity
JFT56_RS13940	COG1902	pentaerythritol trinitrate reductase activity
JFT56_RS13955	COG0217	transcriptional regulatory protein
JFT56_RS13970	COG4585	Histidine kinase
JFT56_RS13975	COG2197	response regulator
JFT56_RS13985	COG0840	transmembrane signaling receptor activity
JFT56_RS14015	COG0793	Belongs to the peptidase S41A family
JFT56_RS14015	COG4946	Tricorn protease homolog
JFT56_RS14020	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JFT56_RS14025	COG0083	homoserine kinase activity
JFT56_RS14030	COG0460	homoserine dehydrogenase
JFT56_RS14030	COG0527	aspartate kinase activity
JFT56_RS14045	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
JFT56_RS14060	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JFT56_RS14065	COG2927	DNA polymerase III (CHI subunit)
JFT56_RS14070	COG0525	valine-tRNA ligase activity
JFT56_RS14125	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JFT56_RS14130	COG2137	regulation of response to DNA damage stimulus
JFT56_RS14135	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JFT56_RS14145	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JFT56_RS14150	COG1388	LysM domain
JFT56_RS14150	COG4942	peptidase
JFT56_RS14155	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JFT56_RS14165	COG0585	pseudouridine synthase activity
JFT56_RS14175	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JFT56_RS14180	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JFT56_RS14195	COG3956	TIGRFAM MazG family protein
JFT56_RS14205	COG0154	amidase activity
JFT56_RS14220	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JFT56_RS14245	COG0583	DNA-binding transcription factor activity
JFT56_RS14250	COG0679	Auxin Efflux Carrier
JFT56_RS14255	COG0497	DNA recombination
JFT56_RS14260	COG0589	response to stress
JFT56_RS14265	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JFT56_RS14270	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JFT56_RS14275	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JFT56_RS14295	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JFT56_RS14295	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JFT56_RS14305	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JFT56_RS14310	COG0488	(ABC) transporter
JFT56_RS14320	COG0583	DNA-binding transcription factor activity
JFT56_RS14340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS14345	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS14380	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS14385	COG1309	transcriptional regulator
JFT56_RS14400	COG0583	DNA-binding transcription factor activity
JFT56_RS14405	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JFT56_RS14410	COG0824	Thioesterase
JFT56_RS14415	COG5001	Diguanylate cyclase
JFT56_RS14425	COG0826	peptidase U32
JFT56_RS14430	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JFT56_RS14435	COG3154	lipid carrier protein
JFT56_RS14440	COG0826	peptidase U32
JFT56_RS14445	COG0826	peptidase U32
JFT56_RS14455	COG3314	Sporulation integral membrane protein YlbJ
JFT56_RS14460	COG3547	Transposase (IS116 IS110 IS902 family)
JFT56_RS14490	COG2252	PERMEase
JFT56_RS14515	COG0560	Phosphoserine phosphatase
JFT56_RS14525	COG0813	purine-nucleoside phosphorylase activity
JFT56_RS14535	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JFT56_RS14550	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JFT56_RS14555	COG0084	hydrolase, TatD family'
JFT56_RS14565	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JFT56_RS14595	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JFT56_RS14605	COG0195	Participates in both transcription termination and antitermination
JFT56_RS14625	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JFT56_RS14640	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JFT56_RS14650	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JFT56_RS14655	COG1534	Rna-binding protein
JFT56_RS14660	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JFT56_RS14665	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JFT56_RS14730	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JFT56_RS14740	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JFT56_RS14745	COG1702	phosphate starvation-inducible protein PhoH
