##gff-version 3 #!gff-spec-version 1.21 #!processor NCBI annotwriter #!genome-build ASM1358v1 #!genome-build-accession NCBI_Assembly:GCF_000013585.1 ##sequence-region NC_008258.1 1 4574284 ##species http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=373384 NC_008258.1 RefSeq region 1 4574284 . + . ID=id0;Dbxref=taxon:373384;Is_circular=true;Name=ANONYMOUS;country=China;gbkey=Src;genome=chromosome;isolation-source=epidemic;mol_type=genomic DNA;strain=8401 NC_008258.1 RefSeq gene 190 255 . + . ID=gene0;Name=thrL;gbkey=Gene;gene=thrL;gene_biotype=protein_coding;locus_tag=SFV_RS00005 NC_008258.1 Protein Homology CDS 190 255 . + 0 ID=cds0;Parent=gene0;Dbxref=Genbank:WP_001386572.1;Name=WP_001386572.1;Note=involved in threonine biosynthesis%3B controls the expression of the thrLABC operon;gbkey=CDS;gene=thrL;product=thr operon leader peptide;protein_id=WP_001386572.1;transl_table=11 NC_008258.1 RefSeq gene 336 2798 . + . ID=gene1;Name=thrA;gbkey=Gene;gene=thrA;gene_biotype=protein_coding;locus_tag=SFV_RS00010;old_locus_tag=SFV_0001 NC_008258.1 Protein Homology CDS 336 2798 . + 0 ID=cds1;Parent=gene1;Dbxref=Genbank:WP_005104733.1;Name=WP_005104733.1;Note=multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways;gbkey=CDS;gene=thrA;product=bifunctional aspartokinase I/homoserine dehydrogenase I;protein_id=WP_005104733.1;transl_table=11 NC_008258.1 RefSeq gene 2800 3732 . + . ID=gene2;Name=SFV_RS00015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00015;old_locus_tag=SFV_0002 NC_008258.1 Protein Homology CDS 2800 3732 . + 0 ID=cds2;Parent=gene2;Dbxref=Genbank:WP_000241642.1;Name=WP_000241642.1;Note=catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate;gbkey=CDS;product=homoserine kinase;protein_id=WP_000241642.1;transl_table=11 NC_008258.1 RefSeq gene 3733 5019 . + . ID=gene3;Name=SFV_RS00020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00020;old_locus_tag=SFV_0003 NC_008258.1 Protein Homology CDS 3733 5019 . + 0 ID=cds3;Parent=gene3;Dbxref=Genbank:WP_000781046.1;Name=WP_000781046.1;gbkey=CDS;product=threonine synthase;protein_id=WP_000781046.1;transl_table=11 NC_008258.1 RefSeq gene 5087 5236 . + . ID=gene4;Name=SFV_RS00025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00025 NC_008258.1 Protein Homology CDS 5087 5236 . + 0 ID=cds4;Parent=gene4;Dbxref=Genbank:WP_000414150.1;Name=WP_000414150.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000414150.1;transl_table=11 NC_008258.1 RefSeq gene 5233 5529 . + . ID=gene5;Name=SFV_RS00030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00030;old_locus_tag=SFV_0004 NC_008258.1 Protein Homology CDS 5233 5529 . + 0 ID=cds5;Parent=gene5;Dbxref=Genbank:WP_000738723.1;Name=WP_000738723.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000738723.1;transl_table=11 NC_008258.1 RefSeq gene 5682 6458 . - . ID=gene6;Name=SFV_RS00035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00035;old_locus_tag=SFV_0005 NC_008258.1 Protein Homology CDS 5682 6458 . - 0 ID=cds6;Parent=gene6;Dbxref=Genbank:WP_000906195.1;Name=WP_000906195.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000906195.1;transl_table=11 NC_008258.1 RefSeq gene 6528 8024 . - . ID=gene7;Name=SFV_RS00040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS00040;pseudo=true NC_008258.1 Protein Homology CDS 6528 8024 . - 0 ID=cds7;Parent=gene7;gbkey=CDS;product=sodium:alanine symporter;pseudo=true;transl_except=(pos:complement(6918..6920)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 8303 9256 . + . ID=gene8;Name=SFV_RS00045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00045;old_locus_tag=SFV_0007 NC_008258.1 Protein Homology CDS 8303 9256 . + 0 ID=cds8;Parent=gene8;Dbxref=Genbank:WP_000130185.1;Name=WP_000130185.1;gbkey=CDS;product=transaldolase 1;protein_id=WP_000130185.1;transl_table=11 NC_008258.1 RefSeq gene 9371 9958 . + . ID=gene9;Name=mogA;gbkey=Gene;gene=mogA;gene_biotype=protein_coding;locus_tag=SFV_RS00050;old_locus_tag=SFV_0008 NC_008258.1 Protein Homology CDS 9371 9958 . + 0 ID=cds9;Parent=gene9;Dbxref=Genbank:WP_001295414.1;Name=WP_001295414.1;Note=forms a trimer%3B related to eukaryotic protein gephyrin%3B functions during molybdenum cofactor biosynthesis;gbkey=CDS;gene=mogA;product=molybdopterin adenylyltransferase;protein_id=WP_001295414.1;transl_table=11 NC_008258.1 RefSeq gene 9993 10559 . - . ID=gene10;Name=SFV_RS00055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00055;old_locus_tag=SFV_0009 NC_008258.1 Protein Homology CDS 9993 10559 . - 0 ID=cds10;Parent=gene10;Dbxref=Genbank:WP_000528538.1;Name=WP_000528538.1;gbkey=CDS;product=succinate-acetate/proton symporter SatP;protein_id=WP_000528538.1;transl_table=11 NC_008258.1 RefSeq gene 10708 11421 . - . ID=gene11;Name=SFV_RS00060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00060;old_locus_tag=SFV_0010 NC_008258.1 Protein Homology CDS 10708 11421 . - 0 ID=cds11;Parent=gene11;Dbxref=Genbank:WP_001102352.1;Name=WP_001102352.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001102352.1;transl_table=11 NC_008258.1 RefSeq gene 11447 11851 . - . ID=gene12;Name=SFV_RS00065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00065;old_locus_tag=SFV_0011 NC_008258.1 Protein Homology CDS 11447 11851 . - 0 ID=cds12;Parent=gene12;Dbxref=Genbank:WP_000843568.1;Name=WP_000843568.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000843568.1;transl_table=11 NC_008258.1 RefSeq gene 12228 14144 . + . ID=gene13;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=SFV_RS00070;old_locus_tag=SFV_0012 NC_008258.1 Protein Homology CDS 12228 14144 . + 0 ID=cds13;Parent=gene13;Dbxref=Genbank:WP_000516121.1;Name=WP_000516121.1;Note=heat shock protein 70%3B assists in folding of nascent polypeptide chains%3B refolding of misfolded proteins%3B utilizes ATPase activity to help fold%3B co-chaperones are DnaJ and GrpE%3B multiple copies in some bacteria;gbkey=CDS;gene=dnaK;product=molecular chaperone DnaK;protein_id=WP_000516121.1;transl_table=11 NC_008258.1 RefSeq gene 14233 15363 . + . ID=gene14;Name=SFV_RS00075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00075;old_locus_tag=SFV_0013 NC_008258.1 Protein Homology CDS 14233 15363 . + 0 ID=cds14;Parent=gene14;Dbxref=Genbank:WP_001118475.1;Name=WP_001118475.1;Note=chaperone Hsp40%3B co-chaperone with DnaK%3B Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins%2C also in an autonomous%2C dnaK-independent fashion;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_001118475.1;transl_table=11 NC_008258.1 RefSeq gene 15467 15619 . - . ID=gene15;Name=SFV_RS00080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00080 NC_008258.1 Protein Homology CDS 15467 15619 . - 0 ID=cds15;Parent=gene15;Dbxref=Genbank:WP_000809168.1;Name=WP_000809168.1;gbkey=CDS;product=protein HokC;protein_id=WP_000809168.1;transl_table=11 NC_008258.1 RefSeq gene 16206 17372 . + . ID=gene16;Name=nhaA;gbkey=Gene;gene=nhaA;gene_biotype=protein_coding;locus_tag=SFV_RS00085;old_locus_tag=SFV_0014 NC_008258.1 Protein Homology CDS 16206 17372 . + 0 ID=cds16;Parent=gene16;Dbxref=Genbank:WP_000681350.1;Name=WP_000681350.1;Note=exports sodium by using the electrochemical proton gradient to allow protons into the cell%3B functions in adaptation to high salinity and alkaline pH%3B activity increases at higher pH%3B downregulated at acidic pH;gbkey=CDS;gene=nhaA;product=Na+/H+ antiporter NhaA;protein_id=WP_000681350.1;transl_table=11 NC_008258.1 RefSeq gene 17438 18337 . + . ID=gene17;Name=nhaR;gbkey=Gene;gene=nhaR;gene_biotype=protein_coding;locus_tag=SFV_RS00090;old_locus_tag=SFV_0015 NC_008258.1 Protein Homology CDS 17438 18337 . + 0 ID=cds17;Parent=gene17;Dbxref=Genbank:WP_001338226.1;Name=WP_001338226.1;Note=Na+/H+ antiporter regulatory protein%3B activates the genes nhaA and osmC;gbkey=CDS;gene=nhaR;product=transcriptional regulator;protein_id=WP_001338226.1;transl_table=11 NC_008258.1 RefSeq gene 18375 18740 . - . ID=gene18;Name=SFV_RS00095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00095 NC_008258.1 Protein Homology CDS 18375 18740 . - 0 ID=cds18;Parent=gene18;Dbxref=Genbank:WP_032155592.1;Name=WP_032155592.1;gbkey=CDS;product=fimbrial family protein;protein_id=WP_032155592.1;transl_table=11 NC_008258.1 RefSeq repeat_region 18726 19506 . + . ID=id1;gbkey=repeat_region NC_008258.1 RefSeq region 18735 19502 . - . ID=id2;gbkey=mobile_element NC_008258.1 RefSeq gene 18750 19253 . - . ID=gene19;Name=SFV_RS00100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00100;old_locus_tag=SFV_0016 NC_008258.1 Protein Homology CDS 18750 19253 . - 0 ID=cds19;Parent=gene19;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 19172 19447 . - . ID=gene20;Name=SFV_RS00105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00105 NC_008258.1 Protein Homology CDS 19172 19447 . - 0 ID=cds20;Parent=gene20;Dbxref=Genbank:WP_001317300.1;Name=WP_001317300.1;gbkey=CDS;product=transposase;protein_id=WP_001317300.1;transl_table=11 NC_008258.1 RefSeq gene 19836 20099 . - . ID=gene21;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=SFV_RS00110;old_locus_tag=SFV_0018 NC_008258.1 Protein Homology CDS 19836 20099 . - 0 ID=cds21;Parent=gene21;Dbxref=Genbank:WP_001274023.1;Name=WP_001274023.1;Note=binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase;gbkey=CDS;gene=rpsT;product=30S ribosomal protein S20;protein_id=WP_001274023.1;transl_table=11 NC_008258.1 RefSeq gene 20202 20420 . + . ID=gene22;Name=SFV_RS00115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00115 NC_008258.1 Protein Homology CDS 20202 20420 . + 0 ID=cds22;Parent=gene22;Dbxref=Genbank:WP_011110533.1;Name=WP_011110533.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110533.1;transl_table=11 NC_008258.1 RefSeq gene 20428 21369 . + . ID=gene23;Name=SFV_RS00120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00120;old_locus_tag=SFV_0019 NC_008258.1 Protein Homology CDS 20428 21369 . + 0 ID=cds23;Parent=gene23;Dbxref=Genbank:WP_000767329.1;Name=WP_000767329.1;gbkey=CDS;product=bifunctional riboflavin kinase/FMN adenylyltransferase;protein_id=WP_000767329.1;transl_table=11 NC_008258.1 RefSeq gene 21412 24228 . + . ID=gene24;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=SFV_RS00125;old_locus_tag=SFV_0020 NC_008258.1 Protein Homology CDS 21412 24228 . + 0 ID=cds24;Parent=gene24;Dbxref=Genbank:WP_001286850.1;Name=WP_001286850.1;Note=IleRS%3B catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile)%3B since isoleucine and other amino acids such as valine are similar%2C there are additional editing function in this enzyme%3B one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile)%3B there are two active sites%2C one for aminoacylation and one for editing%3B class-I aminoacyl-tRNA synthetase family type 1 subfamily%3B some organisms carry two different copies of this enzyme;gbkey=CDS;gene=ileS;product=isoleucyl-tRNA synthetase;protein_id=WP_001286850.1;transl_table=11 NC_008258.1 RefSeq gene 24228 24722 . + . ID=gene25;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=SFV_RS00130;old_locus_tag=SFV_0021 NC_008258.1 Protein Homology CDS 24228 24722 . + 0 ID=cds25;Parent=gene25;Dbxref=Genbank:WP_000083366.1;Name=WP_000083366.1;Note=lipoprotein signal peptidase%3B integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis;gbkey=CDS;gene=lspA;product=lipoprotein signal peptidase;protein_id=WP_000083366.1;transl_table=11 NC_008258.1 RefSeq gene 24809 25258 . + . ID=gene26;Name=SFV_RS00135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00135;old_locus_tag=SFV_0022 NC_008258.1 Protein Homology CDS 24809 25258 . + 0 ID=cds26;Parent=gene26;Dbxref=Genbank:WP_000004655.1;Name=WP_000004655.1;Note=rotamase%3B accelerates isomerization of the peptidyl prolyl bond%2C involved in the folding of proteases;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000004655.1;transl_table=11 NC_008258.1 RefSeq gene 25260 26210 . + . ID=gene27;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;gene_synonym=lytB;locus_tag=SFV_RS00140;old_locus_tag=SFV_0023 NC_008258.1 Protein Homology CDS 25260 26210 . + 0 ID=cds27;Parent=gene27;Dbxref=Genbank:WP_001166389.1;Name=WP_001166389.1;Note=catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP)%3B functions in the nonmevalonate isoprenoid biosynthesis pathway;gbkey=CDS;gene=ispH;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=WP_001166389.1;transl_table=11 NC_008258.1 RefSeq gene 26276 27190 . + . ID=gene28;Name=SFV_RS00145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00145;old_locus_tag=SFV_0024 NC_008258.1 Protein Homology CDS 26276 27190 . + 0 ID=cds28;Parent=gene28;Dbxref=Genbank:WP_001239124.1;Name=WP_001239124.1;Note=catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides;gbkey=CDS;product=non-specific ribonucleoside hydrolase RihC;protein_id=WP_001239124.1;transl_table=11 NC_008258.1 RefSeq gene 27357 28178 . + . ID=gene29;Name=SFV_RS00150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00150;old_locus_tag=SFV_0025 NC_008258.1 Protein Homology CDS 27357 28178 . + 0 ID=cds29;Parent=gene29;Dbxref=Genbank:WP_000543585.1;Name=WP_000543585.1;Note=catalyzes the reduction of 2%2C3-dihydrodipicolinate to 2%2C3%2C4%2C5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate reductase;protein_id=WP_000543585.1;transl_table=11 NC_008258.1 RefSeq gene 28223 28387 . - . ID=gene30;Name=SFV_RS00155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS00155;pseudo=true NC_008258.1 Protein Homology CDS 28223 28387 . - 0 ID=cds30;Parent=gene30;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(28316..28318)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 28421 28516 . - . ID=gene31;Name=SFV_RS00160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00160 NC_008258.1 Protein Homology CDS 28421 28516 . - 0 ID=cds31;Parent=gene31;Dbxref=Genbank:WP_032155631.1;Name=WP_032155631.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155631.1;transl_table=11 NC_008258.1 RefSeq gene 28634 29782 . + . ID=gene32;Name=SFV_RS00165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00165;old_locus_tag=SFV_0026 NC_008258.1 Protein Homology CDS 28634 29782 . + 0 ID=cds32;Parent=gene32;Dbxref=Genbank:WP_005086795.1;Name=WP_005086795.1;Note=catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways%3B forms an octamer composed of four CarAB dimers;gbkey=CDS;product=carbamoyl phosphate synthase small subunit;protein_id=WP_005086795.1;transl_table=11 NC_008258.1 RefSeq gene 29800 33021 . + . ID=gene33;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=SFV_RS00170;old_locus_tag=SFV_0027 NC_008258.1 Protein Homology CDS 29800 33021 . + 0 ID=cds33;Parent=gene33;Dbxref=Genbank:WP_001126371.1;Name=WP_001126371.1;Note=four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate%3B CarB is responsible for the amidotransferase activity;gbkey=CDS;gene=carB;product=carbamoyl-phosphate synthase large chain;protein_id=WP_001126371.1;transl_table=11 NC_008258.1 RefSeq gene 33069 33248 . - . ID=gene34;Name=SFV_RS00175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00175 NC_008258.1 Protein Homology CDS 33069 33248 . - 0 ID=cds34;Parent=gene34;Dbxref=Genbank:WP_000196535.1;Name=WP_000196535.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000196535.1;transl_table=11 NC_008258.1 RefSeq gene 33283 33678 . + . ID=gene35;Name=SFV_RS00180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00180 NC_008258.1 Protein Homology CDS 33283 33678 . + 0 ID=cds35;Parent=gene35;Dbxref=Genbank:WP_000333125.1;Name=WP_000333125.1;Note=regulator of carnitine metabolism%3B induces the caiTABCDE and fixABCX operons;gbkey=CDS;product=transcriptional activatory protein CaiF;protein_id=WP_000333125.1;transl_table=11 NC_008258.1 RefSeq gene 33764 34354 . - . ID=gene36;Name=SFV_RS00185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00185;old_locus_tag=SFV_0029 NC_008258.1 Protein Homology CDS 33764 34354 . - 0 ID=cds36;Parent=gene36;Dbxref=Genbank:WP_000122884.1;Name=WP_000122884.1;Note=involved in the synthesis of a cofactor required for carnitine dehydratase and carnitine racemase activities;gbkey=CDS;product=carnitine operon protein CaiE;protein_id=WP_000122884.1;transl_table=11 NC_008258.1 RefSeq gene 34360 35145 . - . ID=gene37;Name=SFV_RS00190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00190;old_locus_tag=SFV_0030 NC_008258.1 Protein Homology CDS 34360 35145 . - 0 ID=cds37;Parent=gene37;Dbxref=Genbank:WP_005053639.1;Name=WP_005053639.1;Note=catalyzes the dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA;gbkey=CDS;product=carnitinyl-CoA dehydratase;protein_id=WP_005053639.1;transl_table=11 NC_008258.1 RefSeq gene 35274 36806 . - . ID=gene38;Name=caiC;gbkey=Gene;gene=caiC;gene_biotype=protein_coding;locus_tag=SFV_RS00195;old_locus_tag=SFV_0031 NC_008258.1 Protein Homology CDS 35274 36806 . - 0 ID=cds38;Parent=gene38;Dbxref=Genbank:WP_005104765.1;Name=WP_005104765.1;gbkey=CDS;gene=caiC;product=crotonobetaine/carnitine-CoA ligase;protein_id=WP_005104765.1;transl_table=11 NC_008258.1 RefSeq gene 36880 38097 . - . ID=gene39;Name=SFV_RS00200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00200;old_locus_tag=SFV_0032 NC_008258.1 Protein Homology CDS 36880 38097 . - 0 ID=cds39;Parent=gene39;Dbxref=Genbank:WP_000349935.1;Name=WP_000349935.1;Note=catalyzes formation of L-carnitinyl-CoA by transfering the CoA moiety from gamma-butyrobetainyl-CoA%2C also catalyzes the formation of crotonobetainyl-CoA by transfer of CoA from gamma-butyrobetainyl-CoA or L-carnitinyl-CoA to crotonobetaine;gbkey=CDS;product=L-carnitine CoA-transferase;protein_id=WP_000349935.1;transl_table=11 NC_008258.1 RefSeq gene 38226 39368 . - . ID=gene40;Name=SFV_RS00205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00205;old_locus_tag=SFV_0033 NC_008258.1 Protein Homology CDS 38226 39368 . - 0 ID=cds40;Parent=gene40;Dbxref=Genbank:WP_000347120.1;Name=WP_000347120.1;Note=catalyzes the reduction of crotonobetainyl-CoA to gamma-butyrobetainyl-CoA;gbkey=CDS;product=crotonobetainyl-CoA dehydrogenase;protein_id=WP_000347120.1;transl_table=11 NC_008258.1 RefSeq gene 39399 40913 . - . ID=gene41;Name=SFV_RS00210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00210;old_locus_tag=SFV_0034 NC_008258.1 Protein Homology CDS 39399 40913 . - 0 ID=cds41;Parent=gene41;Dbxref=Genbank:WP_000787095.1;Name=WP_000787095.1;Note=catalyzes the exchange of L-carnitine for gamma-butyrobetaine in carnitine metabolism;gbkey=CDS;product=L-carnitine/gamma-butyrobetaine antiporter;protein_id=WP_000787095.1;transl_table=11 NC_008258.1 RefSeq gene 41385 42155 . + . ID=gene42;Name=SFV_RS00215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00215;old_locus_tag=SFV_0035 NC_008258.1 Protein Homology CDS 41385 42155 . + 0 ID=cds42;Parent=gene42;Dbxref=Genbank:WP_000692206.1;Name=WP_000692206.1;Note=required for anaerobic carnitine reduction%2C may act to transfer electrons to crotonobetaine reductase;gbkey=CDS;product=protein FixA;protein_id=WP_000692206.1;transl_table=11 NC_008258.1 RefSeq gene 42170 43111 . + . ID=gene43;Name=SFV_RS00220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS00220;pseudo=true NC_008258.1 Protein Homology CDS 42170 43111 . + 0 ID=cds43;Parent=gene43;gbkey=CDS;product=nitrogen fixation protein FixB;pseudo=true;transl_except=(pos:42959..42961%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 43162 44448 . + . ID=gene44;Name=SFV_RS00225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00225;old_locus_tag=SFV_0037 NC_008258.1 Protein Homology CDS 43162 44448 . + 0 ID=cds44;Parent=gene44;Dbxref=Genbank:WP_001287727.1;Name=WP_001287727.1;Note=FAD/NAD(P)-binding domain%3B possibly part of an electron transfer system required for anaerobic carnitine reduction;gbkey=CDS;product=protein FixC;protein_id=WP_001287727.1;transl_table=11 NC_008258.1 RefSeq gene 44445 44732 . + . ID=gene45;Name=SFV_RS00230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00230;old_locus_tag=SFV_0038 NC_008258.1 Protein Homology CDS 44445 44732 . + 0 ID=cds45;Parent=gene45;Dbxref=Genbank:WP_000203747.1;Name=WP_000203747.1;gbkey=CDS;product=ferredoxin-like protein FixX;protein_id=WP_000203747.1;transl_table=11 NC_008258.1 RefSeq gene 44791 46185 . + . ID=gene46;Name=SFV_RS00235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00235;old_locus_tag=SFV_0039 NC_008258.1 Protein Homology CDS 44791 46185 . + 0 ID=cds46;Parent=gene46;Dbxref=Genbank:WP_001183183.1;Name=WP_001183183.1;gbkey=CDS;product=transporter;protein_id=WP_001183183.1;transl_table=11 NC_008258.1 RefSeq gene 46233 46763 . + . ID=gene47;Name=SFV_RS00240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00240;old_locus_tag=SFV_0040 NC_008258.1 Protein Homology CDS 46233 46763 . + 0 ID=cds47;Parent=gene47;Dbxref=Genbank:WP_000600737.1;Name=WP_000600737.1;Note=Required for full activity of KefC%2C a potassium-proton antiporter;gbkey=CDS;product=glutathione-regulated potassium-efflux system ancillary protein KefF;protein_id=WP_000600737.1;transl_table=11 NC_008258.1 RefSeq gene 46756 48618 . + . ID=gene48;Name=SFV_RS00245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00245;old_locus_tag=SFV_0041 NC_008258.1 Protein Homology CDS 46756 48618 . + 0 ID=cds48;Parent=gene48;Dbxref=Genbank:WP_000377180.1;Name=WP_000377180.1;Note=transport system that facilitates potassium-efflux;gbkey=CDS;product=glutathione-regulated potassium-efflux system protein KefC;protein_id=WP_000377180.1;transl_table=11 NC_008258.1 RefSeq gene 48675 48812 . + . ID=gene49;Name=SFV_RS00250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00250 NC_008258.1 Protein Homology CDS 48675 48812 . + 0 ID=cds49;Parent=gene49;Dbxref=Genbank:WP_001255305.1;Name=WP_001255305.1;gbkey=CDS;product=dihydrofolate reductase;protein_id=WP_001255305.1;transl_table=11 NC_008258.1 RefSeq gene 48809 49288 . + . ID=gene50;Name=folA;gbkey=Gene;gene=folA;gene_biotype=protein_coding;locus_tag=SFV_RS00255;old_locus_tag=SFV_0042 NC_008258.1 Protein Homology CDS 48809 49288 . + 0 ID=cds50;Parent=gene50;Dbxref=Genbank:WP_000624375.1;Name=WP_000624375.1;Note=catalyzes the reduction of dihydrofolate to tetrahydrofolate;gbkey=CDS;gene=folA;product=dihydrofolate reductase;protein_id=WP_000624375.1;transl_table=11 NC_008258.1 RefSeq gene 49366 50208 . - . ID=gene51;Name=apaH;gbkey=Gene;gene=apaH;gene_biotype=protein_coding;locus_tag=SFV_RS00260;old_locus_tag=SFV_0043 NC_008258.1 Protein Homology CDS 49366 50208 . - 0 ID=cds51;Parent=gene51;Dbxref=Genbank:WP_000257186.1;Name=WP_000257186.1;Note=hydrolyzes P(1)%2CP(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP;gbkey=CDS;gene=apaH;product=bis(5'-nucleosyl)-tetraphosphatase symmetrical;protein_id=WP_000257186.1;transl_table=11 NC_008258.1 RefSeq gene 50215 50592 . - . ID=gene52;Name=apaG;gbkey=Gene;gene=apaG;gene_biotype=protein_coding;locus_tag=SFV_RS00265;old_locus_tag=SFV_0044 NC_008258.1 Protein Homology CDS 50215 50592 . - 0 ID=cds52;Parent=gene52;Dbxref=Genbank:WP_000610901.1;Name=WP_000610901.1;Note=protein associated with Co2+ and Mg2+ efflux;gbkey=CDS;gene=apaG;product=protein ApaG;protein_id=WP_000610901.1;transl_table=11 NC_008258.1 RefSeq gene 50595 51416 . - . ID=gene53;Name=ksgA;gbkey=Gene;gene=ksgA;gene_biotype=protein_coding;locus_tag=SFV_RS00270;old_locus_tag=SFV_0045 NC_008258.1 Protein Homology CDS 50595 51416 . - 0 ID=cds53;Parent=gene53;Dbxref=Genbank:WP_001065381.1;Name=WP_001065381.1;Note=in Escherichia coli this enzyme catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA%3B mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin%3B members of this protein family have secondary functions;gbkey=CDS;gene=ksgA;product=ribosomal RNA small subunit methyltransferase A;protein_id=WP_001065381.1;transl_table=11 NC_008258.1 RefSeq gene 51413 52402 . - . ID=gene54;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=SFV_RS00275;old_locus_tag=SFV_0046 NC_008258.1 Protein Homology CDS 51413 52402 . - 0 ID=cds54;Parent=gene54;Dbxref=Genbank:WP_000241261.1;Name=WP_000241261.1;Note=catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate);gbkey=CDS;gene=pdxA;product=4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=WP_000241261.1;transl_table=11 NC_008258.1 RefSeq gene 52402 53688 . - . ID=gene55;Name=SFV_RS00280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00280;old_locus_tag=SFV_0047 NC_008258.1 Protein Homology CDS 52402 53688 . - 0 ID=cds55;Parent=gene55;Dbxref=Genbank:WP_000800457.1;Name=WP_000800457.1;Note=Chaperone involved in the folding of extracytoplasmic proteins%2C especially OmpA%2C OmpF and LamB;gbkey=CDS;product=chaperone SurA;protein_id=WP_000800457.1;transl_table=11 NC_008258.1 RefSeq gene 53741 56095 . - . ID=gene56;Name=SFV_RS00285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00285;old_locus_tag=SFV_0048 NC_008258.1 Protein Homology CDS 53741 56095 . - 0 ID=cds56;Parent=gene56;Dbxref=Genbank:WP_000746144.1;Name=WP_000746144.1;Note=is involved in outer membrane permeability;gbkey=CDS;product=LPS-assembly protein LptD;protein_id=WP_000746144.1;transl_table=11 NC_008258.1 RefSeq gene 56350 57165 . + . ID=gene57;Name=djlA;gbkey=Gene;gene=djlA;gene_biotype=protein_coding;locus_tag=SFV_RS00290;old_locus_tag=SFV_0049 NC_008258.1 Protein Homology CDS 56350 57165 . + 0 ID=cds57;Parent=gene57;Dbxref=Genbank:WP_001200573.1;Name=WP_001200573.1;Note=functions as a co-chaperone with DnaK%3B involved in regulation of colanic acid capsule%3B inner membrane protein%3B dimerized via transmembrane domain%3B J-like domain is cytoplasmic and can functionally substitute for DnaJ%3B stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system;gbkey=CDS;gene=djlA;product=dnaJ-like protein DjlA;protein_id=WP_001200573.1;transl_table=11 NC_008258.1 RefSeq gene 57282 57941 . - . ID=gene58;Name=SFV_RS00295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00295;old_locus_tag=SFV_0050 NC_008258.1 Protein Homology CDS 57282 57941 . - 0 ID=cds58;Parent=gene58;Dbxref=Genbank:WP_000525176.1;Name=WP_000525176.1;Note=catalyzes the synthesis of pseudouridine from uracil-746 in 23S ribosomal RNA and from uracil-32 in the anticodon stem and loop of transfer RNAs;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase A;protein_id=WP_000525176.1;transl_table=11 NC_008258.1 RefSeq gene 57953 60859 . - . ID=gene59;Name=SFV_RS00300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00300;old_locus_tag=SFV_0051 NC_008258.1 Protein Homology CDS 57953 60859 . - 0 ID=cds59;Parent=gene59;Dbxref=Genbank:WP_001117023.1;Name=WP_001117023.1;Note=transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP%2C when it is trapped or immobilized on tightly supercoiled DNA;gbkey=CDS;product=RNA polymerase-associated protein RapA;protein_id=WP_001117023.1;transl_table=11 NC_008258.1 RefSeq gene 61024 63375 . - . ID=gene60;Name=SFV_RS00305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00305;old_locus_tag=SFV_0052 NC_008258.1 Protein Homology CDS 61024 63375 . - 0 ID=cds60;Parent=gene60;Dbxref=Genbank:WP_000035613.1;Name=WP_000035613.1;Note=Has polymerase%2C DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C;gbkey=CDS;product=DNA polymerase II;protein_id=WP_000035613.1;transl_table=11 NC_008258.1 RefSeq gene 63450 64145 . - . ID=gene61;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=SFV_RS00310;old_locus_tag=SFV_0053 NC_008258.1 Protein Homology CDS 63450 64145 . - 0 ID=cds61;Parent=gene61;Dbxref=Genbank:WP_000910215.1;Name=WP_000910215.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase;protein_id=WP_000910215.1;transl_table=11 NC_008258.1 RefSeq gene 64345 65847 . - . ID=gene62;Name=SFV_RS00315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00315;old_locus_tag=SFV_0054 NC_008258.1 Protein Homology CDS 64345 65847 . - 0 ID=cds62;Parent=gene62;Dbxref=Genbank:WP_000963945.1;Name=WP_000963945.1;Note=catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism;gbkey=CDS;product=L-arabinose isomerase;protein_id=WP_000963945.1;transl_table=11 NC_008258.1 RefSeq gene 65858 67558 . - . ID=gene63;Name=SFV_RS00320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00320;old_locus_tag=SFV_0055 NC_008258.1 Protein Homology CDS 65858 67558 . - 0 ID=cds63;Parent=gene63;Dbxref=Genbank:WP_000951767.1;Name=WP_000951767.1;Note=catalyzes the phosphorylation of ribulose to ribulose 5-phosphate;gbkey=CDS;product=ribulokinase;protein_id=WP_000951767.1;transl_table=11 NC_008258.1 RefSeq gene 67897 68775 . + . ID=gene64;Name=SFV_RS00325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00325;old_locus_tag=SFV_0056 NC_008258.1 Protein Homology CDS 67897 68775 . + 0 ID=cds64;Parent=gene64;Dbxref=Genbank:WP_005065955.1;Name=WP_005065955.1;Note=positive and negative regulator%3B regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005065955.1;transl_table=11 NC_008258.1 RefSeq gene 68861 69625 . + . ID=gene65;Name=SFV_RS00330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00330;old_locus_tag=SFV_0057 NC_008258.1 Protein Homology CDS 68861 69625 . + 0 ID=cds65;Parent=gene65;Dbxref=Genbank:WP_001148403.1;Name=WP_001148403.1;gbkey=CDS;product=membrane protein;protein_id=WP_001148403.1;transl_table=11 NC_008258.1 RefSeq gene 69739 70437 . - . ID=gene66;Name=thiQ;gbkey=Gene;gene=thiQ;gene_biotype=protein_coding;locus_tag=SFV_RS00335;old_locus_tag=SFV_0058 NC_008258.1 Protein Homology CDS 69739 70437 . - 0 ID=cds66;Parent=gene66;Dbxref=Genbank:WP_000916320.1;Name=WP_000916320.1;Note=with TbpA and ThiP is part of the thiamine and TPP transport system;gbkey=CDS;gene=thiQ;product=thiamine import ATP-binding protein ThiQ;protein_id=WP_000916320.1;transl_table=11 NC_008258.1 RefSeq gene 70421 72031 . - . ID=gene67;Name=thiP;gbkey=Gene;gene=thiP;gene_biotype=protein_coding;gene_synonym=sfuB;locus_tag=SFV_RS00340;old_locus_tag=SFV_0059 NC_008258.1 Protein Homology CDS 70421 72031 . - 0 ID=cds67;Parent=gene67;Dbxref=Genbank:WP_000235651.1;Name=WP_000235651.1;Note=permease%3B with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell%3B repressed in presence of exogenous thiamine;gbkey=CDS;gene=thiP;product=thiamine transporter membrane protein;protein_id=WP_000235651.1;transl_table=11 NC_008258.1 RefSeq gene 72007 72990 . - . ID=gene68;Name=tbpA;gbkey=Gene;gene=tbpA;gene_biotype=protein_coding;locus_tag=SFV_RS00345;old_locus_tag=SFV_0060 NC_008258.1 Protein Homology CDS 72007 72990 . - 0 ID=cds68;Parent=gene68;Dbxref=Genbank:WP_005104772.1;Name=WP_005104772.1;Note=part of the thiamine and TPP transport system tbpA-thiPQ;gbkey=CDS;gene=tbpA;product=thiamine ABC transporter substrate-binding protein;protein_id=WP_005104772.1;transl_table=11 NC_008258.1 RefSeq gene 73154 74809 . - . ID=gene69;Name=SFV_RS00350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00350;old_locus_tag=SFV_0061 NC_008258.1 Protein Homology CDS 73154 74809 . - 0 ID=cds69;Parent=gene69;Dbxref=Genbank:WP_005053586.1;Name=WP_005053586.1;Note=activates sgrS under glucose-phosphate stress conditions;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005053586.1;transl_table=11 NC_008258.1 RefSeq gene 74898 75029 . + . ID=gene70;Name=SFV_RS00355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00355 NC_008258.1 Protein Homology CDS 74898 75029 . + 0 ID=cds70;Parent=gene70;Dbxref=Genbank:WP_001248770.1;Name=WP_001248770.1;gbkey=CDS;product=inhibitor of glucose uptake;protein_id=WP_001248770.1;transl_table=11 NC_008258.1 RefSeq gene 75131 76309 . + . ID=gene71;Name=SFV_RS00360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS00360;pseudo=true NC_008258.1 Protein Homology CDS 75131 76309 . + 0 ID=cds71;Parent=gene71;gbkey=CDS;product=sugar transporter;pseudo=true;transl_except=(pos:75560..75562%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 76358 76963 . - . ID=gene72;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=SFV_RS00365;old_locus_tag=SFV_0063 NC_008258.1 Protein Homology CDS 76358 76963 . - 0 ID=cds72;Parent=gene72;Dbxref=Genbank:WP_000818230.1;Name=WP_000818230.1;Note=catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis%3B forms a heterodimer of LeuC/D;gbkey=CDS;gene=leuD;product=3-isopropylmalate dehydratase small subunit;protein_id=WP_000818230.1;transl_table=11 NC_008258.1 RefSeq gene 76974 78374 . - . ID=gene73;Name=SFV_RS00370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00370;old_locus_tag=SFV_0064 NC_008258.1 Protein Homology CDS 76974 78374 . - 0 ID=cds73;Parent=gene73;Dbxref=Genbank:WP_001140650.1;Name=WP_001140650.1;Note=dehydratase component%2C catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate;gbkey=CDS;product=3-isopropylmalate dehydratase large subunit;protein_id=WP_001140650.1;transl_table=11 NC_008258.1 RefSeq gene 78377 79468 . - . ID=gene74;Name=SFV_RS00375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00375;old_locus_tag=SFV_0065 NC_008258.1 Protein Homology CDS 78377 79468 . - 0 ID=cds74;Parent=gene74;Dbxref=Genbank:WP_000042384.1;Name=WP_000042384.1;gbkey=CDS;product=3-isopropylmalate dehydrogenase;protein_id=WP_000042384.1;transl_table=11 NC_008258.1 RefSeq gene 79468 81039 . - . ID=gene75;Name=SFV_RS00380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00380;old_locus_tag=SFV_0066 NC_008258.1 Protein Homology CDS 79468 81039 . - 0 ID=cds75;Parent=gene75;Dbxref=Genbank:WP_000082860.1;Name=WP_000082860.1;gbkey=CDS;product=2-isopropylmalate synthase;protein_id=WP_000082860.1;transl_table=11 NC_008258.1 RefSeq gene 81132 81218 . - . ID=gene76;Name=SFV_RS00385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00385 NC_008258.1 Protein Homology CDS 81132 81218 . - 0 ID=cds76;Parent=gene76;Dbxref=Genbank:WP_001300467.1;Name=WP_001300467.1;Note=involved in attenuation control of the leuABCD operon in leucine biosynthesis;gbkey=CDS;product=leu operon leader peptide;protein_id=WP_001300467.1;transl_table=11 NC_008258.1 RefSeq gene 81879 82823 . + . ID=gene77;Name=leuO;gbkey=Gene;gene=leuO;gene_biotype=protein_coding;locus_tag=SFV_RS00390;old_locus_tag=SFV_0067 NC_008258.1 Protein Homology CDS 81879 82823 . + 0 ID=cds77;Parent=gene77;Dbxref=Genbank:WP_024260215.1;Name=WP_024260215.1;Note=activator for leuABCD operon%3B member of LysR family of transcriptional activators;gbkey=CDS;gene=leuO;product=transcriptional regulator;protein_id=WP_024260215.1;transl_table=11 NC_008258.1 RefSeq gene 83141 84865 . + . ID=gene78;Name=SFV_RS00395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00395;old_locus_tag=SFV_0068 NC_008258.1 Protein Homology CDS 83141 84865 . + 0 ID=cds78;Parent=gene78;Dbxref=Genbank:WP_000425636.1;Name=WP_000425636.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%2C leucine sensitive;gbkey=CDS;product=acetolactate synthase;protein_id=WP_000425636.1;transl_table=11 NC_008258.1 RefSeq gene 84868 85359 . + . ID=gene79;Name=ilvH;gbkey=Gene;gene=ilvH;gene_biotype=protein_coding;locus_tag=SFV_RS00400;old_locus_tag=SFV_0069 NC_008258.1 Protein Homology CDS 84868 85359 . + 0 ID=cds79;Parent=gene79;Dbxref=Genbank:WP_001252744.1;Name=WP_001252744.1;Note=with IlvI catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase 3 small subunit;gbkey=CDS;gene=ilvH;product=acetolactate synthase;protein_id=WP_001252744.1;transl_table=11 NC_008258.1 RefSeq gene 85371 85457 . + . ID=gene80;Name=SFV_RS00405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00405;old_locus_tag=SFV_0070 NC_008258.1 Protein Homology CDS 85371 85457 . + 0 ID=cds80;Parent=gene80;Dbxref=Genbank:WP_001303787.1;Name=WP_001303787.1;gbkey=CDS;product=fruR/shl operon leader peptide;protein_id=WP_001303787.1;transl_table=11 NC_008258.1 RefSeq gene 85539 86543 . + . ID=gene81;Name=SFV_RS00410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00410;old_locus_tag=SFV_0071 NC_008258.1 Protein Homology CDS 85539 86543 . + 0 ID=cds81;Parent=gene81;Dbxref=Genbank:WP_000762401.1;Name=WP_000762401.1;Note=binds D-fructose as an inducer%3B involved in regulation of operons for central pathways of carbon metabolism;gbkey=CDS;product=catabolite repressor/activator;protein_id=WP_000762401.1;transl_table=11 NC_008258.1 RefSeq repeat_region 86609 87381 . + . ID=id3;gbkey=repeat_region NC_008258.1 RefSeq region 86611 87378 . + . ID=id4;gbkey=mobile_element NC_008258.1 RefSeq gene 86860 87363 . + . ID=gene82;Name=SFV_RS00415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00415;old_locus_tag=SFV_0073 NC_008258.1 Protein Homology CDS 86860 87363 . + 0 ID=cds82;Parent=gene82;Dbxref=Genbank:WP_005104774.1;Name=WP_005104774.1;gbkey=CDS;product=transposase;protein_id=WP_005104774.1;transl_table=11 NC_008258.1 RefSeq gene 87922 88380 . + . ID=gene83;Name=SFV_RS00420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00420;old_locus_tag=SFV_0074 NC_008258.1 Protein Homology CDS 87922 88380 . + 0 ID=cds83;Parent=gene83;Dbxref=Genbank:WP_005053563.1;Name=WP_005053563.1;Note=MraZ%3B UPF0040%3B crystal structure shows similarity to AbrB;gbkey=CDS;product=transcriptional regulator MraZ;protein_id=WP_005053563.1;transl_table=11 NC_008258.1 RefSeq gene 88382 89323 . + . ID=gene84;Name=SFV_RS00425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00425;old_locus_tag=SFV_0075 NC_008258.1 Protein Homology CDS 88382 89323 . + 0 ID=cds84;Parent=gene84;Dbxref=Genbank:WP_000970468.1;Name=WP_000970468.1;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase H;protein_id=WP_000970468.1;transl_table=11 NC_008258.1 RefSeq gene 89320 89685 . + . ID=gene85;Name=SFV_RS00430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00430;old_locus_tag=SFV_0076 NC_008258.1 Protein Homology CDS 89320 89685 . + 0 ID=cds85;Parent=gene85;Dbxref=Genbank:WP_000625658.1;Name=WP_000625658.1;Note=membrane bound cell division protein at septum containing leucine zipper motif;gbkey=CDS;product=cell division protein FtsL;protein_id=WP_000625658.1;transl_table=11 NC_008258.1 RefSeq gene 89701 91467 . + . ID=gene86;Name=SFV_RS00435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00435;old_locus_tag=SFV_0077 NC_008258.1 Protein Homology CDS 89701 91467 . + 0 ID=cds86;Parent=gene86;Dbxref=Genbank:WP_000642214.1;Name=WP_000642214.1;Note=penicillin-binding protein 3%3B transpeptidase involved in septal peptidoglycan synthesis;gbkey=CDS;product=cell division protein FtsI;protein_id=WP_000642214.1;transl_table=11 NC_008258.1 RefSeq gene 91454 92941 . + . ID=gene87;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=SFV_RS00440;old_locus_tag=SFV_0078 NC_008258.1 Protein Homology CDS 91454 92941 . + 0 ID=cds87;Parent=gene87;Dbxref=Genbank:WP_000785136.1;Name=WP_000785136.1;Note=involved in cell wall formation%3B peptidoglycan synthesis%3B cytoplasmic enzyme%3B catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate;gbkey=CDS;gene=murE;product=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase;protein_id=WP_000785136.1;transl_table=11 NC_008258.1 RefSeq gene 92938 94296 . + . ID=gene88;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=SFV_RS00445;old_locus_tag=SFV_0079 NC_008258.1 Protein Homology CDS 92938 94296 . + 0 ID=cds88;Parent=gene88;Dbxref=Genbank:WP_000626675.1;Name=WP_000626675.1;gbkey=CDS;gene=murF;product=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;protein_id=WP_000626675.1;transl_table=11 NC_008258.1 RefSeq gene 94290 95372 . + . ID=gene89;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=SFV_RS00450;old_locus_tag=SFV_0080 NC_008258.1 Protein Homology CDS 94290 95372 . + 0 ID=cds89;Parent=gene89;Dbxref=Genbank:WP_000964131.1;Name=WP_000964131.1;Note=First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan;gbkey=CDS;gene=mraY;product=phospho-N-acetylmuramoyl-pentapeptide transferase;protein_id=WP_000964131.1;transl_table=11 NC_008258.1 RefSeq gene 95375 96691 . + . ID=gene90;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=SFV_RS00455;old_locus_tag=SFV_0081 NC_008258.1 Protein Homology CDS 95375 96691 . + 0 ID=cds90;Parent=gene90;Dbxref=Genbank:WP_000796449.1;Name=WP_000796449.1;Note=UDP-N-acetylmuramoylalanine--D-glutamate ligase%3B involved in peptidoglycan biosynthesis%3B cytoplasmic%3B catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation;gbkey=CDS;gene=murD;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=WP_000796449.1;transl_table=11 NC_008258.1 RefSeq gene 96691 97935 . + . ID=gene91;Name=SFV_RS00460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00460;old_locus_tag=SFV_0082 NC_008258.1 Protein Homology CDS 96691 97935 . + 0 ID=cds91;Parent=gene91;Dbxref=Genbank:WP_001239796.1;Name=WP_001239796.1;gbkey=CDS;product=cell division protein FtsW;protein_id=WP_001239796.1;transl_table=11 NC_008258.1 RefSeq gene 97932 98999 . + . ID=gene92;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=SFV_RS00465;old_locus_tag=SFV_0083 NC_008258.1 Protein Homology CDS 97932 98999 . + 0 ID=cds92;Parent=gene92;Dbxref=Genbank:WP_000016582.1;Name=WP_000016582.1;Note=N-acetylglucosaminyl transferase%3B UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%3B involved in cell wall formation%3B inner membrane-associated%3B last step of peptidoglycan synthesis;gbkey=CDS;gene=murG;product=UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase;protein_id=WP_000016582.1;transl_table=11 NC_008258.1 RefSeq gene 99053 100528 . + . ID=gene93;Name=SFV_RS00470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00470;old_locus_tag=SFV_0084 NC_008258.1 Protein Homology CDS 99053 100528 . + 0 ID=cds93;Parent=gene93;Dbxref=Genbank:WP_001096033.1;Name=WP_001096033.1;gbkey=CDS;product=UDP-N-acetylmuramate--L-alanine ligase;protein_id=WP_001096033.1;transl_table=11 NC_008258.1 RefSeq gene 100521 101441 . + . ID=gene94;Name=ddl;gbkey=Gene;gene=ddl;gene_biotype=protein_coding;locus_tag=SFV_RS00475;old_locus_tag=SFV_0085 NC_008258.1 Protein Homology CDS 100521 101441 . + 0 ID=cds94;Parent=gene94;Dbxref=Genbank:WP_000130035.1;Name=WP_000130035.1;Note=D-alanine--D-alanine ligase%3B DdlA%3B DdlB%3B cytoplasmic%3B catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis%3B there are two forms of this enzyme in Escherichia coli;gbkey=CDS;gene=ddl;product=D-alanine--D-alanine ligase B;protein_id=WP_000130035.1;transl_table=11 NC_008258.1 RefSeq gene 101443 102273 . + . ID=gene95;Name=SFV_RS00480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00480;old_locus_tag=SFV_0086 NC_008258.1 Protein Homology CDS 101443 102273 . + 0 ID=cds95;Parent=gene95;Dbxref=Genbank:WP_000075754.1;Name=WP_000075754.1;Note=involved in septum formation;gbkey=CDS;product=cell division protein FtsQ;protein_id=WP_000075754.1;transl_table=11 NC_008258.1 RefSeq gene 102270 103532 . + . ID=gene96;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=SFV_RS00485;old_locus_tag=SFV_0087 NC_008258.1 Protein Homology CDS 102270 103532 . + 0 ID=cds96;Parent=gene96;Dbxref=Genbank:WP_000588474.1;Name=WP_000588474.1;Note=ATP-binding involved in recruitment of FtsK to Z ring%3B essential cell division protein%3B colocalizes with FtsZ through direct interaction to the septal ring structure%3B structurally similar to eukaryotic actin%3B binds directly to the cell membrane;gbkey=CDS;gene=ftsA;product=cell division protein FtsA;protein_id=WP_000588474.1;transl_table=11 NC_008258.1 RefSeq gene 103593 104744 . + . ID=gene97;Name=SFV_RS00490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00490;old_locus_tag=SFV_0088 NC_008258.1 Protein Homology CDS 103593 104744 . + 0 ID=cds97;Parent=gene97;Dbxref=Genbank:WP_000462780.1;Name=WP_000462780.1;Note=GTPase%3B similar structure to tubulin%3B forms ring-shaped polymers at the site of cell division%3B other proteins such as FtsA%2C ZipA%2C and ZapA%2C interact with and regulate FtsZ function;gbkey=CDS;product=cell division protein FtsZ;protein_id=WP_000462780.1;transl_table=11 NC_008258.1 RefSeq gene 104845 105762 . + . ID=gene98;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=SFV_RS00495;old_locus_tag=SFV_0089 NC_008258.1 Protein Homology CDS 104845 105762 . + 0 ID=cds98;Parent=gene98;Dbxref=Genbank:WP_000595482.1;Name=WP_000595482.1;Note=zinc-dependent%3B catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis;gbkey=CDS;gene=lpxC;product=UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase;protein_id=WP_000595482.1;transl_table=11 NC_008258.1 RefSeq gene 105993 106505 . + . ID=gene99;Name=SFV_RS00500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00500 NC_008258.1 Protein Homology CDS 105993 106505 . + 0 ID=cds99;Parent=gene99;Dbxref=Genbank:WP_000014321.1;Name=WP_000014321.1;Note=secM translational pause allows for the initiation of secA translation;gbkey=CDS;product=secretion monitor;protein_id=WP_000014321.1;transl_table=11 NC_008258.1 RefSeq gene 106567 109272 . + . ID=gene100;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;gene_synonym=azi,div;locus_tag=SFV_RS00505;old_locus_tag=SFV_0091 NC_008258.1 Protein Homology CDS 106567 109272 . + 0 ID=cds100;Parent=gene100;Dbxref=Genbank:WP_000905789.1;Name=WP_000905789.1;Note=functions in protein export%3B can interact with acidic membrane phospholipids and the SecYEG protein complex%3B binds to preproteins%3B binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein%3B ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane%3B additional proteins SecD/F/YajC aid SecA recycling%3B exists in an equilibrium between monomers and dimers%3B may possibly form higher order oligomers%3B proteins in this cluster correspond SecA1%3B SecA2 is not essential and seems to play a role in secretion of a subset of proteins;gbkey=CDS;gene=secA;product=protein translocase subunit SecA;protein_id=WP_000905789.1;transl_table=11 NC_008258.1 RefSeq gene 109332 109721 . + . ID=gene101;Name=SFV_RS00510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00510;old_locus_tag=SFV_0092 NC_008258.1 Protein Homology CDS 109332 109721 . + 0 ID=cds101;Parent=gene101;Dbxref=Genbank:WP_000736027.1;Name=WP_000736027.1;gbkey=CDS;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_000736027.1;transl_table=11 NC_008258.1 RefSeq gene 109736 109870 . - . ID=gene102;Name=SFV_RS00515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00515 NC_008258.1 Protein Homology CDS 109736 109870 . - 0 ID=cds102;Parent=gene102;Dbxref=Genbank:WP_001303790.1;Name=WP_001303790.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303790.1;transl_table=11 NC_008258.1 RefSeq gene 109821 110018 . - . ID=gene103;Name=SFV_RS00520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00520;old_locus_tag=SFV_0093 NC_008258.1 Protein Homology CDS 109821 110018 . - 0 ID=cds103;Parent=gene103;Dbxref=Genbank:WP_000005042.1;Name=WP_000005042.1;Note=inhibits supercoiling by DNA gyrase by binding to the GyrB subunit;gbkey=CDS;product=DNA gyrase inhibitor YacG;protein_id=WP_000005042.1;transl_table=11 NC_008258.1 RefSeq gene 110028 110771 . - . ID=gene104;Name=SFV_RS00525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00525;old_locus_tag=SFV_0094 NC_008258.1 Protein Homology CDS 110028 110771 . - 0 ID=cds104;Parent=gene104;Dbxref=Genbank:WP_001194738.1;Name=WP_001194738.1;gbkey=CDS;product=cell division protein ZapD;protein_id=WP_001194738.1;transl_table=11 NC_008258.1 RefSeq gene 110771 111391 . - . ID=gene105;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=SFV_RS00530;old_locus_tag=SFV_0095 NC_008258.1 Protein Homology CDS 110771 111391 . - 0 ID=cds105;Parent=gene105;Dbxref=Genbank:WP_000540596.1;Name=WP_000540596.1;Note=catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A%3B involved in coenzyme A biosynthesis;gbkey=CDS;gene=coaE;product=dephospho-CoA kinase;protein_id=WP_000540596.1;transl_table=11 NC_008258.1 RefSeq gene 111616 112659 . + . ID=gene106;Name=SFV_RS00535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00535;old_locus_tag=SFV_0096 NC_008258.1 Protein Homology CDS 111616 112659 . + 0 ID=cds106;Parent=gene106;Dbxref=Genbank:WP_001217322.1;Name=WP_001217322.1;Note=catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate;gbkey=CDS;product=GMP reductase;protein_id=WP_001217322.1;transl_table=11 NC_008258.1 RefSeq gene 112694 113896 . - . ID=gene107;Name=SFV_RS00540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00540;old_locus_tag=SFV_0097 NC_008258.1 Protein Homology CDS 112694 113896 . - 0 ID=cds107;Parent=gene107;Dbxref=Genbank:WP_000157275.1;Name=WP_000157275.1;gbkey=CDS;product=type IV pilin biogenesis protein;protein_id=WP_000157275.1;transl_table=11 NC_008258.1 RefSeq gene 113886 114080 . - . ID=gene108;Name=SFV_RS00545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00545 NC_008258.1 GeneMarkS+ CDS 113886 114080 . - 0 ID=cds108;Parent=gene108;Dbxref=Genbank:WP_000464384.1;Name=WP_000464384.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000464384.1;transl_table=11 NC_008258.1 RefSeq gene 114236 115033 . - . ID=gene109;Name=SFV_RS00550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00550 NC_008258.1 Protein Homology CDS 114236 115033 . - 0 ID=cds109;Parent=gene109;Dbxref=Genbank:WP_005053533.1;Name=WP_005053533.1;gbkey=CDS;product=pilus assembly protein TapB;protein_id=WP_005053533.1;transl_table=11 NC_008258.1 RefSeq gene 115043 115483 . - . ID=gene110;Name=SFV_RS00555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00555;old_locus_tag=SFV_0099 NC_008258.1 Protein Homology CDS 115043 115483 . - 0 ID=cds110;Parent=gene110;Dbxref=Genbank:WP_000360918.1;Name=WP_000360918.1;gbkey=CDS;product=major pilin subunit;protein_id=WP_000360918.1;transl_table=11 NC_008258.1 RefSeq gene 115508 115729 . + . ID=gene111;Name=SFV_RS00560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00560 NC_008258.1 Protein Homology CDS 115508 115729 . + 0 ID=cds111;Parent=gene111;Dbxref=Genbank:WP_032155552.1;Name=WP_032155552.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155552.1;transl_table=11 NC_008258.1 RefSeq gene 115686 116579 . - . ID=gene112;Name=SFV_RS00565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00565;old_locus_tag=SFV_0100 NC_008258.1 Protein Homology CDS 115686 116579 . - 0 ID=cds112;Parent=gene112;Dbxref=Genbank:WP_001135168.1;Name=WP_001135168.1;Note=catalyzes the formation of pyridine-2%2C3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide;gbkey=CDS;product=nicotinate-nucleotide pyrophosphorylase;protein_id=WP_001135168.1;transl_table=11 NC_008258.1 RefSeq gene 116667 117218 . + . ID=gene113;Name=SFV_RS00570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00570;old_locus_tag=SFV_0101 NC_008258.1 Protein Homology CDS 116667 117218 . + 0 ID=cds113;Parent=gene113;Dbxref=Genbank:WP_000923711.1;Name=WP_000923711.1;gbkey=CDS;product=N-acetyl-anhydromuranmyl-L-alanine amidase;protein_id=WP_000923711.1;transl_table=11 NC_008258.1 RefSeq gene 117215 118069 . + . ID=gene114;Name=SFV_RS00575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00575;old_locus_tag=SFV_0102 NC_008258.1 Protein Homology CDS 117215 118069 . + 0 ID=cds114;Parent=gene114;Dbxref=Genbank:WP_000172005.1;Name=WP_000172005.1;Note=involved in regulation of beta-lactamase%3B putative signaling protein;gbkey=CDS;product=protein AmpE;protein_id=WP_000172005.1;transl_table=11 NC_008258.1 RefSeq gene 118112 119482 . - . ID=gene115;Name=SFV_RS00580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00580;old_locus_tag=SFV_0103 NC_008258.1 Protein Homology CDS 118112 119482 . - 0 ID=cds115;Parent=gene115;Dbxref=Genbank:WP_000399027.1;Name=WP_000399027.1;gbkey=CDS;product=aromatic amino acid transporter;protein_id=WP_000399027.1;transl_table=11 NC_008258.1 RefSeq gene 120026 120790 . + . ID=gene116;Name=pdhR;gbkey=Gene;gene=pdhR;gene_biotype=protein_coding;locus_tag=SFV_RS00585;old_locus_tag=SFV_0104 NC_008258.1 Protein Homology CDS 120026 120790 . + 0 ID=cds116;Parent=gene116;Dbxref=Genbank:WP_000331766.1;Name=WP_000331766.1;Note=activates lctPRD operon%3B autoregulates itself through repression of pdhR-aceEF-lpdA operon%3B regulates pyruvate dehydrogenase complex;gbkey=CDS;gene=pdhR;product=transcriptional regulator;protein_id=WP_000331766.1;transl_table=11 NC_008258.1 RefSeq gene 120951 123614 . + . ID=gene117;Name=aceE;gbkey=Gene;gene=aceE;gene_biotype=protein_coding;locus_tag=SFV_RS00590;old_locus_tag=SFV_0105 NC_008258.1 Protein Homology CDS 120951 123614 . + 0 ID=cds117;Parent=gene117;Dbxref=Genbank:WP_000003826.1;Name=WP_000003826.1;Note=E1 component%3B part of pyruvate dehydrogenase%3B forms a complex with DlaT and LpdC;gbkey=CDS;gene=aceE;product=pyruvate dehydrogenase;protein_id=WP_000003826.1;transl_table=11 NC_008258.1 RefSeq gene 123629 125509 . + . ID=gene118;Name=aceF;gbkey=Gene;gene=aceF;gene_biotype=protein_coding;locus_tag=SFV_RS00595;old_locus_tag=SFV_0106 NC_008258.1 Protein Homology CDS 123629 125509 . + 0 ID=cds118;Parent=gene118;Dbxref=Genbank:WP_000963541.1;Name=WP_000963541.1;Note=E2 component of pyruvate dehydrogenase multienzyme complex%3B in Escherichia coli AceF contains three N-terminal lipoyl domains;gbkey=CDS;gene=aceF;product=dihydrolipoamide acetyltransferase;protein_id=WP_000963541.1;transl_table=11 NC_008258.1 RefSeq gene 125834 127258 . + . ID=gene119;Name=SFV_RS00600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00600;old_locus_tag=SFV_0107 NC_008258.1 Protein Homology CDS 125834 127258 . + 0 ID=cds119;Parent=gene119;Dbxref=Genbank:WP_000102485.1;Name=WP_000102485.1;Note=E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex%3B catalyzes the oxidation of dihydrolipoamide to lipoamide;gbkey=CDS;product=dihydrolipoyl dehydrogenase;protein_id=WP_000102485.1;transl_table=11 NC_008258.1 RefSeq gene 127329 129182 . - . ID=gene120;Name=SFV_RS00605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00605;old_locus_tag=SFV_0108 NC_008258.1 Protein Homology CDS 127329 129182 . - 0 ID=cds120;Parent=gene120;Dbxref=Genbank:WP_000784432.1;Name=WP_000784432.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000784432.1;transl_table=11 NC_008258.1 RefSeq gene 129537 132134 . + . ID=gene121;Name=SFV_RS00610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00610;old_locus_tag=SFV_0109 NC_008258.1 Protein Homology CDS 129537 132134 . + 0 ID=cds121;Parent=gene121;Dbxref=Genbank:WP_044023748.1;Name=WP_044023748.1;Note=catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate;gbkey=CDS;product=bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase;protein_id=WP_044023748.1;transl_table=11 NC_008258.1 RefSeq gene 132309 132671 . + . ID=gene122;Name=SFV_RS00615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00615;old_locus_tag=SFV_0110 NC_008258.1 Protein Homology CDS 132309 132671 . + 0 ID=cds122;Parent=gene122;Dbxref=Genbank:WP_005053505.1;Name=WP_005053505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005053505.1;transl_table=11 NC_008258.1 RefSeq gene 132709 133503 . - . ID=gene123;Name=SFV_RS00620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00620;old_locus_tag=SFV_0111 NC_008258.1 Protein Homology CDS 132709 133503 . - 0 ID=cds123;Parent=gene123;Dbxref=Genbank:WP_000734287.1;Name=WP_000734287.1;Note=S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine;gbkey=CDS;product=S-adenosylmethionine decarboxylase proenzyme;protein_id=WP_000734287.1;transl_table=11 NC_008258.1 RefSeq gene 133519 134385 . - . ID=gene124;Name=SFV_RS00625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00625;old_locus_tag=SFV_0112 NC_008258.1 Protein Homology CDS 133519 134385 . - 0 ID=cds124;Parent=gene124;Dbxref=Genbank:WP_000818422.1;Name=WP_000818422.1;gbkey=CDS;product=polyamine aminopropyltransferase;protein_id=WP_000818422.1;transl_table=11 NC_008258.1 RefSeq gene 134491 134838 . - . ID=gene125;Name=SFV_RS00630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00630 NC_008258.1 Protein Homology CDS 134491 134838 . - 0 ID=cds125;Parent=gene125;Dbxref=Genbank:WP_024260217.1;Name=WP_024260217.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260217.1;transl_table=11 NC_008258.1 RefSeq gene 135004 136554 . + . ID=gene126;Name=SFV_RS00635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00635;old_locus_tag=SFV_0113 NC_008258.1 Protein Homology CDS 135004 136554 . + 0 ID=cds126;Parent=gene126;Dbxref=Genbank:WP_001189592.1;Name=WP_001189592.1;Note=laccase%3B copper-stimulated phenoloxidase and ferroxidase which may be involved in copper detoxification;gbkey=CDS;product=multicopper oxidase;protein_id=WP_001189592.1;transl_table=11 NC_008258.1 RefSeq gene 136601 138991 . - . ID=gene127;Name=SFV_RS00640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00640;old_locus_tag=SFV_0115 NC_008258.1 Protein Homology CDS 136601 138991 . - 0 ID=cds127;Parent=gene127;Dbxref=Genbank:WP_024260218.1;Name=WP_024260218.1;Note=quinoprotein glucose dehydrogenase%3B catalyzes the formation of D-glucono-1%2C5-lactone from D-glucose and ubiquinone;gbkey=CDS;product=glucose dehydrogenase;protein_id=WP_024260218.1;transl_table=11 NC_008258.1 RefSeq gene 139197 139733 . + . ID=gene128;Name=SFV_RS00645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00645;old_locus_tag=SFV_0116 NC_008258.1 Protein Homology CDS 139197 139733 . + 0 ID=cds128;Parent=gene128;Dbxref=Genbank:WP_000683335.1;Name=WP_000683335.1;Note=catalyzes the formation of inosine monophosphate from hypoxanthine and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;product=hypoxanthine phosphoribosyltransferase;protein_id=WP_000683335.1;transl_table=11 NC_008258.1 RefSeq gene 139774 140436 . - . ID=gene129;Name=SFV_RS00650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00650;old_locus_tag=SFV_0117 NC_008258.1 Protein Homology CDS 139774 140436 . - 0 ID=cds129;Parent=gene129;Dbxref=Genbank:WP_000651599.1;Name=WP_000651599.1;Note=catalyzes the interconversion of bicarbonate and carbon dioxide;gbkey=CDS;product=carbonic anhydrase;protein_id=WP_000651599.1;transl_table=11 NC_008258.1 RefSeq gene 140545 141471 . + . ID=gene130;Name=SFV_RS00655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00655;old_locus_tag=SFV_0118 NC_008258.1 Protein Homology CDS 140545 141471 . + 0 ID=cds130;Parent=gene130;Dbxref=Genbank:WP_000150612.1;Name=WP_000150612.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000150612.1;transl_table=11 NC_008258.1 RefSeq gene 141468 142238 . + . ID=gene131;Name=SFV_RS00660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00660;old_locus_tag=SFV_0119 NC_008258.1 Protein Homology CDS 141468 142238 . + 0 ID=cds131;Parent=gene131;Dbxref=Genbank:WP_000972203.1;Name=WP_000972203.1;gbkey=CDS;product=inner membrane transport permease YadH;protein_id=WP_000972203.1;transl_table=11 NC_008258.1 RefSeq gene 142343 142783 . + . ID=gene132;Name=SFV_RS00665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00665 NC_008258.1 Protein Homology CDS 142343 142783 . + 0 ID=cds132;Parent=gene132;Dbxref=Genbank:WP_000901986.1;Name=WP_000901986.1;gbkey=CDS;product=PTS sugar transporter subunit IIA;protein_id=WP_000901986.1;transl_table=11 NC_008258.1 RefSeq gene 142847 144076 . + . ID=gene133;Name=SFV_RS00670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00670;old_locus_tag=SFV_0120 NC_008258.1 Protein Homology CDS 142847 144076 . + 0 ID=cds133;Parent=gene133;Dbxref=Genbank:WP_000277900.1;Name=WP_000277900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000277900.1;transl_table=11 NC_008258.1 RefSeq gene 144080 144460 . - . ID=gene134;Name=SFV_RS00675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00675;old_locus_tag=SFV_0121 NC_008258.1 Protein Homology CDS 144080 144460 . - 0 ID=cds134;Parent=gene134;Dbxref=Genbank:WP_000621515.1;Name=WP_000621515.1;gbkey=CDS;product=aspartate 1-decarboxylase;protein_id=WP_000621515.1;transl_table=11 NC_008258.1 RefSeq gene 144734 145636 . + . ID=gene135;Name=SFV_RS00680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00680;old_locus_tag=SFV_0122 NC_008258.1 Protein Homology CDS 144734 145636 . + 0 ID=cds135;Parent=gene135;Dbxref=Genbank:WP_000339937.1;Name=WP_000339937.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000339937.1;transl_table=11 NC_008258.1 RefSeq gene 145710 146561 . - . ID=gene136;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=SFV_RS00685;old_locus_tag=SFV_0123 NC_008258.1 Protein Homology CDS 145710 146561 . - 0 ID=cds136;Parent=gene136;Dbxref=Genbank:WP_000905404.1;Name=WP_000905404.1;Note=catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine;gbkey=CDS;gene=panC;product=pantothenate synthetase;protein_id=WP_000905404.1;transl_table=11 NC_008258.1 RefSeq gene 146573 147367 . - . ID=gene137;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=SFV_RS00690;old_locus_tag=SFV_0124 NC_008258.1 Protein Homology CDS 146573 147367 . - 0 ID=cds137;Parent=gene137;Dbxref=Genbank:WP_000805476.1;Name=WP_000805476.1;Note=catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5%2C10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate;gbkey=CDS;gene=panB;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=WP_000805476.1;transl_table=11 NC_008258.1 RefSeq gene 147480 147980 . - . ID=gene138;Name=SFV_RS00695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00695;old_locus_tag=SFV_0125 NC_008258.1 Protein Homology CDS 147480 147980 . - 0 ID=cds138;Parent=gene138;Dbxref=Genbank:WP_005053472.1;Name=WP_005053472.1;gbkey=CDS;product=pilus protein;protein_id=WP_005053472.1;transl_table=11 NC_008258.1 RefSeq repeat_region 147803 148577 . + . ID=id5;gbkey=repeat_region NC_008258.1 RefSeq region 147806 148573 . + . ID=id6;gbkey=mobile_element NC_008258.1 RefSeq gene 148055 148558 . + . ID=gene139;Name=SFV_RS00700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00700;old_locus_tag=SFV_0126 NC_008258.1 Protein Homology CDS 148055 148558 . + 0 ID=cds139;Parent=gene139;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 148706 149185 . - . ID=gene140;Name=SFV_RS00705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00705;old_locus_tag=SFV_0127 NC_008258.1 Protein Homology CDS 148706 149185 . - 0 ID=cds140;Parent=gene140;Dbxref=Genbank:WP_000215147.1;Name=WP_000215147.1;Note=catalyzes the formation of 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine and ATP;gbkey=CDS;product=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;protein_id=WP_000215147.1;transl_table=11 NC_008258.1 RefSeq gene 149182 150546 . - . ID=gene141;Name=pcnB;gbkey=Gene;gene=pcnB;gene_biotype=protein_coding;locus_tag=SFV_RS00710;old_locus_tag=SFV_0128 NC_008258.1 Protein Homology CDS 149182 150546 . - 0 ID=cds141;Parent=gene141;Dbxref=Genbank:WP_005104790.1;Name=WP_005104790.1;Note=Polymerase that creates the 3' poly(A) tail found in some mRNA's;gbkey=CDS;gene=pcnB;product=poly(A) polymerase I;protein_id=WP_005104790.1;transl_table=11 NC_008258.1 RefSeq gene 150639 151535 . - . ID=gene142;Name=SFV_RS00715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00715;old_locus_tag=SFV_0129 NC_008258.1 Protein Homology CDS 150639 151535 . - 0 ID=cds142;Parent=gene142;Dbxref=Genbank:WP_005100410.1;Name=WP_005100410.1;Note=this tRNA synthetase lacks the tRNA anticodon interaction domain%3B instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4%2C5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp%3B the modified tRNA does not bind elongation factor Tu;gbkey=CDS;product=glutamyl-Q tRNA(Asp) ligase;protein_id=WP_005100410.1;transl_table=11 NC_008258.1 RefSeq gene 151602 152057 . - . ID=gene143;Name=dksA;gbkey=Gene;gene=dksA;gene_biotype=protein_coding;locus_tag=SFV_RS00720;old_locus_tag=SFV_0130 NC_008258.1 Protein Homology CDS 151602 152057 . - 0 ID=cds143;Parent=gene143;Dbxref=Genbank:WP_001155227.1;Name=WP_001155227.1;gbkey=CDS;gene=dksA;product=RNA polymerase-binding transcription factor DksA;protein_id=WP_001155227.1;transl_table=11 NC_008258.1 RefSeq gene 152235 152939 . - . ID=gene144;Name=SFV_RS00725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00725;old_locus_tag=SFV_0131 NC_008258.1 Protein Homology CDS 152235 152939 . - 0 ID=cds144;Parent=gene144;Dbxref=Genbank:WP_000396043.1;Name=WP_000396043.1;gbkey=CDS;product=sugar fermentation stimulation protein A;protein_id=WP_000396043.1;transl_table=11 NC_008258.1 RefSeq gene 152954 153484 . - . ID=gene145;Name=SFV_RS00730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00730 NC_008258.1 Protein Homology CDS 152954 153484 . - 0 ID=cds145;Parent=gene145;Dbxref=Genbank:WP_001294698.1;Name=WP_001294698.1;Note=catalyzes the ligation and cleavage of of 2'-5' linkages in RNA;gbkey=CDS;product=2'-5' RNA ligase;protein_id=WP_001294698.1;transl_table=11 NC_008258.1 RefSeq gene 153513 155987 . + . ID=gene146;Name=SFV_RS00735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00735;old_locus_tag=SFV_0132 NC_008258.1 Protein Homology CDS 153513 155987 . + 0 ID=cds146;Parent=gene146;Dbxref=Genbank:WP_000938618.1;Name=WP_000938618.1;Note=similar in sequence to the ATP-dependent RNA helicase HrpA;gbkey=CDS;product=ATP-dependent RNA helicase HrpB;protein_id=WP_000938618.1;transl_table=11 NC_008258.1 RefSeq gene 155990 156196 . + . ID=gene147;Name=SFV_RS00740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00740 NC_008258.1 Protein Homology CDS 155990 156196 . + 0 ID=cds147;Parent=gene147;Dbxref=Genbank:WP_001347263.1;Name=WP_001347263.