locus-tag class description DY_2185a PF07411 Domain of unknown function (DUF1508) SDY_0001 PF08254 Threonine leader peptide SDY_0002 PF03447 Homoserine dehydrogenase, NAD binding domain SDY_0002 PF01842 ACT domain SDY_0002 PF13840 ACT domain SDY_0002 PF00696 Amino acid kinase family SDY_0002 PF00742 Homoserine dehydrogenase SDY_0003 PF00288 GHMP kinases N terminal domain SDY_0003 PF08544 GHMP kinases C terminal SDY_0004 PF14821 Threonine synthase N terminus SDY_0004 PF00291 Pyridoxal-phosphate dependent enzyme SDY_0005 PF10697 Protein of unknown function (DUF2502) SDY_0006 PF03883 Peroxide stress protein YaaA SDY_0008 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDY_0009 PF00994 Probable molybdopterin binding domain SDY_0010 PF01184 GPR1/FUN34/yaaH family SDY_0011 PF13099 Domain of unknown function (DUF3944) SDY_0011 PF03981 Ubiquinol-cytochrome C chaperone SDY_0012 PF10807 Protein of unknown function (DUF2541) SDY_0013 PF00012 Hsp70 protein SDY_0014 PF01556 DnaJ C terminal domain SDY_0014 PF00684 DnaJ central domain SDY_0014 PF00226 DnaJ domain SDY_0015 PF01848 Hok/gef family SDY_0018 PF06965 Na+/H+ antiporter 1 SDY_0019 PF03466 LysR substrate binding domain SDY_0019 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_0022 PF03400 IS1 transposase SDY_0023 PF03400 IS1 transposase SDY_0024 PF12759 InsA C-terminal domain SDY_0024 PF03811 InsA N-terminal domain SDY_0025 PF00330 Aconitase family (aconitate hydratase) SDY_0025 PF06434 Aconitate hydratase 2 N-terminus SDY_0025 PF11791 Aconitate B N-terminal domain SDY_0026 PF06062 Uncharacterised protein family (UPF0231) SDY_0027 PF02675 S-adenosylmethionine decarboxylase SDY_0028 PF17284 Spermidine synthase tetramerisation domain SDY_0030 PF07732 Multicopper oxidase SDY_0030 PF07731 Multicopper oxidase SDY_0030 PF00394 Multicopper oxidase SDY_0031 PF03811 InsA N-terminal domain SDY_0031 PF12759 InsA C-terminal domain SDY_0032 PF03400 IS1 transposase SDY_0034 PF00156 Phosphoribosyl transferase domain SDY_0035 PF00484 Carbonic anhydrase SDY_0036 PF00005 ABC transporter SDY_0037 PF01061 ABC-2 type transporter SDY_0038 PF03610 PTS system fructose IIA component SDY_0041 PF02261 Aspartate decarboxylase SDY_0042 PF04754 Putative transposase, YhgA-like SDY_0043 PF12759 InsA C-terminal domain SDY_0043 PF03811 InsA N-terminal domain SDY_0044 PF03400 IS1 transposase SDY_0045 PF01649 Ribosomal protein S20 SDY_0046 PF10837 Protein of unknown function (DUF2575) SDY_0047 PF06574 FAD synthetase SDY_0047 PF01687 Riboflavin kinase SDY_0048 PF06827 Zinc finger found in FPG and IleRS SDY_0048 PF00133 tRNA synthetases class I (I, L, M and V) SDY_0048 PF08264 Anticodon-binding domain of tRNA SDY_0049 PF01252 Signal peptidase (SPase) II SDY_0050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDY_0051 PF02401 LytB protein SDY_0052 PF01156 Inosine-uridine preferring nucleoside hydrolase SDY_0053 PF05173 Dihydrodipicolinate reductase, C-terminus SDY_0053 PF01113 Dihydrodipicolinate reductase, N-terminus SDY_0054 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SDY_0054 PF00117 Glutamine amidotransferase class-I SDY_0055 PF02142 MGS-like domain SDY_0055 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SDY_0055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDY_0057 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_0058 PF00378 Enoyl-CoA hydratase/isomerase SDY_0059 PF13193 AMP-binding enzyme C-terminal domain SDY_0059 PF00501 AMP-binding enzyme SDY_0060 PF02515 CoA-transferase family III SDY_0061 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SDY_0061 PF02770 Acyl-CoA dehydrogenase, middle domain SDY_0061 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SDY_0062 PF02028 BCCT, betaine/carnitine/choline family transporter SDY_0063 PF01012 Electron transfer flavoprotein domain SDY_0064 PF00766 Electron transfer flavoprotein FAD-binding domain SDY_0064 PF01012 Electron transfer flavoprotein domain SDY_0069 PF02525 Flavodoxin-like fold SDY_0070 PF02254 TrkA-N domain SDY_0070 PF00999 Sodium/hydrogen exchanger family SDY_0071 PF00186 Dihydrofolate reductase SDY_0074 PF00149 Calcineurin-like phosphoesterase SDY_0075 PF04379 ApaG domain SDY_0076 PF00398 Ribosomal RNA adenine dimethylase SDY_0077 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SDY_0078 PF09312 SurA N-terminal domain SDY_0078 PF00639 PPIC-type PPIASE domain SDY_0079 PF03968 OstA-like protein SDY_0079 PF04453 LPS transport system D SDY_0080 PF00226 DnaJ domain SDY_0080 PF05099 Tellurite resistance protein TerB SDY_0082 PF00849 RNA pseudouridylate synthase SDY_0083 PF18337 RapA N-terminal Tudor like domain SDY_0083 PF18339 RapA N-terminal Tudor like domain 1 SDY_0083 PF00176 SNF2 family N-terminal domain SDY_0083 PF12137 RNA polymerase recycling family C-terminal SDY_0083 PF00271 Helicase conserved C-terminal domain SDY_0084 PF03400 IS1 transposase SDY_0085 PF03811 InsA N-terminal domain SDY_0085 PF12759 InsA C-terminal domain SDY_0086 PF03400 IS1 transposase SDY_0088 PF00596 Class II Aldolase and Adducin N-terminal domain SDY_0089 PF02610 L-arabinose isomerase SDY_0089 PF11762 L-arabinose isomerase C-terminal domain SDY_0090 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDY_0092 PF09335 SNARE associated Golgi protein SDY_0093 PF00005 ABC transporter SDY_0094 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0096 PF03811 InsA N-terminal domain SDY_0096 PF12759 InsA C-terminal domain SDY_0097 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_0097 PF12793 Sugar transport-related sRNA regulator N-term SDY_0098 PF00694 Aconitase C-terminal domain SDY_0099 PF00330 Aconitase family (aconitate hydratase) SDY_0100 PF00180 Isocitrate/isopropylmalate dehydrogenase SDY_0101 PF08502 LeuA allosteric (dimerisation) domain SDY_0101 PF00682 HMGL-like SDY_0102 PF08054 Leucine operon leader peptide SDY_0104 PF03466 LysR substrate binding domain SDY_0104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_0105 PF03400 IS1 transposase SDY_0106 PF03811 InsA N-terminal domain SDY_0106 PF12759 InsA C-terminal domain SDY_0107 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_0107 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_0107 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_0108 PF10369 Small subunit of acetolactate synthase SDY_0110 PF00356 Bacterial regulatory proteins, lacI family SDY_0110 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_0111 PF02381 MraZ protein, putative antitoxin-like SDY_0112 PF01795 MraW methylase family SDY_0113 PF04999 Cell division protein FtsL SDY_0114 PF00905 Penicillin binding protein transpeptidase domain SDY_0114 PF03717 Penicillin-binding Protein dimerisation domain SDY_0115 PF08245 Mur ligase middle domain SDY_0115 PF01225 Mur ligase family, catalytic domain SDY_0115 PF02875 Mur ligase family, glutamate ligase domain SDY_0116 PF08245 Mur ligase middle domain SDY_0116 PF02875 Mur ligase family, glutamate ligase domain SDY_0116 PF01225 Mur ligase family, catalytic domain SDY_0117 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SDY_0117 PF00953 Glycosyl transferase family 4 SDY_0118 PF08245 Mur ligase middle domain SDY_0118 PF02875 Mur ligase family, glutamate ligase domain SDY_0119 PF01098 Cell cycle protein SDY_0120 PF03033 Glycosyltransferase family 28 N-terminal domain SDY_0120 PF04101 Glycosyltransferase family 28 C-terminal domain SDY_0121 PF08245 Mur ligase middle domain SDY_0121 PF02875 Mur ligase family, glutamate ligase domain SDY_0121 PF01225 Mur ligase family, catalytic domain SDY_0122 PF07478 D-ala D-ala ligase C-terminus SDY_0122 PF01820 D-ala D-ala ligase N-terminus SDY_0123 PF08478 POTRA domain, FtsQ-type SDY_0123 PF03799 Cell division protein FtsQ SDY_0124 PF02491 SHS2 domain inserted in FTSA SDY_0125 PF12327 FtsZ family, C-terminal domain SDY_0125 PF00091 Tubulin/FtsZ family, GTPase domain SDY_0126 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SDY_0127 PF06558 Secretion monitor precursor protein (SecM) SDY_0128 PF01043 SecA preprotein cross-linking domain SDY_0128 PF02810 SEC-C motif SDY_0128 PF07517 SecA DEAD-like domain SDY_0128 PF07516 SecA Wing and Scaffold domain SDY_0129 PF00293 NUDIX domain SDY_0131 PF03884 DNA gyrase inhibitor YacG SDY_0132 PF07072 Cell division protein SDY_0133 PF01121 Dephospho-CoA kinase SDY_0134 PF00478 IMP dehydrogenase / GMP reductase domain SDY_0138 PF07963 Prokaryotic N-terminal methylation motif SDY_0139 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SDY_0139 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SDY_0140 PF01510 N-acetylmuramoyl-L-alanine amidase SDY_0141 PF17113 Regulatory signalling modulator protein AmpE SDY_0142 PF00324 Amino acid permease SDY_0143 PF07729 FCD domain SDY_0143 PF00392 Bacterial regulatory proteins, gntR family SDY_0144 PF00456 Transketolase, thiamine diphosphate binding domain SDY_0144 PF17831 Pyruvate dehydrogenase E1 component middle domain SDY_0145 PF02817 e3 binding domain SDY_0145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SDY_0145 PF00364 Biotin-requiring enzyme SDY_0146 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDY_0146 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_0149 PF03400 IS1 transposase SDY_0150 PF12759 InsA C-terminal domain SDY_0150 PF03811 InsA N-terminal domain SDY_0151 PF13953 PapC C-terminal domain SDY_0151 PF13954 PapC N-terminal domain SDY_0151 PF00577 Outer membrane usher protein SDY_0152 PF03400 IS1 transposase SDY_0154 PF02548 Ketopantoate hydroxymethyltransferase SDY_0155 PF02569 Pantoate-beta-alanine ligase SDY_0156 PF03400 IS1 transposase SDY_0157 PF03400 IS1 transposase SDY_0158 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SDY_0159 PF12626 Polymerase A arginine-rich C-terminus SDY_0159 PF01743 Poly A polymerase head domain SDY_0159 PF12627 Probable RNA and SrmB- binding site of polymerase A SDY_0160 PF00749 tRNA synthetases class I (E and Q), catalytic domain SDY_0161 PF01258 Prokaryotic dksA/traR C4-type zinc finger SDY_0162 PF03749 Sugar fermentation stimulation protein RE domain SDY_0162 PF17746 SfsA N-terminal OB domain SDY_0163 PF02834 LigT like Phosphoesterase SDY_0165 PF14814 Bifunctional transglycosylase second domain SDY_0165 PF00905 Penicillin binding protein transpeptidase domain SDY_0165 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SDY_0165 PF00912 Transglycosylase SDY_0166 PF00593 TonB dependent receptor SDY_0166 PF07715 TonB-dependent Receptor Plug Domain SDY_0167 PF00005 ABC transporter SDY_0168 PF01497 Periplasmic binding protein SDY_0169 PF01032 FecCD transport family SDY_0170 PF00202 Aminotransferase class-III SDY_0171 PF00654 Voltage gated chloride channel SDY_0172 PF01521 Iron-sulphur cluster biosynthesis SDY_0173 PF03458 UPF0126 domain SDY_0174 PF01497 Periplasmic binding protein SDY_0175 PF01048 Phosphorylase superfamily SDY_0177 PF03400 IS1 transposase SDY_0178 PF00595 PDZ domain SDY_0181 PF11944 Protein of unknown function (DUF3461) SDY_0182 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_0182 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SDY_0182 PF14602 Hexapeptide repeat of succinyl-transferase SDY_0183 PF01966 HD domain SDY_0183 PF08335 GlnD PII-uridylyltransferase SDY_0183 PF01909 Nucleotidyltransferase domain SDY_0183 PF01842 ACT domain SDY_0184 PF00557 Metallopeptidase family M24 SDY_0185 PF00318 Ribosomal protein S2 SDY_0186 PF00889 Elongation factor TS SDY_0187 PF00696 Amino acid kinase family SDY_0188 PF01765 Ribosome recycling factor SDY_0189 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SDY_0189 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SDY_0189 PF13288 DXP reductoisomerase C-terminal domain SDY_0190 PF01255 Putative undecaprenyl diphosphate synthase SDY_0192 PF02163 Peptidase family M50 SDY_0192 PF17820 PDZ domain SDY_0193 PF07244 Surface antigen variable number repeat SDY_0193 PF01103 Surface antigen SDY_0194 PF03938 Outer membrane protein (OmpH-like) SDY_0195 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_0195 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SDY_0196 PF07977 FabA-like domain SDY_0197 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SDY_0197 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_0198 PF02684 Lipid-A-disaccharide synthetase SDY_0199 PF01351 Ribonuclease HII SDY_0200 PF07733 Bacterial DNA polymerase III alpha NTPase domain SDY_0200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SDY_0200 PF02811 PHP domain SDY_0200 PF14579 Helix-hairpin-helix motif SDY_0200 PF01336 OB-fold nucleic acid binding domain SDY_0201 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SDY_0202 PF03811 InsA N-terminal domain SDY_0202 PF12759 InsA C-terminal domain SDY_0203 PF03400 IS1 transposase SDY_0205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDY_0206 PF09179 TilS substrate binding domain SDY_0206 PF01171 PP-loop family SDY_0206 PF11734 TilS substrate C-terminal domain SDY_0207 PF07073 Modulator of Rho-dependent transcription termination (ROF) SDY_0208 PF06786 Uncharacterised protein family (UPF0253) SDY_0209 PF07152 YaeQ protein SDY_0210 PF00472 RF-1 domain SDY_0211 PF17185 NlpE C-terminal OB domain SDY_0211 PF04170 NlpE N-terminal domain SDY_0212 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SDY_0213 PF03129 Anticodon binding domain SDY_0213 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDY_0213 PF04073 Aminoacyl-tRNA editing domain SDY_0214 PF01980 tRNA-methyltransferase O SDY_0214 PF18389 TrmO C-terminal domain SDY_0215 PF16358 RcsF lipoprotein SDY_0216 PF03180 NLPA lipoprotein SDY_0217 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0218 PF00005 ABC transporter SDY_0218 PF09383 NIL domain SDY_0226 PF00248 Aldo/keto reductase family SDY_0227 PF03466 LysR substrate binding domain SDY_0227 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_0228 PF03372 Endonuclease/Exonuclease/phosphatase family SDY_0230 PF01464 Transglycosylase SLT domain SDY_0230 PF01476 LysM domain SDY_0231 PF00753 Metallo-beta-lactamase superfamily SDY_0231 PF16123 Hydroxyacylglutathione hydrolase C-terminus SDY_0232 PF08241 Methyltransferase domain SDY_0233 PF00075 RNase H SDY_0234 PF00929 Exonuclease SDY_0236 PF03400 IS1 transposase SDY_0237 PF12759 InsA C-terminal domain SDY_0237 PF03811 InsA N-terminal domain SDY_0242 PF03400 IS1 transposase SDY_0245 PF00795 Carbon-nitrogen hydrolase SDY_0248 PF13580 SIS domain SDY_0249 PF13230 Glutamine amidotransferases class-II SDY_0250 PF03734 L,D-transpeptidase catalytic domain SDY_0251 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SDY_0252 PF04221 RelB antitoxin SDY_0253 PF00877 NlpC/P60 family SDY_0255 PF03400 IS1 transposase SDY_0256 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SDY_0256 PF02753 Pili assembly chaperone PapD, C-terminal domain SDY_0257 PF12759 InsA C-terminal domain SDY_0257 PF03811 InsA N-terminal domain SDY_0258 PF03400 IS1 transposase SDY_0260 PF03400 IS1 transposase SDY_0261 PF03400 IS1 transposase SDY_0266 PF13632 Glycosyl transferase family group 2 SDY_0266 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SDY_0267 PF03400 IS1 transposase SDY_0268 PF00549 CoA-ligase SDY_0268 PF02629 CoA binding domain SDY_0269 PF06545 Protein of unknown function (DUF1116) SDY_0270 PF11392 Protein of unknown function (DUF2877) SDY_0272 PF03400 IS1 transposase SDY_0273 PF03811 InsA N-terminal domain SDY_0273 PF12759 InsA C-terminal domain SDY_0274 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SDY_0274 PF02222 ATP-grasp domain SDY_0275 PF00731 AIR carboxylase SDY_0276 PF12850 Calcineurin-like phosphoesterase superfamily domain SDY_0277 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SDY_0278 PF01406 tRNA synthetases class I (C) catalytic domain SDY_0278 PF09190 DALR domain SDY_0281 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SDY_0281 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SDY_0282 PF03811 InsA N-terminal domain SDY_0282 PF12759 InsA C-terminal domain SDY_0283 PF13333 Integrase core domain SDY_0283 PF00665 Integrase core domain SDY_0283 PF13276 HTH-like domain SDY_0284 PF01527 Transposase SDY_0286 PF06508 Queuosine biosynthesis protein QueC SDY_0291 PF13145 PPIC-type PPIASE domain SDY_0292 PF00216 Bacterial DNA-binding protein SDY_0293 PF02190 ATP-dependent protease La (LON) substrate-binding domain SDY_0293 PF00004 ATPase family associated with various cellular activities (AAA) SDY_0293 PF05362 Lon protease (S16) C-terminal proteolytic domain SDY_0294 PF06689 ClpX C4-type zinc finger SDY_0294 PF10431 C-terminal, D2-small domain, of ClpB protein SDY_0294 PF07724 AAA domain (Cdc48 subfamily) SDY_0295 PF00574 Clp protease SDY_0296 PF05697 Bacterial trigger factor protein (TF) SDY_0296 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDY_0296 PF05698 Bacterial trigger factor protein (TF) C-terminus SDY_0298 PF01722 BolA-like protein SDY_0299 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SDY_0299 PF03923 Uncharacterized lipoprotein SDY_0300 PF07690 Major Facilitator Superfamily SDY_0301 PF03400 IS1 transposase SDY_0303 PF07690 Major Facilitator Superfamily SDY_0304 PF04461 Protein of unknown function (DUF520) SDY_0305 PF02558 Ketopantoate reductase PanE/ApbA SDY_0305 PF08546 Ketopantoate reductase PanE/ApbA C terminal SDY_0306 PF01965 DJ-1/PfpI family SDY_0307 PF02568 Thiamine biosynthesis protein (ThiI) SDY_0307 PF02926 THUMP domain SDY_0308 PF02609 Exonuclease VII small subunit SDY_0309 PF00348 Polyprenyl synthetase SDY_0310 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SDY_0310 PF02779 Transketolase, pyrimidine binding domain SDY_0310 PF02780 Transketolase, C-terminal domain SDY_0311 PF00248 Aldo/keto reductase family SDY_0312 PF03400 IS1 transposase SDY_0314 PF03400 IS1 transposase SDY_0316 PF04608 Phosphatidylglycerophosphatase A SDY_0317 PF02769 AIR synthase related protein, C-terminal domain SDY_0317 PF00586 AIR synthase related protein, N-terminal domain SDY_0318 PF01029 NusB family SDY_0319 PF00885 6,7-dimethyl-8-ribityllumazine synthase SDY_0320 PF01872 RibD C-terminal domain SDY_0320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SDY_0321 PF03477 ATP cone domain SDY_0322 PF11622 Protein of unknown function (DUF3251) SDY_0323 PF03502 Nucleoside-specific channel-forming protein, Tsx SDY_0324 PF01844 HNH endonuclease SDY_0325 PF07549 SecD/SecF GG Motif SDY_0325 PF02355 Protein export membrane protein SDY_0326 PF02355 Protein export membrane protein SDY_0326 PF13721 SecD export protein N-terminal TM region SDY_0326 PF07549 SecD/SecF GG Motif SDY_0327 PF02699 Preprotein translocase subunit SDY_0328 PF01702 Queuine tRNA-ribosyltransferase SDY_0329 PF02547 Queuosine biosynthesis protein SDY_0333 PF03400 IS1 transposase SDY_0334 PF02903 Alpha amylase, N-terminal ig-like domain SDY_0334 PF00128 Alpha amylase, catalytic domain SDY_0335 PF00324 Amino acid permease SDY_0336 PF05525 Branched-chain amino acid transport protein SDY_0338 PF00072 Response regulator receiver domain SDY_0338 PF00486 Transcriptional regulatory protein, C terminal SDY_0340 PF13006 Insertion element 4 transposase N-terminal SDY_0340 PF01609 Transposase DDE domain SDY_0341 PF13476 AAA domain SDY_0343 PF03400 IS1 transposase SDY_0344 PF04381 Putative exonuclease, RdgC SDY_0345 PF00480 ROK family SDY_0347 PF03400 IS1 transposase SDY_0349 PF01527 Transposase SDY_0350 PF13276 HTH-like domain SDY_0350 PF00665 Integrase core domain SDY_0351 PF03400 IS1 transposase SDY_0352 PF06865 Pyrimidine/purine nucleoside phosphorylase SDY_0353 PF07302 AroM protein SDY_0354 PF16362 YaiA protein SDY_0355 PF01202 Shikimate kinase SDY_0356 PF14748 Pyrroline-5-carboxylate reductase dimerisation SDY_0356 PF03807 NADP oxidoreductase coenzyme F420-dependent SDY_0357 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SDY_0358 PF05230 MASE2 domain SDY_0358 PF00990 Diguanylate cyclase, GGDEF domain SDY_0359 PF13276 HTH-like domain SDY_0359 PF00665 Integrase core domain SDY_0359 PF13333 Integrase core domain SDY_0360 PF07769 psiF repeat SDY_0362 PF03400 IS1 transposase SDY_0363 PF10796 Sigma-S stabilisation anti-adaptor protein SDY_0364 PF03400 IS1 transposase SDY_0365 PF01820 D-ala D-ala ligase N-terminus SDY_0365 PF07478 D-ala D-ala ligase C-terminus SDY_0366 PF10953 Protein of unknown function (DUF2754) SDY_0367 PF10954 Protein of unknown function (DUF2755) SDY_0368 PF07759 Protein of unknown function (DUF1615) SDY_0369 PF05992 SbmA/BacA-like family SDY_0370 PF00144 Beta-lactamase SDY_0371 PF15977 Winged helix-turn-helix DNA binding SDY_0372 PF03400 IS1 transposase SDY_0373 PF15977 Winged helix-turn-helix DNA binding SDY_0374 PF03400 IS1 transposase SDY_0375 PF12759 InsA C-terminal domain SDY_0375 PF03811 InsA N-terminal domain SDY_0376 PF01306 LacY proton/sugar symporter SDY_0377 PF03400 IS1 transposase SDY_0379 PF00356 Bacterial regulatory proteins, lacI family SDY_0380 PF00665 Integrase core domain SDY_0381 PF01527 Transposase SDY_0382 PF13333 Integrase core domain SDY_0382 PF00665 Integrase core domain SDY_0382 PF13276 HTH-like domain SDY_0384 PF13404 AsnC-type helix-turn-helix domain SDY_0384 PF01037 Lrp/AsnC ligand binding domain SDY_0385 PF00005 ABC transporter SDY_0385 PF00664 ABC transporter transmembrane region SDY_0386 PF00005 ABC transporter SDY_0386 PF00664 ABC transporter transmembrane region SDY_0387 PF00543 Nitrogen regulatory protein P-II SDY_0388 PF00909 Ammonium Transporter Family SDY_0391 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SDY_0392 PF07237 Protein of unknown function (DUF1428) SDY_0393 PF12792 CSS motif domain associated with EAL SDY_0393 PF00563 EAL domain SDY_0394 PF12759 InsA C-terminal domain SDY_0394 PF03811 InsA N-terminal domain SDY_0395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_0395 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_0395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_0396 PF09339 IclR helix-turn-helix domain SDY_0396 PF01614 Bacterial transcriptional regulator SDY_0397 PF04115 Ureidoglycolate lyase SDY_0398 PF03466 LysR substrate binding domain SDY_0398 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_0401 PF03811 InsA N-terminal domain SDY_0401 PF12759 InsA C-terminal domain SDY_0402 PF03400 IS1 transposase SDY_0404 PF13472 GDSL-like Lipase/Acylhydrolase family SDY_0405 PF00005 ABC transporter SDY_0406 PF00106 short chain dehydrogenase SDY_0407 PF00085 Thioredoxin SDY_0408 PF03649 Uncharacterised protein family (UPF0014) SDY_0409 PF00005 ABC transporter SDY_0410 PF16200 C-terminal region of band_7 SDY_0410 PF01145 SPFH domain / Band 7 family SDY_0411 PF01957 NfeD-like C-terminal, partner-binding SDY_0414 PF03400 IS1 transposase SDY_0415 PF13411 MerR HTH family regulatory protein SDY_0416 PF00529 HlyD membrane-fusion protein of T1SS SDY_0417 PF03412 Peptidase C39 family SDY_0417 PF00005 ABC transporter SDY_0417 PF00664 ABC transporter transmembrane region SDY_0427 PF03400 IS1 transposase SDY_0430 PF03811 InsA N-terminal domain SDY_0430 PF12759 InsA C-terminal domain SDY_0431 PF03400 IS1 transposase SDY_0432 PF13520 Amino acid permease SDY_0434 PF00403 Heavy-metal-associated domain SDY_0435 PF01381 Helix-turn-helix SDY_0436 PF01963 TraB family SDY_0437 PF04073 Aminoacyl-tRNA editing domain SDY_0438 PF02872 5'-nucleotidase, C-terminal domain SDY_0438 PF00149 Calcineurin-like phosphoesterase SDY_0440 PF01609 Transposase DDE domain SDY_0440 PF13006 Insertion element 4 transposase N-terminal SDY_0441 PF00999 Sodium/hydrogen exchanger family SDY_0441 PF02254 TrkA-N domain SDY_0442 PF00294 pfkB family carbohydrate kinase SDY_0444 PF00762 Ferrochelatase SDY_0445 PF05191 Adenylate kinase, active site lid SDY_0446 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_0446 PF00183 Hsp90 protein SDY_0447 PF02132 RecR protein SDY_0447 PF13662 Toprim domain SDY_0448 PF02575 YbaB/EbfC DNA-binding family SDY_0449 PF12170 DNA polymerase III tau subunit V interacting with alpha SDY_0449 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SDY_0449 PF12169 DNA polymerase III subunits gamma and tau domain III SDY_0450 PF00156 Phosphoribosyl transferase domain SDY_0451 PF04304 Protein of unknown function (DUF454) SDY_0452 PF07445 Primosomal replication protein priC SDY_0453 PF10689 Protein of unknown function (DUF2496) SDY_0454 PF00924 Mechanosensitive ion channel SDY_0454 PF12794 Mechanosensitive ion channel inner membrane domain 1 SDY_0454 PF12795 Mechanosensitive ion channel porin domain SDY_0455 PF00440 Bacterial regulatory proteins, tetR family SDY_0455 PF08361 MAATS-type transcriptional repressor, C-terminal region SDY_0456 PF00529 HlyD membrane-fusion protein of T1SS SDY_0456 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_0457 PF00873 AcrB/AcrD/AcrF family SDY_0458 PF10757 Biofilm formation regulator YbaJ SDY_0459 PF05321 Haemolysin expression modulating protein SDY_0460 PF12464 Maltose acetyltransferase SDY_0460 PF14602 Hexapeptide repeat of succinyl-transferase SDY_0461 PF10777 Inner membrane protein YlaC SDY_0462 PF12792 CSS motif domain associated with EAL SDY_0462 PF00563 EAL domain SDY_0463 PF01527 Transposase SDY_0464 PF13276 HTH-like domain SDY_0464 PF00665 Integrase core domain SDY_0465 PF03400 IS1 transposase SDY_0466 PF12759 InsA C-terminal domain SDY_0466 PF03811 InsA N-terminal domain SDY_0467 PF01527 Transposase SDY_0470 PF03400 IS1 transposase SDY_0473 PF00171 Aldehyde dehydrogenase family SDY_0474 PF01472 PUA domain SDY_0474 PF00696 Amino acid kinase family SDY_0475 PF03811 InsA N-terminal domain SDY_0475 PF12759 InsA C-terminal domain SDY_0476 PF03400 IS1 transposase SDY_0477 PF07417 Sigma factor-binding transcriptional regulator Crl SDY_0478 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SDY_0479 PF00156 Phosphoribosyl transferase domain SDY_0480 PF01546 Peptidase family M20/M25/M40 SDY_0480 PF07687 Peptidase dimerisation domain SDY_0481 PF00472 RF-1 domain SDY_0483 PF11798 IMS family HHH motif SDY_0483 PF00817 impB/mucB/samB family SDY_0483 PF11799 impB/mucB/samB family C-terminal domain SDY_0484 PF13677 Membrane MotB of proton-channel complex MotA/MotB SDY_0484 PF00691 OmpA family SDY_0485 PF01618 MotA/TolQ/ExbB proton channel family SDY_0486 PF03400 IS1 transposase SDY_0487 PF03811 InsA N-terminal domain SDY_0487 PF12759 InsA C-terminal domain SDY_0488 PF00873 AcrB/AcrD/AcrF family SDY_0489 PF00324 Amino acid permease SDY_0490 PF00924 Mechanosensitive ion channel SDY_0491 PF00881 Nitroreductase family SDY_0492 PF04237 YjbR SDY_0493 PF06643 Protein of unknown function (DUF1158) SDY_0494 PF04107 Glutamate-cysteine ligase family 2(GCS2) SDY_0495 PF00665 Integrase core domain SDY_0495 PF13276 HTH-like domain SDY_0495a PF01848 Hok/gef family SDY_0496 PF01527 Transposase SDY_0497 PF03797 Autotransporter beta-domain SDY_0498 PF03797 Autotransporter beta-domain SDY_0498 PF03212 Pertactin SDY_0499 PF03811 InsA N-terminal domain SDY_0499 PF12759 InsA C-terminal domain SDY_0500 PF03400 IS1 transposase SDY_0501 PF00490 Delta-aminolevulinic acid dehydratase SDY_0502 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SDY_0503 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0504 PF00005 ABC transporter SDY_0505 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SDY_0506 PF00072 Response regulator receiver domain SDY_0506 PF00196 Bacterial regulatory proteins, luxR family SDY_0510 PF01527 Transposase SDY_0510a PF01848 Hok/gef family SDY_0511 PF01648 4'-phosphopantetheinyl transferase superfamily SDY_0511 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SDY_0512 PF00593 TonB dependent receptor SDY_0512 PF07715 TonB-dependent Receptor Plug Domain SDY_0513 PF11806 Domain of unknown function (DUF3327) SDY_0513 PF00756 Putative esterase SDY_0514 PF03621 MbtH-like protein SDY_0515 PF00501 AMP-binding enzyme SDY_0515 PF00975 Thioesterase domain SDY_0515 PF00550 Phosphopantetheine attachment site SDY_0515 PF00668 Condensation domain SDY_0516 PF03400 IS1 transposase SDY_0517 PF12759 InsA C-terminal domain SDY_0517 PF03811 InsA N-terminal domain SDY_0518 PF02706 Chain length determinant protein SDY_0519 PF00005 ABC transporter SDY_0520 PF01032 FecCD transport family SDY_0521 PF01032 FecCD transport family SDY_0522 PF05977 Transmembrane secretion effector SDY_0523 PF01497 Periplasmic binding protein SDY_0524 PF00425 chorismate binding enzyme SDY_0525 PF00501 AMP-binding enzyme SDY_0525 PF13193 AMP-binding enzyme C-terminal domain SDY_0526 PF00857 Isochorismatase family SDY_0526 PF00550 Phosphopantetheine attachment site SDY_0528 PF03061 Thioesterase superfamily SDY_0530 PF04328 Selenoprotein, putative SDY_0531 PF00465 Iron-containing alcohol dehydrogenase SDY_0534 PF01507 Phosphoadenosine phosphosulfate reductase family SDY_0534 PF11922 Domain of unknown function (DUF3440) SDY_0535 PF01527 Transposase SDY_0536 PF13333 Integrase core domain SDY_0536 PF00665 Integrase core domain SDY_0536 PF13276 HTH-like domain SDY_0537 PF11922 Domain of unknown function (DUF3440) SDY_0537 PF01507 Phosphoadenosine phosphosulfate reductase family SDY_0538 PF03400 IS1 transposase SDY_0540 PF10417 C-terminal domain of 1-Cys peroxiredoxin SDY_0540 PF00578 AhpC/TSA family SDY_0541 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_0541 PF13192 Thioredoxin domain SDY_0542 PF00582 Universal stress protein family SDY_0543 PF12759 InsA C-terminal domain SDY_0543 PF03811 InsA N-terminal domain SDY_0544 PF03400 IS1 transposase SDY_0545 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SDY_0546 PF00313 'Cold-shock' DNA-binding domain SDY_0547 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SDY_0549 PF02416 mttA/Hcf106 family SDY_0550 PF04055 Radical SAM superfamily SDY_0550 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SDY_0551 PF03466 LysR substrate binding domain SDY_0551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_0552 PF03099 Biotin/lipoate A/B protein ligase family SDY_0553 PF04359 Protein of unknown function (DUF493) SDY_0554 PF07943 Penicillin-binding protein 5, C-terminal domain SDY_0554 PF00768 D-alanyl-D-alanine carboxypeptidase SDY_0555 PF05036 Sporulation related domain SDY_0555 PF03330 Lytic transglycolase SDY_0556 PF01098 Cell cycle protein SDY_0557 PF03717 Penicillin-binding Protein dimerisation domain SDY_0557 PF00905 Penicillin binding protein transpeptidase domain SDY_0558 PF02590 Predicted SPOUT methyltransferase SDY_0561 PF01467 Cytidylyltransferase-like SDY_0562 PF06144 DNA polymerase III, delta subunit SDY_0562 