JFT56_RS14750	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JFT56_RS14755	COG4535	Mg2 and Co2 transporter CorC
JFT56_RS14760	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JFT56_RS14775	COG0495	leucyl-tRNA aminoacylation
JFT56_RS14780	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
JFT56_RS14795	COG0799	negative regulation of ribosome biogenesis
JFT56_RS14805	COG0768	penicillin binding
JFT56_RS14810	COG0772	Belongs to the SEDS family
JFT56_RS14815	COG2951	lytic endotransglycosylase activity
JFT56_RS14820	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JFT56_RS14825	COG1686	Belongs to the peptidase S11 family
JFT56_RS14835	COG0321	lipoyl(octanoyl) transferase activity
JFT56_RS14855	COG0783	Belongs to the Dps family
JFT56_RS14880	COG0653	protein targeting
JFT56_RS14900	COG2354	Protein conserved in bacteria
JFT56_RS14925	COG2239	Acts as a magnesium transporter
JFT56_RS14940	COG0564	pseudouridine synthase activity
JFT56_RS14945	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JFT56_RS14950	COG0505	Belongs to the CarA family
JFT56_RS14960	COG0545	Peptidyl-prolyl cis-trans isomerase
JFT56_RS14965	COG0501	Belongs to the peptidase M48B family
JFT56_RS14975	COG0513	Belongs to the DEAD box helicase family
JFT56_RS15005	COG0443	Heat shock 70 kDa protein
JFT56_RS15015	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JFT56_RS15025	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JFT56_RS15030	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JFT56_RS15035	COG2252	PERMEase
JFT56_RS15040	COG4773	Receptor
JFT56_RS15045	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JFT56_RS15050	COG2195	Cleaves the N-terminal amino acid of tripeptides
JFT56_RS15065	COG2193	ferroxidase activity
JFT56_RS15075	COG2991	Protein conserved in bacteria
JFT56_RS15080	COG1477	protein flavinylation
JFT56_RS15085	COG2871	sodium ion transport
JFT56_RS15090	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS15100	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS15105	COG1805	sodium ion transport
JFT56_RS15110	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JFT56_RS15125	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
JFT56_RS15130	COG0271	Belongs to the BolA IbaG family
JFT56_RS15145	COG2873	o-acetylhomoserine
JFT56_RS15160	COG0697	spore germination
JFT56_RS15165	COG0840	transmembrane signaling receptor activity
JFT56_RS15170	COG1757	Na H antiporter
JFT56_RS15200	COG0814	amino acid
JFT56_RS15205	COG3397	chitin binding
JFT56_RS15210	COG2119	membrane
JFT56_RS15220	COG2050	protein possibly involved in aromatic compounds catabolism
JFT56_RS15235	COG0545	Peptidyl-prolyl cis-trans isomerase
JFT56_RS15275	COG1801	Protein of unknown function DUF72
JFT56_RS15285	COG0306	phosphate transporter
JFT56_RS15300	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
JFT56_RS15305	COG1966	Carbon starvation protein
JFT56_RS15315	COG1346	cytolysis
JFT56_RS15325	COG0583	DNA-binding transcription factor activity
JFT56_RS15335	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JFT56_RS15340	COG0765	amino acid transport
JFT56_RS15375	COG0484	heat shock protein binding
JFT56_RS15415	COG3273	potassium ion transport
JFT56_RS15415	COG0471	metal ion transport
JFT56_RS15420	COG2895	sulfate adenylyltransferase (ATP) activity
JFT56_RS15435	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
JFT56_RS15450	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JFT56_RS15455	COG0175	sulfate reduction
JFT56_RS15470	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JFT56_RS15475	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JFT56_RS15495	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JFT56_RS15495	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JFT56_RS15500	COG1560	Kdo2-lipid A biosynthetic process
JFT56_RS15515	COG3604	Transcriptional regulator
JFT56_RS15520	COG1376	ErfK ybiS ycfS ynhG family protein
JFT56_RS15535	COG0612	Peptidase, M16
JFT56_RS15540	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JFT56_RS15560	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JFT56_RS15565	COG5002	protein histidine kinase activity