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001347263.1;transl_table=11 NC_008258.1 RefSeq gene 156183 158717 . + . ID=gene148;Name=mrcB;gbkey=Gene;gene=mrcB;gene_biotype=protein_coding;gene_synonym=ponB;locus_tag=SFV_RS00745;old_locus_tag=SFV_0134 NC_008258.1 Protein Homology CDS 156183 158717 . + 0 ID=cds148;Parent=gene148;Dbxref=Genbank:WP_000918166.1;Name=WP_000918166.1;Note=penicillin-binding protein 1b%3B contains transglycosylase and transpeptidase activity%3B major enzyme for peptidoglycan biosynthesis in Escherichia coli%3B transmembrane protein%3B forms dimers%3B three variants%2C one of which may be a degradation product%2C while the other appears to result from an alternative initiation site%2C are found within the cell;gbkey=CDS;gene=mrcB;product=penicillin-binding protein 1B;protein_id=WP_000918166.1;transl_table=11 NC_008258.1 RefSeq gene 158937 161180 . + . ID=gene149;Name=SFV_RS00750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00750;old_locus_tag=SFV_0135 NC_008258.1 Protein Homology CDS 158937 161180 . + 0 ID=cds149;Parent=gene149;Dbxref=Genbank:WP_000124415.1;Name=WP_000124415.1;Note=involved with the transport of ferrichrome across the outer membrane%3B binds the ferrichrome-iron ligand and interacts with the TonB protein;gbkey=CDS;product=ferrichrome outer membrane transporter;protein_id=WP_000124415.1;transl_table=11 NC_008258.1 RefSeq gene 161231 162028 . + . ID=gene150;Name=SFV_RS00755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00755;old_locus_tag=SFV_0136 NC_008258.1 Protein Homology CDS 161231 162028 . + 0 ID=cds150;Parent=gene150;Dbxref=Genbank:WP_001158930.1;Name=WP_001158930.1;Note=part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter;gbkey=CDS;product=iron-hydroxamate transporter ATP-binding protein;protein_id=WP_001158930.1;transl_table=11 NC_008258.1 RefSeq gene 162028 162918 . + . ID=gene151;Name=SFV_RS00760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00760;old_locus_tag=SFV_0137 NC_008258.1 Protein Homology CDS 162028 162918 . + 0 ID=cds151;Parent=gene151;Dbxref=Genbank:WP_000015992.1;Name=WP_000015992.1;Note=Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter%3B binds to all hydroxamate siderophores;gbkey=CDS;product=iron-hydroxamate transporter substrate-binding subunit;protein_id=WP_000015992.1;transl_table=11 NC_008258.1 RefSeq gene 162915 164897 . + . ID=gene152;Name=SFV_RS00765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00765;old_locus_tag=SFV_0138 NC_008258.1 Protein Homology CDS 162915 164897 . + 0 ID=cds152;Parent=gene152;Dbxref=Genbank:WP_000044073.1;Name=WP_000044073.1;gbkey=CDS;product=iron-hydroxamate transporter permease subunit;protein_id=WP_000044073.1;transl_table=11 NC_008258.1 RefSeq gene 164932 166212 . - . ID=gene153;Name=SFV_RS00770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00770;old_locus_tag=SFV_0139 NC_008258.1 Protein Homology CDS 164932 166212 . - 0 ID=cds153;Parent=gene153;Dbxref=Genbank:WP_000045281.1;Name=WP_000045281.1;Note=Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway;gbkey=CDS;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=WP_000045281.1;transl_table=11 NC_008258.1 RefSeq gene 166437 167858 . + . ID=gene154;Name=SFV_RS00775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00775;old_locus_tag=SFV_0140 NC_008258.1 Protein Homology CDS 166437 167858 . + 0 ID=cds154;Parent=gene154;Dbxref=Genbank:WP_000845386.1;Name=WP_000845386.1;Note=Acts as an electrical shunt for an outwardly-directed proton pump that is linked to amino acid decarboxylation;gbkey=CDS;product=H+/Cl- exchange transporter ClcA;protein_id=WP_000845386.1;transl_table=11 NC_008258.1 RefSeq gene 167940 168284 . + . ID=gene155;Name=SFV_RS00780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00780;old_locus_tag=SFV_0141 NC_008258.1 Protein Homology CDS 167940 168284 . + 0 ID=cds155;Parent=gene155;Dbxref=Genbank:WP_001295564.1;Name=WP_001295564.1;Note=essential respiratory protein A%3B may be involved in the transfer of iron-sulfur clusters%3B essential for growth using oxygen or alternate electron acceptors;gbkey=CDS;product=iron-sulfur cluster insertion protein ErpA;protein_id=WP_001295564.1;transl_table=11 NC_008258.1 RefSeq gene 168331 168954 . - . ID=gene156;Name=SFV_RS00785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00785;old_locus_tag=SFV_0142 NC_008258.1 Protein Homology CDS 168331 168954 . - 0 ID=cds156;Parent=gene156;Dbxref=Genbank:WP_000964238.1;Name=WP_000964238.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000964238.1;transl_table=11 NC_008258.1 RefSeq gene 168992 169792 . - . ID=gene157;Name=SFV_RS00790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00790;old_locus_tag=SFV_0143 NC_008258.1 Protein Homology CDS 168992 169792 . - 0 ID=cds157;Parent=gene157;Dbxref=Genbank:WP_005053399.1;Name=WP_005053399.1;Note=solute binding component of the vitamin B12 transport system BtuCDF;gbkey=CDS;product=vitamin B12-binding protein;protein_id=WP_005053399.1;transl_table=11 NC_008258.1 RefSeq gene 169785 170483 . - . ID=gene158;Name=SFV_RS00795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00795;old_locus_tag=SFV_0144 NC_008258.1 Protein Homology CDS 169785 170483 . - 0 ID=cds158;Parent=gene158;Dbxref=Genbank:WP_000689844.1;Name=WP_000689844.1;Note=enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine;gbkey=CDS;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=WP_000689844.1;transl_table=11 NC_008258.1 RefSeq gene 170567 172084 . + . ID=gene159;Name=dgt;gbkey=Gene;gene=dgt;gene_biotype=protein_coding;locus_tag=SFV_RS00800;old_locus_tag=SFV_0145 NC_008258.1 Protein Homology CDS 170567 172084 . + 0 ID=cds159;Parent=gene159;Dbxref=Genbank:WP_000057067.1;Name=WP_000057067.1;Note=forms a homotetramer%3B requires magnesium for activity%3B catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate;gbkey=CDS;gene=dgt;product=deoxyguanosinetriphosphate triphosphohydrolase;protein_id=WP_000057067.1;transl_table=11 NC_008258.1 RefSeq gene 172214 173638 . + . ID=gene160;Name=SFV_RS00805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00805;old_locus_tag=SFV_0146 NC_008258.1 Protein Homology CDS 172214 173638 . + 0 ID=cds160;Parent=gene160;Dbxref=Genbank:WP_000742443.1;Name=WP_000742443.1;Note=protease Do%3B required at high temperature%3B degrades damaged proteins;gbkey=CDS;product=serine endoprotease;protein_id=WP_000742443.1;transl_table=11 NC_008258.1 RefSeq gene 173793 174937 . + . ID=gene161;Name=SFV_RS00810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS00810;pseudo=true NC_008258.1 Protein Homology CDS 173793 174937 . + 0 ID=cds161;Parent=gene161;Note=regulates the expression of the operons for the enzymes involved in galactarate%2C glucarate and glycerate utilization;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 175026 175412 . - . ID=gene162;Name=SFV_RS00815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00815;old_locus_tag=SFV_0148 NC_008258.1 Protein Homology CDS 175026 175412 . - 0 ID=cds162;Parent=gene162;Dbxref=Genbank:WP_000272188.1;Name=WP_000272188.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000272188.1;transl_table=11 NC_008258.1 RefSeq gene 175726 176550 . - . ID=gene163;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=SFV_RS00820;old_locus_tag=SFV_0149 NC_008258.1 Protein Homology CDS 175726 176550 . - 0 ID=cds163;Parent=gene163;Dbxref=Genbank:WP_001186650.1;Name=WP_001186650.1;Note=catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway;gbkey=CDS;gene=dapD;product=2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase;protein_id=WP_001186650.1;transl_table=11 NC_008258.1 RefSeq gene 176581 179253 . - . ID=gene164;Name=SFV_RS00825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00825;old_locus_tag=SFV_0150 NC_008258.1 Protein Homology CDS 176581 179253 . - 0 ID=cds164;Parent=gene164;Dbxref=Genbank:WP_001094598.1;Name=WP_001094598.1;Note=catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein;gbkey=CDS;product=uridylyltransferase;protein_id=WP_001094598.1;transl_table=11 NC_008258.1 RefSeq gene 179315 180109 . - . ID=gene165;Name=SFV_RS00830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00830;old_locus_tag=SFV_0151 NC_008258.1 Protein Homology CDS 179315 180109 . - 0 ID=cds165;Parent=gene165;Dbxref=Genbank:WP_001018196.1;Name=WP_001018196.1;Note=catalyzes the removal of N-terminal amino acids from peptides and arylamides%3B generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn%2C Fe%2C or Mn;gbkey=CDS;product=methionine aminopeptidase;protein_id=WP_001018196.1;transl_table=11 NC_008258.1 RefSeq gene 180477 181202 . + . ID=gene166;Name=SFV_RS00835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00835;old_locus_tag=SFV_0152 NC_008258.1 Protein Homology CDS 180477 181202 . + 0 ID=cds166;Parent=gene166;Dbxref=Genbank:WP_000246888.1;Name=WP_000246888.1;gbkey=CDS;product=30S ribosomal protein S2;protein_id=WP_000246888.1;transl_table=11 NC_008258.1 RefSeq gene 181460 182311 . + . ID=gene167;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=SFV_RS00840;old_locus_tag=SFV_0153 NC_008258.1 Protein Homology CDS 181460 182311 . + 0 ID=cds167;Parent=gene167;Dbxref=Genbank:WP_000818114.1;Name=WP_000818114.1;Note=EF-Ts%3B functions during elongation stage of protein translation%3B forms a dimer%3B associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu;gbkey=CDS;gene=tsf;product=elongation factor Ts;protein_id=WP_000818114.1;transl_table=11 NC_008258.1 RefSeq gene 182458 183183 . + . ID=gene168;Name=SFV_RS00845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00845;old_locus_tag=SFV_0154 NC_008258.1 Protein Homology CDS 182458 183183 . + 0 ID=cds168;Parent=gene168;Dbxref=Genbank:WP_000224573.1;Name=WP_000224573.1;gbkey=CDS;product=uridylate kinase;protein_id=WP_000224573.1;transl_table=11 NC_008258.1 RefSeq gene 183475 184032 . + . ID=gene169;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=SFV_RS00850;old_locus_tag=SFV_0155 NC_008258.1 Protein Homology CDS 183475 184032 . + 0 ID=cds169;Parent=gene169;Dbxref=Genbank:WP_000622418.1;Name=WP_000622418.1;Note=Rrf%3B Frr%3B ribosome-recycling factor%3B release factor 4%3B RF4%3B recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G%3B A GTPase-dependent process results in release of 50S from 70S%3B inhibited by release factor RF-1%3B essential for viability%3B structurally similar to tRNAs;gbkey=CDS;gene=frr;product=ribosome-recycling factor;protein_id=WP_000622418.1;transl_table=11 NC_008258.1 RefSeq gene 184124 185320 . + . ID=gene170;Name=SFV_RS00855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00855;old_locus_tag=SFV_0156 NC_008258.1 Protein Homology CDS 184124 185320 . + 0 ID=cds170;Parent=gene170;Dbxref=Genbank:WP_000811943.1;Name=WP_000811943.1;Note=catalyzes the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=WP_000811943.1;transl_table=11 NC_008258.1 RefSeq gene 185509 186267 . + . ID=gene171;Name=SFV_RS00860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00860;old_locus_tag=SFV_0157 NC_008258.1 Protein Homology CDS 185509 186267 . + 0 ID=cds171;Parent=gene171;Dbxref=Genbank:WP_001295562.1;Name=WP_001295562.1;Note=catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate;gbkey=CDS;product=UDP pyrophosphate synthase;protein_id=WP_001295562.1;transl_table=11 NC_008258.1 RefSeq gene 186280 187137 . + . ID=gene172;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=SFV_RS00865;old_locus_tag=SFV_0158 NC_008258.1 Protein Homology CDS 186280 187137 . + 0 ID=cds172;Parent=gene172;Dbxref=Genbank:WP_000922446.1;Name=WP_000922446.1;Note=catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate;gbkey=CDS;gene=cdsA;product=phosphatidate cytidylyltransferase;protein_id=WP_000922446.1;transl_table=11 NC_008258.1 RefSeq gene 187149 188501 . + . ID=gene173;Name=SFV_RS00870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00870;old_locus_tag=SFV_0159 NC_008258.1 Protein Homology CDS 187149 188501 . + 0 ID=cds173;Parent=gene173;Dbxref=Genbank:WP_001295561.1;Name=WP_001295561.1;Note=catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response;gbkey=CDS;product=inner membrane zinc RIP metalloprotease%3B RpoE activator%2C by degrading RseA%3B cleaved signal peptide endoprotease;protein_id=WP_001295561.1;transl_table=11 NC_008258.1 RefSeq gene 188531 190963 . + . ID=gene174;Name=SFV_RS00875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00875;old_locus_tag=SFV_0160 NC_008258.1 Protein Homology CDS 188531 190963 . + 0 ID=cds174;Parent=gene174;Dbxref=Genbank:WP_001240896.1;Name=WP_001240896.1;Note=part of a complex with YfgL%2C YfiO%2C and NlpB involved in outer membrane protein biosynthesis%3B involved in the assembly of outer membrane proteins;gbkey=CDS;product=outer membrane protein assembly factor BamA;protein_id=WP_001240896.1;transl_table=11 NC_008258.1 RefSeq gene 191085 191570 . + . ID=gene175;Name=SFV_RS00880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00880;old_locus_tag=SFV_0161 NC_008258.1 Protein Homology CDS 191085 191570 . + 0 ID=cds175;Parent=gene175;Dbxref=Genbank:WP_000758956.1;Name=WP_000758956.1;gbkey=CDS;product=chaperone protein Skp;protein_id=WP_000758956.1;transl_table=11 NC_008258.1 RefSeq gene 191574 192599 . + . ID=gene176;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=SFV_RS00885;old_locus_tag=SFV_0162 NC_008258.1 Protein Homology CDS 191574 192599 . + 0 ID=cds176;Parent=gene176;Dbxref=Genbank:WP_001139282.1;Name=WP_001139282.1;Note=adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis;gbkey=CDS;gene=lpxD;product=UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase;protein_id=WP_001139282.1;transl_table=11 NC_008258.1 RefSeq gene 192704 193159 . + . ID=gene177;Name=SFV_RS00890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00890;old_locus_tag=SFV_0163 NC_008258.1 Protein Homology CDS 192704 193159 . + 0 ID=cds177;Parent=gene177;Dbxref=Genbank:WP_000210739.1;Name=WP_000210739.1;gbkey=CDS;product=3-hydroxyacyl-ACP dehydratase;protein_id=WP_000210739.1;transl_table=11 NC_008258.1 RefSeq gene 193163 193951 . + . ID=gene178;Name=SFV_RS00895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00895;old_locus_tag=SFV_0164 NC_008258.1 Protein Homology CDS 193163 193951 . + 0 ID=cds178;Parent=gene178;Dbxref=Genbank:WP_000565970.1;Name=WP_000565970.1;Note=catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis;gbkey=CDS;product=acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase;protein_id=WP_000565970.1;transl_table=11 NC_008258.1 RefSeq gene 193951 195099 . + . ID=gene179;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=SFV_RS00900;old_locus_tag=SFV_0165 NC_008258.1 Protein Homology CDS 193951 195099 . + 0 ID=cds179;Parent=gene179;Dbxref=Genbank:WP_000132064.1;Name=WP_000132064.1;Note=catalyzes the formation of lipid A disaccharide from UDP-2%2C3-diacylglucosamine and 2%2C3-diacylglucosamine-1-phosphate%2C lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM;gbkey=CDS;gene=lpxB;product=lipid-A-disaccharide synthase;protein_id=WP_000132064.1;transl_table=11 NC_008258.1 RefSeq gene 195096 195692 . + . ID=gene180;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=SFV_RS00905;old_locus_tag=SFV_0166 NC_008258.1 Protein Homology CDS 195096 195692 . + 0 ID=cds180;Parent=gene180;Dbxref=Genbank:WP_000569431.1;Name=WP_000569431.1;Note=RNH2%3B RNase HII%3B binds manganese%3B endonuclease which specifically degrades the RNA of RNA-DNA hybrids;gbkey=CDS;gene=rnhB;product=ribonuclease HII;protein_id=WP_000569431.1;transl_table=11 NC_008258.1 RefSeq gene 195729 199211 . + . ID=gene181;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=SFV_RS00910;old_locus_tag=SFV_0167 NC_008258.1 Protein Homology CDS 195729 199211 . + 0 ID=cds181;Parent=gene181;Dbxref=Genbank:WP_001294740.1;Name=WP_001294740.1;Note=catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time%3B main replicative polymerase;gbkey=CDS;gene=dnaE;product=DNA polymerase III subunit alpha;protein_id=WP_001294740.1;transl_table=11 NC_008258.1 RefSeq gene 199224 200183 . + . ID=gene182;Name=SFV_RS00915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00915;old_locus_tag=SFV_0168 NC_008258.1 Protein Homology CDS 199224 200183 . + 0 ID=cds182;Parent=gene182;Dbxref=Genbank:WP_000055741.1;Name=WP_000055741.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits%3B one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein;gbkey=CDS;product=acetyl-CoA carboxylase carboxyltransferase subunit alpha;protein_id=WP_000055741.1;transl_table=11 NC_008258.1 RefSeq gene 200282 202423 . + . ID=gene183;Name=SFV_RS00920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00920;old_locus_tag=SFV_0169 NC_008258.1 Protein Homology CDS 200282 202423 . + 0 ID=cds183;Parent=gene183;Dbxref=Genbank:WP_001021029.1;Name=WP_001021029.1;Note=constitutive%3B catalyzes the formation of cadaverine from lysine;gbkey=CDS;product=lysine decarboxylase CadA;protein_id=WP_001021029.1;transl_table=11 NC_008258.1 RefSeq gene 202480 202869 . + . ID=gene184;Name=SFV_RS00925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00925;old_locus_tag=SFV_0170 NC_008258.1 Protein Homology CDS 202480 202869 . + 0 ID=cds184;Parent=gene184;Dbxref=Genbank:WP_000901098.1;Name=WP_000901098.1;gbkey=CDS;product=lyase;protein_id=WP_000901098.1;transl_table=11 NC_008258.1 RefSeq gene 202934 204233 . + . ID=gene185;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=pseudogene;locus_tag=SFV_RS00930;pseudo=true NC_008258.1 Protein Homology CDS 202934 204233 . + 0 ID=cds185;Parent=gene185;Note=Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU%3B ATP-dependent%3B responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=tilS;product=tRNA(Ile)-lysidine ligase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 204282 204542 . - . ID=gene186;Name=SFV_RS00935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00935;old_locus_tag=SFV_0172 NC_008258.1 Protein Homology CDS 204282 204542 . - 0 ID=cds186;Parent=gene186;Dbxref=Genbank:WP_000062314.1;Name=WP_000062314.1;Note=Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination;gbkey=CDS;product=Rho-binding antiterminator;protein_id=WP_000062314.1;transl_table=11 NC_008258.1 RefSeq gene 204529 204729 . - . ID=gene187;Name=SFV_RS00940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00940;old_locus_tag=SFV_0173 NC_008258.1 Protein Homology CDS 204529 204729 . - 0 ID=cds187;Parent=gene187;Dbxref=Genbank:WP_000417058.1;Name=WP_000417058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000417058.1;transl_table=11 NC_008258.1 RefSeq gene 204895 205440 . + . ID=gene188;Name=SFV_RS00945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00945;old_locus_tag=SFV_0174 NC_008258.1 Protein Homology CDS 204895 205440 . + 0 ID=cds188;Parent=gene188;Dbxref=Genbank:WP_001185290.1;Name=WP_001185290.1;gbkey=CDS;product=PDDEXK superfamily protein;protein_id=WP_001185290.1;transl_table=11 NC_008258.1 RefSeq gene 205437 205859 . + . ID=gene189;Name=SFV_RS00950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00950;old_locus_tag=SFV_0175 NC_008258.1 Protein Homology CDS 205437 205859 . + 0 ID=cds189;Parent=gene189;Dbxref=Genbank:WP_000635538.1;Name=WP_000635538.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000635538.1;transl_table=11 NC_008258.1 RefSeq gene 205873 206583 . + . ID=gene190;Name=SFV_RS00955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00955;old_locus_tag=SFV_0176 NC_008258.1 Protein Homology CDS 205873 206583 . + 0 ID=cds190;Parent=gene190;Dbxref=Genbank:WP_000239155.1;Name=WP_000239155.1;gbkey=CDS;product=lipoprotein involved with copper homeostasis and adhesion;protein_id=WP_000239155.1;transl_table=11 NC_008258.1 RefSeq gene 206738 207562 . - . ID=gene191;Name=SFV_RS00960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00960;old_locus_tag=SFV_0177 NC_008258.1 Protein Homology CDS 206738 207562 . - 0 ID=cds191;Parent=gene191;Dbxref=Genbank:WP_005053355.1;Name=WP_005053355.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005053355.1;transl_table=11 NC_008258.1 RefSeq gene 207615 209333 . - . ID=gene192;Name=SFV_RS00965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00965;old_locus_tag=SFV_0178 NC_008258.1 Protein Homology CDS 207615 209333 . - 0 ID=cds192;Parent=gene192;Dbxref=Genbank:WP_001260712.1;Name=WP_001260712.1;Note=catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro);gbkey=CDS;product=proline--tRNA ligase;protein_id=WP_001260712.1;transl_table=11 NC_008258.1 RefSeq gene 209444 210151 . - . ID=gene193;Name=SFV_RS00970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00970;old_locus_tag=SFV_0179 NC_008258.1 Protein Homology CDS 209444 210151 . - 0 ID=cds193;Parent=gene193;Dbxref=Genbank:WP_000094030.1;Name=WP_000094030.1;gbkey=CDS;product=tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA;protein_id=WP_000094030.1;transl_table=11 NC_008258.1 RefSeq gene 210148 210552 . - . ID=gene194;Name=rcsF;gbkey=Gene;gene=rcsF;gene_biotype=protein_coding;locus_tag=SFV_RS00975;old_locus_tag=SFV_0180 NC_008258.1 Protein Homology CDS 210148 210552 . - 0 ID=cds194;Parent=gene194;Dbxref=Genbank:WP_001202325.1;Name=WP_001202325.1;gbkey=CDS;gene=rcsF;product=hypothetical protein;protein_id=WP_001202325.1;transl_table=11 NC_008258.1 RefSeq gene 210670 211485 . - . ID=gene195;Name=metQ;gbkey=Gene;gene=metQ;gene_biotype=protein_coding;locus_tag=SFV_RS00980;old_locus_tag=SFV_0181 NC_008258.1 Protein Homology CDS 210670 211485 . - 0 ID=cds195;Parent=gene195;Dbxref=Genbank:WP_000874224.1;Name=WP_000874224.1;gbkey=CDS;gene=metQ;product=D-methionine-binding lipoprotein MetQ;protein_id=WP_000874224.1;transl_table=11 NC_008258.1 RefSeq gene 211525 212178 . - . ID=gene196;Name=SFV_RS00985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00985;old_locus_tag=SFV_0182 NC_008258.1 Protein Homology CDS 211525 212178 . - 0 ID=cds196;Parent=gene196;Dbxref=Genbank:WP_001294596.1;Name=WP_001294596.1;Note=part of the MetNIQ methionine uptake system;gbkey=CDS;product=methionine ABC transporter permease;protein_id=WP_001294596.1;transl_table=11 NC_008258.1 RefSeq gene 212171 213202 . - . ID=gene197;Name=metN;gbkey=Gene;gene=metN;gene_biotype=protein_coding;locus_tag=SFV_RS00990;old_locus_tag=SFV_0183 NC_008258.1 Protein Homology CDS 212171 213202 . - 0 ID=cds197;Parent=gene197;Dbxref=Genbank:WP_000594013.1;Name=WP_000594013.1;Note=part of the metNIQ transport system for methionine;gbkey=CDS;gene=metN;product=methionine import ATP-binding protein MetN;protein_id=WP_000594013.1;transl_table=11 NC_008258.1 RefSeq gene 213390 213965 . + . ID=gene198;Name=SFV_RS00995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS00995;old_locus_tag=SFV_0184 NC_008258.1 Protein Homology CDS 213390 213965 . + 0 ID=cds198;Parent=gene198;Dbxref=Genbank:WP_001140187.1;Name=WP_001140187.1;Note=Converts the D-glycero-beta-D-manno-heptose 1%2C7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate;gbkey=CDS;product=D-glycero-beta-D-manno-heptose-1%2C7-bisphosphate 7-phosphatase;protein_id=WP_001140187.1;transl_table=11 NC_008258.1 RefSeq repeat_region 214022 219471 . + . ID=id7;gbkey=repeat_region NC_008258.1 RefSeq gene 214327 215882 . + . ID=gene199;Name=SFV_RS01000;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS01000;old_locus_tag=SFV_0185 NC_008258.1 RefSeq rRNA 214327 215882 . + . ID=rna0;Parent=gene199;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 214327 215882 . + . ID=id8;Parent=rna0;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq gene 215956 216031 . + . ID=gene200;Name=SFV_RS01005;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS01005;old_locus_tag=SFV_0186 NC_008258.1 tRNAscan-SE tRNA 215956 216031 . + . ID=rna1;Parent=gene200;anticodon=(pos:215990..215992);gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 215956 216031 . + . ID=id9;Parent=rna1;anticodon=(pos:215990..215992);gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 216216 219140 . + . ID=gene201;Name=SFV_RS01010;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS01010;old_locus_tag=SFV_0187 NC_008258.1 RefSeq rRNA 216216 219140 . + . ID=rna2;Parent=gene201;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 216216 219140 . + . ID=id10;Parent=rna2;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 219224 219339 . + . ID=gene202;Name=SFV_RS01015;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS01015;old_locus_tag=SFV_0188 NC_008258.1 cmsearch rRNA 219224 219339 . + . ID=rna3;Parent=gene202;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 219224 219339 . + . ID=id11;Parent=rna3;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 219394 219470 . + . ID=gene203;Name=SFV_RS01020;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS01020;old_locus_tag=SFV_0189 NC_008258.1 tRNAscan-SE tRNA 219394 219470 . + . ID=rna4;Parent=gene203;anticodon=(pos:219428..219430);gbkey=tRNA;product=tRNA-Asp NC_008258.1 tRNAscan-SE exon 219394 219470 . + . ID=id12;Parent=rna4;anticodon=(pos:219428..219430);gbkey=tRNA;product=tRNA-Asp NC_008258.1 RefSeq gene 219633 220436 . + . ID=gene204;Name=dkgB;gbkey=Gene;gene=dkgB;gene_biotype=protein_coding;locus_tag=SFV_RS01025;old_locus_tag=SFV_0190 NC_008258.1 Protein Homology CDS 219633 220436 . + 0 ID=cds199;Parent=gene204;Dbxref=Genbank:WP_000997035.1;Name=WP_000997035.1;Note=catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid;gbkey=CDS;gene=dkgB;product=2%2C5-diketo-D-gluconate reductase B;protein_id=WP_000997035.1;transl_table=11 NC_008258.1 RefSeq repeat_region 220457 221894 . + . ID=id13;gbkey=repeat_region NC_008258.1 RefSeq region 220461 221888 . - . ID=id14;gbkey=mobile_element NC_008258.1 RefSeq gene 220475 221803 . - . ID=gene205;Name=SFV_RS01030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01030;old_locus_tag=SFV_0191 NC_008258.1 Protein Homology CDS 220475 221803 . - 0 ID=cds200;Parent=gene205;Dbxref=Genbank:WP_000547279.1;Name=WP_000547279.1;gbkey=CDS;product=transposase;protein_id=WP_000547279.1;transl_table=11 NC_008258.1 RefSeq gene 221871 222785 . - . ID=gene206;Name=SFV_RS01035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01035;old_locus_tag=SFV_0192 NC_008258.1 Protein Homology CDS 221871 222785 . - 0 ID=cds201;Parent=gene206;Dbxref=Genbank:WP_000648578.1;Name=WP_000648578.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000648578.1;transl_table=11 NC_008258.1 RefSeq gene 223026 223826 . + . ID=gene207;Name=SFV_RS01040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01040;old_locus_tag=SFV_0193 NC_008258.1 Protein Homology CDS 223026 223826 . + 0 ID=cds202;Parent=gene207;Dbxref=Genbank:WP_001230983.1;Name=WP_001230983.1;gbkey=CDS;product=endo/exonuclease/phosphatase;protein_id=WP_001230983.1;transl_table=11 NC_008258.1 RefSeq gene 223904 224674 . + . ID=gene208;Name=SFV_RS01045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01045;old_locus_tag=SFV_0194 NC_008258.1 Protein Homology CDS 223904 224674 . + 0 ID=cds203;Parent=gene208;Dbxref=Genbank:WP_000211684.1;Name=WP_000211684.1;gbkey=CDS;product=S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB;protein_id=WP_000211684.1;transl_table=11 NC_008258.1 RefSeq gene 224722 226080 . - . ID=gene209;Name=mltD;gbkey=Gene;gene=mltD;gene_biotype=protein_coding;gene_synonym=dniR,yafG;locus_tag=SFV_RS01050;old_locus_tag=SFV_0195 NC_008258.1 Protein Homology CDS 224722 226080 . - 0 ID=cds204;Parent=gene209;Dbxref=Genbank:WP_000644677.1;Name=WP_000644677.1;Note=catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues%3B may play a role in recycling muropeptides during cell division and/or cell elongation%3B in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall;gbkey=CDS;gene=mltD;product=membrane protein;protein_id=WP_000644677.1;transl_table=11 NC_008258.1 RefSeq gene 226152 226907 . - . ID=gene210;Name=SFV_RS01055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01055;old_locus_tag=SFV_0196 NC_008258.1 Protein Homology CDS 226152 226907 . - 0 ID=cds205;Parent=gene210;Dbxref=Genbank:WP_001052754.1;Name=WP_001052754.1;Note=catalyzes the hydrolysis of S-D-lactoylglutathione to D-lactic acid and reduced glutathione%3B plays an important role in cellular detoxification using glutathione;gbkey=CDS;product=hydroxyacylglutathione hydrolase;protein_id=WP_001052754.1;transl_table=11 NC_008258.1 RefSeq gene 226941 227663 . + . ID=gene211;Name=SFV_RS01060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01060;old_locus_tag=SFV_0197 NC_008258.1 Protein Homology CDS 226941 227663 . + 0 ID=cds206;Parent=gene211;Dbxref=Genbank:WP_005060310.1;Name=WP_005060310.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005060310.1;transl_table=11 NC_008258.1 RefSeq gene 227660 228127 . - . ID=gene212;Name=SFV_RS01065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01065;old_locus_tag=SFV_0199 NC_008258.1 Protein Homology CDS 227660 228127 . - 0 ID=cds207;Parent=gene212;Dbxref=Genbank:WP_000917889.1;Name=WP_000917889.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000917889.1;transl_table=11 NC_008258.1 RefSeq gene 228183 228923 . + . ID=gene213;Name=SFV_RS01070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01070;old_locus_tag=SFV_0198 NC_008258.1 Protein Homology CDS 228183 228923 . + 0 ID=cds208;Parent=gene213;Dbxref=Genbank:WP_000126276.1;Name=WP_000126276.1;Note=3'-5' exonuclease of DNA polymerase III;gbkey=CDS;product=DNA polymerase III subunit epsilon;protein_id=WP_000126276.1;transl_table=11 NC_008258.1 RefSeq gene 229056 229132 . + . ID=gene214;Name=SFV_RS01075;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS01075;old_locus_tag=SFV_0200 NC_008258.1 tRNAscan-SE tRNA 229056 229132 . + . ID=rna5;Parent=gene214;anticodon=(pos:229090..229092);gbkey=tRNA;product=tRNA-Asp NC_008258.1 tRNAscan-SE exon 229056 229132 . + . ID=id15;Parent=rna5;anticodon=(pos:229090..229092);gbkey=tRNA;product=tRNA-Asp NC_008258.1 RefSeq gene 229263 230309 . - . ID=gene215;Name=SFV_RS01080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01080;old_locus_tag=SFV_0201 NC_008258.1 Protein Homology CDS 229263 230309 . - 0 ID=cds209;Parent=gene215;Dbxref=Genbank:WP_000402247.1;Name=WP_000402247.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000402247.1;transl_table=11 NC_008258.1 RefSeq gene 230320 230832 . - . ID=gene216;Name=SFV_RS01085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01085;old_locus_tag=SFV_0202 NC_008258.1 Protein Homology CDS 230320 230832 . - 0 ID=cds210;Parent=gene216;Dbxref=Genbank:WP_005060287.1;Name=WP_005060287.1;gbkey=CDS;product=sciB protein;protein_id=WP_005060287.1;transl_table=11 NC_008258.1 RefSeq gene 230964 231304 . - . ID=gene217;Name=SFV_RS01090;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01090;old_locus_tag=SFV_0203;pseudo=true NC_008258.1 Protein Homology CDS 230964 231304 . - 0 ID=cds211;Parent=gene217;exception=annotated by transcript or proteomic data;gbkey=CDS;product=fimbrial protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 231301 232918 . - . ID=gene218;Name=SFV_RS01095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01095;pseudo=true NC_008258.1 Protein Homology CDS 231301 232918 . - 0 ID=cds212;Parent=gene218;exception=annotated by transcript or proteomic data;gbkey=CDS;product=type VI secretion protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 233200 233694 . - . ID=gene219;Name=SFV_RS01100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01100;old_locus_tag=SFV_0205 NC_008258.1 Protein Homology CDS 233200 233694 . - 0 ID=cds213;Parent=gene219;Dbxref=Genbank:WP_001276640.1;Name=WP_001276640.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001276640.1;transl_table=11 NC_008258.1 RefSeq gene 233889 234521 . - . ID=gene220;Name=SFV_RS01105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01105;old_locus_tag=SFV_0206 NC_008258.1 Protein Homology CDS 233889 234521 . - 0 ID=cds214;Parent=gene220;Dbxref=Genbank:WP_000183806.1;Name=WP_000183806.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000183806.1;transl_table=11 NC_008258.1 RefSeq gene 234508 235422 . - . ID=gene221;Name=SFV_RS01110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01110;pseudo=true NC_008258.1 Protein Homology CDS 234508 235422 . - 0 ID=cds215;Parent=gene221;gbkey=CDS;product=cytoplasmic protein;pseudo=true;transl_except=(pos:complement(235123..235125)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 235428 236761 . + . ID=id16;gbkey=repeat_region NC_008258.1 RefSeq region 235429 236759 . + . ID=id17;gbkey=mobile_element NC_008258.1 RefSeq gene 235520 235885 . + . ID=gene222;Name=SFV_RS01115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01115;old_locus_tag=SFV_0208 NC_008258.1 Protein Homology CDS 235520 235885 . + 0 ID=cds216;Parent=gene222;Dbxref=Genbank:WP_000567796.1;Name=WP_000567796.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567796.1;transl_table=11 NC_008258.1 RefSeq gene 235843 236748 . + . ID=gene223;Name=SFV_RS01120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01120;old_locus_tag=SFV_0209 NC_008258.1 Protein Homology CDS 235843 236748 . + 0 ID=cds217;Parent=gene223;Dbxref=Genbank:WP_024260221.1;Name=WP_024260221.1;gbkey=CDS;product=transposase;protein_id=WP_024260221.1;transl_table=11 NC_008258.1 RefSeq gene 236805 237092 . - . ID=gene224;Name=SFV_RS01125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01125 NC_008258.1 Protein Homology CDS 236805 237092 . - 0 ID=cds218;Parent=gene224;Dbxref=Genbank:WP_000343116.1;Name=WP_000343116.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000343116.1;transl_table=11 NC_008258.1 RefSeq gene 237174 237323 . - . ID=gene225;Name=SFV_RS01130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01130;partial=true;pseudo=true;start_range=.,237174 NC_008258.1 Protein Homology CDS 237174 237323 . - 0 ID=cds219;Parent=gene225;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,237174;transl_table=11 NC_008258.1 RefSeq gene 237311 237778 . - . ID=gene226;Name=SFV_RS01135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01135;old_locus_tag=SFV_0211 NC_008258.1 Protein Homology CDS 237311 237778 . - 0 ID=cds220;Parent=gene226;Dbxref=Genbank:WP_011587187.1;Name=WP_011587187.1;gbkey=CDS;product=endopeptidase;protein_id=WP_011587187.1;transl_table=11 NC_008258.1 RefSeq repeat_region 237339 239536 . + . ID=id18;gbkey=repeat_region NC_008258.1 RefSeq gene 237775 238308 . - . ID=gene227;Name=SFV_RS01140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01140;old_locus_tag=SFV_0212 NC_008258.1 Protein Homology CDS 237775 238308 . - 0 ID=cds221;Parent=gene227;Dbxref=Genbank:WP_001274721.1;Name=WP_001274721.1;gbkey=CDS;product=lysozyme;protein_id=WP_001274721.1;transl_table=11 NC_008258.1 RefSeq gene 238374 238934 . - . ID=gene228;Name=SFV_RS01145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01145;old_locus_tag=SFV_0213 NC_008258.1 Protein Homology CDS 238374 238934 . - 0 ID=cds222;Parent=gene228;Dbxref=Genbank:WP_005105718.1;Name=WP_005105718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105718.1;transl_table=11 NC_008258.1 RefSeq gene 239008 239223 . - . ID=gene229;Name=SFV_RS01150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01150;old_locus_tag=SFV_0214 NC_008258.1 Protein Homology CDS 239008 239223 . - 0 ID=cds223;Parent=gene229;Dbxref=Genbank:WP_000839566.1;Name=WP_000839566.1;gbkey=CDS;product=holin;protein_id=WP_000839566.1;transl_table=11 NC_008258.1 RefSeq gene 239978 241117 . - . ID=gene230;Name=SFV_RS01155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01155;old_locus_tag=SFV_0215 NC_008258.1 Protein Homology CDS 239978 241117 . - 0 ID=cds224;Parent=gene230;Dbxref=Genbank:WP_000028982.1;Name=WP_000028982.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000028982.1;transl_table=11 NC_008258.1 RefSeq gene 241219 241629 . - . ID=gene231;Name=SFV_RS01160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01160;old_locus_tag=SFV_0216 NC_008258.1 Protein Homology CDS 241219 241629 . - 0 ID=cds225;Parent=gene231;Dbxref=Genbank:WP_000028498.1;Name=WP_000028498.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000028498.1;transl_table=11 NC_008258.1 RefSeq gene 241757 241951 . - . ID=gene232;Name=SFV_RS01165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01165 NC_008258.1 Protein Homology CDS 241757 241951 . - 0 ID=cds226;Parent=gene232;Dbxref=Genbank:WP_000184027.1;Name=WP_000184027.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000184027.1;transl_table=11 NC_008258.1 RefSeq gene 241955 242287 . - . ID=gene233;Name=SFV_RS01170;end_range=242287,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01170;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 241955 242287 . - 0 ID=cds227;Parent=gene233;end_range=242287,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=Rha family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 242289 243540 . + . ID=id19;gbkey=repeat_region NC_008258.1 RefSeq region 242290 243539 . + . ID=id20;gbkey=mobile_element NC_008258.1 RefSeq gene 242362 242664 . + . ID=gene234;Name=SFV_RS01175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01175;old_locus_tag=SFV_0217 NC_008258.1 Protein Homology CDS 242362 242664 . + 0 ID=cds228;Parent=gene234;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 242691 242927 . + . ID=gene235;Name=SFV_RS24440;end_range=242927,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24440;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 242691 242927 . + 0 ID=cds229;Parent=gene235;end_range=242927,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 242853 243531 . + . ID=gene236;Name=SFV_RS01180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01180;pseudo=true NC_008258.1 Protein Homology CDS 242853 243531 . + 0 ID=cds230;Parent=gene236;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 243525 244589 . + . ID=gene237;Name=SFV_RS01185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01185;old_locus_tag=SFV_0219 NC_008258.1 Protein Homology CDS 243525 244589 . + 0 ID=cds231;Parent=gene237;Dbxref=Genbank:WP_005104848.1;Name=WP_005104848.1;gbkey=CDS;product=terminase;protein_id=WP_005104848.1;transl_table=11 NC_008258.1 RefSeq gene 244590 246755 . + . ID=gene238;Name=SFV_RS01190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01190;old_locus_tag=SFV_0220 NC_008258.1 Protein Homology CDS 244590 246755 . + 0 ID=cds232;Parent=gene238;Dbxref=Genbank:WP_000752837.1;Name=WP_000752837.1;gbkey=CDS;product=portal protein;protein_id=WP_000752837.1;transl_table=11 NC_008258.1 RefSeq gene 246769 247680 . + . ID=gene239;Name=SFV_RS01195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01195;old_locus_tag=SFV_0221 NC_008258.1 Protein Homology CDS 246769 247680 . + 0 ID=cds233;Parent=gene239;Dbxref=Genbank:WP_000373010.1;Name=WP_000373010.1;gbkey=CDS;product=scaffold protein;protein_id=WP_000373010.1;transl_table=11 NC_008258.1 RefSeq gene 247680 248975 . + . ID=gene240;Name=SFV_RS01200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01200;old_locus_tag=SFV_0222 NC_008258.1 Protein Homology CDS 247680 248975 . + 0 ID=cds234;Parent=gene240;Dbxref=Genbank:WP_001196943.1;Name=WP_001196943.1;gbkey=CDS;product=coat protein;protein_id=WP_001196943.1;transl_table=11 NC_008258.1 RefSeq gene 249020 249244 . + . ID=gene241;Name=SFV_RS01205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01205;old_locus_tag=SFV_0223 NC_008258.1 Protein Homology CDS 249020 249244 . + 0 ID=cds235;Parent=gene241;Dbxref=Genbank:WP_001595516.1;Name=WP_001595516.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001595516.1;transl_table=11 NC_008258.1 RefSeq gene 249222 249722 . + . ID=gene242;Name=SFV_RS01210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01210;old_locus_tag=SFV_0224 NC_008258.1 Protein Homology CDS 249222 249722 . + 0 ID=cds236;Parent=gene242;Dbxref=Genbank:WP_001054834.1;Name=WP_001054834.1;gbkey=CDS;product=DNA recombination protein RmuC;protein_id=WP_001054834.1;transl_table=11 NC_008258.1 RefSeq gene 249723 251141 . + . ID=gene243;Name=SFV_RS01215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01215;old_locus_tag=SFV_0225 NC_008258.1 Protein Homology CDS 249723 251141 . + 0 ID=cds237;Parent=gene243;Dbxref=Genbank:WP_001122375.1;Name=WP_001122375.1;gbkey=CDS;product=Packaged DNA stabilization protein gp10;protein_id=WP_001122375.1;transl_table=11 NC_008258.1 RefSeq gene 251141 251989 . + . ID=gene244;Name=SFV_RS01220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01220;old_locus_tag=SFV_0226 NC_008258.1 Protein Homology CDS 251141 251989 . + 0 ID=cds238;Parent=gene244;Dbxref=Genbank:WP_000785548.1;Name=WP_000785548.1;gbkey=CDS;product=Packaged DNA stabilization protein gp26;protein_id=WP_000785548.1;transl_table=11 NC_008258.1 RefSeq gene 251989 252444 . + . ID=gene245;Name=SFV_RS01225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01225;old_locus_tag=SFV_0227 NC_008258.1 Protein Homology CDS 251989 252444 . + 0 ID=cds239;Parent=gene245;Dbxref=Genbank:WP_000614030.1;Name=WP_000614030.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000614030.1;transl_table=11 NC_008258.1 RefSeq gene 252447 253139 . + . ID=gene246;Name=SFV_RS01230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01230;old_locus_tag=SFV_0228 NC_008258.1 Protein Homology CDS 252447 253139 . + 0 ID=cds240;Parent=gene246;Dbxref=Genbank:WP_000964882.1;Name=WP_000964882.1;gbkey=CDS;product=DNA transfer protein;protein_id=WP_000964882.1;transl_table=11 NC_008258.1 RefSeq gene 253149 254480 . + . ID=gene247;Name=SFV_RS01235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01235;old_locus_tag=SFV_0229 NC_008258.1 Protein Homology CDS 253149 254480 . + 0 ID=cds241;Parent=gene247;Dbxref=Genbank:WP_000246915.1;Name=WP_000246915.1;gbkey=CDS;product=DNA injection protein;protein_id=WP_000246915.1;transl_table=11 NC_008258.1 RefSeq gene 254481 256211 . + . ID=gene248;Name=SFV_RS01240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01240;old_locus_tag=SFV_0230 NC_008258.1 Protein Homology CDS 254481 256211 . + 0 ID=cds242;Parent=gene248;Dbxref=Genbank:WP_005104857.1;Name=WP_005104857.1;gbkey=CDS;product=lytic transglycosylase;protein_id=WP_005104857.1;transl_table=11 NC_008258.1 RefSeq repeat_region 256281 257593 . + . ID=id21;gbkey=repeat_region NC_008258.1 RefSeq region 256283 257592 . + . ID=id22;gbkey=mobile_element NC_008258.1 RefSeq gene 256337 256663 . + . ID=gene249;Name=SFV_RS01245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01245;old_locus_tag=SFV_0231 NC_008258.1 Protein Homology CDS 256337 256663 . + 0 ID=cds243;Parent=gene249;Dbxref=Genbank:WP_000165227.1;Name=WP_000165227.1;gbkey=CDS;product=transposase;protein_id=WP_000165227.1;transl_table=11 NC_008258.1 RefSeq gene 256663 257550 . + . ID=gene250;Name=SFV_RS01250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01250;old_locus_tag=SFV_0232 NC_008258.1 Protein Homology CDS 256663 257550 . + 0 ID=cds244;Parent=gene250;Dbxref=Genbank:WP_011310395.1;Name=WP_011310395.1;gbkey=CDS;product=transposase;protein_id=WP_011310395.1;transl_table=11 NC_008258.1 RefSeq repeat_region 257599 258440 . + . ID=id23;gbkey=repeat_region NC_008258.1 RefSeq region 257599 258435 . - . ID=id24;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 257599 257928 . - . ID=gene251;Name=SFV_RS01255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01255;partial=true;pseudo=true;start_range=.,257599 NC_008258.1 Protein Homology CDS 257599 257928 . - 0 ID=cds245;Parent=gene251;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,257599;transl_table=11 NC_008258.1 RefSeq gene 258069 258371 . - . ID=gene252;Name=SFV_RS01260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01260;old_locus_tag=SFV_0234 NC_008258.1 Protein Homology CDS 258069 258371 . - 0 ID=cds246;Parent=gene252;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 258523 258855 . + . ID=gene253;Name=SFV_RS01265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01265;old_locus_tag=SFV_0235 NC_008258.1 Protein Homology CDS 258523 258855 . + 0 ID=cds247;Parent=gene253;Dbxref=Genbank:WP_000017638.1;Name=WP_000017638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000017638.1;transl_table=11 NC_008258.1 RefSeq gene 258867 259049 . + . ID=gene254;Name=SFV_RS01270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01270;old_locus_tag=SFV_0236 NC_008258.1 Protein Homology CDS 258867 259049 . + 0 ID=cds248;Parent=gene254;Dbxref=Genbank:WP_000605608.1;Name=WP_000605608.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000605608.1;transl_table=11 NC_008258.1 RefSeq gene 259049 260290 . + . ID=gene255;Name=SFV_RS01275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01275;old_locus_tag=SFV_0237 NC_008258.1 Protein Homology CDS 259049 260290 . + 0 ID=cds249;Parent=gene255;Dbxref=Genbank:WP_000466262.1;Name=WP_000466262.1;gbkey=CDS;product=portal protein;protein_id=WP_000466262.1;transl_table=11 NC_008258.1 RefSeq gene 260268 260918 . + . ID=gene256;Name=SFV_RS01280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01280;old_locus_tag=SFV_0238 NC_008258.1 Protein Homology CDS 260268 260918 . + 0 ID=cds250;Parent=gene256;Dbxref=Genbank:WP_005104861.1;Name=WP_005104861.1;gbkey=CDS;product=primosome assembly protein PriA;protein_id=WP_005104861.1;transl_table=11 NC_008258.1 RefSeq gene 260933 262138 . + . ID=gene257;Name=SFV_RS01285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01285;old_locus_tag=SFV_0239 NC_008258.1 Protein Homology CDS 260933 262138 . + 0 ID=cds251;Parent=gene257;Dbxref=Genbank:WP_000257491.1;Name=WP_000257491.1;gbkey=CDS;product=phage capsid protein;protein_id=WP_000257491.1;transl_table=11 NC_008258.1 RefSeq gene 262188 262388 . + . ID=gene258;Name=SFV_RS01290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01290;old_locus_tag=SFV_0240 NC_008258.1 Protein Homology CDS 262188 262388 . + 0 ID=cds252;Parent=gene258;Dbxref=Genbank:WP_000601360.1;Name=WP_000601360.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000601360.1;transl_table=11 NC_008258.1 RefSeq gene 262391 262714 . + . ID=gene259;Name=SFV_RS01295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01295;old_locus_tag=SFV_0241 NC_008258.1 Protein Homology CDS 262391 262714 . + 0 ID=cds253;Parent=gene259;Dbxref=Genbank:WP_000927722.1;Name=WP_000927722.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000927722.1;transl_table=11 NC_008258.1 RefSeq gene 262711 263121 . + . ID=gene260;Name=SFV_RS01300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01300;old_locus_tag=SFV_0242 NC_008258.1 Protein Homology CDS 262711 263121 . + 0 ID=cds254;Parent=gene260;Dbxref=Genbank:WP_000702404.1;Name=WP_000702404.1;gbkey=CDS;product=phage head-tail adapter protein;protein_id=WP_000702404.1;transl_table=11 NC_008258.1 RefSeq gene 263096 263602 . + . ID=gene261;Name=SFV_RS01305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01305;old_locus_tag=SFV_0243 NC_008258.1 Protein Homology CDS 263096 263602 . + 0 ID=cds255;Parent=gene261;Dbxref=Genbank:WP_000235781.1;Name=WP_000235781.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000235781.1;transl_table=11 NC_008258.1 RefSeq gene 263599 264159 . + . ID=gene262;Name=SFV_RS01310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01310;old_locus_tag=SFV_0244 NC_008258.1 Protein Homology CDS 263599 264159 . + 0 ID=cds256;Parent=gene262;Dbxref=Genbank:WP_000779279.1;Name=WP_000779279.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000779279.1;transl_table=11 NC_008258.1 RefSeq gene 264168 264338 . + . ID=gene263;Name=SFV_RS01315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01315 NC_008258.1 Protein Homology CDS 264168 264338 . + 0 ID=cds257;Parent=gene263;Dbxref=Genbank:WP_000497751.1;Name=WP_000497751.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000497751.1;transl_table=11 NC_008258.1 RefSeq gene 264322 265818 . + . ID=gene264;Name=SFV_RS01320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01320;old_locus_tag=SFV_0245 NC_008258.1 Protein Homology CDS 264322 265818 . + 0 ID=cds258;Parent=gene264;Dbxref=Genbank:WP_000155706.1;Name=WP_000155706.1;gbkey=CDS;product=tail sheath protein;protein_id=WP_000155706.1;transl_table=11 NC_008258.1 RefSeq gene 265818 266174 . + . ID=gene265;Name=SFV_RS01325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01325;old_locus_tag=SFV_0246 NC_008258.1 Protein Homology CDS 265818 266174 . + 0 ID=cds259;Parent=gene265;Dbxref=Genbank:WP_000090997.1;Name=WP_000090997.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000090997.1;transl_table=11 NC_008258.1 RefSeq gene 266174 266443 . + . ID=gene266;Name=SFV_RS01330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01330;old_locus_tag=SFV_0247 NC_008258.1 Protein Homology CDS 266174 266443 . + 0 ID=cds260;Parent=gene266;Dbxref=Genbank:WP_000661054.1;Name=WP_000661054.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000661054.1;transl_table=11 NC_008258.1 RefSeq gene 266585 268420 . + . ID=gene267;Name=SFV_RS01335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01335;old_locus_tag=SFV_0248 NC_008258.1 Protein Homology CDS 266585 268420 . + 0 ID=cds261;Parent=gene267;Dbxref=Genbank:WP_000807221.1;Name=WP_000807221.1;gbkey=CDS;product=phage tail tape measure protein;protein_id=WP_000807221.1;transl_table=11 NC_008258.1 RefSeq gene 268481 269809 . + . ID=gene268;Name=SFV_RS01340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01340;old_locus_tag=SFV_0249 NC_008258.1 Protein Homology CDS 268481 269809 . + 0 ID=cds262;Parent=gene268;Dbxref=Genbank:WP_005104873.1;Name=WP_005104873.1;gbkey=CDS;product=DNA circularization protein;protein_id=WP_005104873.1;transl_table=11 NC_008258.1 RefSeq gene 269806 270885 . + . ID=gene269;Name=SFV_RS01345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01345;old_locus_tag=SFV_0250 NC_008258.1 Protein Homology CDS 269806 270885 . + 0 ID=cds263;Parent=gene269;Dbxref=Genbank:WP_000999531.1;Name=WP_000999531.1;gbkey=CDS;product=baseplate protein;protein_id=WP_000999531.1;transl_table=11 NC_008258.1 RefSeq gene 270885 271433 . + . ID=gene270;Name=SFV_RS01350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01350;old_locus_tag=SFV_0251 NC_008258.1 Protein Homology CDS 270885 271433 . + 0 ID=cds264;Parent=gene270;Dbxref=Genbank:WP_001259069.1;Name=WP_001259069.1;gbkey=CDS;product=baseplate assembly protein;protein_id=WP_001259069.1;transl_table=11 NC_008258.1 RefSeq gene 271433 271858 . + . ID=gene271;Name=SFV_RS01355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01355;old_locus_tag=SFV_0252 NC_008258.1 Protein Homology CDS 271433 271858 . + 0 ID=cds265;Parent=gene271;Dbxref=Genbank:WP_000424747.1;Name=WP_000424747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000424747.1;transl_table=11 NC_008258.1 RefSeq gene 271845 272903 . + . ID=gene272;Name=SFV_RS01360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01360;old_locus_tag=SFV_0253 NC_008258.1 Protein Homology CDS 271845 272903 . + 0 ID=cds266;Parent=gene272;Dbxref=Genbank:WP_000785321.1;Name=WP_000785321.1;gbkey=CDS;product=phage baseplate protein;protein_id=WP_000785321.1;transl_table=11 NC_008258.1 RefSeq gene 272894 273478 . + . ID=gene273;Name=SFV_RS01365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01365;old_locus_tag=SFV_0254 NC_008258.1 Protein Homology CDS 272894 273478 . + 0 ID=cds267;Parent=gene273;Dbxref=Genbank:WP_000383571.1;Name=WP_000383571.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000383571.1;transl_table=11 NC_008258.1 RefSeq gene 273482 274132 . + . ID=gene274;Name=SFV_RS01370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01370 NC_008258.1 Protein Homology CDS 273482 274132 . + 0 ID=cds268;Parent=gene274;Dbxref=Genbank:WP_024260222.1;Name=WP_024260222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260222.1;transl_table=11 NC_008258.1 RefSeq gene 274089 274544 . + . ID=gene275;Name=SFV_RS01375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01375;old_locus_tag=SFV_0255 NC_008258.1 Protein Homology CDS 274089 274544 . + 0 ID=cds269;Parent=gene275;Dbxref=Genbank:WP_049760306.1;Name=WP_049760306.1;gbkey=CDS;product=phage tail protein;protein_id=WP_049760306.1;transl_table=11 NC_008258.1 RefSeq gene 274667 275920 . - . ID=gene276;Name=SFV_RS01380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01380;old_locus_tag=SFV_0256 NC_008258.1 Protein Homology CDS 274667 275920 . - 0 ID=cds270;Parent=gene276;Dbxref=Genbank:WP_000838659.1;Name=WP_000838659.1;gbkey=CDS;product=glucosyl transferase;protein_id=WP_000838659.1;transl_table=11 NC_008258.1 RefSeq gene 275917 276840 . - . ID=gene277;Name=SFV_RS01385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01385;old_locus_tag=SFV_0257 NC_008258.1 Protein Homology CDS 275917 276840 . - 0 ID=cds271;Parent=gene277;Dbxref=Genbank:WP_000703656.1;Name=WP_000703656.1;gbkey=CDS;product=bactoprenol glucosyl transferase;protein_id=WP_000703656.1;transl_table=11 NC_008258.1 RefSeq gene 276837 277199 . - . ID=gene278;Name=SFV_RS01390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01390;old_locus_tag=SFV_0258 NC_008258.1 Protein Homology CDS 276837 277199 . - 0 ID=cds272;Parent=gene278;Dbxref=Genbank:WP_000915848.1;Name=WP_000915848.1;gbkey=CDS;product=translocase;protein_id=WP_000915848.1;transl_table=11 NC_008258.1 RefSeq repeat_region 277401 277814 . + . ID=id25;gbkey=repeat_region NC_008258.1 RefSeq gene 277461 278621 . - . ID=gene279;Name=SFV_RS01395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01395;old_locus_tag=SFV_0259 NC_008258.1 Protein Homology CDS 277461 278621 . - 0 ID=cds273;Parent=gene279;Dbxref=Genbank:WP_004014228.1;Name=WP_004014228.1;gbkey=CDS;product=integrase;protein_id=WP_004014228.1;transl_table=11 NC_008258.1 RefSeq gene 278936 279280 . - . ID=gene280;Name=SFV_RS01400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01400 NC_008258.1 Protein Homology CDS 278936 279280 . - 0 ID=cds274;Parent=gene280;Dbxref=Genbank:WP_024259156.1;Name=WP_024259156.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024259156.1;transl_table=11 NC_008258.1 RefSeq gene 279307 279474 . - . ID=gene281;Name=SFV_RS01405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01405 NC_008258.1 Protein Homology CDS 279307 279474 . - 0 ID=cds275;Parent=gene281;Dbxref=Genbank:WP_000545714.1;Name=WP_000545714.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000545714.1;transl_table=11 NC_008258.1 RefSeq gene 279662 280501 . - . ID=gene282;Name=SFV_RS01410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01410;old_locus_tag=SFV_0260 NC_008258.1 Protein Homology CDS 279662 280501 . - 0 ID=cds276;Parent=gene282;Dbxref=Genbank:WP_000208039.1;Name=WP_000208039.1;gbkey=CDS;product=phage protein;protein_id=WP_000208039.1;transl_table=11 NC_008258.1 RefSeq gene 280503 281159 . - . ID=gene283;Name=SFV_RS01415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01415;old_locus_tag=SFV_0261 NC_008258.1 Protein Homology CDS 280503 281159 . - 0 ID=cds277;Parent=gene283;Dbxref=Genbank:WP_000034222.1;Name=WP_000034222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000034222.1;transl_table=11 NC_008258.1 RefSeq gene 281146 281463 . - . ID=gene284;Name=SFV_RS01420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01420;old_locus_tag=SFV_0262 NC_008258.1 Protein Homology CDS 281146 281463 . - 0 ID=cds278;Parent=gene284;Dbxref=Genbank:WP_000156545.1;Name=WP_000156545.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000156545.1;transl_table=11 NC_008258.1 RefSeq gene 281566 281922 . - . ID=gene285;Name=SFV_RS01425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01425;old_locus_tag=SFV_0263 NC_008258.1 Protein Homology CDS 281566 281922 . - 0 ID=cds279;Parent=gene285;Dbxref=Genbank:WP_011587189.1;Name=WP_011587189.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011587189.1;transl_table=11 NC_008258.1 RefSeq gene 281919 282083 . - . ID=gene286;Name=SFV_RS01430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01430 NC_008258.1 Protein Homology CDS 281919 282083 . - 0 ID=cds280;Parent=gene286;Dbxref=Genbank:WP_001253248.1;Name=WP_001253248.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001253248.1;transl_table=11 NC_008258.1 RefSeq gene 282100 282414 . - . ID=gene287;Name=SFV_RS01435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01435 NC_008258.1 Protein Homology CDS 282100 282414 . - 0 ID=cds281;Parent=gene287;Dbxref=Genbank:WP_000753554.1;Name=WP_000753554.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000753554.1;transl_table=11 NC_008258.1 RefSeq gene 282426 282908 . - . ID=gene288;Name=SFV_RS01440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01440;old_locus_tag=SFV_0264 NC_008258.1 Protein Homology CDS 282426 282908 . - 0 ID=cds282;Parent=gene288;Dbxref=Genbank:WP_000041329.1;Name=WP_000041329.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000041329.1;transl_table=11 NC_008258.1 RefSeq gene 282892 283794 . - . ID=gene289;Name=SFV_RS01445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01445;old_locus_tag=SFV_0265 NC_008258.1 Protein Homology CDS 282892 283794 . - 0 ID=cds283;Parent=gene289;Dbxref=Genbank:WP_000065843.1;Name=WP_000065843.1;gbkey=CDS;product=DNA recombinase;protein_id=WP_000065843.1;transl_table=11 NC_008258.1 RefSeq gene 283791 284099 . - . ID=gene290;Name=SFV_RS01450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01450;old_locus_tag=SFV_0266 NC_008258.1 Protein Homology CDS 283791 284099 . - 0 ID=cds284;Parent=gene290;Dbxref=Genbank:WP_000604111.1;Name=WP_000604111.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000604111.1;transl_table=11 NC_008258.1 RefSeq repeat_region 284316 285090 . + . ID=id26;gbkey=repeat_region NC_008258.1 RefSeq region 284319 285086 . + . ID=id27;gbkey=mobile_element NC_008258.1 RefSeq gene 284425 284649 . + . ID=gene291;Name=SFV_RS01455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01455 NC_008258.1 Protein Homology CDS 284425 284649 . + 0 ID=cds285;Parent=gene291;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 284568 285071 . + . ID=gene292;Name=SFV_RS24445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24445;old_locus_tag=SFV_0268 NC_008258.1 Protein Homology CDS 284568 285071 . + 0 ID=cds286;Parent=gene292;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 285825 286307 . + . ID=gene293;Name=SFV_RS01465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01465 NC_008258.1 Protein Homology CDS 285825 286307 . + 0 ID=cds287;Parent=gene293;Dbxref=Genbank:WP_000281856.1;Name=WP_000281856.1;gbkey=CDS;product=superinfection exclusion protein B;protein_id=WP_000281856.1;transl_table=11 NC_008258.1 RefSeq gene 286308 286631 . - . ID=gene294;Name=SFV_RS01470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01470;old_locus_tag=SFV_0269 NC_008258.1 Protein Homology CDS 286308 286631 . - 0 ID=cds288;Parent=gene294;Dbxref=Genbank:WP_000340005.1;Name=WP_000340005.1;gbkey=CDS;product=antitermination protein;protein_id=WP_000340005.1;transl_table=11 NC_008258.1 RefSeq gene 286936 287340 . - . ID=gene295;Name=SFV_RS01475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01475 NC_008258.1 Protein Homology CDS 286936 287340 . - 0 ID=cds289;Parent=gene295;Dbxref=Genbank:WP_000618042.1;Name=WP_000618042.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000618042.1;transl_table=11 NC_008258.1 RefSeq gene 287337 287969 . - . ID=gene296;Name=SFV_RS01480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01480;old_locus_tag=SFV_0270 NC_008258.1 Protein Homology CDS 287337 287969 . - 0 ID=cds290;Parent=gene296;Dbxref=Genbank:WP_000028392.1;Name=WP_000028392.1;gbkey=CDS;product=repressor;protein_id=WP_000028392.1;transl_table=11 NC_008258.1 RefSeq gene 288073 288288 . + . ID=gene297;Name=SFV_RS01485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01485 NC_008258.1 Protein Homology CDS 288073 288288 . + 0 ID=cds291;Parent=gene297;Dbxref=Genbank:WP_001194218.1;Name=WP_001194218.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001194218.1;transl_table=11 NC_008258.1 RefSeq repeat_region 288356 289786 . + . ID=id28;gbkey=repeat_region NC_008258.1 RefSeq region 288356 289782 . - . ID=id29;gbkey=mobile_element NC_008258.1 RefSeq gene 288369 289697 . - . ID=gene298;Name=SFV_RS01490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01490;old_locus_tag=SFV_0271 NC_008258.1 Protein Homology CDS 288369 289697 . - 0 ID=cds292;Parent=gene298;Dbxref=Genbank:WP_000547026.1;Name=WP_000547026.1;gbkey=CDS;product=transposase;protein_id=WP_000547026.1;transl_table=11 NC_008258.1 RefSeq gene 289847 290125 . + . ID=gene299;Name=SFV_RS01495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01495 NC_008258.1 Protein Homology CDS 289847 290125 . + 0 ID=cds293;Parent=gene299;Dbxref=Genbank:WP_001177656.1;Name=WP_001177656.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001177656.1;transl_table=11 NC_008258.1 RefSeq gene 290308 291132 . + . ID=gene300;Name=SFV_RS01500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01500;old_locus_tag=SFV_0272 NC_008258.1 Protein Homology CDS 290308 291132 . + 0 ID=cds294;Parent=gene300;Dbxref=Genbank:WP_000539335.1;Name=WP_000539335.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000539335.1;transl_table=11 NC_008258.1 RefSeq gene 291122 292558 . + . ID=gene301;Name=SFV_RS01505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01505;old_locus_tag=SFV_0273 NC_008258.1 Protein Homology CDS 291122 292558 . + 0 ID=cds295;Parent=gene301;Dbxref=Genbank:WP_000131484.1;Name=WP_000131484.1;gbkey=CDS;product=helicase;protein_id=WP_000131484.1;transl_table=11 NC_008258.1 RefSeq gene 292635 293075 . + . ID=gene302;Name=SFV_RS01510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01510 NC_008258.1 Protein Homology CDS 292635 293075 . + 0 ID=cds296;Parent=gene302;Dbxref=Genbank:WP_000736913.1;Name=WP_000736913.1;gbkey=CDS;product=phage protein NinB;protein_id=WP_000736913.1;transl_table=11 NC_008258.1 RefSeq gene 293072 293248 . + . ID=gene303;Name=SFV_RS01515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01515 NC_008258.1 Protein Homology CDS 293072 293248 . + 0 ID=cds297;Parent=gene303;Dbxref=Genbank:WP_001254255.1;Name=WP_001254255.1;gbkey=CDS;product=protein ninE;protein_id=WP_001254255.1;transl_table=11 NC_008258.1 RefSeq repeat_region 293094 293249 . + . ID=id30;gbkey=repeat_region NC_008258.1 RefSeq gene 293251 293652 . + . ID=gene304;Name=SFV_RS01520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01520 NC_008258.1 Protein Homology CDS 293251 293652 . + 0 ID=cds298;Parent=gene304;Dbxref=Genbank:WP_000924599.1;Name=WP_000924599.