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SDY_0563 PF04390 Lipopolysaccharide-assembly SDY_0564 PF00133 tRNA synthetases class I (I, L, M and V) SDY_0564 PF08264 Anticodon-binding domain of tRNA SDY_0564 PF13603 Leucyl-tRNA synthetase, Domain 2 SDY_0565 PF01527 Transposase SDY_0566 PF00665 Integrase core domain SDY_0567 PF07295 Zinc-ribbon containing domain SDY_0568 PF08238 Sel1 repeat SDY_0569 PF03400 IS1 transposase SDY_0570 PF03811 InsA N-terminal domain SDY_0570 PF12759 InsA C-terminal domain SDY_0579 PF07102 Protein of unknown function (DUF1364) SDY_0585 PF01527 Transposase SDY_0586 PF01527 Transposase SDY_0587 PF00665 Integrase core domain SDY_0588 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0590 PF01527 Transposase SDY_0591 PF13276 HTH-like domain SDY_0591 PF00665 Integrase core domain SDY_0591 PF13333 Integrase core domain SDY_0592 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_0593 PF00795 Carbon-nitrogen hydrolase SDY_0594 PF00571 CBS domain SDY_0594 PF03471 Transporter associated domain SDY_0595 PF02130 Uncharacterized protein family UPF0054 SDY_0596 PF02562 PhoH-like protein SDY_0597 PF01938 TRAM domain SDY_0597 PF00919 Uncharacterized protein family UPF0004 SDY_0597 PF04055 Radical SAM superfamily SDY_0598 PF01494 FAD binding domain SDY_0608 PF13537 Glutamine amidotransferase domain SDY_0608 PF00733 Asparagine synthase SDY_0609 PF13344 Haloacid dehalogenase-like hydrolase SDY_0610 PF01047 MarR family SDY_0610 PF00480 ROK family SDY_0611 PF01979 Amidohydrolase family SDY_0612 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SDY_0613 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDY_0613 PF00367 phosphotransferase system, EIIB SDY_0613 PF02378 Phosphotransferase system, EIIC SDY_0614 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SDY_0614 PF00749 tRNA synthetases class I (E and Q), catalytic domain SDY_0615 PF03400 IS1 transposase SDY_0616 PF03811 InsA N-terminal domain SDY_0616 PF12759 InsA C-terminal domain SDY_0617 PF03400 IS1 transposase SDY_0618 PF03573 outer membrane porin, OprD family SDY_0619 PF12759 InsA C-terminal domain SDY_0619 PF03811 InsA N-terminal domain SDY_0623 PF01475 Ferric uptake regulator family SDY_0624 PF00258 Flavodoxin SDY_0625 PF01402 Ribbon-helix-helix protein, copG family SDY_0626 PF12697 Alpha/beta hydrolase family SDY_0627 PF17206 SeqA protein N-terminal domain SDY_0627 PF03925 SeqA protein C-terminal domain SDY_0628 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDY_0628 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDY_0628 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDY_0628 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDY_0629 PF00072 Response regulator receiver domain SDY_0629 PF00486 Transcriptional regulatory protein, C terminal SDY_0631 PF02669 K+-transporting ATPase, c chain SDY_0634 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SDY_0635 PF10725 Protein of unknown function (DUF2517) SDY_0636 PF05593 RHS Repeat SDY_0636 PF03527 RHS protein SDY_0637 PF03400 IS1 transposase SDY_0640 PF03400 IS1 transposase SDY_0642 PF08349 Protein of unknown function (DUF1722) SDY_0643 PF00875 DNA photolyase SDY_0643 PF03441 FAD binding domain of DNA photolyase SDY_0645 PF01784 NIF3 (NGG1p interacting factor 3) SDY_0646 PF02682 Carboxyltransferase domain, subdomain C and D SDY_0647 PF02626 Carboxyltransferase domain, subdomain A and B SDY_0648 PF03746 LamB/YcsF family SDY_0649 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SDY_0649 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SDY_0649 PF06827 Zinc finger found in FPG and IleRS SDY_0650 PF05145 Transition state regulatory protein AbrB SDY_0651 PF00419 Fimbrial protein SDY_0652 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SDY_0652 PF02753 Pili assembly chaperone PapD, C-terminal domain SDY_0653 PF03400 IS1 transposase SDY_0655 PF00419 Fimbrial protein SDY_0656 PF03400 IS1 transposase SDY_0657 PF12759 InsA C-terminal domain SDY_0657 PF03811 InsA N-terminal domain SDY_0658 PF00285 Citrate synthase, C-terminal domain SDY_0659 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SDY_0660 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SDY_0661 PF02910 Fumarate reductase flavoprotein C-term SDY_0661 PF00890 FAD binding domain SDY_0662 PF13085 2Fe-2S iron-sulfur cluster binding domain SDY_0664 PF16870 2-oxoglutarate dehydrogenase C-terminal SDY_0664 PF02779 Transketolase, pyrimidine binding domain SDY_0664 PF00676 Dehydrogenase E1 component SDY_0664 PF16078 2-oxoglutarate dehydrogenase N-terminus SDY_0665 PF02817 e3 binding domain SDY_0665 PF00364 Biotin-requiring enzyme SDY_0665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SDY_0666 PF00549 CoA-ligase SDY_0666 PF08442 ATP-grasp domain SDY_0667 PF00549 CoA-ligase SDY_0667 PF02629 CoA binding domain SDY_0668 PF03811 InsA N-terminal domain SDY_0668 PF12759 InsA C-terminal domain SDY_0669 PF03400 IS1 transposase SDY_0670 PF03811 InsA N-terminal domain SDY_0670 PF12759 InsA C-terminal domain SDY_0671 PF03400 IS1 transposase SDY_0673 PF07476 Methylaspartate ammonia-lyase C-terminus SDY_0673 PF05034 Methylaspartate ammonia-lyase N-terminus SDY_0674 PF06368 Methylaspartate mutase E chain (MutE) SDY_0675 PF13941 MutL protein SDY_0676 PF02310 B12 binding domain SDY_0680 PF01654 Cytochrome bd terminal oxidase subunit I SDY_0681 PF02322 Cytochrome bd terminal oxidase subunit II SDY_0682 PF08173 Membrane bound YbgT-like protein SDY_0683 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SDY_0684 PF03061 Thioesterase superfamily SDY_0685 PF01618 MotA/TolQ/ExbB proton channel family SDY_0686 PF02472 Biopolymer transport protein ExbD/TolR SDY_0687 PF06519 TolA C-terminal SDY_0688 PF07676 WD40-like Beta Propeller Repeat SDY_0688 PF04052 TolB amino-terminal domain SDY_0689 PF00691 OmpA family SDY_0690 PF16331 TolA binding protein trimerisation SDY_0690 PF13174 Tetratricopeptide repeat SDY_0694 PF02445 Quinolinate synthetase A protein SDY_0695 PF04973 Nicotinamide mononucleotide transporter SDY_0696 PF01545 Cation efflux family SDY_0697 PF13985 YbgS-like protein SDY_0701 PF00793 DAHP synthetase I family SDY_0702 PF00300 Histidine phosphatase superfamily (branch 1) SDY_0703 PF01263 Aldose 1-epimerase SDY_0704 PF00288 GHMP kinases N terminal domain SDY_0704 PF08544 GHMP kinases C terminal SDY_0704 PF10509 Galactokinase galactose-binding signature SDY_0705 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SDY_0705 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SDY_0706 PF16363 GDP-mannose 4,6 dehydratase SDY_0707 PF00005 ABC transporter SDY_0708 PF03459 TOBE domain SDY_0708 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_0709 PF10766 Multidrug efflux pump-associated protein AcrZ SDY_0711 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0712 PF03459 TOBE domain SDY_0712 PF00005 ABC transporter SDY_0715 PF01527 Transposase SDY_0716 PF03400 IS1 transposase SDY_0720 PF01527 Transposase SDY_0722 PF01527 Transposase SDY_0723 PF01527 Transposase SDY_0724 PF13276 HTH-like domain SDY_0724 PF13333 Integrase core domain SDY_0724 PF00665 Integrase core domain SDY_0726 PF17288 Terminase RNAseH like domain SDY_0726 PF04466 Phage terminase large subunit SDY_0727 PF13333 Integrase core domain SDY_0727 PF00665 Integrase core domain SDY_0727 PF13276 HTH-like domain SDY_0728 PF01527 Transposase SDY_0729 PF00665 Integrase core domain SDY_0729 PF13276 HTH-like domain SDY_0730 PF01527 Transposase SDY_0734 PF12759 InsA C-terminal domain SDY_0734 PF03811 InsA N-terminal domain SDY_0735 PF03400 IS1 transposase SDY_0736 PF05958 tRNA (Uracil-5-)-methyltransferase SDY_0737 PF10767 Protein of unknown function (DUF2593) SDY_0738 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0739 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0740 PF08402 TOBE domain SDY_0740 PF00005 ABC transporter SDY_0741 PF13416 Bacterial extracellular solute-binding protein SDY_0742 PF10722 Putative bacterial sensory transduction regulator SDY_0743 PF18030 RimK PreATP-grasp domain SDY_0743 PF08443 RimK-like ATP-grasp domain SDY_0744 PF00881 Nitroreductase family SDY_0745 PF07214 Protein of unknown function (DUF1418) SDY_0746 PF00462 Glutaredoxin SDY_0747 PF11045 Putative inner membrane protein of Enterobacteriaceae SDY_0748 PF06826 Predicted Permease Membrane Region SDY_0748 PF02080 TrkA-C domain SDY_0750 PF00440 Bacterial regulatory proteins, tetR family SDY_0751 PF07690 Major Facilitator Superfamily SDY_0753 PF03400 IS1 transposase SDY_0754 PF12759 InsA C-terminal domain SDY_0754 PF03811 InsA N-terminal domain SDY_0755 PF12911 N-terminal TM domain of oligopeptide transport permease C SDY_0755 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0756 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0757 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_0758 PF00005 ABC transporter SDY_0758 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_0759 PF01112 Asparaginase SDY_0760 PF03453 MoeA N-terminal region (domain I and II) SDY_0760 PF03454 MoeA C-terminal region (domain IV) SDY_0760 PF00994 Probable molybdopterin binding domain SDY_0761 PF00899 ThiF family SDY_0762 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDY_0763 PF04055 Radical SAM superfamily SDY_0764 PF01228 Glycine radical SDY_0764 PF02901 Pyruvate formate lyase-like SDY_0766 PF03400 IS1 transposase SDY_0769 PF13333 Integrase core domain SDY_0769 PF00665 Integrase core domain SDY_0769 PF13276 HTH-like domain SDY_0770 PF01527 Transposase SDY_0775 PF07350 Protein of unknown function (DUF1479) SDY_0776 PF12848 ABC transporter SDY_0776 PF00005 ABC transporter SDY_0777 PF17969 L,D-transpeptidase C-terminal domain SDY_0777 PF03734 L,D-transpeptidase catalytic domain SDY_0779 PF01325 Iron dependent repressor, N-terminal DNA binding domain SDY_0779 PF02742 Iron dependent repressor, metal binding and dimerisation domain SDY_0780 PF00884 Sulfatase SDY_0781 PF13505 Outer membrane protein beta-barrel domain SDY_0783 PF00210 Ferritin-like domain SDY_0784 PF03811 InsA N-terminal domain SDY_0784 PF12759 InsA C-terminal domain SDY_0785 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_0786 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0787 PF00005 ABC transporter SDY_0789 PF03400 IS1 transposase SDY_0790 PF05971 RNA methyltransferase SDY_0791 PF07338 Protein of unknown function (DUF1471) SDY_0792 PF00593 TonB dependent receptor SDY_0792 PF07715 TonB-dependent Receptor Plug Domain SDY_0793 PF01609 Transposase DDE domain SDY_0793 PF13006 Insertion element 4 transposase N-terminal SDY_0794 PF07715 TonB-dependent Receptor Plug Domain SDY_0794 PF00593 TonB dependent receptor SDY_0795 PF13640 2OG-Fe(II) oxygenase superfamily SDY_0795 PF18331 PKHD-type hydroxylase C-terminal domain SDY_0796 PF01258 Prokaryotic dksA/traR C4-type zinc finger SDY_0797 PF07338 Protein of unknown function (DUF1471) SDY_0798 PF02615 Malate/L-lactate dehydrogenase SDY_0799 PF02885 Glycosyl transferase family, helical bundle domain SDY_0800 PF00270 DEAD/DEAH box helicase SDY_0800 PF06733 DEAD_2 SDY_0800 PF13307 Helicase C-terminal domain SDY_0801 PF03400 IS1 transposase SDY_0805 PF03400 IS1 transposase SDY_0806 PF00271 Helicase conserved C-terminal domain SDY_0806 PF00270 DEAD/DEAH box helicase SDY_0807 PF00440 Bacterial regulatory proteins, tetR family SDY_0807 PF09209 Tetracyclin repressor-like, C-terminal domain SDY_0808 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_0809 PF00005 ABC transporter SDY_0812 PF11076 Putative inner membrane protein YbhQ SDY_0813 PF03372 Endonuclease/Exonuclease/phosphatase family SDY_0814 PF13091 PLD-like domain SDY_0815 PF03706 Lysylphosphatidylglycerol synthase TM region SDY_0817 PF01027 Inhibitor of apoptosis-promoting Bax1 SDY_0818 PF03400 IS1 transposase SDY_0819 PF01527 Transposase SDY_0820 PF00665 Integrase core domain SDY_0820 PF13276 HTH-like domain SDY_0821 PF02391 MoaE protein SDY_0822 PF02597 ThiS family SDY_0823 PF01967 MoaC family SDY_0824 PF00994 Probable molybdopterin binding domain SDY_0825 PF06463 Molybdenum Cofactor Synthesis C SDY_0825 PF04055 Radical SAM superfamily SDY_0826 PF01933 Uncharacterised protein family UPF0052 SDY_0827 PF04851 Type III restriction enzyme, res subunit SDY_0827 PF12344 Ultra-violet resistance protein B SDY_0827 PF00271 Helicase conserved C-terminal domain SDY_0827 PF17757 UvrB interaction domain SDY_0827 PF02151 UvrB/uvrC motif SDY_0829 PF08241 Methyltransferase domain SDY_0830 PF00155 Aminotransferase class I and II SDY_0831 PF04055 Radical SAM superfamily SDY_0831 PF06968 Biotin and Thiamin Synthesis associated domain SDY_0832 PF00202 Aminotransferase class-III SDY_0833 PF01161 Phosphatidylethanolamine-binding protein SDY_0834 PF12468 Type III secretion system leucine rich repeat protein SDY_0834 PF14496 C-terminal novel E3 ligase, LRR-interacting SDY_0835 PF01527 Transposase SDY_0836 PF13276 HTH-like domain SDY_0836 PF00665 Integrase core domain SDY_0836 PF13333 Integrase core domain SDY_0838 PF13417 Glutathione S-transferase, N-terminal domain SDY_0838 PF00043 Glutathione S-transferase, C-terminal domain SDY_0839 PF03400 IS1 transposase SDY_0841 PF07943 Penicillin-binding protein 5, C-terminal domain SDY_0841 PF00768 D-alanyl-D-alanine carboxypeptidase SDY_0842 PF00455 DeoR C terminal sensor domain SDY_0842 PF08220 DeoR-like helix-turn-helix domain SDY_0843 PF01569 PAP2 superfamily SDY_0845 PF01527 Transposase SDY_0846 PF00665 Integrase core domain SDY_0847 PF13276 HTH-like domain SDY_0847 PF00665 Integrase core domain SDY_0847 PF13333 Integrase core domain SDY_0849 PF01527 Transposase SDY_0850 PF13276 HTH-like domain SDY_0850 PF00665 Integrase core domain SDY_0850 PF13333 Integrase core domain SDY_0852 PF01835 MG2 domain SDY_0852 PF07703 Alpha-2-macroglobulin bait region domain SDY_0852 PF00207 Alpha-2-macroglobulin family SDY_0853 PF08486 Stage II sporulation protein SDY_0853 PF10062 Predicted secreted protein (DUF2300) SDY_0856 PF00512 His Kinase A (phospho-acceptor) domain SDY_0856 PF00072 Response regulator receiver domain SDY_0856 PF09456 RcsC Alpha-Beta-Loop (ABL) SDY_0856 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_0857 PF00072 Response regulator receiver domain SDY_0857 PF00196 Bacterial regulatory proteins, luxR family SDY_0858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_0858 PF01627 Hpt domain SDY_0858 PF16359 RcsD-ABL domain SDY_0859 PF03400 IS1 transposase SDY_0861 PF00267 Gram-negative porin SDY_0862 PF02424 ApbE family SDY_0863 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SDY_0863 PF12833 Helix-turn-helix domain SDY_0863 PF02805 Metal binding domain of Ada SDY_0863 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SDY_0864 PF13532 2OG-Fe(II) oxygenase superfamily SDY_0865 PF00005 ABC transporter SDY_0866 PF06039 Malate:quinone oxidoreductase (Mqo) SDY_0867 PF13333 Integrase core domain SDY_0867 PF00665 Integrase core domain SDY_0867 PF13276 HTH-like domain SDY_0868 PF01527 Transposase SDY_0870 PF12800 4Fe-4S binding domain SDY_0870 PF13187 4Fe-4S dicluster domain SDY_0870 PF00037 4Fe-4S binding domain SDY_0871 PF03927 NapD protein SDY_0872 PF01568 Molydopterin dinucleotide binding domain SDY_0872 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SDY_0872 PF00384 Molybdopterin oxidoreductase SDY_0873 PF12838 4Fe-4S dicluster domain SDY_0873 PF12800 4Fe-4S binding domain SDY_0874 PF13237 4Fe-4S dicluster domain SDY_0874 PF12801 4Fe-4S binding domain SDY_0875 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SDY_0876 PF03264 NapC/NirT cytochrome c family, N-terminal region SDY_0877 PF00005 ABC transporter SDY_0878 PF03379 CcmB protein SDY_0879 PF01578 Cytochrome C assembly protein SDY_0880 PF04995 Heme exporter protein D (CcmD) SDY_0881 PF03100 CcmE SDY_0882 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SDY_0882 PF01578 Cytochrome C assembly protein SDY_0883 PF08534 Redoxin SDY_0884 PF03918 Cytochrome C biogenesis protein SDY_0885 PF00072 Response regulator receiver domain SDY_0885 PF00196 Bacterial regulatory proteins, luxR family SDY_0886 PF03400 IS1 transposase SDY_0888 PF12759 InsA C-terminal domain SDY_0888 PF03811 InsA N-terminal domain SDY_0889 PF03797 Autotransporter beta-domain SDY_0889 PF03212 Pertactin SDY_0889 PF16168 Adhesin of bacterial autotransporter system, probable stalk SDY_0891 PF00884 Sulfatase SDY_0891 PF11893 Domain of unknown function (DUF3413) SDY_0892 PF07208 Protein of unknown function (DUF1414) SDY_0893 PF04245 37-kD nucleoid-associated bacterial protein SDY_0894 PF01386 Ribosomal L25p family SDY_0895 PF04851 Type III restriction enzyme, res subunit SDY_0895 PF00271 Helicase conserved C-terminal domain SDY_0896 PF01479 S4 domain SDY_0896 PF00849 RNA pseudouridylate synthase SDY_0897 PF07690 Major Facilitator Superfamily SDY_0898 PF13989 YejG-like protein SDY_0899 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_0899 PF00005 ABC transporter SDY_0900 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0900 PF12911 N-terminal TM domain of oligopeptide transport permease C SDY_0901 PF00528 Binding-protein-dependent transport system inner membrane component SDY_0902 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_0903 PF12792 CSS motif domain associated with EAL SDY_0903 PF00563 EAL domain SDY_0904 PF00877 NlpC/P60 family SDY_0905 PF01569 PAP2 superfamily SDY_0906 PF02492 CobW/HypB/UreG, nucleotide-binding domain SDY_0906 PF07683 Cobalamin synthesis protein cobW C-terminal domain SDY_0907a PF03692 Putative zinc- or iron-chelating domain SDY_0908 PF01132 Elongation factor P (EF-P) OB domain SDY_0908 PF08207 Elongation factor P (EF-P) KOW-like domain SDY_0908 PF09285 Elongation factor P, C-terminal SDY_0909 PF07690 Major Facilitator Superfamily SDY_0910 PF03400 IS1 transposase SDY_0912 PF00577 Outer membrane usher protein SDY_0912 PF13954 PapC N-terminal domain SDY_0912 PF13953 PapC C-terminal domain SDY_0913 PF03400 IS1 transposase SDY_0914 PF00419 Fimbrial protein SDY_0915 PF00419 Fimbrial protein SDY_0916 PF00419 Fimbrial protein SDY_0917 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SDY_0917 PF02753 Pili assembly chaperone PapD, C-terminal domain SDY_0918 PF01180 Dihydroorotate dehydrogenase SDY_0919 PF07126 Cell-division protein ZapC SDY_0920 PF03476 MOSC N-terminal beta barrel domain SDY_0920 PF03473 MOSC domain SDY_0920 PF00111 2Fe-2S iron-sulfur cluster binding domain SDY_0921 PF10672 S-adenosylmethionine-dependent methyltransferase SDY_0921 PF02926 THUMP domain SDY_0921 PF01170 Putative RNA methylase family UPF0020 SDY_0922 PF16326 ABC transporter C-terminal domain SDY_0922 PF12848 ABC transporter SDY_0922 PF00005 ABC transporter SDY_0923 PF04403 Paraquat-inducible protein A SDY_0924 PF02470 MlaD protein SDY_0925 PF03886 ABC-type transport auxiliary lipoprotein component SDY_0926 PF04957 Ribosome modulation factor SDY_0927 PF07977 FabA-like domain SDY_0929 PF17414 MatP C-terminal ribbon-helix-helix domain SDY_0929 PF06303 MatP N-terminal domain SDY_0930 PF01389 OmpA-like transmembrane domain SDY_0930 PF00691 OmpA family SDY_0931 PF01527 Transposase SDY_0932 PF13333 Integrase core domain SDY_0932 PF13276 HTH-like domain SDY_0932 PF00665 Integrase core domain SDY_0934 PF04993 TfoX N-terminal domain SDY_0934 PF04994 TfoX C-terminal domain SDY_0935 PF12805 FUSC-like inner membrane protein yccS SDY_0936 PF03733 Inner membrane component domain SDY_0937 PF13361 UvrD-like helicase C-terminal domain SDY_0937 PF00580 UvrD/REP helicase N-terminal domain SDY_0937 PF12462 DNA helicase IV / RNA helicase N terminal SDY_0938 PF02142 MGS-like domain SDY_0939 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SDY_0940 PF13380 CoA binding domain SDY_0941 PF08755 Hemimethylated DNA-binding protein YccV like SDY_0942 PF17785 PUA-like domain SDY_0942 PF10672 S-adenosylmethionine-dependent methyltransferase SDY_0943 PF00708 Acylphosphatase SDY_0944 PF04358 DsrC like protein SDY_0945 PF01027 Inhibitor of apoptosis-promoting Bax1 SDY_0947 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SDY_0947 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SDY_0949 PF01292 Prokaryotic cytochrome b561 SDY_0950 PF01750 Hydrogenase maturation protease SDY_0951 PF07449 Hydrogenase-1 expression protein HyaE SDY_0953 PF01654 Cytochrome bd terminal oxidase subunit I SDY_0954 PF02322 Cytochrome bd terminal oxidase subunit II SDY_0955 PF08173 Membrane bound YbgT-like protein SDY_0956 PF00328 Histidine phosphatase superfamily (branch 2) SDY_0957 PF02706 Chain length determinant protein SDY_0957 PF13614 AAA domain SDY_0957 PF13807 G-rich domain on putative tyrosine kinase SDY_0958 PF01451 Low molecular weight phosphotyrosine protein phosphatase SDY_0959 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SDY_0959 PF02563 Polysaccharide biosynthesis/export protein SDY_0959 PF10531 SLBB domain SDY_0960 PF06082 Exopolysaccharide biosynthesis protein YbjH SDY_0961 PF06251 Capsule biosynthesis GfcC SDY_0962 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SDY_0964 PF00313 'Cold-shock' DNA-binding domain SDY_0965 PF03400 IS1 transposase SDY_0966 PF12801 4Fe-4S binding domain SDY_0968 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_0969 PF00072 Response regulator receiver domain SDY_0969 PF00486 Transcriptional regulatory protein, C terminal SDY_0972 PF02613 Nitrate reductase delta subunit SDY_0974 PF00226 DnaJ domain SDY_0974 PF01556 DnaJ C terminal domain SDY_0975 PF03400 IS1 transposase SDY_0976 PF03400 IS1 transposase SDY_0978 PF00328 Histidine phosphatase superfamily (branch 2) SDY_0979 PF13993 YccJ-like protein SDY_0980 PF03358 NADPH-dependent FMN reductase SDY_0980a PF10685 Stress-induced bacterial acidophilic repeat motif SDY_0981 PF00860 Permease family SDY_0982 PF01613 Flavin reductase like domain SDY_0983 PF00881 Nitroreductase family SDY_0984 PF00561 alpha/beta hydrolase fold SDY_0985 PF01042 Endoribonuclease L-PSP SDY_0987 PF00296 Luciferase-like monooxygenase SDY_0988 PF08362 YcdC-like protein, C-terminal region SDY_0988 PF00440 Bacterial regulatory proteins, tetR family SDY_0990 PF00474 Sodium:solute symporter family SDY_0993 PF12759 InsA C-terminal domain SDY_0993 PF03811 InsA N-terminal domain SDY_0994 PF03400 IS1 transposase SDY_0996 PF00196 Bacterial regulatory proteins, luxR family SDY_0997 PF10627 Curli assembly protein CsgE SDY_0998 PF10614 Type VIII secretion system (T8SS), CsgF protein SDY_0999 PF03783 Curli production assembly/transport component CsgG SDY_1000 PF03400 IS1 transposase SDY_1001 PF06496 Protein of unknown function (DUF1097) SDY_1002 PF02613 Nitrate reductase delta subunit SDY_1003 PF02811 PHP domain SDY_1004 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDY_1009 PF06755 CbtA_toxin of type IV toxin-antitoxin system SDY_1010 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SDY_1012 PF06174 Protein of unknown function (DUF987) SDY_1013 PF04002 RadC-like JAB domain SDY_1014 PF03230 Antirestriction protein SDY_1015 PF06067 Domain of unknown function (DUF932) SDY_1018 PF13333 Integrase core domain SDY_1018 PF00665 Integrase core domain SDY_1018 PF13276 HTH-like domain SDY_1019 PF00665 Integrase core domain SDY_1019 PF13276 HTH-like domain SDY_1020 PF01527 Transposase SDY_1021 PF03400 IS1 transposase SDY_1022 PF00593 TonB dependent receptor SDY_1022 PF07715 TonB-dependent Receptor Plug Domain SDY_1023 PF00756 Putative esterase SDY_1024 PF00756 Putative esterase SDY_1024 PF11806 Domain of unknown function (DUF3327) SDY_1025 PF00005 ABC transporter SDY_1025 PF00664 ABC transporter transmembrane region SDY_1026 PF06722 Protein of unknown function (DUF1205) SDY_1030 PF01527 Transposase SDY_1031 PF03400 IS1 transposase SDY_1033 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SDY_1034 PF01794 Ferric reductase like transmembrane component SDY_1035 PF00174 Oxidoreductase molybdopterin binding domain SDY_1036 PF03400 IS1 transposase SDY_1038 PF00576 HIUase/Transthyretin family SDY_1039 PF00072 Response regulator receiver domain SDY_1039 PF00486 Transcriptional regulatory protein, C terminal SDY_1040 PF03400 IS1 transposase SDY_1045 PF18284 DNA methylase N-terminal domain SDY_1045 PF00145 C-5 cytosine-specific DNA methylase SDY_1046 PF03852 DNA mismatch endonuclease Vsr SDY_1047 PF00892 EamA-like transporter family SDY_1048 PF05661 Protein of unknown function (DUF808) SDY_1049 PF09926 Uncharacterized small protein (DUF2158) SDY_1050 PF17151 Periplasmic sensor domain SDY_1050 PF00990 Diguanylate cyclase, GGDEF domain SDY_1052 PF10733 Protein of unknown function (DUF2525) SDY_1053 PF10781 Dextransucrase DSRB SDY_1054 PF03400 IS1 transposase SDY_1055 PF03400 IS1 transposase SDY_1056 PF03811 InsA N-terminal domain SDY_1056 PF12759 InsA C-terminal domain SDY_1057 PF03400 IS1 transposase SDY_1060 PF08242 Methyltransferase domain SDY_1061 PF03400 IS1 transposase SDY_1063 PF13276 HTH-like domain SDY_1063 PF00665 Integrase core domain SDY_1063 PF13333 Integrase core domain SDY_1064 PF01527 Transposase SDY_1065 PF08400 Prophage tail fibre N-terminal SDY_1065 PF07484 Phage Tail Collar Domain SDY_1065 PF03335 Phage tail fibre repeat SDY_1068 PF01527 Transposase SDY_1069 PF13276 HTH-like domain SDY_1069 PF13333 Integrase core domain SDY_1069 PF00665 Integrase core domain SDY_1070 PF03400 IS1 transposase SDY_1072 PF06167 Glucose-regulated metallo-peptidase M90 SDY_1074 PF11924 Inverse autotransporter, beta-domain SDY_1074 PF09134 Invasin, domain 3 SDY_1074 PF02369 Bacterial Ig-like domain (group 1) SDY_1075 PF02369 Bacterial Ig-like domain (group 1) SDY_1075 PF11924 Inverse autotransporter, beta-domain SDY_1075 PF09134 Invasin, domain 3 SDY_1076 PF09134 Invasin, domain 3 SDY_1076 PF11924 Inverse autotransporter, beta-domain SDY_1076 PF02369 Bacterial Ig-like domain (group 1) SDY_1077 PF02369 Bacterial Ig-like domain (group 1) SDY_1077 PF09134 Invasin, domain 3 SDY_1077 PF11924 Inverse autotransporter, beta-domain SDY_1078 PF13276 HTH-like domain SDY_1078 PF00665 Integrase core domain SDY_1079 PF01527 Transposase SDY_1081 PF03400 IS1 transposase SDY_1083 PF03400 IS1 transposase SDY_1084 PF02586 SOS response associated peptidase (SRAP) SDY_1085 PF01206 Sulfurtransferase TusA SDY_1086 PF04143 Sulphur transport SDY_1087 PF13987 YedD-like protein SDY_1088 PF02806 Alpha amylase, C-terminal all-beta domain SDY_1088 PF00128 Alpha amylase, catalytic domain SDY_1090 PF02561 Flagellar protein FliS SDY_1091 PF07195 Flagellar hook-associated protein 2 C-terminus SDY_1091 PF02465 Flagellar hook-associated protein 2 N-terminus SDY_1093 PF03400 IS1 transposase SDY_1094 PF03811 InsA N-terminal domain SDY_1094 PF12759 InsA C-terminal domain SDY_1095 PF04542 Sigma-70 region 2 SDY_1095 PF04539 Sigma-70 region 3 SDY_1095 PF04545 Sigma-70, region 4 SDY_1096 PF02899 Phage integrase, N-terminal SAM-like domain SDY_1097 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_1098 PF00291 Pyridoxal-phosphate dependent enzyme SDY_1099 PF00528 Binding-protein-dependent transport system inner membrane component SDY_1100 PF00005 ABC transporter SDY_1102 PF03400 IS1 transposase SDY_1103 PF10769 Protein of unknown function (DUF2594) SDY_1104 PF00072 Response regulator receiver domain SDY_1104 PF00196 Bacterial regulatory proteins, luxR family SDY_1105 PF02151 UvrB/uvrC motif SDY_1105 PF08459 UvrC Helix-hairpin-helix N-terminal SDY_1105 PF01541 GIY-YIG catalytic domain SDY_1106 PF01066 CDP-alcohol phosphatidyltransferase SDY_1110 PF03695 Uncharacterised protein family (UPF0149) SDY_1110 PF02810 SEC-C motif SDY_1111 PF03222 Tryptophan/tyrosine permease family SDY_1112 PF10678 Protein of unknown function (DUF2492) SDY_1113 PF00210 Ferritin-like domain SDY_1114 PF13992 YecR-like lipoprotein SDY_1115 PF03400 IS1 transposase SDY_1116 PF00210 Ferritin-like domain SDY_1117 PF10964 Protein of unknown function (DUF2766) SDY_1119 PF03400 IS1 transposase SDY_1120 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_1121 PF00005 ABC transporter SDY_1122 PF02653 Branched-chain amino acid transport system / permease component SDY_1123 PF01527 Transposase SDY_1125 PF10709 Protein of unknown function (DUF2511) SDY_1127 PF04234 CopC domain SDY_1128 PF06440 DNA polymerase III, theta subunit SDY_1129 PF00795 Carbon-nitrogen hydrolase SDY_1130 PF00929 Exonuclease SDY_1131 PF00326 Prolyl oligopeptidase family SDY_1131 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SDY_1132 PF04391 Protein of unknown function (DUF533) SDY_1133 PF13995 YebF-like protein SDY_1134 PF07130 YebG protein SDY_1135 PF02222 ATP-grasp domain SDY_1136 PF01081 KDPG and KHG aldolase SDY_1137 PF00920 Dehydratase family SDY_1138 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SDY_1138 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SDY_1141 PF00224 Pyruvate kinase, barrel domain SDY_1141 PF02887 Pyruvate kinase, alpha/beta domain SDY_1142 PF03279 Bacterial lipid A biosynthesis acyltransferase SDY_1143 PF01551 Peptidase family M23 SDY_1143 PF01476 LysM domain SDY_1143 PF08525 Opacity-associated protein A N-terminal motif SDY_1144 PF01297 Zinc-uptake complex component A periplasmic SDY_1145 PF00005 ABC transporter SDY_1146 PF00950 ABC 3 transport family SDY_1147 PF05496 Holliday junction DNA helicase RuvB P-loop domain SDY_1147 PF05491 RuvB C-terminal winged helix domain SDY_1147 PF17864 RuvB AAA lid domain SDY_1148 PF07499 RuvA, C-terminal domain SDY_1148 PF01330 RuvA N terminal domain SDY_1149 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SDY_1150 PF02075 Crossover junction endodeoxyribonuclease RuvC SDY_1151 PF01709 Transcriptional regulator SDY_1152 PF00293 NUDIX domain SDY_1153 PF02938 GAD domain SDY_1153 PF00152 tRNA synthetases class II (D, K and N) SDY_1153 PF01336 OB-fold nucleic acid binding domain SDY_1154 PF00857 Isochorismatase family SDY_1155 PF02371 Transposase IS116/IS110/IS902 family SDY_1155 PF01548 Transposase SDY_1156 PF12759 InsA C-terminal domain SDY_1156 PF03811 InsA N-terminal domain SDY_1157 PF03400 IS1 transposase SDY_1158 PF01527 Transposase SDY_1161 PF03400 IS1 transposase SDY_1162 PF13276 HTH-like domain SDY_1162 PF00665 Integrase core domain SDY_1163 PF01527 Transposase SDY_1164 PF12759 InsA C-terminal domain SDY_1164 PF03811 InsA N-terminal domain SDY_1165 PF03400 IS1 transposase SDY_1167 PF01904 Protein of unknown function DUF72 SDY_1168 PF01124 MAPEG family SDY_1169 PF13649 Methyltransferase domain SDY_1170 PF08003 Protein of unknown function (DUF1698) SDY_1171 PF00384 