JFT56_RS15565	COG5001	Diguanylate cyclase
JFT56_RS15565	COG3447	MASE1 domain protein
JFT56_RS15570	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JFT56_RS15585	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JFT56_RS15610	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JFT56_RS15615	COG3025	triphosphatase activity
JFT56_RS15620	COG1392	Phosphate transport regulator
JFT56_RS15625	COG0306	phosphate transporter
JFT56_RS15630	COG4991	sh3 domain protein
JFT56_RS15665	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JFT56_RS15670	COG4988	ABC transporter
JFT56_RS15685	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JFT56_RS15690	COG2166	iron-sulfur cluster assembly
JFT56_RS15715	COG0826	peptidase U32
JFT56_RS15720	COG0564	pseudouridine synthase activity
JFT56_RS15725	COG1522	sequence-specific DNA binding
JFT56_RS15730	COG1404	Belongs to the peptidase S8 family
JFT56_RS15735	COG0842	Transport permease protein
JFT56_RS15740	COG1131	(ABC) transporter
JFT56_RS15750	COG0163	prenyltransferase activity
JFT56_RS15755	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JFT56_RS15795	COG2211	Major facilitator Superfamily
JFT56_RS15810	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JFT56_RS15820	COG2200	EAL domain
JFT56_RS15840	COG1053	succinate dehydrogenase
JFT56_RS15885	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS15890	COG0604	alcohol dehydrogenase
JFT56_RS15900	COG2890	protein-(glutamine-N5) methyltransferase activity
JFT56_RS15925	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JFT56_RS15950	COG1187	pseudouridine synthase activity
JFT56_RS15960	COG3590	peptidase
JFT56_RS15980	COG4206	TonB-dependent receptor
JFT56_RS15995	COG4807	Protein conserved in bacteria
JFT56_RS16000	COG0281	malic enzyme
JFT56_RS16015	COG2199	diguanylate cyclase activity
JFT56_RS16025	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JFT56_RS16030	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JFT56_RS16045	COG4206	TonB-dependent receptor
JFT56_RS16065	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JFT56_RS16070	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
JFT56_RS16095	COG0534	Mate efflux family protein
JFT56_RS16105	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JFT56_RS16115	COG3706	GGDEF domain
JFT56_RS16120	COG1944	ATP diphosphatase activity
JFT56_RS16165	COG0477	Major facilitator Superfamily
JFT56_RS16170	COG3246	L-lysine catabolic process to acetate
JFT56_RS16175	COG2175	clavaminate synthase activity
JFT56_RS16190	COG4447	cellulose binding
JFT56_RS16225	COG0586	Pfam SNARE associated Golgi protein
JFT56_RS16230	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JFT56_RS16250	COG0509	glycine decarboxylation via glycine cleavage system
JFT56_RS16255	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JFT56_RS16260	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JFT56_RS16265	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JFT56_RS16275	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
JFT56_RS16285	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JFT56_RS16315	COG0583	DNA-binding transcription factor activity
JFT56_RS16320	COG2837	iron assimilation
JFT56_RS16325	COG0405	Gamma-glutamyltransferase
JFT56_RS16330	COG3842	ATPase activity
JFT56_RS16340	COG1840	ABC-type Fe3 transport system, periplasmic component
JFT56_RS16355	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JFT56_RS16370	COG0069	glutamate synthase activity
JFT56_RS16380	COG5265	(ABC) transporter
JFT56_RS16390	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JFT56_RS16405	COG0004	ammonium transporteR
JFT56_RS16420	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JFT56_RS16425	COG3850	Histidine kinase
JFT56_RS16430	COG2197	response regulator
JFT56_RS16450	COG0527	aspartate kinase activity
JFT56_RS16460	COG0745	RESPONSE REGULATOR receiver
JFT56_RS16510	COG1301	dicarboxylic acid transport
JFT56_RS16570	COG0187	DNA topoisomerase II activity
JFT56_RS16575	COG3150	esterase