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000924599.1;transl_table=11 NC_008258.1 RefSeq gene 293645 293821 . + . ID=gene305;Name=SFV_RS01525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01525 NC_008258.1 Protein Homology CDS 293645 293821 . + 0 ID=cds299;Parent=gene305;Dbxref=Genbank:WP_000950946.1;Name=WP_000950946.1;gbkey=CDS;product=protein ninF;protein_id=WP_000950946.1;transl_table=11 NC_008258.1 RefSeq gene 293814 294536 . + . ID=gene306;Name=SFV_RS01530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01530;old_locus_tag=SFV_0275 NC_008258.1 Protein Homology CDS 293814 294536 . + 0 ID=cds300;Parent=gene306;Dbxref=Genbank:WP_001003997.1;Name=WP_001003997.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_001003997.1;transl_table=11 NC_008258.1 RefSeq gene 294536 294826 . + . ID=gene307;Name=SFV_RS01535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01535 NC_008258.1 Protein Homology CDS 294536 294826 . + 0 ID=cds301;Parent=gene307;Dbxref=Genbank:WP_000002254.1;Name=WP_000002254.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000002254.1;transl_table=11 NC_008258.1 RefSeq gene 294823 295185 . + . ID=gene308;Name=SFV_RS01540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01540;old_locus_tag=SFV_0276 NC_008258.1 Protein Homology CDS 294823 295185 . + 0 ID=cds302;Parent=gene308;Dbxref=Genbank:WP_001008210.1;Name=WP_001008210.1;gbkey=CDS;product=endodeoxyribonuclease;protein_id=WP_001008210.1;transl_table=11 NC_008258.1 RefSeq gene 295182 295370 . + . ID=gene309;Name=SFV_RS01545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01545 NC_008258.1 Protein Homology CDS 295182 295370 . + 0 ID=cds303;Parent=gene309;Dbxref=Genbank:WP_000994515.1;Name=WP_000994515.1;gbkey=CDS;product=protein ninH;protein_id=WP_000994515.1;transl_table=11 NC_008258.1 RefSeq gene 295367 295990 . + . ID=gene310;Name=SFV_RS01550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01550;old_locus_tag=SFV_0277 NC_008258.1 Protein Homology CDS 295367 295990 . + 0 ID=cds304;Parent=gene310;Dbxref=Genbank:WP_001235461.1;Name=WP_001235461.1;gbkey=CDS;product=antitermination protein;protein_id=WP_001235461.1;transl_table=11 NC_008258.1 RefSeq gene 296659 296982 . + . ID=gene311;Name=SFV_RS01555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01555;old_locus_tag=SFV_0278 NC_008258.1 Protein Homology CDS 296659 296982 . + 0 ID=cds305;Parent=gene311;Dbxref=Genbank:WP_000783734.1;Name=WP_000783734.1;gbkey=CDS;product=holin;protein_id=WP_000783734.1;transl_table=11 NC_008258.1 RefSeq gene 296966 297443 . + . ID=gene312;Name=SFV_RS01560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01560;pseudo=true NC_008258.1 Protein Homology CDS 296966 297443 . + 0 ID=cds306;Parent=gene312;exception=annotated by transcript or proteomic data;gbkey=CDS;product=lysozyme;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 297440 297877 . + . ID=gene313;Name=SFV_RS01565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01565;old_locus_tag=SFV_0280 NC_008258.1 Protein Homology CDS 297440 297877 . + 0 ID=cds307;Parent=gene313;Dbxref=Genbank:WP_005104933.1;Name=WP_005104933.1;gbkey=CDS;product=endopeptidase;protein_id=WP_005104933.1;transl_table=11 NC_008258.1 RefSeq repeat_region 297440 297552 . + . ID=id31;gbkey=repeat_region NC_008258.1 RefSeq gene 298079 298600 . + . ID=gene314;Name=SFV_RS01570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01570;old_locus_tag=SFV_0281 NC_008258.1 Protein Homology CDS 298079 298600 . + 0 ID=cds308;Parent=gene314;Dbxref=Genbank:WP_001028466.1;Name=WP_001028466.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_001028466.1;transl_table=11 NC_008258.1 RefSeq repeat_region 299049 300318 . + . ID=id32;gbkey=repeat_region NC_008258.1 RefSeq region 299053 300316 . + . ID=id33;gbkey=mobile_element NC_008258.1 RefSeq gene 299117 299419 . + . ID=gene315;Name=SFV_RS01575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01575;old_locus_tag=SFV_0282 NC_008258.1 Protein Homology CDS 299117 299419 . + 0 ID=cds309;Parent=gene315;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 299455 300273 . + . ID=gene316;Name=SFV_RS01580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01580;old_locus_tag=SFV_0283 NC_008258.1 Protein Homology CDS 299455 300273 . + 0 ID=cds310;Parent=gene316;Dbxref=Genbank:WP_000336644.1;Name=WP_000336644.1;gbkey=CDS;product=transposase;protein_id=WP_000336644.1;transl_table=11 NC_008258.1 RefSeq gene 300301 300675 . + . ID=gene317;Name=SFV_RS01585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01585 NC_008258.1 Protein Homology CDS 300301 300675 . + 0 ID=cds311;Parent=gene317;Dbxref=Genbank:WP_045177352.1;Name=WP_045177352.1;gbkey=CDS;product=integrase;protein_id=WP_045177352.1;transl_table=11 NC_008258.1 RefSeq repeat_region 300322 300735 . + . ID=id34;gbkey=repeat_region NC_008258.1 RefSeq gene 300690 300765 . - . ID=gene318;Name=SFV_RS01590;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS01590;old_locus_tag=SFV_0284 NC_008258.1 tRNAscan-SE tRNA 300690 300765 . - . ID=rna6;Parent=gene318;anticodon=(pos:complement(300730..300732));gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 300690 300765 . - . ID=id35;Parent=rna6;anticodon=(pos:complement(300730..300732));gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 300880 302133 . - . ID=gene319;Name=SFV_RS01595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01595;old_locus_tag=SFV_0285 NC_008258.1 Protein Homology CDS 300880 302133 . - 0 ID=cds312;Parent=gene319;Dbxref=Genbank:WP_000893267.1;Name=WP_000893267.1;gbkey=CDS;product=gamma-glutamyl phosphate reductase;protein_id=WP_000893267.1;transl_table=11 NC_008258.1 RefSeq gene 302145 303248 . - . ID=gene320;Name=SFV_RS01600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01600;old_locus_tag=SFV_0286 NC_008258.1 Protein Homology CDS 302145 303248 . - 0 ID=cds313;Parent=gene320;Dbxref=Genbank:WP_001285288.1;Name=WP_001285288.1;gbkey=CDS;product=glutamate 5-kinase;protein_id=WP_001285288.1;transl_table=11 NC_008258.1 RefSeq repeat_region 303416 304198 . + . ID=id36;gbkey=repeat_region NC_008258.1 RefSeq region 303424 304191 . - . ID=id37;gbkey=mobile_element NC_008258.1 RefSeq gene 303439 303942 . - . ID=gene321;Name=SFV_RS01605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01605;old_locus_tag=SFV_0287 NC_008258.1 Protein Homology CDS 303439 303942 . - 0 ID=cds314;Parent=gene321;Dbxref=Genbank:WP_000089832.1;Name=WP_000089832.1;gbkey=CDS;product=transposase;protein_id=WP_000089832.1;transl_table=11 NC_008258.1 RefSeq gene 303861 304085 . - . ID=gene322;Name=SFV_RS01610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01610 NC_008258.1 Protein Homology CDS 303861 304085 . - 0 ID=cds315;Parent=gene322;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 304312 305367 . + . ID=gene323;Name=SFV_RS01615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01615;old_locus_tag=SFV_0289 NC_008258.1 Protein Homology CDS 304312 305367 . + 0 ID=cds316;Parent=gene323;Dbxref=Genbank:WP_000749864.1;Name=WP_000749864.1;gbkey=CDS;product=phosphoporin protein E;protein_id=WP_000749864.1;transl_table=11 NC_008258.1 RefSeq gene 305406 305807 . - . ID=gene324;Name=SFV_RS01620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01620;old_locus_tag=SFV_0290 NC_008258.1 Protein Homology CDS 305406 305807 . - 0 ID=cds317;Parent=gene324;Dbxref=Genbank:WP_000174677.1;Name=WP_000174677.1;Note=involved in the expression of csgBA which is involved in curli formation%3B interacts with sigmaS;gbkey=CDS;product=sigma factor-binding protein Crl;protein_id=WP_000174677.1;transl_table=11 NC_008258.1 RefSeq gene 305865 307109 . - . ID=gene325;Name=frsA;gbkey=Gene;gene=frsA;gene_biotype=protein_coding;locus_tag=SFV_RS01625;old_locus_tag=SFV_0291 NC_008258.1 Protein Homology CDS 305865 307109 . - 0 ID=cds318;Parent=gene325;Dbxref=Genbank:WP_000189558.1;Name=WP_000189558.1;Note=forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc%3B FrsA may promote fermentation;gbkey=CDS;gene=frsA;product=esterase;protein_id=WP_000189558.1;transl_table=11 NC_008258.1 RefSeq gene 307201 307659 . - . ID=gene326;Name=SFV_RS01630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01630;old_locus_tag=SFV_0292 NC_008258.1 Protein Homology CDS 307201 307659 . - 0 ID=cds319;Parent=gene326;Dbxref=Genbank:WP_001291990.1;Name=WP_001291990.1;Note=catalyzes the conversion of guanine%2C xanthine and%2C to a lesser extent%2C hypoxanthine to GMP%2C XMP and IMP%2C respectively;gbkey=CDS;product=xanthine phosphoribosyltransferase;protein_id=WP_001291990.1;transl_table=11 NC_008258.1 RefSeq gene 307921 309378 . + . ID=gene327;Name=SFV_RS01635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01635;old_locus_tag=SFV_0293 NC_008258.1 Protein Homology CDS 307921 309378 . + 0 ID=cds320;Parent=gene327;Dbxref=Genbank:WP_001293029.1;Name=WP_001293029.1;Note=catalyzes the hydrolysis of Xaa-His dipeptides;gbkey=CDS;product=aminoacyl-histidine dipeptidase;protein_id=WP_001293029.1;transl_table=11 NC_008258.1 RefSeq gene 309435 309935 . - . ID=gene328;Name=prfH;gbkey=Gene;gene=prfH;gene_biotype=pseudogene;locus_tag=SFV_RS01640;pseudo=true NC_008258.1 Protein Homology CDS 309435 309935 . - 0 ID=cds321;Parent=gene328;Note=similar to release factor 1 and 2;gbkey=CDS;gene=prfH;product=peptide chain release factor-like protein;pseudo=true;transl_except=(pos:complement(309540..309542)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 310046 311154 . - . ID=gene329;Name=SFV_RS01645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01645;old_locus_tag=SFV_0295;pseudo=true NC_008258.1 Protein Homology CDS 310046 311154 . - 0 ID=cds322;Parent=gene329;Note=mutations in this gene result in a compromised ability for drug-inducible mexXY expression%3B expression is inducible by the same ribosome-targeting agents that induce mexXY;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 311400 311774 . - . ID=gene330;Name=SFV_RS01650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01650;old_locus_tag=SFV_0296 NC_008258.1 Protein Homology CDS 311400 311774 . - 0 ID=cds323;Parent=gene330;Dbxref=Genbank:WP_024260224.1;Name=WP_024260224.1;gbkey=CDS;product=acyltransferase;protein_id=WP_024260224.1;transl_table=11 NC_008258.1 RefSeq gene 311862 312260 . - . ID=gene331;Name=SFV_RS01655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01655;old_locus_tag=SFV_0297 NC_008258.1 Protein Homology CDS 311862 312260 . - 0 ID=cds324;Parent=gene331;Dbxref=Genbank:WP_001263491.1;Name=WP_001263491.1;Note=YafO overproduction induces toxicity%3B it is believed to be the toxin of a toxin-antitoxin pair%3B unknown function;gbkey=CDS;product=toxin YafO;protein_id=WP_001263491.1;transl_table=11 NC_008258.1 RefSeq gene 312263 312556 . - . ID=gene332;Name=SFV_RS01660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01660;old_locus_tag=SFV_0298 NC_008258.1 Protein Homology CDS 312263 312556 . - 0 ID=cds325;Parent=gene332;Dbxref=Genbank:WP_000554759.1;Name=WP_000554759.1;gbkey=CDS;product=antitoxin;protein_id=WP_000554759.1;transl_table=11 NC_008258.1 RefSeq gene 312608 313663 . - . ID=gene333;Name=SFV_RS01665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01665;old_locus_tag=SFV_0299 NC_008258.1 Protein Homology CDS 312608 313663 . - 0 ID=cds326;Parent=gene333;Dbxref=Genbank:WP_001226172.1;Name=WP_001226172.1;Note=involved in translesion DNA polymerization with beta clamp of polymerase III%3B belongs to Y family of polymerases%3B does not contain proofreading function;gbkey=CDS;product=DNA polymerase IV;protein_id=WP_001226172.1;transl_table=11 NC_008258.1 RefSeq gene 313734 314519 . - . ID=gene334;Name=SFV_RS01670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01670;old_locus_tag=SFV_0301 NC_008258.1 Protein Homology CDS 313734 314519 . - 0 ID=cds327;Parent=gene334;Dbxref=Genbank:WP_000207560.1;Name=WP_000207560.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000207560.1;transl_table=11 NC_008258.1 RefSeq gene 314464 316203 . + . ID=gene335;Name=SFV_RS01675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01675;old_locus_tag=SFV_0300 NC_008258.1 Protein Homology CDS 314464 316203 . + 0 ID=cds328;Parent=gene335;Dbxref=Genbank:WP_005104950.1;Name=WP_005104950.1;gbkey=CDS;product=flagellar biosynthesis protein FlhA;protein_id=WP_005104950.1;transl_table=11 NC_008258.1 RefSeq gene 316420 316917 . - . ID=gene336;Name=SFV_RS01680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01680;old_locus_tag=SFV_0302 NC_008258.1 Protein Homology CDS 316420 316917 . - 0 ID=cds329;Parent=gene336;Dbxref=Genbank:WP_000006250.1;Name=WP_000006250.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000006250.1;transl_table=11 NC_008258.1 RefSeq gene 317093 317674 . - . ID=gene337;Name=SFV_RS01685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01685;old_locus_tag=SFV_0303 NC_008258.1 Protein Homology CDS 317093 317674 . - 0 ID=cds330;Parent=gene337;Dbxref=Genbank:WP_049760307.1;Name=WP_049760307.1;gbkey=CDS;product=hydrolase;protein_id=WP_049760307.1;transl_table=11 NC_008258.1 RefSeq gene 317998 318738 . + . ID=gene338;Name=SFV_RS01690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01690;old_locus_tag=SFV_0304 NC_008258.1 Protein Homology CDS 317998 318738 . + 0 ID=cds331;Parent=gene338;Dbxref=Genbank:WP_001225677.1;Name=WP_001225677.1;gbkey=CDS;product=transpeptidase;protein_id=WP_001225677.1;transl_table=11 NC_008258.1 RefSeq gene 318709 319476 . - . ID=gene339;Name=SFV_RS01695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01695;old_locus_tag=SFV_0305 NC_008258.1 Protein Homology CDS 318709 319476 . - 0 ID=cds332;Parent=gene339;Dbxref=Genbank:WP_000333379.1;Name=WP_000333379.1;gbkey=CDS;product=glutamine amidotransferase;protein_id=WP_000333379.1;transl_table=11 NC_008258.1 RefSeq gene 319682 320260 . - . ID=gene340;Name=gmhA;gbkey=Gene;gene=gmhA;gene_biotype=protein_coding;locus_tag=SFV_RS01700 NC_008258.1 Protein Homology CDS 319682 320260 . - 0 ID=cds333;Parent=gene340;Dbxref=Genbank:WP_024260225.1;Name=WP_024260225.1;Note=catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate;gbkey=CDS;gene=gmhA;product=phosphoheptose isomerase;protein_id=WP_024260225.1;transl_table=11 NC_008258.1 RefSeq gene 320500 322944 . + . ID=gene341;Name=fadE;gbkey=Gene;gene=fadE;gene_biotype=protein_coding;locus_tag=SFV_RS01705;old_locus_tag=SFV_0307 NC_008258.1 Protein Homology CDS 320500 322944 . + 0 ID=cds334;Parent=gene341;Dbxref=Genbank:WP_000973117.1;Name=WP_000973117.1;Note=functions in fatty acid oxidation%3B converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA;gbkey=CDS;gene=fadE;product=acyl-CoA dehydrogenase;protein_id=WP_000973117.1;transl_table=11 NC_008258.1 RefSeq gene 322987 323433 . - . ID=gene342;Name=SFV_RS01710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01710;old_locus_tag=SFV_0308 NC_008258.1 Protein Homology CDS 322987 323433 . - 0 ID=cds335;Parent=gene342;Dbxref=Genbank:WP_005100645.1;Name=WP_005100645.1;Note=inactivates vertebrate C-type lysozyme;gbkey=CDS;product=hypothetical protein;protein_id=WP_005100645.1;transl_table=11 NC_008258.1 RefSeq gene 323617 324387 . + . ID=gene343;Name=SFV_RS01715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01715;old_locus_tag=SFV_0309 NC_008258.1 Protein Homology CDS 323617 324387 . + 0 ID=cds336;Parent=gene343;Dbxref=Genbank:WP_001139560.1;Name=WP_001139560.1;Note=NAD(P)-binding;gbkey=CDS;product=hypothetical protein;protein_id=WP_001139560.1;transl_table=11 NC_008258.1 RefSeq gene 324795 325115 . - . ID=gene344;Name=SFV_RS01720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01720 NC_008258.1 Protein Homology CDS 324795 325115 . - 0 ID=cds337;Parent=gene344;Dbxref=Genbank:WP_000343515.1;Name=WP_000343515.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000343515.1;transl_table=11 NC_008258.1 RefSeq gene 325436 326230 . - . ID=gene345;Name=SFV_RS01725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01725;old_locus_tag=SFV_0310 NC_008258.1 Protein Homology CDS 325436 326230 . - 0 ID=cds338;Parent=gene345;Dbxref=Genbank:WP_005104959.1;Name=WP_005104959.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_005104959.1;transl_table=11 NC_008258.1 RefSeq gene 326422 328899 . - . ID=gene346;Name=SFV_RS01730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01730;old_locus_tag=SFV_0311 NC_008258.1 Protein Homology CDS 326422 328899 . - 0 ID=cds339;Parent=gene346;Dbxref=Genbank:WP_024260226.1;Name=WP_024260226.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_024260226.1;transl_table=11 NC_008258.1 RefSeq gene 328896 329303 . - . ID=gene347;Name=SFV_RS01735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01735;old_locus_tag=SFV_0312 NC_008258.1 Protein Homology CDS 328896 329303 . - 0 ID=cds340;Parent=gene347;Dbxref=Genbank:WP_005053237.1;Name=WP_005053237.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_005053237.1;transl_table=11 NC_008258.1 RefSeq gene 329325 329771 . - . ID=gene348;Name=SFV_RS01740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01740;old_locus_tag=SFV_0313 NC_008258.1 Protein Homology CDS 329325 329771 . - 0 ID=cds341;Parent=gene348;Dbxref=Genbank:WP_000203115.1;Name=WP_000203115.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000203115.1;transl_table=11 NC_008258.1 RefSeq gene 329794 332007 . - . ID=gene349;Name=SFV_RS01745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01745;old_locus_tag=SFV_0314 NC_008258.1 Protein Homology CDS 329794 332007 . - 0 ID=cds342;Parent=gene349;Dbxref=Genbank:WP_000011499.1;Name=WP_000011499.1;gbkey=CDS;product=type VI secretion protein Vgr;protein_id=WP_000011499.1;transl_table=11 NC_008258.1 RefSeq gene 332032 332418 . - . ID=gene350;Name=SFV_RS01750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01750 NC_008258.1 Protein Homology CDS 332032 332418 . - 0 ID=cds343;Parent=gene350;Dbxref=Genbank:WP_000667623.1;Name=WP_000667623.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000667623.1;transl_table=11 NC_008258.1 RefSeq gene 332415 332900 . - . ID=gene351;Name=SFV_RS01755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01755 NC_008258.1 Protein Homology CDS 332415 332900 . - 0 ID=cds344;Parent=gene351;Dbxref=Genbank:WP_001201709.1;Name=WP_001201709.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001201709.1;transl_table=11 NC_008258.1 RefSeq repeat_region 333064 333841 . + . ID=id38;gbkey=repeat_region NC_008258.1 RefSeq region 333070 333837 . - . ID=id39;gbkey=mobile_element NC_008258.1 RefSeq gene 333085 333588 . - . ID=gene352;Name=SFV_RS01760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01760;old_locus_tag=SFV_0315 NC_008258.1 Protein Homology CDS 333085 333588 . - 0 ID=cds345;Parent=gene352;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 334201 334920 . + . ID=gene353;Name=SFV_RS01765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01765;old_locus_tag=SFV_0317 NC_008258.1 Protein Homology CDS 334201 334920 . + 0 ID=cds346;Parent=gene353;Dbxref=Genbank:WP_001102119.1;Name=WP_001102119.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_001102119.1;transl_table=11 NC_008258.1 RefSeq gene 334931 336358 . + . ID=gene354;Name=SFV_RS01770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01770;old_locus_tag=SFV_0318 NC_008258.1 Protein Homology CDS 334931 336358 . + 0 ID=cds347;Parent=gene354;Dbxref=Genbank:WP_000023919.1;Name=WP_000023919.1;gbkey=CDS;product=amino acid dehydrogenase;protein_id=WP_000023919.1;transl_table=11 NC_008258.1 RefSeq gene 336351 337046 . + . ID=gene355;Name=SFV_RS01775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01775;old_locus_tag=SFV_0319 NC_008258.1 Protein Homology CDS 336351 337046 . + 0 ID=cds348;Parent=gene355;Dbxref=Genbank:WP_000370403.1;Name=WP_000370403.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000370403.1;transl_table=11 NC_008258.1 RefSeq gene 337120 337242 . - . ID=gene356;Name=SFV_RS01780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01780 NC_008258.1 Protein Homology CDS 337120 337242 . - 0 ID=cds349;Parent=gene356;Dbxref=Genbank:WP_000145951.1;Name=WP_000145951.1;gbkey=CDS;product=universal stress protein;protein_id=WP_000145951.1;transl_table=11 NC_008258.1 RefSeq gene 337289 337957 . - . ID=gene357;Name=SFV_RS01785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01785;old_locus_tag=SFV_0321 NC_008258.1 Protein Homology CDS 337289 337957 . - 0 ID=cds350;Parent=gene357;Dbxref=Genbank:WP_000003122.1;Name=WP_000003122.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000003122.1;transl_table=11 NC_008258.1 RefSeq gene 338171 339841 . - . ID=gene358;Name=SFV_RS01790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01790;old_locus_tag=SFV_0322 NC_008258.1 Protein Homology CDS 338171 339841 . - 0 ID=cds351;Parent=gene358;Dbxref=Genbank:WP_001159106.1;Name=WP_001159106.1;Note=catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine;gbkey=CDS;product=oxygen-dependent choline dehydrogenase;protein_id=WP_001159106.1;transl_table=11 NC_008258.1 RefSeq gene 339855 341327 . - . ID=gene359;Name=SFV_RS01795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01795;old_locus_tag=SFV_0323 NC_008258.1 Protein Homology CDS 339855 341327 . - 0 ID=cds352;Parent=gene359;Dbxref=Genbank:WP_000089071.1;Name=WP_000089071.1;gbkey=CDS;product=NAD/NADP-dependent betaine aldehyde dehydrogenase;protein_id=WP_000089071.1;transl_table=11 NC_008258.1 RefSeq gene 341341 341928 . - . ID=gene360;Name=SFV_RS01800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01800;old_locus_tag=SFV_0324 NC_008258.1 Protein Homology CDS 341341 341928 . - 0 ID=cds353;Parent=gene360;Dbxref=Genbank:WP_001295527.1;Name=WP_001295527.1;Note=HTH-type%3B bet1%3B Repressor involved in choline regulation of the bet genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001295527.1;transl_table=11 NC_008258.1 RefSeq gene 342056 344089 . + . ID=gene361;Name=SFV_RS01805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01805;old_locus_tag=SFV_0325 NC_008258.1 Protein Homology CDS 342056 344089 . + 0 ID=cds354;Parent=gene361;Dbxref=Genbank:WP_000131065.1;Name=WP_000131065.1;Note=proton-motive-force-driven choline transporter;gbkey=CDS;product=choline transporter BetT;protein_id=WP_000131065.1;transl_table=11 NC_008258.1 RefSeq repeat_region 344247 345023 . + . ID=id40;gbkey=repeat_region NC_008258.1 RefSeq region 344249 345016 . + . ID=id41;gbkey=mobile_element NC_008258.1 RefSeq gene 344355 344579 . + . ID=gene362;Name=SFV_RS01810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01810 NC_008258.1 Protein Homology CDS 344355 344579 . + 0 ID=cds355;Parent=gene362;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 344498 345001 . + . ID=gene363;Name=SFV_RS01815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01815;old_locus_tag=SFV_0327 NC_008258.1 Protein Homology CDS 344498 345001 . + 0 ID=cds356;Parent=gene363;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 345115 347208 . - . ID=gene364;Name=SFV_RS01820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01820;old_locus_tag=SFV_0328 NC_008258.1 Protein Homology CDS 345115 347208 . - 0 ID=cds357;Parent=gene364;Dbxref=Genbank:WP_001192424.1;Name=WP_001192424.1;gbkey=CDS;product=transposase;protein_id=WP_001192424.1;transl_table=11 NC_008258.1 RefSeq gene 347210 347461 . - . ID=gene365;Name=SFV_RS01825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01825 NC_008258.1 Protein Homology CDS 347210 347461 . - 0 ID=cds358;Parent=gene365;Dbxref=Genbank:WP_001249843.1;Name=WP_001249843.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_001249843.1;transl_table=11 NC_008258.1 RefSeq gene 347654 348187 . + . ID=gene366;Name=SFV_RS01830;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS01830;pseudo=true NC_008258.1 Protein Homology CDS 347654 348187 . + 0 ID=cds359;Parent=gene366;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:347903..347905%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 348297 348434 . + . ID=id42;gbkey=repeat_region NC_008258.1 RefSeq gene 348454 349380 . + . ID=gene367;Name=tauA;gbkey=Gene;gene=tauA;gene_biotype=protein_coding;locus_tag=SFV_RS01835;old_locus_tag=SFV_0329 NC_008258.1 Protein Homology CDS 348454 349380 . + 0 ID=cds360;Parent=gene367;Dbxref=Genbank:WP_045177322.1;Name=WP_045177322.1;Note=with TauB and TauC is responsible for taurine uptake.;gbkey=CDS;gene=tauA;product=taurine ABC transporter substrate-binding protein;protein_id=WP_045177322.1;transl_table=11 NC_008258.1 RefSeq gene 349393 350160 . + . ID=gene368;Name=tauB;gbkey=Gene;gene=tauB;gene_biotype=protein_coding;locus_tag=SFV_RS01840;old_locus_tag=SFV_0330 NC_008258.1 Protein Homology CDS 349393 350160 . + 0 ID=cds361;Parent=gene368;Dbxref=Genbank:WP_000939369.1;Name=WP_000939369.1;Note=Part of the ABC transporter complex tauABC involved in taurine import;gbkey=CDS;gene=tauB;product=taurine import ATP-binding protein TauB;protein_id=WP_000939369.1;transl_table=11 NC_008258.1 RefSeq gene 350157 350984 . + . ID=gene369;Name=SFV_RS01845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01845;old_locus_tag=SFV_0331 NC_008258.1 Protein Homology CDS 350157 350984 . + 0 ID=cds362;Parent=gene369;Dbxref=Genbank:WP_000114607.1;Name=WP_000114607.1;gbkey=CDS;product=taurine ABC transporter permease;protein_id=WP_000114607.1;transl_table=11 NC_008258.1 RefSeq gene 350981 351832 . + . ID=gene370;Name=tauD;gbkey=Gene;gene=tauD;gene_biotype=protein_coding;locus_tag=SFV_RS01850;old_locus_tag=SFV_0332 NC_008258.1 Protein Homology CDS 350981 351832 . + 0 ID=cds363;Parent=gene370;Dbxref=Genbank:WP_000004031.1;Name=WP_000004031.1;Note=catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide%3B non-heme iron oxidase%3B allows the use of taurine as an alternative sulfur source%3B forms homodimers;gbkey=CDS;gene=tauD;product=taurine dioxygenase;protein_id=WP_000004031.1;transl_table=11 NC_008258.1 RefSeq gene 351938 352912 . - . ID=gene371;Name=SFV_RS01855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01855;old_locus_tag=SFV_0333 NC_008258.1 Protein Homology CDS 351938 352912 . - 0 ID=cds364;Parent=gene371;Dbxref=Genbank:WP_024260227.1;Name=WP_024260227.1;gbkey=CDS;product=delta-aminolevulinic acid dehydratase;protein_id=WP_024260227.1;transl_table=11 NC_008258.1 RefSeq gene 353439 353810 . + . ID=gene372;Name=SFV_RS01860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01860 NC_008258.1 Protein Homology CDS 353439 353810 . + 0 ID=cds365;Parent=gene372;Dbxref=Genbank:WP_000556491.1;Name=WP_000556491.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000556491.1;transl_table=11 NC_008258.1 RefSeq repeat_region 353805 356038 . + . ID=id43;gbkey=repeat_region NC_008258.1 RefSeq region 353808 354990 . + . ID=id44;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 353899 354264 . + . ID=gene373;Name=SFV_RS01865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01865;old_locus_tag=SFV_0335 NC_008258.1 Protein Homology CDS 353899 354264 . + 0 ID=cds366;Parent=gene373;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 354288 355001 . + . ID=gene374;Name=SFV_RS01870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01870;old_locus_tag=SFV_0336 NC_008258.1 Protein Homology CDS 354288 355001 . + 0 ID=cds367;Parent=gene374;Dbxref=Genbank:WP_000085486.1;Name=WP_000085486.1;gbkey=CDS;product=transposase;protein_id=WP_000085486.1;transl_table=11 NC_008258.1 RefSeq gene 355207 356019 . + . ID=gene375;Name=SFV_RS01875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01875;old_locus_tag=SFV_0337 NC_008258.1 Protein Homology CDS 355207 356019 . + 0 ID=cds368;Parent=gene375;Dbxref=Genbank:WP_000887797.1;Name=WP_000887797.1;gbkey=CDS;product=transposase;protein_id=WP_000887797.1;transl_table=11 NC_008258.1 RefSeq gene 356081 356566 . + . ID=gene376;Name=SFV_RS01880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01880 NC_008258.1 Protein Homology CDS 356081 356566 . + 0 ID=cds369;Parent=gene376;Dbxref=Genbank:WP_000064862.1;Name=WP_000064862.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000064862.1;transl_table=11 NC_008258.1 RefSeq gene 356654 357157 . + . ID=gene377;Name=SFV_RS01885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01885;old_locus_tag=SFV_0338 NC_008258.1 Protein Homology CDS 356654 357157 . + 0 ID=cds370;Parent=gene377;Dbxref=Genbank:WP_000953938.1;Name=WP_000953938.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000953938.1;transl_table=11 NC_008258.1 RefSeq gene 357158 358315 . - . ID=gene378;Name=SFV_RS01890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01890;old_locus_tag=SFV_0339 NC_008258.1 Protein Homology CDS 357158 358315 . - 0 ID=cds371;Parent=gene378;Dbxref=Genbank:WP_000830735.1;Name=WP_000830735.1;Note=this protein has no known enzymatic function;gbkey=CDS;product=beta-lactam-binding protein AmpH;protein_id=WP_000830735.1;transl_table=11 NC_008258.1 RefSeq gene 358453 358647 . + . ID=gene379;Name=SFV_RS01895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01895 NC_008258.1 Protein Homology CDS 358453 358647 . + 0 ID=cds372;Parent=gene379;Dbxref=Genbank:WP_001110751.1;Name=WP_001110751.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001110751.1;transl_table=11 NC_008258.1 RefSeq gene 358667 359887 . + . ID=gene380;Name=SFV_RS01900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01900;old_locus_tag=SFV_0340 NC_008258.1 Protein Homology CDS 358667 359887 . + 0 ID=cds373;Parent=gene380;Dbxref=Genbank:WP_005104989.1;Name=WP_005104989.1;Note=in Escherichia coli SbmA is involved in uptake of microcin J25%3B functions along with FhuA%2C TonB%2C and ExbB/D in this capacity%3B in Sinorhizobium meliloti%2C BacA is essential and required for symbiosis%3B defects appear to affect the cell envelope;gbkey=CDS;product=microcin B17 transporter;protein_id=WP_005104989.1;transl_table=11 NC_008258.1 RefSeq gene 359900 360994 . + . ID=gene381;Name=SFV_RS01905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01905;old_locus_tag=SFV_0341 NC_008258.1 Protein Homology CDS 359900 360994 . + 0 ID=cds374;Parent=gene381;Dbxref=Genbank:WP_000092058.1;Name=WP_000092058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000092058.1;transl_table=11 NC_008258.1 RefSeq gene 361053 361361 . - . ID=gene382;Name=SFV_RS01910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01910;old_locus_tag=SFV_0342 NC_008258.1 Protein Homology CDS 361053 361361 . - 0 ID=cds375;Parent=gene382;Dbxref=Genbank:WP_000763148.1;Name=WP_000763148.1;gbkey=CDS;product=membrane protein;protein_id=WP_000763148.1;transl_table=11 NC_008258.1 RefSeq gene 361621 361833 . + . ID=gene383;Name=SFV_RS01915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01915 NC_008258.1 Protein Homology CDS 361621 361833 . + 0 ID=cds376;Parent=gene383;Dbxref=Genbank:WP_001599861.1;Name=WP_001599861.1;gbkey=CDS;product=membrane protein;protein_id=WP_001599861.1;transl_table=11 NC_008258.1 RefSeq gene 361857 362951 . - . ID=gene384;Name=SFV_RS01920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01920;old_locus_tag=SFV_0344 NC_008258.1 Protein Homology CDS 361857 362951 . - 0 ID=cds377;Parent=gene384;Dbxref=Genbank:WP_000413677.1;Name=WP_000413677.1;gbkey=CDS;product=D-alanine--D-alanine ligase A;protein_id=WP_000413677.1;transl_table=11 NC_008258.1 RefSeq gene 363032 363232 . + . ID=gene385;Name=SFV_RS01925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01925 NC_008258.1 Protein Homology CDS 363032 363232 . + 0 ID=cds378;Parent=gene385;Dbxref=Genbank:WP_001191885.1;Name=WP_001191885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001191885.1;transl_table=11 NC_008258.1 RefSeq gene 363414 363674 . + . ID=gene386;Name=SFV_RS01930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01930;old_locus_tag=SFV_0345 NC_008258.1 Protein Homology CDS 363414 363674 . + 0 ID=cds379;Parent=gene386;Dbxref=Genbank:WP_000792969.1;Name=WP_000792969.1;Note=RpoS stabilzer during Pi starvation%3B anti-adapter protein;gbkey=CDS;product=anti-adapter protein IraP;protein_id=WP_000792969.1;transl_table=11 NC_008258.1 RefSeq gene 363775 365190 . + . ID=gene387;Name=SFV_RS01935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01935;old_locus_tag=SFV_0346 NC_008258.1 Protein Homology CDS 363775 365190 . + 0 ID=cds380;Parent=gene387;Dbxref=Genbank:WP_000814400.1;Name=WP_000814400.1;gbkey=CDS;product=alkaline phosphatase;protein_id=WP_000814400.1;transl_table=11 NC_008258.1 RefSeq gene 365309 365629 . + . ID=gene388;Name=SFV_RS01940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01940;old_locus_tag=SFV_0347 NC_008258.1 Protein Homology CDS 365309 365629 . + 0 ID=cds381;Parent=gene388;Dbxref=Genbank:WP_001295332.1;Name=WP_001295332.1;gbkey=CDS;product=phosphate starvation-inducible protein PsiF;protein_id=WP_001295332.1;transl_table=11 NC_008258.1 RefSeq gene 365613 365714 . - . ID=gene389;Name=SFV_RS01945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01945 NC_008258.1 Protein Homology CDS 365613 365714 . - 0 ID=cds382;Parent=gene389;Dbxref=Genbank:WP_032333103.1;Name=WP_032333103.1;gbkey=CDS;product=transposase;protein_id=WP_032333103.1;transl_table=11 NC_008258.1 RefSeq repeat_region 365637 366948 . + . ID=id45;gbkey=repeat_region NC_008258.1 RefSeq region 365638 366947 . - . ID=id46;gbkey=mobile_element NC_008258.1 RefSeq gene 365680 366567 . - . ID=gene390;Name=SFV_RS01950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01950;old_locus_tag=SFV_0348 NC_008258.1 Protein Homology CDS 365680 366567 . - 0 ID=cds383;Parent=gene390;Dbxref=Genbank:WP_011310395.1;Name=WP_011310395.1;gbkey=CDS;product=transposase;protein_id=WP_011310395.1;transl_table=11 NC_008258.1 RefSeq gene 366567 366893 . - . ID=gene391;Name=SFV_RS01955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01955;old_locus_tag=SFV_0349 NC_008258.1 Protein Homology CDS 366567 366893 . - 0 ID=cds384;Parent=gene391;Dbxref=Genbank:WP_000165261.1;Name=WP_000165261.1;gbkey=CDS;product=transposase;protein_id=WP_000165261.1;transl_table=11 NC_008258.1 RefSeq gene 367044 368159 . + . ID=gene392;Name=adrA;gbkey=Gene;gene=adrA;gene_biotype=protein_coding;gene_synonym=yaiC;locus_tag=SFV_RS01960;old_locus_tag=SFV_0350 NC_008258.1 Protein Homology CDS 367044 368159 . + 0 ID=cds385;Parent=gene392;Dbxref=Genbank:WP_005105000.1;Name=WP_005105000.1;Note=catalyzes the conversion of 2 GTP into c-di-GMP%3B adrA overexpression induces cellulose biosynthesis%2C cell adherence to abiotic surfaces and swimming and swarming motility%3B AdrA acts post-transcriptionally on the bcsABZC operon activating cellulose biosynthesis;gbkey=CDS;gene=adrA;product=diguanylate cyclase;protein_id=WP_005105000.1;transl_table=11 NC_008258.1 RefSeq gene 368176 368985 . - . ID=gene393;Name=SFV_RS01965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01965;old_locus_tag=SFV_0351 NC_008258.1 Protein Homology CDS 368176 368985 . - 0 ID=cds386;Parent=gene393;Dbxref=Genbank:WP_005105002.1;Name=WP_005105002.1;Note=catalyzes the formation of L-proline from pyrroline-5-carboxylate;gbkey=CDS;product=pyrroline-5-carboxylate reductase;protein_id=WP_005105002.1;transl_table=11 NC_008258.1 RefSeq gene 369105 369563 . + . ID=gene394;Name=SFV_RS01970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01970 NC_008258.1 Protein Homology CDS 369105 369563 . + 0 ID=cds387;Parent=gene394;Dbxref=Genbank:WP_000158164.1;Name=WP_000158164.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000158164.1;transl_table=11 NC_008258.1 RefSeq gene 369746 370270 . + . ID=gene395;Name=aroL;gbkey=Gene;gene=aroL;gene_biotype=protein_coding;locus_tag=SFV_RS01975;old_locus_tag=SFV_0353 NC_008258.1 Protein Homology CDS 369746 370270 . + 0 ID=cds388;Parent=gene395;Dbxref=Genbank:WP_000193393.1;Name=WP_000193393.1;Note=type II enzyme similar to type I but differentially regulated and with a lower Km%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroL;product=shikimate kinase;protein_id=WP_000193393.1;transl_table=11 NC_008258.1 RefSeq gene 370320 370511 . + . ID=gene396;Name=SFV_RS01980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01980;old_locus_tag=SFV_0354 NC_008258.1 Protein Homology CDS 370320 370511 . + 0 ID=cds389;Parent=gene396;Dbxref=Genbank:WP_001142439.1;Name=WP_001142439.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001142439.1;transl_table=11 NC_008258.1 RefSeq gene 370542 370739 . + . ID=gene397;Name=SFV_RS01985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01985 NC_008258.1 Protein Homology CDS 370542 370739 . + 0 ID=cds390;Parent=gene397;Dbxref=Genbank:WP_032156938.1;Name=WP_032156938.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032156938.1;transl_table=11 NC_008258.1 RefSeq gene 370769 371446 . + . ID=gene398;Name=SFV_RS01990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01990;old_locus_tag=SFV_0355 NC_008258.1 Protein Homology CDS 370769 371446 . + 0 ID=cds391;Parent=gene398;Dbxref=Genbank:WP_001276415.1;Name=WP_001276415.1;gbkey=CDS;product=protein AroM;protein_id=WP_001276415.1;transl_table=11 NC_008258.1 RefSeq gene 371518 371802 . + . ID=gene399;Name=SFV_RS01995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS01995;old_locus_tag=SFV_0356 NC_008258.1 Protein Homology CDS 371518 371802 . + 0 ID=cds392;Parent=gene399;Dbxref=Genbank:WP_000941942.1;Name=WP_000941942.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000941942.1;transl_table=11 NC_008258.1 RefSeq gene 372011 372292 . + . ID=gene400;Name=SFV_RS02000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02000;old_locus_tag=SFV_0357 NC_008258.1 Protein Homology CDS 372011 372292 . + 0 ID=cds393;Parent=gene400;Dbxref=Genbank:WP_000942006.1;Name=WP_000942006.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000942006.1;transl_table=11 NC_008258.1 RefSeq gene 372289 372744 . + . ID=gene401;Name=SFV_RS02005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02005;old_locus_tag=SFV_0358 NC_008258.1 Protein Homology CDS 372289 372744 . + 0 ID=cds394;Parent=gene401;Dbxref=Genbank:WP_000194195.1;Name=WP_000194195.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000194195.1;transl_table=11 NC_008258.1 RefSeq gene 372822 373733 . - . ID=gene402;Name=SFV_RS02010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02010;old_locus_tag=SFV_0360 NC_008258.1 Protein Homology CDS 372822 373733 . - 0 ID=cds395;Parent=gene402;Dbxref=Genbank:WP_005053105.1;Name=WP_005053105.1;Note=Required for efficient pilin antigenic variation;gbkey=CDS;product=recombination-associated protein RdgC;protein_id=WP_005053105.1;transl_table=11 NC_008258.1 RefSeq gene 373858 374766 . + . ID=gene403;Name=SFV_RS02015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02015;old_locus_tag=SFV_0359 NC_008258.1 Protein Homology CDS 373858 374766 . + 0 ID=cds396;Parent=gene403;Dbxref=Genbank:WP_001219335.1;Name=WP_001219335.1;Note=catalyzes phosphorylation of fructose%3B cytosolic enzyme;gbkey=CDS;product=fructokinase;protein_id=WP_001219335.1;transl_table=11 NC_008258.1 RefSeq gene 374909 376090 . - . ID=gene404;Name=SFV_RS02020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02020;old_locus_tag=SFV_0361 NC_008258.1 Protein Homology CDS 374909 376090 . - 0 ID=cds397;Parent=gene404;Dbxref=Genbank:WP_005053102.1;Name=WP_005053102.1;Note=member of the major facilitator superfamily (MFS) of transporters%3B unknown function%3B may be associated with transport or processing of arabinose polymers;gbkey=CDS;product=MFS transporter;protein_id=WP_005053102.1;transl_table=11 NC_008258.1 RefSeq gene 376216 379359 . - . ID=gene405;Name=SFV_RS02025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02025;old_locus_tag=SFV_0362 NC_008258.1 Protein Homology CDS 376216 379359 . - 0 ID=cds398;Parent=gene405;Dbxref=Genbank:WP_000698944.1;Name=WP_000698944.1;Note=with SbcD cleaves DNA hairpin structures%3B also has 5' single-strand endonuclease activity;gbkey=CDS;product=exonuclease subunit SbcC;protein_id=WP_000698944.1;transl_table=11 NC_008258.1 RefSeq gene 379356 380558 . - . ID=gene406;Name=SFV_RS02030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02030;old_locus_tag=SFV_0363 NC_008258.1 Protein Homology CDS 379356 380558 . - 0 ID=cds399;Parent=gene406;Dbxref=Genbank:WP_001221307.1;Name=WP_001221307.1;Note=with SbcC cleaves DNA hairpin structure%2C also has 5' single-strand endonuclease activity;gbkey=CDS;product=exonuclease subunit SbcD;protein_id=WP_001221307.1;transl_table=11 NC_008258.1 RefSeq gene 380748 381437 . + . ID=gene407;Name=SFV_RS02035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02035;old_locus_tag=SFV_0364 NC_008258.1 Protein Homology CDS 380748 381437 . + 0 ID=cds400;Parent=gene407;Dbxref=Genbank:WP_000113938.1;Name=WP_000113938.1;Note=two component response regulator for the phosphate regulon%3B PhoR phosphorylates PhoB;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000113938.1;transl_table=11 NC_008258.1 RefSeq gene 381495 382790 . + . ID=gene408;Name=phoR;gbkey=Gene;gene=phoR;gene_biotype=protein_coding;locus_tag=SFV_RS02040;old_locus_tag=SFV_0365 NC_008258.1 Protein Homology CDS 381495 382790 . + 0 ID=cds401;Parent=gene408;Dbxref=Genbank:WP_000893611.1;Name=WP_000893611.1;Note=membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB;gbkey=CDS;gene=phoR;product=phosphate regulon sensor protein;protein_id=WP_000893611.1;transl_table=11 NC_008258.1 RefSeq gene 383197 384516 . + . ID=gene409;Name=SFV_RS02045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02045;old_locus_tag=SFV_0366 NC_008258.1 Protein Homology CDS 383197 384516 . + 0 ID=cds402;Parent=gene409;Dbxref=Genbank:WP_000149647.1;Name=WP_000149647.1;Note=sodium:branched-chain amino acid symporter;gbkey=CDS;product=branched-chain amino acid transporter 2 carrier protein BrnQ;protein_id=WP_000149647.1;transl_table=11 NC_008258.1 RefSeq gene 384592 385965 . + . ID=gene410;Name=proY;gbkey=Gene;gene=proY;gene_biotype=protein_coding;locus_tag=SFV_RS02050;old_locus_tag=SFV_0367 NC_008258.1 Protein Homology CDS 384592 385965 . + 0 ID=cds403;Parent=gene410;Dbxref=Genbank:WP_000444173.1;Name=WP_000444173.1;Note=cryptic permease that may be involved in the transport of proline across the inner membrane%3B in Salmonella typhimurium%2C the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation;gbkey=CDS;gene=proY;product=permease;protein_id=WP_000444173.1;transl_table=11 NC_008258.1 RefSeq gene 386121 387938 . + . ID=gene411;Name=SFV_RS02055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02055;old_locus_tag=SFV_0368 NC_008258.1 Protein Homology CDS 386121 387938 . + 0 ID=cds404;Parent=gene411;Dbxref=Genbank:WP_000979361.1;Name=WP_000979361.1;gbkey=CDS;product=maltodextrin glucosidase;protein_id=WP_000979361.1;transl_table=11 NC_008258.1 RefSeq gene 387943 388516 . - . ID=gene412;Name=SFV_RS02060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02060;pseudo=true NC_008258.1 Protein Homology CDS 387943 388516 . - 0 ID=cds405;Parent=gene412;Note=Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ACP phosphodiesterase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 388609 389679 . + . ID=gene413;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=SFV_RS02065;old_locus_tag=SFV_0370 NC_008258.1 Protein Homology CDS 388609 389679 . + 0 ID=cds406;Parent=gene413;Dbxref=Genbank:WP_001266503.1;Name=WP_001266503.1;Note=Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step;gbkey=CDS;gene=queA;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=WP_001266503.1;transl_table=11 NC_008258.1 RefSeq gene 389734 390861 . + . ID=gene414;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=SFV_RS02070;old_locus_tag=SFV_0371 NC_008258.1 Protein Homology CDS 389734 390861 . + 0 ID=cds407;Parent=gene414;Dbxref=Genbank:WP_000667315.1;Name=WP_000667315.1;Note=Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp%2C -Asn%2C -His and -Tyr);gbkey=CDS;gene=tgt;product=queuine tRNA-ribosyltransferase;protein_id=WP_000667315.1;transl_table=11 NC_008258.1 RefSeq gene 390884 391216 . + . ID=gene415;Name=yajC;gbkey=Gene;gene=yajC;gene_biotype=protein_coding;locus_tag=SFV_RS02075;old_locus_tag=SFV_0372 NC_008258.1 Protein Homology CDS 390884 391216 . + 0 ID=cds408;Parent=gene415;Dbxref=Genbank:WP_000007629.1;Name=WP_000007629.1;Note=member of preprotein translocase%3B forms a heterotrimer with SecD and SecF%3B links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex;gbkey=CDS;gene=yajC;product=preprotein translocase subunit YajC;protein_id=WP_000007629.1;transl_table=11 NC_008258.1 RefSeq gene 391244 393091 . + . ID=gene416;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=SFV_RS02080;old_locus_tag=SFV_0373 NC_008258.1 Protein Homology CDS 391244 393091 . + 0 ID=cds409;Parent=gene416;Dbxref=Genbank:WP_000934822.1;Name=WP_000934822.1;Note=part of the preprotein secretory system%3B when complexed with proteins SecF and YajC%2C SecDFyajC stimulates the proton motive force-driven protein translocation%2C and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane;gbkey=CDS;gene=secD;product=preprotein translocase subunit SecD;protein_id=WP_000934822.1;transl_table=11 NC_008258.1 RefSeq gene 393102 394073 . + . ID=gene417;Name=SFV_RS02085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02085;old_locus_tag=SFV_0374 NC_008258.1 Protein Homology CDS 393102 394073 . + 0 ID=cds410;Parent=gene417;Dbxref=Genbank:WP_000046642.1;Name=WP_000046642.1;gbkey=CDS;product=preprotein translocase subunit SecF;protein_id=WP_000046642.1;transl_table=11 NC_008258.1 RefSeq gene 394202 394549 . + . ID=gene418;Name=SFV_RS02090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02090;old_locus_tag=SFV_0375 NC_008258.1 Protein Homology CDS 394202 394549 . + 0 ID=cds411;Parent=gene418;Dbxref=Genbank:WP_000974813.1;Name=WP_000974813.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000974813.1;transl_table=11 NC_008258.1 RefSeq gene 394563 394685 . + . ID=gene419;Name=SFV_RS02095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02095 NC_008258.1 Protein Homology CDS 394563 394685 . + 0 ID=cds412;Parent=gene419;Dbxref=Genbank:WP_001326928.1;Name=WP_001326928.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326928.1;transl_table=11 NC_008258.1 RefSeq gene 394726 395610 . - . ID=gene420;Name=SFV_RS02100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02100;old_locus_tag=SFV_0376 NC_008258.1 Protein Homology CDS 394726 395610 . - 0 ID=cds413;Parent=gene420;Dbxref=Genbank:WP_001295328.1;Name=WP_001295328.1;Note=receptor of phage T6 and colicin K%3B involved in the transfer of deoxyribo- and ribo-nucleotides across the outer membrane;gbkey=CDS;product=nucleoside-specific channel-forming protein tsx;protein_id=WP_001295328.1;transl_table=11 NC_008258.1 RefSeq gene 395908 396447 . - . ID=gene421;Name=SFV_RS02105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02105;old_locus_tag=SFV_0377 NC_008258.1 Protein Homology CDS 395908 396447 . - 0 ID=cds414;Parent=gene421;Dbxref=Genbank:WP_024260229.1;Name=WP_024260229.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260229.1;transl_table=11 NC_008258.1 RefSeq gene 396598 397047 . + . ID=gene422;Name=SFV_RS02110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02110;old_locus_tag=SFV_0378 NC_008258.1 Protein Homology CDS 396598 397047 . + 0 ID=cds415;Parent=gene422;Dbxref=Genbank:WP_000543539.1;Name=WP_000543539.1;gbkey=CDS;product=NrdR family transcriptional regulator;protein_id=WP_000543539.1;transl_table=11 NC_008258.1 RefSeq gene 397051 398154 . + . ID=gene423;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=SFV_RS02115;old_locus_tag=SFV_0379 NC_008258.1 Protein Homology CDS 397051 398154 . + 0 ID=cds416;Parent=gene423;Dbxref=Genbank:WP_001150448.1;Name=WP_001150448.1;Note=riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway%3B catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil;gbkey=CDS;gene=ribD;product=diaminohydroxyphosphoribosylaminopyrimidine deaminase;protein_id=WP_001150448.1;transl_table=11 NC_008258.1 RefSeq gene 398243 398713 . + . ID=gene424;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=SFV_RS02120;old_locus_tag=SFV_0380 NC_008258.1 Protein Homology CDS 398243 398713 . + 0 ID=cds417;Parent=gene424;Dbxref=Genbank:WP_001021161.1;Name=WP_001021161.1;Note=RibE%3B 6%2C7-diimethyl-8-ribityllumazine synthase%3B DMRL synthase%3B lumazine synthase%3B beta subunit of riboflavin synthase%3B condenses 5-amino-6-(1'-D)-ribityl-amino-2%2C4(1H%2C3H)-pyrimidinedione with L-3%2C4-dihydrohy-2-butanone-4-phosphate to generate 6%2C6-dimethyl-8-lumazine (DMRL)%3B riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12)%3B involved in the last steps of riboflavin biosynthesis%3B forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli%3B in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not;gbkey=CDS;gene=ribH;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=WP_001021161.1;transl_table=11 NC_008258.1 RefSeq gene 398733 399152 . + . ID=gene425;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=SFV_RS02125;old_locus_tag=SFV_0381 NC_008258.1 Protein Homology CDS 398733 399152 . + 0 ID=cds418;Parent=gene425;Dbxref=Genbank:WP_000801125.1;Name=WP_000801125.1;Note=Regulates rRNA biosynthesis by transcriptional antitermination;gbkey=CDS;gene=nusB;product=transcription antitermination protein NusB;protein_id=WP_000801125.1;transl_table=11 NC_008258.1 RefSeq gene 399230 400207 . + . ID=gene426;Name=SFV_RS02130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02130;old_locus_tag=SFV_0382 NC_008258.1 Protein Homology CDS 399230 400207 . + 0 ID=cds419;Parent=gene426;Dbxref=Genbank:WP_000742110.1;Name=WP_000742110.1;Note=catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP;gbkey=CDS;product=thiamine monophosphate kinase;protein_id=WP_000742110.1;transl_table=11 NC_008258.1 RefSeq gene 400185 400703 . + . ID=gene427;Name=SFV_RS02135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02135;old_locus_tag=SFV_0383 NC_008258.1 Protein Homology CDS 400185 400703 . + 0 ID=cds420;Parent=gene427;Dbxref=Genbank:WP_000154148.1;Name=WP_000154148.1;Note=hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate;gbkey=CDS;product=phosphatidylglycerophosphatase A;protein_id=WP_000154148.1;transl_table=11 NC_008258.1 RefSeq gene 400757 401731 . - . ID=gene428;Name=SFV_RS02140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02140;old_locus_tag=SFV_0384 NC_008258.1 Protein Homology CDS 400757 401731 . - 0 ID=cds421;Parent=gene428;Dbxref=Genbank:WP_001199784.1;Name=WP_001199784.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_001199784.1;transl_table=11 NC_008258.1 RefSeq gene 401786 403648 . - . ID=gene429;Name=SFV_RS02145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02145;old_locus_tag=SFV_0385 NC_008258.1 Protein Homology CDS 401786 403648 . - 0 ID=cds422;Parent=gene429;Dbxref=Genbank:WP_000006824.1;Name=WP_000006824.1;Note=catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate;gbkey=CDS;product=1-deoxy-D-xylulose-5-phosphate synthase;protein_id=WP_000006824.1;transl_table=11 NC_008258.1 RefSeq gene 403673 404572 . - . ID=gene430;Name=SFV_RS02150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02150;old_locus_tag=SFV_0386 NC_008258.1 Protein Homology CDS 403673 404572 . - 0 ID=cds423;Parent=gene430;Dbxref=Genbank:WP_000347236.1;Name=WP_000347236.1;gbkey=CDS;product=geranyltranstransferase;protein_id=WP_000347236.1;transl_table=11 NC_008258.1 RefSeq gene 404572 404814 . - . ID=gene431;Name=SFV_RS02155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02155;old_locus_tag=SFV_0387 NC_008258.1 Protein Homology CDS 404572 404814 . - 0 ID=cds424;Parent=gene431;Dbxref=Genbank:WP_001124935.1;Name=WP_001124935.1;Note=catalyzes the bidirectional exonucleolytic cleavage of DNA;gbkey=CDS;product=exodeoxyribonuclease 7 small subunit;protein_id=WP_001124935.1;transl_table=11 NC_008258.1 RefSeq gene 405020 406468 . + . ID=gene432;Name=SFV_RS02160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02160;old_locus_tag=SFV_0388 NC_008258.1 Protein Homology CDS 405020 406468 . + 0 ID=cds425;Parent=gene432;Dbxref=Genbank:WP_000668704.1;Name=WP_000668704.1;Note=catalyzes the conversion of uridine to 4-thiouridinine tRNA%3B also required for the synthesis of the thiazole moiety;gbkey=CDS;product=tRNA sulfurtransferase;protein_id=WP_000668704.1;transl_table=11 NC_008258.1 RefSeq gene 406522 407112 . - . ID=gene433;Name=SFV_RS02165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02165;old_locus_tag=SFV_0389 NC_008258.1 Protein Homology CDS 406522 407112 . - 0 ID=cds426;Parent=gene433;Dbxref=Genbank:WP_001276335.1;Name=WP_001276335.1;gbkey=CDS;product=oxidative-stress-resistance chaperone;protein_id=WP_001276335.1;transl_table=11 NC_008258.1 RefSeq gene 407075 407986 . - . ID=gene434;Name=SFV_RS02170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02170;old_locus_tag=SFV_0390 NC_008258.1 Protein Homology CDS 407075 407986 . - 0 ID=cds427;Parent=gene434;Dbxref=Genbank:WP_000705865.1;Name=WP_000705865.1;Note=ketopantoate reductase%3B catalyzes the NADPH reduction of ketopantoate to pantoate%3B functions in pantothenate (vitamin B5) biosynthesis;gbkey=CDS;product=2-dehydropantoate 2-reductase;protein_id=WP_000705865.1;transl_table=11 NC_008258.1 RefSeq gene 408154 408645 . + . ID=gene435;Name=SFV_RS02175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02175;old_locus_tag=SFV_0391 NC_008258.1 Protein Homology CDS 408154 408645 . + 0 ID=cds428;Parent=gene435;Dbxref=Genbank:WP_001138904.1;Name=WP_001138904.1;Note=nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ%3B the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription;gbkey=CDS;product=nucleotide-binding protein;protein_id=WP_001138904.1;transl_table=11 NC_008258.1 RefSeq gene 408705 410435 . - . ID=gene436;Name=SFV_RS02180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02180;old_locus_tag=SFV_0392 NC_008258.1 Protein Homology CDS 408705 410435 . - 0 ID=cds429;Parent=gene436;Dbxref=Genbank:WP_000645011.1;Name=WP_000645011.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000645011.1;transl_table=11 NC_008258.1 RefSeq gene 410488 412641 . - . ID=gene437;Name=SFV_RS02185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02185;old_locus_tag=SFV_0393 NC_008258.1 Protein Homology CDS 410488 412641 . - 0 ID=cds430;Parent=gene437;Dbxref=Genbank:WP_000278325.1;Name=WP_000278325.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000278325.1;transl_table=11 NC_008258.1 RefSeq gene 412823 414193 . - . ID=gene438;Name=SFV_RS02190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02190;old_locus_tag=SFV_0394 NC_008258.1 Protein Homology CDS 412823 414193 . - 0 ID=cds431;Parent=gene438;Dbxref=Genbank:WP_001000961.1;Name=WP_001000961.1;gbkey=CDS;product=membrane protein;protein_id=WP_001000961.1;transl_table=11 NC_008258.1 RefSeq gene 414587 415861 . + . ID=gene439;Name=SFV_RS02195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02195;old_locus_tag=SFV_0395 NC_008258.1 Protein Homology CDS 414587 415861 . + 0 ID=cds432;Parent=gene439;Dbxref=Genbank:WP_005105027.1;Name=WP_005105027.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105027.1;transl_table=11 NC_008258.1 RefSeq gene 416098 417033 . + . ID=gene440;Name=SFV_RS02200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02200;old_locus_tag=SFV_0396 NC_008258.1 Protein Homology CDS 416098 417033 . + 0 ID=cds433;Parent=gene440;Dbxref=Genbank:WP_005105029.1;Name=WP_005105029.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105029.1;transl_table=11 NC_008258.1 RefSeq gene 417089 417520 . - . ID=gene441;Name=SFV_RS02205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02205;old_locus_tag=SFV_0397 NC_008258.1 Protein Homology CDS 417089 417520 . - 0 ID=cds434;Parent=gene441;Dbxref=Genbank:WP_005053057.1;Name=WP_005053057.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_005053057.1;transl_table=11 NC_008258.1 RefSeq gene 417480 417638 . - . ID=gene442;Name=SFV_RS02210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02210 NC_008258.1 Protein Homology CDS 417480 417638 . - 0 ID=cds435;Parent=gene442;Dbxref=Genbank:WP_005053055.1;Name=WP_005053055.1;gbkey=CDS;product=GNAT family acetyltransferase;protein_id=WP_005053055.1;transl_table=11 NC_008258.1 RefSeq gene 417622 417933 . - . ID=gene443;Name=SFV_RS02215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02215;old_locus_tag=SFV_0398 NC_008258.1 Protein Homology CDS 417622 417933 . - 0 ID=cds436;Parent=gene443;Dbxref=Genbank:WP_024260230.1;Name=WP_024260230.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260230.1;transl_table=11 NC_008258.1 RefSeq gene 418118 419005 . - . ID=gene444;Name=SFV_RS02220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02220;pseudo=true NC_008258.1 Protein Homology CDS 418118 419005 . - 0 ID=cds437;Parent=gene444;Note=converts protoheme IX and farnesyl diphosphate to heme O;gbkey=CDS;product=protoheme IX farnesyltransferase;pseudo=true;transl_except=(pos:complement(418538..418540)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 419020 419349 . - . ID=gene445;Name=SFV_RS02225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02225;old_locus_tag=SFV_0400 NC_008258.1 Protein Homology CDS 419020 419349 . - 0 ID=cds438;Parent=gene445;Dbxref=Genbank:WP_000019869.1;Name=WP_000019869.1;gbkey=CDS;product=cytochrome bo(3) ubiquinol oxidase subunit 4;protein_id=WP_000019869.1;transl_table=11 NC_008258.1 RefSeq gene 419349 419963 . - . ID=gene446;Name=SFV_RS02230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02230;old_locus_tag=SFV_0401 NC_008258.1 Protein Homology CDS 419349 419963 . - 0 ID=cds439;Parent=gene446;Dbxref=Genbank:WP_000179819.1;Name=WP_000179819.1;gbkey=CDS;product=cytochrome bo(3) ubiquinol oxidase subunit 3;protein_id=WP_000179819.1;transl_table=11 NC_008258.1 RefSeq gene 419953 421944 . - . ID=gene447;Name=SFV_RS02235;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02235;pseudo=true NC_008258.1 Protein Homology CDS 419953 421944 . - 0 ID=cds440;Parent=gene447;gbkey=CDS;product=cytochrome o ubiquinol oxidase subunit I;pseudo=true;transl_except=(pos:complement(421255..421257)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 421966 422463 . - . ID=gene448;Name=SFV_RS02240;end_range=422463,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02240;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 421966 422463 . - 0 ID=cds441;Parent=gene448;end_range=422463,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=cytochrome o ubiquinol oxidase subunit II;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 422463 424534 . + . ID=id47;gbkey=repeat_region NC_008258.1 RefSeq region 422464 423311 . + . ID=id48;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 422655 423308 . - . ID=gene449;Name=SFV_RS02250;end_range=423308,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02250;partial=true;pseudo=true;start_range=.,422655 NC_008258.1 Protein Homology CDS 422655 423308 . - 0 ID=cds442;Parent=gene449;end_range=423308,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,422655;transl_table=11 NC_008258.1 RefSeq gene 423278 423412 . - . ID=gene450;Name=SFV_RS02255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02255;old_locus_tag=SFV_0405 NC_008258.1 Protein Homology CDS 423278 423412 . - 0 ID=cds443;Parent=gene450;Dbxref=Genbank:WP_001058445.1;Name=WP_001058445.1;gbkey=CDS;product=transposase;protein_id=WP_001058445.1;transl_table=11 NC_008258.1 RefSeq region 423304 424532 . + . ID=id49;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 423432 423779 . - . ID=gene451;Name=SFV_RS02260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02260;old_locus_tag=SFV_0406 NC_008258.1 Protein Homology CDS 423432 423779 . - 0 ID=cds444;Parent=gene451;Dbxref=Genbank:WP_000631709.1;Name=WP_000631709.1;gbkey=CDS;product=transposase;protein_id=WP_000631709.1;transl_table=11 NC_008258.1 RefSeq gene 423776 424450 . - . ID=gene452;Name=SFV_RS02265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02265;old_locus_tag=SFV_0407 NC_008258.1 Protein Homology CDS 423776 424450 . - 0 ID=cds445;Parent=gene452;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq gene 424820 426295 . - . ID=gene453;Name=ampG;gbkey=Gene;gene=ampG;gene_biotype=protein_coding;locus_tag=SFV_RS02270;old_locus_tag=SFV_0408 NC_008258.1 Protein Homology CDS 424820 426295 . - 0 ID=cds446;Parent=gene453;Dbxref=Genbank:WP_000098438.1;Name=WP_000098438.1;Note=in Escherichia coli this protein is a permease involved in peptidoglycan recycling%3B member of major facilitator superfamily%3B MFS%3B inner membrane protein;gbkey=CDS;gene=ampG;product=AmpG family muropeptide MFS transporter;protein_id=WP_000098438.1;transl_table=11 NC_008258.1 RefSeq gene 426339 426917 . - . ID=gene454;Name=SFV_RS02275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02275;old_locus_tag=SFV_0409 NC_008258.1 Protein Homology CDS 426339 426917 . - 0 ID=cds447;Parent=gene454;Dbxref=Genbank:WP_001295326.1;Name=WP_001295326.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295326.1;transl_table=11 NC_008258.1 RefSeq gene 427222 427539 . + . ID=gene455;Name=SFV_RS02280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02280 NC_008258.1 Protein Homology CDS 427222 427539 . + 0 ID=cds448;Parent=gene455;Dbxref=Genbank:WP_000973448.1;Name=WP_000973448.1;Note=positive transcriptional regulator of morphogenetic pathway%3B controlling several genes involved in oxidative stress%2C acid stress%2C heat shock%2C osmotic shock%2C and carbon-starvation stress;gbkey=CDS;product=protein BolA;protein_id=WP_000973448.1;transl_table=11 NC_008258.1 RefSeq gene 427548 427736 . + . ID=gene456;Name=SFV_RS02285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02285 NC_008258.1 Protein Homology CDS 427548 427736 . + 0 ID=cds449;Parent=gene456;Dbxref=Genbank:WP_001177122.1;Name=WP_001177122.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001177122.1;transl_table=11 NC_008258.1 RefSeq gene 427883 429181 . + . ID=gene457;Name=SFV_RS02290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02290;old_locus_tag=SFV_0410 NC_008258.1 Protein Homology CDS 427883 429181 . + 0 ID=cds450;Parent=gene457;Dbxref=Genbank:WP_001198386.1;Name=WP_001198386.1;gbkey=CDS;product=trigger factor;protein_id=WP_001198386.1;transl_table=11 NC_008258.1 RefSeq gene 429428 430051 . + . ID=gene458;Name=SFV_RS02295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02295;old_locus_tag=SFV_0411 NC_008258.1 Protein Homology CDS 429428 430051 . + 0 ID=cds451;Parent=gene458;Dbxref=Genbank:WP_000122253.1;Name=WP_000122253.1;gbkey=CDS;product=ATP-dependent Clp protease proteolytic subunit;protein_id=WP_000122253.1;transl_table=11 NC_008258.1 RefSeq gene 430177 431451 . + . ID=gene459;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=SFV_RS02300;old_locus_tag=SFV_0412 NC_008258.1 Protein Homology CDS 430177 431451 . + 0 ID=cds452;Parent=gene459;Dbxref=Genbank:WP_000130305.1;Name=WP_000130305.1;Note=binds and unfolds substrates as part of the ClpXP protease;gbkey=CDS;gene=clpX;product=ATP-dependent Clp protease ATP-binding subunit ClpX;protein_id=WP_000130305.1;transl_table=11 NC_008258.1 RefSeq gene 431639 433993 . + . ID=gene460;Name=SFV_RS02305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02305;old_locus_tag=SFV_0413 NC_008258.1 Protein Homology CDS 431639 433993 . + 0 ID=cds453;Parent=gene460;Dbxref=Genbank:WP_005053030.1;Name=WP_005053030.1;gbkey=CDS;product=peptidase;protein_id=WP_005053030.1;transl_table=11 NC_008258.1 RefSeq gene 434202 434474 . + . ID=gene461;Name=SFV_RS02310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02310;old_locus_tag=SFV_0414 NC_008258.1 Protein Homology CDS 434202 434474 . + 0 ID=cds454;Parent=gene461;Dbxref=Genbank:WP_001043542.1;Name=WP_001043542.1;Note=histone-like DNA-binding protein;gbkey=CDS;product=DNA-binding protein HU-beta;protein_id=WP_001043542.1;transl_table=11 NC_008258.1 RefSeq gene 434666 436537 . + . ID=gene462;Name=SFV_RS02315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02315;old_locus_tag=SFV_0415 NC_008258.1 Protein Homology CDS 434666 436537 . + 0 ID=cds455;Parent=gene462;Dbxref=Genbank:WP_000969355.1;Name=WP_000969355.1;gbkey=CDS;product=folding chaperone;protein_id=WP_000969355.1;transl_table=11 NC_008258.1 RefSeq gene 436688 437059 . + . ID=gene463;Name=SFV_RS02320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02320;old_locus_tag=SFV_0416 NC_008258.1 Protein Homology CDS 436688 437059 . + 0 ID=cds456;Parent=gene463;Dbxref=Genbank:WP_000680312.1;Name=WP_000680312.