Molybdopterin oxidoreductase SDY_1171 PF18364 Molybdopterin oxidoreductase N-terminal domain SDY_1171 PF01568 Molydopterin dinucleotide binding domain SDY_1174 PF03400 IS1 transposase SDY_1176 PF03400 IS1 transposase SDY_1178 PF03932 CutC family SDY_1179 PF06185 YecM protein SDY_1180 PF00750 tRNA synthetases class I (R) SDY_1180 PF05746 DALR anticodon binding domain SDY_1180 PF03485 Arginyl tRNA synthetase N terminal domain SDY_1181 PF03811 InsA N-terminal domain SDY_1181 PF12759 InsA C-terminal domain SDY_1182 PF03400 IS1 transposase SDY_1183 PF06366 Flagellar protein FlhE SDY_1184 PF00771 FHIPEP family SDY_1185 PF03400 IS1 transposase SDY_1186 PF01527 Transposase SDY_1187 PF13276 HTH-like domain SDY_1187 PF00665 Integrase core domain SDY_1187 PF13333 Integrase core domain SDY_1189 PF01618 MotA/TolQ/ExbB proton channel family SDY_1190 PF05280 Flagellar transcriptional activator (FlhC) SDY_1191 PF05247 Flagellar transcriptional activator (FlhD) SDY_1192 PF00582 Universal stress protein family SDY_1193 PF00982 Glycosyltransferase family 20 SDY_1194 PF02358 Trehalose-phosphatase SDY_1195 PF00665 Integrase core domain SDY_1196 PF01527 Transposase SDY_1197 PF13333 Integrase core domain SDY_1197 PF00665 Integrase core domain SDY_1197 PF13276 HTH-like domain SDY_1198 PF01527 Transposase SDY_1199 PF12759 InsA C-terminal domain SDY_1199 PF03811 InsA N-terminal domain SDY_1200 PF03400 IS1 transposase SDY_1201 PF03400 IS1 transposase SDY_1202 PF16168 Adhesin of bacterial autotransporter system, probable stalk SDY_1202 PF03797 Autotransporter beta-domain SDY_1202 PF03212 Pertactin SDY_1202 PF16168 Adhesin of bacterial autotransporter system, probable stalk SDY_1202 PF03212 Pertactin SDY_1202 PF03797 Autotransporter beta-domain SDY_1203 PF03400 IS1 transposase SDY_1204 PF03212 Pertactin SDY_1204 PF03797 Autotransporter beta-domain SDY_1204 PF16168 Adhesin of bacterial autotransporter system, probable stalk SDY_1205 PF03776 Septum formation topological specificity factor MinE SDY_1206 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SDY_1207 PF03775 Septum formation inhibitor MinC, C-terminal domain SDY_1207 PF05209 Septum formation inhibitor MinC, N-terminal domain SDY_1208 PF03400 IS1 transposase SDY_1209 PF05666 Fels-1 Prophage Protein-like SDY_1210 PF04151 Bacterial pre-peptidase C-terminal domain SDY_1211 PF05166 YcgL domain SDY_1212 PF01557 Fumarylacetoacetate (FAA) hydrolase family SDY_1213 PF03692 Putative zinc- or iron-chelating domain SDY_1214 PF03811 InsA N-terminal domain SDY_1214 PF12759 InsA C-terminal domain SDY_1215 PF03400 IS1 transposase SDY_1216 PF03400 IS1 transposase SDY_1218 PF03400 IS1 transposase SDY_1219 PF06109 Haemolysin E (HlyE) SDY_1220 PF00717 Peptidase S24-like SDY_1221 PF11798 IMS family HHH motif SDY_1221 PF00817 impB/mucB/samB family SDY_1221 PF13438 Domain of unknown function (DUF4113) SDY_1221 PF11799 impB/mucB/samB family C-terminal domain SDY_1222 PF02600 Disulfide bond formation protein DsbB SDY_1223 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SDY_1224 PF00392 Bacterial regulatory proteins, gntR family SDY_1224 PF07840 FadR C-terminal domain SDY_1225 PF04293 SpoVR like protein SDY_1226 PF01266 FAD dependent oxidoreductase SDY_1230 PF02080 TrkA-C domain SDY_1230 PF03471 Transporter associated domain SDY_1230 PF00999 Sodium/hydrogen exchanger family SDY_1231 PF01464 Transglycosylase SLT domain SDY_1232 PF17676 LD-carboxypeptidase C-terminal domain SDY_1232 PF02016 LD-carboxypeptidase N-terminal domain SDY_1233 PF07238 PilZ domain SDY_1233 PF07317 Flagellar regulator YcgR SDY_1234 PF04226 Transglycosylase associated protein SDY_1236 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SDY_1236 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SDY_1238 PF03400 IS1 transposase SDY_1239 PF13649 Methyltransferase domain SDY_1240 PF00005 ABC transporter SDY_1241 PF01032 FecCD transport family SDY_1244 PF03400 IS1 transposase SDY_1246 PF01204 Trehalase SDY_1248 PF02734 DAK2 domain SDY_1249 PF02954 Bacterial regulatory protein, Fis family SDY_1249 PF00158 Sigma-54 interaction domain SDY_1249 PF00989 PAS fold SDY_1251 PF03400 IS1 transposase SDY_1252 PF01926 50S ribosome-binding GTPase SDY_1252 PF06071 Protein of unknown function (DUF933) SDY_1253 PF01195 Peptidyl-tRNA hydrolase SDY_1254 PF10762 Protein of unknown function (DUF2583) SDY_1255 PF00916 Sulfate permease family SDY_1255 PF01740 STAS domain SDY_1256 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SDY_1256 PF14572 Phosphoribosyl synthetase-associated domain SDY_1257 PF08544 GHMP kinases C terminal SDY_1257 PF00288 GHMP kinases N terminal domain SDY_1258 PF03550 Outer membrane lipoprotein LolB SDY_1259 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SDY_1259 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SDY_1259 PF01488 Shikimate / quinate 5-dehydrogenase SDY_1260 PF00472 RF-1 domain SDY_1260 PF03462 PCRF domain SDY_1261 PF13847 Methyltransferase domain SDY_1261 PF17827 PrmC N-terminal domain SDY_1262 PF04247 Invasion gene expression up-regulator, SirB SDY_1263 PF13369 Transglutaminase-like superfamily SDY_1264 PF00793 DAHP synthetase I family SDY_1265 PF13940 Toxin Ldr, type I toxin-antitoxin system SDY_1266 PF01699 Sodium/calcium exchanger protein SDY_1267 PF03811 InsA N-terminal domain SDY_1267 PF12759 InsA C-terminal domain SDY_1269 PF06150 ChaB SDY_1270 PF04752 ChaC-like protein SDY_1271 PF02635 DsrE/DsrF-like family SDY_1273 PF03400 IS1 transposase SDY_1275 PF00072 Response regulator receiver domain SDY_1275 PF00196 Bacterial regulatory proteins, luxR family SDY_1276 PF00672 HAMP domain SDY_1276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_1276 PF07730 Histidine kinase SDY_1276 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SDY_1278 PF07690 Major Facilitator Superfamily SDY_1279 PF01568 Molydopterin dinucleotide binding domain SDY_1279 PF00384 Molybdopterin oxidoreductase SDY_1279 PF14710 Respiratory nitrate reductase alpha N-terminal SDY_1280 PF13247 4Fe-4S dicluster domain SDY_1280 PF14711 Respiratory nitrate reductase beta C-terminal SDY_1281 PF02613 Nitrate reductase delta subunit SDY_1282 PF02665 Nitrate reductase gamma subunit SDY_1284 PF00551 Formyl transferase SDY_1284 PF01842 ACT domain SDY_1285 PF02810 SEC-C motif SDY_1287 PF00072 Response regulator receiver domain SDY_1288 PF00483 Nucleotidyl transferase SDY_1289 PF00816 H-NS histone family SDY_1290 PF00265 Thymidine kinase SDY_1291 PF03400 IS1 transposase SDY_1292 PF13006 Insertion element 4 transposase N-terminal SDY_1292 PF01609 Transposase DDE domain SDY_1293 PF12759 InsA C-terminal domain SDY_1293 PF03811 InsA N-terminal domain SDY_1295 PF00465 Iron-containing alcohol dehydrogenase SDY_1295 PF00171 Aldehyde dehydrogenase family SDY_1296 PF03400 IS1 transposase SDY_1297 PF12759 InsA C-terminal domain SDY_1297 PF03811 InsA N-terminal domain SDY_1298 PF03400 IS1 transposase SDY_1299 PF03400 IS1 transposase SDY_1301 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_1302 PF00528 Binding-protein-dependent transport system inner membrane component SDY_1303 PF00528 Binding-protein-dependent transport system inner membrane component SDY_1303 PF12911 N-terminal TM domain of oligopeptide transport permease C SDY_1304 PF00005 ABC transporter SDY_1304 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_1305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_1305 PF00005 ABC transporter SDY_1306 PF04269 Protein of unknown function, DUF440 SDY_1307 PF13091 PLD-like domain SDY_1307 PF13396 Phospholipase_D-nuclease N-terminal SDY_1308 PF02254 TrkA-N domain SDY_1308 PF07885 Ion channel SDY_1309 PF03795 YCII-related domain SDY_1310 PF01527 Transposase SDY_1311 PF00665 Integrase core domain SDY_1311 PF13276 HTH-like domain SDY_1312 PF00239 Resolvase, N terminal domain SDY_1312 PF02796 Helix-turn-helix domain of resolvase SDY_1313 PF01527 Transposase SDY_1316 PF03544 Gram-negative bacterial TonB protein C-terminal SDY_1317 PF03061 Thioesterase superfamily SDY_1318 PF04279 Intracellular septation protein A SDY_1320 PF03922 OmpW family SDY_1321 PF05974 Domain of unknown function (DUF892) SDY_1323 PF03811 InsA N-terminal domain SDY_1323 PF12759 InsA C-terminal domain SDY_1324 PF03400 IS1 transposase SDY_1326 PF01527 Transposase SDY_1328 PF00290 Tryptophan synthase alpha chain SDY_1329 PF00291 Pyridoxal-phosphate dependent enzyme SDY_1330 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SDY_1330 PF00218 Indole-3-glycerol phosphate synthase SDY_1331 PF02885 Glycosyl transferase family, helical bundle domain SDY_1331 PF00591 Glycosyl transferase family, a/b domain SDY_1331 PF00117 Glutamine amidotransferase class-I SDY_1332 PF04715 Anthranilate synthase component I, N terminal region SDY_1332 PF00425 chorismate binding enzyme SDY_1334 PF02811 PHP domain SDY_1335 PF01300 Telomere recombination SDY_1336 PF12759 InsA C-terminal domain SDY_1336 PF03811 InsA N-terminal domain SDY_1337 PF03400 IS1 transposase SDY_1338 PF09972 Predicted membrane protein (DUF2207) SDY_1339 PF00849 RNA pseudouridylate synthase SDY_1339 PF01479 S4 domain SDY_1340 PF12557 Cob(I)alamin adenosyltransferase N terminal SDY_1340 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SDY_1341 PF00106 short chain dehydrogenase SDY_1342 PF01343 Peptidase family S49 SDY_1342 PF08496 Peptidase family S49 N-terminal SDY_1343 PF10692 Protein of unknown function (DUF2498) SDY_1344 PF01396 Topoisomerase DNA binding C4 zinc finger SDY_1344 PF01751 Toprim domain SDY_1344 PF01131 DNA topoisomerase SDY_1344 PF08272 Topoisomerase I zinc-ribbon-like SDY_1345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1345 PF03466 LysR substrate binding domain SDY_1346 PF03400 IS1 transposase SDY_1347 PF12759 InsA C-terminal domain SDY_1347 PF03811 InsA N-terminal domain SDY_1352 PF01527 Transposase SDY_1353 PF00925 GTP cyclohydrolase II SDY_1354 PF01569 PAP2 superfamily SDY_1355 PF06305 Lipopolysaccharide assembly protein A domain SDY_1356 PF18073 Rubredoxin metal binding domain SDY_1357 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SDY_1358 PF01253 Translation initiation factor SUI1 SDY_1359 PF03400 IS1 transposase SDY_1360 PF12759 InsA C-terminal domain SDY_1360 PF03811 InsA N-terminal domain SDY_1361 PF00455 DeoR C terminal sensor domain SDY_1361 PF08220 DeoR-like helix-turn-helix domain SDY_1364 PF12759 InsA C-terminal domain SDY_1364 PF03811 InsA N-terminal domain SDY_1365 PF03400 IS1 transposase SDY_1366 PF17876 Cold shock domain SDY_1366 PF08206 Ribonuclease B OB domain SDY_1366 PF00773 RNB domain SDY_1366 PF00575 S1 RNA binding domain SDY_1369 PF03400 IS1 transposase SDY_1371 PF03400 IS1 transposase SDY_1372 PF00873 AcrB/AcrD/AcrF family SDY_1375 PF07690 Major Facilitator Superfamily SDY_1376 PF01548 Transposase SDY_1376 PF02371 Transposase IS116/IS110/IS902 family SDY_1377 PF00005 ABC transporter SDY_1378 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_1378 PF00005 ABC transporter SDY_1379 PF00528 Binding-protein-dependent transport system inner membrane component SDY_1379 PF12911 N-terminal TM domain of oligopeptide transport permease C SDY_1381 PF03811 InsA N-terminal domain SDY_1381 PF12759 InsA C-terminal domain SDY_1385 PF06630 Enterobacterial exodeoxyribonuclease VIII SDY_1385 PF12684 PDDEXK-like domain of unknown function (DUF3799) SDY_1386 PF01527 Transposase SDY_1389 PF00161 Ribosome inactivating protein SDY_1390 PF02258 Shiga-like toxin beta subunit SDY_1391 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SDY_1393 PF04971 Bacteriophage P21 holin S SDY_1394 PF00959 Phage lysozyme SDY_1395 PF00665 Integrase core domain SDY_1396 PF12759 InsA C-terminal domain SDY_1396 PF03811 InsA N-terminal domain SDY_1397 PF03400 IS1 transposase SDY_1398 PF00356 Bacterial regulatory proteins, lacI family SDY_1398 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_1399 PF04317 YcjX-like family, DUF463 SDY_1400 PF05128 Domain of unknown function (DUF697) SDY_1401 PF18024 Helix-turn-helix domain SDY_1401 PF13188 PAS domain SDY_1401 PF00158 Sigma-54 interaction domain SDY_1402 PF08534 Redoxin SDY_1403 PF13378 Enolase C-terminal domain-like SDY_1403 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SDY_1404 PF00246 Zinc carboxypeptidase SDY_1405 PF03400 IS1 transposase SDY_1407 PF03400 IS1 transposase SDY_1408 PF03466 LysR substrate binding domain SDY_1408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1409 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_1410 PF00924 Mechanosensitive ion channel SDY_1411 PF03400 IS1 transposase SDY_1412 PF12759 InsA C-terminal domain SDY_1412 PF03811 InsA N-terminal domain SDY_1413 PF00582 Universal stress protein family SDY_1414 PF03400 IS1 transposase SDY_1415 PF00027 Cyclic nucleotide-binding domain SDY_1415 PF00325 Bacterial regulatory proteins, crp family SDY_1416 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SDY_1416 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SDY_1418 PF03400 IS1 transposase SDY_1419 PF01713 Smr domain SDY_1420 PF00990 Diguanylate cyclase, GGDEF domain SDY_1420 PF08448 PAS fold SDY_1421 PF01527 Transposase SDY_1422 PF13276 HTH-like domain SDY_1422 PF13333 Integrase core domain SDY_1422 PF00665 Integrase core domain SDY_1423 PF08448 PAS fold SDY_1423 PF00990 Diguanylate cyclase, GGDEF domain SDY_1424 PF01544 CorA-like Mg2+ transporter protein SDY_1426 PF01171 PP-loop family SDY_1427 PF12167 Arm DNA-binding domain SDY_1427 PF00589 Phage integrase family SDY_1429 PF03400 IS1 transposase SDY_1430 PF03811 InsA N-terminal domain SDY_1430 PF12759 InsA C-terminal domain SDY_1431 PF03400 IS1 transposase SDY_1432 PF01848 Hok/gef family SDY_1434 PF06147 Protein of unknown function (DUF968) SDY_1435 PF05866 Endodeoxyribonuclease RusA SDY_1436 PF03589 Antitermination protein SDY_1439 PF03811 InsA N-terminal domain SDY_1439 PF12759 InsA C-terminal domain SDY_1440 PF03400 IS1 transposase SDY_1442 PF03400 IS1 transposase SDY_1444 PF01527 Transposase SDY_1446 PF03400 IS1 transposase SDY_1449 PF01527 Transposase SDY_1450 PF13276 HTH-like domain SDY_1450 PF00665 Integrase core domain SDY_1450a PF04971 Bacteriophage P21 holin S SDY_1451a PF07041 Protein of unknown function (DUF1327) SDY_1452 PF01527 Transposase SDY_1454 PF00950 ABC 3 transport family SDY_1455 PF00950 ABC 3 transport family SDY_1456 PF00005 ABC transporter SDY_1457 PF01297 Zinc-uptake complex component A periplasmic SDY_1458 PF00582 Universal stress protein family SDY_1460 PF13333 Integrase core domain SDY_1460 PF00665 Integrase core domain SDY_1460 PF13276 HTH-like domain SDY_1461 PF10371 Domain of unknown function SDY_1461 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SDY_1461 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_1461 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SDY_1461 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SDY_1462 PF03891 Domain of unknown function (DUF333) SDY_1464 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDY_1464 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SDY_1465 PF11739 Dicarboxylate transport SDY_1466 PF13617 YnbE-like lipoprotein SDY_1468 PF03400 IS1 transposase SDY_1469 PF03811 InsA N-terminal domain SDY_1469 PF12759 InsA C-terminal domain SDY_1470 PF03400 IS1 transposase SDY_1471 PF10971 Protein of unknown function (DUF2773) SDY_1472 PF01066 CDP-alcohol phosphatidyltransferase SDY_1473 PF03400 IS1 transposase SDY_1474 PF01487 Type I 3-dehydroquinase SDY_1475 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SDY_1475 PF08501 Shikimate dehydrogenase substrate binding domain SDY_1476 PF03400 IS1 transposase SDY_1477 PF07690 Major Facilitator Superfamily SDY_1478 PF03400 IS1 transposase SDY_1479 PF12759 InsA C-terminal domain SDY_1479 PF03811 InsA N-terminal domain SDY_1481 PF01527 Transposase SDY_1482 PF12759 InsA C-terminal domain SDY_1482 PF03811 InsA N-terminal domain SDY_1483 PF07690 Major Facilitator Superfamily SDY_1484 PF03400 IS1 transposase SDY_1485 PF06629 MltA-interacting protein MipA SDY_1486 PF00248 Aldo/keto reductase family SDY_1487 PF01263 Aldose 1-epimerase SDY_1488 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SDY_1488 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SDY_1489 PF01641 SelR domain SDY_1490 PF07023 Protein of unknown function (DUF1315) SDY_1491 PF08240 Alcohol dehydrogenase GroES-like domain SDY_1491 PF00107 Zinc-binding dehydrogenase SDY_1492 PF00083 Sugar (and other) transporter SDY_1493 PF00107 Zinc-binding dehydrogenase SDY_1493 PF08240 Alcohol dehydrogenase GroES-like domain SDY_1494 PF12759 InsA C-terminal domain SDY_1494 PF03811 InsA N-terminal domain SDY_1495 PF00294 pfkB family carbohydrate kinase SDY_1498 PF08220 DeoR-like helix-turn-helix domain SDY_1498 PF00455 DeoR C terminal sensor domain SDY_1499 PF00083 Sugar (and other) transporter SDY_1501 PF12759 InsA C-terminal domain SDY_1501 PF03811 InsA N-terminal domain SDY_1502 PF03400 IS1 transposase SDY_1503 PF03400 IS1 transposase SDY_1505 PF00857 Isochorismatase family SDY_1506 PF17763 Glutaminase/Asparaginase C-terminal domain SDY_1506 PF00710 Asparaginase, N-terminal SDY_1507 PF01343 Peptidase family S49 SDY_1508 PF00881 Nitroreductase family SDY_1509 PF00586 AIR synthase related protein, N-terminal domain SDY_1509 PF02769 AIR synthase related protein, C-terminal domain SDY_1510 PF01131 DNA topoisomerase SDY_1510 PF01751 Toprim domain SDY_1512 PF03400 IS1 transposase SDY_1513 PF06889 Protein of unknown function (DUF1266) SDY_1514 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SDY_1514 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SDY_1515 PF07383 Protein of unknown function (DUF1496) SDY_1516 PF00293 NUDIX domain SDY_1519 PF00005 ABC transporter SDY_1523 PF02627 Carboxymuconolactone decarboxylase family SDY_1524 PF09335 SNARE associated Golgi protein SDY_1526 PF09335 SNARE associated Golgi protein SDY_1527 PF03372 Endonuclease/Exonuclease/phosphatase family SDY_1529 PF12759 InsA C-terminal domain SDY_1529 PF03811 InsA N-terminal domain SDY_1530 PF04958 Arginine N-succinyltransferase beta subunit SDY_1531 PF00171 Aldehyde dehydrogenase family SDY_1532 PF04996 Succinylarginine dihydrolase SDY_1534 PF07813 LTXXQ motif family protein SDY_1535 PF05962 HutD SDY_1540 PF02540 NAD synthase SDY_1541 PF04355 SmpA / OmlA family SDY_1542 PF03400 IS1 transposase SDY_1544 PF03811 InsA N-terminal domain SDY_1544 PF12759 InsA C-terminal domain SDY_1545 PF03400 IS1 transposase SDY_1546 PF06942 GlpM protein SDY_1548 PF13520 Amino acid permease SDY_1549 PF07338 Protein of unknown function (DUF1471) SDY_1550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SDY_1550 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SDY_1550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SDY_1551 PF02233 NAD(P) transhydrogenase beta subunit SDY_1552 PF01594 AI-2E family transporter SDY_1553 PF00893 Small Multidrug Resistance protein SDY_1554 PF00893 Small Multidrug Resistance protein SDY_1555 PF00089 Trypsin SDY_1560 PF03400 IS1 transposase SDY_1561 PF03466 LysR substrate binding domain SDY_1561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1562 PF00480 ROK family SDY_1564 PF00654 Voltage gated chloride channel SDY_1566 PF04976 DMSO reductase anchor subunit (DmsC) SDY_1567 PF12800 4Fe-4S binding domain SDY_1567 PF13247 4Fe-4S dicluster domain SDY_1570 PF06649 Protein of unknown function (DUF1161) SDY_1571 PF06788 Uncharacterised protein family (UPF0257) SDY_1574 PF03400 IS1 transposase SDY_1575 PF13302 Acetyltransferase (GNAT) domain SDY_1576 PF06932 Protein of unknown function (DUF1283) SDY_1577 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SDY_1580 PF03400 IS1 transposase SDY_1582 PF07690 Major Facilitator Superfamily SDY_1582 PF00083 Sugar (and other) transporter SDY_1584 PF14001 YdfZ protein SDY_1585 PF00392 Bacterial regulatory proteins, gntR family SDY_1585 PF07729 FCD domain SDY_1586 PF00106 short chain dehydrogenase SDY_1587 PF01432 Peptidase family M3 SDY_1588 PF02464 Competence-damaged protein SDY_1589 PF04076 Bacterial OB fold (BOF) protein SDY_1590 PF00990 Diguanylate cyclase, GGDEF domain SDY_1591 PF12759 InsA C-terminal domain SDY_1591 PF03811 InsA N-terminal domain SDY_1592 PF03400 IS1 transposase SDY_1593 PF07690 Major Facilitator Superfamily SDY_1594 PF00892 EamA-like transporter family SDY_1596 PF12833 Helix-turn-helix domain SDY_1597 PF01047 MarR family SDY_1598 PF01914 MarC family integral membrane protein SDY_1599 PF07690 Major Facilitator Superfamily SDY_1601 PF03400 IS1 transposase SDY_1603 PF00892 EamA-like transporter family SDY_1605 PF12800 4Fe-4S binding domain SDY_1605 PF09163 Formate dehydrogenase N, transmembrane SDY_1605 PF13247 4Fe-4S dicluster domain SDY_1606 PF01292 Prokaryotic cytochrome b561 SDY_1607 PF01381 Helix-turn-helix SDY_1608 PF00107 Zinc-binding dehydrogenase SDY_1608 PF08240 Alcohol dehydrogenase GroES-like domain SDY_1610 PF02566 OsmC-like protein SDY_1611 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_1611 PF00005 ABC transporter SDY_1613 PF02638 Glycosyl hydrolase-like 10 SDY_1614 PF13520 Amino acid permease SDY_1615 PF00282 Pyridoxal-dependent decarboxylase conserved domain SDY_1618 PF13018 Extended Signal Peptide of Type V secretion system SDY_1620 PF12759 InsA C-terminal domain SDY_1620 PF03811 InsA N-terminal domain SDY_1623 PF01791 DeoC/LacD family aldolase SDY_1624 PF03992 Antibiotic biosynthesis monooxygenase SDY_1629 PF00990 Diguanylate cyclase, GGDEF domain SDY_1630 PF13811 Domain of unknown function (DUF4186) SDY_1631 PF04960 Glutaminase SDY_1632 PF00171 Aldehyde dehydrogenase family SDY_1633 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1633 PF03466 LysR substrate binding domain SDY_1635 PF03400 IS1 transposase SDY_1636 PF00324 Amino acid permease SDY_1637 PF10820 Protein of unknown function (DUF2543) SDY_1638 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_1639 PF00528 Binding-protein-dependent transport system inner membrane component SDY_1644 PF01527 Transposase SDY_1645 PF00665 Integrase core domain SDY_1645 PF13276 HTH-like domain SDY_1646 PF01527 Transposase SDY_1647 PF07690 Major Facilitator Superfamily SDY_1651 PF14711 Respiratory nitrate reductase beta C-terminal SDY_1651 PF13247 4Fe-4S dicluster domain SDY_1652 PF02613 Nitrate reductase delta subunit SDY_1653 PF02665 Nitrate reductase gamma subunit SDY_1654 PF02567 Phenazine biosynthesis-like protein SDY_1655 PF00797 N-acetyltransferase SDY_1657 PF09160 FimH, mannose binding SDY_1658 PF00384 Molybdopterin oxidoreductase SDY_1659 PF17073 Two-component-system connector protein SDY_1660 PF12833 Helix-turn-helix domain SDY_1661 PF00884 Sulfatase SDY_1662 PF03400 IS1 transposase SDY_1663 PF00267 Gram-negative porin SDY_1667 PF03400 IS1 transposase SDY_1672 PF01527 Transposase SDY_1673 PF15930 Domain of unknown function SDY_1674 PF03061 Thioesterase superfamily SDY_1675 PF02913 FAD linked oxidases, C-terminal domain SDY_1675 PF01565 FAD binding domain SDY_1675 PF13183 4Fe-4S dicluster domain SDY_1676 PF01594 AI-2E family transporter SDY_1678 PF01527 Transposase SDY_1679 PF08965 Domain of unknown function (DUF1870) SDY_1680 PF03400 IS1 transposase SDY_1682 PF07690 Major Facilitator Superfamily SDY_1684 PF00990 Diguanylate cyclase, GGDEF domain SDY_1684 PF17155 Gammaproteobacterial periplasmic sensor domain SDY_1685 PF04073 Aminoacyl-tRNA editing domain SDY_1687 PF04284 Protein of unknown function (DUF441) SDY_1688 PF02311 AraC-like ligand binding domain SDY_1688 PF12833 Helix-turn-helix domain SDY_1689 PF07690 Major Facilitator Superfamily SDY_1690 PF04343 Protein of unknown function, DUF488 SDY_1691 PF03891 Domain of unknown function (DUF333) SDY_1692 PF00990 Diguanylate cyclase, GGDEF domain SDY_1692 PF13185 GAF domain SDY_1693 PF03400 IS1 transposase SDY_1695 PF04226 Transglycosylase associated protein SDY_1696 PF08956 Domain of unknown function (DUF1869) SDY_1697 PF09313 Domain of unknown function (DUF1971) SDY_1698 PF01810 LysE type translocator SDY_1699 PF03400 IS1 transposase SDY_1700 PF03466 LysR substrate binding domain SDY_1700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1701 PF00180 Isocitrate/isopropylmalate dehydrogenase SDY_1704 PF03400 IS1 transposase SDY_1706 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SDY_1706 PF00355 Rieske [2Fe-2S] domain SDY_1707 PF00970 Oxidoreductase FAD-binding domain SDY_1707 PF00111 2Fe-2S iron-sulfur cluster binding domain SDY_1707 PF00175 Oxidoreductase NAD-binding domain SDY_1708 PF00570 HRDC domain SDY_1708 PF01612 3'-5' exonuclease SDY_1709 PF13193 AMP-binding enzyme C-terminal domain SDY_1709 PF00501 AMP-binding enzyme SDY_1710 PF03843 Outer membrane lipoprotein Slp family SDY_1711 PF00814 Glycoprotease family SDY_1712 PF04851 Type III restriction enzyme, res subunit SDY_1712 PF13307 Helicase C-terminal domain SDY_1713 PF01042 Endoribonuclease L-PSP SDY_1714 PF12759 InsA C-terminal domain SDY_1714 PF03811 InsA N-terminal domain SDY_1715 PF03400 IS1 transposase SDY_1717 PF03701 Uncharacterised protein family (UPF0181) SDY_1718 PF04715 Anthranilate synthase component I, N terminal region SDY_1718 PF00425 chorismate binding enzyme SDY_1719 PF00293 NUDIX domain SDY_1720 PF03313 Serine dehydratase alpha chain SDY_1720 PF03315 Serine dehydratase beta chain SDY_1721 PF12759 InsA C-terminal domain SDY_1721 PF03811 InsA N-terminal domain SDY_1722 PF03400 IS1 transposase SDY_1723 PF07729 FCD domain SDY_1723 PF00392 Bacterial regulatory proteins, gntR family SDY_1724 PF16884 N-terminal domain of oxidoreductase SDY_1724 PF00107 Zinc-binding dehydrogenase SDY_1725 PF00583 Acetyltransferase (GNAT) family SDY_1726 PF04657 Putative inner membrane exporter, YdcZ SDY_1727 PF03400 IS1 transposase SDY_1729 PF10753 Toxin GhoT_OrtT SDY_1730 PF00171 Aldehyde dehydrogenase family SDY_1733 PF08402 TOBE domain SDY_1733 PF00005 ABC transporter SDY_1734 PF13416 Bacterial extracellular solute-binding protein SDY_1735 PF00155 Aminotransferase class I and II SDY_1735 PF00392 Bacterial regulatory proteins, gntR family SDY_1736 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SDY_1736 PF01381 Helix-turn-helix SDY_1738 PF03400 IS1 transposase SDY_1740 PF12392 Collagenase SDY_1740 PF01136 Peptidase family U32 SDY_1742 PF07883 Cupin domain SDY_1742 PF01381 Helix-turn-helix SDY_1744 PF03400 IS1 transposase SDY_1745 PF12759 InsA C-terminal domain SDY_1745 PF03811 InsA N-terminal domain SDY_1746 PF11769 Protein of unknown function (DUF3313) SDY_1747 PF03848 Tellurite resistance protein TehB SDY_1748 PF03595 Voltage-dependent anion channel SDY_1751 PF13302 Acetyltransferase (GNAT) domain SDY_1752 PF04325 Protein of unknown function (DUF465) SDY_1753 PF12759 InsA C-terminal domain SDY_1753 PF03811 InsA N-terminal domain SDY_1754 PF03400 IS1 transposase SDY_1756 PF04349 Periplasmic glucan biosynthesis protein, MdoG SDY_1757 PF07063 Domain of unknown function (DUF1338) SDY_1758 PF03466 LysR substrate binding domain SDY_1758 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1759 PF03400 IS1 transposase SDY_1760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SDY_1760 PF00672 HAMP domain SDY_1760 PF02203 Tar ligand binding domain homologue SDY_1761 PF03400 IS1 transposase SDY_1764 PF01292 Prokaryotic cytochrome b561 SDY_1768 PF01527 Transposase SDY_1769 PF03400 IS1 transposase SDY_1771 PF12759 InsA C-terminal domain SDY_1771 PF03811 InsA N-terminal domain SDY_1772 PF03400 IS1 transposase SDY_1774 PF00270 DEAD/DEAH box helicase SDY_1774 PF04408 Helicase associated domain (HA2) SDY_1774 PF00271 Helicase conserved C-terminal domain SDY_1774 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SDY_1774 PF11898 Domain of unknown function (DUF3418) SDY_1775 PF02525 Flavodoxin-like fold SDY_1776 PF00782 Dual specificity phosphatase, catalytic domain SDY_1778 PF03400 IS1 transposase SDY_1779 PF12146 Serine aminopeptidase, S33 SDY_1779 PF12147 Putative methyltransferase SDY_1783 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SDY_1783 PF02770 Acyl-CoA dehydrogenase, middle domain SDY_1783 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SDY_1784 PF13276 HTH-like domain SDY_1784 PF13333 Integrase core domain SDY_1784 PF00665 Integrase core domain SDY_1785 PF01527 Transposase SDY_1786 PF02311 AraC-like ligand binding domain SDY_1786 PF12833 Helix-turn-helix domain SDY_1789 PF01527 Transposase SDY_1791 PF01494 FAD binding domain SDY_1794 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SDY_1794 PF00391 PEP-utilising enzyme, mobile domain SDY_1794 PF02896 PEP-utilising enzyme, TIM barrel domain SDY_1795 PF01527 Transposase SDY_1797 PF03618 Kinase/pyrophosphorylase SDY_1798 PF00793 DAHP synthetase I family SDY_1799 PF10636 Hemin uptake protein hemP SDY_1802 PF00563 EAL domain SDY_1803 PF00877 NlpC/P60 family SDY_1804 PF00005 ABC transporter SDY_1805 PF00255 Glutathione peroxidase SDY_1806 PF01032 FecCD transport family SDY_1807 PF00216 Bacterial DNA-binding protein SDY_1808 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SDY_1808 PF03484 tRNA synthetase B5 domain SDY_1808 PF03147 Ferredoxin-fold anticodon binding domain SDY_1808 PF01588 Putative tRNA binding domain SDY_1808 PF03483 B3/4 domain SDY_1809 PF01409 tRNA synthetases class II core domain (F) SDY_1809 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SDY_1811 PF00453 Ribosomal protein L20 SDY_1812 PF01632 Ribosomal protein L35 SDY_1813 PF00707 Translation initiation factor IF-3, C-terminal domain SDY_1813 PF05198 Translation initiation factor IF-3, N-terminal domain SDY_1814 PF03129 Anticodon binding domain SDY_1814 PF02824 TGS domain SDY_1814 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDY_1814 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SDY_1815 PF03400 IS1 transposase SDY_1816 PF00294 pfkB family carbohydrate kinase SDY_1817 PF11080 Endoribonuclease GhoS SDY_1818 PF03881 Fructosamine kinase SDY_1819 PF14002 YniB-like protein SDY_1820 PF13419 Haloacid dehalogenase-like hydrolase SDY_1821 PF04307 LexA-binding, inner membrane-associated putative hydrolase SDY_1822 PF03400 IS1 transposase SDY_1823 PF03811 InsA N-terminal domain SDY_1823 PF12759 InsA C-terminal domain SDY_1824 PF00072 Response regulator receiver domain SDY_1824 PF00486 Transcriptional regulatory protein, C terminal SDY_1825 PF00512 His Kinase A (phospho-acceptor) domain SDY_1825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_1825 PF00672 HAMP domain SDY_1826 PF05472 