JFT56_RS16580	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JFT56_RS16590	COG0494	nUDIX hydrolase
JFT56_RS16595	COG1538	Outer membrane efflux protein
JFT56_RS16615	COG1024	Enoyl-CoA hydratase
JFT56_RS16630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JFT56_RS16640	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JFT56_RS16650	COG3591	Belongs to the peptidase S1B family
JFT56_RS16650	COG4990	cell redox homeostasis
JFT56_RS16660	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JFT56_RS16680	COG0477	Major facilitator Superfamily
JFT56_RS16685	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JFT56_RS16690	COG0557	exoribonuclease II activity
JFT56_RS16695	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JFT56_RS16700	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JFT56_RS16705	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JFT56_RS16710	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JFT56_RS16720	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JFT56_RS16725	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JFT56_RS16730	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JFT56_RS16735	COG3547	Transposase (IS116 IS110 IS902 family)
JFT56_RS16760	COG5007	Belongs to the BolA IbaG family
JFT56_RS16770	COG2854	intermembrane phospholipid transfer
JFT56_RS16775	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JFT56_RS16780	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JFT56_RS16785	COG1127	ABC transporter
JFT56_RS16790	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JFT56_RS16790	COG0517	IMP dehydrogenase activity
JFT56_RS16795	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JFT56_RS16810	COG1137	ATPase activity
JFT56_RS16815	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JFT56_RS16825	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JFT56_RS16830	COG1660	Displays ATPase and GTPase activities
JFT56_RS16835	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JFT56_RS16840	COG2239	Acts as a magnesium transporter
JFT56_RS16850	COG2885	chlorophyll binding
JFT56_RS16875	COG5001	Diguanylate cyclase
JFT56_RS16875	COG3300	MHYT domain
JFT56_RS16890	COG1280	lysine exporter protein (LysE YggA)
JFT56_RS16945	COG1342	Belongs to the UPF0251 family
JFT56_RS16950	COG1119	ATPase activity
JFT56_RS16970	COG3550	peptidyl-serine autophosphorylation
JFT56_RS16975	COG1396	sequence-specific DNA binding
JFT56_RS17005	COG0534	Mate efflux family protein
JFT56_RS17010	COG0583	DNA-binding transcription factor activity
JFT56_RS17020	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS17035	COG1324	tolerance protein
JFT56_RS17040	COG4232	protein-disulfide reductase activity
JFT56_RS17045	COG4651	solute:proton antiporter activity
JFT56_RS17045	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JFT56_RS17050	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JFT56_RS17055	COG2017	converts alpha-aldose to the beta-anomer
JFT56_RS17075	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS17090	COG1388	LysM domain
JFT56_RS17090	COG0741	lytic transglycosylase activity
JFT56_RS17105	COG2814	Major facilitator Superfamily
JFT56_RS17125	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JFT56_RS17135	COG3590	peptidase
JFT56_RS17165	COG3301	Polysulphide reductase, NrfD
JFT56_RS17170	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS17190	COG0484	heat shock protein binding
JFT56_RS17195	COG1138	Cytochrome C-type biogenesis protein
JFT56_RS17205	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JFT56_RS17220	COG0628	permease
JFT56_RS17230	COG1879	ABC-type sugar transport system periplasmic component
JFT56_RS17235	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JFT56_RS17240	COG0210	DNA helicase
JFT56_RS17260	COG0433	COG0433 Predicted ATPase
JFT56_RS17265	COG2358	TRAP transporter, solute receptor (TAXI family
JFT56_RS17280	COG2186	Transcriptional regulator
JFT56_RS17295	COG3976	FMN-binding domain protein
JFT56_RS17295	COG1053	succinate dehydrogenase
JFT56_RS17315	COG3118	belongs to the thioredoxin family
JFT56_RS17320	COG0471	metal ion transport
JFT56_RS17345	COG0330	HflC and HflK could