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000680312.1;transl_table=11 NC_008258.1 RefSeq gene 437153 437551 . + . ID=gene464;Name=SFV_RS02325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02325;old_locus_tag=SFV_0417 NC_008258.1 Protein Homology CDS 437153 437551 . + 0 ID=cds457;Parent=gene464;Dbxref=Genbank:WP_001194534.1;Name=WP_001194534.1;gbkey=CDS;product=long-chain acyl-CoA thioesterase FadM;protein_id=WP_001194534.1;transl_table=11 NC_008258.1 RefSeq gene 437603 438298 . - . ID=gene465;Name=SFV_RS02330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02330;old_locus_tag=SFV_0418 NC_008258.1 Protein Homology CDS 437603 438298 . - 0 ID=cds458;Parent=gene465;Dbxref=Genbank:WP_000817216.1;Name=WP_000817216.1;Note=YbaX%3B catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0)%2C as one of the early reactions of quenosine biosynthesis%3B quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn%2C Asp%2C Tyr%2C and His;gbkey=CDS;product=7-cyano-7-deazaguanine synthase;protein_id=WP_000817216.1;transl_table=11 NC_008258.1 RefSeq gene 438363 439934 . - . ID=gene466;Name=SFV_RS02335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02335;old_locus_tag=SFV_0419 NC_008258.1 Protein Homology CDS 438363 439934 . - 0 ID=cds459;Parent=gene466;Dbxref=Genbank:WP_005053020.1;Name=WP_005053020.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005053020.1;transl_table=11 NC_008258.1 RefSeq gene 440155 440973 . + . ID=gene467;Name=SFV_RS02340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02340;old_locus_tag=SFV_0420 NC_008258.1 Protein Homology CDS 440155 440973 . + 0 ID=cds460;Parent=gene467;Dbxref=Genbank:WP_005053018.1;Name=WP_005053018.1;Note=HMP-PP phosphatase%3B catalyzes the hydrolysis of 4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate (HMP-PP) to 4-amino-2-methyl-5-hydroxymethylpyrimidine phosphate (HMP-P);gbkey=CDS;product=HMP-PP phosphatase;protein_id=WP_005053018.1;transl_table=11 NC_008258.1 RefSeq gene 441127 441585 . + . ID=gene468;Name=SFV_RS02345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02345;old_locus_tag=SFV_0421 NC_008258.1 Protein Homology CDS 441127 441585 . + 0 ID=cds461;Parent=gene468;Dbxref=Genbank:WP_000884590.1;Name=WP_000884590.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000884590.1;transl_table=11 NC_008258.1 RefSeq gene 441615 443387 . + . ID=gene469;Name=SFV_RS02350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02350;old_locus_tag=SFV_0422 NC_008258.1 Protein Homology CDS 441615 443387 . + 0 ID=cds462;Parent=gene469;Dbxref=Genbank:WP_001235580.1;Name=WP_001235580.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_001235580.1;transl_table=11 NC_008258.1 RefSeq gene 443380 445161 . + . ID=gene470;Name=SFV_RS02355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02355;old_locus_tag=SFV_0423 NC_008258.1 Protein Homology CDS 443380 445161 . + 0 ID=cds463;Parent=gene470;Dbxref=Genbank:WP_001256186.1;Name=WP_001256186.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_001256186.1;transl_table=11 NC_008258.1 RefSeq gene 445342 445680 . + . ID=gene471;Name=SFV_RS02360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02360 NC_008258.1 Protein Homology CDS 445342 445680 . + 0 ID=cds464;Parent=gene471;Dbxref=Genbank:WP_000780338.1;Name=WP_000780338.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 2;protein_id=WP_000780338.1;transl_table=11 NC_008258.1 RefSeq gene 445710 446996 . + . ID=gene472;Name=SFV_RS02365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02365;old_locus_tag=SFV_0425 NC_008258.1 Protein Homology CDS 445710 446996 . + 0 ID=cds465;Parent=gene472;Dbxref=Genbank:WP_000685036.1;Name=WP_000685036.1;gbkey=CDS;product=ammonium transporter;protein_id=WP_000685036.1;transl_table=11 NC_008258.1 RefSeq gene 447045 447905 . - . ID=gene473;Name=SFV_RS02370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02370;old_locus_tag=SFV_0426 NC_008258.1 Protein Homology CDS 447045 447905 . - 0 ID=cds466;Parent=gene473;Dbxref=Genbank:WP_000075874.1;Name=WP_000075874.1;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_000075874.1;transl_table=11 NC_008258.1 RefSeq gene 448123 448695 . + . ID=gene474;Name=SFV_RS02375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02375;old_locus_tag=SFV_0427 NC_008258.1 Protein Homology CDS 448123 448695 . + 0 ID=cds467;Parent=gene474;Dbxref=Genbank:WP_000779831.1;Name=WP_000779831.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000779831.1;transl_table=11 NC_008258.1 RefSeq repeat_region 448718 450152 . + . ID=id50;gbkey=repeat_region NC_008258.1 RefSeq region 448721 450148 . + . ID=id51;gbkey=mobile_element NC_008258.1 RefSeq gene 448806 450134 . + . ID=gene475;Name=SFV_RS02380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02380;old_locus_tag=SFV_0428 NC_008258.1 Protein Homology CDS 448806 450134 . + 0 ID=cds468;Parent=gene475;Dbxref=Genbank:WP_000547364.1;Name=WP_000547364.1;gbkey=CDS;product=transposase;protein_id=WP_000547364.1;transl_table=11 NC_008258.1 RefSeq gene 450164 450475 . - . ID=gene476;Name=SFV_RS02385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02385 NC_008258.1 Protein Homology CDS 450164 450475 . - 0 ID=cds469;Parent=gene476;Dbxref=Genbank:WP_000409911.1;Name=WP_000409911.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_000409911.1;transl_table=11 NC_008258.1 RefSeq gene 450854 451207 . + . ID=gene477;Name=SFV_RS02390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02390;old_locus_tag=SFV_0430 NC_008258.1 Protein Homology CDS 450854 451207 . + 0 ID=cds470;Parent=gene477;Dbxref=Genbank:WP_000878140.1;Name=WP_000878140.1;gbkey=CDS;product=DUF1428 domain-containing protein;protein_id=WP_000878140.1;transl_table=11 NC_008258.1 RefSeq gene 451249 452799 . - . ID=gene478;Name=SFV_RS02395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02395;old_locus_tag=SFV_0431 NC_008258.1 Protein Homology CDS 451249 452799 . - 0 ID=cds471;Parent=gene478;Dbxref=Genbank:WP_005066536.1;Name=WP_005066536.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005066536.1;transl_table=11 NC_008258.1 RefSeq gene 452963 453433 . - . ID=gene479;Name=SFV_RS02400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02400;old_locus_tag=SFV_0432 NC_008258.1 Protein Homology CDS 452963 453433 . - 0 ID=cds472;Parent=gene479;Dbxref=Genbank:WP_000136192.1;Name=WP_000136192.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000136192.1;transl_table=11 NC_008258.1 RefSeq gene 453549 454100 . - . ID=gene480;Name=SFV_RS02405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02405;old_locus_tag=SFV_0433 NC_008258.1 Protein Homology CDS 453549 454100 . - 0 ID=cds473;Parent=gene480;Dbxref=Genbank:WP_000102569.1;Name=WP_000102569.1;gbkey=CDS;product=maltose O-acetyltransferase;protein_id=WP_000102569.1;transl_table=11 NC_008258.1 RefSeq gene 454272 454490 . - . ID=gene481;Name=SFV_RS02410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02410 NC_008258.1 Protein Homology CDS 454272 454490 . - 0 ID=cds474;Parent=gene481;Dbxref=Genbank:WP_001291435.1;Name=WP_001291435.1;Note=with Hns involved in transcriptional regulation of hemolysin%3B non-specific DNA-binding protein which affects the production of multiple proteins;gbkey=CDS;product=hemolysin expression-modulating protein Hha;protein_id=WP_001291435.1;transl_table=11 NC_008258.1 RefSeq gene 454516 454890 . - . ID=gene482;Name=SFV_RS02415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02415;old_locus_tag=SFV_0434 NC_008258.1 Protein Homology CDS 454516 454890 . - 0 ID=cds475;Parent=gene482;Dbxref=Genbank:WP_000344797.1;Name=WP_000344797.1;gbkey=CDS;product=Hha toxicity attenuator;protein_id=WP_000344797.1;transl_table=11 NC_008258.1 RefSeq gene 455436 458585 . - . ID=gene483;Name=SFV_RS02420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02420;old_locus_tag=SFV_0435 NC_008258.1 Protein Homology CDS 455436 458585 . - 0 ID=cds476;Parent=gene483;Dbxref=Genbank:WP_001132471.1;Name=WP_001132471.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_001132471.1;transl_table=11 NC_008258.1 RefSeq gene 458608 459801 . - . ID=gene484;Name=SFV_RS02425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02425;old_locus_tag=SFV_0436 NC_008258.1 Protein Homology CDS 458608 459801 . - 0 ID=cds477;Parent=gene484;Dbxref=Genbank:WP_024260231.1;Name=WP_024260231.1;Note=with AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics;gbkey=CDS;product=MexE family multidrug efflux RND transporter periplasmic adaptor subunit;protein_id=WP_024260231.1;transl_table=11 NC_008258.1 RefSeq gene 459943 460590 . + . ID=gene485;Name=SFV_RS02430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02430;old_locus_tag=SFV_0437 NC_008258.1 Protein Homology CDS 459943 460590 . + 0 ID=cds478;Parent=gene485;Dbxref=Genbank:WP_000101737.1;Name=WP_000101737.1;Note=regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000101737.1;transl_table=11 NC_008258.1 RefSeq gene 460718 464080 . + . ID=gene486;Name=SFV_RS02435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02435;old_locus_tag=SFV_0438 NC_008258.1 Protein Homology CDS 460718 464080 . + 0 ID=cds479;Parent=gene486;Dbxref=Genbank:WP_000177726.1;Name=WP_000177726.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000177726.1;transl_table=11 NC_008258.1 RefSeq gene 464115 464258 . - . ID=gene487;Name=SFV_RS02440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02440 NC_008258.1 Protein Homology CDS 464115 464258 . - 0 ID=cds480;Parent=gene487;Dbxref=Genbank:WP_032140245.1;Name=WP_032140245.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032140245.1;transl_table=11 NC_008258.1 RefSeq gene 464292 464453 . - . ID=gene488;Name=SFV_RS02445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02445;old_locus_tag=SFV_0439 NC_008258.1 Protein Homology CDS 464292 464453 . - 0 ID=cds481;Parent=gene488;Dbxref=Genbank:WP_000051152.1;Name=WP_000051152.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000051152.1;transl_table=11 NC_008258.1 RefSeq gene 464467 464994 . - . ID=gene489;Name=SFV_RS02450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02450;old_locus_tag=SFV_0440 NC_008258.1 Protein Homology CDS 464467 464994 . - 0 ID=cds482;Parent=gene489;Dbxref=Genbank:WP_000844881.1;Name=WP_000844881.1;Note=PriC%3B protein involved in DNA replication%3B part of the primosome%2C a protein complex required to restart stalled replication forks%3B binds the complex formed by PriA%2C PriB and DNA%3B PriC-dependent primosome requires a gap to restart DNA replication%3B stimulates Rep activity at stalled forks;gbkey=CDS;product=primosomal replication protein N'';protein_id=WP_000844881.1;transl_table=11 NC_008258.1 RefSeq gene 465064 465441 . + . ID=gene490;Name=SFV_RS02455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02455;old_locus_tag=SFV_0441 NC_008258.1 Protein Homology CDS 465064 465441 . + 0 ID=cds483;Parent=gene490;Dbxref=Genbank:WP_001188905.1;Name=WP_001188905.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001188905.1;transl_table=11 NC_008258.1 RefSeq gene 465594 466145 . + . ID=gene491;Name=SFV_RS02460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02460;old_locus_tag=SFV_0442 NC_008258.1 Protein Homology CDS 465594 466145 . + 0 ID=cds484;Parent=gene491;Dbxref=Genbank:WP_005052987.1;Name=WP_005052987.1;Note=catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis;gbkey=CDS;product=adenine phosphoribosyltransferase;protein_id=WP_005052987.1;transl_table=11 NC_008258.1 RefSeq gene 466274 468199 . + . ID=gene492;Name=SFV_RS02465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02465;old_locus_tag=SFV_0443 NC_008258.1 Protein Homology CDS 466274 468199 . + 0 ID=cds485;Parent=gene492;Dbxref=Genbank:WP_000122039.1;Name=WP_000122039.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the tau chain serves as a scaffold to help in the dimerizaton of the alpha%2Cepsilon and theta core complex%3B the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit gamma/tau;protein_id=WP_000122039.1;transl_table=11 NC_008258.1 RefSeq gene 468252 468581 . + . ID=gene493;Name=SFV_RS02470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02470;old_locus_tag=SFV_0444 NC_008258.1 Protein Homology CDS 468252 468581 . + 0 ID=cds486;Parent=gene493;Dbxref=Genbank:WP_000467098.1;Name=WP_000467098.1;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_000467098.1;transl_table=11 NC_008258.1 RefSeq gene 468581 469186 . + . ID=gene494;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=SFV_RS02475;old_locus_tag=SFV_0445 NC_008258.1 Protein Homology CDS 468581 469186 . + 0 ID=cds487;Parent=gene494;Dbxref=Genbank:WP_001195025.1;Name=WP_001195025.1;Note=involved in a recombinational process of DNA repair%2C independent of the recBC complex;gbkey=CDS;gene=recR;product=recombination protein RecR;protein_id=WP_001195025.1;transl_table=11 NC_008258.1 RefSeq gene 469296 471169 . + . ID=gene495;Name=SFV_RS02480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02480;pseudo=true NC_008258.1 Protein Homology CDS 469296 471169 . + 0 ID=cds488;Parent=gene495;Note=molecular chaperone;exception=annotated by transcript or proteomic data;gbkey=CDS;product=heat-shock protein Hsp90;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 471350 471994 . + . ID=gene496;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=SFV_RS02485;old_locus_tag=SFV_0447 NC_008258.1 Protein Homology CDS 471350 471994 . + 0 ID=cds489;Parent=gene496;Dbxref=Genbank:WP_001220233.1;Name=WP_001220233.1;Note=essential enzyme that recycles AMP in active cells%3B converts ATP and AMP to two molecules of ADP;gbkey=CDS;gene=adk;product=adenylate kinase;protein_id=WP_001220233.1;transl_table=11 NC_008258.1 RefSeq gene 472126 473088 . + . ID=gene497;Name=SFV_RS02490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02490;old_locus_tag=SFV_0448 NC_008258.1 Protein Homology CDS 472126 473088 . + 0 ID=cds490;Parent=gene497;Dbxref=Genbank:WP_001250094.1;Name=WP_001250094.1;gbkey=CDS;product=ferrochelatase;protein_id=WP_001250094.1;transl_table=11 NC_008258.1 RefSeq gene 473085 474044 . - . ID=gene498;Name=SFV_RS02495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02495;old_locus_tag=SFV_0449 NC_008258.1 Protein Homology CDS 473085 474044 . - 0 ID=cds491;Parent=gene498;Dbxref=Genbank:WP_000801839.1;Name=WP_000801839.1;gbkey=CDS;product=acetyl esterase;protein_id=WP_000801839.1;transl_table=11 NC_008258.1 RefSeq gene 474196 475500 . + . ID=gene499;Name=SFV_RS02500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02500;old_locus_tag=SFV_0450 NC_008258.1 Protein Homology CDS 474196 475500 . + 0 ID=cds492;Parent=gene499;Dbxref=Genbank:WP_000671585.1;Name=WP_000671585.1;Note=catalyzes the formation of inosine/guanosine monophosphate from inosine or guanosine and ATP;gbkey=CDS;product=inosine/guanosine kinase;protein_id=WP_000671585.1;transl_table=11 NC_008258.1 RefSeq gene 475633 477309 . - . ID=gene500;Name=SFV_RS02505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02505;old_locus_tag=SFV_0451 NC_008258.1 Protein Homology CDS 475633 477309 . - 0 ID=cds493;Parent=gene500;Dbxref=Genbank:WP_000546255.1;Name=WP_000546255.1;Note=YbaL%3B member of the CPA-2 family of antiporters%3B uncharacterized protein;gbkey=CDS;product=cation:proton antiport protein;protein_id=WP_000546255.1;transl_table=11 NC_008258.1 RefSeq gene 477547 478767 . - . ID=gene501;Name=SFV_RS02510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02510;old_locus_tag=SFV_0452 NC_008258.1 Protein Homology CDS 477547 478767 . - 0 ID=cds494;Parent=gene501;Dbxref=Genbank:WP_001251640.1;Name=WP_001251640.1;gbkey=CDS;product=fosmidomycin resistance protein;protein_id=WP_001251640.1;transl_table=11 NC_008258.1 RefSeq gene 478985 480636 . + . ID=gene502;Name=ushA;gbkey=Gene;gene=ushA;gene_biotype=pseudogene;locus_tag=SFV_RS02515;pseudo=true NC_008258.1 Protein Homology CDS 478985 480636 . + 0 ID=cds495;Parent=gene502;Note=catalyzes the degradation of periplasmic UDP-glucose to uridine%2C glucose-1-phosphate and inorganic phosphate%3B specific for uridine nucleotides;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=ushA;product=5'-nucleotidase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 480673 481152 . - . ID=gene503;Name=SFV_RS02520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02520;old_locus_tag=SFV_0454 NC_008258.1 Protein Homology CDS 480673 481152 . - 0 ID=cds496;Parent=gene503;Dbxref=Genbank:WP_000186631.1;Name=WP_000186631.1;gbkey=CDS;product=cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK;protein_id=WP_000186631.1;transl_table=11 NC_008258.1 RefSeq gene 481356 482150 . - . ID=gene504;Name=SFV_RS02525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02525;old_locus_tag=SFV_0455 NC_008258.1 Protein Homology CDS 481356 482150 . - 0 ID=cds497;Parent=gene504;Dbxref=Genbank:WP_000365173.1;Name=WP_000365173.1;gbkey=CDS;product=TraB family protein;protein_id=WP_000365173.1;transl_table=11 NC_008258.1 RefSeq gene 482288 482629 . + . ID=gene505;Name=SFV_RS02530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02530;old_locus_tag=SFV_0456 NC_008258.1 Protein Homology CDS 482288 482629 . + 0 ID=cds498;Parent=gene505;Dbxref=Genbank:WP_005066557.1;Name=WP_005066557.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_005066557.1;transl_table=11 NC_008258.1 RefSeq gene 482844 485348 . - . ID=gene506;Name=copA;gbkey=Gene;gene=copA;gene_biotype=protein_coding;locus_tag=SFV_RS02535;old_locus_tag=SFV_0457 NC_008258.1 Protein Homology CDS 482844 485348 . - 0 ID=cds499;Parent=gene506;Dbxref=Genbank:WP_000083889.1;Name=WP_000083889.1;gbkey=CDS;gene=copA;product=copper exporting ATPase;protein_id=WP_000083889.1;transl_table=11 NC_008258.1 RefSeq gene 485610 486542 . + . ID=gene507;Name=SFV_RS02540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02540;old_locus_tag=SFV_0458 NC_008258.1 Protein Homology CDS 485610 486542 . + 0 ID=cds500;Parent=gene507;Dbxref=Genbank:WP_000883028.1;Name=WP_000883028.1;Note=catalyzes the formation of glutamate from glutamine;gbkey=CDS;product=glutaminase 1;protein_id=WP_000883028.1;transl_table=11 NC_008258.1 RefSeq gene 486545 487837 . + . ID=gene508;Name=SFV_RS02545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02545;old_locus_tag=SFV_0459 NC_008258.1 Protein Homology CDS 486545 487837 . + 0 ID=cds501;Parent=gene508;Dbxref=Genbank:WP_000982149.1;Name=WP_000982149.1;gbkey=CDS;product=amino acid permease;protein_id=WP_000982149.1;transl_table=11 NC_008258.1 RefSeq gene 487962 488368 . + . ID=gene509;Name=SFV_RS02550;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02550;old_locus_tag=SFV_0460;pseudo=true NC_008258.1 Protein Homology CDS 487962 488368 . + 0 ID=cds502;Parent=gene509;Note=activator of copper-responsive regulon genes;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 488369 488827 . - . ID=gene510;Name=SFV_RS02555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02555;old_locus_tag=SFV_0461 NC_008258.1 Protein Homology CDS 488369 488827 . - 0 ID=cds503;Parent=gene510;Dbxref=Genbank:WP_000970323.1;Name=WP_000970323.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000970323.1;transl_table=11 NC_008258.1 RefSeq gene 488824 489741 . - . ID=gene511;Name=SFV_RS02560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02560;old_locus_tag=SFV_0462 NC_008258.1 Protein Homology CDS 488824 489741 . - 0 ID=cds504;Parent=gene511;Dbxref=Genbank:WP_000904502.1;Name=WP_000904502.1;gbkey=CDS;product=protein QmcA;protein_id=WP_000904502.1;transl_table=11 NC_008258.1 RefSeq gene 489887 490564 . + . ID=gene512;Name=SFV_RS02565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02565;old_locus_tag=SFV_0463 NC_008258.1 Protein Homology CDS 489887 490564 . + 0 ID=cds505;Parent=gene512;Dbxref=Genbank:WP_001157548.1;Name=WP_001157548.1;gbkey=CDS;product=putrescine/spermidine ABC transporter ATP-binding protein;protein_id=WP_001157548.1;transl_table=11 NC_008258.1 RefSeq gene 490551 491330 . + . ID=gene513;Name=SFV_RS02570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02570;old_locus_tag=SFV_0464 NC_008258.1 Protein Homology CDS 490551 491330 . + 0 ID=cds506;Parent=gene513;Dbxref=Genbank:WP_005052963.1;Name=WP_005052963.1;gbkey=CDS;product=iron export permease FetB;protein_id=WP_005052963.1;transl_table=11 NC_008258.1 RefSeq gene 491393 492247 . - . ID=gene514;Name=SFV_RS02575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02575;old_locus_tag=SFV_0465 NC_008258.1 Protein Homology CDS 491393 492247 . - 0 ID=cds507;Parent=gene514;Dbxref=Genbank:WP_005052961.1;Name=WP_005052961.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052961.1;transl_table=11 NC_008258.1 RefSeq gene 492308 493078 . - . ID=gene515;Name=SFV_RS02580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02580;old_locus_tag=SFV_0466 NC_008258.1 Protein Homology CDS 492308 493078 . - 0 ID=cds508;Parent=gene515;Dbxref=Genbank:WP_005052959.1;Name=WP_005052959.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_005052959.1;transl_table=11 NC_008258.1 RefSeq gene 493107 493729 . - . ID=gene516;Name=SFV_RS02585;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02585;pseudo=true NC_008258.1 Protein Homology CDS 493107 493729 . - 0 ID=cds509;Parent=gene516;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acyl-CoA thioesterase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 493700 494302 . + . ID=gene517;Name=SFV_RS02590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02590;old_locus_tag=SFV_0467 NC_008258.1 Protein Homology CDS 493700 494302 . + 0 ID=cds510;Parent=gene517;Dbxref=Genbank:WP_001110583.1;Name=WP_001110583.1;gbkey=CDS;product=phosphonate ABC transporter ATP-binding protein;protein_id=WP_001110583.1;transl_table=11 NC_008258.1 RefSeq gene 494299 496713 . + . ID=gene518;Name=SFV_RS02595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02595;old_locus_tag=SFV_0469 NC_008258.1 Protein Homology CDS 494299 496713 . + 0 ID=cds511;Parent=gene518;Dbxref=Genbank:WP_000561817.1;Name=WP_000561817.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_000561817.1;transl_table=11 NC_008258.1 RefSeq gene 497425 498519 . - . ID=gene519;Name=SFV_RS02600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02600;old_locus_tag=SFV_0470 NC_008258.1 Protein Homology CDS 497425 498519 . - 0 ID=cds512;Parent=gene519;Dbxref=Genbank:WP_001157939.1;Name=WP_001157939.1;Note=catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA;gbkey=CDS;product=tRNA 2-selenouridine synthase;protein_id=WP_001157939.1;transl_table=11 NC_008258.1 RefSeq gene 498588 499514 . - . ID=gene520;Name=SFV_RS02605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02605;old_locus_tag=SFV_0471 NC_008258.1 Protein Homology CDS 498588 499514 . - 0 ID=cds513;Parent=gene520;Dbxref=Genbank:WP_000460143.1;Name=WP_000460143.1;Note=activator of the allDC-ylbA operon involved in allantoin utilization;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000460143.1;transl_table=11 NC_008258.1 RefSeq gene 499744 500226 . + . ID=gene521;Name=SFV_RS02610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02610;old_locus_tag=SFV_0472 NC_008258.1 Protein Homology CDS 499744 500226 . + 0 ID=cds514;Parent=gene521;Dbxref=Genbank:WP_000776388.1;Name=WP_000776388.1;gbkey=CDS;product=ureidoglycolate lyase;protein_id=WP_000776388.1;transl_table=11 NC_008258.1 RefSeq gene 500304 501119 . + . ID=gene522;Name=SFV_RS02615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02615;old_locus_tag=SFV_0473 NC_008258.1 Protein Homology CDS 500304 501119 . + 0 ID=cds515;Parent=gene522;Dbxref=Genbank:WP_000141273.1;Name=WP_000141273.1;Note=regulates operons involved in the utilization of allantoin;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_000141273.1;transl_table=11 NC_008258.1 RefSeq gene 501209 502984 . + . ID=gene523;Name=SFV_RS02620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02620;old_locus_tag=SFV_0474 NC_008258.1 Protein Homology CDS 501209 502984 . + 0 ID=cds516;Parent=gene523;Dbxref=Genbank:WP_024260232.1;Name=WP_024260232.1;Note=catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate;gbkey=CDS;product=glyoxylate carboligase;protein_id=WP_024260232.1;transl_table=11 NC_008258.1 RefSeq gene 502997 503278 . + . ID=gene524;Name=SFV_RS02625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02625 NC_008258.1 Protein Homology CDS 502997 503278 . + 0 ID=cds517;Parent=gene524;Dbxref=Genbank:WP_005052945.1;Name=WP_005052945.1;gbkey=CDS;product=hydroxypyruvate isomerase;protein_id=WP_005052945.1;transl_table=11 NC_008258.1 RefSeq repeat_region 503271 504045 . + . ID=id52;gbkey=repeat_region NC_008258.1 RefSeq region 503274 504041 . - . ID=id53;gbkey=mobile_element NC_008258.1 RefSeq gene 503289 503684 . - . ID=gene525;Name=SFV_RS02630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02630 NC_008258.1 Protein Homology CDS 503289 503684 . - 0 ID=cds518;Parent=gene525;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 503711 503935 . - . ID=gene526;Name=SFV_RS02635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02635 NC_008258.1 Protein Homology CDS 503711 503935 . - 0 ID=cds519;Parent=gene526;Dbxref=Genbank:WP_001243697.1;Name=WP_001243697.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001243697.1;transl_table=11 NC_008258.1 RefSeq gene 504036 504686 . - . ID=gene527;Name=SFV_RS02640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02640;old_locus_tag=SFV_0476;partial=true;pseudo=true;start_range=.,504036 NC_008258.1 Protein Homology CDS 504036 504686 . - 0 ID=cds520;Parent=gene527;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,504036;transl_table=11 NC_008258.1 RefSeq gene 504697 505929 . - . ID=gene528;Name=SFV_RS02645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02645;old_locus_tag=SFV_0477 NC_008258.1 Protein Homology CDS 504697 505929 . - 0 ID=cds521;Parent=gene528;Dbxref=Genbank:WP_024260233.1;Name=WP_024260233.1;gbkey=CDS;product=allantoate amidohydrolase;protein_id=WP_024260233.1;transl_table=11 NC_008258.1 RefSeq gene 505932 506579 . + . ID=gene529;Name=SFV_RS02650;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02650;old_locus_tag=SFV_0478;partial=true;pseudo=true;start_range=.,505932 NC_008258.1 Protein Homology CDS 505932 506579 . + 0 ID=cds522;Parent=gene529;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,505932;transl_table=11 NC_008258.1 RefSeq gene 506576 507469 . + . ID=gene530;Name=SFV_RS02655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02655;old_locus_tag=SFV_0479 NC_008258.1 Protein Homology CDS 506576 507469 . + 0 ID=cds523;Parent=gene530;Dbxref=Genbank:WP_000855389.1;Name=WP_000855389.1;Note=reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP;gbkey=CDS;product=carbamate kinase;protein_id=WP_000855389.1;transl_table=11 NC_008258.1 RefSeq gene 507606 508673 . - . ID=gene531;Name=SFV_RS02660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02660;old_locus_tag=SFV_0480 NC_008258.1 Protein Homology CDS 507606 508673 . - 0 ID=cds524;Parent=gene531;Dbxref=Genbank:WP_000815547.1;Name=WP_000815547.1;gbkey=CDS;product=phosphoribosylaminoimidazole carboxylase;protein_id=WP_000815547.1;transl_table=11 NC_008258.1 RefSeq gene 508670 509179 . - . ID=gene532;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=SFV_RS02665;old_locus_tag=SFV_0481 NC_008258.1 Protein Homology CDS 508670 509179 . - 0 ID=cds525;Parent=gene532;Dbxref=Genbank:WP_005052935.1;Name=WP_005052935.1;Note=catalyzes the formation of 4-carboxy-5-aminoimidazole ribonucleotide from N5-carboxyaminoimidazole ribonucleotide;gbkey=CDS;gene=purE;product=N5-carboxyaminoimidazole ribonucleotide mutase;protein_id=WP_005052935.1;transl_table=11 NC_008258.1 RefSeq gene 509297 510019 . - . ID=gene533;Name=SFV_RS02670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02670;old_locus_tag=SFV_0482 NC_008258.1 Protein Homology CDS 509297 510019 . - 0 ID=cds526;Parent=gene533;Dbxref=Genbank:WP_000212252.1;Name=WP_000212252.1;Note=catalyzes the formation of 2%2C3%3Ddiacylglucosamine 1-phosphate from UDP-2%2C3%3Ddiacylglucosamine;gbkey=CDS;product=UDP-2%2C3-diacylglucosamine hydrolase;protein_id=WP_000212252.1;transl_table=11 NC_008258.1 RefSeq gene 510022 510516 . - . ID=gene534;Name=SFV_RS02675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02675;old_locus_tag=SFV_0483 NC_008258.1 Protein Homology CDS 510022 510516 . - 0 ID=cds527;Parent=gene534;Dbxref=Genbank:WP_000255996.1;Name=WP_000255996.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000255996.1;transl_table=11 NC_008258.1 RefSeq gene 510690 512075 . + . ID=gene535;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=SFV_RS02680;old_locus_tag=SFV_0484 NC_008258.1 Protein Homology CDS 510690 512075 . + 0 ID=cds528;Parent=gene535;Dbxref=Genbank:WP_000912345.1;Name=WP_000912345.1;Note=catalyzes a two-step reaction%3B charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA;gbkey=CDS;gene=cysS;product=cysteine--tRNA ligase;protein_id=WP_000912345.1;transl_table=11 NC_008258.1 RefSeq gene 512111 512620 . - . ID=gene536;Name=SFV_RS02685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02685;old_locus_tag=SFV_0485 NC_008258.1 Protein Homology CDS 512111 512620 . - 0 ID=cds529;Parent=gene536;Dbxref=Genbank:WP_001143523.1;Name=WP_001143523.1;gbkey=CDS;product=membrane protein;protein_id=WP_001143523.1;transl_table=11 NC_008258.1 RefSeq gene 512728 512940 . - . ID=gene537;Name=SFV_RS02690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02690;old_locus_tag=SFV_0486 NC_008258.1 Protein Homology CDS 512728 512940 . - 0 ID=cds530;Parent=gene537;Dbxref=Genbank:WP_000190288.1;Name=WP_000190288.1;gbkey=CDS;product=ribosome-associated protein;protein_id=WP_000190288.1;transl_table=11 NC_008258.1 RefSeq gene 512942 513808 . - . ID=gene538;Name=SFV_RS02695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02695;old_locus_tag=SFV_0487 NC_008258.1 Protein Homology CDS 512942 513808 . - 0 ID=cds531;Parent=gene538;Dbxref=Genbank:WP_000729155.1;Name=WP_000729155.1;gbkey=CDS;product=bifunctional protein FolD;protein_id=WP_000729155.1;transl_table=11 NC_008258.1 RefSeq gene 514289 514813 . + . ID=gene539;Name=SFV_RS02700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02700;old_locus_tag=SFV_0488 NC_008258.1 Protein Homology CDS 514289 514813 . + 0 ID=cds532;Parent=gene539;Dbxref=Genbank:WP_005105080.1;Name=WP_005105080.1;gbkey=CDS;product=type-1 fimbrial protein subunit A;protein_id=WP_005105080.1;transl_table=11 NC_008258.1 RefSeq gene 515033 515643 . + . ID=gene540;Name=SFV_RS02705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02705;pseudo=true NC_008258.1 Protein Homology CDS 515033 515643 . + 0 ID=cds533;Parent=gene540;exception=annotated by transcript or proteomic data;gbkey=CDS;product=molecular chaperone;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 515674 516192 . + . ID=gene541;Name=SFV_RS02710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02710 NC_008258.1 Protein Homology CDS 515674 516192 . + 0 ID=cds534;Parent=gene541;Dbxref=Genbank:WP_000701358.1;Name=WP_000701358.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000701358.1;transl_table=11 NC_008258.1 RefSeq repeat_region 516169 516940 . + . ID=id54;gbkey=repeat_region NC_008258.1 RefSeq region 516171 516938 . - . ID=id55;gbkey=mobile_element NC_008258.1 RefSeq gene 516186 516563 . - . ID=gene542;Name=SFV_RS02715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02715 NC_008258.1 Protein Homology CDS 516186 516563 . - 0 ID=cds535;Parent=gene542;Dbxref=Genbank:WP_005099987.1;Name=WP_005099987.1;gbkey=CDS;product=transposase;protein_id=WP_005099987.1;transl_table=11 NC_008258.1 RefSeq gene 516608 516832 . - . ID=gene543;Name=SFV_RS02720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02720 NC_008258.1 Protein Homology CDS 516608 516832 . - 0 ID=cds536;Parent=gene543;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 516939 518045 . + . ID=gene544;Name=SFV_RS02725;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02725;partial=true;pseudo=true;start_range=.,516939 NC_008258.1 Protein Homology CDS 516939 518045 . + 0 ID=cds537;Parent=gene544;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=fimbrial protein;pseudo=true;start_range=.,516939;transl_table=11 NC_008258.1 RefSeq gene 518058 519065 . + . ID=gene545;Name=fimH;gbkey=Gene;gene=fimH;gene_biotype=pseudogene;locus_tag=SFV_RS02730;pseudo=true NC_008258.1 Protein Homology CDS 518058 519065 . + 0 ID=cds538;Parent=gene545;Note=involved in the regulation of fimbriae length and mediates adhesion of type 1 fimbriae;gbkey=CDS;gene=fimH;product=adhesin;pseudo=true;transl_except=(pos:518844..518846%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 519076 519591 . + . ID=gene546;Name=SFV_RS02735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02735;old_locus_tag=SFV_0494 NC_008258.1 Protein Homology CDS 519076 519591 . + 0 ID=cds539;Parent=gene546;Dbxref=Genbank:WP_005105085.1;Name=WP_005105085.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_005105085.1;transl_table=11 NC_008258.1 RefSeq repeat_region 519627 520962 . + . ID=id56;gbkey=repeat_region NC_008258.1 RefSeq region 519630 520960 . - . ID=id57;gbkey=mobile_element NC_008258.1 RefSeq gene 519641 520546 . - . ID=gene547;Name=SFV_RS02740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02740;old_locus_tag=SFV_0495 NC_008258.1 Protein Homology CDS 519641 520546 . - 0 ID=cds540;Parent=gene547;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 520504 520869 . - . ID=gene548;Name=SFV_RS02745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02745;old_locus_tag=SFV_0496 NC_008258.1 Protein Homology CDS 520504 520869 . - 0 ID=cds541;Parent=gene548;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 520945 521562 . - . ID=gene549;Name=SFV_RS02750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02750;old_locus_tag=SFV_0497 NC_008258.1 Protein Homology CDS 520945 521562 . - 0 ID=cds542;Parent=gene549;Dbxref=Genbank:WP_000805417.1;Name=WP_000805417.1;Note=activates the production of the major fimbrae protein FimA;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000805417.1;transl_table=11 NC_008258.1 RefSeq gene 521805 521881 . + . ID=gene550;Name=SFV_RS02755;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS02755;old_locus_tag=SFV_0498 NC_008258.1 tRNAscan-SE tRNA 521805 521881 . + . ID=rna7;Parent=gene550;anticodon=(pos:521839..521841);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 521805 521881 . + . ID=id58;Parent=rna7;anticodon=(pos:521839..521841);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 521927 522688 . - . ID=gene551;Name=SFV_RS02760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02760;old_locus_tag=SFV_0499 NC_008258.1 Protein Homology CDS 521927 522688 . - 0 ID=cds543;Parent=gene551;Dbxref=Genbank:WP_001177456.1;Name=WP_001177456.1;Note=involved in the thermoregulation of ompA%2C ompC%2C lamB and envelope proteins;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_001177456.1;transl_table=11 NC_008258.1 RefSeq gene 522871 523761 . - . ID=gene552;Name=SFV_RS02765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02765;old_locus_tag=SFV_0500 NC_008258.1 Protein Homology CDS 522871 523761 . - 0 ID=cds544;Parent=gene552;Dbxref=Genbank:WP_001224555.1;Name=WP_001224555.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001224555.1;transl_table=11 NC_008258.1 RefSeq gene 523762 526407 . - . ID=gene553;Name=SFV_RS02770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02770;pseudo=true NC_008258.1 Protein Homology CDS 523762 526407 . - 0 ID=cds545;Parent=gene553;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 526394 528631 . - . ID=gene554;Name=nfrB;gbkey=Gene;gene=nfrB;gene_biotype=protein_coding;locus_tag=SFV_RS02775;old_locus_tag=SFV_0502 NC_008258.1 Protein Homology CDS 526394 528631 . - 0 ID=cds546;Parent=gene554;Dbxref=Genbank:WP_000383961.1;Name=WP_000383961.1;gbkey=CDS;gene=nfrB;product=bacteriophage N4 adsorption protein B;protein_id=WP_000383961.1;transl_table=11 NC_008258.1 RefSeq gene 528781 530223 . - . ID=gene555;Name=SFV_RS02780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02780;old_locus_tag=SFV_0503 NC_008258.1 Protein Homology CDS 528781 530223 . - 0 ID=cds547;Parent=gene555;Dbxref=Genbank:WP_000253804.1;Name=WP_000253804.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000253804.1;transl_table=11 NC_008258.1 RefSeq gene 530213 530896 . - . ID=gene556;Name=SFV_RS02785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02785;old_locus_tag=SFV_0504 NC_008258.1 Protein Homology CDS 530213 530896 . - 0 ID=cds548;Parent=gene556;Dbxref=Genbank:WP_000770943.1;Name=WP_000770943.1;Note=response regulator in two-component regulatory system with CusS%3B regulates the copper efflux system;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000770943.1;transl_table=11 NC_008258.1 RefSeq gene 531053 532435 . + . ID=gene557;Name=SFV_RS02790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02790;pseudo=true NC_008258.1 Protein Homology CDS 531053 532435 . + 0 ID=cds549;Parent=gene557;Note=with CusA%2C CusB and CusF is part of a cation efflux system that mediates resistance to copper and silver;gbkey=CDS;product=copper transporter;pseudo=true;transl_except=(pos:532097..532099%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 532459 532791 . + . ID=gene558;Name=SFV_RS02795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02795;old_locus_tag=SFV_0506 NC_008258.1 Protein Homology CDS 532459 532791 . + 0 ID=cds550;Parent=gene558;Dbxref=Genbank:WP_000709873.1;Name=WP_000709873.1;gbkey=CDS;product=cation efflux system protein CusF;protein_id=WP_000709873.1;transl_table=11 NC_008258.1 RefSeq gene 532807 533580 . + . ID=gene559;Name=SFV_RS02800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02800 NC_008258.1 Protein Homology CDS 532807 533580 . + 0 ID=cds551;Parent=gene559;Dbxref=Genbank:WP_000717140.1;Name=WP_000717140.1;gbkey=CDS;product=metal RND transporter;protein_id=WP_000717140.1;transl_table=11 NC_008258.1 RefSeq repeat_region 533514 535359 . + . ID=id59;gbkey=repeat_region NC_008258.1 RefSeq gene 533795 534055 . + . ID=gene560;Name=SFV_RS02805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02805 NC_008258.1 Protein Homology CDS 533795 534055 . + 0 ID=cds552;Parent=gene560;Dbxref=Genbank:WP_000752567.1;Name=WP_000752567.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000752567.1;transl_table=11 NC_008258.1 RefSeq region 534053 535358 . - . ID=id60;gbkey=mobile_element NC_008258.1 RefSeq gene 534095 534481 . - . ID=gene561;Name=SFV_RS02810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02810 NC_008258.1 Protein Homology CDS 534095 534481 . - 0 ID=cds553;Parent=gene561;Dbxref=Genbank:WP_000450389.1;Name=WP_000450389.1;gbkey=CDS;product=transposase;protein_id=WP_000450389.1;transl_table=11 NC_008258.1 RefSeq gene 534625 534978 . - . ID=gene562;Name=SFV_RS02815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02815 NC_008258.1 Protein Homology CDS 534625 534978 . - 0 ID=cds554;Parent=gene562;Dbxref=Genbank:WP_001129075.1;Name=WP_001129075.1;gbkey=CDS;product=transposase;protein_id=WP_001129075.1;transl_table=11 NC_008258.1 RefSeq gene 534978 535304 . - . ID=gene563;Name=SFV_RS02820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02820;old_locus_tag=SFV_0509 NC_008258.1 Protein Homology CDS 534978 535304 . - 0 ID=cds555;Parent=gene563;Dbxref=Genbank:WP_000165272.1;Name=WP_000165272.1;gbkey=CDS;product=transposase;protein_id=WP_000165272.1;transl_table=11 NC_008258.1 RefSeq gene 535381 536601 . + . ID=gene564;Name=SFV_RS02825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02825;old_locus_tag=SFV_0510 NC_008258.1 Protein Homology CDS 535381 536601 . + 0 ID=cds556;Parent=gene564;Dbxref=Genbank:WP_000580583.1;Name=WP_000580583.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000580583.1;transl_table=11 NC_008258.1 RefSeq repeat_region 536596 537867 . + . ID=id61;gbkey=repeat_region NC_008258.1 RefSeq region 536599 537862 . - . ID=id62;gbkey=mobile_element NC_008258.1 RefSeq gene 536642 537355 . - . ID=gene565;Name=SFV_RS02830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02830;old_locus_tag=SFV_0511 NC_008258.1 Protein Homology CDS 536642 537355 . - 0 ID=cds557;Parent=gene565;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 537496 537798 . - . ID=gene566;Name=SFV_RS02835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02835;old_locus_tag=SFV_0512 NC_008258.1 Protein Homology CDS 537496 537798 . - 0 ID=cds558;Parent=gene566;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 538142 539141 . - . ID=gene567;Name=SFV_RS02840;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02840;pseudo=true NC_008258.1 Protein Homology CDS 538142 539141 . - 0 ID=cds559;Parent=gene567;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acetyltransferase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 539497 540834 . + . ID=id63;gbkey=repeat_region NC_008258.1 RefSeq region 539500 540830 . - . ID=id64;gbkey=mobile_element NC_008258.1 RefSeq gene 539511 540416 . - . ID=gene568;Name=SFV_RS02845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02845;old_locus_tag=SFV_0513 NC_008258.1 Protein Homology CDS 539511 540416 . - 0 ID=cds560;Parent=gene568;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 540374 540739 . - . ID=gene569;Name=SFV_RS02850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02850;old_locus_tag=SFV_0514 NC_008258.1 Protein Homology CDS 540374 540739 . - 0 ID=cds561;Parent=gene569;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 540935 541545 . + . ID=gene570;Name=SFV_RS02855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02855;partial=true;pseudo=true;start_range=.,540935 NC_008258.1 Protein Homology CDS 540935 541545 . + 0 ID=cds562;Parent=gene570;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,540935;transl_table=11 NC_008258.1 RefSeq gene 541557 544736 . + . ID=gene571;Name=SFV_RS02860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02860;old_locus_tag=SFV_0515 NC_008258.1 Protein Homology CDS 541557 544736 . + 0 ID=cds563;Parent=gene571;Dbxref=Genbank:WP_000573961.1;Name=WP_000573961.1;gbkey=CDS;product=cation transporter;protein_id=WP_000573961.1;transl_table=11 NC_008258.1 RefSeq gene 544837 546213 . + . ID=gene572;Name=SFV_RS02865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02865;old_locus_tag=SFV_0516 NC_008258.1 Protein Homology CDS 544837 546213 . + 0 ID=cds564;Parent=gene572;Dbxref=Genbank:WP_000786320.1;Name=WP_000786320.1;gbkey=CDS;product=aromatic amino acid transporter;protein_id=WP_000786320.1;transl_table=11 NC_008258.1 RefSeq gene 546281 547528 . - . ID=gene573;Name=SFV_RS02870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02870;old_locus_tag=SFV_0517 NC_008258.1 Protein Homology CDS 546281 547528 . - 0 ID=cds565;Parent=gene573;Dbxref=Genbank:WP_001153148.1;Name=WP_001153148.1;gbkey=CDS;product=miniconductance mechanosensitive channel YbdG;protein_id=WP_001153148.1;transl_table=11 NC_008258.1 RefSeq gene 547636 548289 . - . ID=gene574;Name=SFV_RS02875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02875;old_locus_tag=SFV_0518 NC_008258.1 Protein Homology CDS 547636 548289 . - 0 ID=cds566;Parent=gene574;Dbxref=Genbank:WP_000351489.1;Name=WP_000351489.1;Note=catalyzes the reduction of nitroaromatic compounds such as nitrofurazone%2C quinones and the anti-tumor agent CB1954%3B NAD(P)H-dependent%3B oxygen insensitive;gbkey=CDS;product=dihydropteridine reductase;protein_id=WP_000351489.1;transl_table=11 NC_008258.1 RefSeq gene 548383 548751 . - . ID=gene575;Name=SFV_RS02880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02880;old_locus_tag=SFV_0519 NC_008258.1 Protein Homology CDS 548383 548751 . - 0 ID=cds567;Parent=gene575;Dbxref=Genbank:WP_000360957.1;Name=WP_000360957.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000360957.1;transl_table=11 NC_008258.1 RefSeq gene 548816 549064 . - . ID=gene576;Name=SFV_RS02885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02885;old_locus_tag=SFV_0520 NC_008258.1 Protein Homology CDS 548816 549064 . - 0 ID=cds568;Parent=gene576;Dbxref=Genbank:WP_000682518.1;Name=WP_000682518.1;gbkey=CDS;product=membrane protein;protein_id=WP_000682518.1;transl_table=11 NC_008258.1 RefSeq gene 549130 550248 . - . ID=gene577;Name=SFV_RS02890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02890;old_locus_tag=SFV_0521 NC_008258.1 Protein Homology CDS 549130 550248 . - 0 ID=cds569;Parent=gene577;Dbxref=Genbank:WP_001130611.1;Name=WP_001130611.1;gbkey=CDS;product=gamma-glutamyl:cysteine ligase;protein_id=WP_001130611.1;transl_table=11 NC_008258.1 RefSeq repeat_region 550632 554651 . + . ID=id65;gbkey=repeat_region NC_008258.1 RefSeq region 550633 551115 . + . ID=id66;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 550680 551162 . + . ID=gene578;Name=SFV_RS02895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02895;old_locus_tag=SFV_0522 NC_008258.1 Protein Homology CDS 550680 551162 . + 0 ID=cds570;Parent=gene578;Dbxref=Genbank:WP_000042693.1;Name=WP_000042693.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000042693.1;transl_table=11 NC_008258.1 RefSeq region 551116 552099 . - . ID=id67;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 551159 551872 . - . ID=gene579;Name=SFV_RS02900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02900;old_locus_tag=SFV_0523 NC_008258.1 Protein Homology CDS 551159 551872 . - 0 ID=cds571;Parent=gene579;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq region 552100 553405 . - . ID=id68;gbkey=mobile_element NC_008258.1 RefSeq gene 552421 552810 . - . ID=gene580;Name=SFV_RS02905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02905;partial=true;pseudo=true;start_range=.,552421 NC_008258.1 Protein Homology CDS 552421 552810 . - 0 ID=cds572;Parent=gene580;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,552421;transl_table=11 NC_008258.1 RefSeq gene 553025 553351 . - . ID=gene581;Name=SFV_RS02910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02910;old_locus_tag=SFV_0525 NC_008258.1 Protein Homology CDS 553025 553351 . - 0 ID=cds573;Parent=gene581;Dbxref=Genbank:WP_000165272.1;Name=WP_000165272.1;gbkey=CDS;product=transposase;protein_id=WP_000165272.1;transl_table=11 NC_008258.1 RefSeq region 553405 553688 . - . ID=id69;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 553406 553624 . - . ID=gene582;Name=SFV_RS02915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS02915;old_locus_tag=SFV_0526;partial=true;pseudo=true;start_range=.,553406 NC_008258.1 Protein Homology CDS 553406 553624 . - 0 ID=cds574;Parent=gene582;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,553406;transl_table=11 NC_008258.1 RefSeq region 553689 554651 . + . ID=id70;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 553774 554625 . + . ID=gene583;Name=SFV_RS02920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02920;old_locus_tag=SFV_0527 NC_008258.1 Protein Homology CDS 553774 554625 . + 0 ID=cds575;Parent=gene583;Dbxref=Genbank:WP_000866383.1;Name=WP_000866383.1;gbkey=CDS;product=integrase;protein_id=WP_000866383.1;transl_table=11 NC_008258.1 RefSeq repeat_region 554684 554975 . + . ID=id71;gbkey=repeat_region NC_008258.1 RefSeq gene 554722 554874 . + . ID=gene584;Name=SFV_RS02925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02925 NC_008258.1 Protein Homology CDS 554722 554874 . + 0 ID=cds576;Parent=gene584;Dbxref=Genbank:WP_000956467.1;Name=WP_000956467.1;gbkey=CDS;product=protein HokE;protein_id=WP_000956467.1;transl_table=11 NC_008258.1 RefSeq repeat_region 555187 555478 . + . ID=id72;gbkey=repeat_region NC_008258.1 RefSeq gene 555225 555377 . + . ID=gene585;Name=SFV_RS02930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02930 NC_008258.1 Protein Homology CDS 555225 555377 . + 0 ID=cds577;Parent=gene585;Dbxref=Genbank:WP_000956465.1;Name=WP_000956465.1;gbkey=CDS;product=protein HokE;protein_id=WP_000956465.1;transl_table=11 NC_008258.1 RefSeq gene 555499 556128 . - . ID=gene586;Name=SFV_RS02935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02935;old_locus_tag=SFV_0528 NC_008258.1 Protein Homology CDS 555499 556128 . - 0 ID=cds578;Parent=gene586;Dbxref=Genbank:WP_000228135.1;Name=WP_000228135.1;gbkey=CDS;product=4'-phosphopantetheinyl transferase;protein_id=WP_000228135.1;transl_table=11 NC_008258.1 RefSeq gene 556294 558534 . - . ID=gene587;Name=SFV_RS02940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02940;old_locus_tag=SFV_0529 NC_008258.1 Protein Homology CDS 556294 558534 . - 0 ID=cds579;Parent=gene587;Dbxref=Genbank:WP_001034936.1;Name=WP_001034936.1;Note=Fep%3B Cbt%3B Cbr%3B FeuB%3B FepA%3B PfeA%3B IroN%3B BfeA%3B outer membrane receptor of ferric enterobactin and colicins B and D%3B interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space;gbkey=CDS;product=outer membrane receptor FepA;protein_id=WP_001034936.1;transl_table=11 NC_008258.1 RefSeq gene 558777 559979 . + . ID=gene588;Name=SFV_RS02945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02945;old_locus_tag=SFV_0530 NC_008258.1 Protein Homology CDS 558777 559979 . + 0 ID=cds580;Parent=gene588;Dbxref=Genbank:WP_000125830.1;Name=WP_000125830.1;gbkey=CDS;product=enterobactin/ferric enterobactin esterase;protein_id=WP_000125830.1;transl_table=11 NC_008258.1 RefSeq gene 559982 560200 . + . ID=gene589;Name=SFV_RS02950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02950;old_locus_tag=SFV_0531 NC_008258.1 Protein Homology CDS 559982 560200 . + 0 ID=cds581;Parent=gene589;Dbxref=Genbank:WP_000885782.1;Name=WP_000885782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000885782.1;transl_table=11 NC_008258.1 RefSeq gene 560197 564090 . + . ID=gene590;Name=entF;gbkey=Gene;gene=entF;gene_biotype=protein_coding;locus_tag=SFV_RS02955;old_locus_tag=SFV_0532 NC_008258.1 Protein Homology CDS 560197 564090 . + 0 ID=cds582;Parent=gene590;Dbxref=Genbank:WP_000077743.1;Name=WP_000077743.1;Note=with EntB%2C EntD%2C and EntE forms the multienzyme complex enterobactin synthase%3B EntF is the serine activating enzyme which catalyzes the formation of the amide and ester bonds of the cyclic enterobactin;gbkey=CDS;gene=entF;product=enterobactin synthase subunit F;protein_id=WP_000077743.1;transl_table=11 NC_008258.1 RefSeq repeat_region 564114 564890 . + . ID=id73;gbkey=repeat_region NC_008258.1 RefSeq region 564119 564886 . + . ID=id74;gbkey=mobile_element NC_008258.1 RefSeq gene 564368 564871 . + . ID=gene591;Name=SFV_RS02960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02960;old_locus_tag=SFV_0534 NC_008258.1 Protein Homology CDS 564368 564871 . + 0 ID=cds583;Parent=gene591;Dbxref=Genbank:WP_005105115.1;Name=WP_005105115.1;gbkey=CDS;product=transposase;protein_id=WP_005105115.1;transl_table=11 NC_008258.1 RefSeq gene 565082 565471 . + . ID=gene592;Name=SFV_RS02965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02965 NC_008258.1 Protein Homology CDS 565082 565471 . + 0 ID=cds584;Parent=gene592;Dbxref=Genbank:WP_000096739.1;Name=WP_000096739.1;gbkey=CDS;product=enterobactin transporter;protein_id=WP_000096739.1;transl_table=11 NC_008258.1 RefSeq gene 565535 566215 . + . ID=gene593;Name=SFV_RS02970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02970 NC_008258.1 Protein Homology CDS 565535 566215 . + 0 ID=cds585;Parent=gene593;Dbxref=Genbank:WP_000648659.1;Name=WP_000648659.1;gbkey=CDS;product=enterobactin transporter;protein_id=WP_000648659.1;transl_table=11 NC_008258.1 RefSeq gene 566212 567027 . - . ID=gene594;Name=SFV_RS02975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02975;old_locus_tag=SFV_0536 NC_008258.1 Protein Homology CDS 566212 567027 . - 0 ID=cds586;Parent=gene594;Dbxref=Genbank:WP_000140647.1;Name=WP_000140647.1;Note=with FepBDE is involved in the transport of ferric enterobactin;gbkey=CDS;product=ferric enterobactin transport ATP-binding protein FepC;protein_id=WP_000140647.1;transl_table=11 NC_008258.1 RefSeq gene 567024 568016 . - . ID=gene595;Name=SFV_RS02980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02980;old_locus_tag=SFV_0537 NC_008258.1 Protein Homology CDS 567024 568016 . - 0 ID=cds587;Parent=gene595;Dbxref=Genbank:WP_000640961.1;Name=WP_000640961.1;Note=with FepBCD is involved in the transport of ferric enterobactin;gbkey=CDS;product=iron-enterobactin transporter permease;protein_id=WP_000640961.1;transl_table=11 NC_008258.1 RefSeq gene 568013 569017 . - . ID=gene596;Name=SFV_RS02985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02985;old_locus_tag=SFV_0538 NC_008258.1 Protein Homology CDS 568013 569017 . - 0 ID=cds588;Parent=gene596;Dbxref=Genbank:WP_001298899.1;Name=WP_001298899.1;Note=with FepBCG is involved in the transport of ferric enterobactin;gbkey=CDS;product=iron-enterobactin transporter membrane protein;protein_id=WP_001298899.1;transl_table=11 NC_008258.1 RefSeq gene 569128 570360 . + . ID=gene597;Name=SFV_RS02990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02990;old_locus_tag=SFV_0539 NC_008258.1 Protein Homology CDS 569128 570360 . + 0 ID=cds589;Parent=gene597;Dbxref=Genbank:WP_001041805.1;Name=WP_001041805.1;Note=protein p43%3B inner membrane protein that exports enterobactin to the periplasmic space%3B member of the major facilitator superfamily (MFS) of transporters;gbkey=CDS;product=enterobactin exporter EntS;protein_id=WP_001041805.1;transl_table=11 NC_008258.1 RefSeq gene 570364 571320 . - . ID=gene598;Name=SFV_RS02995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS02995;old_locus_tag=SFV_0540 NC_008258.1 Protein Homology CDS 570364 571320 . - 0 ID=cds590;Parent=gene598;Dbxref=Genbank:WP_001234333.1;Name=WP_001234333.1;Note=with FepCDG is involved in the transport of ferric enterobactin;gbkey=CDS;product=antibiotic ABC transporter substrate-binding protein;protein_id=WP_001234333.1;transl_table=11 NC_008258.1 RefSeq gene 571612 572787 . + . ID=gene599;Name=SFV_RS03000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03000;pseudo=true NC_008258.1 Protein Homology CDS 571612 572787 . + 0 ID=cds591;Parent=gene599;gbkey=CDS;product=isochorismate synthase;pseudo=true;transl_except=(pos:571891..571893%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 572797 574407 . + . ID=gene600;Name=entE;gbkey=Gene;gene=entE;gene_biotype=protein_coding;locus_tag=SFV_RS03005;old_locus_tag=SFV_0542 NC_008258.1 Protein Homology CDS 572797 574407 . + 0 ID=cds592;Parent=gene600;Dbxref=Genbank:WP_000026772.1;Name=WP_000026772.1;Note=bifunctional 2%2C3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase%3B activates the carboxylate group of 2%2C3-dihydroxy-benzoate forming (2%2C3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2%2C3-dihydroxy-benzoate adenylate;gbkey=CDS;gene=entE;product=enterobactin synthase subunit E;protein_id=WP_000026772.1;transl_table=11 NC_008258.1 RefSeq gene 574421 575278 . + . ID=gene601;Name=SFV_RS03010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03010;old_locus_tag=SFV_0543 NC_008258.1 Protein Homology CDS 574421 575278 . + 0 ID=cds593;Parent=gene601;Dbxref=Genbank:WP_001007156.1;Name=WP_001007156.1;Note=2%2C3 dihydro-2%2C3 dihydroxybenzoate synthase%3B catalyzes the formation of 2%2C3 dihydro-2%2C3 dihydroxybenzoate and pyruvate from isochorismate%3B with Ent DEF is involved in enterobactin synthesis;gbkey=CDS;product=isochorismatase;protein_id=WP_001007156.1;transl_table=11 NC_008258.1 RefSeq gene 575278 576024 . + . ID=gene602;Name=SFV_RS03015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03015;old_locus_tag=SFV_0544 NC_008258.1 Protein Homology CDS 575278 576024 . + 0 ID=cds594;Parent=gene602;Dbxref=Genbank:WP_000347662.1;Name=WP_000347662.1;Note=catalyzes the formation of 2%2C3-dihydroxybenzoate from 2%2C3-dihydro-2%2C3-dihydroxybenzoate%3B involved in the biosynthesis of siderophores%2C enterobactin%2C bacillibactin or vibriobactin;gbkey=CDS;product=2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase;protein_id=WP_000347662.1;transl_table=11 NC_008258.1 RefSeq gene 576027 576440 . + . ID=gene603;Name=SFV_RS03020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03020;old_locus_tag=SFV_0545 NC_008258.1 Protein Homology CDS 576027 576440 . + 0 ID=cds595;Parent=gene603;Dbxref=Genbank:WP_000637953.1;Name=WP_000637953.1;Note=required for efficient enterobactin production;gbkey=CDS;product=proofreading thioesterase EntH;protein_id=WP_000637953.1;transl_table=11 NC_008258.1 RefSeq gene 576621 578726 . + . ID=gene604;Name=SFV_RS03025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03025;old_locus_tag=SFV_0546 NC_008258.1 Protein Homology CDS 576621 578726 . + 0 ID=cds596;Parent=gene604;Dbxref=Genbank:WP_001043138.1;Name=WP_001043138.1;gbkey=CDS;product=carbon starvation protein A;protein_id=WP_001043138.1;transl_table=11 NC_008258.1 RefSeq gene 578908 579105 . + . ID=gene605;Name=SFV_RS03030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03030;old_locus_tag=SFV_0547 NC_008258.1 Protein Homology CDS 578908 579105 . + 0 ID=cds597;Parent=gene605;Dbxref=Genbank:WP_000460431.1;Name=WP_000460431.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000460431.1;transl_table=11 NC_008258.1 RefSeq gene 579115 580203 . - . ID=gene606;Name=SFV_RS03035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03035;old_locus_tag=SFV_0548 NC_008258.1 Protein Homology CDS 579115 580203 . - 0 ID=cds598;Parent=gene606;Dbxref=Genbank:WP_001120450.1;Name=WP_001120450.1;Note=member of the iron-containing alcohol dehydrogenase family;gbkey=CDS;product=oxidoreductase;protein_id=WP_001120450.1;transl_table=11 NC_008258.1 RefSeq gene 580312 581472 . + . ID=gene607;Name=SFV_RS03040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03040;old_locus_tag=SFV_0549 NC_008258.1 Protein Homology CDS 580312 581472 . + 0 ID=cds599;Parent=gene607;Dbxref=Genbank:WP_000183927.1;Name=WP_000183927.1;Note=catalyzes the transfer of an amino moiety%3B preference for methionine followed by histidine and phenylalanine;gbkey=CDS;product=methionine aminotransferase;protein_id=WP_000183927.1;transl_table=11 NC_008258.1 RefSeq gene 581473 581964 . - . ID=gene608;Name=SFV_RS03045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03045;old_locus_tag=SFV_0550 NC_008258.1 Protein Homology CDS 581473 581964 . - 0 ID=cds600;Parent=gene608;Dbxref=Genbank:WP_000340678.1;Name=WP_000340678.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000340678.1;transl_table=11 NC_008258.1 RefSeq repeat_region 581983 583234 . + . ID=id75;gbkey=repeat_region NC_008258.1 RefSeq region 581984 583232 . - . ID=id76;gbkey=mobile_element NC_008258.1 RefSeq gene 581992 582831 . - . ID=gene609;Name=SFV_RS03050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03050;old_locus_tag=SFV_0551 NC_008258.1 Protein Homology CDS 581992 582831 . - 0 ID=cds601;Parent=gene609;Dbxref=Genbank:WP_004021703.1;Name=WP_004021703.1;gbkey=CDS;product=transposase;protein_id=WP_004021703.1;transl_table=11 NC_008258.1 RefSeq gene 582858 583160 . - . ID=gene610;Name=SFV_RS03055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03055;old_locus_tag=SFV_0552 NC_008258.1 Protein Homology CDS 582858 583160 . - 0 ID=cds602;Parent=gene610;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 583232 583342 . - . ID=gene611;Name=SFV_RS03060;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03060;partial=true;pseudo=true;start_range=.,583232 NC_008258.1 Protein Homology CDS 583232 583342 . - 0 ID=cds603;Parent=gene611;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=ibrB domain protein;pseudo=true;start_range=.,583232;transl_table=11 NC_008258.1 RefSeq gene 583327 583851 . - . ID=gene612;Name=SFV_RS03065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03065;old_locus_tag=SFV_0553 NC_008258.1 Protein Homology CDS 583327 583851 . - 0 ID=cds604;Parent=gene612;Dbxref=Genbank:WP_000283753.1;Name=WP_000283753.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000283753.1;transl_table=11 NC_008258.1 RefSeq gene 583894 584304 . - . ID=gene613;Name=SFV_RS03070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03070;old_locus_tag=SFV_0554 NC_008258.1 Protein Homology CDS 583894 584304 . - 0 ID=cds605;Parent=gene613;Dbxref=Genbank:WP_000287805.1;Name=WP_000287805.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000287805.1;transl_table=11 NC_008258.1 RefSeq repeat_region 584347 585578 . + . ID=id77;gbkey=repeat_region NC_008258.1 RefSeq gene 584410 584688 . + . ID=gene614;Name=SFV_RS03075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03075;old_locus_tag=SFV_0555 NC_008258.1 Protein Homology CDS 584410 584688 . + 0 ID=cds606;Parent=gene614;Dbxref=Genbank:WP_000015553.1;Name=WP_000015553.1;gbkey=CDS;product=transposase;protein_id=WP_000015553.1;transl_table=11 NC_008258.1 RefSeq gene 584745 585557 . + . ID=gene615;Name=SFV_RS03080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03080;old_locus_tag=SFV_0556 NC_008258.1 Protein Homology CDS 584745 585557 . + 0 ID=cds607;Parent=gene615;Dbxref=Genbank:WP_000887807.1;Name=WP_000887807.1;gbkey=CDS;product=transposase;protein_id=WP_000887807.1;transl_table=11 NC_008258.1 RefSeq gene 585926 586828 . - . ID=gene616;Name=SFV_RS03085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03085;old_locus_tag=SFV_0557 NC_008258.1 Protein Homology CDS 585926 586828 . - 0 ID=cds608;Parent=gene616;Dbxref=Genbank:WP_000002447.1;Name=WP_000002447.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000002447.1;transl_table=11 NC_008258.1 RefSeq gene 587038 587784 . - . ID=gene617;Name=dsbG;gbkey=Gene;gene=dsbG;gene_biotype=protein_coding;locus_tag=SFV_RS03090;old_locus_tag=SFV_0558 NC_008258.1 Protein Homology CDS 587038 587784 . - 0 ID=cds609;Parent=gene617;Dbxref=Genbank:WP_005052888.1;Name=WP_005052888.1;Note=Involved in disulfide bond formation;gbkey=CDS;gene=dsbG;product=disulfide isomerase;protein_id=WP_005052888.1;transl_table=11 NC_008258.1 RefSeq gene 588156 588719 . + . ID=gene618;Name=SFV_RS03095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03095;old_locus_tag=SFV_0559 NC_008258.1 Protein Homology CDS 588156 588719 . + 0 ID=cds610;Parent=gene618;Dbxref=Genbank:WP_000052796.1;Name=WP_000052796.1;Note=with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols%3B AhpC reduced the hydroperoxide substrate;gbkey=CDS;product=alkyl hydroperoxide reductase subunit C;protein_id=WP_000052796.1;transl_table=11 NC_008258.1 RefSeq gene 588964 590529 . + . ID=gene619;Name=SFV_RS03100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03100;old_locus_tag=SFV_0560;pseudo=true NC_008258.1 Protein Homology CDS 588964 590529 . + 0 ID=cds611;Parent=gene619;exception=annotated by transcript or proteomic data;gbkey=CDS;product=alkyl hydroperoxide reductase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 590650 591078 . - . ID=gene620;Name=SFV_RS03105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03105;old_locus_tag=SFV_0561 NC_008258.1 Protein Homology CDS 590650 591078 . - 0 ID=cds612;Parent=gene620;Dbxref=Genbank:WP_000276167.1;Name=WP_000276167.1;Note=interacts with GroEL%3B is induced by starvation%2C heat shock and toxic agents;gbkey=CDS;product=universal stress protein G;protein_id=WP_000276167.1;transl_table=11 NC_008258.1 RefSeq gene 591299 592537 . + . ID=gene621;Name=SFV_RS03110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03110;old_locus_tag=SFV_0562 NC_008258.1 Protein Homology CDS 591299 592537 . + 0 ID=cds613;Parent=gene621;Dbxref=Genbank:WP_000646166.1;Name=WP_000646166.