DNA replication terminus site-binding protein (Ter protein) SDY_1827 PF10415 Fumarase C C-terminus SDY_1827 PF00206 Lyase SDY_1828 PF05681 Fumarate hydratase (Fumerase) SDY_1828 PF05683 Fumarase C-terminus SDY_1829 PF01238 Phosphomannose isomerase type I SDY_1830 PF06097 Bacterial protein of unknown function (DUF945) SDY_1832 PF03400 IS1 transposase SDY_1837 PF00440 Bacterial regulatory proteins, tetR family SDY_1841 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_1841 PF00356 Bacterial regulatory proteins, lacI family SDY_1842 PF00367 phosphotransferase system, EIIB SDY_1842 PF02378 Phosphotransferase system, EIIC SDY_1843 PF03400 IS1 transposase SDY_1845 PF00155 Aminotransferase class I and II SDY_1846 PF00962 Adenosine/AMP deaminase SDY_1847 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDY_1847 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDY_1848 PF05321 Haemolysin expression modulating protein SDY_1850 PF02508 Rnf-Nqr subunit, membrane protein SDY_1851 PF04060 Putative Fe-S cluster SDY_1852 PF10531 SLBB domain SDY_1852 PF13375 RnfC Barrel sandwich hybrid domain SDY_1852 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SDY_1852 PF12838 4Fe-4S dicluster domain SDY_1853 PF03116 NQR2, RnfD, RnfE family SDY_1854 PF04205 FMN-binding domain SDY_1855 PF02508 Rnf-Nqr subunit, membrane protein SDY_1856 PF00730 HhH-GPD superfamily base excision DNA repair protein SDY_1856 PF00633 Helix-hairpin-helix motif SDY_1856 PF10576 Iron-sulfur binding domain of endonuclease III SDY_1857 PF00854 POT family SDY_1858 PF00043 Glutathione S-transferase, C-terminal domain SDY_1858 PF02798 Glutathione S-transferase, N-terminal domain SDY_1859 PF08543 Phosphomethylpyrimidine kinase SDY_1860 PF00579 tRNA synthetases class I (W and Y) SDY_1860 PF01479 S4 domain SDY_1861 PF01243 Pyridoxamine 5'-phosphate oxidase SDY_1861 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SDY_1862 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SDY_1863 PF03702 Anhydro-N-acetylmuramic acid kinase SDY_1864 PF05433 Glycine zipper 2TM domain SDY_1865 PF01047 MarR family SDY_1866 PF07869 Protein of unknown function (DUF1656) SDY_1867 PF00529 HlyD membrane-fusion protein of T1SS SDY_1867 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_1870 PF00080 Copper/zinc superoxide dismutase (SODC) SDY_1871 PF00248 Aldo/keto reductase family SDY_1872 PF16925 Tetracyclin repressor-like, C-terminal domain SDY_1872 PF00440 Bacterial regulatory proteins, tetR family SDY_1873 PF06945 Protein of unknown function (DUF1289) SDY_1874 PF03400 IS1 transposase SDY_1877 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SDY_1878 PF00929 Exonuclease SDY_1880 PF00462 Glutaredoxin SDY_1881 PF00877 NlpC/P60 family SDY_1882 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SDY_1882 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SDY_1883 PF07690 Major Facilitator Superfamily SDY_1884 PF00356 Bacterial regulatory proteins, lacI family SDY_1885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_1885 PF03466 LysR substrate binding domain SDY_1886 PF07690 Major Facilitator Superfamily SDY_1888 PF00677 Lumazine binding domain SDY_1889 PF03400 IS1 transposase SDY_1890 PF01554 MatE SDY_1891 PF16168 Adhesin of bacterial autotransporter system, probable stalk SDY_1891 PF03212 Pertactin SDY_1894 PF00665 Integrase core domain SDY_1894 PF13333 Integrase core domain SDY_1894 PF13276 HTH-like domain SDY_1895 PF01527 Transposase SDY_1898 PF01292 Prokaryotic cytochrome b561 SDY_1899 PF13247 4Fe-4S dicluster domain SDY_1901 PF01527 Transposase SDY_1904 PF10965 Protein of unknown function (DUF2767) SDY_1905 PF00224 Pyruvate kinase, barrel domain SDY_1905 PF02887 Pyruvate kinase, alpha/beta domain SDY_1906 PF03811 InsA N-terminal domain SDY_1906 PF12759 InsA C-terminal domain SDY_1908 PF04728 Lipoprotein leucine-zipper SDY_1909 PF03734 L,D-transpeptidase catalytic domain SDY_1909 PF01476 LysM domain SDY_1909 PF17969 L,D-transpeptidase C-terminal domain SDY_1910 PF02657 Fe-S metabolism associated domain SDY_1912 PF01458 Uncharacterized protein family (UPF0051) SDY_1913 PF00005 ABC transporter SDY_1916 PF02796 Helix-turn-helix domain of resolvase SDY_1916 PF00239 Resolvase, N terminal domain SDY_1918 PF13276 HTH-like domain SDY_1918 PF00665 Integrase core domain SDY_1918 PF13333 Integrase core domain SDY_1919 PF03400 IS1 transposase SDY_1920 PF01527 Transposase SDY_1926 PF07669 Eco57I restriction-modification methylase SDY_1927 PF06616 BsuBI/PstI restriction endonuclease domain SDY_1927 PF17728 BsuBI/PstI restriction endonuclease HTH domain SDY_1928 PF09669 Phage regulatory protein Rha (Phage_pRha) SDY_1928 PF10549 ORF11CD3 domain SDY_1932 PF01527 Transposase SDY_1934 PF12759 InsA C-terminal domain SDY_1934 PF03811 InsA N-terminal domain SDY_1934a PF03400 IS1 transposase SDY_1936 PF00581 Rhodanese-like domain SDY_1937 PF09584 Phage shock protein PspD (Phageshock_PspD) SDY_1938 PF04024 PspC domain SDY_1939 PF06667 Phage shock protein B SDY_1940 PF04012 PspA/IM30 family SDY_1941 PF02954 Bacterial regulatory protein, Fis family SDY_1941 PF00158 Sigma-54 interaction domain SDY_1943 PF01266 FAD dependent oxidoreductase SDY_1945 PF01381 Helix-turn-helix SDY_1945 PF07883 Cupin domain SDY_1948 PF00324 Amino acid permease SDY_1949 PF03400 IS1 transposase SDY_1950 PF17520 Family of unknown function (DUF5445) SDY_1951 PF13417 Glutathione S-transferase, N-terminal domain SDY_1952 PF00324 Amino acid permease SDY_1954 PF07715 TonB-dependent Receptor Plug Domain SDY_1954 PF00593 TonB dependent receptor SDY_1956 PF03400 IS1 transposase SDY_1957 PF00392 Bacterial regulatory proteins, gntR family SDY_1957 PF07729 FCD domain SDY_1958 PF03811 InsA N-terminal domain SDY_1958 PF12759 InsA C-terminal domain SDY_1959 PF03400 IS1 transposase SDY_1962 PF03471 Transporter associated domain SDY_1962 PF03741 Integral membrane protein TerC family SDY_1963 PF03610 PTS system fructose IIA component SDY_1963 PF03830 PTS system sorbose subfamily IIB component SDY_1965 PF03613 PTS system mannose/fructose/sorbose family IID component SDY_1966 PF06173 Protein of unknown function (DUF986) SDY_1967 PF02659 Putative manganese efflux pump SDY_1968 PF13847 Methyltransferase domain SDY_1969 PF00313 'Cold-shock' DNA-binding domain SDY_1970 PF10736 Protein of unknown function (DUF2627) SDY_1971 PF03400 IS1 transposase SDY_1972 PF13974 YebO-like protein SDY_1973 PF13998 MgrB protein SDY_1974 PF13996 YobH-like protein SDY_1975 PF01614 Bacterial transcriptional regulator SDY_1975 PF09339 IclR helix-turn-helix domain SDY_1976 PF07690 Major Facilitator Superfamily SDY_1977 PF01435 Peptidase family M48 SDY_1978 PF17804 Tail specific protease N-terminal domain SDY_1978 PF03572 Peptidase family S41 SDY_1978 PF00595 PDZ domain SDY_1978 PF11818 C-terminal domain of tail specific protease (DUF3340) SDY_1979 PF04352 ProQ/FINO family SDY_1979 PF17516 ProQ C-terminal domain SDY_1980 PF13185 GAF domain SDY_1981 PF04403 Paraquat-inducible protein A SDY_1982 PF04403 Paraquat-inducible protein A SDY_1983 PF03400 IS1 transposase SDY_1984 PF04403 Paraquat-inducible protein A SDY_1985 PF02470 MlaD protein SDY_1986 PF01189 16S rRNA methyltransferase RsmB/F SDY_1986 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF SDY_1986 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF SDY_1987 PF07351 Protein of unknown function (DUF1480) SDY_1988 PF07358 Protein of unknown function (DUF1482) SDY_1989 PF00149 Calcineurin-like phosphoesterase SDY_1991 PF01527 Transposase SDY_1992 PF00665 Integrase core domain SDY_1998 PF04971 Bacteriophage P21 holin S SDY_1999 PF01527 Transposase SDY_2001 PF14496 C-terminal novel E3 ligase, LRR-interacting SDY_2001 PF12468 Type III secretion system leucine rich repeat protein SDY_2002 PF03400 IS1 transposase SDY_2003 PF14496 C-terminal novel E3 ligase, LRR-interacting SDY_2003 PF12468 Type III secretion system leucine rich repeat protein SDY_2004 PF00665 Integrase core domain SDY_2004 PF13333 Integrase core domain SDY_2004 PF13276 HTH-like domain SDY_2007 PF03400 IS1 transposase SDY_2008 PF01527 Transposase SDY_2011 PF10282 Lactonase, 7-bladed beta-propeller SDY_2012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2012 PF03466 LysR substrate binding domain SDY_2013 PF03400 IS1 transposase SDY_2016 PF00180 Isocitrate/isopropylmalate dehydrogenase SDY_2017 PF00849 RNA pseudouridylate synthase SDY_2018 PF00293 NUDIX domain SDY_2020 PF04356 Protein of unknown function (DUF489) SDY_2021 PF00206 Lyase SDY_2021 PF08328 Adenylosuccinate lyase C-terminal SDY_2022 PF00486 Transcriptional regulatory protein, C terminal SDY_2022 PF00072 Response regulator receiver domain SDY_2023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_2023 PF08918 PhoQ Sensor SDY_2024 PF08007 Cupin superfamily protein SDY_2025 PF07687 Peptidase dimerisation domain SDY_2025 PF01546 Peptidase family M20/M25/M40 SDY_2026 PF00005 ABC transporter SDY_2026 PF08402 TOBE domain SDY_2027 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2028 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2029 PF13416 Bacterial extracellular solute-binding protein SDY_2030 PF02146 Sir2 family SDY_2031 PF00480 ROK family SDY_2032 PF02687 FtsX-like permease family SDY_2032 PF12704 MacB-like periplasmic core domain SDY_2033 PF00005 ABC transporter SDY_2034 PF02687 FtsX-like permease family SDY_2034 PF12704 MacB-like periplasmic core domain SDY_2035 PF01757 Acyltransferase family SDY_2036 PF02559 CarD-like/TRCF domain SDY_2036 PF17757 UvrB interaction domain SDY_2036 PF00270 DEAD/DEAH box helicase SDY_2036 PF03461 TRCF domain SDY_2036 PF00271 Helicase conserved C-terminal domain SDY_2037 PF17969 L,D-transpeptidase C-terminal domain SDY_2037 PF01476 LysM domain SDY_2037 PF03734 L,D-transpeptidase catalytic domain SDY_2038 PF07338 Protein of unknown function (DUF1471) SDY_2039 PF00440 Bacterial regulatory proteins, tetR family SDY_2040 PF05433 Glycine zipper 2TM domain SDY_2041 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_2042 PF05728 Uncharacterised protein family (UPF0227) SDY_2043 PF00933 Glycosyl hydrolase family 3 N terminal domain SDY_2044 PF01636 Phosphotransferase enzyme family SDY_2045 PF13036 Peptidoglycan-synthase activator LpoB SDY_2046 PF07233 Protein of unknown function (DUF1425) SDY_2047 PF01230 HIT domain SDY_2048 PF07715 TonB-dependent Receptor Plug Domain SDY_2048 PF00593 TonB dependent receptor SDY_2049 PF00367 phosphotransferase system, EIIB SDY_2049 PF02378 Phosphotransferase system, EIIC SDY_2050 PF01026 TatD related DNase SDY_2051 PF09115 DNA polymerase III, delta subunit, C terminal SDY_2052 PF02223 Thymidylate kinase SDY_2053 PF02618 YceG-like family SDY_2054 PF01063 Amino-transferase class IV SDY_2055 PF02801 Beta-ketoacyl synthase, C-terminal domain SDY_2055 PF00109 Beta-ketoacyl synthase, N-terminal domain SDY_2056 PF00550 Phosphopantetheine attachment site SDY_2058 PF00698 Acyl transferase domain SDY_2059 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SDY_2059 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SDY_2060 PF02504 Fatty acid synthesis protein SDY_2061 PF01783 Ribosomal L32p protein family SDY_2062 PF02620 Large ribosomal RNA subunit accumulation protein YceD SDY_2063 PF03400 IS1 transposase SDY_2065 PF01479 S4 domain SDY_2065 PF00849 RNA pseudouridylate synthase SDY_2067 PF12111 Polyribonucleotide phosphorylase C terminal SDY_2067 PF10150 Ribonuclease E/G family SDY_2067 PF00575 S1 RNA binding domain SDY_2070 PF10135 Rod binding protein SDY_2070 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDY_2071 PF02119 Flagellar P-ring protein SDY_2072 PF02107 Flagellar L-ring protein SDY_2075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SDY_2075 PF07559 Flagellar basal body protein FlaE SDY_2075 PF00460 Flagella basal body rod protein SDY_2076 PF13860 FlgD Ig-like domain SDY_2076 PF13861 FlgD Tudor-like domain SDY_2076 PF03963 Flagellar hook capping protein - N-terminal region SDY_2077 PF00460 Flagella basal body rod protein SDY_2077 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SDY_2078 PF00460 Flagella basal body rod protein SDY_2079 PF03400 IS1 transposase SDY_2080 PF13144 Chaperone for flagella basal body P-ring formation SDY_2081 PF04316 Anti-sigma-28 factor, FlgM SDY_2083 PF03023 Lipid II flippase MurJ SDY_2084 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDY_2085 PF04337 Protein of unknown function, DUF480 SDY_2086 PF13302 Acetyltransferase (GNAT) domain SDY_2087 PF03400 IS1 transposase SDY_2089 PF04399 Glutaredoxin 2, C terminal domain SDY_2089 PF13417 Glutathione S-transferase, N-terminal domain SDY_2090 PF07273 Protein of unknown function (DUF1439) SDY_2091 PF01979 Amidohydrolase family SDY_2092 PF06183 DinI-like family SDY_2093 PF03400 IS1 transposase SDY_2095 PF13991 BssS protein family SDY_2096 PF01266 FAD dependent oxidoreductase SDY_2097 PF10968 Protein of unknown function (DUF2770) SDY_2098 PF03400 IS1 transposase SDY_2099 PF00027 Cyclic nucleotide-binding domain SDY_2100 PF03400 IS1 transposase SDY_2103 PF12759 InsA C-terminal domain SDY_2103 PF03811 InsA N-terminal domain SDY_2104 PF01156 Inosine-uridine preferring nucleoside hydrolase SDY_2105 PF01773 Na+ dependent nucleoside transporter N-terminus SDY_2105 PF07662 Na+ dependent nucleoside transporter C-terminus SDY_2106 PF00294 pfkB family carbohydrate kinase SDY_2107 PF01261 Xylose isomerase-like TIM barrel SDY_2108 PF03601 Conserved hypothetical protein 698 SDY_2109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2109 PF03466 LysR substrate binding domain SDY_2110 PF00324 Amino acid permease SDY_2112 PF00756 Putative esterase SDY_2122 PF03400 IS1 transposase SDY_2125 PF03400 IS1 transposase SDY_2127 PF01227 GTP cyclohydrolase I SDY_2129 PF00356 Bacterial regulatory proteins, lacI family SDY_2130 PF13407 Periplasmic binding protein domain SDY_2132 PF03400 IS1 transposase SDY_2134 PF03400 IS1 transposase SDY_2135 PF03400 IS1 transposase SDY_2136 PF03811 InsA N-terminal domain SDY_2136 PF12759 InsA C-terminal domain SDY_2137 PF02653 Branched-chain amino acid transport system / permease component SDY_2138 PF03400 IS1 transposase SDY_2140a PF01180 Dihydroorotate dehydrogenase SDY_2141 PF03400 IS1 transposase SDY_2142 PF10808 Protein of unknown function (DUF2542) SDY_2143 PF02698 DUF218 domain SDY_2144 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SDY_2144 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SDY_2145 PF04172 LrgB-like family SDY_2146 PF03788 LrgA family SDY_2148 PF03400 IS1 transposase SDY_2152 PF09335 SNARE associated Golgi protein SDY_2153 PF04893 Yip1 domain SDY_2154 PF00768 D-alanyl-D-alanine carboxypeptidase SDY_2155 PF09330 D-lactate dehydrogenase, membrane binding SDY_2155 PF01565 FAD binding domain SDY_2156 PF00933 Glycosyl hydrolase family 3 N terminal domain SDY_2156 PF14310 Fibronectin type III-like domain SDY_2156 PF01915 Glycosyl hydrolase family 3 C-terminal domain SDY_2157 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SDY_2160 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2162 PF13411 MerR HTH family regulatory protein SDY_2163 PF06580 Histidine kinase SDY_2163 PF07694 5TMR of 5TMR-LYT SDY_2164 PF00072 Response regulator receiver domain SDY_2164 PF04397 LytTr DNA-binding domain SDY_2165 PF07308 Protein of unknown function (DUF1456) SDY_2166 PF06998 Protein of unknown function (DUF1307) SDY_2167 PF04434 SWIM zinc finger SDY_2168 PF00665 Integrase core domain SDY_2168 PF13276 HTH-like domain SDY_2169 PF01527 Transposase SDY_2170 PF04434 SWIM zinc finger SDY_2175 PF03400 IS1 transposase SDY_2178 PF03400 IS1 transposase SDY_2180 PF13569 Domain of unknown function (DUF4132) SDY_2181 PF01588 Putative tRNA binding domain SDY_2181 PF09334 tRNA synthetases class I (M) SDY_2182 PF10609 NUBPL iron-transfer P-loop NTPase SDY_2183 PF10836 Protein of unknown function (DUF2574) SDY_2184 PF01527 Transposase SDY_2185 PF13276 HTH-like domain SDY_2185 PF00665 Integrase core domain SDY_2185 PF13333 Integrase core domain SDY_2186 PF00072 Response regulator receiver domain SDY_2186 PF00486 Transcriptional regulatory protein, C terminal SDY_2187 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_2187 PF00672 HAMP domain SDY_2187 PF00512 His Kinase A (phospho-acceptor) domain SDY_2188 PF07690 Major Facilitator Superfamily SDY_2189 PF01548 Transposase SDY_2189 PF02371 Transposase IS116/IS110/IS902 family SDY_2190 PF00092 von Willebrand factor type A domain SDY_2193 PF00012 Hsp70 protein SDY_2194 PF00730 HhH-GPD superfamily base excision DNA repair protein SDY_2194 PF06029 AlkA N-terminal domain SDY_2196 PF00485 Phosphoribulokinase / Uridine kinase family SDY_2197 PF00692 dUTPase SDY_2198 PF05170 AsmA family SDY_2201 PF03471 Transporter associated domain SDY_2201 PF00571 CBS domain SDY_2201 PF03741 Integral membrane protein TerC family SDY_2202 PF03400 IS1 transposase SDY_2203 PF00483 Nucleotidyl transferase SDY_2204 PF16363 GDP-mannose 4,6 dehydratase SDY_2205 PF04321 RmlD substrate binding domain SDY_2206 PF00483 Nucleotidyl transferase SDY_2207 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SDY_2208 PF01943 Polysaccharide biosynthesis protein SDY_2208 PF14667 Polysaccharide biosynthesis C-terminal domain SDY_2211 PF00535 Glycosyl transferase family 2 SDY_2212 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SDY_2212 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SDY_2213 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SDY_2213 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SDY_2213 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SDY_2214 PF02706 Chain length determinant protein SDY_2215 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SDY_2215 PF01502 Phosphoribosyl-AMP cyclohydrolase SDY_2216 PF00977 Histidine biosynthesis protein SDY_2217 PF00977 Histidine biosynthesis protein SDY_2218 PF00117 Glutamine amidotransferase class-I SDY_2219 PF00475 Imidazoleglycerol-phosphate dehydratase SDY_2220 PF00155 Aminotransferase class I and II SDY_2221 PF00815 Histidinol dehydrogenase SDY_2222 PF08029 HisG, C-terminal domain SDY_2222 PF01634 ATP phosphoribosyltransferase SDY_2223 PF01370 NAD dependent epimerase/dehydratase family SDY_2226 PF13520 Amino acid permease SDY_2227 PF04143 Sulphur transport SDY_2228 PF13276 HTH-like domain SDY_2228 PF00665 Integrase core domain SDY_2229 PF01527 Transposase SDY_2230 PF01206 Sulfurtransferase TusA SDY_2231 PF00929 Exonuclease SDY_2231 PF08411 Exonuclease C-terminal SDY_2232 PF03400 IS1 transposase SDY_2233 PF07943 Penicillin-binding protein 5, C-terminal domain SDY_2233 PF00768 D-alanyl-D-alanine carboxypeptidase SDY_2235 PF03400 IS1 transposase SDY_2236 PF04632 Fusaric acid resistance protein family SDY_2237 PF04363 Protein of unknown function (DUF496) SDY_2238 PF03400 IS1 transposase SDY_2240 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SDY_2241 PF02654 Cobalamin-5-phosphate synthase SDY_2242 PF02277 Phosphoribosyltransferase SDY_2243 PF03734 L,D-transpeptidase catalytic domain SDY_2243 PF17969 L,D-transpeptidase C-terminal domain SDY_2245 PF03466 LysR substrate binding domain SDY_2245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2246 PF03466 LysR substrate binding domain SDY_2246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2248 PF01554 MatE SDY_2249 PF01554 MatE SDY_2251 PF12759 InsA C-terminal domain SDY_2251 PF03811 InsA N-terminal domain SDY_2252 PF03400 IS1 transposase SDY_2253 PF01048 Phosphorylase superfamily SDY_2253 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SDY_2254 PF00083 Sugar (and other) transporter SDY_2254 PF07690 Major Facilitator Superfamily SDY_2257 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SDY_2259 PF01136 Peptidase family U32 SDY_2259 PF16325 Peptidase family U32 C-terminal domain SDY_2261 PF00781 Diacylglycerol kinase catalytic domain SDY_2262 PF08220 DeoR-like helix-turn-helix domain SDY_2263 PF08240 Alcohol dehydrogenase GroES-like domain SDY_2263 PF00107 Zinc-binding dehydrogenase SDY_2265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_2267 PF03400 IS1 transposase SDY_2269 PF01116 Fructose-bisphosphate aldolase class-II SDY_2270 PF01791 DeoC/LacD family aldolase SDY_2271 PF03825 Nucleoside H+ symporter SDY_2272 PF03747 ADP-ribosylglycohydrolase SDY_2273 PF00294 pfkB family carbohydrate kinase SDY_2274 PF00392 Bacterial regulatory proteins, gntR family SDY_2274 PF07702 UTRA domain SDY_2277 PF08543 Phosphomethylpyrimidine kinase SDY_2278 PF02110 Hydroxyethylthiazole kinase family SDY_2279 PF02583 Metal-sensitive transcriptional repressor SDY_2280 PF03824 High-affinity nickel-transport protein SDY_2281 PF11776 Nickel/cobalt transporter regulator SDY_2285 PF03400 IS1 transposase SDY_2287 PF13954 PapC N-terminal domain SDY_2287 PF13953 PapC C-terminal domain SDY_2287 PF00577 Outer membrane usher protein SDY_2288 PF03400 IS1 transposase SDY_2289 PF12759 InsA C-terminal domain SDY_2289 PF03811 InsA N-terminal domain SDY_2291 PF01527 Transposase SDY_2292 PF00581 Rhodanese-like domain SDY_2292 PF17773 UPF0176 acylphosphatase like domain SDY_2292 PF12368 Rhodanase C-terminal SDY_2293 PF03279 Bacterial lipid A biosynthesis acyltransferase SDY_2296 PF01527 Transposase SDY_2297 PF07690 Major Facilitator Superfamily SDY_2299 PF13984 MsyB protein SDY_2300 PF07119 Protein of unknown function (DUF1375) SDY_2301 PF00535 Glycosyl transferase family 2 SDY_2302 PF04349 Periplasmic glucan biosynthesis protein, MdoG SDY_2303 PF01757 Acyltransferase family SDY_2304 PF13091 PLD-like domain SDY_2305 PF01661 Macro domain SDY_2307 PF03811 InsA N-terminal domain SDY_2307 PF12759 InsA C-terminal domain SDY_2308 PF03400 IS1 transposase SDY_2311 PF04264 YceI-like domain SDY_2312 PF01292 Prokaryotic cytochrome b561 SDY_2314 PF03400 IS1 transposase SDY_2315 PF02378 Phosphotransferase system, EIIC SDY_2315 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_2316 PF00294 pfkB family carbohydrate kinase SDY_2317 PF00381 PTS HPr component phosphorylation site SDY_2317 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDY_2318 PF03400 IS1 transposase SDY_2319 PF03358 NADPH-dependent FMN reductase SDY_2320 PF09084 NMT1/THI5 like SDY_2323 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2325 PF01433 Peptidase family M1 domain SDY_2325 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SDY_2325 PF11940 Domain of unknown function (DUF3458) Ig-like fold SDY_2326 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SDY_2326 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SDY_2327 PF00152 tRNA synthetases class II (D, K and N) SDY_2327 PF01336 OB-fold nucleic acid binding domain SDY_2328 PF00267 Gram-negative porin SDY_2329 PF00155 Aminotransferase class I and II SDY_2330 PF00753 Metallo-beta-lactamase superfamily SDY_2331 PF05951 Bacterial protein of unknown function (DUF882) SDY_2332 PF01471 Putative peptidoglycan binding domain SDY_2332 PF03734 L,D-transpeptidase catalytic domain SDY_2333 PF03400 IS1 transposase SDY_2334 PF16330 MukB hinge domain SDY_2334 PF04310 MukB N-terminal SDY_2335 PF04288 MukE-like family SDY_2336 PF03882 MukF winged-helix domain SDY_2336 PF17192 MukF middle domain SDY_2336 PF17193 MukF C-terminal domain SDY_2337 PF13847 Methyltransferase domain SDY_2338 PF02698 DUF218 domain SDY_2339 PF01636 Phosphotransferase enzyme family SDY_2340 PF02348 Cytidylyltransferase SDY_2341 PF03966 Trm112p-like protein SDY_2342 PF06224 Winged helix DNA-binding domain SDY_2343 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SDY_2344 PF00005 ABC transporter SDY_2344 PF00664 ABC transporter transmembrane region SDY_2345 PF00753 Metallo-beta-lactamase superfamily SDY_2345 PF03772 Competence protein SDY_2346 PF00216 Bacterial DNA-binding protein SDY_2347 PF00575 S1 RNA binding domain SDY_2348 PF02224 Cytidylate kinase SDY_2349 PF01435 Peptidase family M48 SDY_2350 PF00665 Integrase core domain SDY_2350 PF13276 HTH-like domain SDY_2350 PF01527 Transposase SDY_2351 PF00665 Integrase core domain SDY_2351 PF13276 HTH-like domain SDY_2352 PF01609 Transposase DDE domain SDY_2352 PF13006 Insertion element 4 transposase N-terminal SDY_2353 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDY_2354 PF00266 Aminotransferase class-V SDY_2355 PF04239 Protein of unknown function (DUF421) SDY_2357 PF01226 Formate/nitrite transporter SDY_2358 PF01228 Glycine radical SDY_2358 PF02901 Pyruvate formate lyase-like SDY_2359 PF04055 Radical SAM superfamily SDY_2360 PF03400 IS1 transposase SDY_2361 PF01527 Transposase SDY_2363 PF07690 Major Facilitator Superfamily SDY_2365 PF04976 DMSO reductase anchor subunit (DmsC) SDY_2367 PF00384 Molybdopterin oxidoreductase SDY_2367 PF01568 Molydopterin dinucleotide binding domain SDY_2367 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SDY_2368 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SDY_2368 PF02403 Seryl-tRNA synthetase N-terminal domain SDY_2369 PF16193 AAA C-terminal domain SDY_2369 PF00004 ATPase family associated with various cellular activities (AAA) SDY_2369 PF12002 MgsA AAA+ ATPase C terminal SDY_2370 PF03548 Outer membrane lipoprotein carrier protein LolA SDY_2371 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SDY_2371 PF17854 FtsK alpha domain SDY_2371 PF01580 FtsK/SpoIIIE family SDY_2371 PF09397 Ftsk gamma domain SDY_2372 PF01037 Lrp/AsnC ligand binding domain SDY_2373 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_2374 PF00005 ABC transporter SDY_2374 PF00664 ABC transporter transmembrane region SDY_2375 PF00664 ABC transporter transmembrane region SDY_2375 PF00005 ABC transporter SDY_2376 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SDY_2377 PF01176 Translation initiation factor 1A / IF-1 SDY_2379 PF00004 ATPase family associated with various cellular activities (AAA) SDY_2379 PF07724 AAA domain (Cdc48 subfamily) SDY_2379 PF10431 C-terminal, D2-small domain, of ClpB protein SDY_2379 PF17871 AAA lid domain SDY_2379 PF02861 Clp amino terminal domain, pathogenicity island component SDY_2380 PF02617 ATP-dependent Clp protease adaptor protein ClpS SDY_2381 PF00313 'Cold-shock' DNA-binding domain SDY_2382 PF00005 ABC transporter SDY_2382 PF12704 MacB-like periplasmic core domain SDY_2383 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_2384 PF04393 Protein of unknown function (DUF535) SDY_2385 PF11398 Protein of unknown function (DUF2813) SDY_2386 PF03400 IS1 transposase SDY_2387 PF12759 InsA C-terminal domain SDY_2387 PF03811 InsA N-terminal domain SDY_2388 PF00230 Major intrinsic protein SDY_2389 PF03956 Lysine exporter LysO SDY_2390 PF03063 Prismane/CO dehydrogenase family SDY_2391 PF00111 2Fe-2S iron-sulfur cluster binding domain SDY_2391 PF00970 Oxidoreductase FAD-binding domain SDY_2391 PF00175 Oxidoreductase NAD-binding domain SDY_2392 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_2392 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_2392 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_2393 PF01212 Beta-eliminating lyase SDY_2394 PF13460 NAD(P)H-binding SDY_2394 PF11066 Protein of unknown function (DUF2867) SDY_2395 PF01370 NAD dependent epimerase/dehydratase family SDY_2396 PF01510 N-acetylmuramoyl-L-alanine amidase SDY_2397 PF01906 Putative heavy-metal-binding SDY_2398 PF12759 InsA C-terminal domain SDY_2398 PF03811 InsA N-terminal domain SDY_2398a PF03400 IS1 transposase SDY_2400 PF03400 IS1 transposase SDY_2402 PF03400 IS1 transposase SDY_2404 PF00005 ABC transporter SDY_2405 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_2406 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2407 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2408 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_2410 PF13276 HTH-like domain SDY_2410 PF00665 Integrase core domain SDY_2410 PF13333 Integrase core domain SDY_2411 PF01527 Transposase SDY_2418 PF13276 HTH-like domain SDY_2418 PF00665 Integrase core domain SDY_2418 PF13333 Integrase core domain SDY_2419 PF01527 Transposase SDY_2420 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain SDY_2420 PF00589 Phage integrase family SDY_2421 PF06672 Protein of unknown function (DUF1175) SDY_2422 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SDY_2422 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SDY_2423 PF03989 DNA gyrase C-terminal domain, beta-propeller SDY_2423 PF00521 DNA gyrase/topoisomerase IV, subunit A SDY_2428 PF02867 Ribonucleotide reductase, barrel domain SDY_2428 PF00317 Ribonucleotide reductase, all-alpha domain SDY_2428 PF03477 ATP cone domain SDY_2429 PF00268 Ribonucleotide reductase, small chain SDY_2430 PF00111 2Fe-2S iron-sulfur cluster binding domain SDY_2432 PF07690 Major Facilitator Superfamily SDY_2434 PF03009 Glycerophosphoryl diester phosphodiesterase family SDY_2435 PF07690 Major Facilitator Superfamily SDY_2436 PF04324 BFD-like [2Fe-2S] binding domain SDY_2436 PF01266 FAD dependent oxidoreductase SDY_2437 PF00890 FAD binding domain SDY_2438 PF02754 Cysteine-rich domain SDY_2438 PF13183 4Fe-4S dicluster domain SDY_2439 PF04754 Putative transposase, YhgA-like SDY_2440 PF03328 HpcH/HpaI aldolase/citrate lyase family SDY_2440a PF12759 InsA C-terminal domain SDY_2440a PF03811 InsA N-terminal domain SDY_2442 PF03400 IS1 transposase SDY_2445 PF03811 InsA N-terminal domain SDY_2445 PF12759 InsA C-terminal domain SDY_2448 PF03400 IS1 transposase SDY_2449 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SDY_2452 PF01522 Polysaccharide deacetylase SDY_2453 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SDY_2456 PF13193 AMP-binding enzyme C-terminal domain SDY_2456 PF00501 AMP-binding enzyme SDY_2457 PF13378 Enolase C-terminal domain-like SDY_2458 PF00378 Enoyl-CoA hydratase/isomerase SDY_2459 PF12697 Alpha/beta hydrolase family SDY_2460 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_2460 PF16582 Middle domain of thiamine pyrophosphate SDY_2460 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_2461 PF00425 chorismate binding enzyme SDY_2462 PF05957 Bacterial protein of unknown function (DUF883) SDY_2463 PF13673 Acetyltransferase (GNAT) domain SDY_2464 PF12706 Beta-lactamase superfamily domain SDY_2465 PF02902 Ulp1 protease family, C-terminal catalytic domain SDY_2466 PF03811 InsA N-terminal domain SDY_2466 PF12759 InsA C-terminal domain SDY_2467 PF03400 IS1 transposase SDY_2469 PF03400 IS1 transposase SDY_2471 PF08974 Domain of unknown function (DUF1877) SDY_2472 PF00361 Proton-conducting