JFT56_RS17350	COG0701	Predicted permease
JFT56_RS17355	COG0789	Transcriptional regulator
JFT56_RS17360	COG0138	bifunctional purine biosynthesis protein purh
JFT56_RS17365	COG0151	Belongs to the GarS family
JFT56_RS17380	COG0300	oxidoreductase activity
JFT56_RS17385	COG5001	Diguanylate cyclase
JFT56_RS17385	COG5002	protein histidine kinase activity
JFT56_RS17390	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JFT56_RS17400	COG1049	propionate catabolic process, 2-methylcitrate cycle
JFT56_RS17405	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JFT56_RS17410	COG3590	peptidase
JFT56_RS17415	COG1752	Esterase of the alpha-beta hydrolase superfamily
JFT56_RS17425	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JFT56_RS17430	COG0508	dehydrogenase complex catalyzes the overall conversion of
JFT56_RS17435	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JFT56_RS17440	COG2186	Transcriptional regulator
JFT56_RS17450	COG3023	N-Acetylmuramoyl-L-alanine amidase
JFT56_RS17460	COG4969	Belongs to the N-Me-Phe pilin family
JFT56_RS17465	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JFT56_RS17470	COG1459	type II secretion system
JFT56_RS17475	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JFT56_RS17480	COG0237	dephospho-CoA kinase activity
JFT56_RS17490	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JFT56_RS17495	COG0494	nUDIX hydrolase
JFT56_RS17515	COG3118	belongs to the thioredoxin family
JFT56_RS17520	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JFT56_RS17525	COG0583	DNA-binding transcription factor activity
JFT56_RS17540	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JFT56_RS17545	COG1053	succinate dehydrogenase
JFT56_RS17565	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JFT56_RS17570	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
JFT56_RS17575	COG0628	permease
JFT56_RS17600	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
JFT56_RS17615	COG1011	Hydrolase
JFT56_RS17620	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
JFT56_RS17630	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JFT56_RS17635	COG0019	diaminopimelate decarboxylase activity
JFT56_RS17655	COG0181	hydroxymethylbilane synthase activity
JFT56_RS17660	COG1587	Uroporphyrinogen-III synthase
JFT56_RS17665	COG2959	enzyme of heme biosynthesis
JFT56_RS17735	COG0210	DNA helicase
JFT56_RS17740	COG1309	transcriptional regulator
JFT56_RS17745	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS17750	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS17770	COG3214	Protein conserved in bacteria
JFT56_RS17780	COG0671	phosphoesterase, PA-phosphatase related
JFT56_RS17805	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JFT56_RS17810	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JFT56_RS17815	COG0129	dihydroxy-acid dehydratase activity
JFT56_RS17830	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JFT56_RS17835	COG0583	DNA-binding transcription factor activity
JFT56_RS17840	COG1253	flavin adenine dinucleotide binding
JFT56_RS17850	COG4251	negative regulation of phosphorylation
JFT56_RS17850	COG2203	Gaf domain
JFT56_RS17850	COG5001	Diguanylate cyclase
JFT56_RS17850	COG3706	GGDEF domain
JFT56_RS17855	COG1609	Transcriptional regulator
JFT56_RS17860	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JFT56_RS17880	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JFT56_RS17885	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JFT56_RS17910	COG2986	histidine ammonia-lyase
JFT56_RS17940	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JFT56_RS17950	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS17990	COG0454	-acetyltransferase
JFT56_RS17995	COG3135	benzoate transporter
JFT56_RS18000	COG1396	sequence-specific DNA binding
JFT56_RS18010	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JFT56_RS18015	COG0456	acetyltransferase
JFT56_RS18050	COG0348	domain, Protein
JFT56_RS18060	COG1217	gtp-binding protein TYPA
JFT56_RS18065	COG0174	glutamine synthetase
JFT56_RS18080	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JFT56_RS18090	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JFT56_RS18125	COG0564	pseudouridine synthase activity