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000646166.1;transl_table=11 NC_008258.1 RefSeq gene 592541 592729 . - . ID=gene622;Name=SFV_RS03115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03115 NC_008258.1 Protein Homology CDS 592541 592729 . - 0 ID=cds614;Parent=gene622;Dbxref=Genbank:WP_001301130.1;Name=WP_001301130.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001301130.1;transl_table=11 NC_008258.1 RefSeq gene 592768 593178 . - . ID=gene623;Name=SFV_RS03120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03120;old_locus_tag=SFV_0563 NC_008258.1 Protein Homology CDS 592768 593178 . - 0 ID=cds615;Parent=gene623;Dbxref=Genbank:WP_000089731.1;Name=WP_000089731.1;Note=Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis%2C CTP for lipid synthesis%2C and GTP for protein elongation;gbkey=CDS;product=nucleoside diphosphate kinase regulator;protein_id=WP_000089731.1;transl_table=11 NC_008258.1 RefSeq gene 593407 594213 . - . ID=gene624;Name=SFV_RS03125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03125;old_locus_tag=SFV_0564 NC_008258.1 Protein Homology CDS 593407 594213 . - 0 ID=cds616;Parent=gene624;Dbxref=Genbank:WP_024260235.1;Name=WP_024260235.1;gbkey=CDS;product=ribonuclease I;protein_id=WP_024260235.1;transl_table=11 NC_008258.1 RefSeq gene 594327 595790 . - . ID=gene625;Name=SFV_RS03130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03130;old_locus_tag=SFV_0565 NC_008258.1 Protein Homology CDS 594327 595790 . - 0 ID=cds617;Parent=gene625;Dbxref=Genbank:WP_000050320.1;Name=WP_000050320.1;Note=involved in the transport of citrate into the cell along with the export of succinate out of the cell;gbkey=CDS;product=antiporter;protein_id=WP_000050320.1;transl_table=11 NC_008258.1 RefSeq gene 595841 596719 . - . ID=gene626;Name=citG;gbkey=Gene;gene=citG;gene_biotype=protein_coding;locus_tag=SFV_RS03135;old_locus_tag=SFV_0566 NC_008258.1 Protein Homology CDS 595841 596719 . - 0 ID=cds618;Parent=gene626;Dbxref=Genbank:WP_000062462.1;Name=WP_000062462.1;Note=catalyzes the formation of 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA from ATP and 3-dephospho-CoA;gbkey=CDS;gene=citG;product=2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase;protein_id=WP_000062462.1;transl_table=11 NC_008258.1 RefSeq gene 596694 597245 . - . ID=gene627;Name=citX;gbkey=Gene;gene=citX;gene_biotype=protein_coding;locus_tag=SFV_RS03140;old_locus_tag=SFV_0567 NC_008258.1 Protein Homology CDS 596694 597245 . - 0 ID=cds619;Parent=gene627;Dbxref=Genbank:WP_000550399.1;Name=WP_000550399.1;Note=2'-(5''-phosphoribosyl)-3'-dephospho-CoA transferase%3B holo-citrate lyase synthase%3B CitG forms the prosthetic group precursor 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA which is then transferred to apo-ACP by CitX to produce holo-ACP and pyrophosphate;gbkey=CDS;gene=citX;product=apo-citrate lyase phosphoribosyl-dephospho-CoA transferase;protein_id=WP_000550399.1;transl_table=11 NC_008258.1 RefSeq gene 597249 598781 . - . ID=gene628;Name=SFV_RS03145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03145;old_locus_tag=SFV_0568 NC_008258.1 Protein Homology CDS 597249 598781 . - 0 ID=cds620;Parent=gene628;Dbxref=Genbank:WP_024260236.1;Name=WP_024260236.1;Note=citrate-ACP transferase%2C the alpha subunit catalyzes the formation of (3S)-citryl-CoA from acetyl-CoA and citrate;gbkey=CDS;product=citrate lyase subunit alpha;protein_id=WP_024260236.1;transl_table=11 NC_008258.1 RefSeq gene 598792 599700 . - . ID=gene629;Name=SFV_RS03150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03150;old_locus_tag=SFV_0569 NC_008258.1 Protein Homology CDS 598792 599700 . - 0 ID=cds621;Parent=gene629;Dbxref=Genbank:WP_005052881.1;Name=WP_005052881.1;Note=citryl-ACP lyase%3B catalyzes the formation of acetate and oxaloacetate from citrate;gbkey=CDS;product=citrate lyase subunit beta;protein_id=WP_005052881.1;transl_table=11 NC_008258.1 RefSeq gene 599697 599993 . - . ID=gene630;Name=SFV_RS03155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03155;old_locus_tag=SFV_0570 NC_008258.1 Protein Homology CDS 599697 599993 . - 0 ID=cds622;Parent=gene630;Dbxref=Genbank:WP_000700703.1;Name=WP_000700703.1;gbkey=CDS;product=citrate lyase ACP;protein_id=WP_000700703.1;transl_table=11 NC_008258.1 RefSeq gene 600008 600968 . - . ID=gene631;Name=SFV_RS03160;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03160;pseudo=true NC_008258.1 Protein Homology CDS 600008 600968 . - 0 ID=cds623;Parent=gene631;Note=activates citrate lyase by acetylation of the gamma subunit;exception=annotated by transcript or proteomic data;gbkey=CDS;product=[citrate [pro-3S]-lyase] ligase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 601244 602017 . + . ID=id78;gbkey=repeat_region NC_008258.1 RefSeq region 601249 602016 . - . ID=id79;gbkey=mobile_element NC_008258.1 RefSeq gene 601264 601767 . - . ID=gene632;Name=SFV_RS03165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03165;old_locus_tag=SFV_0572 NC_008258.1 Protein Homology CDS 601264 601767 . - 0 ID=cds624;Parent=gene632;Dbxref=Genbank:WP_000089789.1;Name=WP_000089789.1;gbkey=CDS;product=transposase;protein_id=WP_000089789.1;transl_table=11 NC_008258.1 RefSeq gene 601686 601910 . - . ID=gene633;Name=SFV_RS03170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03170 NC_008258.1 Protein Homology CDS 601686 601910 . - 0 ID=cds625;Parent=gene633;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 601881 602594 . + . ID=gene634;Name=SFV_RS03175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03175;old_locus_tag=SFV_0573 NC_008258.1 Protein Homology CDS 601881 602594 . + 0 ID=cds626;Parent=gene634;Dbxref=Genbank:WP_005105135.1;Name=WP_005105135.1;gbkey=CDS;product=integrase;protein_id=WP_005105135.1;transl_table=11 NC_008258.1 RefSeq gene 602830 603648 . + . ID=gene635;Name=SFV_RS03180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03180;old_locus_tag=SFV_0574 NC_008258.1 Protein Homology CDS 602830 603648 . + 0 ID=cds627;Parent=gene635;Dbxref=Genbank:WP_005049371.1;Name=WP_005049371.1;gbkey=CDS;product=pyridoxal phosphate phosphatase;protein_id=WP_005049371.1;transl_table=11 NC_008258.1 RefSeq gene 603649 604707 . - . ID=gene636;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=SFV_RS03185;old_locus_tag=SFV_0575 NC_008258.1 Protein Homology CDS 603649 604707 . - 0 ID=cds628;Parent=gene636;Dbxref=Genbank:WP_000891695.1;Name=WP_000891695.1;Note=Part of the ABC transporter complex modABC involved in molybdenum import;gbkey=CDS;gene=modC;product=molybdenum import ATP-binding protein ModC;protein_id=WP_000891695.1;transl_table=11 NC_008258.1 RefSeq gene 604710 605399 . - . ID=gene637;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;gene_synonym=chlJ;locus_tag=SFV_RS03190;old_locus_tag=SFV_0576 NC_008258.1 Protein Homology CDS 604710 605399 . - 0 ID=cds629;Parent=gene637;Dbxref=Genbank:WP_000604036.1;Name=WP_000604036.1;Note=part of ModCBA molybdate transporter%3B member of ABC superfamily%3B inner membrane component%3B regulated by repressor protein ModE;gbkey=CDS;gene=modB;product=molybdate ABC transporter permease;protein_id=WP_000604036.1;transl_table=11 NC_008258.1 RefSeq gene 605399 606172 . - . ID=gene638;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=SFV_RS03195;old_locus_tag=SFV_0577 NC_008258.1 Protein Homology CDS 605399 606172 . - 0 ID=cds630;Parent=gene638;Dbxref=Genbank:WP_000101994.1;Name=WP_000101994.1;Note=with ModCB is involved in the high-affinity transport of molybdate;gbkey=CDS;gene=modA;product=molybdenum ABC transporter substrate-binding protein;protein_id=WP_000101994.1;transl_table=11 NC_008258.1 RefSeq gene 606339 606488 . - . ID=gene639;Name=SFV_RS03200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03200;old_locus_tag=SFV_0578 NC_008258.1 Protein Homology CDS 606339 606488 . - 0 ID=cds631;Parent=gene639;Dbxref=Genbank:WP_000891512.1;Name=WP_000891512.1;gbkey=CDS;product=multidrug efflux pump accessory protein AcrZ;protein_id=WP_000891512.1;transl_table=11 NC_008258.1 RefSeq gene 606617 607405 . + . ID=gene640;Name=SFV_RS03205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03205;old_locus_tag=SFV_0579 NC_008258.1 Protein Homology CDS 606617 607405 . + 0 ID=cds632;Parent=gene640;Dbxref=Genbank:WP_001147439.1;Name=WP_001147439.1;Note=represses the modABCD operon and activates the moaABCD and napFDAGHBC operons;gbkey=CDS;product=transcriptional regulator ModE;protein_id=WP_001147439.1;transl_table=11 NC_008258.1 RefSeq gene 607473 608945 . + . ID=gene641;Name=SFV_RS03215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03215;old_locus_tag=SFV_0580 NC_008258.1 Protein Homology CDS 607473 608945 . + 0 ID=cds633;Parent=gene641;Dbxref=Genbank:WP_000096898.1;Name=WP_000096898.1;Note=contains 2 ATP-binding cassettes%3B involved in the transport of molybdenum;gbkey=CDS;product=molybdenum ABC transporter ATP-binding protein;protein_id=WP_000096898.1;transl_table=11 NC_008258.1 RefSeq gene 609206 610222 . + . ID=gene642;Name=SFV_RS03220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03220;old_locus_tag=SFV_0581 NC_008258.1 Protein Homology CDS 609206 610222 . + 0 ID=cds634;Parent=gene642;Dbxref=Genbank:WP_001265432.1;Name=WP_001265432.1;gbkey=CDS;product=UDP-galactose-4-epimerase;protein_id=WP_001265432.1;transl_table=11 NC_008258.1 RefSeq gene 610232 611278 . + . ID=gene643;Name=SFV_RS03225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03225;old_locus_tag=SFV_0582 NC_008258.1 Protein Homology CDS 610232 611278 . + 0 ID=cds635;Parent=gene643;Dbxref=Genbank:WP_000191508.1;Name=WP_000191508.1;Note=catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P;gbkey=CDS;product=galactose-1-phosphate uridylyltransferase;protein_id=WP_000191508.1;transl_table=11 NC_008258.1 RefSeq gene 611282 612430 . + . ID=gene644;Name=SFV_RS03230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03230;old_locus_tag=SFV_0583 NC_008258.1 Protein Homology CDS 611282 612430 . + 0 ID=cds636;Parent=gene644;Dbxref=Genbank:WP_000053434.1;Name=WP_000053434.1;Note=catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism;gbkey=CDS;product=galactokinase;protein_id=WP_000053434.1;transl_table=11 NC_008258.1 RefSeq gene 612424 613464 . + . ID=gene645;Name=galM;gbkey=Gene;gene=galM;gene_biotype=protein_coding;locus_tag=SFV_RS03235;old_locus_tag=SFV_0584 NC_008258.1 Protein Homology CDS 612424 613464 . + 0 ID=cds637;Parent=gene645;Dbxref=Genbank:WP_000931389.1;Name=WP_000931389.1;Note=mutarotase%3B catalyzes the conversion of beta-galactose to the alpha-anomer%3B links the metabolism of lactose and galactose;gbkey=CDS;gene=galM;product=aldose 1-epimerase;protein_id=WP_000931389.1;transl_table=11 NC_008258.1 RefSeq gene 613667 614419 . + . ID=gene646;Name=gpmA;gbkey=Gene;gene=gpmA;gene_biotype=protein_coding;locus_tag=SFV_RS03240;old_locus_tag=SFV_0585 NC_008258.1 Protein Homology CDS 613667 614419 . + 0 ID=cds638;Parent=gene646;Dbxref=Genbank:WP_001295305.1;Name=WP_001295305.1;Note=2%2C3-bisphosphoglycerate-dependent%3B catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate;gbkey=CDS;gene=gpmA;product=2%2C3-bisphosphoglycerate-dependent phosphoglycerate mutase;protein_id=WP_001295305.1;transl_table=11 NC_008258.1 RefSeq gene 614586 615638 . - . ID=gene647;Name=SFV_RS03245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03245;old_locus_tag=SFV_0586 NC_008258.1 Protein Homology CDS 614586 615638 . - 0 ID=cds639;Parent=gene647;Dbxref=Genbank:WP_001109193.1;Name=WP_001109193.1;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C phenylalanine sensitive;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_001109193.1;transl_table=11 NC_008258.1 RefSeq gene 615746 615859 . + . ID=gene648;Name=SFV_RS03250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03250;partial=true;pseudo=true;start_range=.,615746 NC_008258.1 Protein Homology CDS 615746 615859 . + 0 ID=cds640;Parent=gene648;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;start_range=.,615746;transl_table=11 NC_008258.1 RefSeq gene 615954 616334 . + . ID=gene649;Name=SFV_RS03255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03255;old_locus_tag=SFV_0587 NC_008258.1 Protein Homology CDS 615954 616334 . + 0 ID=cds641;Parent=gene649;Dbxref=Genbank:WP_000784351.1;Name=WP_000784351.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000784351.1;transl_table=11 NC_008258.1 RefSeq gene 616448 617389 . + . ID=gene650;Name=SFV_RS03260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03260;old_locus_tag=SFV_0588 NC_008258.1 Protein Homology CDS 616448 617389 . + 0 ID=cds642;Parent=gene650;Dbxref=Genbank:WP_000951301.1;Name=WP_000951301.1;Note=involved in zinc efflux across the cytoplasmic membrane;gbkey=CDS;product=zinc transporter ZitB;protein_id=WP_000951301.1;transl_table=11 NC_008258.1 RefSeq gene 617386 618105 . - . ID=gene651;Name=SFV_RS03265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03265;old_locus_tag=SFV_0589 NC_008258.1 Protein Homology CDS 617386 618105 . - 0 ID=cds643;Parent=gene651;Dbxref=Genbank:WP_000345410.1;Name=WP_000345410.1;Note=involved in nicotinamide riboside transport;gbkey=CDS;product=nicotinamide riboside transporter PnuC;protein_id=WP_000345410.1;transl_table=11 NC_008258.1 RefSeq gene 618143 619186 . - . ID=gene652;Name=SFV_RS03270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03270;old_locus_tag=SFV_0590 NC_008258.1 Protein Homology CDS 618143 619186 . - 0 ID=cds644;Parent=gene652;Dbxref=Genbank:WP_000115305.1;Name=WP_000115305.1;Note=3 different subfamilies%3B catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate;gbkey=CDS;product=quinolinate synthase A;protein_id=WP_000115305.1;transl_table=11 NC_008258.1 RefSeq repeat_region 619399 619589 . + . ID=id80;gbkey=repeat_region NC_008258.1 RefSeq gene 619435 619510 . - . ID=gene653;Name=SFV_RS03275;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03275;old_locus_tag=SFV_0591 NC_008258.1 tRNAscan-SE tRNA 619435 619510 . - . ID=rna8;Parent=gene653;anticodon=(pos:complement(619475..619477));gbkey=tRNA;product=tRNA-Lys NC_008258.1 tRNAscan-SE exon 619435 619510 . - . ID=id81;Parent=rna8;anticodon=(pos:complement(619475..619477));gbkey=tRNA;product=tRNA-Lys NC_008258.1 RefSeq gene 619514 619589 . - . ID=gene654;Name=SFV_RS03280;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03280;old_locus_tag=SFV_0592 NC_008258.1 tRNAscan-SE tRNA 619514 619589 . - . ID=rna9;Parent=gene654;anticodon=(pos:complement(619554..619556));gbkey=tRNA;product=tRNA-Val NC_008258.1 tRNAscan-SE exon 619514 619589 . - . ID=id82;Parent=rna9;anticodon=(pos:complement(619554..619556));gbkey=tRNA;product=tRNA-Val NC_008258.1 RefSeq gene 619725 619800 . - . ID=gene655;Name=SFV_RS03285;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03285;old_locus_tag=SFV_0593 NC_008258.1 tRNAscan-SE tRNA 619725 619800 . - . ID=rna10;Parent=gene655;anticodon=(pos:complement(619765..619767));gbkey=tRNA;product=tRNA-Lys NC_008258.1 tRNAscan-SE exon 619725 619800 . - . ID=id83;Parent=rna10;anticodon=(pos:complement(619765..619767));gbkey=tRNA;product=tRNA-Lys NC_008258.1 RefSeq gene 619965 620756 . - . ID=gene656;Name=SFV_RS03290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03290;old_locus_tag=SFV_0594 NC_008258.1 Protein Homology CDS 619965 620756 . - 0 ID=cds645;Parent=gene656;Dbxref=Genbank:WP_000097557.1;Name=WP_000097557.1;Note=periplasmic protein that interacts with TolA%3B the tol-pal system is probably involved in maintaining cell envelope integrity;gbkey=CDS;product=tol-pal system protein YbgF;protein_id=WP_000097557.1;transl_table=11 NC_008258.1 RefSeq gene 620766 621287 . - . ID=gene657;Name=SFV_RS03295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03295;old_locus_tag=SFV_0595 NC_008258.1 Protein Homology CDS 620766 621287 . - 0 ID=cds646;Parent=gene657;Dbxref=Genbank:WP_001295306.1;Name=WP_001295306.1;gbkey=CDS;product=peptidoglycan-associated lipoprotein;protein_id=WP_001295306.1;transl_table=11 NC_008258.1 RefSeq gene 621322 622614 . - . ID=gene658;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=SFV_RS03300;old_locus_tag=SFV_0596 NC_008258.1 Protein Homology CDS 621322 622614 . - 0 ID=cds647;Parent=gene658;Dbxref=Genbank:WP_001481358.1;Name=WP_001481358.1;Note=forms dimers%3B may be involved in cell envelope integrity%3B interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA;gbkey=CDS;gene=tolB;product=protein TolB;protein_id=WP_001481358.1;transl_table=11 NC_008258.1 RefSeq gene 622747 623988 . - . ID=gene659;Name=tolA;gbkey=Gene;gene=tolA;gene_biotype=protein_coding;locus_tag=SFV_RS03305;old_locus_tag=SFV_0597 NC_008258.1 Protein Homology CDS 622747 623988 . - 0 ID=cds648;Parent=gene659;Dbxref=Genbank:WP_000030694.1;Name=WP_000030694.1;Note=inner membrane component of 7 member Tol-Pal envelope-spanning complex%3B involved in maintaining cell envelope integrity%3B utilized by colicins and filamentous phages for import%3B interacts with TolB%2C Pal%2C and through TolB to various outer membrane porins;gbkey=CDS;gene=tolA;product=cell envelope integrity/translocation protein TolA;protein_id=WP_000030694.1;transl_table=11 NC_008258.1 RefSeq gene 624053 624481 . - . ID=gene660;Name=SFV_RS03310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03310;old_locus_tag=SFV_0598 NC_008258.1 Protein Homology CDS 624053 624481 . - 0 ID=cds649;Parent=gene660;Dbxref=Genbank:WP_000090097.1;Name=WP_000090097.1;Note=membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins;gbkey=CDS;product=protein TolR;protein_id=WP_000090097.1;transl_table=11 NC_008258.1 RefSeq gene 624485 625168 . - . ID=gene661;Name=SFV_RS03315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03315;old_locus_tag=SFV_0599 NC_008258.1 Protein Homology CDS 624485 625168 . - 0 ID=cds650;Parent=gene661;Dbxref=Genbank:WP_001307062.1;Name=WP_001307062.1;Note=membrane spanning protein in TolA-TolQ-TolR complex%3B involved in the tonB-independent uptake of group A colicins;gbkey=CDS;product=colicin transporter;protein_id=WP_001307062.1;transl_table=11 NC_008258.1 RefSeq gene 625174 625578 . - . ID=gene662;Name=SFV_RS03320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03320;old_locus_tag=SFV_0600 NC_008258.1 Protein Homology CDS 625174 625578 . - 0 ID=cds651;Parent=gene662;Dbxref=Genbank:WP_001098382.1;Name=WP_001098382.1;Note=catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters%3B physiological role remains unknown%3B involved in phospholipid metabolism%3B part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_001098382.1;transl_table=11 NC_008258.1 RefSeq gene 625728 626021 . - . ID=gene663;Name=SFV_RS03325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03325;old_locus_tag=SFV_0601 NC_008258.1 Protein Homology CDS 625728 626021 . - 0 ID=cds652;Parent=gene663;Dbxref=Genbank:WP_000034602.1;Name=WP_000034602.1;gbkey=CDS;product=cyd operon protein YbgE;protein_id=WP_000034602.1;transl_table=11 NC_008258.1 RefSeq gene 626021 626134 . - . ID=gene664;Name=SFV_RS03330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03330 NC_008258.1 Protein Homology CDS 626021 626134 . - 0 ID=cds653;Parent=gene664;Dbxref=Genbank:WP_000270282.1;Name=WP_000270282.1;gbkey=CDS;product=cytochrome bd-I ubiquinol oxidase subunit X;protein_id=WP_000270282.1;transl_table=11 NC_008258.1 RefSeq gene 626149 627288 . - . ID=gene665;Name=SFV_RS03335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03335;old_locus_tag=SFV_0602 NC_008258.1 Protein Homology CDS 626149 627288 . - 0 ID=cds654;Parent=gene665;Dbxref=Genbank:WP_000568274.1;Name=WP_000568274.1;gbkey=CDS;product=cytochrome BD oxidase subunit II;protein_id=WP_000568274.1;transl_table=11 NC_008258.1 RefSeq gene 627304 628872 . - . ID=gene666;Name=SFV_RS03340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03340;old_locus_tag=SFV_0603 NC_008258.1 Protein Homology CDS 627304 628872 . - 0 ID=cds655;Parent=gene666;Dbxref=Genbank:WP_000884364.1;Name=WP_000884364.1;Note=part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone;gbkey=CDS;product=cytochrome BD oxidase subunit I;protein_id=WP_000884364.1;transl_table=11 NC_008258.1 RefSeq gene 629470 629697 . - . ID=gene667;Name=SFV_RS03345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03345 NC_008258.1 Protein Homology CDS 629470 629697 . - 0 ID=cds656;Parent=gene667;Dbxref=Genbank:WP_024260237.1;Name=WP_024260237.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260237.1;transl_table=11 NC_008258.1 RefSeq gene 629722 632355 . - . ID=gene668;Name=SFV_RS03350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03350;old_locus_tag=SFV_0604 NC_008258.1 Protein Homology CDS 629722 632355 . - 0 ID=cds657;Parent=gene668;Dbxref=Genbank:WP_000648951.1;Name=WP_000648951.1;gbkey=CDS;product=alpha-mannosidase;protein_id=WP_000648951.1;transl_table=11 NC_008258.1 RefSeq gene 632373 634289 . - . ID=gene669;Name=SFV_RS03355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03355;pseudo=true NC_008258.1 Protein Homology CDS 632373 634289 . - 0 ID=cds658;Parent=gene669;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS 2-O-a-mannosyl-D-glycerate transporter subunit IIABC;pseudo=true;transl_except=(pos:complement(632949..632951)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 634459 635181 . + . ID=gene670;Name=SFV_RS03360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03360;old_locus_tag=SFV_0606 NC_008258.1 Protein Homology CDS 634459 635181 . + 0 ID=cds659;Parent=gene670;Dbxref=Genbank:WP_000509906.1;Name=WP_000509906.1;Note=regulates the succiny-lCoA synthetase operon;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_000509906.1;transl_table=11 NC_008258.1 RefSeq gene 635284 636153 . - . ID=gene671;Name=SFV_RS03365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03365;old_locus_tag=SFV_0607 NC_008258.1 Protein Homology CDS 635284 636153 . - 0 ID=cds660;Parent=gene671;Dbxref=Genbank:WP_000025451.1;Name=WP_000025451.1;Note=Catalyzes the only substrate-level phosphorylation in the TCA cycle;gbkey=CDS;product=succinyl-CoA synthetase subunit alpha;protein_id=WP_000025451.1;transl_table=11 NC_008258.1 RefSeq gene 636153 637319 . - . ID=gene672;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=SFV_RS03370;old_locus_tag=SFV_0608 NC_008258.1 Protein Homology CDS 636153 637319 . - 0 ID=cds661;Parent=gene672;Dbxref=Genbank:WP_001048597.1;Name=WP_001048597.1;Note=catalyzes the interconversion of succinyl-CoA and succinate;gbkey=CDS;gene=sucC;product=succinyl-CoA ligase subunit beta;protein_id=WP_001048597.1;transl_table=11 NC_008258.1 RefSeq gene 637413 638630 . - . ID=gene673;Name=SFV_RS03375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03375;old_locus_tag=SFV_0609 NC_008258.1 Protein Homology CDS 637413 638630 . - 0 ID=cds662;Parent=gene673;Dbxref=Genbank:WP_000099818.1;Name=WP_000099818.1;Note=component of 2-oxoglutarate dehydrogenase complex%3B catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA;gbkey=CDS;product=dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex;protein_id=WP_000099818.1;transl_table=11 NC_008258.1 RefSeq gene 638645 641446 . - . ID=gene674;Name=SFV_RS03380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03380;old_locus_tag=SFV_0610 NC_008258.1 Protein Homology CDS 638645 641446 . - 0 ID=cds663;Parent=gene674;Dbxref=Genbank:WP_000551876.1;Name=WP_000551876.1;gbkey=CDS;product=2-oxoglutarate dehydrogenase E1;protein_id=WP_000551876.1;transl_table=11 NC_008258.1 RefSeq gene 641428 641688 . - . ID=gene675;Name=SFV_RS03385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03385 NC_008258.1 Protein Homology CDS 641428 641688 . - 0 ID=cds664;Parent=gene675;Dbxref=Genbank:WP_044023789.1;Name=WP_044023789.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044023789.1;transl_table=11 NC_008258.1 RefSeq gene 641747 642463 . - . ID=gene676;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=SFV_RS03390;old_locus_tag=SFV_0611 NC_008258.1 Protein Homology CDS 641747 642463 . - 0 ID=cds665;Parent=gene676;Dbxref=Genbank:WP_001235263.1;Name=WP_001235263.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol%3B the catalytic subunits are similar to fumarate reductase;gbkey=CDS;gene=sdhB;product=succinate dehydrogenase iron-sulfur subunit;protein_id=WP_001235263.1;transl_table=11 NC_008258.1 RefSeq gene 642479 644245 . - . ID=gene677;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=SFV_RS03395;old_locus_tag=SFV_0612 NC_008258.1 Protein Homology CDS 642479 644245 . - 0 ID=cds666;Parent=gene677;Dbxref=Genbank:WP_000775536.1;Name=WP_000775536.1;Note=part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers)%3B SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556%3B SdhC binds ubiquinone%3B oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol;gbkey=CDS;gene=sdhA;product=succinate dehydrogenase flavoprotein subunit;protein_id=WP_000775536.1;transl_table=11 NC_008258.1 RefSeq gene 644245 644592 . - . ID=gene678;Name=sdhD;gbkey=Gene;gene=sdhD;gene_biotype=protein_coding;locus_tag=SFV_RS03400;old_locus_tag=SFV_0613 NC_008258.1 Protein Homology CDS 644245 644592 . - 0 ID=cds667;Parent=gene678;Dbxref=Genbank:WP_000254365.1;Name=WP_000254365.1;gbkey=CDS;gene=sdhD;product=succinate dehydrogenase hydrophobic membrane anchor subunit;protein_id=WP_000254365.1;transl_table=11 NC_008258.1 RefSeq gene 644586 644990 . - . ID=gene679;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=SFV_RS03405;old_locus_tag=SFV_0614 NC_008258.1 Protein Homology CDS 644586 644990 . - 0 ID=cds668;Parent=gene679;Dbxref=Genbank:WP_000263349.1;Name=WP_000263349.1;gbkey=CDS;gene=sdhC;product=succinate dehydrogenase cytochrome b556 subunit;protein_id=WP_000263349.1;transl_table=11 NC_008258.1 RefSeq gene 645511 645696 . - . ID=gene680;Name=SFV_RS03410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03410 NC_008258.1 Protein Homology CDS 645511 645696 . - 0 ID=cds669;Parent=gene680;Dbxref=Genbank:WP_005049395.1;Name=WP_005049395.1;gbkey=CDS;product=citrate synthase;protein_id=WP_005049395.1;transl_table=11 NC_008258.1 RefSeq gene 645684 646967 . + . ID=gene681;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=SFV_RS03415;old_locus_tag=SFV_0615 NC_008258.1 Protein Homology CDS 645684 646967 . + 0 ID=cds670;Parent=gene681;Dbxref=Genbank:WP_000785822.1;Name=WP_000785822.1;Note=type II enzyme%3B in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate%3B allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation%3B forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A%3B functions in TCA cycle%2C glyoxylate cycle and respiration%3B enzyme from Helicobacter pylori is not inhibited by NADH;gbkey=CDS;gene=gltA;product=type II citrate synthase;protein_id=WP_000785822.1;transl_table=11 NC_008258.1 RefSeq gene 647357 647923 . + . ID=gene682;Name=SFV_RS03420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03420;old_locus_tag=SFV_0616 NC_008258.1 Protein Homology CDS 647357 647923 . + 0 ID=cds671;Parent=gene682;Dbxref=Genbank:WP_000472417.1;Name=WP_000472417.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000472417.1;transl_table=11 NC_008258.1 RefSeq gene 647983 650433 . + . ID=gene683;Name=SFV_RS03425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03425;old_locus_tag=SFV_0617 NC_008258.1 Protein Homology CDS 647983 650433 . + 0 ID=cds672;Parent=gene683;Dbxref=Genbank:WP_024260238.1;Name=WP_024260238.1;gbkey=CDS;product=membrane protein;protein_id=WP_024260238.1;transl_table=11 NC_008258.1 RefSeq gene 650448 651179 . + . ID=gene684;Name=SFV_RS03430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03430;old_locus_tag=SFV_0618 NC_008258.1 Protein Homology CDS 650448 651179 . + 0 ID=cds673;Parent=gene684;Dbxref=Genbank:WP_000143529.1;Name=WP_000143529.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000143529.1;transl_table=11 NC_008258.1 RefSeq gene 651176 651460 . + . ID=gene685;Name=SFV_RS03435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03435 NC_008258.1 Protein Homology CDS 651176 651460 . + 0 ID=cds674;Parent=gene685;Dbxref=Genbank:WP_024260239.1;Name=WP_024260239.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260239.1;transl_table=11 NC_008258.1 RefSeq gene 651878 652117 . + . ID=gene686;Name=SFV_RS03440;end_range=652117,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03440;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 651878 652117 . + 0 ID=cds675;Parent=gene686;end_range=652117,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 652404 653450 . + . ID=gene687;Name=SFV_RS03445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03445;pseudo=true NC_008258.1 Protein Homology CDS 652404 653450 . + 0 ID=cds676;Parent=gene687;gbkey=CDS;product=AbrB family transcriptional regulator;pseudo=true;transl_except=(pos:653124..653126%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 653447 654238 . - . ID=gene688;Name=SFV_RS03450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03450;old_locus_tag=SFV_0621 NC_008258.1 Protein Homology CDS 653447 654238 . - 0 ID=cds677;Parent=gene688;Dbxref=Genbank:WP_001114016.1;Name=WP_001114016.1;Note=5-formyluracil/5-hydroxymethyluracil DNA glycosylase%3B involved in base excision repair of DNA damaged by oxidation or by mutagenic agents%3B acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines%3B has apurinic/apyrimidinic lyase activity;gbkey=CDS;product=endonuclease VII;protein_id=WP_001114016.1;transl_table=11 NC_008258.1 RefSeq gene 654274 655008 . - . ID=gene689;Name=SFV_RS03455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03455;old_locus_tag=SFV_0622 NC_008258.1 Protein Homology CDS 654274 655008 . - 0 ID=cds678;Parent=gene689;Dbxref=Genbank:WP_000687151.1;Name=WP_000687151.1;gbkey=CDS;product=LamB/YcsF family protein;protein_id=WP_000687151.1;transl_table=11 NC_008258.1 RefSeq gene 654998 655930 . - . ID=gene690;Name=SFV_RS03460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03460;pseudo=true NC_008258.1 Protein Homology CDS 654998 655930 . - 0 ID=cds679;Parent=gene690;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(655484..655486)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 655924 656580 . - . ID=gene691;Name=SFV_RS03465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03465;old_locus_tag=SFV_0624 NC_008258.1 Protein Homology CDS 655924 656580 . - 0 ID=cds680;Parent=gene691;Dbxref=Genbank:WP_001188346.1;Name=WP_001188346.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001188346.1;transl_table=11 NC_008258.1 RefSeq gene 656603 657346 . - . ID=gene692;Name=SFV_RS03470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03470;old_locus_tag=SFV_0625 NC_008258.1 Protein Homology CDS 656603 657346 . - 0 ID=cds681;Parent=gene692;Dbxref=Genbank:WP_000798874.1;Name=WP_000798874.1;gbkey=CDS;product=Nif3-like dinuclear metal center hexameric protein;protein_id=WP_000798874.1;transl_table=11 NC_008258.1 RefSeq gene 657617 659098 . + . ID=gene693;Name=SFV_RS03475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03475;old_locus_tag=SFV_0626 NC_008258.1 Protein Homology CDS 657617 659098 . + 0 ID=cds682;Parent=gene693;Dbxref=Genbank:WP_001032686.1;Name=WP_001032686.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_001032686.1;transl_table=11 NC_008258.1 RefSeq gene 659248 660666 . - . ID=gene694;Name=SFV_RS03480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03480;old_locus_tag=SFV_0627 NC_008258.1 Protein Homology CDS 659248 660666 . - 0 ID=cds683;Parent=gene694;Dbxref=Genbank:WP_000207082.1;Name=WP_000207082.1;Note=UV-induced DNA repair%3B converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers%3B light dependent;gbkey=CDS;product=deoxyribodipyrimidine photolyase;protein_id=WP_000207082.1;transl_table=11 NC_008258.1 RefSeq gene 660663 661172 . - . ID=gene695;Name=SFV_RS03485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03485;old_locus_tag=SFV_0628 NC_008258.1 Protein Homology CDS 660663 661172 . - 0 ID=cds684;Parent=gene695;Dbxref=Genbank:WP_001053303.1;Name=WP_001053303.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001053303.1;transl_table=11 NC_008258.1 RefSeq gene 661301 661588 . + . ID=gene696;Name=SFV_RS03490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03490;old_locus_tag=SFV_0629 NC_008258.1 Protein Homology CDS 661301 661588 . + 0 ID=cds685;Parent=gene696;Dbxref=Genbank:WP_000807562.1;Name=WP_000807562.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000807562.1;transl_table=11 NC_008258.1 RefSeq gene 661643 662023 . - . ID=gene697;Name=SFV_RS03495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03495 NC_008258.1 Protein Homology CDS 661643 662023 . - 0 ID=cds686;Parent=gene697;Dbxref=Genbank:WP_025715253.1;Name=WP_025715253.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_025715253.1;transl_table=11 NC_008258.1 RefSeq gene 662026 666690 . - . ID=gene698;Name=SFV_RS03500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03500;old_locus_tag=SFV_0630 NC_008258.1 Protein Homology CDS 662026 666690 . - 0 ID=cds687;Parent=gene698;Dbxref=Genbank:WP_000390554.1;Name=WP_000390554.1;gbkey=CDS;product=type IV secretion protein Rhs;protein_id=WP_000390554.1;transl_table=11 NC_008258.1 RefSeq gene 666709 666909 . - . ID=gene699;Name=SFV_RS03505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03505;old_locus_tag=SFV_0631 NC_008258.1 Protein Homology CDS 666709 666909 . - 0 ID=cds688;Parent=gene699;Dbxref=Genbank:WP_005105151.1;Name=WP_005105151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105151.1;transl_table=11 NC_008258.1 RefSeq repeat_region 667289 668061 . + . ID=id84;gbkey=repeat_region NC_008258.1 RefSeq region 667291 668058 . - . ID=id85;gbkey=mobile_element NC_008258.1 RefSeq gene 667306 667701 . - . ID=gene700;Name=SFV_RS03510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03510 NC_008258.1 Protein Homology CDS 667306 667701 . - 0 ID=cds689;Parent=gene700;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 667728 667952 . - . ID=gene701;Name=SFV_RS03515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03515 NC_008258.1 Protein Homology CDS 667728 667952 . - 0 ID=cds690;Parent=gene701;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 668497 668703 . - . ID=gene702;Name=SFV_RS03520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03520;old_locus_tag=SFV_0634 NC_008258.1 Protein Homology CDS 668497 668703 . - 0 ID=cds691;Parent=gene702;Dbxref=Genbank:WP_000424924.1;Name=WP_000424924.1;gbkey=CDS;product=DUF2517 domain-containing protein;protein_id=WP_000424924.1;transl_table=11 NC_008258.1 RefSeq gene 669016 669105 . + . ID=gene703;Name=kdpF;gbkey=Gene;gene=kdpF;gene_biotype=protein_coding;locus_tag=SFV_RS03525 NC_008258.1 Protein Homology CDS 669016 669105 . + 0 ID=cds692;Parent=gene703;Dbxref=Genbank:WP_001365534.1;Name=WP_001365534.1;Note=one of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;gene=kdpF;product=protein KdpF;protein_id=WP_001365534.1;transl_table=11 NC_008258.1 RefSeq gene 669105 670754 . + . ID=gene704;Name=SFV_RS03530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03530;old_locus_tag=SFV_0635 NC_008258.1 Protein Homology CDS 669105 670754 . + 0 ID=cds693;Parent=gene704;Dbxref=Genbank:WP_000730085.1;Name=WP_000730085.1;Note=catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;gbkey=CDS;product=potassium-transporting ATPase subunit A;protein_id=WP_000730085.1;transl_table=11 NC_008258.1 RefSeq gene 670777 672824 . + . ID=gene705;Name=SFV_RS03535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03535;pseudo=true NC_008258.1 Protein Homology CDS 670777 672824 . + 0 ID=cds694;Parent=gene705;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP) system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions;exception=annotated by transcript or proteomic data;gbkey=CDS;product=potassium-transporting ATPase subunit B;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 672833 673405 . + . ID=gene706;Name=SFV_RS03540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03540;old_locus_tag=SFV_0637 NC_008258.1 Protein Homology CDS 672833 673405 . + 0 ID=cds695;Parent=gene706;Dbxref=Genbank:WP_000016100.1;Name=WP_000016100.1;Note=One of the components of the high-affinity ATP-driven potassium transport (or KDP)system%2C which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex;gbkey=CDS;product=potassium-transporting ATPase C chain;protein_id=WP_000016100.1;transl_table=11 NC_008258.1 RefSeq gene 673398 676081 . + . ID=gene707;Name=SFV_RS03545;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03545;pseudo=true NC_008258.1 Protein Homology CDS 673398 676081 . + 0 ID=cds696;Parent=gene707;Note=sensory histidine kinase in two-component regulatory system with KdpE%3B signal sensing protein;exception=annotated by transcript or proteomic data;gbkey=CDS;product=sensor protein KdpD;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 676078 676755 . + . ID=gene708;Name=SFV_RS03550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03550;old_locus_tag=SFV_0639 NC_008258.1 Protein Homology CDS 676078 676755 . + 0 ID=cds697;Parent=gene708;Dbxref=Genbank:WP_000186088.1;Name=WP_000186088.1;Note=response regulator in two-component regulatory system with KdpD%3B regulates the kdp operon involved in potassium transport;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000186088.1;transl_table=11 NC_008258.1 RefSeq gene 676777 676911 . - . ID=gene709;Name=SFV_RS03555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03555;old_locus_tag=SFV_0640 NC_008258.1 Protein Homology CDS 676777 676911 . - 0 ID=cds698;Parent=gene709;Dbxref=Genbank:WP_001325427.1;Name=WP_001325427.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001325427.1;transl_table=11 NC_008258.1 RefSeq gene 677445 679642 . + . ID=gene710;Name=SFV_RS03560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03560;pseudo=true NC_008258.1 Protein Homology CDS 677445 679642 . + 0 ID=cds699;Parent=gene710;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ornithine decarboxylase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 679639 680958 . + . ID=gene711;Name=potE;gbkey=Gene;gene=potE;gene_biotype=protein_coding;locus_tag=SFV_RS03565;old_locus_tag=SFV_0642 NC_008258.1 Protein Homology CDS 679639 680958 . + 0 ID=cds700;Parent=gene711;Dbxref=Genbank:WP_000075817.1;Name=WP_000075817.1;Note=catalyzes the uptake of putrescine via a proton symport mechanism%2C as well as the efflux of putrescine by a putrescine/ornithine antiport system;gbkey=CDS;gene=potE;product=putrescine transporter;protein_id=WP_000075817.1;transl_table=11 NC_008258.1 RefSeq gene 681014 682654 . - . ID=gene712;Name=SFV_RS03570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03570;old_locus_tag=SFV_0643 NC_008258.1 Protein Homology CDS 681014 682654 . - 0 ID=cds701;Parent=gene712;Dbxref=Genbank:WP_000974364.1;Name=WP_000974364.1;Note=catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate;gbkey=CDS;product=phosphoglucomutase;protein_id=WP_000974364.1;transl_table=11 NC_008258.1 RefSeq gene 682680 683225 . - . ID=gene713;Name=SFV_RS03575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03575;old_locus_tag=SFV_0644 NC_008258.1 Protein Homology CDS 682680 683225 . - 0 ID=cds702;Parent=gene713;Dbxref=Genbank:WP_024260240.1;Name=WP_024260240.1;Note=negative modulator of the initiation of chromosome replication;gbkey=CDS;product=replication initiation regulator SeqA;protein_id=WP_024260240.1;transl_table=11 NC_008258.1 RefSeq gene 683411 684175 . + . ID=gene714;Name=SFV_RS03580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03580;old_locus_tag=SFV_0645 NC_008258.1 Protein Homology CDS 683411 684175 . + 0 ID=cds703;Parent=gene714;Dbxref=Genbank:WP_000773301.1;Name=WP_000773301.1;gbkey=CDS;product=acyl-CoA esterase;protein_id=WP_000773301.1;transl_table=11 NC_008258.1 RefSeq gene 684315 684608 . + . ID=gene715;Name=SFV_RS03585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03585;old_locus_tag=SFV_0646 NC_008258.1 Protein Homology CDS 684315 684608 . + 0 ID=cds704;Parent=gene715;Dbxref=Genbank:WP_001300829.1;Name=WP_001300829.1;gbkey=CDS;product=LexA-regulated protein%2C CopB family;protein_id=WP_001300829.1;transl_table=11 NC_008258.1 RefSeq gene 684748 685278 . + . ID=gene716;Name=SFV_RS03590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03590;old_locus_tag=SFV_0647 NC_008258.1 Protein Homology CDS 684748 685278 . + 0 ID=cds705;Parent=gene716;Dbxref=Genbank:WP_001018618.1;Name=WP_001018618.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin-1;protein_id=WP_001018618.1;transl_table=11 NC_008258.1 RefSeq gene 685268 685523 . - . ID=gene717;Name=SFV_RS03595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03595;pseudo=true NC_008258.1 Protein Homology CDS 685268 685523 . - 0 ID=cds706;Parent=gene717;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 685489 685575 . + . ID=gene718;Name=SFV_RS03600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03600 NC_008258.1 Protein Homology CDS 685489 685575 . + 0 ID=cds707;Parent=gene718;Dbxref=Genbank:WP_001406816.1;Name=WP_001406816.1;gbkey=CDS;product=Fur leader peptide;protein_id=WP_001406816.1;transl_table=11 NC_008258.1 RefSeq gene 685568 686014 . + . ID=gene719;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=SFV_RS03605;old_locus_tag=SFV_0648 NC_008258.1 Protein Homology CDS 685568 686014 . + 0 ID=cds708;Parent=gene719;Dbxref=Genbank:WP_000131702.1;Name=WP_000131702.1;Note=negatively regulates a number of operons that encode enzymes involved in iron transport%3B activated by manganese%3B forms a homodimer;gbkey=CDS;gene=fur;product=ferric uptake regulation protein;protein_id=WP_000131702.1;transl_table=11 NC_008258.1 RefSeq gene 686098 686424 . - . ID=gene720;Name=SFV_RS03610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03610;old_locus_tag=SFV_0649 NC_008258.1 Protein Homology CDS 686098 686424 . - 0 ID=cds709;Parent=gene720;Dbxref=Genbank:WP_024260241.1;Name=WP_024260241.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260241.1;transl_table=11 NC_008258.1 RefSeq gene 686461 687867 . - . ID=gene721;Name=chiP;gbkey=Gene;gene=chiP;gene_biotype=protein_coding;locus_tag=SFV_RS03615;old_locus_tag=SFV_0650 NC_008258.1 Protein Homology CDS 686461 687867 . - 0 ID=cds710;Parent=gene721;Dbxref=Genbank:WP_001258822.1;Name=WP_001258822.1;Note=outer membrane porin involved in the transport of chitooligosaccharides;gbkey=CDS;gene=chiP;product=chitoporin;protein_id=WP_001258822.1;transl_table=11 NC_008258.1 RefSeq repeat_region 688268 688371 . + . ID=id86;gbkey=repeat_region NC_008258.1 RefSeq gene 688446 690110 . - . ID=gene722;Name=SFV_RS03620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03620;old_locus_tag=SFV_0651 NC_008258.1 Protein Homology CDS 688446 690110 . - 0 ID=cds711;Parent=gene722;Dbxref=Genbank:WP_001287126.1;Name=WP_001287126.1;Note=catalyzes a two-step reaction%2C first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;product=glutamine--tRNA ligase;protein_id=WP_001287126.1;transl_table=11 NC_008258.1 RefSeq gene 690313 692259 . - . ID=gene723;Name=SFV_RS03625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03625;old_locus_tag=SFV_0652 NC_008258.1 Protein Homology CDS 690313 692259 . - 0 ID=cds712;Parent=gene723;Dbxref=Genbank:WP_001023095.1;Name=WP_001023095.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS N-acetylglucosamine EIICBA component;protein_id=WP_001023095.1;transl_table=11 NC_008258.1 RefSeq gene 692592 693392 . + . ID=gene724;Name=nagB;gbkey=Gene;gene=nagB;gene_biotype=protein_coding;locus_tag=SFV_RS03630;old_locus_tag=SFV_0653 NC_008258.1 Protein Homology CDS 692592 693392 . + 0 ID=cds713;Parent=gene724;Dbxref=Genbank:WP_001237076.1;Name=WP_001237076.1;Note=catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate;gbkey=CDS;gene=nagB;product=glucosamine-6-phosphate deaminase;protein_id=WP_001237076.1;transl_table=11 NC_008258.1 RefSeq gene 693452 694600 . + . ID=gene725;Name=nagA;gbkey=Gene;gene=nagA;gene_biotype=protein_coding;locus_tag=SFV_RS03635;old_locus_tag=SFV_0654 NC_008258.1 Protein Homology CDS 693452 694600 . + 0 ID=cds714;Parent=gene725;Dbxref=Genbank:WP_000271152.1;Name=WP_000271152.1;Note=catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate;gbkey=CDS;gene=nagA;product=N-acetylglucosamine-6-phosphate deacetylase;protein_id=WP_000271152.1;transl_table=11 NC_008258.1 RefSeq gene 694609 695829 . + . ID=gene726;Name=SFV_RS03640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03640;old_locus_tag=SFV_0655 NC_008258.1 Protein Homology CDS 694609 695829 . + 0 ID=cds715;Parent=gene726;Dbxref=Genbank:WP_000187594.1;Name=WP_000187594.1;Note=regulates the synthesis of glucosamine and N-acetylglucosamine by acting as a repressor of the nagEBACD operon and both a repressor and activator of the glmSU operon;gbkey=CDS;product=N-acetylglucosamine repressor;protein_id=WP_000187594.1;transl_table=11 NC_008258.1 RefSeq gene 695877 696629 . + . ID=gene727;Name=SFV_RS03645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03645;old_locus_tag=SFV_0656 NC_008258.1 Protein Homology CDS 695877 696629 . + 0 ID=cds716;Parent=gene727;Dbxref=Genbank:WP_000153129.1;Name=WP_000153129.1;gbkey=CDS;product=ribonucleotide monophosphatase NagD;protein_id=WP_000153129.1;transl_table=11 NC_008258.1 RefSeq gene 697026 698690 . + . ID=gene728;Name=asnB;gbkey=Gene;gene=asnB;gene_biotype=protein_coding;locus_tag=SFV_RS03650;old_locus_tag=SFV_0657 NC_008258.1 Protein Homology CDS 697026 698690 . + 0 ID=cds717;Parent=gene728;Dbxref=Genbank:WP_000337088.1;Name=WP_000337088.1;Note=functions in asparagine biosynthesis%3B converts glutamine%2C aspartate%2C ATP%2C and water to glutamate%2C asparagine%2C pyrophosphate and AMP;gbkey=CDS;gene=asnB;product=asparagine synthetase B [glutamine-hydrolyzing];protein_id=WP_000337088.1;transl_table=11 NC_008258.1 RefSeq gene 699071 699147 . + . ID=gene729;Name=SFV_RS03655;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03655;old_locus_tag=SFV_0658 NC_008258.1 tRNAscan-SE tRNA 699071 699147 . + . ID=rna11;Parent=gene729;anticodon=(pos:699105..699107);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 699071 699147 . + . ID=id87;Parent=rna11;anticodon=(pos:699105..699107);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 699157 699241 . + . ID=gene730;Name=SFV_RS03660;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03660;old_locus_tag=SFV_0659 NC_008258.1 tRNAscan-SE tRNA 699157 699241 . + . ID=rna12;Parent=gene730;anticodon=(pos:699191..699193);gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 699157 699241 . + . ID=id88;Parent=rna12;anticodon=(pos:699191..699193);gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 699265 699339 . + . ID=gene731;Name=SFV_RS03665;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03665;old_locus_tag=SFV_0660 NC_008258.1 tRNAscan-SE tRNA 699265 699339 . + . ID=rna13;Parent=gene731;anticodon=(pos:699297..699299);gbkey=tRNA;product=tRNA-Gln NC_008258.1 tRNAscan-SE exon 699265 699339 . + . ID=id89;Parent=rna13;anticodon=(pos:699297..699299);gbkey=tRNA;product=tRNA-Gln NC_008258.1 RefSeq gene 699374 699448 . + . ID=gene732;Name=SFV_RS03670;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03670;old_locus_tag=SFV_0661 NC_008258.1 tRNAscan-SE tRNA 699374 699448 . + . ID=rna14;Parent=gene732;anticodon=(pos:699406..699408);gbkey=tRNA;product=tRNA-Gln NC_008258.1 tRNAscan-SE exon 699374 699448 . + . ID=id90;Parent=rna14;anticodon=(pos:699406..699408);gbkey=tRNA;product=tRNA-Gln NC_008258.1 RefSeq gene 699464 699540 . + . ID=gene733;Name=SFV_RS03675;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03675;old_locus_tag=SFV_0662 NC_008258.1 tRNAscan-SE tRNA 699464 699540 . + . ID=rna15;Parent=gene733;anticodon=(pos:699498..699500);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 699464 699540 . + . ID=id91;Parent=rna15;anticodon=(pos:699498..699500);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 699589 699663 . + . ID=gene734;Name=SFV_RS03680;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03680;old_locus_tag=SFV_0663 NC_008258.1 tRNAscan-SE tRNA 699589 699663 . + . ID=rna16;Parent=gene734;anticodon=(pos:699621..699623);gbkey=tRNA;product=tRNA-Gln NC_008258.1 tRNAscan-SE exon 699589 699663 . + . ID=id92;Parent=rna16;anticodon=(pos:699621..699623);gbkey=tRNA;product=tRNA-Gln NC_008258.1 RefSeq gene 699701 699775 . + . ID=gene735;Name=SFV_RS03685;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS03685;old_locus_tag=SFV_0664 NC_008258.1 tRNAscan-SE tRNA 699701 699775 . + . ID=rna17;Parent=gene735;anticodon=(pos:699733..699735);gbkey=tRNA;product=tRNA-Gln NC_008258.1 tRNAscan-SE exon 699701 699775 . + . ID=id93;Parent=rna17;anticodon=(pos:699733..699735);gbkey=tRNA;product=tRNA-Gln NC_008258.1 RefSeq gene 699929 701104 . - . ID=gene736;Name=ubiF;gbkey=Gene;gene=ubiF;gene_biotype=protein_coding;gene_synonym=yleB;locus_tag=SFV_RS03690;old_locus_tag=SFV_0665 NC_008258.1 Protein Homology CDS 699929 701104 . - 0 ID=cds718;Parent=gene736;Dbxref=Genbank:WP_000184589.1;Name=WP_000184589.1;Note=catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1%2C4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol%3B functions in the biosynthesis of ubiquinone or coenzyme Q;gbkey=CDS;gene=ubiF;product=2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase;protein_id=WP_000184589.1;transl_table=11 NC_008258.1 RefSeq gene 701250 702674 . + . ID=gene737;Name=SFV_RS03695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03695;old_locus_tag=SFV_0666 NC_008258.1 Protein Homology CDS 701250 702674 . + 0 ID=cds719;Parent=gene737;Dbxref=Genbank:WP_000162739.1;Name=WP_000162739.1;Note=catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A);gbkey=CDS;product=tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase;protein_id=WP_000162739.1;transl_table=11 NC_008258.1 RefSeq gene 702827 703867 . + . ID=gene738;Name=SFV_RS03700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03700;old_locus_tag=SFV_0667 NC_008258.1 Protein Homology CDS 702827 703867 . + 0 ID=cds720;Parent=gene738;Dbxref=Genbank:WP_001018040.1;Name=WP_001018040.1;gbkey=CDS;product=phoH-like protein;protein_id=WP_001018040.1;transl_table=11 NC_008258.1 RefSeq gene 703864 704331 . + . ID=gene739;Name=SFV_RS03705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03705;old_locus_tag=SFV_0668 NC_008258.1 Protein Homology CDS 703864 704331 . + 0 ID=cds721;Parent=gene739;Dbxref=Genbank:WP_000084469.1;Name=WP_000084469.1;gbkey=CDS;product=endoribonuclease YbeY;protein_id=WP_000084469.1;transl_table=11 NC_008258.1 RefSeq gene 704421 705299 . + . ID=gene740;Name=SFV_RS03710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03710;old_locus_tag=SFV_0669 NC_008258.1 Protein Homology CDS 704421 705299 . + 0 ID=cds722;Parent=gene740;Dbxref=Genbank:WP_001278605.1;Name=WP_001278605.1;Note=involved in the transport of magnesium and cobalt ions;gbkey=CDS;product=magnesium and cobalt efflux protein CorC;protein_id=WP_001278605.1;transl_table=11 NC_008258.1 RefSeq gene 705324 706862 . + . ID=gene741;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=SFV_RS03715;old_locus_tag=SFV_0670 NC_008258.1 Protein Homology CDS 705324 706862 . + 0 ID=cds723;Parent=gene741;Dbxref=Genbank:WP_000853041.1;Name=WP_000853041.1;Note=Transfers the fatty acyl group on membrane lipoproteins;gbkey=CDS;gene=lnt;product=apolipoprotein N-acyltransferase;protein_id=WP_000853041.1;transl_table=11 NC_008258.1 RefSeq gene 707259 708167 . + . ID=gene742;Name=SFV_RS03720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03720;old_locus_tag=SFV_0671 NC_008258.1 Protein Homology CDS 707259 708167 . + 0 ID=cds724;Parent=gene742;Dbxref=Genbank:WP_001177084.1;Name=WP_001177084.1;gbkey=CDS;product=glutamate/aspartate ABC transporter substrate-binding protein;protein_id=WP_001177084.1;transl_table=11 NC_008258.1 RefSeq gene 708337 709077 . + . ID=gene743;Name=SFV_RS03725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03725;old_locus_tag=SFV_0672 NC_008258.1 Protein Homology CDS 708337 709077 . + 0 ID=cds725;Parent=gene743;Dbxref=Genbank:WP_000020953.1;Name=WP_000020953.1;Note=with GltIKL is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate/aspartate ABC transporter permease GltJ;protein_id=WP_000020953.1;transl_table=11 NC_008258.1 RefSeq gene 709077 709751 . + . ID=gene744;Name=SFV_RS03730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03730;old_locus_tag=SFV_0673 NC_008258.1 Protein Homology CDS 709077 709751 . + 0 ID=cds726;Parent=gene744;Dbxref=Genbank:WP_000272831.1;Name=WP_000272831.1;Note=with GltJLPS and GadC for glutamate and GltJLP%2C DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate;gbkey=CDS;product=glutamate/aspartate transporter permease GltK;protein_id=WP_000272831.1;transl_table=11 NC_008258.1 RefSeq gene 709751 710476 . + . ID=gene745;Name=artP;gbkey=Gene;gene=artP;gene_biotype=protein_coding;locus_tag=SFV_RS03735;old_locus_tag=SFV_0674 NC_008258.1 Protein Homology CDS 709751 710476 . + 0 ID=cds727;Parent=gene745;Dbxref=Genbank:WP_000631382.1;Name=WP_000631382.1;Note=With ArtMQJI transports arginine across the inner membrane;gbkey=CDS;gene=artP;product=glutamate/aspartate ABC transporter ATP-binding protein;protein_id=WP_000631382.1;transl_table=11 NC_008258.1 RefSeq gene 710594 711529 . + . ID=gene746;Name=rihA;gbkey=Gene;gene=rihA;gene_biotype=protein_coding;locus_tag=SFV_RS03740;old_locus_tag=SFV_0675 NC_008258.1 Protein Homology CDS 710594 711529 . + 0 ID=cds728;Parent=gene746;Dbxref=Genbank:WP_001207526.1;Name=WP_001207526.1;Note=Hydrolyzes with equal efficiency cytidine or uridine to ribose and cytosine or uracil%2C respectively%3B pyrimidine-specific;gbkey=CDS;gene=rihA;product=pyrimidine-specific ribonucleoside hydrolase RihA;protein_id=WP_001207526.1;transl_table=11 NC_008258.1 RefSeq gene 711613 713283 . + . ID=gene747;Name=SFV_RS03745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03745;old_locus_tag=SFV_0676 NC_008258.1 Protein Homology CDS 711613 713283 . + 0 ID=cds729;Parent=gene747;Dbxref=Genbank:WP_000367847.1;Name=WP_000367847.1;gbkey=CDS;product=molecular chaperone HscC;protein_id=WP_000367847.1;transl_table=11 NC_008258.1 RefSeq gene 713343 714794 . - . ID=gene748;Name=SFV_RS03750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03750;old_locus_tag=SFV_0677 NC_008258.1 Protein Homology CDS 713343 714794 . - 0 ID=cds730;Parent=gene748;Dbxref=Genbank:WP_005049464.1;Name=WP_005049464.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005049464.1;transl_table=11 NC_008258.1 RefSeq gene 714791 715498 . - . ID=gene749;Name=SFV_RS03755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03755;old_locus_tag=SFV_0678 NC_008258.1 Protein Homology CDS 714791 715498 . - 0 ID=cds731;Parent=gene749;Dbxref=Genbank:WP_001030938.1;Name=WP_001030938.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001030938.1;transl_table=11 NC_008258.1 RefSeq gene 715600 716154 . + . ID=gene750;Name=SFV_RS03760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03760;old_locus_tag=SFV_0679 NC_008258.1 Protein Homology CDS 715600 716154 . + 0 ID=cds732;Parent=gene750;Dbxref=Genbank:WP_001035667.1;Name=WP_001035667.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001035667.1;transl_table=11 NC_008258.1 RefSeq gene 716164 717591 . - . ID=gene751;Name=SFV_RS03765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03765;old_locus_tag=SFV_0680 NC_008258.1 Protein Homology CDS 716164 717591 . - 0 ID=cds733;Parent=gene751;Dbxref=Genbank:WP_000786582.1;Name=WP_000786582.1;gbkey=CDS;product=molecular chaperone DnaJ;protein_id=WP_000786582.1;transl_table=11 NC_008258.1 RefSeq gene 717588 718295 . - . ID=gene752;Name=SFV_RS03770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03770;old_locus_tag=SFV_0681 NC_008258.1 Protein Homology CDS 717588 718295 . - 0 ID=cds734;Parent=gene752;Dbxref=Genbank:WP_000367139.1;Name=WP_000367139.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000367139.1;transl_table=11 NC_008258.1 RefSeq gene 718459 719436 . + . ID=gene753;Name=SFV_RS03775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03775;old_locus_tag=SFV_0682 NC_008258.1 Protein Homology CDS 718459 719436 . + 0 ID=cds735;Parent=gene753;Dbxref=Genbank:WP_000578172.1;Name=WP_000578172.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000578172.1;transl_table=11 NC_008258.1 RefSeq gene 719506 719988 . - . ID=gene754;Name=SFV_RS03780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03780;old_locus_tag=SFV_0683 NC_008258.1 Protein Homology CDS 719506 719988 . - 0 ID=cds736;Parent=gene754;Dbxref=Genbank:WP_001044870.1;Name=WP_001044870.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001044870.1;transl_table=11 NC_008258.1 RefSeq gene 720223 722805 . + . ID=gene755;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=SFV_RS03785;old_locus_tag=SFV_0684 NC_008258.1 Protein Homology CDS 720223 722805 . + 0 ID=cds737;Parent=gene755;Dbxref=Genbank:WP_001157877.1;Name=WP_001157877.1;Note=leucine--tRNA ligase%3B LeuRS%3B class-I aminoacyl-tRNA synthetase%3B charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA%3B due to the large number of codons that tRNA(Leu) recognizes%2C the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA%2C but instead recognition is dependent on a conserved discriminator base A37 and a long arm%3B an editing domain hydrolyzes misformed products%3B in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase;gbkey=CDS;gene=leuS;product=leucine--tRNA ligase;protein_id=WP_001157877.1;transl_table=11 NC_008258.1 RefSeq gene 722820 723401 . + . ID=gene756;Name=SFV_RS03790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03790;old_locus_tag=SFV_0685 NC_008258.1 Protein Homology CDS 722820 723401 . + 0 ID=cds738;Parent=gene756;Dbxref=Genbank:WP_001269672.1;Name=WP_001269672.1;Note=rare lipoprotein B%3B involved in the assembly of LPS in the outer membrane;gbkey=CDS;product=hypothetical protein;protein_id=WP_001269672.1;transl_table=11 NC_008258.1 RefSeq gene 723401 724432 . + . ID=gene757;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=SFV_RS03795;old_locus_tag=SFV_0686 NC_008258.1 Protein Homology CDS 723401 724432 . + 0 ID=cds739;Parent=gene757;Dbxref=Genbank:WP_000620546.1;Name=WP_000620546.1;Note=required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA;gbkey=CDS;gene=holA;product=DNA polymerase III subunit delta;protein_id=WP_000620546.1;transl_table=11 NC_008258.1 RefSeq gene 724434 725075 . + . ID=gene758;Name=SFV_RS03800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03800;old_locus_tag=SFV_0687 NC_008258.1 Protein Homology CDS 724434 725075 . + 0 ID=cds740;Parent=gene758;Dbxref=Genbank:WP_000838889.1;Name=WP_000838889.1;gbkey=CDS;product=nicotinate-nucleotide adenylyltransferase;protein_id=WP_000838889.1;transl_table=11 NC_008258.1 RefSeq gene 725099 725710 . + . ID=gene759;Name=SFV_RS03805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03805;old_locus_tag=SFV_0688 NC_008258.1 Protein Homology CDS 725099 725710 . + 0 ID=cds741;Parent=gene759;Dbxref=Genbank:WP_001241888.1;Name=WP_001241888.1;gbkey=CDS;product=alpha-ribazole phosphatase;protein_id=WP_001241888.1;transl_table=11 NC_008258.1 RefSeq gene 725970 726287 . + . ID=gene760;Name=SFV_RS03810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03810;old_locus_tag=SFV_0689 NC_008258.1 Protein Homology CDS 725970 726287 . + 0 ID=cds742;Parent=gene760;Dbxref=Genbank:WP_001161668.1;Name=WP_001161668.1;gbkey=CDS;product=ribosome silencing factor RsfS;protein_id=WP_001161668.1;transl_table=11 NC_008258.1 RefSeq gene 726291 726758 . + . ID=gene761;Name=SFV_RS03815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03815;old_locus_tag=SFV_0690 NC_008258.1 Protein Homology CDS 726291 726758 . + 0 ID=cds743;Parent=gene761;Dbxref=Genbank:WP_000776104.1;Name=WP_000776104.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase H;protein_id=WP_000776104.1;transl_table=11 NC_008258.1 RefSeq gene 726789 728690 . + . ID=gene762;Name=SFV_RS03820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03820;old_locus_tag=SFV_0691 NC_008258.1 Protein Homology CDS 726789 728690 . + 0 ID=cds744;Parent=gene762;Dbxref=Genbank:WP_000776196.1;Name=WP_000776196.1;gbkey=CDS;product=penicillin-binding protein 2;protein_id=WP_000776196.1;transl_table=11 NC_008258.1 RefSeq gene 728693 729805 . + . ID=gene763;Name=SFV_RS03825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03825;old_locus_tag=SFV_0692 NC_008258.1 Protein Homology CDS 728693 729805 . + 0 ID=cds745;Parent=gene763;Dbxref=Genbank:WP_000131719.1;Name=WP_000131719.1;gbkey=CDS;product=rod shape-determining protein RodA;protein_id=WP_000131719.1;transl_table=11 NC_008258.1 RefSeq gene 729816 730904 . + . ID=gene764;Name=SFV_RS03830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03830;old_locus_tag=SFV_0693 NC_008258.1 Protein Homology CDS 729816 730904 . + 0 ID=cds746;Parent=gene764;Dbxref=Genbank:WP_001231405.1;Name=WP_001231405.1;Note=septal ring protein%2C suppressor of prc%2C minor lipoprotein;gbkey=CDS;product=hypothetical protein;protein_id=WP_001231405.1;transl_table=11 NC_008258.1 RefSeq gene 731043 732254 . + . ID=gene765;Name=SFV_RS03835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03835;old_locus_tag=SFV_0694 NC_008258.1 Protein Homology CDS 731043 732254 . + 0 ID=cds747;Parent=gene765;Dbxref=Genbank:WP_001092085.1;Name=WP_001092085.1;Note=penicillin-binding protein 5%3B removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_001092085.1;transl_table=11 NC_008258.1 RefSeq gene 732365 732628 . + . ID=gene766;Name=SFV_RS03840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03840;old_locus_tag=SFV_0695 NC_008258.1 Protein Homology CDS 732365 732628 . + 0 ID=cds748;Parent=gene766;Dbxref=Genbank:WP_000850550.1;Name=WP_000850550.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000850550.1;transl_table=11 NC_008258.1 RefSeq gene 732729 733370 . + . ID=gene767;Name=SFV_RS03845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03845;old_locus_tag=SFV_0696 NC_008258.1 Protein Homology CDS 732729 733370 . + 0 ID=cds749;Parent=gene767;Dbxref=Genbank:WP_000284045.1;Name=WP_000284045.1;Note=lipoyl/octanoyltransferase%3B catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein;gbkey=CDS;product=octanoyltransferase;protein_id=WP_000284045.1;transl_table=11 NC_008258.1 RefSeq gene 733422 733571 . - . ID=gene768;Name=SFV_RS03850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03850 NC_008258.1 Protein Homology CDS 733422 733571 . - 0 ID=cds750;Parent=gene768;Dbxref=Genbank:WP_000073523.1;Name=WP_000073523.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000073523.1;transl_table=11 NC_008258.1 RefSeq gene 733629 734582 . + . ID=gene769;Name=SFV_RS03855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03855;old_locus_tag=SFV_0697 NC_008258.1 Protein Homology CDS 733629 734582 . + 0 ID=cds751;Parent=gene769;Dbxref=Genbank:WP_000378035.1;Name=WP_000378035.