membrane transporter SDY_2473 PF00361 Proton-conducting membrane transporter SDY_2474 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SDY_2474 PF00361 Proton-conducting membrane transporter SDY_2475 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SDY_2476 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SDY_2477 PF12838 4Fe-4S dicluster domain SDY_2478 PF00146 NADH dehydrogenase SDY_2479 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SDY_2479 PF01568 Molydopterin dinucleotide binding domain SDY_2479 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SDY_2479 PF00384 Molybdopterin oxidoreductase SDY_2480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SDY_2480 PF10531 SLBB domain SDY_2480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SDY_2482 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SDY_2482 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SDY_2483 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SDY_2484 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SDY_2485 PF03466 LysR substrate binding domain SDY_2485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2486 PF00155 Aminotransferase class I and II SDY_2488 PF02080 TrkA-C domain SDY_2488 PF03600 Citrate transporter SDY_2489 PF13419 Haloacid dehalogenase-like hydrolase SDY_2490 PF03887 YfbU domain SDY_2491 PF04217 Protein of unknown function, DUF412 SDY_2492 PF00871 Acetokinase family SDY_2493 PF01515 Phosphate acetyl/butaryl transferase SDY_2493 PF07085 DRTGG domain SDY_2494 PF03606 C4-dicarboxylate anaerobic carrier SDY_2495 PF00293 NUDIX domain SDY_2496 PF12850 Calcineurin-like phosphoesterase superfamily domain SDY_2499 PF00043 Glutathione S-transferase, C-terminal domain SDY_2499 PF02798 Glutathione S-transferase, N-terminal domain SDY_2500 PF02152 Dihydroneopterin aldolase SDY_2501 PF01370 NAD dependent epimerase/dehydratase family SDY_2501 PF08338 Domain of unknown function (DUF1731) SDY_2502 PF04754 Putative transposase, YhgA-like SDY_2505 PF00005 ABC transporter SDY_2506 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2507 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2508 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_2509 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_2510 PF02441 Flavoprotein SDY_2511 PF00156 Phosphoribosyl transferase domain SDY_2512 PF02674 Colicin V production protein SDY_2513 PF05036 Sporulation related domain SDY_2514 PF02875 Mur ligase family, glutamate ligase domain SDY_2514 PF08245 Mur ligase middle domain SDY_2515 PF17848 Acetyl-coA carboxylase zinc finger domain SDY_2515 PF01039 Carboxyl transferase domain SDY_2516 PF09335 SNARE associated Golgi protein SDY_2517 PF01416 tRNA pseudouridine synthase SDY_2518 PF01118 Semialdehyde dehydrogenase, NAD binding domain SDY_2518 PF02774 Semialdehyde dehydrogenase, dimerisation domain SDY_2519 PF11890 Domain of unknown function (DUF3410) SDY_2519 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDY_2519 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SDY_2521 PF07690 Major Facilitator Superfamily SDY_2522 PF00109 Beta-ketoacyl synthase, N-terminal domain SDY_2522 PF02801 Beta-ketoacyl synthase, C-terminal domain SDY_2523 PF01266 FAD dependent oxidoreductase SDY_2523 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SDY_2524 PF08891 YfcL protein SDY_2525 PF04315 Elongation factor P hydroxylase SDY_2527 PF03411 Penicillin-insensitive murein endopeptidase SDY_2528 PF01264 Chorismate synthase SDY_2529 PF01713 Smr domain SDY_2530 PF05175 Methyltransferase small domain SDY_2532 PF00419 Fimbrial protein SDY_2533 PF00419 Fimbrial protein SDY_2534 PF00419 Fimbrial protein SDY_2535 PF02753 Pili assembly chaperone PapD, C-terminal domain SDY_2535 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SDY_2539 PF03400 IS1 transposase SDY_2540 PF12759 InsA C-terminal domain SDY_2540 PF03811 InsA N-terminal domain SDY_2541 PF00300 Histidine phosphatase superfamily (branch 1) SDY_2542 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SDY_2542 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SDY_2542 PF00378 Enoyl-CoA hydratase/isomerase SDY_2543 PF00108 Thiolase, N-terminal domain SDY_2543 PF02803 Thiolase, C-terminal domain SDY_2544 PF04175 Protein of unknown function (DUF406) SDY_2545 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SDY_2547 PF03400 IS1 transposase SDY_2548 PF03400 IS1 transposase SDY_2549 PF03811 InsA N-terminal domain SDY_2549 PF12759 InsA C-terminal domain SDY_2550 PF04333 MlaA lipoprotein SDY_2551 PF01226 Formate/nitrite transporter SDY_2553 PF03400 IS1 transposase SDY_2554 PF03811 InsA N-terminal domain SDY_2554 PF12759 InsA C-terminal domain SDY_2555 PF03400 IS1 transposase SDY_2558 PF00251 Glycosyl hydrolases family 32 N-terminal domain SDY_2558 PF08244 Glycosyl hydrolases family 32 C terminal SDY_2559 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_2559 PF00356 Bacterial regulatory proteins, lacI family SDY_2560 PF02447 GntP family permease SDY_2561 PF00291 Pyridoxal-phosphate dependent enzyme SDY_2562 PF07690 Major Facilitator Superfamily SDY_2563 PF00529 HlyD membrane-fusion protein of T1SS SDY_2563 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_2565 PF03400 IS1 transposase SDY_2567 PF03400 IS1 transposase SDY_2568 PF03811 InsA N-terminal domain SDY_2568 PF12759 InsA C-terminal domain SDY_2569 PF02515 CoA-transferase family III SDY_2570 PF03547 Membrane transport protein SDY_2571 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_2571 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_2571 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_2572 PF02515 CoA-transferase family III SDY_2573 PF10938 YfdX protein SDY_2575 PF10810 Protein of unknown function (DUF2545) SDY_2576 PF03279 Bacterial lipid A biosynthesis acyltransferase SDY_2577 PF00155 Aminotransferase class I and II SDY_2579 PF06580 Histidine kinase SDY_2579 PF07694 5TMR of 5TMR-LYT SDY_2579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_2583 PF05343 M42 glutamyl aminopeptidase SDY_2584 PF00557 Metallopeptidase family M24 SDY_2584 PF01321 Creatinase/Prolidase N-terminal domain SDY_2585 PF02378 Phosphotransferase system, EIIC SDY_2586 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_2587 PF02685 Glucokinase SDY_2588 PF01566 Natural resistance-associated macrophage protein SDY_2589 PF00665 Integrase core domain SDY_2589 PF01527 Transposase SDY_2589 PF13276 HTH-like domain SDY_2591 PF03400 IS1 transposase SDY_2593 PF07662 Na+ dependent nucleoside transporter C-terminus SDY_2593 PF01773 Na+ dependent nucleoside transporter N-terminus SDY_2593 PF07670 Nucleoside recognition SDY_2596 PF07037 Putative transcription regulator (DUF1323) SDY_2597 PF07037 Putative transcription regulator (DUF1323) SDY_2598 PF07282 Putative transposase DNA-binding domain SDY_2598 PF12323 Helix-turn-helix domain SDY_2598 PF01385 Probable transposase SDY_2600 PF00749 tRNA synthetases class I (E and Q), catalytic domain SDY_2606 PF13593 SBF-like CPA transporter family (DUF4137) SDY_2607 PF12843 Putative quorum-sensing-regulated virulence factor SDY_2608 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SDY_2608 PF03120 NAD-dependent DNA ligase OB-fold domain SDY_2608 PF12826 Helix-hairpin-helix motif SDY_2608 PF00533 BRCA1 C Terminus (BRCT) domain SDY_2608 PF01653 NAD-dependent DNA ligase adenylation domain SDY_2609 PF04354 ZipA, C-terminal FtsZ-binding domain SDY_2611 PF00291 Pyridoxal-phosphate dependent enzyme SDY_2612 PF00381 PTS HPr component phosphorylation site SDY_2613 PF02896 PEP-utilising enzyme, TIM barrel domain SDY_2613 PF00391 PEP-utilising enzyme, mobile domain SDY_2613 PF05524 PEP-utilising enzyme, N-terminal SDY_2614 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SDY_2615 PF08543 Phosphomethylpyrimidine kinase SDY_2616 PF17263 Family of unknown function (DUF5329) SDY_2617 PF00291 Pyridoxal-phosphate dependent enzyme SDY_2618 PF00005 ABC transporter SDY_2619 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2620 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2623 PF01418 Helix-turn-helix domain, rpiR family SDY_2623 PF01380 SIS domain SDY_2624 PF01380 SIS domain SDY_2625 PF02378 Phosphotransferase system, EIIC SDY_2625 PF00367 phosphotransferase system, EIIB SDY_2629 PF04261 Dyp-type peroxidase family SDY_2630 PF06572 Protein of unknown function (DUF1131) SDY_2631 PF11143 Protein of unknown function (DUF2919) SDY_2632 PF00583 Acetyltransferase (GNAT) family SDY_2633 PF01520 N-acetylmuramoyl-L-alanine amidase SDY_2634 PF01218 Coproporphyrinogen III oxidase SDY_2635 PF12833 Helix-turn-helix domain SDY_2636 PF00936 BMC domain SDY_2636 PF16365 Ethanolamine utilization protein EutK C-terminus SDY_2637 PF00936 BMC domain SDY_2638 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SDY_2639 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SDY_2645 PF01515 Phosphate acetyl/butaryl transferase SDY_2645 PF00390 Malic enzyme, N-terminal domain SDY_2645 PF03949 Malic enzyme, NAD binding domain SDY_2648 PF03400 IS1 transposase SDY_2649 PF06674 Protein of unknown function (DUF1176) SDY_2650 PF00293 NUDIX domain SDY_2651 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SDY_2651 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_2651 PF13247 4Fe-4S dicluster domain SDY_2652 PF03400 IS1 transposase SDY_2653 PF00672 HAMP domain SDY_2653 PF07730 Histidine kinase SDY_2653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_2653 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SDY_2654 PF00873 AcrB/AcrD/AcrF family SDY_2655 PF03960 ArsC family SDY_2656 PF07687 Peptidase dimerisation domain SDY_2656 PF01546 Peptidase family M20/M25/M40 SDY_2657 PF13980 Uncharacterised protein family (UPF0370) SDY_2660 PF03400 IS1 transposase SDY_2661 PF13718 GNAT acetyltransferase 2 SDY_2661 PF05127 Helicase SDY_2661 PF17176 tRNA-binding domain SDY_2661 PF08351 Domain of unknown function (DUF1726) SDY_2664 PF01259 SAICAR synthetase SDY_2666 PF06804 NlpB/DapX lipoprotein SDY_2667 PF00701 Dihydrodipicolinate synthetase family SDY_2668 PF01842 ACT domain SDY_2669 PF00578 AhpC/TSA family SDY_2670 PF00037 4Fe-4S binding domain SDY_2670 PF12798 4Fe-4S binding domain SDY_2671 PF00361 Proton-conducting membrane transporter SDY_2672 PF00146 NADH dehydrogenase SDY_2674 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SDY_2675 PF00361 Proton-conducting membrane transporter SDY_2675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SDY_2676 PF00374 Nickel-dependent hydrogenase SDY_2676 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SDY_2676 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SDY_2678 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SDY_2679 PF07450 Formate hydrogenlyase maturation protein HycH SDY_2681 PF01226 Formate/nitrite transporter SDY_2682 PF01594 AI-2E family transporter SDY_2683 PF01435 Peptidase family M48 SDY_2684 PF03960 ArsC family SDY_2685 PF00308 Bacterial dnaA protein SDY_2686 PF00860 Permease family SDY_2688 PF02769 AIR synthase related protein, C-terminal domain SDY_2688 PF00586 AIR synthase related protein, N-terminal domain SDY_2689 PF00551 Formyl transferase SDY_2690 PF17941 Polyphosphate kinase C-terminal domain 1 SDY_2690 PF13089 Polyphosphate kinase N-terminal domain SDY_2690 PF13090 Polyphosphate kinase C-terminal domain 2 SDY_2690 PF02503 Polyphosphate kinase middle domain SDY_2691 PF02541 Ppx/GppA phosphatase family SDY_2693 PF03400 IS1 transposase SDY_2695 PF03400 IS1 transposase SDY_2696 PF11119 Protein of unknown function (DUF2633) SDY_2698 PF03400 IS1 transposase SDY_2699 PF05433 Glycine zipper 2TM domain SDY_2700 PF00665 Integrase core domain SDY_2700 PF13276 HTH-like domain SDY_2701 PF01527 Transposase SDY_2702 PF17358 Family of unknown function (DUF5384) SDY_2703 PF02540 NAD synthase SDY_2703 PF00958 GMP synthase C terminal domain SDY_2703 PF00117 Glutamine amidotransferase class-I SDY_2704 PF00571 CBS domain SDY_2704 PF00478 IMP dehydrogenase / GMP reductase domain SDY_2705 PF13742 OB-fold nucleic acid binding domain SDY_2705 PF02601 Exonuclease VII, large subunit SDY_2706 PF07191 zinc-ribbons SDY_2707 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SDY_2707 PF01926 50S ribosome-binding GTPase SDY_2708 PF13360 PQQ-like domain SDY_2709 PF09976 Tetratricopeptide repeat-like domain SDY_2710 PF13393 Histidyl-tRNA synthetase SDY_2710 PF03129 Anticodon binding domain SDY_2711 PF04551 GcpE protein SDY_2712 PF13464 Domain of unknown function (DUF4115) SDY_2713 PF04055 Radical SAM superfamily SDY_2714 PF00334 Nucleoside diphosphate kinase SDY_2717 PF00581 Rhodanese-like domain SDY_2718 PF07179 SseB protein N-terminal domain SDY_2718 PF14581 SseB protein C-terminal domain SDY_2719 PF12404 Peptidase SDY_2719 PF00883 Cytosol aminopeptidase family, catalytic domain SDY_2720 PF04384 Iron-sulphur cluster assembly SDY_2721 PF00111 2Fe-2S iron-sulfur cluster binding domain SDY_2722 PF00012 Hsp70 protein SDY_2723 PF07743 HSCB C-terminal oligomerisation domain SDY_2724 PF01521 Iron-sulphur cluster biosynthesis SDY_2725 PF01592 NifU-like N terminal domain SDY_2726 PF00266 Aminotransferase class-V SDY_2727 PF02082 Transcriptional regulator SDY_2728 PF00588 SpoU rRNA Methylase family SDY_2729 PF00459 Inositol monophosphatase family SDY_2730 PF12146 Serine aminopeptidase, S33 SDY_2731 PF00874 PRD domain SDY_2732 PF12832 MFS_1 like family SDY_2733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2733 PF03466 LysR substrate binding domain SDY_2734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2734 PF03466 LysR substrate binding domain SDY_2735 PF03400 IS1 transposase SDY_2736 PF13407 Periplasmic binding protein domain SDY_2739 PF03400 IS1 transposase SDY_2740 PF00480 ROK family SDY_2741 PF00464 Serine hydroxymethyltransferase SDY_2742 PF00970 Oxidoreductase FAD-binding domain SDY_2742 PF00042 Globin SDY_2742 PF00175 Oxidoreductase NAD-binding domain SDY_2743 PF00543 Nitrogen regulatory protein P-II SDY_2744 PF00158 Sigma-54 interaction domain SDY_2744 PF00072 Response regulator receiver domain SDY_2745 PF13942 YfhG lipoprotein SDY_2746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_2746 PF00512 His Kinase A (phospho-acceptor) domain SDY_2747 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SDY_2747 PF02769 AIR synthase related protein, C-terminal domain SDY_2747 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SDY_2748 PF01464 Transglycosylase SLT domain SDY_2748 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_2749 PF14437 MafB19-like deaminase SDY_2751 PF01380 SIS domain SDY_2751 PF01418 Helix-turn-helix domain, rpiR family SDY_2752 PF00239 Resolvase, N terminal domain SDY_2752 PF02796 Helix-turn-helix domain of resolvase SDY_2753 PF14496 C-terminal novel E3 ligase, LRR-interacting SDY_2753 PF12468 Type III secretion system leucine rich repeat protein SDY_2755 PF01527 Transposase SDY_2761 PF03400 IS1 transposase SDY_2762 PF10973 Protein of unknown function (DUF2799) SDY_2763 PF12759 InsA C-terminal domain SDY_2763 PF03811 InsA N-terminal domain SDY_2765 PF00793 DAHP synthetase I family SDY_2766 PF02153 Prephenate dehydrogenase SDY_2766 PF01817 Chorismate mutase type II SDY_2767 PF01817 Chorismate mutase type II SDY_2767 PF00800 Prephenate dehydratase SDY_2768 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SDY_2769 PF13006 Insertion element 4 transposase N-terminal SDY_2769 PF01609 Transposase DDE domain SDY_2770 PF01527 Transposase SDY_2771 PF13333 Integrase core domain SDY_2771 PF00665 Integrase core domain SDY_2771 PF13276 HTH-like domain SDY_2774 PF00665 Integrase core domain SDY_2774 PF13276 HTH-like domain SDY_2774 PF01527 Transposase SDY_2776 PF03400 IS1 transposase SDY_2777 PF13689 YfiR/HmsC-like SDY_2780 PF01245 Ribosomal protein L19 SDY_2781 PF01746 tRNA (Guanine-1)-methyltransferase SDY_2782 PF05239 PRC-barrel domain SDY_2782 PF01782 RimM N-terminal domain SDY_2783 PF00886 Ribosomal protein S16 SDY_2784 PF00448 SRP54-type protein, GTPase domain SDY_2784 PF02978 Signal peptide binding domain SDY_2784 PF02881 SRP54-type protein, helical bundle domain SDY_2785 PF01578 Cytochrome C assembly protein SDY_2786 PF01595 Cyclin M transmembrane N-terminal domain SDY_2786 PF03471 Transporter associated domain SDY_2786 PF00571 CBS domain SDY_2787 PF01025 GrpE SDY_2788 PF01513 ATP-NAD kinase SDY_2789 PF02463 RecF/RecN/SMC N terminal domain SDY_2790 PF04355 SmpA / OmlA family SDY_2791 PF03658 RnfH family Ubiquitin SDY_2792 PF03364 Polyketide cyclase / dehydrase and lipid transport SDY_2793 PF01668 SmpB protein SDY_2794 PF03797 Autotransporter beta-domain SDY_2797 PF03400 IS1 transposase SDY_2801 PF12838 4Fe-4S dicluster domain SDY_2802 PF03400 IS1 transposase SDY_2804 PF01648 4'-phosphopantetheinyl transferase superfamily SDY_2805 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SDY_2806 PF02565 Recombination protein O C terminal SDY_2806 PF11967 Recombination protein O N terminal SDY_2807 PF07650 KH domain SDY_2807 PF01926 50S ribosome-binding GTPase SDY_2808 PF14622 Ribonuclease-III-like SDY_2808 PF00035 Double-stranded RNA binding motif SDY_2809 PF10502 Signal peptidase, peptidase S26 SDY_2810 PF03144 Elongation factor Tu domain 2 SDY_2810 PF06421 GTP-binding protein LepA C-terminus SDY_2810 PF00679 Elongation factor G C-terminus SDY_2810 PF00009 Elongation factor Tu GTP binding domain SDY_2812 PF03888 MucB/RseB N-terminal domain SDY_2812 PF17188 MucB/RseB C-terminal domain SDY_2813 PF03872 Anti sigma-E protein RseA, N-terminal domain SDY_2813 PF03873 Anti sigma-E protein RseA, C-terminal domain SDY_2814 PF08281 Sigma-70, region 4 SDY_2814 PF04542 Sigma-70 region 2 SDY_2815 PF02910 Fumarate reductase flavoprotein C-term SDY_2815 PF00890 FAD binding domain SDY_2816 PF05175 Methyltransferase small domain SDY_2817 PF00270 DEAD/DEAH box helicase SDY_2817 PF00271 Helicase conserved C-terminal domain SDY_2818 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_2818 PF03466 LysR substrate binding domain SDY_2819 PF01527 Transposase SDY_2821 PF01810 LysE type translocator SDY_2822 PF01228 Glycine radical SDY_2823 PF03167 Uracil DNA glycosylase superfamily SDY_2824 PF08032 RNA 2'-O ribose methyltransferase substrate binding SDY_2824 PF00588 SpoU rRNA Methylase family SDY_2825 PF00085 Thioredoxin SDY_2826 PF03942 DTW domain SDY_2827 PF13380 CoA binding domain SDY_2827 PF13607 Succinyl-CoA ligase like flavodoxin domain SDY_2827 PF00583 Acetyltransferase (GNAT) family SDY_2828 PF13091 PLD-like domain SDY_2829 PF10043 Predicted periplasmic lipoprotein (DUF2279) SDY_2830 PF00083 Sugar (and other) transporter SDY_2835 PF07724 AAA domain (Cdc48 subfamily) SDY_2835 PF02861 Clp amino terminal domain, pathogenicity island component SDY_2835 PF17871 AAA lid domain SDY_2835 PF00004 ATPase family associated with various cellular activities (AAA) SDY_2835 PF10431 C-terminal, D2-small domain, of ClpB protein SDY_2836 PF02578 Multi-copper polyphenol oxidoreductase laccase SDY_2837 PF01479 S4 domain SDY_2837 PF00849 RNA pseudouridylate synthase SDY_2838 PF13525 Outer membrane lipoprotein SDY_2839 PF13006 Insertion element 4 transposase N-terminal SDY_2839 PF01609 Transposase DDE domain SDY_2841 PF05717 IS66 Orf2 like protein SDY_2842 PF13333 Integrase core domain SDY_2842 PF13276 HTH-like domain SDY_2842 PF00665 Integrase core domain SDY_2843 PF01527 Transposase SDY_2844a PF01848 Hok/gef family SDY_2845 PF01527 Transposase SDY_2846 PF01527 Transposase SDY_2846 PF00665 Integrase core domain SDY_2846 PF13333 Integrase core domain SDY_2846 PF13276 HTH-like domain SDY_2847 PF03400 IS1 transposase SDY_2848 PF00665 Integrase core domain SDY_2848 PF01527 Transposase SDY_2848 PF13333 Integrase core domain SDY_2848 PF13276 HTH-like domain SDY_2849 PF03400 IS1 transposase SDY_2850 PF12759 InsA C-terminal domain SDY_2850 PF03811 InsA N-terminal domain SDY_2851 PF00171 Aldehyde dehydrogenase family SDY_2853 PF00324 Amino acid permease SDY_2854 PF07729 FCD domain SDY_2854 PF00392 Bacterial regulatory proteins, gntR family SDY_2855 PF01476 LysM domain SDY_2855 PF04972 BON domain SDY_2856 PF01679 Proteolipid membrane potential modulator SDY_2857 PF01022 Bacterial regulatory protein, arsR family SDY_2858 PF11127 Protein of unknown function (DUF2892) SDY_2858 PF00581 Rhodanese-like domain SDY_2859 PF00816 H-NS histone family SDY_2860 PF06610 L-alanine exporter SDY_2862 PF09400 Protein of unknown function (DUF2002) SDY_2863 PF05957 Bacterial protein of unknown function (DUF883) SDY_2864 PF00155 Aminotransferase class I and II SDY_2864 PF00392 Bacterial regulatory proteins, gntR family SDY_2865 PF02627 Carboxymuconolactone decarboxylase family SDY_2866 PF00462 Glutaredoxin SDY_2867 PF07972 NrdI Flavodoxin like SDY_2869 PF00268 Ribonucleotide reductase, small chain SDY_2870 PF03400 IS1 transposase SDY_2871 PF12759 InsA C-terminal domain SDY_2871 PF03811 InsA N-terminal domain SDY_2872 PF00005 ABC transporter SDY_2872 PF00571 CBS domain SDY_2873 PF00528 Binding-protein-dependent transport system inner membrane component SDY_2874 PF03400 IS1 transposase SDY_2876 PF07690 Major Facilitator Superfamily SDY_2877 PF03591 AzlC protein SDY_2878 PF05437 Branched-chain amino acid transport protein (AzlD) SDY_2879 PF01047 MarR family SDY_2880 PF00529 HlyD membrane-fusion protein of T1SS SDY_2880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_2884 PF02664 S-Ribosylhomocysteinase (LuxS) SDY_2885 PF04262 Glutamate-cysteine ligase SDY_2887 PF13419 Haloacid dehalogenase-like hydrolase SDY_2892 PF02599 Global regulator protein family SDY_2893 PF02272 DHHA1 domain SDY_2893 PF01411 tRNA synthetases class II (A) SDY_2893 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SDY_2894 PF02631 RecX family SDY_2895 PF00154 recA bacterial DNA recombination protein SDY_2896 PF02464 Competence-damaged protein SDY_2897 PF13406 Transglycosylase SLT domain SDY_2898 PF03608 PTS system enzyme II sorbitol-specific factor SDY_2899 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SDY_2899 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SDY_2901 PF03829 PTS system glucitol/sorbitol-specific IIA component SDY_2902 PF00106 short chain dehydrogenase SDY_2903 PF06923 Glucitol operon activator protein (GutM) SDY_2904 PF08220 DeoR-like helix-turn-helix domain SDY_2904 PF00455 DeoR C terminal sensor domain SDY_2905 PF01380 SIS domain SDY_2905 PF00571 CBS domain SDY_2906 PF01590 GAF domain SDY_2906 PF00158 Sigma-54 interaction domain SDY_2907 PF00258 Flavodoxin SDY_2907 PF00753 Metallo-beta-lactamase superfamily SDY_2907 PF00301 Rubredoxin SDY_2908 PF18113 Rubredoxin binding C-terminal domain SDY_2908 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_2909 PF07503 HypF finger SDY_2909 PF01300 Telomere recombination SDY_2909 PF00708 Acylphosphatase SDY_2909 PF17788 HypF Kae1-like domain SDY_2910 PF13247 4Fe-4S dicluster domain SDY_2910 PF12800 4Fe-4S binding domain SDY_2911 PF00356 Bacterial regulatory proteins, lacI family SDY_2912 PF00232 Glycosyl hydrolase family 1 SDY_2913 PF01381 Helix-turn-helix SDY_2914 PF01750 Hydrogenase maturation protease SDY_2915 PF07450 Formate hydrogenlyase maturation protein HycH SDY_2917 PF12838 4Fe-4S dicluster domain SDY_2918 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SDY_2918 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SDY_2918 PF00374 Nickel-dependent hydrogenase SDY_2921 PF13247 4Fe-4S dicluster domain SDY_2922 PF11046 Transcriptional repressor of hyc and hyp operons SDY_2923 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SDY_2924 PF02492 CobW/HypB/UreG, nucleotide-binding domain SDY_2925 PF01455 HupF/HypC family SDY_2926 PF01924 Hydrogenase formation hypA family SDY_2927 PF00586 AIR synthase related protein, N-terminal domain SDY_2927 PF02769 AIR synthase related protein, C-terminal domain SDY_2929 PF13333 Integrase core domain SDY_2929 PF13276 HTH-like domain SDY_2929 PF00665 Integrase core domain SDY_2930 PF01527 Transposase SDY_2932 PF11756 Nitrous oxide-stimulated promoter SDY_2933 PF05188 MutS domain II SDY_2933 PF05192 MutS domain III SDY_2933 PF01624 MutS domain I SDY_2933 PF05190 MutS family domain IV SDY_2933 PF00488 MutS domain V SDY_2934 PF03400 IS1 transposase SDY_2935 PF03811 InsA N-terminal domain SDY_2935 PF12759 InsA C-terminal domain SDY_2938 PF02441 Flavoprotein SDY_2939 PF01047 MarR family SDY_2940 PF04545 Sigma-70, region 4 SDY_2940 PF04539 Sigma-70 region 3 SDY_2940 PF04542 Sigma-70 region 2 SDY_2940 PF00140 Sigma-70 factor, region 1.2 SDY_2941 PF01551 Peptidase family M23 SDY_2941 PF01476 LysM domain SDY_2943 PF01975 Survival protein SurE SDY_2944 PF01142 tRNA pseudouridine synthase D (TruD) SDY_2945 PF02542 YgbB family SDY_2946 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SDY_2947 PF04977 Septum formation initiator SDY_2948 PF12084 Protein of unknown function (DUF3561) SDY_2950 PF00009 Elongation factor Tu GTP binding domain SDY_2951 PF01507 Phosphoadenosine phosphosulfate reductase family SDY_2952 PF04389 Peptidase family M28 SDY_2953 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SDY_2955 PF08798 CRISPR associated protein SDY_2956 PF12759 InsA C-terminal domain SDY_2956 PF03811 InsA N-terminal domain SDY_2957 PF03400 IS1 transposase SDY_2960 PF01527 Transposase SDY_2961 PF00665 Integrase core domain SDY_2961 PF13333 Integrase core domain SDY_2961 PF13276 HTH-like domain SDY_2962 PF03400 IS1 transposase SDY_2963 PF03811 InsA N-terminal domain SDY_2963 PF12759 InsA C-terminal domain SDY_2964 PF01507 Phosphoadenosine phosphosulfate reductase family SDY_2965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SDY_2965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SDY_2966 PF00258 Flavodoxin SDY_2966 PF00175 Oxidoreductase NAD-binding domain SDY_2966 PF00667 FAD binding domain SDY_2967 PF01242 6-pyruvoyl tetrahydropterin synthase SDY_2968 PF01266 FAD dependent oxidoreductase SDY_2970 PF04309 Glycerol-3-phosphate responsive antiterminator SDY_2973 PF00083 Sugar (and other) transporter SDY_2975 PF03400 IS1 transposase SDY_2978 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDY_2978 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SDY_2979 PF00665 Integrase core domain SDY_2979 PF13276 HTH-like domain SDY_2980 PF01527 Transposase SDY_2981 PF04055 Radical SAM superfamily SDY_2983 PF03400 IS1 transposase SDY_2986 PF03400 IS1 transposase SDY_2987 PF01527 Transposase SDY_2990 PF01527 Transposase SDY_2993 PF03400 IS1 transposase SDY_2994 PF03811 InsA N-terminal domain SDY_2994 PF12759 InsA C-terminal domain SDY_2996 PF03952 Enolase, N-terminal domain SDY_2996 PF00113 Enolase, C-terminal TIM barrel domain SDY_2997 PF00117 Glutamine amidotransferase class-I SDY_2997 PF06418 CTP synthase N-terminus SDY_2998 PF03819 MazG nucleotide pyrophosphohydrolase domain SDY_2999 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SDY_3000 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SDY_3001 PF04607 Region found in RelA / SpoT proteins SDY_3001 PF13291 ACT domain SDY_3001 PF02824 TGS domain SDY_3002 PF01938 TRAM domain SDY_3002 PF05958 tRNA (Uracil-5-)-methyltransferase SDY_3003 PF00672 HAMP domain SDY_3003 PF00072 Response regulator receiver domain SDY_3003 PF01627 Hpt domain SDY_3003 PF00512 His Kinase A (phospho-acceptor) domain SDY_3003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3003 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SDY_3007 PF00258 Flavodoxin SDY_3008 PF00849 RNA pseudouridylate synthase SDY_3009 PF04287 tRNA pseudouridine synthase C SDY_3010 PF07348 Syd protein (SUKH-2) SDY_3011 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SDY_3011 PF14489 QueF-like protein SDY_3012 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SDY_3012 PF11892 Domain of unknown function (DUF3412) SDY_3012 PF03641 Possible lysine decarboxylase SDY_3014 PF03315 Serine dehydratase beta chain SDY_3014 PF03313 Serine dehydratase alpha chain SDY_3015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SDY_3015 PF01367 5'-3' exonuclease, C-terminal SAM fold SDY_3016 PF00465 Iron-containing alcohol dehydrogenase SDY_3017 PF00596 Class II Aldolase and Adducin N-terminal domain SDY_3019 PF03400 IS1 transposase SDY_3020 PF02952 L-fucose isomerase, C-terminal domain SDY_3020 PF07882 L-fucose isomerase, second N-terminal domain SDY_3020 PF07881 L-fucose isomerase, first N-terminal domain SDY_3021 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDY_3021 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SDY_3022 PF05025 RbsD / FucU transport protein family SDY_3023 PF00455 DeoR C terminal sensor domain SDY_3023 PF08220 DeoR-like helix-turn-helix domain SDY_3024 PF18125 RlmM ferredoxin-like domain SDY_3024 PF01728 FtsJ-like methyltransferase SDY_3025 PF04241 Protein of unknown function (DUF423) SDY_3026 PF03466 LysR substrate binding domain SDY_3026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3027 PF06004 Bacterial protein of unknown function (DUF903) SDY_3028 PF00266 Aminotransferase class-V SDY_3029 PF02657 Fe-S metabolism associated domain SDY_3030 PF00899 ThiF family SDY_3031 PF06725 3D domain SDY_3031 PF03562 MltA specific insert domain SDY_3034 PF11741 AMIN domain SDY_3034 PF01520 N-acetylmuramoyl-L-alanine amidase SDY_3035 PF00583 Acetyltransferase (GNAT) family SDY_3035 PF00696 Amino acid kinase family SDY_3036 PF13538 UvrD-like helicase C-terminal domain SDY_3037 PF13361 UvrD-like helicase C-terminal domain SDY_3037 PF00580 UvrD/REP helicase N-terminal domain SDY_3037 PF12705 PD-(D/E)XK nuclease superfamily SDY_3038 PF16187 Middle or third domain of peptidase_M16 SDY_3038 PF00675 Insulinase (Peptidase family M16) SDY_3038 PF05193 Peptidase M16 inactive domain SDY_3039 PF17946 RecC C-terminal domain SDY_3040 PF07963 Prokaryotic N-terminal methylation motif SDY_3040 PF12528 Type II secretion prepilin peptidase dependent protein C SDY_3041 PF10713 Protein of unknown function (DUF2509) SDY_3042 PF07963 Prokaryotic N-terminal methylation motif SDY_3043 PF07963 Prokaryotic N-terminal methylation motif SDY_3044 PF00303 Thymidylate synthase SDY_3045 PF01790 Prolipoprotein diacylglyceryl transferase SDY_3046 PF01590 GAF domain SDY_3046 PF02896 PEP-utilising enzyme, TIM barrel domain SDY_3046 PF00391 PEP-utilising enzyme, mobile domain SDY_3046 PF05524 PEP-utilising enzyme, N-terminal SDY_3047 PF00293 NUDIX domain SDY_3048 PF02976 DNA mismatch repair enzyme MutH SDY_3049 PF03741 Integral membrane