JFT56_RS18130	COG5002	protein histidine kinase activity
JFT56_RS18145	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JFT56_RS18160	COG0314	molybdopterin synthase activity
JFT56_RS18165	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JFT56_RS18175	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JFT56_RS18185	COG0840	transmembrane signaling receptor activity
JFT56_RS18195	COG2258	MOSC domain
JFT56_RS18200	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JFT56_RS18220	COG3123	guanosine phosphorylase activity
JFT56_RS18225	COG1309	transcriptional regulator
JFT56_RS18230	COG1979	alcohol dehydrogenase
JFT56_RS18250	COG3852	Histidine kinase
JFT56_RS18255	COG2204	response regulator
JFT56_RS18270	COG3678	ATP-independent chaperone mediated protein folding
JFT56_RS18275	COG0745	RESPONSE REGULATOR receiver
JFT56_RS18280	COG2205	protein histidine kinase activity
JFT56_RS18285	COG3284	Transcriptional regulator
JFT56_RS18335	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JFT56_RS18335	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JFT56_RS18380	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JFT56_RS18410	COG0243	molybdopterin cofactor binding
JFT56_RS18410	COG3383	formate dehydrogenase (NAD+) activity
JFT56_RS18415	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS18430	COG3383	formate dehydrogenase (NAD+) activity
JFT56_RS18430	COG0243	molybdopterin cofactor binding
JFT56_RS18435	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS18445	COG4774	siderophore transport
JFT56_RS18445	COG1629	transport
JFT56_RS18470	COG0697	spore germination
JFT56_RS18475	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JFT56_RS18490	COG1506	peptidase
JFT56_RS18490	COG0823	Involved in the tonB-independent uptake of proteins
JFT56_RS18500	COG0612	Peptidase, M16
JFT56_RS18505	COG1473	amidohydrolase
JFT56_RS18555	COG3300	MHYT domain
JFT56_RS18555	COG5001	Diguanylate cyclase
JFT56_RS18610	COG0531	amino acid
JFT56_RS18615	COG1522	sequence-specific DNA binding
JFT56_RS18620	COG3301	Polysulphide reductase, NrfD
JFT56_RS18625	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS18645	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JFT56_RS18650	COG2267	carboxylic ester hydrolase activity
JFT56_RS18655	COG1441	menaquinone biosynthetic process
JFT56_RS18665	COG2203	Gaf domain
JFT56_RS18665	COG5001	Diguanylate cyclase
JFT56_RS18665	COG4251	negative regulation of phosphorylation
JFT56_RS18665	COG3706	GGDEF domain
JFT56_RS18670	COG2197	response regulator
JFT56_RS18675	COG2205	protein histidine kinase activity
JFT56_RS18675	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JFT56_RS18690	COG3188	usher protein
JFT56_RS18695	COG3121	Chaperone
JFT56_RS18720	COG2177	Part of the ABC transporter FtsEX involved in
JFT56_RS18725	COG2884	Cell division ATP-binding protein ftsE
JFT56_RS18730	COG0552	protein localization to endoplasmic reticulum
JFT56_RS18735	COG0742	ribosomal rna small subunit methyltransferase
JFT56_RS18745	COG4977	sequence-specific DNA binding
JFT56_RS18750	COG1335	isochorismatase
JFT56_RS18755	COG3005	denitrification pathway
JFT56_RS18775	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS18780	COG3719	Belongs to the RNase T2 family
JFT56_RS18810	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JFT56_RS18815	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JFT56_RS18820	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JFT56_RS18845	COG1612	heme a metabolic process
JFT56_RS18855	COG1999	signal sequence binding
JFT56_RS18860	COG0726	polysaccharide deacetylase
JFT56_RS18865	COG0534	Mate efflux family protein
JFT56_RS18870	COG4946	Tricorn protease homolog
JFT56_RS18870	COG0823	Involved in the tonB-independent uptake of proteins
JFT56_RS18870	COG1506	peptidase
JFT56_RS18880	COG1040	competence protein
JFT56_RS18925	COG1518	maintenance of DNA repeat elements
JFT56_RS18930	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
JFT56_RS18935	COG1368	sulfuric ester hydrolase activity
JFT56_RS18940	COG2183	response to ionizing radiation