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000378035.1;transl_table=11 NC_008258.1 RefSeq gene 734791 735756 . + . ID=gene770;Name=SFV_RS03860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03860;old_locus_tag=SFV_0698 NC_008258.1 Protein Homology CDS 734791 735756 . + 0 ID=cds752;Parent=gene770;Dbxref=Genbank:WP_000042632.1;Name=WP_000042632.1;Note=catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group;gbkey=CDS;product=lipoyl synthase;protein_id=WP_000042632.1;transl_table=11 NC_008258.1 RefSeq gene 735857 736060 . - . ID=gene771;Name=tatE;gbkey=Gene;gene=tatE;gene_biotype=protein_coding;locus_tag=SFV_RS03865;old_locus_tag=SFV_0699 NC_008258.1 Protein Homology CDS 735857 736060 . - 0 ID=cds753;Parent=gene771;Dbxref=Genbank:WP_000503931.1;Name=WP_000503931.1;Note=TatE%3B similar to TatA and found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes;gbkey=CDS;gene=tatE;product=preprotein translocase subunit TatE;protein_id=WP_000503931.1;transl_table=11 NC_008258.1 RefSeq gene 736189 736977 . - . ID=gene772;Name=SFV_RS03870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03870;old_locus_tag=SFV_0700 NC_008258.1 Protein Homology CDS 736189 736977 . - 0 ID=cds754;Parent=gene772;Dbxref=Genbank:WP_005105166.1;Name=WP_005105166.1;gbkey=CDS;product=hydrolase;protein_id=WP_005105166.1;transl_table=11 NC_008258.1 RefSeq gene 737070 737453 . + . ID=gene773;Name=SFV_RS03875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03875;old_locus_tag=SFV_0701 NC_008258.1 Protein Homology CDS 737070 737453 . + 0 ID=cds755;Parent=gene773;Dbxref=Genbank:WP_000939741.1;Name=WP_000939741.1;Note=camphor resistance protein CrcB%3B may be involved in chromosome condensation%3B overexpression in Escherichia coli protects against decondensation by camphor%3B overexpressing the protein results in an increase in supercoiling;gbkey=CDS;product=camphor resistance protein CrcB;protein_id=WP_000939741.1;transl_table=11 NC_008258.1 RefSeq gene 737507 737716 . - . ID=gene774;Name=SFV_RS03880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03880 NC_008258.1 Protein Homology CDS 737507 737716 . - 0 ID=cds756;Parent=gene774;Dbxref=Genbank:WP_000034825.1;Name=WP_000034825.1;gbkey=CDS;product=cold-shock protein CspE;protein_id=WP_000034825.1;transl_table=11 NC_008258.1 RefSeq gene 737891 738451 . - . ID=gene775;Name=pagP;gbkey=Gene;gene=pagP;gene_biotype=protein_coding;locus_tag=SFV_RS03885;old_locus_tag=SFV_0703 NC_008258.1 Protein Homology CDS 737891 738451 . - 0 ID=cds757;Parent=gene775;Dbxref=Genbank:WP_005049488.1;Name=WP_005049488.1;Note=catalyzes the transfer of palmitate to lipid A;gbkey=CDS;gene=pagP;product=lipid A palmitoyltransferase PagP;protein_id=WP_005049488.1;transl_table=11 NC_008258.1 RefSeq gene 739040 740425 . + . ID=gene776;Name=dcuC;gbkey=Gene;gene=dcuC;gene_biotype=protein_coding;locus_tag=SFV_RS03890;old_locus_tag=SFV_0704 NC_008258.1 Protein Homology CDS 739040 740425 . + 0 ID=cds758;Parent=gene776;Dbxref=Genbank:WP_000955071.1;Name=WP_000955071.1;Note=responsible for the transport of C4-dicarboxylates during anaerobic growth;gbkey=CDS;gene=dcuC;product=anaerobic C4-dicarboxylate transporter DcuC;protein_id=WP_000955071.1;transl_table=11 NC_008258.1 RefSeq gene 740466 740807 . - . ID=gene777;Name=dpiA;end_range=740807,.;gbkey=Gene;gene=dpiA;gene_biotype=pseudogene;gene_synonym=citB;locus_tag=SFV_RS03895;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 740466 740807 . - 0 ID=cds759;Parent=gene777;Note=regulates the expression of citrate fermentation genes;end_range=740807,.;exception=unextendable partial coding region;gbkey=CDS;gene=dpiA;partial=true;product=two-component response regulator DpiA;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 741145 741654 . - . ID=gene778;Name=SFV_RS03900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03900;old_locus_tag=SFV_0706 NC_008258.1 Protein Homology CDS 741145 741654 . - 0 ID=cds760;Parent=gene778;Dbxref=Genbank:WP_000833599.1;Name=WP_000833599.1;gbkey=CDS;product=repressor;protein_id=WP_000833599.1;transl_table=11 NC_008258.1 RefSeq gene 742037 743671 . + . ID=gene779;Name=SFV_RS03905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03905;old_locus_tag=SFV_0707 NC_008258.1 Protein Homology CDS 742037 743671 . + 0 ID=cds761;Parent=gene779;Dbxref=Genbank:WP_005105168.1;Name=WP_005105168.1;gbkey=CDS;product=transposase;protein_id=WP_005105168.1;transl_table=11 NC_008258.1 RefSeq repeat_region 743666 744934 . + . ID=id94;gbkey=repeat_region NC_008258.1 RefSeq region 743669 744932 . + . ID=id95;gbkey=mobile_element NC_008258.1 RefSeq gene 743733 744035 . + . ID=gene780;Name=SFV_RS03910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03910;old_locus_tag=SFV_0708 NC_008258.1 Protein Homology CDS 743733 744035 . + 0 ID=cds762;Parent=gene780;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 744176 744889 . + . ID=gene781;Name=SFV_RS03915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03915;old_locus_tag=SFV_0709 NC_008258.1 Protein Homology CDS 744176 744889 . + 0 ID=cds763;Parent=gene781;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 744886 745131 . - . ID=gene782;Name=SFV_RS03920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03920 NC_008258.1 Protein Homology CDS 744886 745131 . - 0 ID=cds764;Parent=gene782;Dbxref=Genbank:WP_005049496.1;Name=WP_005049496.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005049496.1;transl_table=11 NC_008258.1 RefSeq gene 745173 746114 . - . ID=gene783;Name=SFV_RS03925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03925;old_locus_tag=SFV_0710 NC_008258.1 Protein Homology CDS 745173 746114 . - 0 ID=cds765;Parent=gene783;Dbxref=Genbank:WP_000627471.1;Name=WP_000627471.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000627471.1;transl_table=11 NC_008258.1 RefSeq gene 746126 746632 . - . ID=gene784;Name=SFV_RS03930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03930;old_locus_tag=SFV_0711 NC_008258.1 Protein Homology CDS 746126 746632 . - 0 ID=cds766;Parent=gene784;Dbxref=Genbank:WP_001066732.1;Name=WP_001066732.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001066732.1;transl_table=11 NC_008258.1 RefSeq gene 746636 747856 . - . ID=gene785;Name=SFV_RS03935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03935;old_locus_tag=SFV_0712 NC_008258.1 Protein Homology CDS 746636 747856 . - 0 ID=cds767;Parent=gene785;Dbxref=Genbank:WP_000873153.1;Name=WP_000873153.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000873153.1;transl_table=11 NC_008258.1 RefSeq gene 747860 748477 . - . ID=gene786;Name=SFV_RS03940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03940 NC_008258.1 Protein Homology CDS 747860 748477 . - 0 ID=cds768;Parent=gene786;Dbxref=Genbank:WP_044024282.1;Name=WP_044024282.1;gbkey=CDS;product=head morphogenesis protein;protein_id=WP_044024282.1;transl_table=11 NC_008258.1 RefSeq gene 748494 749960 . - . ID=gene787;Name=SFV_RS03945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03945;old_locus_tag=SFV_0713 NC_008258.1 Protein Homology CDS 748494 749960 . - 0 ID=cds769;Parent=gene787;Dbxref=Genbank:WP_000113496.1;Name=WP_000113496.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000113496.1;transl_table=11 NC_008258.1 RefSeq gene 749960 750706 . - . ID=gene788;Name=SFV_RS03950;end_range=750706,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03950;old_locus_tag=SFV_0714;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 749960 750706 . - 0 ID=cds770;Parent=gene788;end_range=750706,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=terminase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 750698 752033 . + . ID=id96;gbkey=repeat_region NC_008258.1 RefSeq region 750701 752031 . - . ID=id97;gbkey=mobile_element NC_008258.1 RefSeq gene 750712 751617 . - . ID=gene789;Name=SFV_RS03955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03955;old_locus_tag=SFV_0715 NC_008258.1 Protein Homology CDS 750712 751617 . - 0 ID=cds771;Parent=gene789;Dbxref=Genbank:WP_005105097.1;Name=WP_005105097.1;gbkey=CDS;product=integrase;protein_id=WP_005105097.1;transl_table=11 NC_008258.1 RefSeq gene 751575 751940 . - . ID=gene790;Name=SFV_RS03960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03960;old_locus_tag=SFV_0716 NC_008258.1 Protein Homology CDS 751575 751940 . - 0 ID=cds772;Parent=gene790;Dbxref=Genbank:WP_000567781.1;Name=WP_000567781.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567781.1;transl_table=11 NC_008258.1 RefSeq gene 752031 752699 . - . ID=gene791;Name=SFV_RS03965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03965;old_locus_tag=SFV_0717;partial=true;pseudo=true;start_range=.,752031 NC_008258.1 Protein Homology CDS 752031 752699 . - 0 ID=cds773;Parent=gene791;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=terminase;pseudo=true;start_range=.,752031;transl_table=11 NC_008258.1 RefSeq gene 752650 753414 . - . ID=gene792;Name=SFV_RS03970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03970;old_locus_tag=SFV_0718 NC_008258.1 Protein Homology CDS 752650 753414 . - 0 ID=cds774;Parent=gene792;Dbxref=Genbank:WP_001108108.1;Name=WP_001108108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001108108.1;transl_table=11 NC_008258.1 RefSeq gene 753612 754121 . + . ID=gene793;Name=SFV_RS03975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03975 NC_008258.1 Protein Homology CDS 753612 754121 . + 0 ID=cds775;Parent=gene793;Dbxref=Genbank:WP_000454800.1;Name=WP_000454800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000454800.1;transl_table=11 NC_008258.1 RefSeq gene 754210 754470 . - . ID=gene794;Name=SFV_RS03980;end_range=754470,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03980;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 754210 754470 . - 0 ID=cds776;Parent=gene794;end_range=754470,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=endopeptidase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 754230 755705 . + . ID=id98;gbkey=repeat_region NC_008258.1 RefSeq region 754456 755705 . + . ID=id99;gbkey=mobile_element NC_008258.1 RefSeq gene 754528 754830 . + . ID=gene795;Name=SFV_RS03985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03985;old_locus_tag=SFV_0719 NC_008258.1 Protein Homology CDS 754528 754830 . + 0 ID=cds777;Parent=gene795;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 755019 755697 . + . ID=gene796;Name=SFV_RS03990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS03990;old_locus_tag=SFV_0720;pseudo=true NC_008258.1 Protein Homology CDS 755019 755697 . + 0 ID=cds778;Parent=gene796;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 755703 755951 . - . ID=gene797;Name=SFV_RS03995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS03995;old_locus_tag=SFV_0721 NC_008258.1 Protein Homology CDS 755703 755951 . - 0 ID=cds779;Parent=gene797;Dbxref=Genbank:WP_000016378.1;Name=WP_000016378.1;gbkey=CDS;product=endopeptidase;protein_id=WP_000016378.1;transl_table=11 NC_008258.1 RefSeq repeat_region 755716 758959 . + . ID=id100;gbkey=repeat_region NC_008258.1 RefSeq region 755925 756205 . - . ID=id101;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq region 756205 758958 . + . ID=id102;gbkey=mobile_element NC_008258.1 RefSeq gene 756237 757838 . - . ID=gene798;Name=SFV_RS04000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04000;old_locus_tag=SFV_0723 NC_008258.1 Protein Homology CDS 756237 757838 . - 0 ID=cds780;Parent=gene798;Dbxref=Genbank:WP_011587196.1;Name=WP_011587196.1;gbkey=CDS;product=transposase;protein_id=WP_011587196.1;transl_table=11 NC_008258.1 RefSeq gene 757858 758205 . - . ID=gene799;Name=SFV_RS04005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04005;old_locus_tag=SFV_0724 NC_008258.1 Protein Homology CDS 757858 758205 . - 0 ID=cds781;Parent=gene799;Dbxref=Genbank:WP_000631712.1;Name=WP_000631712.1;gbkey=CDS;product=transposase;protein_id=WP_000631712.1;transl_table=11 NC_008258.1 RefSeq gene 758202 758876 . - . ID=gene800;Name=SFV_RS04010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04010;old_locus_tag=SFV_0725 NC_008258.1 Protein Homology CDS 758202 758876 . - 0 ID=cds782;Parent=gene800;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq gene 758930 759445 . - . ID=gene801;Name=SFV_RS04015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04015;old_locus_tag=SFV_0726 NC_008258.1 Protein Homology CDS 758930 759445 . - 0 ID=cds783;Parent=gene801;Dbxref=Genbank:WP_000075180.1;Name=WP_000075180.1;gbkey=CDS;product=lysozyme;protein_id=WP_000075180.1;transl_table=11 NC_008258.1 RefSeq repeat_region 759458 760841 . + . ID=id103;gbkey=repeat_region NC_008258.1 RefSeq region 759574 760837 . + . ID=id104;gbkey=mobile_element NC_008258.1 RefSeq gene 759638 759940 . + . ID=gene802;Name=SFV_RS04020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04020;old_locus_tag=SFV_0727 NC_008258.1 Protein Homology CDS 759638 759940 . + 0 ID=cds784;Parent=gene802;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 759976 760794 . + . ID=gene803;Name=SFV_RS04025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04025;old_locus_tag=SFV_0728 NC_008258.1 Protein Homology CDS 759976 760794 . + 0 ID=cds785;Parent=gene803;Dbxref=Genbank:WP_005098685.1;Name=WP_005098685.1;gbkey=CDS;product=transposase;protein_id=WP_005098685.1;transl_table=11 NC_008258.1 RefSeq gene 760841 760927 . - . ID=gene804;Name=SFV_RS04030;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04030;partial=true;pseudo=true;start_range=.,760841 NC_008258.1 Protein Homology CDS 760841 760927 . - 0 ID=cds786;Parent=gene804;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=holin;pseudo=true;start_range=.,760841;transl_table=11 NC_008258.1 RefSeq repeat_region 760933 762400 . + . ID=id105;gbkey=repeat_region NC_008258.1 RefSeq gene 761608 761682 . - . ID=gene805;Name=SFV_RS04035;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS04035;old_locus_tag=SFV_0729 NC_008258.1 tRNAscan-SE tRNA 761608 761682 . - . ID=rna18;Parent=gene805;anticodon=(pos:complement(761647..761649));gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 761608 761682 . - . ID=id106;Parent=rna18;anticodon=(pos:complement(761647..761649));gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 761686 761760 . - . ID=gene806;Name=SFV_RS04040;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS04040;old_locus_tag=SFV_0730 NC_008258.1 tRNAscan-SE tRNA 761686 761760 . - . ID=rna19;Parent=gene806;anticodon=(pos:complement(761725..761727));gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 761686 761760 . - . ID=id107;Parent=rna19;anticodon=(pos:complement(761725..761727));gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 761763 761839 . - . ID=gene807;Name=SFV_RS04045;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS04045;old_locus_tag=SFV_0731 NC_008258.1 tRNAscan-SE tRNA 761763 761839 . - . ID=rna20;Parent=gene807;anticodon=(pos:complement(761803..761805));gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 761763 761839 . - . ID=id108;Parent=rna20;anticodon=(pos:complement(761803..761805));gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 761841 761917 . - . ID=gene808;Name=SFV_RS04050;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS04050;old_locus_tag=SFV_0732 NC_008258.1 tRNAscan-SE tRNA 761841 761917 . - . ID=rna21;Parent=gene808;anticodon=(pos:complement(761881..761883));gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 761841 761917 . - . ID=id109;Parent=rna21;anticodon=(pos:complement(761881..761883));gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 762107 762661 . - . ID=gene809;Name=SFV_RS04055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04055 NC_008258.1 Protein Homology CDS 762107 762661 . - 0 ID=cds787;Parent=gene809;Dbxref=Genbank:WP_000640120.1;Name=WP_000640120.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000640120.1;transl_table=11 NC_008258.1 RefSeq repeat_region 762520 763549 . + . ID=id110;gbkey=repeat_region NC_008258.1 RefSeq gene 762658 762948 . - . ID=gene810;Name=SFV_RS04060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04060;old_locus_tag=SFV_0733 NC_008258.1 Protein Homology CDS 762658 762948 . - 0 ID=cds788;Parent=gene810;Dbxref=Genbank:WP_000228005.1;Name=WP_000228005.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000228005.1;transl_table=11 NC_008258.1 RefSeq gene 762948 763547 . - . ID=gene811;Name=SFV_RS04065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04065;old_locus_tag=SFV_0734 NC_008258.1 Protein Homology CDS 762948 763547 . - 0 ID=cds789;Parent=gene811;Dbxref=Genbank:WP_000940336.1;Name=WP_000940336.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000940336.1;transl_table=11 NC_008258.1 RefSeq gene 763586 763873 . - . ID=gene812;Name=SFV_RS04070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04070;old_locus_tag=SFV_0735 NC_008258.1 Protein Homology CDS 763586 763873 . - 0 ID=cds790;Parent=gene812;Dbxref=Genbank:WP_000687442.1;Name=WP_000687442.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000687442.1;transl_table=11 NC_008258.1 RefSeq gene 764123 764335 . - . ID=gene813;Name=SFV_RS04075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04075 NC_008258.1 Protein Homology CDS 764123 764335 . - 0 ID=cds791;Parent=gene813;Dbxref=Genbank:WP_000882657.1;Name=WP_000882657.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000882657.1;transl_table=11 NC_008258.1 RefSeq repeat_region 764147 764464 . + . ID=id111;gbkey=repeat_region NC_008258.1 RefSeq gene 764506 765171 . - . ID=gene814;Name=SFV_RS04080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04080;old_locus_tag=SFV_0736 NC_008258.1 Protein Homology CDS 764506 765171 . - 0 ID=cds792;Parent=gene814;Dbxref=Genbank:WP_012421537.1;Name=WP_012421537.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012421537.1;transl_table=11 NC_008258.1 RefSeq repeat_region 765254 766430 . + . ID=id112;gbkey=repeat_region NC_008258.1 RefSeq gene 765340 765696 . - . ID=gene815;Name=SFV_RS04085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04085;old_locus_tag=SFV_0737 NC_008258.1 Protein Homology CDS 765340 765696 . - 0 ID=cds793;Parent=gene815;Dbxref=Genbank:WP_005048249.1;Name=WP_005048249.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048249.1;transl_table=11 NC_008258.1 RefSeq gene 765754 766176 . - . ID=gene816;Name=SFV_RS04090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04090 NC_008258.1 Protein Homology CDS 765754 766176 . - 0 ID=cds794;Parent=gene816;Dbxref=Genbank:WP_001118167.1;Name=WP_001118167.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001118167.1;transl_table=11 NC_008258.1 RefSeq gene 766191 766937 . - . ID=gene817;Name=SFV_RS04095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04095;pseudo=true NC_008258.1 Protein Homology CDS 766191 766937 . - 0 ID=cds795;Parent=gene817;gbkey=CDS;product=DNA replication protein DnaC;pseudo=true;transl_except=(pos:complement(766596..766598)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 766686 767131 . + . ID=id113;gbkey=repeat_region NC_008258.1 RefSeq gene 766944 767721 . - . ID=gene818;Name=SFV_RS04100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04100;old_locus_tag=SFV_0739;pseudo=true NC_008258.1 Protein Homology CDS 766944 767721 . - 0 ID=cds796;Parent=gene818;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 767799 768104 . - . ID=gene819;Name=SFV_RS04105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04105;old_locus_tag=SFV_0740 NC_008258.1 Protein Homology CDS 767799 768104 . - 0 ID=cds797;Parent=gene819;Dbxref=Genbank:WP_005105172.1;Name=WP_005105172.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105172.1;transl_table=11 NC_008258.1 RefSeq gene 768206 768433 . - . ID=gene820;Name=SFV_RS04110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04110;old_locus_tag=SFV_0741 NC_008258.1 Protein Homology CDS 768206 768433 . - 0 ID=cds798;Parent=gene820;Dbxref=Genbank:WP_000912291.1;Name=WP_000912291.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000912291.1;transl_table=11 NC_008258.1 RefSeq gene 768510 768917 . + . ID=gene821;Name=SFV_RS04115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04115 NC_008258.1 Protein Homology CDS 768510 768917 . + 0 ID=cds799;Parent=gene821;Dbxref=Genbank:WP_000787424.1;Name=WP_000787424.1;Note=The transcriptional repressor of DicA (divison cell) has a hypothetical DNA binding domain. It represses the transcription of dicB and dicC%2C but its specific role in cellular replication and mode of action are still unknown.;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000787424.1;transl_table=11 NC_008258.1 RefSeq gene 769120 769274 . + . ID=gene822;Name=SFV_RS04120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04120;pseudo=true NC_008258.1 Protein Homology CDS 769120 769274 . + 0 ID=cds800;Parent=gene822;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 769276 769479 . + . ID=gene823;Name=SFV_RS04125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04125;old_locus_tag=SFV_0742 NC_008258.1 Protein Homology CDS 769276 769479 . + 0 ID=cds801;Parent=gene823;Dbxref=Genbank:WP_001005968.1;Name=WP_001005968.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001005968.1;transl_table=11 NC_008258.1 RefSeq repeat_region 769706 771043 . + . ID=id114;gbkey=repeat_region NC_008258.1 RefSeq region 769710 771040 . - . ID=id115;gbkey=mobile_element NC_008258.1 RefSeq gene 769721 770626 . - . ID=gene824;Name=SFV_RS04130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04130;old_locus_tag=SFV_0743 NC_008258.1 Protein Homology CDS 769721 770626 . - 0 ID=cds802;Parent=gene824;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 770584 770949 . - . ID=gene825;Name=SFV_RS04135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04135;old_locus_tag=SFV_0744 NC_008258.1 Protein Homology CDS 770584 770949 . - 0 ID=cds803;Parent=gene825;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 771497 772345 . + . ID=gene826;Name=SFV_RS04140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04140;old_locus_tag=SFV_0745 NC_008258.1 Protein Homology CDS 771497 772345 . + 0 ID=cds804;Parent=gene826;Dbxref=Genbank:WP_000935591.1;Name=WP_000935591.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000935591.1;transl_table=11 NC_008258.1 RefSeq repeat_region 772790 774442 . + . ID=id116;gbkey=repeat_region NC_008258.1 RefSeq region 772795 774058 . - . ID=id117;gbkey=mobile_element NC_008258.1 RefSeq gene 772838 773551 . - . ID=gene827;Name=SFV_RS04150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04150;old_locus_tag=SFV_0746 NC_008258.1 Protein Homology CDS 772838 773551 . - 0 ID=cds805;Parent=gene827;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 773692 773994 . - . ID=gene828;Name=SFV_RS04155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04155;old_locus_tag=SFV_0747 NC_008258.1 Protein Homology CDS 773692 773994 . - 0 ID=cds806;Parent=gene828;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 774060 774677 . + . ID=gene829;Name=SFV_RS04160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04160;old_locus_tag=SFV_0748 NC_008258.1 Protein Homology CDS 774060 774677 . + 0 ID=cds807;Parent=gene829;Dbxref=Genbank:WP_005061679.1;Name=WP_005061679.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005061679.1;transl_table=11 NC_008258.1 RefSeq repeat_region 774499 777238 . + . ID=id118;gbkey=repeat_region NC_008258.1 RefSeq gene 774677 774856 . + . ID=gene830;Name=SFV_RS04165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04165 NC_008258.1 Protein Homology CDS 774677 774856 . + 0 ID=cds808;Parent=gene830;Dbxref=Genbank:WP_001039888.1;Name=WP_001039888.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039888.1;transl_table=11 NC_008258.1 RefSeq gene 774857 776683 . - . ID=gene831;Name=SFV_RS04170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04170;old_locus_tag=SFV_0749 NC_008258.1 Protein Homology CDS 774857 776683 . - 0 ID=cds809;Parent=gene831;Dbxref=Genbank:WP_011587197.1;Name=WP_011587197.1;gbkey=CDS;product=invasion protein;protein_id=WP_011587197.1;transl_table=11 NC_008258.1 RefSeq gene 777565 778560 . + . ID=gene832;Name=SFV_RS04175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04175;old_locus_tag=SFV_0750 NC_008258.1 Protein Homology CDS 777565 778560 . + 0 ID=cds810;Parent=gene832;Dbxref=Genbank:WP_000815445.1;Name=WP_000815445.1;Note=catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate;gbkey=CDS;product=6-phosphogluconolactonase;protein_id=WP_000815445.1;transl_table=11 NC_008258.1 RefSeq gene 778601 779554 . - . ID=gene833;Name=SFV_RS04180;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04180;pseudo=true NC_008258.1 Protein Homology CDS 778601 779554 . - 0 ID=cds811;Parent=gene833;gbkey=CDS;product=LysR family transcriptional regulator;pseudo=true;transl_except=(pos:complement(779012..779014)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 779738 780790 . + . ID=gene834;Name=SFV_RS04185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04185;old_locus_tag=SFV_0752 NC_008258.1 Protein Homology CDS 779738 780790 . + 0 ID=cds812;Parent=gene834;Dbxref=Genbank:WP_000723652.1;Name=WP_000723652.1;gbkey=CDS;product=PrpF family isomerase;protein_id=WP_000723652.1;transl_table=11 NC_008258.1 RefSeq gene 780866 782299 . + . ID=gene835;Name=SFV_RS04190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04190;old_locus_tag=SFV_0753 NC_008258.1 Protein Homology CDS 780866 782299 . + 0 ID=cds813;Parent=gene835;Dbxref=Genbank:WP_001036495.1;Name=WP_001036495.1;gbkey=CDS;product=membrane protein;protein_id=WP_001036495.1;transl_table=11 NC_008258.1 RefSeq repeat_region 782311 782426 . + . ID=id119;gbkey=repeat_region NC_008258.1 RefSeq gene 782482 784662 . + . ID=gene836;Name=SFV_RS04195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04195;old_locus_tag=SFV_0754 NC_008258.1 Protein Homology CDS 782482 784662 . + 0 ID=cds814;Parent=gene836;Dbxref=Genbank:WP_000593944.1;Name=WP_000593944.1;gbkey=CDS;product=hydratase;protein_id=WP_000593944.1;transl_table=11 NC_008258.1 RefSeq gene 784803 786086 . - . ID=gene837;Name=SFV_RS04200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04200;old_locus_tag=SFV_0755 NC_008258.1 Protein Homology CDS 784803 786086 . - 0 ID=cds815;Parent=gene837;Dbxref=Genbank:WP_001091540.1;Name=WP_001091540.1;gbkey=CDS;product=acyl-CoA thioesterase;protein_id=WP_001091540.1;transl_table=11 NC_008258.1 RefSeq gene 786238 786714 . - . ID=gene838;Name=SFV_RS04205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04205;old_locus_tag=SFV_0756 NC_008258.1 Protein Homology CDS 786238 786714 . - 0 ID=cds816;Parent=gene838;Dbxref=Genbank:WP_000767391.1;Name=WP_000767391.1;Note=YbhB%3B similar to rat and human kinase inhibitory proteins;gbkey=CDS;product=kinase inhibitor protein;protein_id=WP_000767391.1;transl_table=11 NC_008258.1 RefSeq gene 786773 788005 . - . ID=gene839;Name=SFV_RS04210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04210;old_locus_tag=SFV_0758 NC_008258.1 Protein Homology CDS 786773 788005 . - 0 ID=cds817;Parent=gene839;Dbxref=Genbank:WP_001342850.1;Name=WP_001342850.1;Note=catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7%2C8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate;gbkey=CDS;product=adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA;protein_id=WP_001342850.1;transl_table=11 NC_008258.1 RefSeq gene 788149 789189 . + . ID=gene840;Name=SFV_RS04215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04215;old_locus_tag=SFV_0757 NC_008258.1 Protein Homology CDS 788149 789189 . + 0 ID=cds818;Parent=gene840;Dbxref=Genbank:WP_000951226.1;Name=WP_000951226.1;Note=catalyzes the formation of biotin from dethiobiotin;gbkey=CDS;product=biotin synthase;protein_id=WP_000951226.1;transl_table=11 NC_008258.1 RefSeq gene 789186 790340 . + . ID=gene841;Name=SFV_RS04220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04220;old_locus_tag=SFV_0759 NC_008258.1 Protein Homology CDS 789186 790340 . + 0 ID=cds819;Parent=gene841;Dbxref=Genbank:WP_000118810.1;Name=WP_000118810.1;Note=catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine;gbkey=CDS;product=8-amino-7-oxononanoate synthase;protein_id=WP_000118810.1;transl_table=11 NC_008258.1 RefSeq gene 790327 791082 . + . ID=gene842;Name=SFV_RS04225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04225;old_locus_tag=SFV_0760 NC_008258.1 Protein Homology CDS 790327 791082 . + 0 ID=cds820;Parent=gene842;Dbxref=Genbank:WP_000246759.1;Name=WP_000246759.1;Note=methyltransferase%3B acyl carrier protein involved in an unidentified step in the synthesis of pimeloyl-CoA%2C a biotin precursor%3B member of the bio operon (bioABFCD)%3B in Escherichia coli%2C bioC-null mutants require biotin for growth;gbkey=CDS;product=malonyl-[acyl-carrier protein] O-methyltransferase BioC;protein_id=WP_000246759.1;transl_table=11 NC_008258.1 RefSeq gene 791075 791752 . + . ID=gene843;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=SFV_RS04230;old_locus_tag=SFV_0761 NC_008258.1 Protein Homology CDS 791075 791752 . + 0 ID=cds821;Parent=gene843;Dbxref=Genbank:WP_000044868.1;Name=WP_000044868.1;Note=DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium;gbkey=CDS;gene=bioD;product=dithiobiotin synthetase;protein_id=WP_000044868.1;transl_table=11 NC_008258.1 RefSeq gene 792331 794352 . + . ID=gene844;Name=SFV_RS04235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04235;old_locus_tag=SFV_0762 NC_008258.1 Protein Homology CDS 792331 794352 . + 0 ID=cds822;Parent=gene844;Dbxref=Genbank:WP_000042516.1;Name=WP_000042516.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands%2C where it probes for the presence of a lesion;gbkey=CDS;product=UvrABC system protein B;protein_id=WP_000042516.1;transl_table=11 NC_008258.1 RefSeq gene 794544 795452 . - . ID=gene845;Name=SFV_RS04240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04240;old_locus_tag=SFV_0763 NC_008258.1 Protein Homology CDS 794544 795452 . - 0 ID=cds823;Parent=gene845;Dbxref=Genbank:WP_005048534.1;Name=WP_005048534.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048534.1;transl_table=11 NC_008258.1 RefSeq gene 795695 795851 . - . ID=gene846;Name=SFV_RS04245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04245;pseudo=true NC_008258.1 Protein Homology CDS 795695 795851 . - 0 ID=cds824;Parent=gene846;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 795850 796839 . + . ID=gene847;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=SFV_RS04250;old_locus_tag=SFV_0764 NC_008258.1 Protein Homology CDS 795850 796839 . + 0 ID=cds825;Parent=gene847;Dbxref=Genbank:WP_000168192.1;Name=WP_000168192.1;Note=together with moaC%2C is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z;gbkey=CDS;gene=moaA;product=cyclic pyranopterin phosphate synthase MoaA;protein_id=WP_000168192.1;transl_table=11 NC_008258.1 RefSeq gene 796861 797373 . + . ID=gene848;Name=SFV_RS04255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04255;old_locus_tag=SFV_0765 NC_008258.1 Protein Homology CDS 796861 797373 . + 0 ID=cds826;Parent=gene848;Dbxref=Genbank:WP_000084630.1;Name=WP_000084630.1;gbkey=CDS;product=molybdopterin biosynthesis protein MoeB;protein_id=WP_000084630.1;transl_table=11 NC_008258.1 RefSeq gene 797376 797861 . + . ID=gene849;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=SFV_RS04260;old_locus_tag=SFV_0766 NC_008258.1 Protein Homology CDS 797376 797861 . + 0 ID=cds827;Parent=gene849;Dbxref=Genbank:WP_000080885.1;Name=WP_000080885.1;Note=MoaC%3B along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z%3B involved in molybdenum cofactor biosynthesis;gbkey=CDS;gene=moaC;product=cyclic pyranopterin monophosphate synthase accessory protein;protein_id=WP_000080885.1;transl_table=11 NC_008258.1 RefSeq gene 797854 798099 . + . ID=gene850;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=SFV_RS04265;old_locus_tag=SFV_0767 NC_008258.1 Protein Homology CDS 797854 798099 . + 0 ID=cds828;Parent=gene850;Dbxref=Genbank:WP_000598624.1;Name=WP_000598624.1;Note=catalyzes the conversion of molybdopterin precursor Z into molybdopterin;gbkey=CDS;gene=moaD;product=molybdopterin synthase small subunit;protein_id=WP_000598624.1;transl_table=11 NC_008258.1 RefSeq gene 798101 798553 . + . ID=gene851;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=SFV_RS04270;old_locus_tag=SFV_0768 NC_008258.1 Protein Homology CDS 798101 798553 . + 0 ID=cds829;Parent=gene851;Dbxref=Genbank:WP_000852285.1;Name=WP_000852285.1;Note=catalyzes the conversion of molybdopterin precursor Z into molybdopterin;gbkey=CDS;gene=moaE;product=molybdopterin guanine dinucleotide biosynthesis protein MoaE;protein_id=WP_000852285.1;transl_table=11 NC_008258.1 RefSeq gene 798690 799394 . + . ID=gene852;Name=SFV_RS04275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04275;old_locus_tag=SFV_0769 NC_008258.1 Protein Homology CDS 798690 799394 . + 0 ID=cds830;Parent=gene852;Dbxref=Genbank:WP_000373624.1;Name=WP_000373624.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000373624.1;transl_table=11 NC_008258.1 RefSeq gene 799599 800312 . + . ID=gene853;Name=SFV_RS04280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04280;old_locus_tag=SFV_0770 NC_008258.1 Protein Homology CDS 799599 800312 . + 0 ID=cds831;Parent=gene853;Dbxref=Genbank:WP_000446914.1;Name=WP_000446914.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000446914.1;transl_table=11 NC_008258.1 RefSeq gene 800348 801304 . - . ID=gene854;Name=SFV_RS04285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04285;old_locus_tag=SFV_0771 NC_008258.1 Protein Homology CDS 800348 801304 . - 0 ID=cds832;Parent=gene854;Dbxref=Genbank:WP_000045466.1;Name=WP_000045466.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000045466.1;transl_table=11 NC_008258.1 RefSeq gene 801304 802545 . - . ID=gene855;Name=SFV_RS04290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04290;old_locus_tag=SFV_0772 NC_008258.1 Protein Homology CDS 801304 802545 . - 0 ID=cds833;Parent=gene855;Dbxref=Genbank:WP_000650361.1;Name=WP_000650361.1;gbkey=CDS;product=cardiolipin synthase 2;protein_id=WP_000650361.1;transl_table=11 NC_008258.1 RefSeq gene 802542 803303 . - . ID=gene856;Name=SFV_RS04295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04295;old_locus_tag=SFV_0773 NC_008258.1 Protein Homology CDS 802542 803303 . - 0 ID=cds834;Parent=gene856;Dbxref=Genbank:WP_001113348.1;Name=WP_001113348.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001113348.1;transl_table=11 NC_008258.1 RefSeq gene 803436 803846 . + . ID=gene857;Name=SFV_RS04300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04300;old_locus_tag=SFV_0774 NC_008258.1 Protein Homology CDS 803436 803846 . + 0 ID=cds835;Parent=gene857;Dbxref=Genbank:WP_000871982.1;Name=WP_000871982.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000871982.1;transl_table=11 NC_008258.1 RefSeq gene 803808 804915 . - . ID=gene858;Name=SFV_RS04305;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04305;pseudo=true NC_008258.1 Protein Homology CDS 803808 804915 . - 0 ID=cds836;Parent=gene858;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 804926 806059 . - . ID=gene859;Name=SFV_RS04310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04310;old_locus_tag=SFV_0776 NC_008258.1 Protein Homology CDS 804926 806059 . - 0 ID=cds837;Parent=gene859;Dbxref=Genbank:WP_000070107.1;Name=WP_000070107.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000070107.1;transl_table=11 NC_008258.1 RefSeq gene 806052 807788 . - . ID=gene860;Name=SFV_RS04315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04315;old_locus_tag=SFV_0777 NC_008258.1 Protein Homology CDS 806052 807788 . - 0 ID=cds838;Parent=gene860;Dbxref=Genbank:WP_005105177.1;Name=WP_005105177.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_005105177.1;transl_table=11 NC_008258.1 RefSeq gene 807781 808776 . - . ID=gene861;Name=SFV_RS04320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04320;old_locus_tag=SFV_0778 NC_008258.1 Protein Homology CDS 807781 808776 . - 0 ID=cds839;Parent=gene861;Dbxref=Genbank:WP_000743444.1;Name=WP_000743444.1;gbkey=CDS;product=transporter;protein_id=WP_000743444.1;transl_table=11 NC_008258.1 RefSeq gene 808779 809450 . - . ID=gene862;Name=SFV_RS04325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04325;old_locus_tag=SFV_0779 NC_008258.1 Protein Homology CDS 808779 809450 . - 0 ID=cds840;Parent=gene862;Dbxref=Genbank:WP_001296991.1;Name=WP_001296991.1;gbkey=CDS;product=DUF1956 domain-containing tetR family transcriptional regulator;protein_id=WP_001296991.1;transl_table=11 NC_008258.1 RefSeq gene 809679 810899 . + . ID=gene863;Name=SFV_RS04330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04330;old_locus_tag=SFV_0780 NC_008258.1 Protein Homology CDS 809679 810899 . + 0 ID=cds841;Parent=gene863;Dbxref=Genbank:WP_000007129.1;Name=WP_000007129.1;Note=this helicase is not essential cell growth;gbkey=CDS;product=ATP-dependent RNA helicase RhlE;protein_id=WP_000007129.1;transl_table=11 NC_008258.1 RefSeq gene 810892 811086 . + . ID=gene864;Name=SFV_RS04335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04335 NC_008258.1 Protein Homology CDS 810892 811086 . + 0 ID=cds842;Parent=gene864;Dbxref=Genbank:WP_001336078.1;Name=WP_001336078.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001336078.1;transl_table=11 NC_008258.1 RefSeq gene 811073 811522 . - . ID=gene865;Name=SFV_RS04340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04340;old_locus_tag=SFV_0782 NC_008258.1 Protein Homology CDS 811073 811522 . - 0 ID=cds843;Parent=gene865;Dbxref=Genbank:WP_005048500.1;Name=WP_005048500.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048500.1;transl_table=11 NC_008258.1 RefSeq gene 811675 813825 . + . ID=gene866;Name=dinG;gbkey=Gene;gene=dinG;gene_biotype=protein_coding;locus_tag=SFV_RS04345;old_locus_tag=SFV_0781 NC_008258.1 Protein Homology CDS 811675 813825 . + 0 ID=cds844;Parent=gene866;Dbxref=Genbank:WP_005067202.1;Name=WP_005067202.1;Note=helicase involved in DNA repair and perhaps also replication;gbkey=CDS;gene=dinG;product=ATP-dependent DNA helicase DinG;protein_id=WP_005067202.1;transl_table=11 NC_008258.1 RefSeq gene 813853 814815 . + . ID=gene867;Name=SFV_RS04350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04350;old_locus_tag=SFV_0783 NC_008258.1 Protein Homology CDS 813853 814815 . + 0 ID=cds845;Parent=gene867;Dbxref=Genbank:WP_000386532.1;Name=WP_000386532.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_000386532.1;transl_table=11 NC_008258.1 RefSeq gene 814956 816041 . + . ID=gene868;Name=SFV_RS04355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04355;old_locus_tag=SFV_0784 NC_008258.1 Protein Homology CDS 814956 816041 . + 0 ID=cds846;Parent=gene868;Dbxref=Genbank:WP_000443521.1;Name=WP_000443521.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_000443521.1;transl_table=11 NC_008258.1 RefSeq gene 816270 816530 . - . ID=gene869;Name=SFV_RS04360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04360;old_locus_tag=SFV_0785 NC_008258.1 Protein Homology CDS 816270 816530 . - 0 ID=cds847;Parent=gene869;Dbxref=Genbank:WP_000849301.1;Name=WP_000849301.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000849301.1;transl_table=11 NC_008258.1 RefSeq gene 816795 817061 . - . ID=gene870;Name=SFV_RS04365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04365;old_locus_tag=SFV_0786 NC_008258.1 Protein Homology CDS 816795 817061 . - 0 ID=cds848;Parent=gene870;Dbxref=Genbank:WP_000135440.1;Name=WP_000135440.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000135440.1;transl_table=11 NC_008258.1 RefSeq gene 817135 817812 . - . ID=gene871;Name=SFV_RS04370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04370;old_locus_tag=SFV_0787 NC_008258.1 Protein Homology CDS 817135 817812 . - 0 ID=cds849;Parent=gene871;Dbxref=Genbank:WP_000990151.1;Name=WP_000990151.1;gbkey=CDS;product=PKHD-type hydroxylase;protein_id=WP_000990151.1;transl_table=11 NC_008258.1 RefSeq gene 817854 819863 . - . ID=gene872;Name=SFV_RS04375;end_range=819863,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04375;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 817854 819863 . - 0 ID=cds850;Parent=gene872;Note=Fiu%3B YbiL%3B porin involved in the uptake of iron complexed with catecholate siderophores (e.g. dihydroxybenzoylserine%2C dihydroxybenzoate) and beta lactam agents%3B Fiu interacts with TonB which provides the energy required for transport across the outer membrane%3B acts as a receptor for iron-siderophores and microcins E492%2C M%2C and H47%3B outer membrane protein;end_range=819863,.;gbkey=CDS;partial=true;product=catecholate siderophore receptor Fiu;pseudo=true;transl_except=(pos:complement(819054..819056)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 819840 821272 . + . ID=id120;gbkey=repeat_region NC_008258.1 RefSeq region 819843 821270 . + . ID=id121;gbkey=mobile_element NC_008258.1 RefSeq gene 819928 821256 . + . ID=gene873;Name=SFV_RS04380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04380;old_locus_tag=SFV_0788 NC_008258.1 Protein Homology CDS 819928 821256 . + 0 ID=cds851;Parent=gene873;Dbxref=Genbank:WP_000547338.1;Name=WP_000547338.1;gbkey=CDS;product=transposase;protein_id=WP_000547338.1;transl_table=11 NC_008258.1 RefSeq gene 821245 821574 . - . ID=gene874;Name=SFV_RS04385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04385 NC_008258.1 Protein Homology CDS 821245 821574 . - 0 ID=cds852;Parent=gene874;Dbxref=Genbank:WP_001467839.1;Name=WP_001467839.1;gbkey=CDS;product=TonB-dependent receptor;protein_id=WP_001467839.1;transl_table=11 NC_008258.1 RefSeq gene 821839 822099 . - . ID=gene875;Name=SFV_RS04390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04390 NC_008258.1 Protein Homology CDS 821839 822099 . - 0 ID=cds853;Parent=gene875;Dbxref=Genbank:WP_000710620.1;Name=WP_000710620.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000710620.1;transl_table=11 NC_008258.1 RefSeq gene 822375 823301 . + . ID=gene876;Name=SFV_RS04395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04395;old_locus_tag=SFV_0791 NC_008258.1 Protein Homology CDS 822375 823301 . + 0 ID=cds854;Parent=gene876;Dbxref=Genbank:WP_001343936.1;Name=WP_001343936.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase F;protein_id=WP_001343936.1;transl_table=11 NC_008258.1 RefSeq gene 823298 825361 . - . ID=gene877;Name=SFV_RS04400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04400;old_locus_tag=SFV_0792 NC_008258.1 Protein Homology CDS 823298 825361 . - 0 ID=cds855;Parent=gene877;Dbxref=Genbank:WP_044023795.1;Name=WP_044023795.1;gbkey=CDS;product=mechanosensitive channel protein;protein_id=WP_044023795.1;transl_table=11 NC_008258.1 RefSeq gene 825521 825622 . + . ID=gene878;Name=SFV_RS04405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04405 NC_008258.1 Protein Homology CDS 825521 825622 . + 0 ID=cds856;Parent=gene878;Dbxref=Genbank:WP_000188784.1;Name=WP_000188784.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000188784.1;transl_table=11 NC_008258.1 RefSeq gene 825783 826505 . - . ID=gene879;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=SFV_RS04410;old_locus_tag=SFV_0793 NC_008258.1 Protein Homology CDS 825783 826505 . - 0 ID=cds857;Parent=gene879;Dbxref=Genbank:WP_000569086.1;Name=WP_000569086.1;Note=similar to ATP-binding component of ABC transporters;gbkey=CDS;gene=glnQ;product=glutamine ABC transporter ATP-binding protein;protein_id=WP_000569086.1;transl_table=11 NC_008258.1 RefSeq gene 826502 827161 . - . ID=gene880;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=SFV_RS04415;old_locus_tag=SFV_0794 NC_008258.1 Protein Homology CDS 826502 827161 . - 0 ID=cds858;Parent=gene880;Dbxref=Genbank:WP_001159065.1;Name=WP_001159065.1;Note=similar to permease component of ABC transporters%3B mutations impair ability of Escherichia coli to transport and utilize glutamine;gbkey=CDS;gene=glnP;product=glutamine ABC transporter permease;protein_id=WP_001159065.1;transl_table=11 NC_008258.1 RefSeq gene 827300 828046 . - . ID=gene881;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=SFV_RS04420;old_locus_tag=SFV_0795 NC_008258.1 Protein Homology CDS 827300 828046 . - 0 ID=cds859;Parent=gene881;Dbxref=Genbank:WP_000843867.1;Name=WP_000843867.1;Note=similar to periplasmic-binding component of ABC transporters;gbkey=CDS;gene=glnH;product=glutamine ABC transporter substrate-binding protein;protein_id=WP_000843867.1;transl_table=11 NC_008258.1 RefSeq gene 828092 828385 . - . ID=gene882;Name=SFV_RS04425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04425;pseudo=true NC_008258.1 Protein Homology CDS 828092 828385 . - 0 ID=cds860;Parent=gene882;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(828326..828328)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 828450 828953 . - . ID=gene883;Name=SFV_RS04430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04430;old_locus_tag=SFV_0796 NC_008258.1 Protein Homology CDS 828450 828953 . - 0 ID=cds861;Parent=gene883;Dbxref=Genbank:WP_000100800.1;Name=WP_000100800.1;Note=binds DNA in a non-sequence-specific manner and is abundant during stationary phase%3B forms a DNA-protein crystal that protects DNA from damage%3B required for normal starvation response and long-term stationary viability%3B forms a homododecameric complex and sequesters iron which provides protection against oxidative damage;gbkey=CDS;product=DNA protection during starvation protein;protein_id=WP_000100800.1;transl_table=11 NC_008258.1 RefSeq gene 829252 830139 . - . ID=gene884;Name=SFV_RS04435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04435;old_locus_tag=SFV_0797 NC_008258.1 Protein Homology CDS 829252 830139 . - 0 ID=cds862;Parent=gene884;Dbxref=Genbank:WP_005048475.1;Name=WP_005048475.1;gbkey=CDS;product=threonine transporter RhtB;protein_id=WP_005048475.1;transl_table=11 NC_008258.1 RefSeq gene 830492 831007 . + . ID=gene885;Name=ompX;gbkey=Gene;gene=ompX;gene_biotype=protein_coding;locus_tag=SFV_RS04440;old_locus_tag=SFV_0798 NC_008258.1 Protein Homology CDS 830492 831007 . + 0 ID=cds863;Parent=gene885;Dbxref=Genbank:WP_001295296.1;Name=WP_001295296.1;Note=OmpX%3B involved in cell adhesion%3B forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface%3B mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains;gbkey=CDS;gene=ompX;product=outer membrane protein X;protein_id=WP_001295296.1;transl_table=11 NC_008258.1 RefSeq gene 831055 832638 . - . ID=gene886;Name=SFV_RS04445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04445;old_locus_tag=SFV_0799 NC_008258.1 Protein Homology CDS 831055 832638 . - 0 ID=cds864;Parent=gene886;Dbxref=Genbank:WP_001054680.1;Name=WP_001054680.1;gbkey=CDS;product=phosphoethanolamine transferase;protein_id=WP_001054680.1;transl_table=11 NC_008258.1 RefSeq gene 832910 833038 . - . ID=gene887;Name=SFV_RS04450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04450 NC_008258.1 Protein Homology CDS 832910 833038 . - 0 ID=cds865;Parent=gene887;Dbxref=Genbank:WP_001001761.1;Name=WP_001001761.1;gbkey=CDS;product=small protein MntS;protein_id=WP_001001761.1;transl_table=11 NC_008258.1 RefSeq gene 833224 833691 . + . ID=gene888;Name=SFV_RS04455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04455;old_locus_tag=SFV_0800 NC_008258.1 Protein Homology CDS 833224 833691 . + 0 ID=cds866;Parent=gene888;Dbxref=Genbank:WP_000091007.1;Name=WP_000091007.1;Note=Transcriptional regulator that represses the manganese transporter MntH when manganese is present;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000091007.1;transl_table=11 NC_008258.1 RefSeq gene 833688 834806 . + . ID=gene889;Name=SFV_RS04460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04460;old_locus_tag=SFV_0801 NC_008258.1 Protein Homology CDS 833688 834806 . + 0 ID=cds867;Parent=gene889;Dbxref=Genbank:WP_000056462.1;Name=WP_000056462.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000056462.1;transl_table=11 NC_008258.1 RefSeq gene 834864 835784 . - . ID=gene890;Name=SFV_RS04465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04465;old_locus_tag=SFV_0802 NC_008258.1 Protein Homology CDS 834864 835784 . - 0 ID=cds868;Parent=gene890;Dbxref=Genbank:WP_001056377.1;Name=WP_001056377.1;gbkey=CDS;product=transpeptidase;protein_id=WP_001056377.1;transl_table=11 NC_008258.1 RefSeq gene 836003 837595 . + . ID=gene891;Name=SFV_RS04470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04470;old_locus_tag=SFV_0803 NC_008258.1 Protein Homology CDS 836003 837595 . + 0 ID=cds869;Parent=gene891;Dbxref=Genbank:WP_000961469.1;Name=WP_000961469.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000961469.1;transl_table=11 NC_008258.1 RefSeq gene 837836 839101 . - . ID=gene892;Name=SFV_RS04475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04475;old_locus_tag=SFV_0804 NC_008258.1 Protein Homology CDS 837836 839101 . - 0 ID=cds870;Parent=gene892;Dbxref=Genbank:WP_000168815.1;Name=WP_000168815.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000168815.1;transl_table=11 NC_008258.1 RefSeq gene 839253 840068 . - . ID=gene893;Name=SFV_RS04480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04480;old_locus_tag=SFV_0805 NC_008258.1 Protein Homology CDS 839253 840068 . - 0 ID=cds871;Parent=gene893;Dbxref=Genbank:WP_000114270.1;Name=WP_000114270.1;gbkey=CDS;product=sugar phosphatase;protein_id=WP_000114270.1;transl_table=11 NC_008258.1 RefSeq gene 840214 842646 . - . ID=gene894;Name=SFV_RS04485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04485;old_locus_tag=SFV_0806 NC_008258.1 Protein Homology CDS 840214 842646 . - 0 ID=cds872;Parent=gene894;Dbxref=Genbank:WP_000209316.1;Name=WP_000209316.1;gbkey=CDS;product=formate acetyltransferase;protein_id=WP_000209316.1;transl_table=11 NC_008258.1 RefSeq gene 842652 843551 . - . ID=gene895;Name=SFV_RS04490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04490;old_locus_tag=SFV_0807 NC_008258.1 Protein Homology CDS 842652 843551 . - 0 ID=cds873;Parent=gene895;Dbxref=Genbank:WP_000576964.1;Name=WP_000576964.1;gbkey=CDS;product=pyruvate formate-lyase 3-activating protein;protein_id=WP_000576964.1;transl_table=11 NC_008258.1 RefSeq gene 843682 844344 . + . ID=gene896;Name=SFV_RS04495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04495;old_locus_tag=SFV_0808 NC_008258.1 Protein Homology CDS 843682 844344 . + 0 ID=cds874;Parent=gene896;Dbxref=Genbank:WP_005105183.1;Name=WP_005105183.1;Note=similar to transaldolase from Escherichia coli%3B many organisms have multiple copies;gbkey=CDS;product=fructose-6-phosphate aldolase;protein_id=WP_005105183.1;transl_table=11 NC_008258.1 RefSeq gene 844523 845272 . - . ID=gene897;Name=SFV_RS04500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04500;old_locus_tag=SFV_0809 NC_008258.1 Protein Homology CDS 844523 845272 . - 0 ID=cds875;Parent=gene897;Dbxref=Genbank:WP_000829250.1;Name=WP_000829250.1;gbkey=CDS;product=molybdopterin-synthase adenylyltransferase;protein_id=WP_000829250.1;transl_table=11 NC_008258.1 RefSeq gene 845272 846507 . - . ID=gene898;Name=SFV_RS04505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04505;old_locus_tag=SFV_0810 NC_008258.1 Protein Homology CDS 845272 846507 . - 0 ID=cds876;Parent=gene898;Dbxref=Genbank:WP_000397402.1;Name=WP_000397402.1;Note=is involved in the formation of active molybdenum cofactor and the chelation of molybdenum;gbkey=CDS;product=molybdopterin biosynthesis protein MoeA;protein_id=WP_000397402.1;transl_table=11 NC_008258.1 RefSeq gene 846769 847677 . + . ID=gene899;Name=SFV_RS04510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04510;old_locus_tag=SFV_0811 NC_008258.1 Protein Homology CDS 846769 847677 . + 0 ID=cds877;Parent=gene899;Dbxref=Genbank:WP_005105186.1;Name=WP_005105186.1;gbkey=CDS;product=isoaspartyl peptidase;protein_id=WP_005105186.1;transl_table=11 NC_008258.1 RefSeq gene 847664 849535 . + . ID=gene900;Name=SFV_RS04515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04515;old_locus_tag=SFV_0812 NC_008258.1 Protein Homology CDS 847664 849535 . + 0 ID=cds878;Parent=gene900;Dbxref=Genbank:WP_001120567.1;Name=WP_001120567.1;Note=with GsiBCD is involved in glutathione import%3B GsiA contains 2 ATP-binding domains;gbkey=CDS;product=glutathione import ATP-binding protein GsiA;protein_id=WP_001120567.1;transl_table=11 NC_008258.1 RefSeq gene 849555 851099 . + . ID=gene901;Name=SFV_RS04520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04520;old_locus_tag=SFV_0813 NC_008258.1 Protein Homology CDS 849555 851099 . + 0 ID=cds879;Parent=gene901;Dbxref=Genbank:WP_000090148.1;Name=WP_000090148.1;Note=with GsiACD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione-binding protein GsiB;protein_id=WP_000090148.1;transl_table=11 NC_008258.1 RefSeq gene 851117 852037 . + . ID=gene902;Name=SFV_RS04525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04525;old_locus_tag=SFV_0814 NC_008258.1 Protein Homology CDS 851117 852037 . + 0 ID=cds880;Parent=gene902;Dbxref=Genbank:WP_000936032.1;Name=WP_000936032.1;Note=with GsiABD is involved in the transport of glutathione into the cell;gbkey=CDS;product=glutathione ABC transporter permease;protein_id=WP_000936032.1;transl_table=11 NC_008258.1 RefSeq gene 852040 852953 . + . ID=gene903;Name=SFV_RS04530;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04530;pseudo=true NC_008258.1 Protein Homology CDS 852040 852953 . + 0 ID=cds881;Parent=gene903;Note=with GsiABD is involved in the transport of glutathione into the cell;exception=annotated by transcript or proteomic data;gbkey=CDS;product=glutathione ABC transporter permease;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 853131 855479 . + . ID=gene904;Name=SFV_RS04535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04535;old_locus_tag=SFV_0816 NC_008258.1 Protein Homology CDS 853131 855479 . + 0 ID=cds882;Parent=gene904;Dbxref=Genbank:WP_024260244.1;Name=WP_024260244.1;gbkey=CDS;product=c-di-GMP phosphodiesterase;protein_id=WP_024260244.1;transl_table=11 NC_008258.1 RefSeq gene 855487 856815 . + . ID=gene905;Name=SFV_RS04540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04540;old_locus_tag=SFV_0817 NC_008258.1 Protein Homology CDS 855487 856815 . + 0 ID=cds883;Parent=gene905;Dbxref=Genbank:WP_000086920.1;Name=WP_000086920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000086920.1;transl_table=11 NC_008258.1 RefSeq gene 856862 858187 . - . ID=gene906;Name=rimO;gbkey=Gene;gene=rimO;gene_biotype=protein_coding;locus_tag=SFV_RS04545;old_locus_tag=SFV_0818 NC_008258.1 Protein Homology CDS 856862 858187 . - 0 ID=cds884;Parent=gene906;Dbxref=Genbank:WP_000049377.1;Name=WP_000049377.1;Note=catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit;gbkey=CDS;gene=rimO;product=ribosomal protein S12 methylthiotransferase RimO;protein_id=WP_000049377.1;transl_table=11 NC_008258.1 RefSeq gene 858400 858783 . + . ID=gene907;Name=bssR;gbkey=Gene;gene=bssR;gene_biotype=protein_coding;gene_synonym=yliH;locus_tag=SFV_RS04550;old_locus_tag=SFV_0819 NC_008258.1 Protein Homology CDS 858400 858783 . + 0 ID=cds885;Parent=gene907;Dbxref=Genbank:WP_000497137.1;Name=WP_000497137.1;Note=BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing;gbkey=CDS;gene=bssR;product=biofilm regulator BssR;protein_id=WP_000497137.1;transl_table=11 NC_008258.1 RefSeq gene 858894 859832 . + . ID=gene908;Name=SFV_RS04555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04555 NC_008258.1 Protein Homology CDS 858894 859832 . + 0 ID=cds886;Parent=gene908;Dbxref=Genbank:WP_005073796.1;Name=WP_005073796.1;gbkey=CDS;product=aldose dehydrogenase;protein_id=WP_005073796.1;transl_table=11 NC_008258.1 RefSeq gene 859802 860008 . + . ID=gene909;Name=SFV_RS04560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04560 NC_008258.1 Protein Homology CDS 859802 860008 . + 0 ID=cds887;Parent=gene909;Dbxref=Genbank:WP_005073800.1;Name=WP_005073800.1;gbkey=CDS;product=soluble aldose sugar dehydrogenase yliI domain protein;protein_id=WP_005073800.1;transl_table=11 NC_008258.1 RefSeq gene 860005 860583 . - . ID=gene910;Name=SFV_RS04565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04565;old_locus_tag=SFV_0821 NC_008258.1 Protein Homology CDS 860005 860583 . - 0 ID=cds888;Parent=gene910;Dbxref=Genbank:WP_001313688.1;Name=WP_001313688.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_001313688.1;transl_table=11 NC_008258.1 RefSeq gene 860877 861842 . + . ID=gene911;Name=SFV_RS04570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04570 NC_008258.1 Protein Homology CDS 860877 861842 . + 0 ID=cds889;Parent=gene911;Dbxref=Genbank:WP_005048437.1;Name=WP_005048437.1;gbkey=CDS;product=peptidase M15;protein_id=WP_005048437.1;transl_table=11 NC_008258.1 RefSeq repeat_region 861834 863099 . + . ID=id122;gbkey=repeat_region NC_008258.1 RefSeq region 861835 863097 . + . ID=id123;gbkey=mobile_element NC_008258.1 RefSeq gene 861899 862201 . + . ID=gene912;Name=SFV_RS04575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04575;old_locus_tag=SFV_0823 NC_008258.1 Protein Homology CDS 861899 862201 . + 0 ID=cds890;Parent=gene912;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 862342 863055 . + . ID=gene913;Name=SFV_RS04580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04580;old_locus_tag=SFV_0824 NC_008258.1 Protein Homology CDS 862342 863055 . + 0 ID=cds891;Parent=gene913;Dbxref=Genbank:WP_000940428.1;Name=WP_000940428.1;gbkey=CDS;product=transposase;protein_id=WP_000940428.1;transl_table=11 NC_008258.1 RefSeq gene 863100 863345 . + . ID=gene914;Name=SFV_RS04585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04585 NC_008258.1 Protein Homology CDS 863100 863345 . + 0 ID=cds892;Parent=gene914;Dbxref=Genbank:WP_005048432.1;Name=WP_005048432.1;gbkey=CDS;product=peptidase M15;protein_id=WP_005048432.1;transl_table=11 NC_008258.1 RefSeq gene 863392 864150 . - . ID=gene915;Name=SFV_RS04590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04590;old_locus_tag=SFV_0825 NC_008258.1 Protein Homology CDS 863392 864150 . - 0 ID=cds893;Parent=gene915;Dbxref=Genbank:WP_000450120.1;Name=WP_000450120.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000450120.1;transl_table=11 NC_008258.1 RefSeq gene 864208 864804 . - . ID=gene916;Name=SFV_RS04595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04595;old_locus_tag=SFV_0826 NC_008258.1 Protein Homology CDS 864208 864804 . - 0 ID=cds894;Parent=gene916;Dbxref=Genbank:WP_001612704.1;Name=WP_001612704.1;gbkey=CDS;product=UDP pyrophosphate phosphatase;protein_id=WP_001612704.1;transl_table=11 NC_008258.1 RefSeq gene 865089 866315 . + . ID=gene917;Name=SFV_RS04600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04600;old_locus_tag=SFV_0827 NC_008258.1 Protein Homology CDS 865089 866315 . + 0 ID=cds895;Parent=gene917;Dbxref=Genbank:WP_001180085.1;Name=WP_001180085.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_001180085.1;transl_table=11 NC_008258.1 RefSeq gene 866356 866634 . - . ID=gene918;Name=SFV_RS04605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04605;old_locus_tag=SFV_0828 NC_008258.1 Protein Homology CDS 866356 866634 . - 0 ID=cds896;Parent=gene918;Dbxref=Genbank:WP_001295900.1;Name=WP_001295900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295900.1;transl_table=11 NC_008258.1 RefSeq gene 866726 867541 . - . ID=gene919;Name=SFV_RS04610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04610;old_locus_tag=SFV_0829 NC_008258.1 Protein Homology CDS 866726 867541 . - 0 ID=cds897;Parent=gene919;Dbxref=Genbank:WP_000023562.1;Name=WP_000023562.1;gbkey=CDS;product=sugar phosphatase SupH;protein_id=WP_000023562.1;transl_table=11 NC_008258.1 RefSeq gene 867541 868749 . - . ID=gene920;Name=SFV_RS04615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04615;old_locus_tag=SFV_0830 NC_008258.1 Protein Homology CDS 867541 868749 . - 0 ID=cds898;Parent=gene920;Dbxref=Genbank:WP_000217885.1;Name=WP_000217885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000217885.1;transl_table=11 NC_008258.1 RefSeq gene 868833 869369 . + . ID=gene921;Name=SFV_RS04620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04620;old_locus_tag=SFV_0831 NC_008258.1 Protein Homology CDS 868833 869369 . + 0 ID=cds899;Parent=gene921;Dbxref=Genbank:WP_001297003.1;Name=WP_001297003.1;gbkey=CDS;product=DNA-binding transcriptional regulator;protein_id=WP_001297003.1;transl_table=11 NC_008258.1 RefSeq gene 869544 871229 . - . ID=gene922;Name=SFV_RS04625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04625;old_locus_tag=SFV_0832 NC_008258.1 Protein Homology CDS 869544 871229 . - 0 ID=cds900;Parent=gene922;Dbxref=Genbank:WP_001024865.1;Name=WP_001024865.1;gbkey=CDS;product=transporter;protein_id=WP_001024865.1;transl_table=11 NC_008258.1 RefSeq gene 871499 871876 . + . ID=gene923;Name=SFV_RS04630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04630;old_locus_tag=SFV_0833 NC_008258.1 Protein Homology CDS 871499 871876 . + 0 ID=cds901;Parent=gene923;Dbxref=Genbank:WP_000681108.1;Name=WP_000681108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000681108.1;transl_table=11 NC_008258.1 RefSeq gene 871906 872163 . - . ID=gene924;Name=SFV_RS04635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04635;old_locus_tag=SFV_0834 NC_008258.1 Protein Homology CDS 871906 872163 . - 0 ID=cds902;Parent=gene924;Dbxref=Genbank:WP_001195240.1;Name=WP_001195240.1;Note=functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase%3B also involved in reducing some disulfides in a coupled system with glutathione reductase;gbkey=CDS;product=glutaredoxin;protein_id=WP_001195240.1;transl_table=11 NC_008258.1 RefSeq gene 872323 872610 . + . ID=gene925;Name=SFV_RS04640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04640;old_locus_tag=SFV_0835 NC_008258.1 Protein Homology CDS 872323 872610 . + 0 ID=cds903;Parent=gene925;Dbxref=Genbank:WP_001201560.1;Name=WP_001201560.1;Note=YbjC%3B located in the same operon as the nfsA gene%3B member of the soxRS regulon which mediates in part the increased levels of superoxide in response to oxidative stress%3B induced by paraquat%3B regulated by SoxS%3B unknown function;gbkey=CDS;product=DUF1418 domain-containing protein;protein_id=WP_001201560.1;transl_table=11 NC_008258.1 RefSeq gene 872594 873316 . + . ID=gene926;Name=SFV_RS04645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04645;old_locus_tag=SFV_0836 NC_008258.1 Protein Homology CDS 872594 873316 . + 0 ID=cds904;Parent=gene926;Dbxref=Genbank:WP_000189129.1;Name=WP_000189129.1;Note=NADPH-dependent%3B oxygen-insensitive%3B catalyzes the reduction of nitroaromatic compounds;gbkey=CDS;product=nitroreductase A;protein_id=WP_000189129.1;transl_table=11 NC_008258.1 RefSeq gene 873377 874279 . + . ID=gene927;Name=SFV_RS04650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04650;old_locus_tag=SFV_0837 NC_008258.1 Protein Homology CDS 873377 874279 . + 0 ID=cds905;Parent=gene927;Dbxref=Genbank:WP_000684352.1;Name=WP_000684352.1;Note=responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6;gbkey=CDS;product=ribosomal protein S6--L-glutamate ligase;protein_id=WP_000684352.1;transl_table=11 NC_008258.1 RefSeq gene 874367 874843 . + . ID=gene928;Name=SFV_RS04655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04655;old_locus_tag=SFV_0838 NC_008258.1 Protein Homology CDS 874367 874843 . + 0 ID=cds906;Parent=gene928;Dbxref=Genbank:WP_000203025.1;Name=WP_000203025.1;gbkey=CDS;product=negative regulator of motility%3B multicopy suppressor of coaA(Ts);protein_id=WP_000203025.1;transl_table=11 NC_008258.1 RefSeq gene 875049 875211 . + . ID=gene929;Name=SFV_RS04660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04660;pseudo=true NC_008258.1 Protein Homology CDS 875049 875211 . + 0 ID=cds907;Parent=gene929;exception=annotated by transcript or proteomic data;gbkey=CDS;product=putrescine/spermidine ABC transporter substrate-binding protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 875195 876307 . + . ID=gene930;Name=SFV_RS04665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04665;old_locus_tag=SFV_0839 NC_008258.1 Protein Homology CDS 875195 876307 . + 0 ID=cds908;Parent=gene930;Dbxref=Genbank:WP_000126079.1;Name=WP_000126079.1;gbkey=CDS;product=putrescine ABC transporter substrate-binding protein;protein_id=WP_000126079.1;transl_table=11 NC_008258.1 RefSeq gene 876402 877535 . + . ID=gene931;Name=potG;gbkey=Gene;gene=potG;gene_biotype=pseudogene;locus_tag=SFV_RS04670;pseudo=true NC_008258.1 Protein Homology CDS 876402 877535 . + 0 ID=cds909;Parent=gene931;Note=part of the PotFGHI ATP-dependent putrescine transporter;gbkey=CDS;gene=potG;product=putrescine transporter ATP-binding subunit;pseudo=true;transl_except=(pos:877317..877319%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 877545 878498 . + . ID=gene932;Name=SFV_RS04675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04675;old_locus_tag=SFV_0841 NC_008258.1 Protein Homology CDS 877545 878498 . + 0 ID=cds910;Parent=gene932;Dbxref=Genbank:WP_001093865.1;Name=WP_001093865.1;gbkey=CDS;product=putrescine/spermidine ABC transporter permease;protein_id=WP_001093865.1;transl_table=11 NC_008258.1 RefSeq gene 878495 879340 . + . ID=gene933;Name=SFV_RS04680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04680;old_locus_tag=SFV_0842 NC_008258.1 Protein Homology CDS 878495 879340 . + 0 ID=cds911;Parent=gene933;Dbxref=Genbank:WP_001061676.1;Name=WP_001061676.1;gbkey=CDS;product=putrescine/spermidine ABC transporter permease;protein_id=WP_001061676.1;transl_table=11 NC_008258.1 RefSeq gene 879400 879888 . + . ID=gene934;Name=SFV_RS04685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04685;old_locus_tag=SFV_0843 NC_008258.1 Protein Homology CDS 879400 879888 . + 0 ID=cds912;Parent=gene934;Dbxref=Genbank:WP_000389260.1;Name=WP_000389260.