protein TerC family SDY_3050 PF06004 Bacterial protein of unknown function (DUF903) SDY_3051 PF00248 Aldo/keto reductase family SDY_3052 PF07690 Major Facilitator Superfamily SDY_3053 PF00501 AMP-binding enzyme SDY_3053 PF01553 Acyltransferase SDY_3054 PF00356 Bacterial regulatory proteins, lacI family SDY_3055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SDY_3055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SDY_3056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3056 PF03466 LysR substrate binding domain SDY_3057 PF01177 Asp/Glu/Hydantoin racemase SDY_3058 PF00083 Sugar (and other) transporter SDY_3059 PF03400 IS1 transposase SDY_3060 PF12759 InsA C-terminal domain SDY_3060 PF03811 InsA N-terminal domain SDY_3061 PF00248 Aldo/keto reductase family SDY_3062 PF06719 AraC-type transcriptional regulator N-terminus SDY_3062 PF12833 Helix-turn-helix domain SDY_3063 PF00465 Iron-containing alcohol dehydrogenase SDY_3064 PF09335 SNARE associated Golgi protein SDY_3065 PF01053 Cys/Met metabolism PLP-dependent enzyme SDY_3067 PF01618 MotA/TolQ/ExbB proton channel family SDY_3068 PF02472 Biopolymer transport protein ExbD/TolR SDY_3070 PF03350 Uncharacterized protein family, UPF0114 SDY_3071 PF03400 IS1 transposase SDY_3072 PF12759 InsA C-terminal domain SDY_3072 PF03811 InsA N-terminal domain SDY_3073 PF00248 Aldo/keto reductase family SDY_3075 PF11115 Protein of unknown function (DUF2623) SDY_3076 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SDY_3076 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SDY_3077 PF13247 4Fe-4S dicluster domain SDY_3078 PF03916 Polysulphide reductase, NrfD SDY_3079 PF00374 Nickel-dependent hydrogenase SDY_3080 PF01750 Hydrogenase maturation protease SDY_3081 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SDY_3082 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SDY_3083 PF01455 HupF/HypC family SDY_3084 PF02798 Glutathione S-transferase, N-terminal domain SDY_3085 PF03738 Glutathionylspermidine synthase preATP-grasp SDY_3085 PF05257 CHAP domain SDY_3086 PF01384 Phosphate transporter family SDY_3088 PF12759 InsA C-terminal domain SDY_3088 PF03811 InsA N-terminal domain SDY_3090 PF14535 AMP-binding enzyme C-terminal domain SDY_3090 PF00501 AMP-binding enzyme SDY_3091 PF03400 IS1 transposase SDY_3092 PF11356 Type II secretion system protein C SDY_3093 PF03958 Bacterial type II/III secretion system short domain SDY_3093 PF00263 Bacterial type II and III secretion system protein SDY_3094 PF00437 Type II/IV secretion system protein SDY_3095 PF00482 Type II secretion system (T2SS), protein F SDY_3096 PF07963 Prokaryotic N-terminal methylation motif SDY_3096 PF08334 Type II secretion system (T2SS), protein G SDY_3098 PF07963 Prokaryotic N-terminal methylation motif SDY_3098 PF02501 Type II secretion system (T2SS), protein I SDY_3099 PF07963 Prokaryotic N-terminal methylation motif SDY_3099 PF11612 Type II secretion system (T2SS), protein J SDY_3100 PF03934 Type II secretion system (T2SS), protein K SDY_3101 PF12693 GspL periplasmic domain SDY_3104 PF03811 InsA N-terminal domain SDY_3104 PF12759 InsA C-terminal domain SDY_3105 PF03400 IS1 transposase SDY_3107 PF01276 Orn/Lys/Arg decarboxylase, major domain SDY_3107 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SDY_3107 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SDY_3108 PF03825 Nucleoside H+ symporter SDY_3109 PF01464 Transglycosylase SLT domain SDY_3109 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SDY_3110 PF04362 Bacterial Fe(2+) trafficking SDY_3111 PF00633 Helix-hairpin-helix motif SDY_3111 PF10576 Iron-sulfur binding domain of endonuclease III SDY_3111 PF00730 HhH-GPD superfamily base excision DNA repair protein SDY_3111 PF14815 NUDIX domain SDY_3112 PF02390 Putative methyltransferase SDY_3113 PF04320 Protein with unknown function (DUF469) SDY_3114 PF11101 Protein of unknown function (DUF2884) SDY_3115 PF17763 Glutaminase/Asparaginase C-terminal domain SDY_3115 PF00710 Asparaginase, N-terminal SDY_3116 PF06717 Protein of unknown function (DUF1202) SDY_3117 PF06969 HemN C-terminal domain SDY_3117 PF04055 Radical SAM superfamily SDY_3118 PF01725 Ham1 family SDY_3119 PF02594 Uncharacterised ACR, YggU family COG1872 SDY_3120 PF02325 YGGT family SDY_3121 PF00437 Type II/IV secretion system protein SDY_3122 PF01168 Alanine racemase, N-terminal domain SDY_3123 PF03652 Holliday junction resolvase SDY_3124 PF02622 Uncharacterized ACR, COG1678 SDY_3125 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SDY_3125 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SDY_3126 PF04452 RNA methyltransferase SDY_3127 PF04231 Endonuclease I SDY_3128 PF17283 SprT-like zinc ribbon domain SDY_3128 PF10263 SprT-like family SDY_3129 PF00083 Sugar (and other) transporter SDY_3130 PF02773 S-adenosylmethionine synthetase, C-terminal domain SDY_3130 PF00438 S-adenosylmethionine synthetase, N-terminal domain SDY_3130 PF02772 S-adenosylmethionine synthetase, central domain SDY_3132 PF17430 Uncharacterized YqgC-like SDY_3133 PF11036 Virulence promoting factor SDY_3134 PF17810 Arginine decarboxylase helical bundle domain SDY_3134 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SDY_3134 PF17944 Arginine decarboxylase C-terminal helical extension SDY_3137 PF03400 IS1 transposase SDY_3139 PF00491 Arginase family SDY_3140 PF01435 Peptidase family M48 SDY_3141 PF02779 Transketolase, pyrimidine binding domain SDY_3141 PF00456 Transketolase, thiamine diphosphate binding domain SDY_3141 PF02780 Transketolase, C-terminal domain SDY_3142 PF03400 IS1 transposase SDY_3143 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDY_3144 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_3144 PF02378 Phosphotransferase system, EIIC SDY_3145 PF00107 Zinc-binding dehydrogenase SDY_3145 PF08240 Alcohol dehydrogenase GroES-like domain SDY_3147 PF05068 Mannitol repressor SDY_3149 PF00005 ABC transporter SDY_3155 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SDY_3155 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SDY_3156 PF00162 Phosphoglycerate kinase SDY_3157 PF01116 Fructose-bisphosphate aldolase class-II SDY_3158 PF05552 Conserved TM helix SDY_3158 PF00924 Mechanosensitive ion channel SDY_3159 PF01810 LysE type translocator SDY_3160 PF04402 Protein of unknown function (DUF541) SDY_3162 PF03400 IS1 transposase SDY_3165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3165 PF03466 LysR substrate binding domain SDY_3166 PF03400 IS1 transposase SDY_3168 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SDY_3169 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SDY_3169 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDY_3169 PF01842 ACT domain SDY_3170 PF01812 5-formyltetrahydrofolate cyclo-ligase family SDY_3171 PF05164 Cell division protein ZapA SDY_3172 PF03695 Uncharacterised protein family (UPF0149) SDY_3173 PF05195 Aminopeptidase P, N-terminal domain SDY_3173 PF00557 Metallopeptidase family M24 SDY_3174 PF01494 FAD binding domain SDY_3175 PF01494 FAD binding domain SDY_3176 PF08669 Glycine cleavage T-protein C-terminal barrel domain SDY_3176 PF01571 Aminomethyltransferase folate-binding domain SDY_3177 PF01597 Glycine cleavage H-protein SDY_3178 PF02347 Glycine cleavage system P-protein SDY_3181 PF04266 ASCH domain SDY_3182 PF03400 IS1 transposase SDY_3183 PF03006 Haemolysin-III related SDY_3184 PF01571 Aminomethyltransferase folate-binding domain SDY_3185 PF03937 Flavinator of succinate dehydrogenase SDY_3186 PF07254 Membrane-bound toxin component of toxin-antitoxin system SDY_3187 PF00258 Flavodoxin SDY_3188 PF00589 Phage integrase family SDY_3188 PF02899 Phage integrase, N-terminal SAM-like domain SDY_3189 PF10411 Disulfide bond isomerase protein N-terminus SDY_3189 PF13098 Thioredoxin-like domain SDY_3190 PF02272 DHHA1 domain SDY_3190 PF17768 RecJ OB domain SDY_3190 PF01368 DHH family SDY_3191 PF00472 RF-1 domain SDY_3191 PF03462 PCRF domain SDY_3192 PF00152 tRNA synthetases class II (D, K and N) SDY_3192 PF01336 OB-fold nucleic acid binding domain SDY_3193 PF00293 NUDIX domain SDY_3194 PF03811 InsA N-terminal domain SDY_3194 PF12759 InsA C-terminal domain SDY_3195 PF01527 Transposase SDY_3196 PF13333 Integrase core domain SDY_3196 PF13276 HTH-like domain SDY_3196 PF00665 Integrase core domain SDY_3199 PF03400 IS1 transposase SDY_3200 PF02535 ZIP Zinc transporter SDY_3202 PF03738 Glutathionylspermidine synthase preATP-grasp SDY_3203 PF06693 Protein of unknown function (DUF1190) SDY_3205 PF02321 Outer membrane efflux protein SDY_3206 PF00293 NUDIX domain SDY_3207 PF06853 Protein of unknown function (DUF1249) SDY_3208 PF00149 Calcineurin-like phosphoesterase SDY_3209 PF05728 Uncharacterised protein family (UPF0227) SDY_3210 PF01751 Toprim domain SDY_3210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3210 PF00986 DNA gyrase B subunit, carboxyl terminus SDY_3210 PF00204 DNA gyrase B SDY_3211 PF03992 Antibiotic biosynthesis monooxygenase SDY_3212 PF02525 Flavodoxin-like fold SDY_3213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3213 PF00512 His Kinase A (phospho-acceptor) domain SDY_3213 PF08521 Two-component sensor kinase N-terminal SDY_3214 PF00486 Transcriptional regulatory protein, C terminal SDY_3214 PF00072 Response regulator receiver domain SDY_3215 PF04076 Bacterial OB fold (BOF) protein SDY_3216 PF06445 GyrI-like small molecule binding domain SDY_3217 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_3218 PF03989 DNA gyrase C-terminal domain, beta-propeller SDY_3218 PF00521 DNA gyrase/topoisomerase IV, subunit A SDY_3219 PF01553 Acyltransferase SDY_3220 PF07732 Multicopper oxidase SDY_3220 PF00394 Multicopper oxidase SDY_3220 PF07731 Multicopper oxidase SDY_3222 PF04728 Lipoprotein leucine-zipper SDY_3223 PF12883 Protein of unknown function (DUF3828) SDY_3224 PF03400 IS1 transposase SDY_3225 PF12759 InsA C-terminal domain SDY_3225 PF03811 InsA N-terminal domain SDY_3226 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SDY_3227 PF04380 Membrane fusogenic activity SDY_3228 PF08971 Glycogen synthesis protein SDY_3229 PF03400 IS1 transposase SDY_3230 PF03400 IS1 transposase SDY_3231 PF12759 InsA C-terminal domain SDY_3231 PF03811 InsA N-terminal domain SDY_3233 PF03400 IS1 transposase SDY_3234 PF01145 SPFH domain / Band 7 family SDY_3234 PF15975 Flotillin SDY_3235 PF01467 Cytidylyltransferase-like SDY_3235 PF00294 pfkB family carbohydrate kinase SDY_3236 PF03710 Glutamate-ammonia ligase adenylyltransferase SDY_3236 PF08335 GlnD PII-uridylyltransferase SDY_3237 PF01928 CYTH domain SDY_3238 PF08239 Bacterial SH3 domain SDY_3239 PF01966 HD domain SDY_3239 PF01743 Poly A polymerase head domain SDY_3239 PF12627 Probable RNA and SrmB- binding site of polymerase A SDY_3241 PF02152 Dihydroneopterin aldolase SDY_3242 PF02660 Glycerol-3-phosphate acyltransferase SDY_3243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3243 PF03466 LysR substrate binding domain SDY_3244 PF03400 IS1 transposase SDY_3247 PF00939 Sodium:sulfate symporter transmembrane region SDY_3248 PF00814 Glycoprotease family SDY_3249 PF01165 Ribosomal protein S21 SDY_3250 PF08275 DNA primase catalytic core, N-terminal domain SDY_3250 PF01807 CHC2 zinc finger SDY_3250 PF08278 DNA primase DnaG DnaB-binding SDY_3250 PF10410 DnaB-helicase binding domain of primase SDY_3251 PF04545 Sigma-70, region 4 SDY_3251 PF04542 Sigma-70 region 2 SDY_3251 PF00140 Sigma-70 factor, region 1.2 SDY_3251 PF04546 Sigma-70, non-essential region SDY_3251 PF04539 Sigma-70 region 3 SDY_3251 PF03979 Sigma-70 factor, region 1.1 SDY_3252 PF03167 Uracil DNA glycosylase superfamily SDY_3254 PF04954 Siderophore-interacting protein SDY_3254 PF08021 Siderophore-interacting FAD-binding domain SDY_3255 PF03551 Transcriptional regulator PadR-like family SDY_3256 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SDY_3256 PF08447 PAS fold SDY_3258 PF01588 Putative tRNA binding domain SDY_3259 PF00356 Bacterial regulatory proteins, lacI family SDY_3261 PF03400 IS1 transposase SDY_3263 PF01204 Trehalase SDY_3265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SDY_3265 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_3266 PF01381 Helix-turn-helix SDY_3267 PF05175 Methyltransferase small domain SDY_3268 PF01863 Protein of unknown function DUF45 SDY_3270 PF03400 IS1 transposase SDY_3272 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDY_3273 PF03741 Integral membrane protein TerC family SDY_3274 PF00375 Sodium:dicarboxylate symporter family SDY_3275 PF10688 Bacterial inner membrane protein SDY_3276 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SDY_3276 PF08666 SAF domain SDY_3278 PF07690 Major Facilitator Superfamily SDY_3279 PF03400 IS1 transposase SDY_3280 PF12759 InsA C-terminal domain SDY_3280 PF03811 InsA N-terminal domain SDY_3281 PF00392 Bacterial regulatory proteins, gntR family SDY_3281 PF07729 FCD domain SDY_3282 PF09335 SNARE associated Golgi protein SDY_3283 PF13721 SecD export protein N-terminal TM region SDY_3284 PF06476 Protein of unknown function (DUF1090) SDY_3285 PF05957 Bacterial protein of unknown function (DUF883) SDY_3286 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SDY_3287 PF13997 YqjK-like protein SDY_3288 PF13276 HTH-like domain SDY_3288 PF00665 Integrase core domain SDY_3289 PF01527 Transposase SDY_3290 PF07681 DoxX SDY_3291 PF13409 Glutathione S-transferase, N-terminal domain SDY_3292 PF05656 Protein of unknown function (DUF805) SDY_3293 PF03400 IS1 transposase SDY_3295 PF12759 InsA C-terminal domain SDY_3295 PF03811 InsA N-terminal domain SDY_3296 PF03400 IS1 transposase SDY_3297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3297 PF03466 LysR substrate binding domain SDY_3298 PF17954 Quercetinase C-terminal cupin domain SDY_3298 PF02678 Pirin SDY_3300 PF03313 Serine dehydratase alpha chain SDY_3302 PF03400 IS1 transposase SDY_3303 PF03811 InsA N-terminal domain SDY_3303 PF12759 InsA C-terminal domain SDY_3304 PF03315 Serine dehydratase beta chain SDY_3304 PF03313 Serine dehydratase alpha chain SDY_3306 PF02901 Pyruvate formate lyase-like SDY_3306 PF01228 Glycine radical SDY_3307 PF00871 Acetokinase family SDY_3308 PF03222 Tryptophan/tyrosine permease family SDY_3309 PF00291 Pyridoxal-phosphate dependent enzyme SDY_3310 PF03466 LysR substrate binding domain SDY_3310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3314 PF03400 IS1 transposase SDY_3315 PF12759 InsA C-terminal domain SDY_3315 PF03811 InsA N-terminal domain SDY_3317 PF03400 IS1 transposase SDY_3318 PF02595 Glycerate kinase family SDY_3319 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SDY_3319 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SDY_3320 PF03328 HpcH/HpaI aldolase/citrate lyase family SDY_3322 PF03811 InsA N-terminal domain SDY_3322 PF12759 InsA C-terminal domain SDY_3323 PF03400 IS1 transposase SDY_3324 PF00419 Fimbrial protein SDY_3325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SDY_3326 PF04348 LppC putative lipoprotein SDY_3327 PF02021 Uncharacterised protein family UPF0102 SDY_3328 PF13580 SIS domain SDY_3329 PF04972 BON domain SDY_3331 PF13460 NAD(P)H-binding SDY_3332 PF01965 DJ-1/PfpI family SDY_3334 PF01541 GIY-YIG catalytic domain SDY_3335 PF13508 Acetyltransferase (GNAT) domain SDY_3336 PF02036 SCP-2 sterol transfer family SDY_3337 PF01136 Peptidase family U32 SDY_3338 PF01136 Peptidase family U32 SDY_3339 PF00296 Luciferase-like monooxygenase SDY_3340 PF03222 Tryptophan/tyrosine permease family SDY_3341 PF03880 DbpA RNA binding domain SDY_3341 PF00270 DEAD/DEAH box helicase SDY_3341 PF12343 Cold shock protein DEAD box A SDY_3341 PF00271 Helicase conserved C-terminal domain SDY_3342 PF07719 Tetratricopeptide repeat SDY_3342 PF13181 Tetratricopeptide repeat SDY_3343 PF03725 3' exoribonuclease family, domain 2 SDY_3343 PF00575 S1 RNA binding domain SDY_3343 PF00013 KH domain SDY_3343 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SDY_3343 PF01138 3' exoribonuclease family, domain 1 SDY_3344 PF00312 Ribosomal protein S15 SDY_3345 PF16198 tRNA pseudouridylate synthase B C-terminal domain SDY_3345 PF09157 Pseudouridine synthase II TruB, C-terminal SDY_3345 PF01509 TruB family pseudouridylate synthase (N terminal domain) SDY_3346 PF02033 Ribosome-binding factor A SDY_3347 PF04760 Translation initiation factor IF-2, N-terminal region SDY_3347 PF11987 Translation-initiation factor 2 SDY_3347 PF08364 Bacterial translation initiation factor IF-2 associated region SDY_3347 PF00009 Elongation factor Tu GTP binding domain SDY_3348 PF08529 NusA N-terminal domain SDY_3348 PF00575 S1 RNA binding domain SDY_3348 PF13184 NusA-like KH domain SDY_3349 PF17384 RimP C-terminal SH3 domain SDY_3349 PF02576 RimP N-terminal domain SDY_3351 PF00764 Arginosuccinate synthase SDY_3352 PF00884 Sulfatase SDY_3356 PF03840 Preprotein translocase SecG subunit SDY_3357 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SDY_3357 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SDY_3357 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SDY_3357 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SDY_3358 PF00809 Pterin binding enzyme SDY_3359 PF01434 Peptidase family M41 SDY_3359 PF00004 ATPase family associated with various cellular activities (AAA) SDY_3359 PF17862 AAA+ lid domain SDY_3359 PF06480 FtsH Extracellular SDY_3360 PF01728 FtsJ-like methyltransferase SDY_3361 PF01985 CRS1 / YhbY (CRM) domain SDY_3362 PF03449 Transcription elongation factor, N-terminal SDY_3362 PF01272 Transcription elongation factor, GreA/GreB, C-term SDY_3363 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SDY_3364 PF01018 GTP1/OBG SDY_3364 PF01926 50S ribosome-binding GTPase SDY_3365 PF00892 EamA-like transporter family SDY_3366 PF01016 Ribosomal L27 protein SDY_3367 PF00829 Ribosomal prokaryotic L21 protein SDY_3368 PF00348 Polyprenyl synthetase SDY_3369 PF13693 Winged helix-turn-helix DNA-binding SDY_3370 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SDY_3371 PF01722 BolA-like protein SDY_3372 PF13466 STAS domain SDY_3373 PF05494 MlaC protein SDY_3374 PF02470 MlaD protein SDY_3375 PF02405 Permease MlaE SDY_3376 PF00005 ABC transporter SDY_3377 PF01699 Sodium/calcium exchanger protein SDY_3378 PF01380 SIS domain SDY_3378 PF00571 CBS domain SDY_3380 PF06835 Lipopolysaccharide-assembly, LptC-related SDY_3381 PF03968 OstA-like protein SDY_3382 PF00005 ABC transporter SDY_3382 PF12399 Branched-chain amino acid ATP-binding cassette transporter SDY_3383 PF04963 Sigma-54 factor, core binding domain SDY_3383 PF04552 Sigma-54, DNA binding domain SDY_3383 PF00309 Sigma-54 factor, Activator interacting domain (AID) SDY_3384 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SDY_3385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDY_3386 PF03668 P-loop ATPase protein family SDY_3387 PF00381 PTS HPr component phosphorylation site SDY_3388 PF10707 PhoP regulatory network protein YrbL SDY_3389 PF00912 Transglycosylase SDY_3391 PF01627 Hpt domain SDY_3391 PF00072 Response regulator receiver domain SDY_3391 PF00989 PAS fold SDY_3391 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3391 PF00512 His Kinase A (phospho-acceptor) domain SDY_3391 PF18415 Histidine kinase receptor ArcB trans-membrane domain SDY_3392 PF04055 Radical SAM superfamily SDY_3392 PF16199 Radical_SAM C-terminal domain SDY_3393 PF04898 Glutamate synthase central domain SDY_3393 PF01493 GXGXG motif SDY_3393 PF01645 Conserved region in glutamate synthase SDY_3393 PF00310 Glutamine amidotransferases class-II SDY_3394 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SDY_3394 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_3395 PF06250 YhcG PDDEXK nuclease domain SDY_3395 PF17761 DUF1016 N-terminal domain SDY_3396 PF04074 YhcH/YjgK/YiaL SDY_3397 PF00480 ROK family SDY_3398 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SDY_3399 PF07690 Major Facilitator Superfamily SDY_3400 PF00701 Dihydrodipicolinate synthetase family SDY_3401 PF00392 Bacterial regulatory proteins, gntR family SDY_3401 PF07729 FCD domain SDY_3403 PF03606 C4-dicarboxylate anaerobic carrier SDY_3404 PF04386 Stringent starvation protein B SDY_3405 PF02798 Glutathione S-transferase, N-terminal domain SDY_3405 PF00043 Glutathione S-transferase, C-terminal domain SDY_3406 PF00380 Ribosomal protein S9/S16 SDY_3407 PF00572 Ribosomal protein L13 SDY_3408 PF03969 AFG1-like ATPase SDY_3409 PF06295 Protein of unknown function (DUF1043) SDY_3410 PF13180 PDZ domain SDY_3410 PF00595 PDZ domain SDY_3411 PF13180 PDZ domain SDY_3412 PF00056 lactate/malate dehydrogenase, NAD binding domain SDY_3412 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SDY_3413 PF02863 Arginine repressor, C-terminal domain SDY_3413 PF01316 Arginine repressor, DNA binding domain SDY_3414 PF07338 Protein of unknown function (DUF1471) SDY_3415 PF01337 Barstar (barnase inhibitor) SDY_3416 PF04632 Fusaric acid resistance protein family SDY_3417 PF13533 Biotin-lipoyl like SDY_3418 PF07869 Protein of unknown function (DUF1656) SDY_3419 PF03466 LysR substrate binding domain SDY_3419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3420 PF01523 Putative modulator of DNA gyrase SDY_3421 PF13502 AsmA-like C-terminal region SDY_3421 PF13116 Protein of unknown function SDY_3422 PF00575 S1 RNA binding domain SDY_3422 PF10150 Ribonuclease E/G family SDY_3423 PF02545 Maf-like protein SDY_3424 PF04093 rod shape-determining protein MreD SDY_3425 PF04085 rod shape-determining protein MreC SDY_3427 PF00563 EAL domain SDY_3427 PF17157 Gammaproteobacterial periplasmic sensor domain SDY_3427 PF00990 Diguanylate cyclase, GGDEF domain SDY_3428 PF08240 Alcohol dehydrogenase GroES-like domain SDY_3428 PF00107 Zinc-binding dehydrogenase SDY_3432 PF00364 Biotin-requiring enzyme SDY_3433 PF02785 Biotin carboxylase C-terminal domain SDY_3433 PF00289 Biotin carboxylase, N-terminal domain SDY_3433 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDY_3434 PF06196 Protein of unknown function (DUF997) SDY_3435 PF00474 Sodium:solute symporter family SDY_3437 PF01207 Dihydrouridine synthase (Dus) SDY_3438 PF02954 Bacterial regulatory protein, Fis family SDY_3439 PF01555 DNA methylase SDY_3440 PF12759 InsA C-terminal domain SDY_3440 PF03811 InsA N-terminal domain SDY_3441 PF03400 IS1 transposase SDY_3442 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_3442 PF00529 HlyD membrane-fusion protein of T1SS SDY_3444 PF03811 InsA N-terminal domain SDY_3444 PF12759 InsA C-terminal domain SDY_3445 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_3447 PF00528 Binding-protein-dependent transport system inner membrane component SDY_3456 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_3457 PF07369 Protein of unknown function (DUF1488) SDY_3458 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SDY_3458 PF01488 Shikimate / quinate 5-dehydrogenase SDY_3458 PF08501 Shikimate dehydrogenase substrate binding domain SDY_3459 PF01300 Telomere recombination SDY_3460 PF01396 Topoisomerase DNA binding C4 zinc finger SDY_3461 PF04361 Protein of unknown function (DUF494) SDY_3462 PF02481 DNA recombination-mediator protein A SDY_3462 PF17782 DprA winged helix domain SDY_3463 PF01327 Polypeptide deformylase SDY_3464 PF00551 Formyl transferase SDY_3464 PF02911 Formyl transferase, C-terminal domain SDY_3465 PF01189 16S rRNA methyltransferase RsmB/F SDY_3465 PF01029 NusB family SDY_3466 PF02080 TrkA-C domain SDY_3466 PF02254 TrkA-N domain SDY_3468 PF13411 MerR HTH family regulatory protein SDY_3469 PF09350 Domain of unknown function (DUF1992) SDY_3470 PF01196 Ribosomal protein L17 SDY_3471 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SDY_3471 PF01000 RNA polymerase Rpb3/RpoA insert domain SDY_3471 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SDY_3472 PF01479 S4 domain SDY_3472 PF00163 Ribosomal protein S4/S9 N-terminal domain SDY_3473 PF00411 Ribosomal protein S11 SDY_3474 PF00416 Ribosomal protein S13/S18 SDY_3475 PF00444 Ribosomal protein L36 SDY_3476 PF00344 SecY translocase SDY_3477 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SDY_3478 PF00327 Ribosomal protein L30p/L7e SDY_3479 PF03719 Ribosomal protein S5, C-terminal domain SDY_3479 PF00333 Ribosomal protein S5, N-terminal domain SDY_3480 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SDY_3481 PF00347 Ribosomal protein L6 SDY_3482 PF00410 Ribosomal protein S8 SDY_3483 PF00253 Ribosomal protein S14p/S29e SDY_3484 PF00281 Ribosomal protein L5 SDY_3484 PF00673 ribosomal L5P family C-terminus SDY_3485 PF00467 KOW motif SDY_3485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SDY_3486 PF00238 Ribosomal protein L14p/L23e SDY_3487 PF00366 Ribosomal protein S17 SDY_3488 PF00831 Ribosomal L29 protein SDY_3489 PF00252 Ribosomal protein L16p/L10e SDY_3490 PF07650 KH domain SDY_3490 PF00189 Ribosomal protein S3, C-terminal domain SDY_3491 PF00237 Ribosomal protein L22p/L17e SDY_3492 PF00203 Ribosomal protein S19 SDY_3493 PF03947 Ribosomal Proteins L2, C-terminal domain SDY_3493 PF00181 Ribosomal Proteins L2, RNA binding domain SDY_3494 PF00276 Ribosomal protein L23 SDY_3495 PF00573 Ribosomal protein L4/L1 family SDY_3496 PF00297 Ribosomal protein L3 SDY_3497 PF00338 Ribosomal protein S10p/S20e SDY_3498 PF00210 Ferritin-like domain SDY_3499 PF04324 BFD-like [2Fe-2S] binding domain SDY_3500 PF03143 Elongation factor Tu C-terminal domain SDY_3500 PF03144 Elongation factor Tu domain 2 SDY_3500 PF00009 Elongation factor Tu GTP binding domain SDY_3501 PF03144 Elongation factor Tu domain 2 SDY_3501 PF00679 Elongation factor G C-terminus SDY_3501 PF14492 Elongation Factor G, domain II SDY_3501 PF00009 Elongation factor Tu GTP binding domain SDY_3501 PF03764 Elongation factor G, domain IV SDY_3502 PF00177 Ribosomal protein S7p/S5e SDY_3503 PF00164 Ribosomal protein S12/S23 SDY_3504 PF04077 DsrH like protein SDY_3505 PF02635 DsrE/DsrF-like family SDY_3506 PF02635 DsrE/DsrF-like family SDY_3507 PF13309 HTH domain SDY_3507 PF08348 YheO-like PAS domain SDY_3508 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SDY_3508 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDY_3509 PF04102 SlyX SDY_3510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDY_3511 PF09526 Probable metal-binding protein (DUF2387) SDY_3512 PF02254 TrkA-N domain SDY_3512 PF00999 Sodium/hydrogen exchanger family SDY_3513 PF02525 Flavodoxin-like fold SDY_3514 PF00005 ABC transporter SDY_3514 PF12848 ABC transporter SDY_3515 PF00561 alpha/beta hydrolase fold SDY_3516 PF06794 Uncharacterised protein family (UPF0270) SDY_3518 PF02566 OsmC-like protein SDY_3519 PF00027 Cyclic nucleotide-binding domain SDY_3519 PF13545 Crp-like helix-turn-helix domain SDY_3520 PF12805 FUSC-like inner membrane protein yccS SDY_3521 PF00202 Aminotransferase class-III SDY_3522 PF00117 Glutamine amidotransferase class-I SDY_3523 PF02661 Fic/DOC family SDY_3524 PF10832 Protein of unknown function (DUF2559) SDY_3525 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SDY_3526 PF07690 Major Facilitator Superfamily SDY_3527 PF04324 BFD-like [2Fe-2S] binding domain SDY_3527 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SDY_3527 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SDY_3527 PF18267 Rubredoxin NAD+ reductase C-terminal domain SDY_3527 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_3528 PF13806 Rieske-like [2Fe-2S] domain SDY_3529 PF01226 Formate/nitrite transporter SDY_3530 PF10414 Sirohaem synthase dimerisation region SDY_3530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SDY_3530 PF14824 Sirohaem biosynthesis protein central SDY_3531 PF03400 IS1 transposase SDY_3532 PF00282 Pyridoxal-dependent decarboxylase conserved domain SDY_3533 PF12833 Helix-turn-helix domain SDY_3535 PF03400 IS1 transposase SDY_3537 PF00873 AcrB/AcrD/AcrF family SDY_3538 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_3538 PF00529 HlyD membrane-fusion protein of T1SS SDY_3539 PF00196 Bacterial regulatory proteins, luxR family SDY_3540 PF12759 InsA C-terminal domain SDY_3540 PF03811 InsA N-terminal domain SDY_3541 PF03400 IS1 transposase SDY_3542 PF03729 Short repeat of unknown function (DUF308) SDY_3543 PF06411 HdeA/HdeB family SDY_3544 PF06411 HdeA/HdeB family SDY_3546 PF03400 IS1 transposase SDY_3547 PF00005 ABC transporter SDY_3548 PF01032 FecCD transport family SDY_3550 PF06228 Haem utilisation ChuX/HutX SDY_3552 PF01497 Periplasmic binding protein SDY_3554 PF07715 TonB-dependent Receptor Plug Domain SDY_3554 PF00593 TonB dependent receptor SDY_3555 PF05171 Haemin-degrading HemS.ChuX domain SDY_3556 PF00196 Bacterial regulatory proteins, luxR family SDY_3557 PF03843 Outer membrane lipoprotein Slp family SDY_3558 PF03400 IS1 transposase SDY_3559 PF03960 ArsC family SDY_3560 PF02040 Arsenical pump membrane protein SDY_3561 PF01022 Bacterial regulatory protein, arsR family SDY_3562 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_3562 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDY_3563 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SDY_3564 PF01432 Peptidase family M3 SDY_3565 PF04445 Putative SAM-dependent methyltransferase SDY_3567 PF00582 Universal stress protein family SDY_3568 PF10625 Universal stress protein B (UspB) SDY_3569 PF01384 Phosphate transporter family SDY_3574 PF00343 Carbohydrate phosphorylase SDY_3575 PF00534 Glycosyl transferases group 1 SDY_3575 PF08323 Starch synthase catalytic domain SDY_3576 PF00483 Nucleotidyl transferase SDY_3577 PF00128 Alpha amylase, catalytic domain SDY_3577 PF18390 Glycogen debranching enzyme C-terminal domain SDY_3577 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDY_3578 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SDY_3578 PF00128 Alpha amylase, catalytic domain SDY_3578 PF02806 Alpha amylase, C-terminal all-beta domain SDY_3579 PF02774 Semialdehyde dehydrogenase, dimerisation domain SDY_3579 PF01118 Semialdehyde dehydrogenase, NAD binding domain SDY_3580 PF01914 MarC family integral membrane protein SDY_3583 PF03400 IS1 transposase SDY_3584 PF03811 InsA N-terminal domain SDY_3584 PF12759 InsA C-terminal domain SDY_3585 PF03400 IS1 transposase SDY_3586 PF00570 HRDC domain SDY_3586 PF00271 Helicase conserved C-terminal domain SDY_3586 PF00270 DEAD/DEAH box helicase SDY_3586 PF09382 RQC domain SDY_3586 PF16124 RecQ zinc-binding SDY_3587 PF02447 GntP family permease SDY_3588 PF01202 Shikimate kinase SDY_3589 PF00356 Bacterial regulatory proteins, lacI family