JFT56_RS18945	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JFT56_RS18990	COG3064	Membrane
JFT56_RS19005	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JFT56_RS19025	COG0109	protoheme IX farnesyltransferase activity
JFT56_RS19040	COG3300	MHYT domain
JFT56_RS19040	COG5001	Diguanylate cyclase
JFT56_RS19045	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JFT56_RS19050	COG0739	heme binding
JFT56_RS19050	COG1196	nuclear chromosome segregation
JFT56_RS19050	COG0741	lytic transglycosylase activity
JFT56_RS19070	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JFT56_RS19075	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JFT56_RS19085	COG0625	glutathione transferase activity
JFT56_RS19110	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JFT56_RS19115	COG1280	lysine exporter protein (LysE YggA)
JFT56_RS19135	COG1730	sister chromatid segregation
JFT56_RS19140	COG1301	dicarboxylic acid transport
JFT56_RS19145	COG1289	transmembrane transporter activity
JFT56_RS19155	COG2226	methyltransferase
JFT56_RS19190	COG2827	Endonuclease containing a URI domain
JFT56_RS19195	COG1770	oligopeptidase
JFT56_RS19200	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JFT56_RS19210	COG1528	Iron-storage protein
JFT56_RS19215	COG0303	'Molybdopterin
JFT56_RS19220	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JFT56_RS19225	COG3042	response to heat
JFT56_RS19235	COG1580	Controls the rotational direction of flagella during chemotaxis
JFT56_RS19250	COG2095	MarC family integral membrane protein
JFT56_RS19275	COG0668	transmembrane transport
JFT56_RS19300	COG4232	protein-disulfide reductase activity
JFT56_RS19310	COG1028	Short-chain dehydrogenase reductase Sdr
JFT56_RS19345	COG0425	Belongs to the sulfur carrier protein TusA family
JFT56_RS19350	COG2391	methyltransferase activity
JFT56_RS19355	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JFT56_RS19370	COG1921	L-seryl-tRNASec selenium transferase activity
JFT56_RS19380	COG2864	formate dehydrogenase
JFT56_RS19385	COG0437	4 iron, 4 sulfur cluster binding
JFT56_RS19395	COG2986	histidine ammonia-lyase
JFT56_RS19405	COG2188	Transcriptional regulator
JFT56_RS19425	COG2356	endonuclease I
JFT56_RS19490	COG1022	Amp-dependent synthetase and ligase
JFT56_RS19500	COG1131	(ABC) transporter
JFT56_RS19505	COG2188	Transcriptional regulator
JFT56_RS19515	COG4555	ABC transporter
JFT56_RS19520	COG1668	transmembrane transport
JFT56_RS19540	COG0521	Mo-molybdopterin cofactor biosynthetic process
JFT56_RS19545	COG3550	peptidyl-serine autophosphorylation
JFT56_RS19555	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JFT56_RS19575	COG1609	Transcriptional regulator
JFT56_RS19580	COG0791	NLP P60 protein
JFT56_RS19585	COG2223	nitrite transmembrane transporter activity
JFT56_RS19590	COG3279	Response regulator of the LytR AlgR family
JFT56_RS19595	COG3275	phosphorelay sensor kinase activity
JFT56_RS19605	COG2205	protein histidine kinase activity
JFT56_RS19610	COG0745	RESPONSE REGULATOR receiver
JFT56_RS19615	COG0569	domain protein
JFT56_RS19620	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JFT56_RS19635	COG2081	HI0933 family
JFT56_RS19650	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JFT56_RS19655	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JFT56_RS19660	COG4942	peptidase
JFT56_RS19665	COG0793	Belongs to the peptidase S41A family
JFT56_RS19670	COG2861	carbohydrate metabolic process
JFT56_RS19675	COG1959	2 iron, 2 sulfur cluster binding
JFT56_RS19710	COG0348	domain, Protein
JFT56_RS19730	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JFT56_RS19735	COG1349	DNA-binding transcription factor activity
JFT56_RS19740	COG4774	siderophore transport
JFT56_RS19750	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JFT56_RS19760	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JFT56_RS19770	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JFT56_RS19795	COG1475	DNA binding
JFT56_RS19800	COG1192	Involved in chromosome partitioning
JFT56_RS19815	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JFT56_RS19820	COG3104	oligopeptide transport
JFT56_RS19840	COG0594	ribonuclease P activity