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000389260.1;transl_table=11 NC_008258.1 RefSeq gene 879929 881056 . + . ID=gene935;Name=rumB;gbkey=Gene;gene=rumB;gene_biotype=protein_coding;locus_tag=SFV_RS04690;old_locus_tag=SFV_0844 NC_008258.1 Protein Homology CDS 879929 881056 . + 0 ID=cds913;Parent=gene935;Dbxref=Genbank:WP_001149748.1;Name=WP_001149748.1;Note=RNA uridine methyltransferase B%3B catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA;gbkey=CDS;gene=rumB;product=23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;protein_id=WP_001149748.1;transl_table=11 NC_008258.1 RefSeq gene 881231 881962 . - . ID=gene936;Name=SFV_RS04695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04695;old_locus_tag=SFV_0845 NC_008258.1 Protein Homology CDS 881231 881962 . - 0 ID=cds914;Parent=gene936;Dbxref=Genbank:WP_005105199.1;Name=WP_005105199.1;Note=with ArtPMQI is involved in arginine transport;gbkey=CDS;product=arginine ABC transporter substrate-binding protein;protein_id=WP_005105199.1;transl_table=11 NC_008258.1 RefSeq gene 882254 882922 . - . ID=gene937;Name=artM;gbkey=Gene;gene=artM;gene_biotype=protein_coding;locus_tag=SFV_RS04700;old_locus_tag=SFV_0846 NC_008258.1 Protein Homology CDS 882254 882922 . - 0 ID=cds915;Parent=gene937;Dbxref=Genbank:WP_000464491.1;Name=WP_000464491.1;Note=with ArtPQJI acts to transport arginine across the inner membrane;gbkey=CDS;gene=artM;product=arginine ABC transporter permease ArtM;protein_id=WP_000464491.1;transl_table=11 NC_008258.1 RefSeq gene 882922 883638 . - . ID=gene938;Name=SFV_RS04705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04705;old_locus_tag=SFV_0847 NC_008258.1 Protein Homology CDS 882922 883638 . - 0 ID=cds916;Parent=gene938;Dbxref=Genbank:WP_001001691.1;Name=WP_001001691.1;Note=with ArtPMJI transports arginine across the inner membrane;gbkey=CDS;product=arginine ABC transporter permease ArtQ;protein_id=WP_001001691.1;transl_table=11 NC_008258.1 RefSeq gene 883645 884376 . - . ID=gene939;Name=SFV_RS04710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04710;old_locus_tag=SFV_0848 NC_008258.1 Protein Homology CDS 883645 884376 . - 0 ID=cds917;Parent=gene939;Dbxref=Genbank:WP_000756575.1;Name=WP_000756575.1;Note=with ArtPMQI is involved in arginine transport;gbkey=CDS;product=arginine ABC transporter substrate-binding protein;protein_id=WP_000756575.1;transl_table=11 NC_008258.1 RefSeq gene 884394 885122 . - . ID=gene940;Name=SFV_RS04715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04715;old_locus_tag=SFV_0849 NC_008258.1 Protein Homology CDS 884394 885122 . - 0 ID=cds918;Parent=gene940;Dbxref=Genbank:WP_000027205.1;Name=WP_000027205.1;gbkey=CDS;product=arginine transport ATP-binding protein ArtP;protein_id=WP_000027205.1;transl_table=11 NC_008258.1 RefSeq gene 885340 885855 . - . ID=gene941;Name=SFV_RS04720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04720;old_locus_tag=SFV_0850 NC_008258.1 Protein Homology CDS 885340 885855 . - 0 ID=cds919;Parent=gene941;Dbxref=Genbank:WP_001270662.1;Name=WP_001270662.1;Note=induced during stationary phase and by acivicin (a glutamine analog)%3B regulated by Lrp and RpoS;gbkey=CDS;product=lipoprotein;protein_id=WP_001270662.1;transl_table=11 NC_008258.1 RefSeq gene 885869 886051 . - . ID=gene942;Name=SFV_RS04725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04725 NC_008258.1 Protein Homology CDS 885869 886051 . - 0 ID=cds920;Parent=gene942;Dbxref=Genbank:WP_001303862.1;Name=WP_001303862.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303862.1;transl_table=11 NC_008258.1 RefSeq gene 886471 887715 . + . ID=gene943;Name=SFV_RS04730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04730;old_locus_tag=SFV_0851 NC_008258.1 Protein Homology CDS 886471 887715 . + 0 ID=cds921;Parent=gene943;Dbxref=Genbank:WP_000386465.1;Name=WP_000386465.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000386465.1;transl_table=11 NC_008258.1 RefSeq repeat_region 887708 888484 . + . ID=id124;gbkey=repeat_region NC_008258.1 RefSeq region 887711 888478 . - . ID=id125;gbkey=mobile_element NC_008258.1 RefSeq gene 887726 888229 . - . ID=gene944;Name=SFV_RS04735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04735;old_locus_tag=SFV_0852 NC_008258.1 Protein Homology CDS 887726 888229 . - 0 ID=cds922;Parent=gene944;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 888148 888372 . - . ID=gene945;Name=SFV_RS04740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04740 NC_008258.1 Protein Homology CDS 888148 888372 . - 0 ID=cds923;Parent=gene945;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 888481 889050 . + . ID=gene946;Name=SFV_RS04745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04745;old_locus_tag=SFV_0853;partial=true;pseudo=true;start_range=.,888481 NC_008258.1 Protein Homology CDS 888481 889050 . + 0 ID=cds924;Parent=gene946;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,888481;transl_table=11 NC_008258.1 RefSeq gene 889018 889206 . - . ID=gene947;Name=SFV_RS04750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04750;pseudo=true NC_008258.1 Protein Homology CDS 889018 889206 . - 0 ID=cds925;Parent=gene947;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(889090..889092)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 889261 889584 . + . ID=gene948;Name=SFV_RS04755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04755;old_locus_tag=SFV_0854 NC_008258.1 Protein Homology CDS 889261 889584 . + 0 ID=cds926;Parent=gene948;Dbxref=Genbank:WP_001160737.1;Name=WP_001160737.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001160737.1;transl_table=11 NC_008258.1 RefSeq gene 889581 890411 . + . ID=gene949;Name=SFV_RS04760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04760;old_locus_tag=SFV_0855 NC_008258.1 Protein Homology CDS 889581 890411 . + 0 ID=cds927;Parent=gene949;Dbxref=Genbank:WP_001255158.1;Name=WP_001255158.1;Note=catalyzes the cleavage of the bond between muamic acid and l-alanine;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_001255158.1;transl_table=11 NC_008258.1 RefSeq gene 890408 891421 . - . ID=gene950;Name=SFV_RS04765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04765;old_locus_tag=SFV_0856 NC_008258.1 Protein Homology CDS 890408 891421 . - 0 ID=cds928;Parent=gene950;Dbxref=Genbank:WP_005061294.1;Name=WP_005061294.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005061294.1;transl_table=11 NC_008258.1 RefSeq gene 891520 892950 . - . ID=gene951;Name=SFV_RS04770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04770;old_locus_tag=SFV_0857 NC_008258.1 Protein Homology CDS 891520 892950 . - 0 ID=cds929;Parent=gene951;Dbxref=Genbank:WP_001136528.1;Name=WP_001136528.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001136528.1;transl_table=11 NC_008258.1 RefSeq gene 892961 893962 . - . ID=gene952;Name=SFV_RS04775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04775;old_locus_tag=SFV_0858 NC_008258.1 Protein Homology CDS 892961 893962 . - 0 ID=cds930;Parent=gene952;Dbxref=Genbank:WP_000566372.1;Name=WP_000566372.1;Note=low- specificity%3B catalyzes the formation of acetaldehyde and glycine from L-threonine%3B acts on L-threonine%2C L-allo-threonine%2C L-threo-phenylserine%2C and L-erythro-phenylserine;gbkey=CDS;product=low specificity L-threonine aldolase;protein_id=WP_000566372.1;transl_table=11 NC_008258.1 RefSeq gene 893999 895717 . - . ID=gene953;Name=SFV_RS04780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04780;old_locus_tag=SFV_0859 NC_008258.1 Protein Homology CDS 893999 895717 . - 0 ID=cds931;Parent=gene953;Dbxref=Genbank:WP_000815382.1;Name=WP_000815382.1;Note=catalyzes the formation of acetate from pyruvate;gbkey=CDS;product=pyruvate dehydrogenase;protein_id=WP_000815382.1;transl_table=11 NC_008258.1 RefSeq gene 895850 896818 . - . ID=gene954;Name=SFV_RS04785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04785;old_locus_tag=SFV_0860 NC_008258.1 Protein Homology CDS 895850 896818 . - 0 ID=cds932;Parent=gene954;Dbxref=Genbank:WP_000178655.1;Name=WP_000178655.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000178655.1;transl_table=11 NC_008258.1 RefSeq gene 896830 898482 . - . ID=gene955;Name=SFV_RS04790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04790;old_locus_tag=SFV_0861 NC_008258.1 Protein Homology CDS 896830 898482 . - 0 ID=cds933;Parent=gene955;Dbxref=Genbank:WP_000458816.1;Name=WP_000458816.1;gbkey=CDS;product=hydroxylamine reductase;protein_id=WP_000458816.1;transl_table=11 NC_008258.1 RefSeq gene 898626 899525 . - . ID=gene956;Name=SFV_RS04795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04795;old_locus_tag=SFV_0862 NC_008258.1 Protein Homology CDS 898626 899525 . - 0 ID=cds934;Parent=gene956;Dbxref=Genbank:WP_024260245.1;Name=WP_024260245.1;gbkey=CDS;product=membrane protein;protein_id=WP_024260245.1;transl_table=11 NC_008258.1 RefSeq gene 899982 900677 . - . ID=gene957;Name=SFV_RS04800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04800;old_locus_tag=SFV_0863 NC_008258.1 Protein Homology CDS 899982 900677 . - 0 ID=cds935;Parent=gene957;Dbxref=Genbank:WP_001298299.1;Name=WP_001298299.1;Note=porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure;gbkey=CDS;product=aquaporin Z;protein_id=WP_001298299.1;transl_table=11 NC_008258.1 RefSeq repeat_region 900705 901490 . + . ID=id126;gbkey=repeat_region NC_008258.1 RefSeq region 900714 901481 . - . ID=id127;gbkey=mobile_element NC_008258.1 RefSeq gene 900729 901022 . - . ID=gene958;Name=SFV_RS04805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04805 NC_008258.1 Protein Homology CDS 900729 901022 . - 0 ID=cds936;Parent=gene958;Dbxref=Genbank:WP_000951587.1;Name=WP_000951587.1;gbkey=CDS;product=transposase;protein_id=WP_000951587.1;transl_table=11 NC_008258.1 RefSeq gene 901151 901375 . - . ID=gene959;Name=SFV_RS04810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04810 NC_008258.1 Protein Homology CDS 901151 901375 . - 0 ID=cds937;Parent=gene959;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 901665 901820 . - . ID=gene960;Name=SFV_RS04815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04815 NC_008258.1 Protein Homology CDS 901665 901820 . - 0 ID=cds938;Parent=gene960;Dbxref=Genbank:WP_032155760.1;Name=WP_032155760.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155760.1;transl_table=11 NC_008258.1 RefSeq gene 901878 903536 . + . ID=gene961;Name=SFV_RS04820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04820;old_locus_tag=SFV_0866 NC_008258.1 Protein Homology CDS 901878 903536 . + 0 ID=cds939;Parent=gene961;Dbxref=Genbank:WP_000599818.1;Name=WP_000599818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000599818.1;transl_table=11 NC_008258.1 RefSeq gene 903533 904525 . - . ID=gene962;Name=SFV_RS04825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04825;old_locus_tag=SFV_0867 NC_008258.1 Protein Homology CDS 903533 904525 . - 0 ID=cds940;Parent=gene962;Dbxref=Genbank:WP_000241036.1;Name=WP_000241036.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000241036.1;transl_table=11 NC_008258.1 RefSeq gene 904640 905755 . + . ID=gene963;Name=SFV_RS04830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04830;old_locus_tag=SFV_0869 NC_008258.1 Protein Homology CDS 904640 905755 . + 0 ID=cds941;Parent=gene963;Dbxref=Genbank:WP_000746446.1;Name=WP_000746446.1;Note=confers macrolide resistance via active drug efflux;gbkey=CDS;product=MacA family efflux pump subunit;protein_id=WP_000746446.1;transl_table=11 NC_008258.1 RefSeq gene 905752 907699 . + . ID=gene964;Name=SFV_RS04835;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04835;pseudo=true NC_008258.1 Protein Homology CDS 905752 907699 . + 0 ID=cds942;Parent=gene964;Note=with MacA is involved in the export of macrolide;exception=annotated by transcript or proteomic data;gbkey=CDS;product=macrolide transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 907772 907996 . - . ID=gene965;Name=SFV_RS04840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04840;old_locus_tag=SFV_0871 NC_008258.1 Protein Homology CDS 907772 907996 . - 0 ID=cds943;Parent=gene965;Dbxref=Genbank:WP_000410785.1;Name=WP_000410785.1;Note=inhibits DNA replication at both initiation and elongation steps%3B stationary phase and starvation inducible;gbkey=CDS;product=cold-shock protein CspD;protein_id=WP_000410785.1;transl_table=11 NC_008258.1 RefSeq gene 908319 908639 . + . ID=gene966;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=SFV_RS04845;old_locus_tag=SFV_0872 NC_008258.1 Protein Homology CDS 908319 908639 . + 0 ID=cds944;Parent=gene966;Dbxref=Genbank:WP_000520781.1;Name=WP_000520781.1;Note=involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation%3B binds to the N-terminal domain of the chaperone ClpA;gbkey=CDS;gene=clpS;product=ATP-dependent Clp protease adapter protein ClpS;protein_id=WP_000520781.1;transl_table=11 NC_008258.1 RefSeq gene 908670 910946 . + . ID=gene967;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=SFV_RS04850;old_locus_tag=SFV_0873 NC_008258.1 Protein Homology CDS 908670 910946 . + 0 ID=cds945;Parent=gene967;Dbxref=Genbank:WP_000934051.1;Name=WP_000934051.1;Note=ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease%3B directs protease to specific substrates;gbkey=CDS;gene=clpA;product=ATP-dependent Clp protease ATP-binding subunit ClpA;protein_id=WP_000934051.1;transl_table=11 NC_008258.1 RefSeq repeat_region 911306 911443 . + . ID=id128;gbkey=repeat_region NC_008258.1 RefSeq gene 911349 911436 . - . ID=gene968;Name=SFV_RS04855;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS04855;old_locus_tag=SFV_0874 NC_008258.1 tRNAscan-SE tRNA 911349 911436 . - . ID=rna22;Parent=gene968;anticodon=(pos:complement(911400..911402));gbkey=tRNA;product=tRNA-Ser NC_008258.1 tRNAscan-SE exon 911349 911436 . - . ID=id129;Parent=rna22;anticodon=(pos:complement(911400..911402));gbkey=tRNA;product=tRNA-Ser NC_008258.1 RefSeq gene 911690 911908 . - . ID=gene969;Name=SFV_RS04860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04860;old_locus_tag=SFV_0875 NC_008258.1 Protein Homology CDS 911690 911908 . - 0 ID=cds946;Parent=gene969;Dbxref=Genbank:WP_001040187.1;Name=WP_001040187.1;gbkey=CDS;product=translation initiation factor IF-1;protein_id=WP_001040187.1;transl_table=11 NC_008258.1 RefSeq gene 912193 912897 . - . ID=gene970;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=SFV_RS04865;old_locus_tag=SFV_0876 NC_008258.1 Protein Homology CDS 912193 912897 . - 0 ID=cds947;Parent=gene970;Dbxref=Genbank:WP_001241669.1;Name=WP_001241669.1;Note=leucyltransferase%3B phenylalanyltransferse%3B functions in the N-end rule pathway%3B transfers Leu%2C Phe%2C Met%2C from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys;gbkey=CDS;gene=aat;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=WP_001241669.1;transl_table=11 NC_008258.1 RefSeq gene 912939 914660 . - . ID=gene971;Name=SFV_RS04870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04870;old_locus_tag=SFV_0877 NC_008258.1 Protein Homology CDS 912939 914660 . - 0 ID=cds948;Parent=gene971;Dbxref=Genbank:WP_001202220.1;Name=WP_001202220.1;Note=in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c;gbkey=CDS;product=glutathione ABC transporter ATP-binding protein;protein_id=WP_001202220.1;transl_table=11 NC_008258.1 RefSeq gene 914661 916427 . - . ID=gene972;Name=SFV_RS04875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04875;old_locus_tag=SFV_0878 NC_008258.1 Protein Homology CDS 914661 916427 . - 0 ID=cds949;Parent=gene972;Dbxref=Genbank:WP_001043574.1;Name=WP_001043574.1;Note=in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance%3B important for cytochrome bd and c;gbkey=CDS;product=glutathione ABC transporter ATP-binding protein;protein_id=WP_001043574.1;transl_table=11 NC_008258.1 RefSeq gene 916550 917515 . - . ID=gene973;Name=SFV_RS04880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04880;old_locus_tag=SFV_0879 NC_008258.1 Protein Homology CDS 916550 917515 . - 0 ID=cds950;Parent=gene973;Dbxref=Genbank:WP_000537402.1;Name=WP_000537402.1;Note=catalyzes the transfer of electrons from NADPH to thioredoxin%3B FAD/NAD(P) binding;gbkey=CDS;product=thioredoxin reductase;protein_id=WP_000537402.1;transl_table=11 NC_008258.1 RefSeq gene 918059 918553 . + . ID=gene974;Name=SFV_RS04885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04885;old_locus_tag=SFV_0880 NC_008258.1 Protein Homology CDS 918059 918553 . + 0 ID=cds951;Parent=gene974;Dbxref=Genbank:WP_000228473.1;Name=WP_000228473.1;Note=mediates a global response to leucine%3B acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system;gbkey=CDS;product=leucine-responsive regulatory protein;protein_id=WP_000228473.1;transl_table=11 NC_008258.1 RefSeq gene 918688 922794 . + . ID=gene975;Name=SFV_RS04890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04890;old_locus_tag=SFV_0881 NC_008258.1 Protein Homology CDS 918688 922794 . + 0 ID=cds952;Parent=gene975;Dbxref=Genbank:WP_000077058.1;Name=WP_000077058.1;Note=DNA-binding membrane protein required for chromosome resolution and partitioning;gbkey=CDS;product=cell division protein FtsK;protein_id=WP_000077058.1;transl_table=11 NC_008258.1 RefSeq gene 922949 923560 . + . ID=gene976;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=SFV_RS04895;old_locus_tag=SFV_0882 NC_008258.1 Protein Homology CDS 922949 923560 . + 0 ID=cds953;Parent=gene976;Dbxref=Genbank:WP_001295343.1;Name=WP_001295343.1;Note=participates with LolB in the incorporation of lipoprotein into the outer membrane;gbkey=CDS;gene=lolA;product=outer membrane lipoprotein carrier protein LolA;protein_id=WP_001295343.1;transl_table=11 NC_008258.1 RefSeq gene 923571 924914 . + . ID=gene977;Name=SFV_RS04900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04900;old_locus_tag=SFV_0883 NC_008258.1 Protein Homology CDS 923571 924914 . + 0 ID=cds954;Parent=gene977;Dbxref=Genbank:WP_000067775.1;Name=WP_000067775.1;gbkey=CDS;product=recombinase RarA;protein_id=WP_000067775.1;transl_table=11 NC_008258.1 RefSeq gene 925005 926297 . + . ID=gene978;Name=SFV_RS04905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04905;old_locus_tag=SFV_0884 NC_008258.1 Protein Homology CDS 925005 926297 . + 0 ID=cds955;Parent=gene978;Dbxref=Genbank:WP_000886683.1;Name=WP_000886683.1;gbkey=CDS;product=serine--tRNA ligase;protein_id=WP_000886683.1;transl_table=11 NC_008258.1 RefSeq gene 926537 926836 . + . ID=gene979;Name=SFV_RS04910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04910 NC_008258.1 Protein Homology CDS 926537 926836 . + 0 ID=cds956;Parent=gene979;Dbxref=Genbank:WP_000850243.1;Name=WP_000850243.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit A;protein_id=WP_000850243.1;transl_table=11 NC_008258.1 RefSeq gene 926864 928981 . + . ID=gene980;Name=SFV_RS04915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04915 NC_008258.1 Protein Homology CDS 926864 928981 . + 0 ID=cds957;Parent=gene980;Dbxref=Genbank:WP_001254422.1;Name=WP_001254422.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit A;protein_id=WP_001254422.1;transl_table=11 NC_008258.1 RefSeq gene 928992 929609 . + . ID=gene981;Name=SFV_RS04920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04920;old_locus_tag=SFV_0886 NC_008258.1 Protein Homology CDS 928992 929609 . + 0 ID=cds958;Parent=gene981;Dbxref=Genbank:WP_000213098.1;Name=WP_000213098.1;Note=oxidoreductase%2C Fe-S subunit%3B terminal electron transfer protein for the reduction of DMSO;gbkey=CDS;product=dimethyl sulfoxide reductase subunit B;protein_id=WP_000213098.1;transl_table=11 NC_008258.1 RefSeq gene 929611 930402 . + . ID=gene982;Name=SFV_RS04925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04925;old_locus_tag=SFV_0887 NC_008258.1 Protein Homology CDS 929611 930402 . + 0 ID=cds959;Parent=gene982;Dbxref=Genbank:WP_000534717.1;Name=WP_000534717.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit C;protein_id=WP_000534717.1;transl_table=11 NC_008258.1 RefSeq gene 930438 931064 . - . ID=gene983;Name=SFV_RS04930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04930;old_locus_tag=SFV_0888 NC_008258.1 Protein Homology CDS 930438 931064 . - 0 ID=cds960;Parent=gene983;Dbxref=Genbank:WP_000165870.1;Name=WP_000165870.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000165870.1;transl_table=11 NC_008258.1 RefSeq gene 931379 932527 . + . ID=gene984;Name=SFV_RS04935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04935;old_locus_tag=SFV_0889 NC_008258.1 Protein Homology CDS 931379 932527 . + 0 ID=cds961;Parent=gene984;Dbxref=Genbank:WP_000109301.1;Name=WP_000109301.1;gbkey=CDS;product=MFS transporter;protein_id=WP_000109301.1;transl_table=11 NC_008258.1 RefSeq repeat_region 932756 935713 . + . ID=id130;gbkey=repeat_region NC_008258.1 RefSeq region 932758 934351 . - . ID=id131;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 932840 933514 . + . ID=gene985;Name=SFV_RS04940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04940;old_locus_tag=SFV_0890 NC_008258.1 Protein Homology CDS 932840 933514 . + 0 ID=cds962;Parent=gene985;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq gene 933511 933861 . + . ID=gene986;Name=SFV_RS04945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04945;old_locus_tag=SFV_0891 NC_008258.1 Protein Homology CDS 933511 933861 . + 0 ID=cds963;Parent=gene986;Dbxref=Genbank:WP_005048975.1;Name=WP_005048975.1;gbkey=CDS;product=isocitrate lyase;protein_id=WP_005048975.1;transl_table=11 NC_008258.1 RefSeq gene 933858 934400 . + . ID=gene987;Name=SFV_RS04950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04950;old_locus_tag=SFV_0892 NC_008258.1 Protein Homology CDS 933858 934400 . + 0 ID=cds964;Parent=gene987;Dbxref=Genbank:WP_001058424.1;Name=WP_001058424.1;gbkey=CDS;product=transposase;protein_id=WP_001058424.1;transl_table=11 NC_008258.1 RefSeq region 934352 934761 . + . ID=id132;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 934406 934732 . + . ID=gene988;Name=SFV_RS04955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04955;old_locus_tag=SFV_0893 NC_008258.1 Protein Homology CDS 934406 934732 . + 0 ID=cds965;Parent=gene988;Dbxref=Genbank:WP_000165225.1;Name=WP_000165225.1;gbkey=CDS;product=transposase;protein_id=WP_000165225.1;transl_table=11 NC_008258.1 RefSeq region 934753 935551 . + . ID=id133;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 934753 935509 . + . ID=gene989;Name=SFV_RS04960;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04960;partial=true;pseudo=true;start_range=.,934753 NC_008258.1 Protein Homology CDS 934753 935509 . + 0 ID=cds966;Parent=gene989;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,934753;transl_table=11 NC_008258.1 RefSeq gene 935493 935681 . + . ID=gene990;Name=SFV_RS04965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04965;old_locus_tag=SFV_0895 NC_008258.1 Protein Homology CDS 935493 935681 . + 0 ID=cds967;Parent=gene990;Dbxref=Genbank:WP_000638273.1;Name=WP_000638273.1;gbkey=CDS;product=transposase;protein_id=WP_000638273.1;transl_table=11 NC_008258.1 RefSeq region 935552 935713 . - . ID=id134;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 935715 935918 . - . ID=gene991;Name=SFV_RS04970;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04970;partial=true;pseudo=true;start_range=.,935715 NC_008258.1 Protein Homology CDS 935715 935918 . - 0 ID=cds968;Parent=gene991;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,935715;transl_table=11 NC_008258.1 RefSeq gene 936018 936161 . + . ID=gene992;Name=SFV_RS04975;end_range=936161,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS04975;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 936018 936161 . + 0 ID=cds969;Parent=gene992;end_range=936161,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 936153 936934 . + . ID=id135;gbkey=repeat_region NC_008258.1 RefSeq region 936160 936927 . + . ID=id136;gbkey=mobile_element NC_008258.1 RefSeq gene 936266 936490 . + . ID=gene993;Name=SFV_RS04980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04980 NC_008258.1 Protein Homology CDS 936266 936490 . + 0 ID=cds970;Parent=gene993;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 936409 936912 . + . ID=gene994;Name=SFV_RS04985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04985;old_locus_tag=SFV_0897 NC_008258.1 Protein Homology CDS 936409 936912 . + 0 ID=cds971;Parent=gene994;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 936914 937702 . + . ID=gene995;Name=SFV_RS04990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04990;old_locus_tag=SFV_0898 NC_008258.1 Protein Homology CDS 936914 937702 . + 0 ID=cds972;Parent=gene995;Dbxref=Genbank:WP_000445022.1;Name=WP_000445022.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000445022.1;transl_table=11 NC_008258.1 RefSeq gene 937703 938086 . - . ID=gene996;Name=SFV_RS04995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS04995 NC_008258.1 Protein Homology CDS 937703 938086 . - 0 ID=cds973;Parent=gene996;Dbxref=Genbank:WP_000959225.1;Name=WP_000959225.1;gbkey=CDS;product=amino acid permease;protein_id=WP_000959225.1;transl_table=11 NC_008258.1 RefSeq repeat_region 938089 939358 . + . ID=id137;gbkey=repeat_region NC_008258.1 RefSeq region 938092 939355 . + . ID=id138;gbkey=mobile_element NC_008258.1 RefSeq gene 938156 938458 . + . ID=gene997;Name=SFV_RS05000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05000;old_locus_tag=SFV_0900 NC_008258.1 Protein Homology CDS 938156 938458 . + 0 ID=cds974;Parent=gene997;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 938599 939312 . + . ID=gene998;Name=SFV_RS05005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05005;old_locus_tag=SFV_0901 NC_008258.1 Protein Homology CDS 938599 939312 . + 0 ID=cds975;Parent=gene998;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 939353 939613 . + . ID=gene999;Name=SFV_RS05010;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05010;partial=true;pseudo=true;start_range=.,939353 NC_008258.1 Protein Homology CDS 939353 939613 . + 0 ID=cds976;Parent=gene999;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,939353;transl_table=11 NC_008258.1 RefSeq gene 939695 940435 . - . ID=gene1000;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=SFV_RS05015;old_locus_tag=SFV_0902 NC_008258.1 Protein Homology CDS 939695 940435 . - 0 ID=cds977;Parent=gene1000;Dbxref=Genbank:WP_000111043.1;Name=WP_000111043.1;Note=activates pyruvate formate-lyase 1 under anaerobic conditions;gbkey=CDS;gene=pflA;product=pyruvate formate-lyase 1-activating enzyme;protein_id=WP_000111043.1;transl_table=11 NC_008258.1 RefSeq gene 940627 942909 . - . ID=gene1001;Name=SFV_RS05020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05020;old_locus_tag=SFV_0903 NC_008258.1 Protein Homology CDS 940627 942909 . - 0 ID=cds978;Parent=gene1001;Dbxref=Genbank:WP_001292813.1;Name=WP_001292813.1;Note=formate acetyltransferase%3B catalyzes the formation of formate and acetyl-CoA from pyruvate;gbkey=CDS;product=keto-acid formate acetyltransferase;protein_id=WP_001292813.1;transl_table=11 NC_008258.1 RefSeq gene 942964 943821 . - . ID=gene1002;Name=SFV_RS05025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05025;old_locus_tag=SFV_0904 NC_008258.1 Protein Homology CDS 942964 943821 . - 0 ID=cds979;Parent=gene1002;Dbxref=Genbank:WP_000642544.1;Name=WP_000642544.1;gbkey=CDS;product=formate transporter FocA;protein_id=WP_000642544.1;transl_table=11 NC_008258.1 RefSeq gene 944227 945987 . - . ID=gene1003;Name=SFV_RS05030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05030;old_locus_tag=SFV_0905 NC_008258.1 Protein Homology CDS 944227 945987 . - 0 ID=cds980;Parent=gene1003;Dbxref=Genbank:WP_024260246.1;Name=WP_024260246.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260246.1;transl_table=11 NC_008258.1 RefSeq gene 946117 946743 . + . ID=gene1004;Name=SFV_RS05035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05035;pseudo=true NC_008258.1 Protein Homology CDS 946117 946743 . + 0 ID=cds981;Parent=gene1004;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 946942 948030 . + . ID=gene1005;Name=SFV_RS05040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05040;old_locus_tag=SFV_0907 NC_008258.1 Protein Homology CDS 946942 948030 . + 0 ID=cds982;Parent=gene1005;Dbxref=Genbank:WP_000057149.1;Name=WP_000057149.1;Note=catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate%3B catalyzes 4 phosphohydroxy L-threonine from 2-oxo 3 hydroxy 4- phosphobutanoate%3B required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine;gbkey=CDS;product=phosphoserine aminotransferase;protein_id=WP_000057149.1;transl_table=11 NC_008258.1 RefSeq gene 948101 949384 . + . ID=gene1006;Name=SFV_RS05045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05045;old_locus_tag=SFV_0908 NC_008258.1 Protein Homology CDS 948101 949384 . + 0 ID=cds983;Parent=gene1006;Dbxref=Genbank:WP_000445222.1;Name=WP_000445222.1;gbkey=CDS;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=WP_000445222.1;transl_table=11 NC_008258.1 RefSeq repeat_region 949442 950870 . + . ID=id139;gbkey=repeat_region NC_008258.1 RefSeq region 949443 950870 . + . ID=id140;gbkey=mobile_element NC_008258.1 RefSeq gene 949528 950856 . + . ID=gene1007;Name=SFV_RS05050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05050;old_locus_tag=SFV_0909 NC_008258.1 Protein Homology CDS 949528 950856 . + 0 ID=cds984;Parent=gene1007;Dbxref=Genbank:WP_000547019.1;Name=WP_000547019.1;gbkey=CDS;product=transposase;protein_id=WP_000547019.1;transl_table=11 NC_008258.1 RefSeq gene 950992 951756 . + . ID=gene1008;Name=SFV_RS05055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05055;old_locus_tag=SFV_0910 NC_008258.1 Protein Homology CDS 950992 951756 . + 0 ID=cds985;Parent=gene1008;Dbxref=Genbank:WP_024260247.1;Name=WP_024260247.1;gbkey=CDS;product=metalloprotease;protein_id=WP_024260247.1;transl_table=11 NC_008258.1 RefSeq gene 951929 952612 . + . ID=gene1009;Name=cmk;gbkey=Gene;gene=cmk;gene_biotype=protein_coding;locus_tag=SFV_RS05060;old_locus_tag=SFV_0911 NC_008258.1 Protein Homology CDS 951929 952612 . + 0 ID=cds986;Parent=gene1009;Dbxref=Genbank:WP_000125016.1;Name=WP_000125016.1;Note=Catalyzes the formation of (d)CDP from ATP and (d)CMP;gbkey=CDS;gene=cmk;product=cytidylate kinase;protein_id=WP_000125016.1;transl_table=11 NC_008258.1 RefSeq gene 952723 954396 . + . ID=gene1010;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=SFV_RS05065;old_locus_tag=SFV_0912 NC_008258.1 Protein Homology CDS 952723 954396 . + 0 ID=cds987;Parent=gene1010;Dbxref=Genbank:WP_000140327.1;Name=WP_000140327.1;Note=in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit%3B autoregulates expression via a C-terminal domain%3B in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats%3B the S1 nucleic acid-binding domain is found associated with other proteins;gbkey=CDS;gene=rpsA;product=30S ribosomal protein S1;protein_id=WP_000140327.1;transl_table=11 NC_008258.1 RefSeq gene 954556 954840 . + . ID=gene1011;Name=ihfB;gbkey=Gene;gene=ihfB;gene_biotype=protein_coding;locus_tag=SFV_RS05070;old_locus_tag=SFV_0913 NC_008258.1 Protein Homology CDS 954556 954840 . + 0 ID=cds988;Parent=gene1011;Dbxref=Genbank:WP_000167336.1;Name=WP_000167336.1;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;gbkey=CDS;gene=ihfB;product=integration host factor subunit beta;protein_id=WP_000167336.1;transl_table=11 NC_008258.1 RefSeq gene 955048 957307 . + . ID=gene1012;Name=SFV_RS05075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05075;pseudo=true NC_008258.1 Protein Homology CDS 955048 957307 . + 0 ID=cds989;Parent=gene1012;exception=annotated by transcript or proteomic data;gbkey=CDS;product=competence protein ComEC;pseudo=true;transl_except=(pos:955399..955401%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 957344 959092 . + . ID=gene1013;Name=SFV_RS05080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05080;old_locus_tag=SFV_0915 NC_008258.1 Protein Homology CDS 957344 959092 . + 0 ID=cds990;Parent=gene1013;Dbxref=Genbank:WP_000551266.1;Name=WP_000551266.1;Note=involved in the transport of lipid A across the inner membrane;gbkey=CDS;product=lipid A export ATP-binding/permease MsbA;protein_id=WP_000551266.1;transl_table=11 NC_008258.1 RefSeq gene 959089 960075 . + . ID=gene1014;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=SFV_RS05085;old_locus_tag=SFV_0916 NC_008258.1 Protein Homology CDS 959089 960075 . + 0 ID=cds991;Parent=gene1014;Dbxref=Genbank:WP_000570533.1;Name=WP_000570533.1;Note=transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1%2C4'-bis-phosphate;gbkey=CDS;gene=lpxK;product=tetraacyldisaccharide 4'-kinase;protein_id=WP_000570533.1;transl_table=11 NC_008258.1 RefSeq gene 960112 961344 . + . ID=gene1015;Name=SFV_RS05090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05090;old_locus_tag=SFV_0917 NC_008258.1 Protein Homology CDS 960112 961344 . + 0 ID=cds992;Parent=gene1015;Dbxref=Genbank:WP_000056529.1;Name=WP_000056529.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000056529.1;transl_table=11 NC_008258.1 RefSeq gene 961396 961578 . + . ID=gene1016;Name=SFV_RS05095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05095;old_locus_tag=SFV_0918 NC_008258.1 Protein Homology CDS 961396 961578 . + 0 ID=cds993;Parent=gene1016;Dbxref=Genbank:WP_000350058.1;Name=WP_000350058.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000350058.1;transl_table=11 NC_008258.1 RefSeq gene 961575 962321 . + . ID=gene1017;Name=SFV_RS05100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05100;old_locus_tag=SFV_0919 NC_008258.1 Protein Homology CDS 961575 962321 . + 0 ID=cds994;Parent=gene1017;Dbxref=Genbank:WP_000011599.1;Name=WP_000011599.1;Note=CMP-2-keto-3-deoxyoctulosonic acid synthetase%3B catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS;gbkey=CDS;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=WP_000011599.1;transl_table=11 NC_008258.1 RefSeq gene 962475 963368 . + . ID=gene1018;Name=SFV_RS05105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05105;old_locus_tag=SFV_0920 NC_008258.1 Protein Homology CDS 962475 963368 . + 0 ID=cds995;Parent=gene1018;Dbxref=Genbank:WP_000436926.1;Name=WP_000436926.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000436926.1;transl_table=11 NC_008258.1 RefSeq gene 963345 964124 . - . ID=gene1019;Name=SFV_RS05110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05110;old_locus_tag=SFV_0921 NC_008258.1 Protein Homology CDS 963345 964124 . - 0 ID=cds996;Parent=gene1019;Dbxref=Genbank:WP_000899599.1;Name=WP_000899599.1;gbkey=CDS;product=membrane protein;protein_id=WP_000899599.1;transl_table=11 NC_008258.1 RefSeq gene 964260 965045 . + . ID=gene1020;Name=SFV_RS05115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05115;old_locus_tag=SFV_0922 NC_008258.1 Protein Homology CDS 964260 965045 . + 0 ID=cds997;Parent=gene1020;Dbxref=Genbank:WP_011587199.1;Name=WP_011587199.1;gbkey=CDS;product=S-adenosyl-L-methionine-dependent methyltransferase;protein_id=WP_011587199.1;transl_table=11 NC_008258.1 RefSeq gene 965042 966364 . + . ID=gene1021;Name=SFV_RS05120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05120;old_locus_tag=SFV_0923 NC_008258.1 Protein Homology CDS 965042 966364 . + 0 ID=cds998;Parent=gene1021;Dbxref=Genbank:WP_001288850.1;Name=WP_001288850.1;Note=acts with MukB and MukE to condense the chromosome and allow for segregation during cell division;gbkey=CDS;product=chromosome partition protein MukF;protein_id=WP_001288850.1;transl_table=11 NC_008258.1 RefSeq gene 966345 967049 . + . ID=gene1022;Name=SFV_RS05125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05125;old_locus_tag=SFV_0924 NC_008258.1 Protein Homology CDS 966345 967049 . + 0 ID=cds999;Parent=gene1022;Dbxref=Genbank:WP_001295931.1;Name=WP_001295931.1;Note=acts with MukB and MukF to condense the chromosome and allow for segregation during cell division;gbkey=CDS;product=condesin subunit E;protein_id=WP_001295931.1;transl_table=11 NC_008258.1 RefSeq gene 967049 971509 . + . ID=gene1023;Name=mukB;gbkey=Gene;gene=mukB;gene_biotype=protein_coding;locus_tag=SFV_RS05130;old_locus_tag=SFV_0925 NC_008258.1 Protein Homology CDS 967049 971509 . + 0 ID=cds1000;Parent=gene1023;Dbxref=Genbank:WP_000572706.1;Name=WP_000572706.1;Note=SMC (structural maintenance of chromosomes) family of proteins%3B involved in chromosome condensatin and partitioning%3B forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ%3B mutations result in cell division defects;gbkey=CDS;gene=mukB;product=chromosome partition protein MukB;protein_id=WP_000572706.1;transl_table=11 NC_008258.1 RefSeq repeat_region 971586 973016 . + . ID=id141;gbkey=repeat_region NC_008258.1 RefSeq region 971587 973014 . + . ID=id142;gbkey=mobile_element NC_008258.1 RefSeq gene 971672 973000 . + . ID=gene1024;Name=SFV_RS05135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05135;old_locus_tag=SFV_0926 NC_008258.1 Protein Homology CDS 971672 973000 . + 0 ID=cds1001;Parent=gene1024;Dbxref=Genbank:WP_000547279.1;Name=WP_000547279.1;gbkey=CDS;product=transposase;protein_id=WP_000547279.1;transl_table=11 NC_008258.1 RefSeq gene 973208 975055 . + . ID=gene1025;Name=SFV_RS05140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05140;old_locus_tag=SFV_0927 NC_008258.1 Protein Homology CDS 973208 975055 . + 0 ID=cds1002;Parent=gene1025;Dbxref=Genbank:WP_000925979.1;Name=WP_000925979.1;Note=catalyzes the formation of a meso-diaminopimelyl- meso-diaminopimelyl crosslink;gbkey=CDS;product=murein transpeptidase;protein_id=WP_000925979.1;transl_table=11 NC_008258.1 RefSeq gene 975237 975785 . + . ID=gene1026;Name=SFV_RS05145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05145;old_locus_tag=SFV_0928 NC_008258.1 Protein Homology CDS 975237 975785 . + 0 ID=cds1003;Parent=gene1026;Dbxref=Genbank:WP_001295932.1;Name=WP_001295932.1;gbkey=CDS;product=M15A protease-related family periplasmic protein;protein_id=WP_001295932.1;transl_table=11 NC_008258.1 RefSeq gene 975812 976459 . + . ID=gene1027;Name=SFV_RS05150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05150;old_locus_tag=SFV_0929 NC_008258.1 Protein Homology CDS 975812 976459 . + 0 ID=cds1004;Parent=gene1027;Dbxref=Genbank:WP_001109487.1;Name=WP_001109487.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001109487.1;transl_table=11 NC_008258.1 RefSeq gene 976682 977872 . - . ID=gene1028;Name=SFV_RS05155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05155;old_locus_tag=SFV_0930 NC_008258.1 Protein Homology CDS 976682 977872 . - 0 ID=cds1005;Parent=gene1028;Dbxref=Genbank:WP_000462668.1;Name=WP_000462668.1;gbkey=CDS;product=aromatic amino acid aminotransferase;protein_id=WP_000462668.1;transl_table=11 NC_008258.1 RefSeq gene 977871 978041 . + . ID=gene1029;Name=SFV_RS05160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05160 NC_008258.1 Protein Homology CDS 977871 978041 . + 0 ID=cds1006;Parent=gene1029;Dbxref=Genbank:WP_000196607.1;Name=WP_000196607.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000196607.1;transl_table=11 NC_008258.1 RefSeq gene 978057 979145 . - . ID=gene1030;Name=SFV_RS05165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05165;old_locus_tag=SFV_0931 NC_008258.1 Protein Homology CDS 978057 979145 . - 0 ID=cds1007;Parent=gene1030;Dbxref=Genbank:WP_000977920.1;Name=WP_000977920.1;gbkey=CDS;product=outer membrane protein F;protein_id=WP_000977920.1;transl_table=11 NC_008258.1 RefSeq gene 979746 981146 . - . ID=gene1031;Name=SFV_RS05170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05170;old_locus_tag=SFV_0932 NC_008258.1 Protein Homology CDS 979746 981146 . - 0 ID=cds1008;Parent=gene1031;Dbxref=Genbank:WP_000117881.1;Name=WP_000117881.1;gbkey=CDS;product=asparagine--tRNA ligase;protein_id=WP_000117881.1;transl_table=11 NC_008258.1 RefSeq gene 981315 982517 . - . ID=gene1032;Name=SFV_RS05175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05175;old_locus_tag=SFV_0933 NC_008258.1 Protein Homology CDS 981315 982517 . - 0 ID=cds1009;Parent=gene1032;Dbxref=Genbank:WP_001297200.1;Name=WP_001297200.1;Note=catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate;gbkey=CDS;product=nicotinate phosphoribosyltransferase;protein_id=WP_001297200.1;transl_table=11 NC_008258.1 RefSeq gene 982783 985398 . + . ID=gene1033;Name=pepN;gbkey=Gene;gene=pepN;gene_biotype=protein_coding;locus_tag=SFV_RS05180;old_locus_tag=SFV_0934 NC_008258.1 Protein Homology CDS 982783 985398 . + 0 ID=cds1010;Parent=gene1033;Dbxref=Genbank:WP_000193825.1;Name=WP_000193825.1;gbkey=CDS;gene=pepN;product=aminopeptidase N;protein_id=WP_000193825.1;transl_table=11 NC_008258.1 RefSeq gene 985605 986372 . - . ID=gene1034;Name=ssuB;gbkey=Gene;gene=ssuB;gene_biotype=protein_coding;locus_tag=SFV_RS05185;old_locus_tag=SFV_0935 NC_008258.1 Protein Homology CDS 985605 986372 . - 0 ID=cds1011;Parent=gene1034;Dbxref=Genbank:WP_001090477.1;Name=WP_001090477.1;Note=part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic substrate-binding subunit%2C SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;gene=ssuB;product=aliphatic sulfonate ABC transporter ATP-binding protein;protein_id=WP_001090477.1;transl_table=11 NC_008258.1 RefSeq gene 986369 987022 . - . ID=gene1035;Name=ssuC;gbkey=Gene;gene=ssuC;gene_biotype=protein_coding;locus_tag=SFV_RS05190;old_locus_tag=SFV_0936 NC_008258.1 Protein Homology CDS 986369 987022 . - 0 ID=cds1012;Parent=gene1035;Dbxref=Genbank:WP_000627165.1;Name=WP_000627165.1;Note=part of the ABC type transport system for alkanesulfonate SsuABC%3B SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;gene=ssuC;product=taurine ABC transporter permease;protein_id=WP_000627165.1;transl_table=11 NC_008258.1 RefSeq repeat_region 986983 988318 . + . ID=id143;gbkey=repeat_region;gene=ssuC NC_008258.1 RefSeq region 986986 988316 . - . ID=id144;gbkey=mobile_element;gene=ssuC NC_008258.1 RefSeq gene 986997 987902 . - . ID=gene1036;Name=SFV_RS05195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05195;old_locus_tag=SFV_0937 NC_008258.1 Protein Homology CDS 986997 987902 . - 0 ID=cds1013;Parent=gene1036;Dbxref=Genbank:WP_011069312.1;Name=WP_011069312.1;gbkey=CDS;product=integrase;protein_id=WP_011069312.1;transl_table=11 NC_008258.1 RefSeq gene 987860 988225 . - . ID=gene1037;Name=SFV_RS05200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05200;old_locus_tag=SFV_0938 NC_008258.1 Protein Homology CDS 987860 988225 . - 0 ID=cds1014;Parent=gene1037;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 988314 988496 . - . ID=gene1038;Name=SFV_RS05205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05205 NC_008258.1 Protein Homology CDS 988314 988496 . - 0 ID=cds1015;Parent=gene1038;Dbxref=Genbank:WP_000235193.1;Name=WP_000235193.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000235193.1;transl_table=11 NC_008258.1 RefSeq gene 988508 989653 . - . ID=gene1039;Name=SFV_RS05210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05210;old_locus_tag=SFV_0939 NC_008258.1 Protein Homology CDS 988508 989653 . - 0 ID=cds1016;Parent=gene1039;Dbxref=Genbank:WP_000056001.1;Name=WP_000056001.1;Note=catalyzes the release of sulfite from alkanesulfonates;gbkey=CDS;product=alkanesulfonate monooxygenase;protein_id=WP_000056001.1;transl_table=11 NC_008258.1 RefSeq gene 989650 990609 . - . ID=gene1040;Name=SFV_RS05215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05215;old_locus_tag=SFV_0940 NC_008258.1 Protein Homology CDS 989650 990609 . - 0 ID=cds1017;Parent=gene1040;Dbxref=Genbank:WP_001244322.1;Name=WP_001244322.1;Note=part of the ABC type transport system SsuABC for aliphatic sulfonates%3B with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease;gbkey=CDS;product=sulfonate ABC transporter substrate-binding protein;protein_id=WP_001244322.1;transl_table=11 NC_008258.1 RefSeq gene 990602 991177 . - . ID=gene1041;Name=SFV_RS05220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05220;old_locus_tag=SFV_0941 NC_008258.1 Protein Homology CDS 990602 991177 . - 0 ID=cds1018;Parent=gene1041;Dbxref=Genbank:WP_001263929.1;Name=WP_001263929.1;gbkey=CDS;product=FMN reductase;protein_id=WP_001263929.1;transl_table=11 NC_008258.1 RefSeq repeat_region 991253 992036 . + . ID=id145;gbkey=repeat_region NC_008258.1 RefSeq region 991260 992027 . + . ID=id146;gbkey=mobile_element NC_008258.1 RefSeq gene 991366 991590 . + . ID=gene1042;Name=SFV_RS05225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05225 NC_008258.1 Protein Homology CDS 991366 991590 . + 0 ID=cds1019;Parent=gene1042;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 991617 992012 . + . ID=gene1043;Name=SFV_RS05230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05230 NC_008258.1 Protein Homology CDS 991617 992012 . + 0 ID=cds1020;Parent=gene1043;Dbxref=Genbank:WP_024260248.1;Name=WP_024260248.1;gbkey=CDS;product=transposase;protein_id=WP_024260248.1;transl_table=11 NC_008258.1 RefSeq repeat_region 992088 993520 . + . ID=id147;gbkey=repeat_region NC_008258.1 RefSeq gene 992310 992771 . + . ID=gene1044;Name=SFV_RS05235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05235;old_locus_tag=SFV_0944 NC_008258.1 Protein Homology CDS 992310 992771 . + 0 ID=cds1021;Parent=gene1044;Dbxref=Genbank:WP_000750301.1;Name=WP_000750301.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000750301.1;transl_table=11 NC_008258.1 RefSeq region 992750 993517 . - . ID=id148;gbkey=mobile_element NC_008258.1 RefSeq gene 992765 993058 . - . ID=gene1045;Name=SFV_RS05240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05240;old_locus_tag=SFV_0945 NC_008258.1 Protein Homology CDS 992765 993058 . - 0 ID=cds1022;Parent=gene1045;Dbxref=Genbank:WP_000951587.1;Name=WP_000951587.1;gbkey=CDS;product=transposase;protein_id=WP_000951587.1;transl_table=11 NC_008258.1 RefSeq gene 993187 993411 . - . ID=gene1046;Name=SFV_RS05245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05245 NC_008258.1 Protein Homology CDS 993187 993411 . - 0 ID=cds1023;Parent=gene1046;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 993739 994413 . + . ID=gene1047;Name=SFV_RS05250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05250;old_locus_tag=SFV_0948 NC_008258.1 Protein Homology CDS 993739 994413 . + 0 ID=cds1024;Parent=gene1047;Dbxref=Genbank:WP_000218747.1;Name=WP_000218747.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000218747.1;transl_table=11 NC_008258.1 RefSeq gene 994438 997038 . + . ID=gene1048;Name=SFV_RS05255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05255;old_locus_tag=SFV_0949 NC_008258.1 Protein Homology CDS 994438 997038 . + 0 ID=cds1025;Parent=gene1048;Dbxref=Genbank:WP_000286330.1;Name=WP_000286330.1;Note=involved in fimbria production;gbkey=CDS;product=outer membrane usher protein;protein_id=WP_000286330.1;transl_table=11 NC_008258.1 RefSeq gene 997029 998012 . + . ID=gene1049;Name=SFV_RS05260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05260;old_locus_tag=SFV_0950 NC_008258.1 Protein Homology CDS 997029 998012 . + 0 ID=cds1026;Parent=gene1049;Dbxref=Genbank:WP_005107218.1;Name=WP_005107218.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_005107218.1;transl_table=11 NC_008258.1 RefSeq gene 998200 998652 . + . ID=gene1050;Name=SFV_RS05265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05265;old_locus_tag=SFV_0951 NC_008258.1 Protein Homology CDS 998200 998652 . + 0 ID=cds1027;Parent=gene1050;Dbxref=Genbank:WP_000548456.1;Name=WP_000548456.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000548456.1;transl_table=11 NC_008258.1 RefSeq gene 998660 999175 . + . ID=gene1051;Name=SFV_RS05270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05270;old_locus_tag=SFV_0952 NC_008258.1 Protein Homology CDS 998660 999175 . + 0 ID=cds1028;Parent=gene1051;Dbxref=Genbank:WP_000919489.1;Name=WP_000919489.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000919489.1;transl_table=11 NC_008258.1 RefSeq gene 999168 999878 . + . ID=gene1052;Name=SFV_RS05275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05275;old_locus_tag=SFV_0953 NC_008258.1 Protein Homology CDS 999168 999878 . + 0 ID=cds1029;Parent=gene1052;Dbxref=Genbank:WP_044023807.1;Name=WP_044023807.1;gbkey=CDS;product=pili assembly chaperone;protein_id=WP_044023807.1;transl_table=11 NC_008258.1 RefSeq gene 999989 1000999 . + . ID=gene1053;Name=SFV_RS05280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05280;old_locus_tag=SFV_0954 NC_008258.1 Protein Homology CDS 999989 1000999 . + 0 ID=cds1030;Parent=gene1053;Dbxref=Genbank:WP_001370288.1;Name=WP_001370288.1;Note=catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway%3B uses a flavin nucleotide as an essential cofactor%3B class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus%2C which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors;gbkey=CDS;product=dihydroorotate dehydrogenase;protein_id=WP_001370288.1;transl_table=11 NC_008258.1 RefSeq gene 1001173 1001715 . + . ID=gene1054;Name=SFV_RS05285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05285;old_locus_tag=SFV_0955 NC_008258.1 Protein Homology CDS 1001173 1001715 . + 0 ID=cds1031;Parent=gene1054;Dbxref=Genbank:WP_004991542.1;Name=WP_004991542.1;gbkey=CDS;product=cell division protein ZapC;protein_id=WP_004991542.1;transl_table=11 NC_008258.1 RefSeq gene 1001712 1002821 . - . ID=gene1055;Name=SFV_RS05290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05290;old_locus_tag=SFV_0956;pseudo=true NC_008258.1 Protein Homology CDS 1001712 1002821 . - 0 ID=cds1032;Parent=gene1055;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1003065 1005173 . + . ID=gene1056;Name=rlmL;gbkey=Gene;gene=rlmL;gene_biotype=protein_coding;locus_tag=SFV_RS05295;old_locus_tag=SFV_0957 NC_008258.1 Protein Homology CDS 1003065 1005173 . + 0 ID=cds1033;Parent=gene1056;Dbxref=Genbank:WP_001086554.1;Name=WP_001086554.1;Note=catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA;gbkey=CDS;gene=rlmL;product=ribosomal RNA large subunit methyltransferase K/L;protein_id=WP_001086554.1;transl_table=11 NC_008258.1 RefSeq gene 1005185 1007092 . + . ID=gene1057;Name=SFV_RS05300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05300;old_locus_tag=SFV_0958 NC_008258.1 Protein Homology CDS 1005185 1007092 . + 0 ID=cds1034;Parent=gene1057;Dbxref=Genbank:WP_000053059.1;Name=WP_000053059.1;Note=Uup%3B in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity%3B mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000053059.1;transl_table=11 NC_008258.1 RefSeq gene 1007222 1008475 . + . ID=gene1058;Name=SFV_RS05305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05305;old_locus_tag=SFV_0959 NC_008258.1 Protein Homology CDS 1007222 1008475 . + 0 ID=cds1035;Parent=gene1058;Dbxref=Genbank:WP_000333176.1;Name=WP_000333176.1;gbkey=CDS;product=paraquat-inducible protein A;protein_id=WP_000333176.1;transl_table=11 NC_008258.1 RefSeq gene 1008480 1010120 . + . ID=gene1059;Name=SFV_RS05310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05310;old_locus_tag=SFV_0960 NC_008258.1 Protein Homology CDS 1008480 1010120 . + 0 ID=cds1036;Parent=gene1059;Dbxref=Genbank:WP_000445541.1;Name=WP_000445541.1;gbkey=CDS;product=paraquat-inducible protein B;protein_id=WP_000445541.1;transl_table=11 NC_008258.1 RefSeq gene 1010117 1010680 . + . ID=gene1060;Name=SFV_RS05315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05315;old_locus_tag=SFV_0961 NC_008258.1 Protein Homology CDS 1010117 1010680 . + 0 ID=cds1037;Parent=gene1060;Dbxref=Genbank:WP_000759120.1;Name=WP_000759120.1;gbkey=CDS;product=DUF330 domain-containing protein;protein_id=WP_000759120.1;transl_table=11 NC_008258.1 RefSeq gene 1010936 1011103 . + . ID=gene1061;Name=SFV_RS05320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05320 NC_008258.1 Protein Homology CDS 1010936 1011103 . + 0 ID=cds1038;Parent=gene1061;Dbxref=Genbank:WP_011110566.1;Name=WP_011110566.1;gbkey=CDS;product=ribosome modulation factor;protein_id=WP_011110566.1;transl_table=11 NC_008258.1 RefSeq gene 1011173 1011691 . - . ID=gene1062;Name=SFV_RS05325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05325;old_locus_tag=SFV_0962 NC_008258.1 Protein Homology CDS 1011173 1011691 . - 0 ID=cds1039;Parent=gene1062;Dbxref=Genbank:WP_005047466.1;Name=WP_005047466.1;Note=catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2%2C3-decenoyl-ACP or 3%2C4-decenoyl-ACP;gbkey=CDS;product=3-hydroxydecanoyl-ACP dehydratase;protein_id=WP_005047466.1;transl_table=11 NC_008258.1 RefSeq gene 1011760 1013520 . - . ID=gene1063;Name=SFV_RS05330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05330;old_locus_tag=SFV_0963 NC_008258.1 Protein Homology CDS 1011760 1013520 . - 0 ID=cds1040;Parent=gene1063;Dbxref=Genbank:WP_000156486.1;Name=WP_000156486.1;gbkey=CDS;product=lon protease;protein_id=WP_000156486.1;transl_table=11 NC_008258.1 RefSeq gene 1013705 1014157 . + . ID=gene1064;Name=SFV_RS05335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05335;old_locus_tag=SFV_0964 NC_008258.1 Protein Homology CDS 1013705 1014157 . + 0 ID=cds1041;Parent=gene1064;Dbxref=Genbank:WP_000877161.1;Name=WP_000877161.1;gbkey=CDS;product=macrodomain Ter protein;protein_id=WP_000877161.1;transl_table=11 NC_008258.1 RefSeq gene 1014233 1015279 . - . ID=gene1065;Name=SFV_RS05340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05340;old_locus_tag=SFV_0965 NC_008258.1 Protein Homology CDS 1014233 1015279 . - 0 ID=cds1042;Parent=gene1065;Dbxref=Genbank:WP_005105223.1;Name=WP_005105223.1;Note=OmpA is believed to be a porin%2C involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli%2C and it is known to play a role as a phage receptor%2C a mediator of F-factor dependent conjugation%2C and in maintaining the structural shape of the outer membrane%3B 3a%3B II*%3B G%3B d;gbkey=CDS;product=membrane protein;protein_id=WP_005105223.1;transl_table=11 NC_008258.1 RefSeq gene 1015635 1016144 . - . ID=gene1066;Name=SFV_RS05345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05345;old_locus_tag=SFV_0966 NC_008258.1 Protein Homology CDS 1015635 1016144 . - 0 ID=cds1043;Parent=gene1066;Dbxref=Genbank:WP_000288715.1;Name=WP_000288715.1;gbkey=CDS;product=cell division inhibitor SulA;protein_id=WP_000288715.1;transl_table=11 NC_008258.1 RefSeq gene 1016363 1016788 . + . ID=gene1067;Name=SFV_RS05350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05350 NC_008258.1 Protein Homology CDS 1016363 1016788 . + 0 ID=cds1044;Parent=gene1067;Dbxref=Genbank:WP_000839156.1;Name=WP_000839156.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000839156.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1016771 1018105 . + . ID=id149;gbkey=repeat_region NC_008258.1 RefSeq region 1016773 1018103 . + . ID=id150;gbkey=mobile_element NC_008258.1 RefSeq gene 1016864 1017229 . + . ID=gene1068;Name=SFV_RS05355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05355;old_locus_tag=SFV_0968 NC_008258.1 Protein Homology CDS 1016864 1017229 . + 0 ID=cds1045;Parent=gene1068;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1017187 1018092 . + . ID=gene1069;Name=SFV_RS05360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05360;old_locus_tag=SFV_0969 NC_008258.1 Protein Homology CDS 1017187 1018092 . + 0 ID=cds1046;Parent=gene1069;Dbxref=Genbank:WP_000376512.1;Name=WP_000376512.1;gbkey=CDS;product=integrase;protein_id=WP_000376512.1;transl_table=11 NC_008258.1 RefSeq gene 1018104 1018328 . + . ID=gene1070;Name=SFV_RS05365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05365;partial=true;pseudo=true;start_range=.,1018104 NC_008258.1 Protein Homology CDS 1018104 1018328 . + 0 ID=cds1047;Parent=gene1070;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=Crp/Fnr family transcriptional regulator;pseudo=true;start_range=.,1018104;transl_table=11 NC_008258.1 RefSeq gene 1018291 1020444 . - . ID=gene1071;Name=SFV_RS05370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05370;old_locus_tag=SFV_0970 NC_008258.1 Protein Homology CDS 1018291 1020444 . - 0 ID=cds1048;Parent=gene1071;Dbxref=Genbank:WP_005109120.1;Name=WP_005109120.1;gbkey=CDS;product=membrane protein;protein_id=WP_005109120.1;transl_table=11 NC_008258.1 RefSeq gene 1020463 1020909 . - . ID=gene1072;Name=SFV_RS05375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05375;old_locus_tag=SFV_0971 NC_008258.1 Protein Homology CDS 1020463 1020909 . - 0 ID=cds1049;Parent=gene1072;Dbxref=Genbank:WP_001261235.1;Name=WP_001261235.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001261235.1;transl_table=11 NC_008258.1 RefSeq gene 1021032 1023086 . + . ID=gene1073;Name=helD;gbkey=Gene;gene=helD;gene_biotype=protein_coding;locus_tag=SFV_RS05380;old_locus_tag=SFV_0972 NC_008258.1 Protein Homology CDS 1021032 1023086 . + 0 ID=cds1050;Parent=gene1073;Dbxref=Genbank:WP_024260251.1;Name=WP_024260251.1;Note=catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand;gbkey=CDS;gene=helD;product=DNA helicase IV;protein_id=WP_024260251.1;transl_table=11 NC_008258.1 RefSeq gene 1023118 1023576 . - . ID=gene1074;Name=mgsA;gbkey=Gene;gene=mgsA;gene_biotype=protein_coding;locus_tag=SFV_RS05385;old_locus_tag=SFV_0973 NC_008258.1 Protein Homology CDS 1023118 1023576 . - 0 ID=cds1051;Parent=gene1074;Dbxref=Genbank:WP_024260252.1;Name=WP_024260252.1;Note=catalyzes the formation of methylglyoxal from glycerone phosphate;gbkey=CDS;gene=mgsA;product=methylglyoxal synthase;protein_id=WP_024260252.1;transl_table=11 NC_008258.1 RefSeq gene 1023672 1024334 . - . ID=gene1075;Name=SFV_RS05390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05390;old_locus_tag=SFV_0974 NC_008258.1 Protein Homology CDS 1023672 1024334 . - 0 ID=cds1052;Parent=gene1075;Dbxref=Genbank:WP_000847787.1;Name=WP_000847787.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000847787.1;transl_table=11 NC_008258.1 RefSeq gene 1024374 1024544 . - . ID=gene1076;Name=SFV_RS05395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05395 NC_008258.1 Protein Homology CDS 1024374 1024544 . - 0 ID=cds1053;Parent=gene1076;Dbxref=Genbank:WP_001301416.1;Name=WP_001301416.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001301416.1;transl_table=11 NC_008258.1 RefSeq gene 1024507 1024920 . + . ID=gene1077;Name=SFV_RS05400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05400;old_locus_tag=SFV_0975 NC_008258.1 Protein Homology CDS 1024507 1024920 . + 0 ID=cds1054;Parent=gene1077;Dbxref=Genbank:WP_000665217.1;Name=WP_000665217.