SDY_3589 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SDY_3590 PF17954 Quercetinase C-terminal cupin domain SDY_3590 PF02678 Pirin SDY_3591 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SDY_3591 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SDY_3592 PF00583 Acetyltransferase (GNAT) family SDY_3596 PF10956 Protein of unknown function (DUF2756) SDY_3599 PF00528 Binding-protein-dependent transport system inner membrane component SDY_3600 PF00528 Binding-protein-dependent transport system inner membrane component SDY_3601 PF13416 Bacterial extracellular solute-binding protein SDY_3603 PF00005 ABC transporter SDY_3604 PF12399 Branched-chain amino acid ATP-binding cassette transporter SDY_3604 PF00005 ABC transporter SDY_3605 PF11862 Domain of unknown function (DUF3382) SDY_3605 PF02653 Branched-chain amino acid transport system / permease component SDY_3606 PF02653 Branched-chain amino acid transport system / permease component SDY_3607 PF13458 Periplasmic binding protein SDY_3608 PF03400 IS1 transposase SDY_3609 PF12759 InsA C-terminal domain SDY_3609 PF03811 InsA N-terminal domain SDY_3610 PF12568 Acetyltransferase (GNAT) domain, PanZ SDY_3611 PF13458 Periplasmic binding protein SDY_3612 PF04542 Sigma-70 region 2 SDY_3612 PF04545 Sigma-70, region 4 SDY_3613 PF18075 FtsX extracellular domain SDY_3613 PF02687 FtsX-like permease family SDY_3614 PF00005 ABC transporter SDY_3615 PF00448 SRP54-type protein, GTPase domain SDY_3615 PF02881 SRP54-type protein, helical bundle domain SDY_3617 PF06611 Protein of unknown function (DUF1145) SDY_3618 PF10694 Protein of unknown function (DUF2500) SDY_3620 PF00403 Heavy-metal-associated domain SDY_3621 PF01206 Sulfurtransferase TusA SDY_3622 PF02592 Putative vitamin uptake transporter SDY_3623 PF08786 DcrB SDY_3626 PF03400 IS1 transposase SDY_3627 PF03400 IS1 transposase SDY_3628 PF03811 InsA N-terminal domain SDY_3628 PF12759 InsA C-terminal domain SDY_3629 PF00109 Beta-ketoacyl synthase, N-terminal domain SDY_3629 PF02801 Beta-ketoacyl synthase, C-terminal domain SDY_3630 PF01648 4'-phosphopantetheinyl transferase superfamily SDY_3631 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_3632 PF00528 Binding-protein-dependent transport system inner membrane component SDY_3633 PF00528 Binding-protein-dependent transport system inner membrane component SDY_3634 PF00005 ABC transporter SDY_3635 PF00005 ABC transporter SDY_3636 PF01402 Ribbon-helix-helix protein, copG family SDY_3636 PF08753 NikR C terminal nickel binding domain SDY_3639 PF03400 IS1 transposase SDY_3642 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_3644 PF12759 InsA C-terminal domain SDY_3644 PF03811 InsA N-terminal domain SDY_3645 PF03400 IS1 transposase SDY_3649 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SDY_3649 PF01266 FAD dependent oxidoreductase SDY_3650 PF00581 Rhodanese-like domain SDY_3651 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SDY_3651 PF01694 Rhomboid family SDY_3652 PF08220 DeoR-like helix-turn-helix domain SDY_3652 PF00455 DeoR C terminal sensor domain SDY_3653 PF01139 tRNA-splicing ligase RtcB SDY_3654 PF06956 Regulator of RNA terminal phosphate cyclase SDY_3654 PF00158 Sigma-54 interaction domain SDY_3655 PF01137 RNA 3'-terminal phosphate cyclase SDY_3655 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SDY_3658 PF00196 Bacterial regulatory proteins, luxR family SDY_3658 PF17874 MalT-like TPR region SDY_3659 PF00343 Carbohydrate phosphorylase SDY_3660 PF02446 4-alpha-glucanotransferase SDY_3661 PF02447 GntP family permease SDY_3662 PF01106 NifU-like domain SDY_3662 PF01521 Iron-sulphur cluster biosynthesis SDY_3663 PF00561 alpha/beta hydrolase fold SDY_3665 PF04754 Putative transposase, YhgA-like SDY_3666 PF09012 FeoC like transcriptional regulator SDY_3667 PF02421 Ferrous iron transport protein B SDY_3667 PF07664 Ferrous iron transport protein B C terminus SDY_3667 PF07670 Nucleoside recognition SDY_3667 PF17910 FeoB cytosolic helical domain SDY_3668 PF04023 FeoA domain SDY_3669 PF00575 S1 RNA binding domain SDY_3669 PF16921 Tex protein YqgF-like domain SDY_3669 PF09371 Tex-like protein N-terminal domain SDY_3669 PF17674 HHH domain SDY_3670 PF03449 Transcription elongation factor, N-terminal SDY_3670 PF01272 Transcription elongation factor, GreA/GreB, C-term SDY_3671 PF00486 Transcriptional regulatory protein, C terminal SDY_3671 PF00072 Response regulator receiver domain SDY_3672 PF00512 His Kinase A (phospho-acceptor) domain SDY_3672 PF00672 HAMP domain SDY_3672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3673 PF01293 Phosphoenolpyruvate carboxykinase SDY_3674 PF13687 Domain of unknown function (DUF4153) SDY_3677 PF01430 Hsp33 protein SDY_3678 PF01479 S4 domain SDY_3679 PF13419 Haloacid dehalogenase-like hydrolase SDY_3680 PF07095 Intracellular growth attenuator protein IgaA SDY_3681 PF00293 NUDIX domain SDY_3682 PF17092 Penicillin-binding protein OB-like domain SDY_3682 PF00912 Transglycosylase SDY_3682 PF00905 Penicillin binding protein transpeptidase domain SDY_3685 PF05137 Fimbrial assembly protein (PilN) SDY_3687 PF10748 DNA utilization proteins HofP SDY_3689 PF01202 Shikimate kinase SDY_3690 PF01761 3-dehydroquinate synthase SDY_3691 PF05036 Sporulation related domain SDY_3692 PF02086 D12 class N6 adenine-specific DNA methyltransferase SDY_3693 PF00834 Ribulose-phosphate 3 epimerase family SDY_3694 PF13419 Haloacid dehalogenase-like hydrolase SDY_3695 PF00579 tRNA synthetases class I (W and Y) SDY_3696 PF14503 YhfZ C-terminal domain SDY_3696 PF14502 Helix-turn-helix domain SDY_3698 PF01527 Transposase SDY_3699 PF00665 Integrase core domain SDY_3699 PF13276 HTH-like domain SDY_3701 PF01676 Metalloenzyme superfamily SDY_3702 PF02126 Phosphotriesterase family SDY_3704 PF03400 IS1 transposase SDY_3706 PF13247 4Fe-4S dicluster domain SDY_3707 PF00155 Aminotransferase class I and II SDY_3709 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SDY_3710 PF12833 Helix-turn-helix domain SDY_3720 PF02142 MGS-like domain SDY_3720 PF01808 AICARFT/IMPCHase bienzyme SDY_3721 PF02844 Phosphoribosylglycinamide synthetase, N domain SDY_3721 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SDY_3721 PF02843 Phosphoribosylglycinamide synthetase, C domain SDY_3722 PF00072 Response regulator receiver domain SDY_3722 PF02954 Bacterial regulatory protein, Fis family SDY_3722 PF00158 Sigma-54 interaction domain SDY_3723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3723 PF00512 His Kinase A (phospho-acceptor) domain SDY_3724 PF13801 Heavy-metal resistance SDY_3725 PF07356 Protein of unknown function (DUF1481) SDY_3726 PF00216 Bacterial DNA-binding protein SDY_3727 PF04222 Protein of unknown function (DUF416) SDY_3728 PF04493 Endonuclease V SDY_3729 PF01208 Uroporphyrinogen decarboxylase (URO-D) SDY_3730 PF00293 NUDIX domain SDY_3730 PF09297 NADH pyrophosphatase zinc ribbon domain SDY_3731 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SDY_3732 PF13667 ThiC-associated domain SDY_3732 PF01964 Radical SAM ThiC family SDY_3733 PF02581 Thiamine monophosphate synthase SDY_3734 PF00899 ThiF family SDY_3735 PF02597 ThiS family SDY_3736 PF05690 Thiazole biosynthesis protein ThiG SDY_3737 PF04055 Radical SAM superfamily SDY_3737 PF06968 Biotin and Thiamin Synthesis associated domain SDY_3738 PF03400 IS1 transposase SDY_3740 PF04983 RNA polymerase Rpb1, domain 3 SDY_3740 PF05000 RNA polymerase Rpb1, domain 4 SDY_3740 PF04998 RNA polymerase Rpb1, domain 5 SDY_3740 PF04997 RNA polymerase Rpb1, domain 1 SDY_3740 PF00623 RNA polymerase Rpb1, domain 2 SDY_3741 PF00562 RNA polymerase Rpb2, domain 6 SDY_3741 PF04561 RNA polymerase Rpb2, domain 2 SDY_3741 PF10385 RNA polymerase beta subunit external 1 domain SDY_3741 PF04560 RNA polymerase Rpb2, domain 7 SDY_3741 PF04563 RNA polymerase beta subunit SDY_3741 PF04565 RNA polymerase Rpb2, domain 3 SDY_3742 PF00542 Ribosomal protein L7/L12 C-terminal domain SDY_3742 PF16320 Ribosomal protein L7/L12 dimerisation domain SDY_3743 PF00466 Ribosomal protein L10 SDY_3744 PF00687 Ribosomal protein L1p/L10e family SDY_3745 PF03946 Ribosomal protein L11, N-terminal domain SDY_3745 PF00298 Ribosomal protein L11, RNA binding domain SDY_3746 PF00467 KOW motif SDY_3746 PF02357 Transcription termination factor nusG SDY_3747 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SDY_3748 PF03143 Elongation factor Tu C-terminal domain SDY_3748 PF00009 Elongation factor Tu GTP binding domain SDY_3748 PF03144 Elongation factor Tu domain 2 SDY_3754 PF00485 Phosphoribulokinase / Uridine kinase family SDY_3755 PF02237 Biotin protein ligase C terminal domain SDY_3755 PF08279 HTH domain SDY_3755 PF03099 Biotin/lipoate A/B protein ligase family SDY_3756 PF01565 FAD binding domain SDY_3756 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SDY_3761 PF01177 Asp/Glu/Hydantoin racemase SDY_3762 PF00593 TonB dependent receptor SDY_3762 PF07715 TonB-dependent Receptor Plug Domain SDY_3763 PF05958 tRNA (Uracil-5-)-methyltransferase SDY_3764 PF07226 Protein of unknown function (DUF1422) SDY_3765 PF00440 Bacterial regulatory proteins, tetR family SDY_3767 PF03400 IS1 transposase SDY_3772 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SDY_3773 PF01340 Met Apo-repressor, MetJ SDY_3774 PF01053 Cys/Met metabolism PLP-dependent enzyme SDY_3775 PF00696 Amino acid kinase family SDY_3775 PF00742 Homoserine dehydrogenase SDY_3775 PF03447 Homoserine dehydrogenase, NAD binding domain SDY_3776 PF02219 Methylenetetrahydrofolate reductase SDY_3778 PF00892 EamA-like transporter family SDY_3779 PF06940 Domain of unknown function (DUF1287) SDY_3780 PF00465 Iron-containing alcohol dehydrogenase SDY_3781 PF00923 Transaldolase/Fructose-6-phosphate aldolase SDY_3782 PF00391 PEP-utilising enzyme, mobile domain SDY_3782 PF02896 PEP-utilising enzyme, TIM barrel domain SDY_3782 PF05524 PEP-utilising enzyme, N-terminal SDY_3782 PF00381 PTS HPr component phosphorylation site SDY_3782 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDY_3785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_3786 PF02901 Pyruvate formate lyase-like SDY_3786 PF01228 Glycine radical SDY_3787 PF04055 Radical SAM superfamily SDY_3788 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_3789 PF12833 Helix-turn-helix domain SDY_3790 PF00884 Sulfatase SDY_3791 PF00311 Phosphoenolpyruvate carboxylase SDY_3792 PF07687 Peptidase dimerisation domain SDY_3792 PF01546 Peptidase family M20/M25/M40 SDY_3793 PF02774 Semialdehyde dehydrogenase, dimerisation domain SDY_3793 PF01118 Semialdehyde dehydrogenase, NAD binding domain SDY_3794 PF00696 Amino acid kinase family SDY_3795 PF00206 Lyase SDY_3795 PF14698 Argininosuccinate lyase C-terminal SDY_3796 PF03466 LysR substrate binding domain SDY_3796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3797 PF07992 Pyridine nucleotide-disulphide oxidoreductase SDY_3797 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SDY_3799 PF03400 IS1 transposase SDY_3800 PF03527 RHS protein SDY_3800 PF05593 RHS Repeat SDY_3800 PF14220 Domain of unknown function (DUF4329) SDY_3801 PF01197 Ribosomal protein L31 SDY_3802 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SDY_3802 PF18074 Primosomal protein N C-terminal domain SDY_3802 PF00270 DEAD/DEAH box helicase SDY_3802 PF00271 Helicase conserved C-terminal domain SDY_3802 PF17764 3′ DNA-binding domain (3′BD) SDY_3803 PF00356 Bacterial regulatory proteins, lacI family SDY_3804 PF05036 Sporulation related domain SDY_3805 PF00227 Proteasome subunit SDY_3806 PF10431 C-terminal, D2-small domain, of ClpB protein SDY_3806 PF07724 AAA domain (Cdc48 subfamily) SDY_3806 PF00004 ATPase family associated with various cellular activities (AAA) SDY_3807 PF01040 UbiA prenyltransferase family SDY_3808 PF03737 Aldolase/RraA SDY_3809 PF03400 IS1 transposase SDY_3811 PF03811 InsA N-terminal domain SDY_3811 PF12759 InsA C-terminal domain SDY_3812 PF03400 IS1 transposase SDY_3813 PF01527 Transposase SDY_3816 PF06005 Cell division protein ZapB SDY_3817 PF00230 Major intrinsic protein SDY_3818 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDY_3818 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SDY_3819 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SDY_3820 PF00970 Oxidoreductase FAD-binding domain SDY_3820 PF00175 Oxidoreductase NAD-binding domain SDY_3821 PF00582 Universal stress protein family SDY_3822 PF04175 Protein of unknown function (DUF406) SDY_3823 PF03400 IS1 transposase SDY_3824 PF05656 Protein of unknown function (DUF805) SDY_3825 PF07305 Protein of unknown function (DUF1454) SDY_3826 PF00121 Triosephosphate isomerase SDY_3827 PF03400 IS1 transposase SDY_3828 PF03811 InsA N-terminal domain SDY_3828 PF12759 InsA C-terminal domain SDY_3831 PF00365 Phosphofructokinase SDY_3832 PF01545 Cation efflux family SDY_3832 PF16916 Dimerisation domain of Zinc Transporter SDY_3833 PF07813 LTXXQ motif family protein SDY_3834 PF00072 Response regulator receiver domain SDY_3834 PF00486 Transcriptional regulatory protein, C terminal SDY_3835 PF16527 Two-component sensor protein CpxA, periplasmic domain SDY_3835 PF00672 HAMP domain SDY_3835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3835 PF00512 His Kinase A (phospho-acceptor) domain SDY_3836 PF03475 3-alpha domain SDY_3836 PF03473 MOSC domain SDY_3837 PF03812 2-keto-3-deoxygluconate permease SDY_3838 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SDY_3838 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SDY_3839 PF06379 L-rhamnose-proton symport protein (RhaT) SDY_3840 PF02311 AraC-like ligand binding domain SDY_3840 PF12833 Helix-turn-helix domain SDY_3841 PF12833 Helix-turn-helix domain SDY_3841 PF02311 AraC-like ligand binding domain SDY_3842 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SDY_3842 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SDY_3844 PF00596 Class II Aldolase and Adducin N-terminal domain SDY_3845 PF05336 L-rhamnose mutarotase SDY_3847 PF12889 Protein of unknown function (DUF3829) SDY_3848 PF02634 FdhD/NarQ family SDY_3850 PF09163 Formate dehydrogenase N, transmembrane SDY_3850 PF13247 4Fe-4S dicluster domain SDY_3851 PF01292 Prokaryotic cytochrome b561 SDY_3852 PF04216 Protein involved in formate dehydrogenase formation SDY_3853 PF03400 IS1 transposase SDY_3854 PF12759 InsA C-terminal domain SDY_3854 PF03811 InsA N-terminal domain SDY_3855 PF00583 Acetyltransferase (GNAT) family SDY_3855 PF09500 Putative thioesterase (yiiD_Cterm) SDY_3856 PF02580 D-Tyr-tRNA(Tyr) deacylase SDY_3857 PF03631 Virulence factor BrkB SDY_3858 PF13419 Haloacid dehalogenase-like hydrolase SDY_3862 PF01527 Transposase SDY_3867 PF07690 Major Facilitator Superfamily SDY_3867 PF00083 Sugar (and other) transporter SDY_3868 PF03811 InsA N-terminal domain SDY_3868 PF12759 InsA C-terminal domain SDY_3869 PF03400 IS1 transposase SDY_3871 PF13006 Insertion element 4 transposase N-terminal SDY_3871 PF01609 Transposase DDE domain SDY_3872 PF00009 Elongation factor Tu GTP binding domain SDY_3872 PF03144 Elongation factor Tu domain 2 SDY_3872 PF00679 Elongation factor G C-terminus SDY_3873 PF03951 Glutamine synthetase, beta-Grasp domain SDY_3873 PF00120 Glutamine synthetase, catalytic domain SDY_3874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_3874 PF00512 His Kinase A (phospho-acceptor) domain SDY_3874 PF00989 PAS fold SDY_3875 PF02954 Bacterial regulatory protein, Fis family SDY_3875 PF00158 Sigma-54 interaction domain SDY_3875 PF00072 Response regulator receiver domain SDY_3876 PF04055 Radical SAM superfamily SDY_3876 PF06969 HemN C-terminal domain SDY_3877 PF04220 Der GTPase activator (YihI) SDY_3878 PF01926 50S ribosome-binding GTPase SDY_3879 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SDY_3879 PF01612 3'-5' exonuclease SDY_3879 PF00476 DNA polymerase family A SDY_3879 PF01367 5'-3' exonuclease, C-terminal SAM fold SDY_3880 PF01553 Acyltransferase SDY_3881 PF03400 IS1 transposase SDY_3883 PF03400 IS1 transposase SDY_3884 PF12759 InsA C-terminal domain SDY_3884 PF03811 InsA N-terminal domain SDY_3885 PF01323 DSBA-like thioredoxin domain SDY_3886 PF01636 Phosphotransferase enzyme family SDY_3887 PF06288 Protein of unknown function (DUF1040) SDY_3888 PF12804 MobA-like NTP transferase domain SDY_3889 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SDY_3895 PF12724 Flavodoxin domain SDY_3896 PF02386 Cation transport protein SDY_3897 PF01205 Uncharacterized protein family UPF0029 SDY_3897 PF09186 Domain of unknown function (DUF1949) SDY_3898 PF00557 Metallopeptidase family M24 SDY_3899 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SDY_3899 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SDY_3899 PF00378 Enoyl-CoA hydratase/isomerase SDY_3900 PF00108 Thiolase, N-terminal domain SDY_3900 PF02803 Thiolase, C-terminal domain SDY_3901 PF00970 Oxidoreductase FAD-binding domain SDY_3901 PF00175 Oxidoreductase NAD-binding domain SDY_3902 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SDY_3903 PF02357 Transcription termination factor nusG SDY_3905 PF00902 Sec-independent protein translocase protein (TatC) SDY_3907 PF02416 mttA/Hcf106 family SDY_3908 PF03109 ABC1 family SDY_3909 PF02036 SCP-2 sterol transfer family SDY_3910 PF01209 ubiE/COQ5 methyltransferase family SDY_3911 PF02646 RmuC family SDY_3912 PF01048 Phosphorylase superfamily SDY_3913 PF01738 Dienelactone hydrolase family SDY_3914 PF01717 Cobalamin-independent synthase, Catalytic domain SDY_3914 PF08267 Cobalamin-independent synthase, N-terminal domain SDY_3915 PF03466 LysR substrate binding domain SDY_3915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3916 PF00892 EamA-like transporter family SDY_3918 PF12146 Serine aminopeptidase, S33 SDY_3919 PF01810 LysE type translocator SDY_3920 PF01810 LysE type translocator SDY_3921 PF09382 RQC domain SDY_3921 PF16124 RecQ zinc-binding SDY_3921 PF00570 HRDC domain SDY_3921 PF00271 Helicase conserved C-terminal domain SDY_3921 PF00270 DEAD/DEAH box helicase SDY_3922 PF02253 Phospholipase A1 SDY_3923 PF03061 Thioesterase superfamily SDY_3924 PF00892 EamA-like transporter family SDY_3925 PF03811 InsA N-terminal domain SDY_3925 PF12759 InsA C-terminal domain SDY_3926 PF03400 IS1 transposase SDY_3927 PF03400 IS1 transposase SDY_3928 PF12759 InsA C-terminal domain SDY_3928 PF03811 InsA N-terminal domain SDY_3929 PF01544 CorA-like Mg2+ transporter protein SDY_3930 PF09992 Phosphodiester glycosidase SDY_3931 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase SDY_3932 PF00580 UvrD/REP helicase N-terminal domain SDY_3932 PF13361 UvrD-like helicase C-terminal domain SDY_3933 PF13419 Haloacid dehalogenase-like hydrolase SDY_3934 PF02899 Phage integrase, N-terminal SAM-like domain SDY_3934 PF00589 Phage integrase family SDY_3935 PF04340 Protein of unknown function, DUF484 SDY_3936 PF01678 Diaminopimelate epimerase SDY_3937 PF13627 Prokaryotic lipoprotein-attachment site SDY_3938 PF01491 Frataxin-like domain SDY_3940 PF12633 Adenylate cyclase NT domain SDY_3940 PF01295 Adenylate cyclase, class-I SDY_3941 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SDY_3941 PF03900 Porphobilinogen deaminase, C-terminal domain SDY_3942 PF02602 Uroporphyrinogen-III synthase HemD SDY_3943 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SDY_3944 PF07219 HemY protein N-terminus SDY_3944 PF07719 Tetratricopeptide repeat SDY_3945 PF00884 Sulfatase SDY_3946 PF03400 IS1 transposase SDY_3952 PF00324 Amino acid permease SDY_3953 PF03808 Glycosyl transferase WecB/TagA/CpsF family SDY_3954 PF06899 WzyE protein, O-antigen assembly polymerase SDY_3955 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SDY_3956 PF01943 Polysaccharide biosynthesis protein SDY_3957 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SDY_3959 PF00483 Nucleotidyl transferase SDY_3961 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SDY_3961 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SDY_3961 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SDY_3962 PF02350 UDP-N-acetylglucosamine 2-epimerase SDY_3963 PF02706 Chain length determinant protein SDY_3964 PF00953 Glycosyl transferase family 4 SDY_3966 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDY_3966 PF07498 Rho termination factor, N-terminal domain SDY_3966 PF07497 Rho termination factor, RNA-binding domain SDY_3968 PF00085 Thioredoxin SDY_3969 PF00270 DEAD/DEAH box helicase SDY_3969 PF00271 Helicase conserved C-terminal domain SDY_3970 PF02541 Ppx/GppA phosphatase family SDY_3971 PF00580 UvrD/REP helicase N-terminal domain SDY_3971 PF13361 UvrD-like helicase C-terminal domain SDY_3972 PF13276 HTH-like domain SDY_3972 PF00665 Integrase core domain SDY_3972a PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SDY_3974 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SDY_3974 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SDY_3975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3975 PF03466 LysR substrate binding domain SDY_3976 PF00585 C-terminal regulatory domain of Threonine dehydratase SDY_3976 PF00291 Pyridoxal-phosphate dependent enzyme SDY_3977 PF00920 Dehydratase family SDY_3978 PF01063 Amino-transferase class IV SDY_3980 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_3980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_3980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_3981 PF08046 IlvGEDA operon leader peptide SDY_3983 PF01548 Transposase SDY_3983 PF02371 Transposase IS116/IS110/IS902 family SDY_3984 PF04219 Protein of unknown function, DUF SDY_3985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_3985 PF03466 LysR substrate binding domain SDY_3992 PF00392 Bacterial regulatory proteins, gntR family SDY_3992 PF07729 FCD domain SDY_3993 PF07690 Major Facilitator Superfamily SDY_3994 PF00356 Bacterial regulatory proteins, lacI family SDY_3995 PF00294 pfkB family carbohydrate kinase SDY_3997 PF02653 Branched-chain amino acid transport system / permease component SDY_3998 PF03400 IS1 transposase SDY_4001 PF02705 K+ potassium transporter SDY_4002 PF12592 Protein of unknown function (DUF3763) SDY_4002 PF07728 AAA domain (dynein-related subfamily) SDY_4002 PF17868 AAA lid domain SDY_4003 PF05762 VWA domain containing CoxE-like protein SDY_4004 PF03590 Aspartate-ammonia ligase SDY_4005 PF01037 Lrp/AsnC ligand binding domain SDY_4006 PF00258 Flavodoxin SDY_4007 PF13932 GidA associated domain SDY_4007 PF01134 Glucose inhibited division protein A SDY_4008 PF02527 rRNA small subunit methyltransferase G SDY_4009 PF03899 ATP synthase I chain SDY_4010 PF00119 ATP synthase A chain SDY_4011 PF00137 ATP synthase subunit C SDY_4012 PF00430 ATP synthase B/B' CF(0) SDY_4013 PF00213 ATP synthase delta (OSCP) subunit SDY_4014 PF00306 ATP synthase alpha/beta chain, C terminal domain SDY_4014 PF02874 ATP synthase alpha/beta family, beta-barrel domain SDY_4014 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDY_4015 PF00231 ATP synthase SDY_4016 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SDY_4016 PF02874 ATP synthase alpha/beta family, beta-barrel domain SDY_4017 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SDY_4017 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SDY_4018 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_4018 PF14602 Hexapeptide repeat of succinyl-transferase SDY_4018 PF12804 MobA-like NTP transferase domain SDY_4019 PF01380 SIS domain SDY_4020 PF04986 Putative transposase SDY_4020 PF14319 Transposase zinc-binding domain SDY_4022 PF12849 PBP superfamily domain SDY_4023 PF00528 Binding-protein-dependent transport system inner membrane component SDY_4024 PF00528 Binding-protein-dependent transport system inner membrane component SDY_4025 PF00005 ABC transporter SDY_4026 PF01895 PhoU domain SDY_4029 PF03811 InsA N-terminal domain SDY_4029 PF12759 InsA C-terminal domain SDY_4030 PF03400 IS1 transposase SDY_4033 PF13018 Extended Signal Peptide of Type V secretion system SDY_4033 PF03895 YadA-like membrane anchor domain SDY_4033 PF05658 Head domain of trimeric autotransporter adhesin SDY_4033 PF05662 Coiled stalk of trimeric autotransporter adhesin SDY_4034 PF05662 Coiled stalk of trimeric autotransporter adhesin SDY_4034 PF13018 Extended Signal Peptide of Type V secretion system SDY_4034 PF05658 Head domain of trimeric autotransporter adhesin SDY_4034 PF03895 YadA-like membrane anchor domain SDY_4035 PF05662 Coiled stalk of trimeric autotransporter adhesin SDY_4035 PF05658 Head domain of trimeric autotransporter adhesin SDY_4035 PF03895 YadA-like membrane anchor domain SDY_4035 PF13018 Extended Signal Peptide of Type V secretion system SDY_4036 PF02652 L-lactate permease SDY_4037 PF00392 Bacterial regulatory proteins, gntR family SDY_4037 PF07729 FCD domain SDY_4038 PF01070 FMN-dependent dehydrogenase SDY_4039 PF00588 SpoU rRNA Methylase family SDY_4040 PF00132 Bacterial transferase hexapeptide (six repeats) SDY_4040 PF06426 Serine acetyltransferase, N-terminal SDY_4041 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SDY_4041 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SDY_4042 PF02556 Preprotein translocase subunit SecB SDY_4043 PF00462 Glutaredoxin SDY_4044 PF00581 Rhodanese-like domain SDY_4045 PF01676 Metalloenzyme superfamily SDY_4045 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SDY_4046 PF01551 Peptidase family M23 SDY_4047 PF04748 Divergent polysaccharide deacetylase SDY_4048 PF00535 Glycosyl transferase family 2 SDY_4049 PF00107 Zinc-binding dehydrogenase SDY_4049 PF08240 Alcohol dehydrogenase GroES-like domain SDY_4050 PF00155 Aminotransferase class I and II SDY_4051 PF01370 NAD dependent epimerase/dehydratase family SDY_4052 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SDY_4053 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SDY_4054 PF04932 O-Antigen ligase SDY_4056 PF01501 Glycosyl transferase family 8 SDY_4056 PF08437 Glycosyl transferase family 8 C-terminal SDY_4057 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SDY_4058 PF01501 Glycosyl transferase family 8 SDY_4058 PF08437 Glycosyl transferase family 8 C-terminal SDY_4059 PF08437 Glycosyl transferase family 8 C-terminal SDY_4059 PF01501 Glycosyl transferase family 8 SDY_4061 PF13439 Glycosyltransferase Family 4 SDY_4061 PF00534 Glycosyl transferases group 1 SDY_4062 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SDY_4063 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SDY_4064 PF01467 Cytidylyltransferase-like SDY_4065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SDY_4065 PF06827 Zinc finger found in FPG and IleRS SDY_4065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SDY_4066 PF00471 Ribosomal protein L33 SDY_4067 PF00830 Ribosomal L28 family SDY_4068 PF04002 RadC-like JAB domain SDY_4069 PF02441 Flavoprotein SDY_4069 PF04127 DNA / pantothenate metabolism flavoprotein SDY_4070 PF00692 dUTPase SDY_4071 PF00440 Bacterial regulatory proteins, tetR family SDY_4073 PF00156 Phosphoribosyl transferase domain SDY_4074 PF03725 3' exoribonuclease family, domain 2 SDY_4074 PF01138 3' exoribonuclease family, domain 1 SDY_4075 PF03755 YicC-like family, N-terminal region SDY_4075 PF08340 Domain of unknown function (DUF1732) SDY_4077 PF03458 UPF0126 domain SDY_4080 PF00625 Guanylate kinase SDY_4081 PF01192 RNA polymerase Rpb6 SDY_4082 PF02824 TGS domain SDY_4082 PF13291 ACT domain SDY_4082 PF04607 Region found in RelA / SpoT proteins SDY_4083 PF12105 SpoU, rRNA methylase, C-terminal SDY_4083 PF00588 SpoU rRNA Methylase family SDY_4084 PF00271 Helicase conserved C-terminal domain SDY_4084 PF00270 DEAD/DEAH box helicase SDY_4084 PF17191 RecG wedge domain SDY_4085 PF03616 Sodium/glutamate symporter SDY_4086 PF00860 Permease family SDY_4087 PF05170 AsmA family SDY_4088 PF13802 Galactose mutarotase-like SDY_4088 PF01055 Glycosyl hydrolases family 31 SDY_4089 PF01527 Transposase SDY_4092 PF02056 Family 4 glycosyl hydrolase SDY_4092 PF11975 Family 4 glycosyl hydrolase C-terminal domain SDY_4094 PF01276 Orn/Lys/Arg decarboxylase, major domain SDY_4094 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SDY_4094 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SDY_4095 PF12759 InsA C-terminal domain SDY_4095 PF03811 InsA N-terminal domain SDY_4096 PF03400 IS1 transposase SDY_4097 PF12833 Helix-turn-helix domain SDY_4098 PF13520 Amino acid permease SDY_4099 PF08019 Phosphoethanolamine transferase EptA/EptB SDY_4099 PF00884 Sulfatase SDY_4101 PF00512 His Kinase A (phospho-acceptor) domain SDY_4101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_4102 PF00083 Sugar (and other) transporter SDY_4102 PF08946 Osmosensory transporter coiled coil SDY_4103 PF13990 YjcZ-like protein SDY_4104 PF03811 InsA N-terminal domain SDY_4104 PF12759 InsA C-terminal domain SDY_4105 PF03400 IS1 transposase SDY_4107 PF03400 IS1 transposase SDY_4108 PF12759 InsA C-terminal domain SDY_4108 PF03811 InsA N-terminal domain SDY_4109 PF08274 PhnA Zinc-Ribbon SDY_4109 PF03831 PhnA domain SDY_4111 PF00005 ABC transporter SDY_4113 PF00528 Binding-protein-dependent transport system inner membrane component SDY_4114 PF07702 UTRA domain SDY_4114 PF00392 Bacterial regulatory proteins, gntR family SDY_4116 PF05845 Bacterial phosphonate metabolism protein (PhnH) SDY_4117 PF05861 Bacterial phosphonate metabolism protein (PhnI) SDY_4118 PF06007 Phosphonate metabolism protein PhnJ SDY_4119 PF00005 ABC transporter SDY_4120 PF00005 ABC transporter SDY_4121 PF07969 Amidohydrolase family SDY_4123 PF00583 Acetyltransferase (GNAT) family SDY_4124 PF12706 Beta-lactamase superfamily domain SDY_4127 PF08448 PAS fold SDY_4127 PF00072 Response regulator receiver domain SDY_4127 PF13188 PAS domain SDY_4127 PF00512 His Kinase A (phospho-acceptor) domain SDY_4127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_4128 PF00005 ABC transporter SDY_4130 PF13407 Periplasmic binding protein domain SDY_4132 PF01116 Fructose-bisphosphate aldolase class-II SDY_4134 PF00072 Response regulator receiver domain SDY_4134 PF00486 Transcriptional regulatory protein, C terminal SDY_4135 PF03400 IS1 transposase SDY_4137 PF09134 Invasin, domain 3 SDY_4137 PF11924 Inverse autotransporter, beta-domain SDY_4137 PF02369 Bacterial Ig-like domain (group 1) SDY_4138 PF09134 Invasin, domain 3 SDY_4138 PF11924 Inverse autotransporter, beta-domain SDY_4138 PF02369 Bacterial Ig-like domain (group 1) SDY_4139 PF03811 InsA N-terminal domain SDY_4139 PF12759 InsA C-terminal domain SDY_4140 PF03400 IS1 transposase SDY_4141 PF07690 Major Facilitator Superfamily SDY_4144 PF06711 Protein of unknown function (DUF1198) SDY_4146 PF01979 Amidohydrolase family SDY_4146 PF13382 Adenine deaminase C-terminal domain SDY_4147 PF07690 Major Facilitator Superfamily SDY_4148 PF07690 Major Facilitator Superfamily SDY_4149 PF05231 MASE1 SDY_4149 PF07730 Histidine kinase SDY_4149 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_4150 PF00196 Bacterial regulatory proteins, luxR family SDY_4150 PF00072 Response regulator receiver domain SDY_4151 PF03400 IS1 transposase SDY_4152 PF03400 IS1 transposase SDY_4154 PF01842 ACT domain SDY_4155 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_4155 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_4155 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_4156 PF08049 IlvB leader peptide SDY_4157 PF07690 Major Facilitator Superfamily SDY_4159 PF02656 Domain of unknown function (DUF202) SDY_4160 PF02656 Domain of unknown function (DUF202) SDY_4162 PF00884 Sulfatase SDY_4162 PF16347 Domain of unknown function (DUF4976) SDY_4163 PF03400 IS1 transposase SDY_4164 PF03811 InsA N-terminal domain SDY_4164 PF12759 InsA C-terminal domain SDY_4167 PF03400 IS1 transposase SDY_4168 PF02056 Family 4 glycosyl hydrolase SDY_4168 PF11975 Family 4 glycosyl hydrolase C-terminal domain SDY_4170 PF07702 UTRA domain SDY_4170 PF00392 Bacterial regulatory proteins, gntR family SDY_4171 PF02080 TrkA-C domain SDY_4171 PF06826 Predicted Permease Membrane Region SDY_4172 PF00011 Hsp20/alpha crystallin family SDY_4173 PF00011 Hsp20/alpha crystallin family SDY_4174 PF07119 Protein of unknown function (DUF1375) SDY_4175 PF07676 WD40-like Beta Propeller Repeat SDY_4175 PF12566 Protein of unknown function (DUF3748) SDY_4176 PF01494 FAD binding domain SDY_4180 PF06078 Bacterial protein of unknown function (DUF937) SDY_4181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_4181 PF01751 Toprim domain SDY_4181 PF00204 DNA gyrase B SDY_4181 PF00986 DNA gyrase B subunit, carboxyl terminus SDY_4181 PF18053 DNA gyrase B subunit insert domain SDY_4182 PF02463 RecF/RecN/SMC N terminal domain SDY_4183 PF00712 DNA polymerase III beta subunit, N-terminal domain SDY_4183 PF02767 DNA polymerase III beta subunit, central domain SDY_4183 PF02768 DNA polymerase III beta subunit, C-terminal domain SDY_4184 PF00308 Bacterial dnaA protein SDY_4184 PF11638 DnaA N-terminal domain SDY_4184 PF08299 Bacterial dnaA protein helix-turn-helix SDY_4185 PF00468 Ribosomal protein L34 SDY_4186 PF00825 Ribonuclease P SDY_4187 PF01809 Putative membrane protein insertion efficiency factor SDY_4188 PF14849 YidC periplasmic domain SDY_4188 PF02096 60Kd inner membrane protein SDY_4189 PF12631 MnmE helical domain SDY_4189 PF01926 50S ribosome-binding GTPase SDY_4189 PF10396 GTP-binding protein TrmE N-terminus SDY_4190 PF03400 IS1 transposase SDY_4192 PF03400 IS1 transposase SDY_4193 PF12759 InsA C-terminal domain SDY_4193 PF03811 InsA N-terminal domain SDY_4195 PF01527 Transposase SDY_4196 PF03811 InsA N-terminal domain SDY_4196 PF12759 InsA C-terminal domain SDY_4197 PF03400 IS1 transposase SDY_4198 PF13419 Haloacid dehalogenase-like hydrolase SDY_4199 PF00860 Permease family SDY_4202 PF03466 LysR substrate binding domain SDY_4202 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_4203 PF07690 Major Facilitator Superfamily SDY_4204 PF03222 Tryptophan/tyrosine permease family SDY_4205 PF00665 Integrase core domain SDY_4205 PF13276 HTH-like domain SDY_4207 PF01527 Transposase SDY_4209 PF03400 IS1 transposase SDY_4210 PF05593 RHS Repeat SDY_4210 PF03527 RHS protein SDY_4210 PF14220 Domain of unknown function (DUF4329) SDY_4211 PF13417 Glutathione S-transferase, N-terminal domain SDY_4211 PF00043 Glutathione S-transferase, C-terminal domain SDY_4212 PF12390 Selenocysteine synthase N terminal SDY_4212 PF03841 L-seryl-tRNA selenium transferase SDY_4213 PF00009 Elongation factor Tu GTP binding domain SDY_4213 PF03144 Elongation factor Tu domain 2 SDY_4213 PF09106 Elongation factor SelB, winged helix SDY_4213 PF09107 Elongation factor SelB, winged helix SDY_4215 PF03811 InsA N-terminal domain SDY_4215 PF12759 InsA C-terminal domain SDY_4216 PF03400 IS1 transposase SDY_4218 PF06146 Phosphate-starvation-inducible E SDY_4220 PF06251 Capsule biosynthesis GfcC SDY_4221 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SDY_4222 PF11106 Exopolysaccharide production protein YjbE SDY_4223 PF03400 IS1 transposase SDY_4225 PF04986 Putative transposase SDY_4225 PF14319 Transposase zinc-binding domain SDY_4226 PF00342 Phosphoglucose isomerase SDY_4227 PF01842 ACT domain SDY_4227 PF00696 Amino acid kinase family SDY_4228 PF13276 HTH-like domain SDY_4228 PF00665 Integrase core domain SDY_4229 PF01527 Transposase SDY_4231 PF05681 Fumarate hydratase (Fumerase) SDY_4231 PF05683 Fumarase C-terminus SDY_4232 PF03605 Anaerobic c4-dicarboxylate membrane transporter SDY_4233 PF03400 IS1 transposase SDY_4234 PF12759 InsA C-terminal domain SDY_4234 PF03811 InsA N-terminal domain SDY_4235 PF03400 IS1 transposase SDY_4237 PF00072 Response regulator receiver domain SDY_4238 PF00989 PAS fold SDY_4238 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_4238 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SDY_4238 PF17203 Single cache domain 3 SDY_4239 PF06902 Divergent 4Fe-4S mono-cluster SDY_4240 PF14542 GCN5-related N-acetyl-transferase SDY_4241 PF03400 IS1 transposase SDY_4242 PF03400 IS1 transposase SDY_4243 PF03400 IS1 transposase SDY_4245 PF12759 InsA C-terminal domain SDY_4245 PF03811 InsA N-terminal domain SDY_4246 PF03400 IS1 transposase SDY_4247 PF00005 ABC transporter SDY_4248 PF02653 Branched-chain amino acid transport system / permease component SDY_4249 PF02653 Branched-chain amino acid transport system / permease component SDY_4250 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SDY_4251 PF08245 Mur ligase middle domain SDY_4251 PF01225 Mur ligase family, catalytic domain SDY_4251 PF02875 Mur ligase family, glutamate ligase domain SDY_4252 PF04751 Protein of unknown function (DUF615) SDY_4253 PF01523 Putative modulator of DNA gyrase SDY_4255 PF04221 RelB antitoxin SDY_4255a PF07361 Cytochrome b562 SDY_4257 PF13597 Anaerobic ribonucleoside-triphosphate reductase SDY_4257 PF03477 ATP cone domain SDY_4258 PF11941 Domain of unknown function (DUF3459) SDY_4258 PF00128 Alpha amylase, catalytic domain SDY_4259 PF02378 Phosphotransferase system, EIIC SDY_4259 PF00367 phosphotransferase system, EIIB SDY_4260 PF00356 Bacterial regulatory proteins, lacI family SDY_4261 PF00689 Cation transporting ATPase, C-terminus SDY_4261 PF00690 Cation transporter/ATPase, N-terminus SDY_4262 PF01042 Endoribonuclease L-PSP SDY_4263 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SDY_4263 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SDY_4264 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SDY_4264 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SDY_4265 PF08052 PyrBI operon leader peptide SDY_4266 PF01042 Endoribonuclease L-PSP SDY_4269 PF00440 Bacterial regulatory proteins, tetR family SDY_4270 PF04074 YhcH/YjgK/YiaL SDY_4272 PF12759 InsA C-terminal domain SDY_4272 PF03811 InsA N-terminal domain SDY_4273 PF03400 IS1 transposase SDY_4274 PF01527 Transposase SDY_4275 PF00665 Integrase core domain SDY_4275 PF13276 HTH-like domain SDY_4276 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SDY_4276 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SDY_4277 PF06877 Regulator of ribonuclease activity B SDY_4278 PF00583 Acetyltransferase (GNAT) family SDY_4279 PF03400 IS1 transposase SDY_4280 PF05987 Bacterial protein of unknown function (DUF898) SDY_4281 PF03400 IS1 transposase SDY_4282 PF08264 Anticodon-binding domain of tRNA SDY_4282 PF10458 Valyl tRNA synthetase tRNA binding arm SDY_4282 PF00133 tRNA synthetases class I (I, L, M and V) SDY_4283 PF04364 DNA polymerase III chi subunit, HolC SDY_4284 PF00883 Cytosol aminopeptidase family, catalytic domain SDY_4284 PF02789 Cytosol aminopeptidase family, N-terminal domain SDY_4285 PF03739 Lipopolysaccharide export system permease LptF/LptG SDY_4286 PF03739 Lipopolysaccharide export system permease LptF/LptG SDY_4287 PF05872 Bacterial protein of unknown function (DUF853) SDY_4288 PF08240 Alcohol dehydrogenase GroES-like domain SDY_4288 PF00107 Zinc-binding dehydrogenase SDY_4290 PF13356 Arm DNA-binding domain SDY_4290 PF00589 Phage integrase family SDY_4292 PF01527 Transposase SDY_4293 PF00005 ABC transporter SDY_4294 PF01032 FecCD transport family SDY_4295 PF01032 FecCD transport family SDY_4297 PF07715 TonB-dependent Receptor Plug Domain SDY_4297 PF07660 Secretin and TonB N terminus short domain SDY_4297 PF00593 TonB dependent receptor SDY_4299 PF08281 Sigma-70, region 4 SDY_4299 PF04542 Sigma-70 region 2 SDY_4301 PF03400 IS1 transposase SDY_4302 PF03811 InsA N-terminal domain SDY_4302 PF12759 InsA C-terminal domain SDY_4307 PF13276 HTH-like domain SDY_4307 PF00665 Integrase core domain SDY_4308 PF01527 Transposase SDY_4309 PF11656 YjbD family (DUF3811) SDY_4310 PF01479 S4 domain SDY_4310 PF00849 RNA pseudouridylate synthase SDY_4311 PF04198 Putative sugar-binding domain SDY_4311 PF13936 Helix-turn-helix domain SDY_4314 PF03830 PTS system sorbose subfamily IIB component SDY_4315 PF03609 PTS system sorbose-specific iic component SDY_4317 PF08240 Alcohol dehydrogenase GroES-like domain SDY_4317 PF00107 Zinc-binding dehydrogenase SDY_4319 PF02690 Na+/Pi-cotransporter SDY_4320 PF03400 IS1 transposase SDY_4321 PF12759 InsA C-terminal domain SDY_4321 PF03811 InsA N-terminal domain SDY_4322 PF00809 Pterin binding enzyme SDY_4322 PF02965 Vitamin B12 dependent methionine synthase, activation domain SDY_4322 PF02607 B12 binding domain SDY_4322 PF02310 B12 binding domain SDY_4322 PF02574 Homocysteine S-methyltransferase SDY_4323 PF09339 IclR helix-turn-helix domain SDY_4323 PF01614 Bacterial transcriptional regulator SDY_4325 PF03400 IS1 transposase SDY_4327 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SDY_4328 PF00463 Isocitrate lyase family SDY_4330 PF04204 Homoserine O-succinyltransferase SDY_4331 PF03400 IS1 transposase SDY_4332 PF12759 InsA C-terminal domain SDY_4332 PF03811 InsA N-terminal domain SDY_4333 PF13673 Acetyltransferase (GNAT) domain SDY_4335 PF13006 Insertion element 4 transposase N-terminal SDY_4335 PF01609 Transposase DDE domain SDY_4336 PF13407 Periplasmic binding protein domain SDY_4337 PF03400 IS1 transposase SDY_4338 PF12759 InsA C-terminal domain SDY_4338 PF03811 InsA N-terminal domain SDY_4339 PF03400 IS1 transposase SDY_4340 PF01757 Acyltransferase family SDY_4341 PF01527 Transposase SDY_4342 PF13276 HTH-like domain SDY_4342 PF00665 Integrase core domain SDY_4342 PF13333 Integrase core domain SDY_4343 PF13983 YsaB-like lipoprotein SDY_4344 PF02091 Glycyl-tRNA synthetase alpha subunit SDY_4345 PF02092 Glycyl-tRNA synthetase beta subunit SDY_4345 PF05746 DALR anticodon binding domain SDY_4346 PF01848 Hok/gef family SDY_4347 PF00313 'Cold-shock' DNA-binding domain SDY_4348 PF01381 Helix-turn-helix SDY_4349 PF11254 Protein of unknown function (DUF3053) SDY_4350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SDY_4350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SDY_4351 PF13488 Glycine zipper SDY_4351 PF00691 OmpA family SDY_4352 PF18364 Molybdopterin oxidoreductase N-terminal domain SDY_4352 PF01568 Molydopterin dinucleotide binding domain SDY_4352 PF00384 Molybdopterin oxidoreductase SDY_4353 PF03352 Methyladenine glycosylase SDY_4356 PF03400 IS1 transposase SDY_4357 PF07338 Protein of unknown function (DUF1471) SDY_4358 PF07338 Protein of unknown function (DUF1471) SDY_4359 PF00326 Prolyl oligopeptidase family SDY_4360 PF08220 DeoR-like helix-turn-helix domain SDY_4360 PF00455 DeoR C terminal sensor domain SDY_4362 PF03611 PTS system sugar-specific permease component SDY_4363 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SDY_4364 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SDY_4365 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SDY_4367 PF00596 Class II Aldolase and Adducin N-terminal domain SDY_4369 PF01250 Ribosomal protein S6 SDY_4370 PF00436 Single-strand binding protein family SDY_4371 PF01084 Ribosomal protein S18 SDY_4372 PF01281 Ribosomal protein L9, N-terminal domain SDY_4372 PF03948 Ribosomal protein L9, C-terminal domain SDY_4373 PF03400 IS1 transposase SDY_4374 PF03811 InsA N-terminal domain SDY_4374 PF12759 InsA C-terminal domain SDY_4375 PF03400 IS1 transposase SDY_4376 PF08525 Opacity-associated protein A N-terminal motif SDY_4376 PF04225 Opacity-associated protein A LysM-like domain SDY_4377 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SDY_4377 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SDY_4378 PF00324 Amino acid permease SDY_4379 PF01814 Hemerythrin HHE cation binding domain SDY_4379 PF04405 Domain of Unknown function (DUF542) SDY_4380 PF00892 EamA-like transporter family SDY_4381 PF01638 HxlR-like helix-turn-helix SDY_4382 PF05368 NmrA-like family SDY_4383 PF00149 Calcineurin-like phosphoesterase SDY_4383 PF02872 5'-nucleotidase, C-terminal domain SDY_4384 PF03400 IS1 transposase SDY_4385 PF00459 Inositol monophosphatase family SDY_4386 PF03400 IS1 transposase SDY_4387 PF03811 InsA N-terminal domain SDY_4387 PF12759 InsA C-terminal domain SDY_4388 PF03400 IS1 transposase SDY_4389 PF04055 Radical SAM superfamily SDY_4390 PF08207 Elongation factor P (EF-P) KOW-like domain SDY_4390 PF01132 Elongation factor P (EF-P) OB domain SDY_4390 PF09285 Elongation factor P, C-terminal SDY_4391 PF08085 Entericidin EcnA/B family SDY_4392 PF00893 Small Multidrug Resistance protein SDY_4393 PF08212 Lipocalin-like domain SDY_4394 PF00144 Beta-lactamase SDY_4395 PF02313 Fumarate reductase subunit D SDY_4396 PF02300 Fumarate reductase subunit C SDY_4397 PF13183 4Fe-4S dicluster domain SDY_4397 PF13085 2Fe-2S iron-sulfur cluster binding domain SDY_4398 PF02910 Fumarate reductase flavoprotein C-term SDY_4398 PF00890 FAD binding domain SDY_4399 PF00152 tRNA synthetases class II (D, K and N) SDY_4402 PF06693 Protein of unknown function (DUF1190) SDY_4403 PF03738 Glutathionylspermidine synthase preATP-grasp SDY_4404 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SDY_4404 PF02770 Acyl-CoA dehydrogenase, middle domain SDY_4404 PF18158 Adaptive response protein AidB N-terminal domain SDY_4406 PF03400 IS1 transposase SDY_4407 PF12759 InsA C-terminal domain SDY_4407 PF03811 InsA N-terminal domain SDY_4408 PF03400 IS1 transposase SDY_4409 PF08032 RNA 2'-O ribose methyltransferase substrate binding SDY_4409 PF00588 SpoU rRNA Methylase family SDY_4410 PF17876 Cold shock domain SDY_4410 PF08206 Ribonuclease B OB domain SDY_4410 PF00575 S1 RNA binding domain SDY_4410 PF08461 Ribonuclease R winged-helix domain SDY_4410 PF00773 RNB domain SDY_4411 PF02082 Transcriptional regulator SDY_4412 PF00709 Adenylosuccinate synthetase SDY_4413 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SDY_4414 PF01145 SPFH domain / Band 7 family SDY_4415 PF12221 Bacterial membrane protein N terminal SDY_4415 PF01145 SPFH domain / Band 7 family SDY_4416 PF13167 GTP-binding GTPase N-terminal SDY_4416 PF01926 50S ribosome-binding GTPase SDY_4416 PF16360 GTP-binding GTPase Middle Region SDY_4417 PF17209 Hfq protein SDY_4419 PF08676 MutL C terminal dimerisation domain SDY_4419 PF01119 DNA mismatch repair protein, C-terminal domain SDY_4420 PF01520 N-acetylmuramoyl-L-alanine amidase SDY_4421 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SDY_4422 PF03400 IS1 transposase SDY_4424 PF03400 IS1 transposase SDY_4425 PF08331 Domain of unknown function (DUF1730) SDY_4426 PF01256 Carbohydrate kinase SDY_4426 PF03853 YjeF-related protein N-terminus SDY_4430 PF00929 Exonuclease SDY_4431 PF03193 RsgA GTPase SDY_4432 PF02666 Phosphatidylserine decarboxylase SDY_4433 PF12795 Mechanosensitive ion channel porin domain SDY_4433 PF12794 Mechanosensitive ion channel inner membrane domain 1 SDY_4433 PF00924 Mechanosensitive ion channel SDY_4434 PF13520 Amino acid permease SDY_4435 PF03400 IS1 transposase SDY_4437 PF03400 IS1 transposase SDY_4438 PF12759 InsA C-terminal domain SDY_4438 PF03811 InsA N-terminal domain SDY_4441 PF02683 Cytochrome C biogenesis protein transmembrane region SDY_4441 PF11412 Disulphide bond corrector protein DsbC SDY_4442 PF03091 CutA1 divalent ion tolerance protein SDY_4443 PF03605 Anaerobic c4-dicarboxylate membrane transporter SDY_4444 PF00206 Lyase SDY_4444 PF10415 Fumarase C C-terminus SDY_4445 PF04186 FxsA cytoplasmic membrane protein SDY_4446 PF03400 IS1 transposase SDY_4447 PF13520 Amino acid permease SDY_4448 PF00166 Chaperonin 10 Kd subunit SDY_4449 PF00118 TCP-1/cpn60 chaperonin family SDY_4450 PF13698 Domain of unknown function (DUF4156) SDY_4451 PF15922 YjeJ-like SDY_4452 PF03400 IS1 transposase SDY_4453 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SDY_4454 PF06526 Protein of unknown function (DUF1107) SDY_4455 PF01595 Cyclin M transmembrane N-terminal domain SDY_4455 PF00571 CBS domain SDY_4455 PF03471 Transporter associated domain SDY_4456 PF01625 Peptide methionine sulfoxide reductase SDY_4457 PF01103 Surface antigen SDY_4457 PF17243 POTRA domain TamA domain 1 SDY_4457 PF07244 Surface antigen variable number repeat SDY_4458 PF04357 TamB, inner membrane protein subunit of TAM complex SDY_4459 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SDY_4460 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SDY_4461 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SDY_4462 PF00719 Inorganic pyrophosphatase SDY_4463 PF13407 Periplasmic binding protein domain SDY_4464 PF03400 IS1 transposase SDY_4465 PF13520 Amino acid permease SDY_4467 PF00854 POT family SDY_4468 PF00152 tRNA synthetases class II (D, K and N) SDY_4468 PF01336 OB-fold nucleic acid binding domain SDY_4469 PF00665 Integrase core domain SDY_4469 PF13276 HTH-like domain SDY_4469 PF13333 Integrase core domain SDY_4470 PF00665 Integrase core domain SDY_4473 PF03400 IS1 transposase SDY_4474 PF00872 Transposase, Mutator family SDY_4476 PF03400 IS1 transposase SDY_4477 PF00072 Response regulator receiver domain SDY_4477 PF00196 Bacterial regulatory proteins, luxR family SDY_4478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SDY_4478 PF00512 His Kinase A (phospho-acceptor) domain SDY_4478 PF00072 Response regulator receiver domain SDY_4478 PF00497 Bacterial extracellular solute-binding proteins, family 3 SDY_4479 PF13007 Transposase C of IS166 homeodomain SDY_4479 PF13817 IS66 C-terminal element SDY_4479 PF03050 Transposase IS66 family SDY_4479 PF13005 zinc-finger binding domain of transposase IS66 SDY_4480 PF05717 IS66 Orf2 like protein SDY_4481 PF05717 IS66 Orf2 like protein SDY_4483 PF03811 InsA N-terminal domain SDY_4483 PF12759 InsA C-terminal domain SDY_4484 PF03400 IS1 transposase SDY_4485 PF13276 HTH-like domain SDY_4485 PF13333 Integrase core domain SDY_4485 PF00665 Integrase core domain SDY_4486 PF04264 YceI-like domain SDY_4487 PF03400 IS1 transposase SDY_4489 PF03400 IS1 transposase SDY_4490 PF13333 Integrase core domain SDY_4490 PF00665 Integrase core domain SDY_4490 PF13276 HTH-like domain SDY_4491 PF01527 Transposase SDY_4495 PF01527 Transposase SDY_4496 PF03400 IS1 transposase SDY_4498 PF00892 EamA-like transporter family SDY_4499 PF03180 NLPA lipoprotein SDY_4500 PF03400 IS1 transposase SDY_4501 PF03811 InsA N-terminal domain SDY_4501 PF12759 InsA C-terminal domain SDY_4502 PF00999 Sodium/hydrogen exchanger family SDY_4503 PF00860 Permease family SDY_4504 PF09278 MerR, DNA binding SDY_4504 PF00376 MerR family regulatory protein SDY_4505 PF12833 Helix-turn-helix domain SDY_4506 PF03400 IS1 transposase SDY_4507 PF15940 Family of unknown function SDY_4508 PF00436 Single-strand binding protein family SDY_4509 PF17755 UvrA DNA-binding domain SDY_4509 PF00005 ABC transporter SDY_4509 PF17760 UvrA interaction domain SDY_4510 PF04237 YjbR SDY_4511 PF01894 Uncharacterised protein family UPF0047 SDY_4512 PF03400 IS1 transposase SDY_4513 PF03811 InsA N-terminal domain SDY_4513 PF12759 InsA C-terminal domain SDY_4520 PF00155 Aminotransferase class I and II SDY_4521 PF00842 Alanine racemase, C-terminal domain SDY_4521 PF01168 Alanine racemase, N-terminal domain SDY_4522 PF00772 DnaB-like helicase N terminal domain SDY_4522 PF03796 DnaB-like helicase C terminal domain SDY_4523 PF00107 Zinc-binding dehydrogenase SDY_4523 PF08240 Alcohol dehydrogenase GroES-like domain SDY_4524 PF09583 Phage shock protein G (Phageshock_PspG) SDY_4525 PF01207 Dihydrouridine synthase (Dus) SDY_4528 PF01475 Ferric uptake regulator family SDY_4529 PF05532 CsbD-like SDY_4530 PF01554 MatE SDY_4531 PF01726 LexA DNA binding domain SDY_4531 PF00717 Peptidase S24-like SDY_4532 PF01219 Prokaryotic diacylglycerol kinase SDY_4533 PF01553 Acyltransferase SDY_4534 PF01040 UbiA prenyltransferase family SDY_4535 PF04345 Chorismate lyase SDY_4536 PF03811 InsA N-terminal domain SDY_4536 PF12759 InsA C-terminal domain SDY_4537 PF03400 IS1 transposase SDY_4538 PF00529 HlyD membrane-fusion protein of T1SS SDY_4538 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SDY_4539 PF03466 LysR substrate binding domain SDY_4539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_4540 PF03400 IS1 transposase SDY_4541 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SDY_4541 PF03466 LysR substrate binding domain SDY_4542 PF03631 Virulence factor BrkB SDY_4543 PF07690 Major Facilitator Superfamily SDY_4543 PF00083 Sugar (and other) transporter SDY_4544 PF05170 AsmA family SDY_4545 PF00563 EAL domain SDY_4546 PF00294 pfkB family carbohydrate kinase SDY_4547 PF05193 Peptidase M16 inactive domain SDY_4547 PF00675 Insulinase (Peptidase family M16) SDY_4548 PF00375 Sodium:dicarboxylate symporter family SDY_4549 PF00563 EAL domain SDY_4549 PF00672 HAMP domain SDY_4549 PF00990 Diguanylate cyclase, GGDEF domain SDY_4549 PF17154 Gammaproteobacterial periplasmic sensor domain SDY_4552 PF03170 Bacterial cellulose synthase subunit SDY_4553 PF00535 Glycosyl transferase family 2 SDY_4553 PF07238 PilZ domain SDY_4553 PF03552 Cellulose synthase SDY_4555 PF10945 Cellulose biosynthesis protein BcsR SDY_4557 PF03400 IS1 transposase SDY_4558 PF03811 InsA N-terminal domain SDY_4558 PF12759 InsA C-terminal domain SDY_4559 PF03400 IS1 transposase SDY_4560 PF13940 Toxin Ldr, type I toxin-antitoxin system SDY_4562 PF03222 Tryptophan/tyrosine permease family SDY_4563 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_4563 PF00005 ABC transporter SDY_4564 PF00005 ABC transporter SDY_4564 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SDY_4565 PF00528 Binding-protein-dependent transport system inner membrane component SDY_4565 PF12911 N-terminal TM domain of oligopeptide transport permease C SDY_4566 PF00528 Binding-protein-dependent transport system inner membrane component SDY_4567 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SDY_4569 PF08019 Phosphoethanolamine transferase EptA/EptB SDY_4569 PF00884 Sulfatase SDY_4570 PF13953 PapC C-terminal domain SDY_4570 PF13954 PapC N-terminal domain SDY_4570 PF00577 Outer membrane usher protein SDY_4571 PF00665 Integrase core domain SDY_4571 PF13276 HTH-like domain SDY_4572 PF01527 Transposase SDY_4574 PF13333 Integrase core domain SDY_4574 PF00665 Integrase core domain SDY_4574 PF13276 HTH-like domain SDY_4575 PF01055 Glycosyl hydrolases family 31 SDY_4575 PF13802 Galactose mutarotase-like SDY_4576 PF03400 IS1 transposase SDY_4580 PF00589 Phage integrase family SDY_4580 PF13356 Arm DNA-binding domain SDY_4581 PF12759 InsA C-terminal domain SDY_4581 PF03811 InsA N-terminal domain SDY_4582 PF03400 IS1 transposase SDY_4584 PF01527 Transposase SDY_4585 PF00665 Integrase core domain SDY_4585 PF13276 HTH-like domain SDY_4586 PF00665 Integrase core domain SDY_4586 PF13333 Integrase core domain SDY_4586 PF13276 HTH-like domain SDY_4587 PF16168 Adhesin of bacterial autotransporter system, probable stalk SDY_4587 PF03797 Autotransporter beta-domain SDY_4587 PF13018 Extended Signal Peptide of Type V secretion system SDY_4589 PF03230 Antirestriction protein SDY_4590 PF04002 RadC-like JAB domain SDY_4591 PF06174 Protein of unknown function (DUF987) SDY_4591a PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SDY_4595 PF11823 Protein of unknown function (DUF3343) SDY_4596 PF01869 BadF/BadG/BcrA/BcrD ATPase family SDY_4599 PF07690 Major Facilitator Superfamily SDY_4600 PF04754 Putative transposase, YhgA-like SDY_4601 PF00155 Aminotransferase class I and II SDY_4601 PF00392 Bacterial regulatory proteins, gntR family SDY_4602 PF06568 Domain of unknown function (DUF1127) SDY_4604 PF03400 IS1 transposase SDY_4605 PF02492 CobW/HypB/UreG, nucleotide-binding domain SDY_4605 PF07683 Cobalamin synthesis protein cobW C-terminal domain SDY_4606 PF04328 Selenoprotein, putative SDY_4607 PF02554 Carbon starvation protein CstA SDY_4607 PF13722 5TM C-terminal transporter carbon starvation CstA SDY_4609 PF01527 Transposase SDY_4612 PF08240 Alcohol dehydrogenase GroES-like domain SDY_4612 PF00107 Zinc-binding dehydrogenase SDY_4613 PF00884 Sulfatase SDY_4614 PF10696 Protein of unknown function (DUF2501) SDY_4615 PF01695 IstB-like ATP binding protein SDY_4616 PF17948 DnaT DNA-binding domain SDY_4617 PF12821 Threonine/Serine exporter, ThrE SDY_4618 PF12759 InsA C-terminal domain SDY_4618 PF03811 InsA N-terminal domain SDY_4619 PF03400 IS1 transposase SDY_4621 PF03400 IS1 transposase SDY_4623 PF03400 IS1 transposase SDY_4625 PF06276 Ferric iron reductase FhuF-like transporter SDY_4625 PF11575 FhuF 2Fe-2S C-terminal domain SDY_4626 PF07256 Protein of unknown function (DUF1435) SDY_4630 PF05175 Methyltransferase small domain SDY_4630 PF08468 Methyltransferase small domain N-terminal SDY_4631 PF03603 DNA polymerase III psi subunit SDY_4632 PF00583 Acetyltransferase (GNAT) family SDY_4633 PF13419 Haloacid dehalogenase-like hydrolase SDY_4634 PF03144 Elongation factor Tu domain 2 SDY_4634 PF00009 Elongation factor Tu GTP binding domain SDY_4634 PF16658 Class II release factor RF3, C-terminal domain SDY_4635 PF03400 IS1 transposase SDY_4636 PF04972 BON domain SDY_4636a PF07043 Protein of unknown function (DUF1328) SDY_4637 PF01734 Patatin-like phospholipase SDY_4638 PF01026 TatD related DNase SDY_4639 PF04055 Radical SAM superfamily SDY_4640 PF11230 Protein of unknown function (DUF3029) SDY_4641 PF01791 DeoC/LacD family aldolase SDY_4642 PF00591 Glycosyl transferase family, a/b domain SDY_4642 PF02885 Glycosyl transferase family, helical bundle domain SDY_4642 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SDY_4643 PF01676 Metalloenzyme superfamily SDY_4644 PF01048 Phosphorylase superfamily SDY_4645 PF03400 IS1 transposase SDY_4647 PF03099 Biotin/lipoate A/B protein ligase family SDY_4647 PF10437 Bacterial lipoate protein ligase C-terminus SDY_4648 PF10144 Bacterial virulence factor haemolysin SDY_4649 PF18429 Domain of unknown function (DUF5609) SDY_4650 PF18073 Rubredoxin metal binding domain SDY_4651 PF01381 Helix-turn-helix SDY_4651 PF13521 AAA domain SDY_4652 PF12848 ABC transporter SDY_4652 PF00005 ABC transporter SDY_4653 PF01464 Transglycosylase SLT domain SDY_4653 PF14718 Soluble lytic murein transglycosylase L domain SDY_4654 PF01371 Trp repressor protein SDY_4655 PF01931 Protein of unknown function DUF84 SDY_4656 PF00300 Histidine phosphatase superfamily (branch 1) SDY_4657 PF12833 Helix-turn-helix domain SDY_4657 PF06445 GyrI-like small molecule binding domain SDY_4658 PF05981 CreA protein SDY_4659 PF00072 Response regulator receiver domain SDY_4659 PF00486 Transcriptional regulatory protein, C terminal SDY_4662 PF00072 Response regulator receiver domain SDY_4662 PF00486 Transcriptional regulatory protein, C terminal SDY_4664 PF00588 SpoU rRNA Methylase family SDY_P003 PF00696 Amino acid kinase family SDY_P003 PF01842 ACT domain SDY_P003 PF13840 ACT domain SDY_P003 PF00742 Homoserine dehydrogenase SDY_P003 PF03447 Homoserine dehydrogenase, NAD binding domain SDY_P026 PF06434 Aconitate hydratase 2 N-terminus SDY_P026 PF00330 Aconitase family (aconitate hydratase) SDY_P026 PF11791 Aconitate B N-terminal domain SDY_P044 PF01687 Riboflavin kinase SDY_P044 PF06574 FAD synthetase SDY_P059 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SDY_P059 PF02142 MGS-like domain SDY_P059 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SDY_P069 PF02028 BCCT, betaine/carnitine/choline family transporter SDY_P095 PF04453 LPS transport system D SDY_P095 PF03968 OstA-like protein SDY_P098 PF00226 DnaJ domain SDY_P098 PF05099 Tellurite resistance protein TerB SDY_P136 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SDY_P136 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SDY_P136 PF00205 Thiamine pyrophosphate enzyme, central domain SDY_P154 PF04101 Glycosyltransferase family 28 C-terminal domain SDY_P154 PF03033 Glycosyltransferase family 28 N-terminal domain SDY_P155 PF03033 Glycosyltransferase family 28 N-terminal domain SDY_P155 PF04101 Glycosyltransferase family 28 C-terminal domain SDY_P167 PF00482 Type II secretion system (T2SS), protein F SDY_P181 PF00456 Transketolase, thiamine diphosphate binding domain SDY_P181 PF17831 Pyruvate dehydrogenase E1 component middle domain SDY_P182 PF17831 Pyruvate dehydrogenase E1 component middle domain SDY_P182 PF00456 Transketolase, thiamine diphosphate binding domain SDY_P191 PF02569 Pantoate-beta-alanine ligase SDY_P199 PF02834 LigT like Phosphoesterase SDY_P203 PF00271 Helicase conserved C-terminal domain SDY_P203 PF08482 ATP-dependent helicase C-terminal SDY_P203 PF04408 Helicase associated domain (HA2) SDY_P203 PF00270 DEAD/DEAH box helicase SDY_P209 PF14814 Bifunctional transglycosylase second domain SDY_P209 PF00905 Penicillin binding protein transpeptidase domain SDY_P209 PF00912 Transglycosylase SDY_P209 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SDY_P218 PF00654 Voltage gated chloride channel SDY_P222 PF01966 HD domain SDY_P222 PF13286 Phosphohydrolase-associated domain SDY_PA01 PF03447 Homoserine dehydrogenase, NAD binding domain SDY_PA01 PF13840 ACT domain SDY_PA01 PF01842 ACT domain SDY_PA01 PF00696 Amino acid kinase family SDY_PA01 PF00742 Homoserine dehydrogenase SDY_PA02 PF03447 Homoserine dehydrogenase, NAD binding domain SDY_PA02 PF00742 Homoserine dehydrogenase SDY_PA02 PF13840 ACT domain SDY_PA02 PF00696 Amino acid kinase family SDY_PA02 PF01842 ACT domain