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000665217.1;transl_table=11 NC_008258.1 RefSeq gene 1024965 1025282 . - . ID=gene1078;Name=SFV_RS05405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05405;old_locus_tag=SFV_0976 NC_008258.1 Protein Homology CDS 1024965 1025282 . - 0 ID=cds1055;Parent=gene1078;Dbxref=Genbank:WP_001295356.1;Name=WP_001295356.1;gbkey=CDS;product=heat-shock protein HspQ;protein_id=WP_001295356.1;transl_table=11 NC_008258.1 RefSeq gene 1025340 1026530 . - . ID=gene1079;Name=SFV_RS05410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05410;old_locus_tag=SFV_0977 NC_008258.1 Protein Homology CDS 1025340 1026530 . - 0 ID=cds1056;Parent=gene1079;Dbxref=Genbank:WP_000116282.1;Name=WP_000116282.1;Note=SAM-dependent%3Bcatalyzes the methylation of cytosine at position 1962 of the 23S rRNA;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase I;protein_id=WP_000116282.1;transl_table=11 NC_008258.1 RefSeq gene 1026625 1026903 . + . ID=gene1080;Name=SFV_RS05415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05415 NC_008258.1 Protein Homology CDS 1026625 1026903 . + 0 ID=cds1057;Parent=gene1080;Dbxref=Genbank:WP_000034173.1;Name=WP_000034173.1;Note=catalyzes the hydrolysis of acylphosphate;gbkey=CDS;product=acylphosphatase;protein_id=WP_000034173.1;transl_table=11 NC_008258.1 RefSeq gene 1026900 1027229 . - . ID=gene1081;Name=SFV_RS05420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05420;old_locus_tag=SFV_0978 NC_008258.1 Protein Homology CDS 1026900 1027229 . - 0 ID=cds1058;Parent=gene1081;Dbxref=Genbank:WP_000904442.1;Name=WP_000904442.1;Note=transfers sulfur from TusBCD complex to MnmA%3B involved in thiouridation of U34 position of some tRNAs;gbkey=CDS;product=sulfurtransferase TusE;protein_id=WP_000904442.1;transl_table=11 NC_008258.1 RefSeq gene 1027320 1027979 . - . ID=gene1082;Name=SFV_RS05425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05425;old_locus_tag=SFV_0979 NC_008258.1 Protein Homology CDS 1027320 1027979 . - 0 ID=cds1059;Parent=gene1082;Dbxref=Genbank:WP_000375134.1;Name=WP_000375134.1;Note=binds to the HflBKC complex which modulates FtsH activity;gbkey=CDS;product=hypothetical protein;protein_id=WP_000375134.1;transl_table=11 NC_008258.1 RefSeq gene 1028186 1028273 . - . ID=gene1083;Name=SFV_RS05430;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS05430;old_locus_tag=SFV_0980 NC_008258.1 tRNAscan-SE tRNA 1028186 1028273 . - . ID=rna23;Parent=gene1083;anticodon=(pos:complement(1028237..1028239));gbkey=tRNA;product=tRNA-Ser NC_008258.1 tRNAscan-SE exon 1028186 1028273 . - . ID=id151;Parent=rna23;anticodon=(pos:complement(1028237..1028239));gbkey=tRNA;product=tRNA-Ser NC_008258.1 RefSeq gene 1028699 1029817 . + . ID=gene1084;Name=SFV_RS05435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05435;old_locus_tag=SFV_0981 NC_008258.1 Protein Homology CDS 1028699 1029817 . + 0 ID=cds1060;Parent=gene1084;Dbxref=Genbank:WP_001058327.1;Name=WP_001058327.1;gbkey=CDS;product=hydrogenase;protein_id=WP_001058327.1;transl_table=11 NC_008258.1 RefSeq gene 1029814 1031607 . + . ID=gene1085;Name=SFV_RS05440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05440;old_locus_tag=SFV_0982 NC_008258.1 Protein Homology CDS 1029814 1031607 . + 0 ID=cds1061;Parent=gene1085;Dbxref=Genbank:WP_000107384.1;Name=WP_000107384.1;gbkey=CDS;product=hydrogenase-1 large chain;protein_id=WP_000107384.1;transl_table=11 NC_008258.1 RefSeq gene 1031626 1032333 . + . ID=gene1086;Name=SFV_RS05445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05445;old_locus_tag=SFV_0983 NC_008258.1 Protein Homology CDS 1031626 1032333 . + 0 ID=cds1062;Parent=gene1086;Dbxref=Genbank:WP_001186413.1;Name=WP_001186413.1;gbkey=CDS;product=hydrogenase 1 b-type cytochrome subunit;protein_id=WP_001186413.1;transl_table=11 NC_008258.1 RefSeq gene 1032330 1032917 . + . ID=gene1087;Name=SFV_RS05450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05450;old_locus_tag=SFV_0984 NC_008258.1 Protein Homology CDS 1032330 1032917 . + 0 ID=cds1063;Parent=gene1087;Dbxref=Genbank:WP_000003673.1;Name=WP_000003673.1;Note=HyaD%3B endopeptidase involved in the cleavage of the C-terminus end of HyaB (the large subunit of hydrogenase 1);gbkey=CDS;product=hydrogenase 1 maturation protease;protein_id=WP_000003673.1;transl_table=11 NC_008258.1 RefSeq gene 1032914 1033312 . + . ID=gene1088;Name=SFV_RS05455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05455;old_locus_tag=SFV_0985 NC_008258.1 Protein Homology CDS 1032914 1033312 . + 0 ID=cds1064;Parent=gene1088;Dbxref=Genbank:WP_000063973.1;Name=WP_000063973.1;Note=involved in processing hydrogenase proteins HyaA and HyaB;gbkey=CDS;product=hydrogenase-1 operon protein HyaE;protein_id=WP_000063973.1;transl_table=11 NC_008258.1 RefSeq gene 1033309 1034166 . + . ID=gene1089;Name=SFV_RS05460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05460;old_locus_tag=SFV_0986 NC_008258.1 Protein Homology CDS 1033309 1034166 . + 0 ID=cds1065;Parent=gene1089;Dbxref=Genbank:WP_000004910.1;Name=WP_000004910.1;gbkey=CDS;product=hydrogenase-1 operon protein HyaF;protein_id=WP_000004910.1;transl_table=11 NC_008258.1 RefSeq gene 1034300 1035844 . + . ID=gene1090;Name=SFV_RS05465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05465;old_locus_tag=SFV_0987 NC_008258.1 Protein Homology CDS 1034300 1035844 . + 0 ID=cds1066;Parent=gene1090;Dbxref=Genbank:WP_000263563.1;Name=WP_000263563.1;Note=part of the aerobic respiratory chain%3B catalyzes the ubiquinol to ubiquinone;gbkey=CDS;product=cytochrome BD oxidase subunit I;protein_id=WP_000263563.1;transl_table=11 NC_008258.1 RefSeq gene 1035856 1036992 . + . ID=gene1091;Name=SFV_RS05470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05470;old_locus_tag=SFV_0988 NC_008258.1 Protein Homology CDS 1035856 1036992 . + 0 ID=cds1067;Parent=gene1091;Dbxref=Genbank:WP_000460804.1;Name=WP_000460804.1;gbkey=CDS;product=cytochrome BD oxidase subunit II;protein_id=WP_000460804.1;transl_table=11 NC_008258.1 RefSeq gene 1037004 1037096 . + . ID=gene1092;Name=SFV_RS05475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05475 NC_008258.1 Protein Homology CDS 1037004 1037096 . + 0 ID=cds1068;Parent=gene1092;Dbxref=Genbank:WP_000270305.1;Name=WP_000270305.1;gbkey=CDS;product=cytochrome bd-II oxidase subunit;protein_id=WP_000270305.1;transl_table=11 NC_008258.1 RefSeq gene 1037176 1038474 . + . ID=gene1093;Name=SFV_RS05480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05480;old_locus_tag=SFV_0989 NC_008258.1 Protein Homology CDS 1037176 1038474 . + 0 ID=cds1069;Parent=gene1093;Dbxref=Genbank:WP_005105229.1;Name=WP_005105229.1;gbkey=CDS;product=phosphoanhydride phosphorylase;protein_id=WP_005105229.1;transl_table=11 NC_008258.1 RefSeq gene 1038589 1040769 . - . ID=gene1094;Name=SFV_RS05485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05485;old_locus_tag=SFV_0990 NC_008258.1 Protein Homology CDS 1038589 1040769 . - 0 ID=cds1070;Parent=gene1094;Dbxref=Genbank:WP_000208630.1;Name=WP_000208630.1;gbkey=CDS;product=protein tyrosine kinase;protein_id=WP_000208630.1;transl_table=11 NC_008258.1 RefSeq gene 1040789 1041235 . - . ID=gene1095;Name=SFV_RS05490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05490;old_locus_tag=SFV_0991 NC_008258.1 Protein Homology CDS 1040789 1041235 . - 0 ID=cds1071;Parent=gene1095;Dbxref=Genbank:WP_000057871.1;Name=WP_000057871.1;Note=Wzb shows phosphatase activity towards the autophosphorylated Wzc protein%2C which induces colanic acid biosynthesis%3B catalyzes the phosphorylation of UDP-glucose dehydrogenase%2C an enzyme involved in colanic acid biosynthesis;gbkey=CDS;product=protein-tyrosine phosphatase;protein_id=WP_000057871.1;transl_table=11 NC_008258.1 RefSeq gene 1041223 1042362 . - . ID=gene1096;Name=SFV_RS05495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05495;old_locus_tag=SFV_0992 NC_008258.1 Protein Homology CDS 1041223 1042362 . - 0 ID=cds1072;Parent=gene1096;Dbxref=Genbank:WP_001295357.1;Name=WP_001295357.1;Note=required for the translocation of capsular polysaccharide through the outer membrane;gbkey=CDS;product=O-antigen capsule outer membrane auxillary protein export channel;protein_id=WP_001295357.1;transl_table=11 NC_008258.1 RefSeq gene 1042408 1044504 . - . ID=gene1097;Name=SFV_RS05500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05500;old_locus_tag=SFV_0993 NC_008258.1 Protein Homology CDS 1042408 1044504 . - 0 ID=cds1073;Parent=gene1097;Dbxref=Genbank:WP_000742319.1;Name=WP_000742319.1;gbkey=CDS;product=membrane protein;protein_id=WP_000742319.1;transl_table=11 NC_008258.1 RefSeq gene 1044504 1045250 . - . ID=gene1098;Name=SFV_RS05505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05505;old_locus_tag=SFV_0994 NC_008258.1 Protein Homology CDS 1044504 1045250 . - 0 ID=cds1074;Parent=gene1098;Dbxref=Genbank:WP_001038092.1;Name=WP_001038092.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001038092.1;transl_table=11 NC_008258.1 RefSeq gene 1045247 1045891 . - . ID=gene1099;Name=SFV_RS05510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05510;old_locus_tag=SFV_0995 NC_008258.1 Protein Homology CDS 1045247 1045891 . - 0 ID=cds1075;Parent=gene1099;Dbxref=Genbank:WP_001247604.1;Name=WP_001247604.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001247604.1;transl_table=11 NC_008258.1 RefSeq gene 1045998 1046303 . - . ID=gene1100;Name=SFV_RS05515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05515;old_locus_tag=SFV_0996 NC_008258.1 Protein Homology CDS 1045998 1046303 . - 0 ID=cds1076;Parent=gene1100;Dbxref=Genbank:WP_005083611.1;Name=WP_005083611.1;gbkey=CDS;product=membrane protein;protein_id=WP_005083611.1;transl_table=11 NC_008258.1 RefSeq gene 1046745 1046957 . - . ID=gene1101;Name=SFV_RS05520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05520;old_locus_tag=SFV_0997 NC_008258.1 Protein Homology CDS 1046745 1046957 . - 0 ID=cds1077;Parent=gene1101;Dbxref=Genbank:WP_000087763.1;Name=WP_000087763.1;gbkey=CDS;product=cold-shock protein CspH;protein_id=WP_000087763.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1047255 1048027 . + . ID=id152;gbkey=repeat_region NC_008258.1 RefSeq region 1047257 1048024 . + . ID=id153;gbkey=mobile_element NC_008258.1 RefSeq gene 1047363 1047587 . + . ID=gene1102;Name=SFV_RS05525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05525 NC_008258.1 Protein Homology CDS 1047363 1047587 . + 0 ID=cds1078;Parent=gene1102;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1047506 1048009 . + . ID=gene1103;Name=SFV_RS05530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05530;old_locus_tag=SFV_0999 NC_008258.1 Protein Homology CDS 1047506 1048009 . + 0 ID=cds1079;Parent=gene1103;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 1048019 1048231 . + . ID=gene1104;Name=SFV_RS05535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05535;old_locus_tag=SFV_1000 NC_008258.1 Protein Homology CDS 1048019 1048231 . + 0 ID=cds1080;Parent=gene1104;Dbxref=Genbank:WP_024259211.1;Name=WP_024259211.1;gbkey=CDS;product=cold-shock protein CspG;protein_id=WP_024259211.1;transl_table=11 NC_008258.1 RefSeq gene 1048405 1048635 . + . ID=gene1105;Name=SFV_RS05540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05540 NC_008258.1 Protein Homology CDS 1048405 1048635 . + 0 ID=cds1081;Parent=gene1105;Dbxref=Genbank:WP_044023810.1;Name=WP_044023810.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_044023810.1;transl_table=11 NC_008258.1 RefSeq gene 1048625 1048798 . + . ID=gene1106;Name=SFV_RS05545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05545;old_locus_tag=SFV_1001 NC_008258.1 Protein Homology CDS 1048625 1048798 . + 0 ID=cds1082;Parent=gene1106;Dbxref=Genbank:WP_001019195.1;Name=WP_001019195.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001019195.1;transl_table=11 NC_008258.1 RefSeq gene 1048847 1049920 . - . ID=gene1107;Name=SFV_RS05550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05550;old_locus_tag=SFV_1002 NC_008258.1 Protein Homology CDS 1048847 1049920 . - 0 ID=cds1083;Parent=gene1107;Dbxref=Genbank:WP_000818447.1;Name=WP_000818447.1;gbkey=CDS;product=electron transporter YccM;protein_id=WP_000818447.1;transl_table=11 NC_008258.1 RefSeq gene 1050022 1052358 . - . ID=gene1108;Name=SFV_RS05555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05555;old_locus_tag=SFV_1004 NC_008258.1 Protein Homology CDS 1050022 1052358 . - 0 ID=cds1084;Parent=gene1108;Dbxref=Genbank:WP_000505135.1;Name=WP_000505135.1;Note=Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide;gbkey=CDS;product=two-component system sensor histidine kinase/response regulator;protein_id=WP_000505135.1;transl_table=11 NC_008258.1 RefSeq gene 1052471 1053499 . + . ID=gene1109;Name=SFV_RS05560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05560;old_locus_tag=SFV_1003 NC_008258.1 Protein Homology CDS 1052471 1053499 . + 0 ID=cds1085;Parent=gene1109;Dbxref=Genbank:WP_001264948.1;Name=WP_001264948.1;Note=periplasmic sensory protein associated with the TorRS two-component regulatory system;gbkey=CDS;product=TMAO reductase;protein_id=WP_001264948.1;transl_table=11 NC_008258.1 RefSeq gene 1053472 1054164 . - . ID=gene1110;Name=SFV_RS05565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05565;old_locus_tag=SFV_1005 NC_008258.1 Protein Homology CDS 1053472 1054164 . - 0 ID=cds1086;Parent=gene1110;Dbxref=Genbank:WP_001120114.1;Name=WP_001120114.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001120114.1;transl_table=11 NC_008258.1 RefSeq gene 1054251 1055423 . + . ID=gene1111;Name=SFV_RS05570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05570;old_locus_tag=SFV_1006 NC_008258.1 Protein Homology CDS 1054251 1055423 . + 0 ID=cds1087;Parent=gene1111;Dbxref=Genbank:WP_011587204.1;Name=WP_011587204.1;Note=with TorA forms the inducible trimethylamine N-oxide reductase which transfers electrons from menaquinones first to TorC then to TorA;gbkey=CDS;product=trimethylamine N-oxide reductase cytochrome C subunit;protein_id=WP_011587204.1;transl_table=11 NC_008258.1 RefSeq gene 1055423 1057969 . + . ID=gene1112;Name=SFV_RS05575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05575;old_locus_tag=SFV_1007 NC_008258.1 Protein Homology CDS 1055423 1057969 . + 0 ID=cds1088;Parent=gene1112;Dbxref=Genbank:WP_001063113.1;Name=WP_001063113.1;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;gbkey=CDS;product=trimethylamine N-oxide reductase I catalytic subunit;protein_id=WP_001063113.1;transl_table=11 NC_008258.1 RefSeq gene 1057933 1058157 . + . ID=gene1113;Name=torD;end_range=1058157,.;gbkey=Gene;gene=torD;gene_biotype=pseudogene;locus_tag=SFV_RS05580;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1057933 1058157 . + 0 ID=cds1089;Parent=gene1113;Note=TorD%3B involved in the biogenesis of torA%3B acts on torA before the insertion of the molybdenum cofactor and%2C as a result%2C probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor;end_range=1058157,.;exception=unextendable partial coding region;gbkey=CDS;gene=torD;partial=true;product=chaperone protein TorD;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1058152 1058929 . + . ID=id154;gbkey=repeat_region;gene=torD NC_008258.1 RefSeq region 1058157 1058924 . - . ID=id155;gbkey=mobile_element;gene=torD NC_008258.1 RefSeq gene 1058172 1058675 . - . ID=gene1114;Name=SFV_RS05585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05585;old_locus_tag=SFV_1009 NC_008258.1 Protein Homology CDS 1058172 1058675 . - 0 ID=cds1090;Parent=gene1114;Dbxref=Genbank:WP_005048937.1;Name=WP_005048937.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005048937.1;transl_table=11 NC_008258.1 RefSeq gene 1058594 1058818 . - . ID=gene1115;Name=SFV_RS05590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05590 NC_008258.1 Protein Homology CDS 1058594 1058818 . - 0 ID=cds1091;Parent=gene1115;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1058902 1059342 . + . ID=gene1116;Name=torD;gbkey=Gene;gene=torD;gene_biotype=pseudogene;locus_tag=SFV_RS05595;partial=true;pseudo=true;start_range=.,1058902 NC_008258.1 Protein Homology CDS 1058902 1059342 . + 0 ID=cds1092;Parent=gene1116;Note=TorD%3B involved in the biogenesis of torA%3B acts on torA before the insertion of the molybdenum cofactor and%2C as a result%2C probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor;exception=unextendable partial coding region;gbkey=CDS;gene=torD;partial=true;product=chaperone protein TorD;pseudo=true;start_range=.,1058902;transl_table=11 NC_008258.1 RefSeq gene 1059435 1059740 . - . ID=gene1117;Name=SFV_RS05600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05600;old_locus_tag=SFV_1011 NC_008258.1 Protein Homology CDS 1059435 1059740 . - 0 ID=cds1093;Parent=gene1117;Dbxref=Genbank:WP_000024560.1;Name=WP_000024560.1;Note=with CpbA modulates the activity of the dnaK chaperone system%3B interacts with CbpA and inhibits both the DnaJ-like co-chaperone activity and the DNA binding activity of CbpA;gbkey=CDS;product=chaperone modulatory protein CbpM;protein_id=WP_000024560.1;transl_table=11 NC_008258.1 RefSeq gene 1059740 1060660 . - . ID=gene1118;Name=SFV_RS05605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05605;old_locus_tag=SFV_1012 NC_008258.1 Protein Homology CDS 1059740 1060660 . - 0 ID=cds1094;Parent=gene1118;Dbxref=Genbank:WP_000420619.1;Name=WP_000420619.1;Note=functional analog of DnaJ%3B co-chaperone with DnaK%2C molecular chaperone in an adaptive response to environmental stresses other than heat shock;gbkey=CDS;product=curved DNA-binding protein;protein_id=WP_000420619.1;transl_table=11 NC_008258.1 RefSeq gene 1060921 1062177 . + . ID=gene1119;Name=SFV_RS05610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05610;old_locus_tag=SFV_1013 NC_008258.1 Protein Homology CDS 1060921 1062177 . + 0 ID=cds1095;Parent=gene1119;Dbxref=Genbank:WP_000535350.1;Name=WP_000535350.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000535350.1;transl_table=11 NC_008258.1 RefSeq gene 1062470 1063711 . + . ID=gene1120;Name=SFV_RS05615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05615;old_locus_tag=SFV_1014 NC_008258.1 Protein Homology CDS 1062470 1063711 . + 0 ID=cds1096;Parent=gene1120;Dbxref=Genbank:WP_001044290.1;Name=WP_001044290.1;gbkey=CDS;product=glucose-1-phosphatase/inositol phosphatase;protein_id=WP_001044290.1;transl_table=11 NC_008258.1 RefSeq gene 1063749 1063976 . - . ID=gene1121;Name=SFV_RS05620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05620;old_locus_tag=SFV_1015 NC_008258.1 Protein Homology CDS 1063749 1063976 . - 0 ID=cds1097;Parent=gene1121;Dbxref=Genbank:WP_001143120.1;Name=WP_001143120.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001143120.1;transl_table=11 NC_008258.1 RefSeq gene 1063997 1064593 . - . ID=gene1122;Name=SFV_RS05625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05625;old_locus_tag=SFV_1016 NC_008258.1 Protein Homology CDS 1063997 1064593 . - 0 ID=cds1098;Parent=gene1122;Dbxref=Genbank:WP_001151437.1;Name=WP_001151437.1;Note=catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NAD(P)H dehydrogenase (quinone);protein_id=WP_001151437.1;transl_table=11 NC_008258.1 RefSeq gene 1065155 1066483 . - . ID=gene1123;Name=SFV_RS05630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05630;old_locus_tag=SFV_1018 NC_008258.1 Protein Homology CDS 1065155 1066483 . - 0 ID=cds1099;Parent=gene1123;Dbxref=Genbank:WP_005105236.1;Name=WP_005105236.1;gbkey=CDS;product=pyrimidine permease;protein_id=WP_005105236.1;transl_table=11 NC_008258.1 RefSeq gene 1066504 1066998 . - . ID=gene1124;Name=SFV_RS05635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05635;old_locus_tag=SFV_1019 NC_008258.1 Protein Homology CDS 1066504 1066998 . - 0 ID=cds1100;Parent=gene1124;Dbxref=Genbank:WP_001028096.1;Name=WP_001028096.1;gbkey=CDS;product=FMN reductase;protein_id=WP_001028096.1;transl_table=11 NC_008258.1 RefSeq gene 1067009 1067599 . - . ID=gene1125;Name=SFV_RS05640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05640;old_locus_tag=SFV_1020 NC_008258.1 Protein Homology CDS 1067009 1067599 . - 0 ID=cds1101;Parent=gene1125;Dbxref=Genbank:WP_001001165.1;Name=WP_001001165.1;gbkey=CDS;product=malonic semialdehyde reductase RutE;protein_id=WP_001001165.1;transl_table=11 NC_008258.1 RefSeq gene 1067609 1068409 . - . ID=gene1126;Name=SFV_RS05645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05645;old_locus_tag=SFV_1021 NC_008258.1 Protein Homology CDS 1067609 1068409 . - 0 ID=cds1102;Parent=gene1126;Dbxref=Genbank:WP_000777663.1;Name=WP_000777663.1;gbkey=CDS;product=aminoacrylate hydrolase;protein_id=WP_000777663.1;transl_table=11 NC_008258.1 RefSeq gene 1068417 1068803 . - . ID=gene1127;Name=SFV_RS05650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05650;old_locus_tag=SFV_1022 NC_008258.1 Protein Homology CDS 1068417 1068803 . - 0 ID=cds1103;Parent=gene1127;Dbxref=Genbank:WP_001126782.1;Name=WP_001126782.1;gbkey=CDS;product=aminoacrylate peracid reductase;protein_id=WP_001126782.1;transl_table=11 NC_008258.1 RefSeq gene 1068815 1069507 . - . ID=gene1128;Name=SFV_RS05655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05655;old_locus_tag=SFV_1023 NC_008258.1 Protein Homology CDS 1068815 1069507 . - 0 ID=cds1104;Parent=gene1128;Dbxref=Genbank:WP_005047409.1;Name=WP_005047409.1;gbkey=CDS;product=amidohydrolase;protein_id=WP_005047409.1;transl_table=11 NC_008258.1 RefSeq gene 1069507 1070598 . - . ID=gene1129;Name=SFV_RS05660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05660;old_locus_tag=SFV_1024 NC_008258.1 Protein Homology CDS 1069507 1070598 . - 0 ID=cds1105;Parent=gene1129;Dbxref=Genbank:WP_024260253.1;Name=WP_024260253.1;gbkey=CDS;product=pyrimidine monooxygenase;protein_id=WP_024260253.1;transl_table=11 NC_008258.1 RefSeq gene 1070886 1071524 . + . ID=gene1130;Name=SFV_RS05665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05665;old_locus_tag=SFV_1025 NC_008258.1 Protein Homology CDS 1070886 1071524 . + 0 ID=cds1106;Parent=gene1130;Dbxref=Genbank:WP_000191701.1;Name=WP_000191701.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000191701.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1071625 1073458 . + . ID=id156;gbkey=repeat_region NC_008258.1 RefSeq region 1071630 1073458 . - . ID=id157;gbkey=mobile_element NC_008258.1 RefSeq gene 1071818 1073005 . - . ID=gene1131;Name=SFV_RS05670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05670;old_locus_tag=SFV_1026 NC_008258.1 Protein Homology CDS 1071818 1073005 . - 0 ID=cds1107;Parent=gene1131;Dbxref=Genbank:WP_000937578.1;Name=WP_000937578.1;gbkey=CDS;product=transposase;protein_id=WP_000937578.1;transl_table=11 NC_008258.1 RefSeq gene 1073005 1073370 . - . ID=gene1132;Name=SFV_RS05675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05675;old_locus_tag=SFV_1027 NC_008258.1 Protein Homology CDS 1073005 1073370 . - 0 ID=cds1108;Parent=gene1132;Dbxref=Genbank:WP_000124119.1;Name=WP_000124119.1;gbkey=CDS;product=transposase;protein_id=WP_000124119.1;transl_table=11 NC_008258.1 RefSeq gene 1073426 1074133 . + . ID=gene1133;Name=SFV_RS05680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05680;old_locus_tag=SFV_1028 NC_008258.1 Protein Homology CDS 1073426 1074133 . + 0 ID=cds1109;Parent=gene1133;Dbxref=Genbank:WP_024260254.1;Name=WP_024260254.1;gbkey=CDS;product=ferrous iron permease EfeU;protein_id=WP_024260254.1;transl_table=11 NC_008258.1 RefSeq gene 1074191 1075318 . + . ID=gene1134;Name=SFV_RS05685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05685;old_locus_tag=SFV_1029 NC_008258.1 Protein Homology CDS 1074191 1075318 . + 0 ID=cds1110;Parent=gene1134;Dbxref=Genbank:WP_000154398.1;Name=WP_000154398.1;Note=with EfeUB forms an iron transport system which is silent in E. coli K-12 due to a mutation in EfeU;gbkey=CDS;product=iron uptake system component EfeO;protein_id=WP_000154398.1;transl_table=11 NC_008258.1 RefSeq gene 1075324 1076589 . + . ID=gene1135;Name=SFV_RS05690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05690;old_locus_tag=SFV_1030 NC_008258.1 Protein Homology CDS 1075324 1076589 . + 0 ID=cds1111;Parent=gene1135;Dbxref=Genbank:WP_001199452.1;Name=WP_001199452.1;gbkey=CDS;product=deferrochelatase/peroxidase EfeB;protein_id=WP_001199452.1;transl_table=11 NC_008258.1 RefSeq gene 1077197 1077985 . + . ID=gene1136;Name=SFV_RS05695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05695 NC_008258.1 Protein Homology CDS 1077197 1077985 . + 0 ID=cds1112;Parent=gene1136;Dbxref=Genbank:WP_044024290.1;Name=WP_044024290.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024290.1;transl_table=11 NC_008258.1 RefSeq gene 1078035 1078448 . - . ID=gene1137;Name=pgaD;gbkey=Gene;gene=pgaD;gene_biotype=protein_coding;locus_tag=SFV_RS05700;old_locus_tag=SFV_1032 NC_008258.1 Protein Homology CDS 1078035 1078448 . - 0 ID=cds1113;Parent=gene1137;Dbxref=Genbank:WP_001061095.1;Name=WP_001061095.1;Note=in Yersinia this gene is involved in biofilm formation and hemin adsorption%3B in Escherichia coli it is involved in PGA biosynthesis and export;gbkey=CDS;gene=pgaD;product=poly-beta-1%2C6-N-acetyl-D-glucosamine biosynthesis protein PgaD;protein_id=WP_001061095.1;transl_table=11 NC_008258.1 RefSeq gene 1078450 1079688 . - . ID=gene1138;Name=SFV_RS05705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05705;old_locus_tag=SFV_1033 NC_008258.1 Protein Homology CDS 1078450 1079688 . - 0 ID=cds1114;Parent=gene1138;Dbxref=Genbank:WP_024260255.1;Name=WP_024260255.1;Note=predicted polysaccharide polymerase involved in biofilm formation%3B required for the synthesis of the beta-1%2C6-N-acetylglucosamine polysaccharide%3B PgaC%3B in Yersinia the HmsR protein is an inner membrane protein;gbkey=CDS;product=N-glycosyltransferase;protein_id=WP_024260255.1;transl_table=11 NC_008258.1 RefSeq gene 1079768 1081009 . - . ID=gene1139;Name=pgaB;end_range=1081009,.;gbkey=Gene;gene=pgaB;gene_biotype=pseudogene;locus_tag=SFV_RS05710;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1079768 1081009 . - 0 ID=cds1115;Parent=gene1139;Note=in Yersinia this protein is involved in biofilm formation and hemin adsorption%3B related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA) export;end_range=1081009,.;gbkey=CDS;gene=pgaB;partial=true;product=outer membrane N-deacetylase;pseudo=true;transl_except=(pos:complement(1080293..1080295)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 1081007 1081783 . + . ID=id158;gbkey=repeat_region;gene=pgaB NC_008258.1 RefSeq region 1081012 1081779 . - . ID=id159;gbkey=mobile_element NC_008258.1 RefSeq gene 1081027 1081530 . - . ID=gene1140;Name=SFV_RS05715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05715;old_locus_tag=SFV_1034 NC_008258.1 Protein Homology CDS 1081027 1081530 . - 0 ID=cds1116;Parent=gene1140;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 1081694 1082562 . - . ID=gene1141;Name=SFV_RS05720;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05720;partial=true;pseudo=true;start_range=.,1081694 NC_008258.1 Protein Homology CDS 1081694 1082562 . - 0 ID=cds1117;Parent=gene1141;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1081694;transl_table=11 NC_008258.1 RefSeq gene 1082571 1084994 . - . ID=gene1142;Name=pgaA;gbkey=Gene;gene=pgaA;gene_biotype=pseudogene;gene_synonym=hmsH,ycdS;locus_tag=SFV_RS05725;pseudo=true NC_008258.1 Protein Homology CDS 1082571 1084994 . - 0 ID=cds1118;Parent=gene1142;Note=outer membrane protein essential for the synthesis of poly-beta-1%2C6-N-acetyl-D-glucosamine (PGA)%3B adhesin required for biofilm formation%3B PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface%3B member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia;gbkey=CDS;gene=pgaA;product=poly-beta-1%2C6-N-acetyl-D-glucosamine export protein;pseudo=true;transl_except=(pos:complement(1084053..1084055)%2Caa:Other),(pos:complement(1083795..1083797)%2Caa:Other),(pos:complement(1083564..1083566)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1085581 1086932 . + . ID=gene1143;Name=SFV_RS05730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05730;pseudo=true NC_008258.1 Protein Homology CDS 1085581 1086932 . + 0 ID=cds1119;Parent=gene1143;exception=annotated by transcript or proteomic data;gbkey=CDS;product=diguanylate cyclase;pseudo=true;transl_except=(pos:1086558..1086560%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1087126 1088642 . + . ID=gene1144;Name=SFV_RS05735;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05735;old_locus_tag=SFV_1038;pseudo=true NC_008258.1 Protein Homology CDS 1087126 1088642 . + 0 ID=cds1120;Parent=gene1144;exception=annotated by transcript or proteomic data;gbkey=CDS;product=diguanylate phosphodiesterase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1088860 1090119 . + . ID=id160;gbkey=repeat_region NC_008258.1 RefSeq region 1088862 1090119 . - . ID=id161;gbkey=mobile_element NC_008258.1 RefSeq gene 1088892 1089758 . - . ID=gene1145;Name=SFV_RS05740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05740;old_locus_tag=SFV_1039 NC_008258.1 Protein Homology CDS 1088892 1089758 . - 0 ID=cds1121;Parent=gene1145;Dbxref=Genbank:WP_000878219.1;Name=WP_000878219.1;gbkey=CDS;product=transposase;protein_id=WP_000878219.1;transl_table=11 NC_008258.1 RefSeq gene 1089755 1090054 . - . ID=gene1146;Name=SFV_RS05745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05745;old_locus_tag=SFV_1040 NC_008258.1 Protein Homology CDS 1089755 1090054 . - 0 ID=cds1122;Parent=gene1146;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NC_008258.1 RefSeq gene 1090325 1090649 . + . ID=gene1147;Name=SFV_RS05750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05750;pseudo=true NC_008258.1 Protein Homology CDS 1090325 1090649 . + 0 ID=cds1123;Parent=gene1147;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1090646 1091632 . + . ID=gene1148;Name=SFV_RS05755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05755;old_locus_tag=SFV_1042 NC_008258.1 Protein Homology CDS 1090646 1091632 . + 0 ID=cds1124;Parent=gene1148;Dbxref=Genbank:WP_000611853.1;Name=WP_000611853.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000611853.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1091782 1091919 . + . ID=id162;gbkey=repeat_region NC_008258.1 RefSeq gene 1091825 1091912 . - . ID=gene1149;Name=SFV_RS05760;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS05760;old_locus_tag=SFV_1043 NC_008258.1 tRNAscan-SE tRNA 1091825 1091912 . - . ID=rna24;Parent=gene1149;anticodon=(pos:complement(1091876..1091878));gbkey=tRNA;product=tRNA-Ser NC_008258.1 tRNAscan-SE exon 1091825 1091912 . - . ID=id163;Parent=rna24;anticodon=(pos:complement(1091876..1091878));gbkey=tRNA;product=tRNA-Ser NC_008258.1 RefSeq gene 1092147 1093085 . + . ID=gene1150;Name=ghrA;gbkey=Gene;gene=ghrA;gene_biotype=pseudogene;locus_tag=SFV_RS05765;pseudo=true NC_008258.1 Protein Homology CDS 1092147 1093085 . + 0 ID=cds1125;Parent=gene1150;Note=catalyzes the formation of glycolate and glycerate from glyoxylate and hydroxypyruvate%2C respectively;gbkey=CDS;gene=ghrA;product=bifunctional glyoxylate/hydroxypyruvate reductase A;pseudo=true;transl_except=(pos:1092618..1092620%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1093140 1093877 . + . ID=gene1151;Name=SFV_RS05770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05770;old_locus_tag=SFV_1045 NC_008258.1 Protein Homology CDS 1093140 1093877 . + 0 ID=cds1126;Parent=gene1151;Dbxref=Genbank:WP_000283673.1;Name=WP_000283673.1;gbkey=CDS;product=phosphatase;protein_id=WP_000283673.1;transl_table=11 NC_008258.1 RefSeq gene 1093901 1094455 . + . ID=gene1152;Name=SFV_RS05775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05775;old_locus_tag=SFV_1046 NC_008258.1 Protein Homology CDS 1093901 1094455 . + 0 ID=cds1127;Parent=gene1152;Dbxref=Genbank:WP_001001917.1;Name=WP_001001917.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_001001917.1;transl_table=11 NC_008258.1 RefSeq gene 1094557 1095048 . + . ID=gene1153;Name=SFV_RS05780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05780;old_locus_tag=SFV_1047 NC_008258.1 Protein Homology CDS 1094557 1095048 . + 0 ID=cds1128;Parent=gene1153;Dbxref=Genbank:WP_044023817.1;Name=WP_044023817.1;gbkey=CDS;product=membrane protein;protein_id=WP_044023817.1;transl_table=11 NC_008258.1 RefSeq gene 1095181 1095887 . - . ID=gene1154;Name=SFV_RS05785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05785;pseudo=true NC_008258.1 Protein Homology CDS 1095181 1095887 . - 0 ID=cds1129;Parent=gene1154;Note=involved in the stability of the curlin proteins during assembly%3B involved in the secretion of the major curlin subunit CsgA across the outer membrane;exception=annotated by transcript or proteomic data;gbkey=CDS;product=curli production assembly/transport protein CsgG;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1095914 1096330 . - . ID=gene1155;Name=SFV_RS05790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05790;old_locus_tag=SFV_1049 NC_008258.1 Protein Homology CDS 1095914 1096330 . - 0 ID=cds1130;Parent=gene1155;Dbxref=Genbank:WP_001264088.1;Name=WP_001264088.1;Note=nucleator protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation)%3B part of the curli secretion and assembly protein complex;gbkey=CDS;product=curli production assembly/transport component CsgF;protein_id=WP_001264088.1;transl_table=11 NC_008258.1 RefSeq gene 1096355 1096744 . - . ID=gene1156;Name=SFV_RS05795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05795;old_locus_tag=SFV_1050 NC_008258.1 Protein Homology CDS 1096355 1096744 . - 0 ID=cds1131;Parent=gene1156;Dbxref=Genbank:WP_000833291.1;Name=WP_000833291.1;Note=chaperone-like protein that participates in the polymerization of curlin (CsgA) subunits into curli (extracellular fibers from Escherichia and Salmonella spp. that are involved in the colonization of inert surfaces and biofilm formation)%3B part of the curli secretion and assembly protein complex;gbkey=CDS;product=curli assembly protein CsgE;protein_id=WP_000833291.1;transl_table=11 NC_008258.1 RefSeq gene 1096749 1097399 . - . ID=gene1157;Name=SFV_RS05800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05800;old_locus_tag=SFV_1051 NC_008258.1 Protein Homology CDS 1096749 1097399 . - 0 ID=cds1132;Parent=gene1157;Dbxref=Genbank:WP_000481500.1;Name=WP_000481500.1;Note=activates the csgBA and csgDEFG operons involved in biofilm formation;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000481500.1;transl_table=11 NC_008258.1 RefSeq gene 1097811 1098050 . - . ID=gene1158;Name=SFV_RS05805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05805 NC_008258.1 Protein Homology CDS 1097811 1098050 . - 0 ID=cds1133;Parent=gene1158;Dbxref=Genbank:WP_044023818.1;Name=WP_044023818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044023818.1;transl_table=11 NC_008258.1 RefSeq gene 1098153 1098608 . + . ID=gene1159;Name=csgB;gbkey=Gene;gene=csgB;gene_biotype=protein_coding;locus_tag=SFV_RS05810;old_locus_tag=SFV_1052 NC_008258.1 Protein Homology CDS 1098153 1098608 . + 0 ID=cds1134;Parent=gene1159;Dbxref=Genbank:WP_011587207.1;Name=WP_011587207.1;Note=CsgB%3B functions as a nucleator in the assembly of curli (coiled surface structures) on the cell surface;gbkey=CDS;gene=csgB;product=curlin;protein_id=WP_011587207.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1098754 1099904 . + . ID=id164;gbkey=repeat_region NC_008258.1 RefSeq region 1098758 1099808 . + . ID=id165;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1098822 1099124 . + . ID=gene1160;Name=SFV_RS05815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05815;old_locus_tag=SFV_1054 NC_008258.1 Protein Homology CDS 1098822 1099124 . + 0 ID=cds1135;Parent=gene1160;Dbxref=Genbank:WP_000088261.1;Name=WP_000088261.1;gbkey=CDS;product=transposase;protein_id=WP_000088261.1;transl_table=11 NC_008258.1 RefSeq gene 1099265 1099903 . + . ID=gene1161;Name=SFV_RS05820;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05820;old_locus_tag=SFV_1055;pseudo=true NC_008258.1 Protein Homology CDS 1099265 1099903 . + 0 ID=cds1136;Parent=gene1161;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1099884 1100249 . + . ID=gene1162;Name=csgA;gbkey=Gene;gene=csgA;gene_biotype=protein_coding;locus_tag=SFV_RS05825 NC_008258.1 Protein Homology CDS 1099884 1100249 . + 0 ID=cds1137;Parent=gene1162;Dbxref=Genbank:WP_001144017.1;Name=WP_001144017.1;Note=the major structural subunit of curlin which assemble to form curli which can bind to fibronectin;gbkey=CDS;gene=csgA;product=major curlin subunit;protein_id=WP_001144017.1;transl_table=11 NC_008258.1 RefSeq gene 1100308 1100640 . + . ID=gene1163;Name=csgC;gbkey=Gene;gene=csgC;gene_biotype=protein_coding;locus_tag=SFV_RS05830 NC_008258.1 Protein Homology CDS 1100308 1100640 . + 0 ID=cds1138;Parent=gene1163;Dbxref=Genbank:WP_000992821.1;Name=WP_000992821.1;Note=involved in autoagglutination of curliated cells%3B not involved in production of curli fibers;gbkey=CDS;gene=csgC;product=curli assembly protein CsgC;protein_id=WP_000992821.1;transl_table=11 NC_008258.1 RefSeq gene 1100761 1101072 . + . ID=gene1164;Name=SFV_RS05835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05835;old_locus_tag=SFV_1056 NC_008258.1 Protein Homology CDS 1100761 1101072 . + 0 ID=cds1139;Parent=gene1164;Dbxref=Genbank:WP_000489563.1;Name=WP_000489563.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000489563.1;transl_table=11 NC_008258.1 RefSeq gene 1101167 1101700 . + . ID=gene1165;Name=SFV_RS05840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05840;old_locus_tag=SFV_1057 NC_008258.1 Protein Homology CDS 1101167 1101700 . + 0 ID=cds1140;Parent=gene1165;Dbxref=Genbank:WP_000857408.1;Name=WP_000857408.1;Note=interacts and inactivates RNase III during cold shock;gbkey=CDS;product=O-acetyl-ADP-ribose deacetylase;protein_id=WP_000857408.1;transl_table=11 NC_008258.1 RefSeq gene 1101702 1103119 . + . ID=gene1166;Name=SFV_RS05845;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05845;pseudo=true NC_008258.1 Protein Homology CDS 1101702 1103119 . + 0 ID=cds1141;Parent=gene1166;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1103127 1104284 . - . ID=gene1167;Name=opgC;gbkey=Gene;gene=opgC;gene_biotype=protein_coding;gene_synonym=mdoC;locus_tag=SFV_RS05850;old_locus_tag=SFV_1059 NC_008258.1 Protein Homology CDS 1103127 1104284 . - 0 ID=cds1142;Parent=gene1167;Dbxref=Genbank:WP_001070350.1;Name=WP_001070350.1;Note=required for the transfer of succinyl residues to osmoregulated periplasmic glucans;gbkey=CDS;gene=opgC;product=glucan biosynthesis protein C;protein_id=WP_001070350.1;transl_table=11 NC_008258.1 RefSeq gene 1104329 1104472 . - . ID=gene1168;Name=SFV_RS05855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05855 NC_008258.1 Protein Homology CDS 1104329 1104472 . - 0 ID=cds1143;Parent=gene1168;Dbxref=Genbank:WP_001111218.1;Name=WP_001111218.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001111218.1;transl_table=11 NC_008258.1 RefSeq gene 1104476 1104607 . - . ID=gene1169;Name=SFV_RS05860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05860 NC_008258.1 Protein Homology CDS 1104476 1104607 . - 0 ID=cds1144;Parent=gene1169;Dbxref=Genbank:WP_005047366.1;Name=WP_005047366.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005047366.1;transl_table=11 NC_008258.1 RefSeq gene 1104660 1106213 . + . ID=gene1170;Name=mdoG;gbkey=Gene;gene=mdoG;gene_biotype=protein_coding;gene_synonym=opgG;locus_tag=SFV_RS05865;old_locus_tag=SFV_1060 NC_008258.1 Protein Homology CDS 1104660 1106213 . + 0 ID=cds1145;Parent=gene1170;Dbxref=Genbank:WP_000681061.1;Name=WP_000681061.1;Note=involved in the biosynthesis of osmoregulated periplasmic glucans%3B required for the assembly of the polyglucose structure of glucan;gbkey=CDS;gene=mdoG;product=glucan biosynthesis protein G;protein_id=WP_000681061.1;transl_table=11 NC_008258.1 RefSeq gene 1106236 1108749 . + . ID=gene1171;Name=SFV_RS05870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05870;old_locus_tag=SFV_1061 NC_008258.1 Protein Homology CDS 1106236 1108749 . + 0 ID=cds1146;Parent=gene1171;Dbxref=Genbank:WP_001299041.1;Name=WP_001299041.1;Note=necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space;gbkey=CDS;product=glucosyltransferase;protein_id=WP_001299041.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1108977 1110808 . + . ID=id166;gbkey=repeat_region NC_008258.1 RefSeq region 1108977 1110805 . - . ID=id167;gbkey=mobile_element NC_008258.1 RefSeq gene 1109165 1110352 . - . ID=gene1172;Name=SFV_RS05875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05875;old_locus_tag=SFV_1062 NC_008258.1 Protein Homology CDS 1109165 1110352 . - 0 ID=cds1147;Parent=gene1172;Dbxref=Genbank:WP_000937551.1;Name=WP_000937551.1;gbkey=CDS;product=transposase;protein_id=WP_000937551.1;transl_table=11 NC_008258.1 RefSeq gene 1110352 1110717 . - . ID=gene1173;Name=SFV_RS05880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05880;old_locus_tag=SFV_1063 NC_008258.1 Protein Homology CDS 1110352 1110717 . - 0 ID=cds1148;Parent=gene1173;Dbxref=Genbank:WP_000124132.1;Name=WP_000124132.1;gbkey=CDS;product=transposase;protein_id=WP_000124132.1;transl_table=11 NC_008258.1 RefSeq gene 1110742 1112376 . + . ID=gene1174;Name=SFV_RS05885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05885;old_locus_tag=SFV_1064 NC_008258.1 Protein Homology CDS 1110742 1112376 . + 0 ID=cds1149;Parent=gene1174;Dbxref=Genbank:WP_005105249.1;Name=WP_005105249.1;gbkey=CDS;product=phage tail tape measure protein;protein_id=WP_005105249.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1112431 1113744 . + . ID=id168;gbkey=repeat_region NC_008258.1 RefSeq region 1112438 1113743 . - . ID=id169;gbkey=mobile_element NC_008258.1 RefSeq gene 1112480 1112998 . - . ID=gene1175;Name=SFV_RS05890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05890 NC_008258.1 Protein Homology CDS 1112480 1112998 . - 0 ID=cds1150;Parent=gene1175;Dbxref=Genbank:WP_024260258.1;Name=WP_024260258.1;gbkey=CDS;product=transposase;protein_id=WP_024260258.1;transl_table=11 NC_008258.1 RefSeq gene 1113010 1113363 . - . ID=gene1176;Name=SFV_RS05895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05895 NC_008258.1 Protein Homology CDS 1113010 1113363 . - 0 ID=cds1151;Parent=gene1176;Dbxref=Genbank:WP_001128914.1;Name=WP_001128914.1;gbkey=CDS;product=transposase;protein_id=WP_001128914.1;transl_table=11 NC_008258.1 RefSeq gene 1113363 1113689 . - . ID=gene1177;Name=SFV_RS05900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05900;old_locus_tag=SFV_1066 NC_008258.1 Protein Homology CDS 1113363 1113689 . - 0 ID=cds1152;Parent=gene1177;Dbxref=Genbank:WP_000165261.1;Name=WP_000165261.1;gbkey=CDS;product=transposase;protein_id=WP_000165261.1;transl_table=11 NC_008258.1 RefSeq gene 1113806 1114051 . + . ID=gene1178;Name=SFV_RS05905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05905 NC_008258.1 GeneMarkS+ CDS 1113806 1114051 . + 0 ID=cds1153;Parent=gene1178;Dbxref=Genbank:WP_000818777.1;Name=WP_000818777.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000818777.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1114048 1115300 . + . ID=id170;gbkey=repeat_region NC_008258.1 RefSeq region 1114049 1115298 . + . ID=id171;gbkey=mobile_element NC_008258.1 RefSeq gene 1114121 1114423 . + . ID=gene1179;Name=SFV_RS05910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05910;old_locus_tag=SFV_1067 NC_008258.1 Protein Homology CDS 1114121 1114423 . + 0 ID=cds1154;Parent=gene1179;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 1114612 1115290 . + . ID=gene1180;Name=SFV_RS05915;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05915;old_locus_tag=SFV_1068;pseudo=true NC_008258.1 Protein Homology CDS 1114612 1115290 . + 0 ID=cds1155;Parent=gene1180;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1115299 1115795 . - . ID=gene1181;Name=SFV_RS05920;end_range=1115795,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS05920;partial=true;pseudo=true;start_range=.,1115299 NC_008258.1 Protein Homology CDS 1115299 1115795 . - 0 ID=cds1156;Parent=gene1181;end_range=1115795,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1115299;transl_table=11 NC_008258.1 RefSeq repeat_region 1115770 1117102 . + . ID=id172;gbkey=repeat_region NC_008258.1 RefSeq region 1115772 1117102 . + . ID=id173;gbkey=mobile_element NC_008258.1 RefSeq gene 1115863 1116228 . + . ID=gene1182;Name=SFV_RS05925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05925;old_locus_tag=SFV_1069 NC_008258.1 Protein Homology CDS 1115863 1116228 . + 0 ID=cds1157;Parent=gene1182;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1116186 1117091 . + . ID=gene1183;Name=SFV_RS05930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05930;old_locus_tag=SFV_1070 NC_008258.1 Protein Homology CDS 1116186 1117091 . + 0 ID=cds1158;Parent=gene1183;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1117433 1118744 . + . ID=id174;gbkey=repeat_region NC_008258.1 RefSeq region 1117433 1118737 . + . ID=id175;gbkey=mobile_element NC_008258.1 RefSeq gene 1117487 1117813 . + . ID=gene1184;Name=SFV_RS05935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05935;old_locus_tag=SFV_1071 NC_008258.1 Protein Homology CDS 1117487 1117813 . + 0 ID=cds1159;Parent=gene1184;Dbxref=Genbank:WP_000165274.1;Name=WP_000165274.1;gbkey=CDS;product=transposase;protein_id=WP_000165274.1;transl_table=11 NC_008258.1 RefSeq gene 1117813 1118166 . + . ID=gene1185;Name=SFV_RS05940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05940 NC_008258.1 Protein Homology CDS 1117813 1118166 . + 0 ID=cds1160;Parent=gene1185;Dbxref=Genbank:WP_001128914.1;Name=WP_001128914.1;gbkey=CDS;product=transposase;protein_id=WP_001128914.1;transl_table=11 NC_008258.1 RefSeq gene 1118309 1118695 . + . ID=gene1186;Name=SFV_RS05945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05945;old_locus_tag=SFV_1073 NC_008258.1 Protein Homology CDS 1118309 1118695 . + 0 ID=cds1161;Parent=gene1186;Dbxref=Genbank:WP_005105252.1;Name=WP_005105252.1;gbkey=CDS;product=transposase;protein_id=WP_005105252.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1118917 1120184 . + . ID=id176;gbkey=repeat_region NC_008258.1 RefSeq region 1118919 1120182 . + . ID=id177;gbkey=mobile_element NC_008258.1 RefSeq gene 1118983 1119285 . + . ID=gene1187;Name=SFV_RS05950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05950;old_locus_tag=SFV_1074 NC_008258.1 Protein Homology CDS 1118983 1119285 . + 0 ID=cds1162;Parent=gene1187;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 1119426 1120139 . + . ID=gene1188;Name=SFV_RS05955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05955;old_locus_tag=SFV_1075 NC_008258.1 Protein Homology CDS 1119426 1120139 . + 0 ID=cds1163;Parent=gene1188;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1120164 1121096 . - . ID=gene1189;Name=SFV_RS05960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05960;old_locus_tag=SFV_1076 NC_008258.1 Protein Homology CDS 1120164 1121096 . - 0 ID=cds1164;Parent=gene1189;Dbxref=Genbank:WP_001250417.1;Name=WP_001250417.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001250417.1;transl_table=11 NC_008258.1 RefSeq gene 1121120 1121317 . - . ID=gene1190;Name=SFV_RS05965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05965 NC_008258.1 Protein Homology CDS 1121120 1121317 . - 0 ID=cds1165;Parent=gene1190;Dbxref=Genbank:WP_000074158.1;Name=WP_000074158.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_000074158.1;transl_table=11 NC_008258.1 RefSeq gene 1121489 1122409 . - . ID=gene1191;Name=SFV_RS05970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05970;old_locus_tag=SFV_1077 NC_008258.1 Protein Homology CDS 1121489 1122409 . - 0 ID=cds1166;Parent=gene1191;Dbxref=Genbank:WP_005062003.1;Name=WP_005062003.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA;gbkey=CDS;product=lipid A biosynthesis lauroyl acyltransferase;protein_id=WP_005062003.1;transl_table=11 NC_008258.1 RefSeq gene 1122634 1123686 . + . ID=gene1192;Name=SFV_RS05975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05975;old_locus_tag=SFV_1078 NC_008258.1 Protein Homology CDS 1122634 1123686 . + 0 ID=cds1167;Parent=gene1192;Dbxref=Genbank:WP_001144616.1;Name=WP_001144616.1;gbkey=CDS;product=sulfurtransferase;protein_id=WP_001144616.1;transl_table=11 NC_008258.1 RefSeq gene 1123728 1124303 . - . ID=gene1193;Name=SFV_RS05980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05980;old_locus_tag=SFV_1079 NC_008258.1 Protein Homology CDS 1123728 1124303 . - 0 ID=cds1168;Parent=gene1193;Dbxref=Genbank:WP_000749269.1;Name=WP_000749269.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000749269.1;transl_table=11 NC_008258.1 RefSeq gene 1124307 1124873 . - . ID=gene1194;Name=SFV_RS05985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05985;old_locus_tag=SFV_1080 NC_008258.1 Protein Homology CDS 1124307 1124873 . - 0 ID=cds1169;Parent=gene1194;Dbxref=Genbank:WP_000011108.1;Name=WP_000011108.1;gbkey=CDS;product=cytochrome B561;protein_id=WP_000011108.1;transl_table=11 NC_008258.1 RefSeq gene 1125134 1125247 . - . ID=gene1195;Name=SFV_RS05990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS05990;old_locus_tag=SFV_1081 NC_008258.1 Protein Homology CDS 1125134 1125247 . - 0 ID=cds1170;Parent=gene1195;Dbxref=Genbank:WP_001253418.1;Name=WP_001253418.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001253418.1;transl_table=11 NC_008258.1 RefSeq gene 1125295 1126413 . - . ID=gene1196;Name=solA;gbkey=Gene;gene=solA;gene_biotype=protein_coding;locus_tag=SFV_RS05995;old_locus_tag=SFV_1082 NC_008258.1 Protein Homology CDS 1125295 1126413 . - 0 ID=cds1171;Parent=gene1196;Dbxref=Genbank:WP_000872813.1;Name=WP_000872813.1;Note=catalyzes the demethylation of N-methyl-L-tryptophan forming L-tryptophan and formaldehyde%3B FAD-binding%3B can also catalyze the demethylation of other N-methyl amino acids;gbkey=CDS;gene=solA;product=N-methyl-L-tryptophan oxidase;protein_id=WP_000872813.1;transl_table=11 NC_008258.1 RefSeq gene 1126528 1126782 . - . ID=gene1197;Name=bssS;gbkey=Gene;gene=bssS;gene_biotype=pseudogene;gene_synonym=yceP;locus_tag=SFV_RS06000;pseudo=true NC_008258.1 Protein Homology CDS 1126528 1126782 . - 0 ID=cds1172;Parent=gene1197;Note=BssS%3B regulator of biofilm through signal secretion%3B disruption of this gene in Escherichia coli led to effects on biofilm formation%2C alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing;gbkey=CDS;gene=bssS;product=transcriptional regulator;pseudo=true;transl_except=(pos:complement(1126669..1126671)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1127072 1127317 . - . ID=gene1198;Name=SFV_RS06005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06005;old_locus_tag=SFV_1083 NC_008258.1 Protein Homology CDS 1127072 1127317 . - 0 ID=cds1173;Parent=gene1198;Dbxref=Genbank:WP_001217754.1;Name=WP_001217754.1;gbkey=CDS;product=DNA-damage-inducible protein I;protein_id=WP_001217754.1;transl_table=11 NC_008258.1 RefSeq gene 1127391 1128437 . - . ID=gene1199;Name=SFV_RS06010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06010;old_locus_tag=SFV_1084 NC_008258.1 Protein Homology CDS 1127391 1128437 . - 0 ID=cds1174;Parent=gene1199;Dbxref=Genbank:WP_000126531.1;Name=WP_000126531.1;gbkey=CDS;product=dihydroorotase;protein_id=WP_000126531.1;transl_table=11 NC_008258.1 RefSeq gene 1128543 1129103 . - . ID=gene1200;Name=SFV_RS06015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06015;old_locus_tag=SFV_1085 NC_008258.1 Protein Homology CDS 1128543 1129103 . - 0 ID=cds1175;Parent=gene1200;Dbxref=Genbank:WP_001295443.1;Name=WP_001295443.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001295443.1;transl_table=11 NC_008258.1 RefSeq gene 1129237 1129884 . - . ID=gene1201;Name=SFV_RS06020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06020;old_locus_tag=SFV_1086 NC_008258.1 Protein Homology CDS 1129237 1129884 . - 0 ID=cds1176;Parent=gene1201;Dbxref=Genbank:WP_000780921.1;Name=WP_000780921.1;Note=cofactor involved in the reduction of disulfides;gbkey=CDS;product=glutaredoxin;protein_id=WP_000780921.1;transl_table=11 NC_008258.1 RefSeq gene 1129948 1131156 . - . ID=gene1202;Name=SFV_RS06025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06025;old_locus_tag=SFV_1087 NC_008258.1 Protein Homology CDS 1129948 1131156 . - 0 ID=cds1177;Parent=gene1202;Dbxref=Genbank:WP_000092220.1;Name=WP_000092220.1;Note=Confers resistance to norfloxacin and enoxacin;gbkey=CDS;product=multidrug resistance protein MdtH;protein_id=WP_000092220.1;transl_table=11 NC_008258.1 RefSeq gene 1131392 1131976 . + . ID=gene1203;Name=SFV_RS06030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06030;old_locus_tag=SFV_1088 NC_008258.1 Protein Homology CDS 1131392 1131976 . + 0 ID=cds1178;Parent=gene1203;Dbxref=Genbank:WP_000468186.1;Name=WP_000468186.1;gbkey=CDS;product=ribosomal-protein-alanine acetyltransferase;protein_id=WP_000468186.1;transl_table=11 NC_008258.1 RefSeq gene 1131987 1132634 . + . ID=gene1204;Name=SFV_RS06035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06035;old_locus_tag=SFV_1089 NC_008258.1 Protein Homology CDS 1131987 1132634 . + 0 ID=cds1179;Parent=gene1204;Dbxref=Genbank:WP_000877111.1;Name=WP_000877111.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000877111.1;transl_table=11 NC_008258.1 RefSeq gene 1132636 1133502 . + . ID=gene1205;Name=SFV_RS06040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06040;old_locus_tag=SFV_1090 NC_008258.1 Protein Homology CDS 1132636 1133502 . + 0 ID=cds1180;Parent=gene1205;Dbxref=Genbank:WP_000736138.1;Name=WP_000736138.1;gbkey=CDS;product=virulence factor MviM;protein_id=WP_000736138.1;transl_table=11 NC_008258.1 RefSeq gene 1133669 1135204 . + . ID=gene1206;Name=SFV_RS06045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06045;old_locus_tag=SFV_1091 NC_008258.1 Protein Homology CDS 1133669 1135204 . + 0 ID=cds1181;Parent=gene1206;Dbxref=Genbank:WP_001050672.1;Name=WP_001050672.1;gbkey=CDS;product=virulence factor;protein_id=WP_001050672.1;transl_table=11 NC_008258.1 RefSeq gene 1135244 1135660 . - . ID=gene1207;Name=SFV_RS06050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06050;old_locus_tag=SFV_1092 NC_008258.1 Protein Homology CDS 1135244 1135660 . - 0 ID=cds1182;Parent=gene1207;Dbxref=Genbank:WP_000197338.1;Name=WP_000197338.1;Note=export chaperone for FlgK and FlgL;gbkey=CDS;product=flagella synthesis chaperone protein FlgN;protein_id=WP_000197338.1;transl_table=11 NC_008258.1 RefSeq gene 1135665 1135958 . - . ID=gene1208;Name=SFV_RS06055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06055;old_locus_tag=SFV_1093 NC_008258.1 Protein Homology CDS 1135665 1135958 . - 0 ID=cds1183;Parent=gene1208;Dbxref=Genbank:WP_000020880.1;Name=WP_000020880.1;Note=regulates the flagellar specific sigma28 transcription factor;gbkey=CDS;product=negative regulator of flagellin synthesis;protein_id=WP_000020880.1;transl_table=11 NC_008258.1 RefSeq gene 1136034 1136693 . - . ID=gene1209;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=SFV_RS06060;old_locus_tag=SFV_1094 NC_008258.1 Protein Homology CDS 1136034 1136693 . - 0 ID=cds1184;Parent=gene1209;Dbxref=Genbank:WP_000955724.1;Name=WP_000955724.1;Note=required for the assembly of the flagellar basal body P-ring;gbkey=CDS;gene=flgA;product=flagellar basal body P-ring biosynthesis protein FlgA;protein_id=WP_000955724.1;transl_table=11 NC_008258.1 RefSeq gene 1136848 1137264 . + . ID=gene1210;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=SFV_RS06065;old_locus_tag=SFV_1095 NC_008258.1 Protein Homology CDS 1136848 1137264 . + 0 ID=cds1185;Parent=gene1210;Dbxref=Genbank:WP_000884702.1;Name=WP_000884702.1;Note=with FlgF and C makes up the proximal portion of the flagellar basal body rod%3B Vibrio parahaemolyticus protein is associated with the polar flagella;gbkey=CDS;gene=flgB;product=flagellar biosynthesis protein FlgB;protein_id=WP_000884702.1;transl_table=11 NC_008258.1 RefSeq gene 1137268 1137671 . + . ID=gene1211;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=pseudogene;locus_tag=SFV_RS06070;pseudo=true NC_008258.1 Protein Homology CDS 1137268 1137671 . + 0 ID=cds1186;Parent=gene1211;Note=with FlgF and B makes up the proximal portion of the flagellar basal body rod;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=flgC;product=flagellar biosynthesis protein FlgC;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1137683 1138378 . + . ID=gene1212;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=SFV_RS06075;old_locus_tag=SFV_1097 NC_008258.1 Protein Homology CDS 1137683 1138378 . + 0 ID=cds1187;Parent=gene1212;Dbxref=Genbank:WP_000020486.1;Name=WP_000020486.1;Note=acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of some flagellar genes%3B in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production;gbkey=CDS;gene=flgD;product=flagellar basal body rod modification protein FlgD;protein_id=WP_000020486.1;transl_table=11 NC_008258.1 RefSeq gene 1138403 1139611 . + . ID=gene1213;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=SFV_RS06080;old_locus_tag=SFV_1098 NC_008258.1 Protein Homology CDS 1138403 1139611 . + 0 ID=cds1188;Parent=gene1213;Dbxref=Genbank:WP_000885833.1;Name=WP_000885833.1;Note=the hook connects flagellar basal body to the flagellar filament;gbkey=CDS;gene=flgE;product=flagellar hook protein FlgE;protein_id=WP_000885833.1;transl_table=11 NC_008258.1 RefSeq gene 1139631 1140386 . + . ID=gene1214;Name=flgF;gbkey=Gene;gene=flgF;gene_biotype=protein_coding;locus_tag=SFV_RS06085;old_locus_tag=SFV_1099 NC_008258.1 Protein Homology CDS 1139631 1140386 . + 0 ID=cds1189;Parent=gene1214;Dbxref=Genbank:WP_000349316.1;Name=WP_000349316.1;Note=FlgF%2C with FlgB and C%2C makes up the proximal portion of the flagellar basal body rod;gbkey=CDS;gene=flgF;product=flagellar basal-body rod protein FlgF;protein_id=WP_000349316.1;transl_table=11 NC_008258.1 RefSeq gene 1140524 1141306 . + . ID=gene1215;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=SFV_RS06090;old_locus_tag=SFV_1100 NC_008258.1 Protein Homology CDS 1140524 1141306 . + 0 ID=cds1190;Parent=gene1215;Dbxref=Genbank:WP_000625837.1;Name=WP_000625837.1;Note=makes up the distal portion of the flagellar basal body rod;gbkey=CDS;gene=flgG;product=flagellar basal body rod protein FlgG;protein_id=WP_000625837.1;transl_table=11 NC_008258.1 RefSeq gene 1141359 1142057 . + . ID=gene1216;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=SFV_RS06095;old_locus_tag=SFV_1101 NC_008258.1 Protein Homology CDS 1141359 1142057 . + 0 ID=cds1191;Parent=gene1216;Dbxref=Genbank:WP_001295442.1;Name=WP_001295442.1;Note=part of the flagellar basal body which consists of four rings L%2CP%2C S and M mounted on a central rod;gbkey=CDS;gene=flgH;product=flagellar L-ring protein;protein_id=WP_001295442.1;transl_table=11 NC_008258.1 RefSeq gene 1142069 1143166 . + . ID=gene1217;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=SFV_RS06100;old_locus_tag=SFV_1102 NC_008258.1 Protein Homology CDS 1142069 1143166 . + 0 ID=cds1192;Parent=gene1217;Dbxref=Genbank:WP_000589309.1;Name=WP_000589309.1;Note=part of the basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod%3B Vibrio parahaemolyticus%2C Yersinia%2C Bradyrhizobium and other bacteria have two copies of this and other flagellar genes%3B the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum;gbkey=CDS;gene=flgI;product=flagellar P-ring protein;protein_id=WP_000589309.1;transl_table=11 NC_008258.1 RefSeq gene 1143166 1144107 . + . ID=gene1218;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=SFV_RS06105;old_locus_tag=SFV_1103 NC_008258.1 Protein Homology CDS 1143166 1144107 . + 0 ID=cds1193;Parent=gene1218;Dbxref=Genbank:WP_005048129.1;Name=WP_005048129.1;Note=Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space;gbkey=CDS;gene=flgJ;product=flagellar rod assembly protein FlgJ;protein_id=WP_005048129.1;transl_table=11 NC_008258.1 RefSeq gene 1144173 1145815 . + . ID=gene1219;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=pseudogene;locus_tag=SFV_RS06110;pseudo=true NC_008258.1 Protein Homology CDS 1144173 1145815 . + 0 ID=cds1194;Parent=gene1219;Note=with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=flgK;product=flagellar biosynthesis protein FlgK;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1145827 1146780 . + . ID=gene1220;Name=flgL;gbkey=Gene;gene=flgL;gene_biotype=protein_coding;locus_tag=SFV_RS06115;old_locus_tag=SFV_1105 NC_008258.1 Protein Homology CDS 1145827 1146780 . + 0 ID=cds1195;Parent=gene1220;Dbxref=Genbank:WP_001212771.1;Name=WP_001212771.1;Note=with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook%3B Yersinia%2C Vibrio parahaemolyticus%2C Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes;gbkey=CDS;gene=flgL;product=flagellar hook-associated protein FlgL;protein_id=WP_001212771.1;transl_table=11 NC_008258.1 RefSeq gene 1146976 1150161 . - . ID=gene1221;Name=rne;gbkey=Gene;gene=rne;gene_biotype=protein_coding;locus_tag=SFV_RS06120;old_locus_tag=SFV_1106 NC_008258.1 Protein Homology CDS 1146976 1150161 . - 0 ID=cds1196;Parent=gene1221;Dbxref=Genbank:WP_000827422.1;Name=WP_000827422.1;Note=bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein%3B forms part of the membrane-associated degradosome complex along with PNPase%2C RhlB%2C and enolase;gbkey=CDS;gene=rne;product=ribonuclease E;protein_id=WP_000827422.1;transl_table=11 NC_008258.1 RefSeq gene 1150296 1150616 . + . ID=gene1222;Name=SFV_RS06125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06125 NC_008258.1 Protein Homology CDS 1150296 1150616 . + 0 ID=cds1197;Parent=gene1222;Dbxref=Genbank:WP_001295962.1;Name=WP_001295962.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295962.1;transl_table=11 NC_008258.1 RefSeq gene 1150734 1151693 . + . ID=gene1223;Name=SFV_RS06130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06130;old_locus_tag=SFV_1107 NC_008258.1 Protein Homology CDS 1150734 1151693 . + 0 ID=cds1198;Parent=gene1223;Dbxref=Genbank:WP_000846351.1;Name=WP_000846351.1;Note=catalyzes the transformation of uracil to pseudouracil at nucleotides U955%2C U2504%2C and U2580 in 23S rRNA;gbkey=CDS;product=23S rRNA pseudouridylate synthase C;protein_id=WP_000846351.1;transl_table=11 NC_008258.1 RefSeq gene 1151805 1152389 . - . ID=gene1224;Name=SFV_RS06135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06135;old_locus_tag=SFV_1108 NC_008258.1 Protein Homology CDS 1151805 1152389 . - 0 ID=cds1199;Parent=gene1224;Dbxref=Genbank:WP_001125202.1;Name=WP_001125202.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=m(7)GTP pyrophosphatase;protein_id=WP_001125202.1;transl_table=11 NC_008258.1 RefSeq gene 1152588 1153109 . + . ID=gene1225;Name=SFV_RS06140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06140;old_locus_tag=SFV_1109 NC_008258.1 Protein Homology CDS 1152588 1153109 . + 0 ID=cds1200;Parent=gene1225;Dbxref=Genbank:WP_001174482.1;Name=WP_001174482.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001174482.1;transl_table=11 NC_008258.1 RefSeq gene 1153161 1153334 . + . ID=gene1226;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=SFV_RS06145 NC_008258.1 Protein Homology CDS 1153161 1153334 . + 0 ID=cds1201;Parent=gene1226;Dbxref=Genbank:WP_000290727.1;Name=WP_000290727.1;Note=some L32 proteins have zinc finger motifs consisting of CXXC while others do not;gbkey=CDS;gene=rpmF;product=50S ribosomal protein L32;protein_id=WP_000290727.1;transl_table=11 NC_008258.1 RefSeq gene 1153445 1154485 . + . ID=gene1227;Name=SFV_RS06150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06150;old_locus_tag=SFV_1110 NC_008258.1 Protein Homology CDS 1153445 1154485 . + 0 ID=cds1202;Parent=gene1227;Dbxref=Genbank:WP_001341494.1;Name=WP_001341494.1;gbkey=CDS;product=phosphate acyltransferase;protein_id=WP_001341494.1;transl_table=11 NC_008258.1 RefSeq gene 1154553 1155506 . + . ID=gene1228;Name=SFV_RS06155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06155;old_locus_tag=SFV_1111 NC_008258.1 Protein Homology CDS 1154553 1155506 . + 0 ID=cds1203;Parent=gene1228;Dbxref=Genbank:WP_000288128.1;Name=WP_000288128.1;Note=FabH%3B beta-ketoacyl-acyl carrier protein synthase III%3B catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation%3B differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs;gbkey=CDS;product=3-oxoacyl-ACP synthase III;protein_id=WP_000288128.1;transl_table=11 NC_008258.1 RefSeq gene 1155522 1156451 . + . ID=gene1229;Name=SFV_RS06160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06160;old_locus_tag=SFV_1112 NC_008258.1 Protein Homology CDS 1155522 1156451 . + 0 ID=cds1204;Parent=gene1229;Dbxref=Genbank:WP_000191374.1;Name=WP_000191374.1;gbkey=CDS;product=malonyl CoA-ACP transacylase;protein_id=WP_000191374.1;transl_table=11 NC_008258.1 RefSeq gene 1156464 1157198 . + . ID=gene1230;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=SFV_RS06165;old_locus_tag=SFV_1113 NC_008258.1 Protein Homology CDS 1156464 1157198 . + 0 ID=cds1205;Parent=gene1230;Dbxref=Genbank:WP_001008535.1;Name=WP_001008535.1;Note=catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;gbkey=CDS;gene=fabG;product=3-oxoacyl-ACP reductase;protein_id=WP_001008535.1;transl_table=11 NC_008258.1 RefSeq gene 1157409 1157645 . + . ID=gene1231;Name=SFV_RS06170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06170;old_locus_tag=SFV_1114 NC_008258.1 Protein Homology CDS 1157409 1157645 . + 0 ID=cds1206;Parent=gene1231;Dbxref=Genbank:WP_000103754.1;Name=WP_000103754.1;Note=carries the fatty acid chain in fatty acid biosynthesis;gbkey=CDS;product=acyl carrier protein;protein_id=WP_000103754.1;transl_table=11 NC_008258.1 RefSeq gene 1157731 1158972 . + . ID=gene1232;Name=SFV_RS06175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06175;old_locus_tag=SFV_1115 NC_008258.1 Protein Homology CDS 1157731 1158972 . + 0 ID=cds1207;Parent=gene1232;Dbxref=Genbank:WP_000044679.1;Name=WP_000044679.1;Note=FabF%3B beta-ketoacyl-ACP synthase II%2C KASII%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase II;protein_id=WP_000044679.1;transl_table=11 NC_008258.1 RefSeq gene 1159092 1159901 . + . ID=gene1233;Name=SFV_RS06180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06180;old_locus_tag=SFV_1116 NC_008258.1 Protein Homology CDS 1159092 1159901 . + 0 ID=cds1208;Parent=gene1233;Dbxref=Genbank:WP_000478698.1;Name=WP_000478698.1;Note=catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate;gbkey=CDS;product=4-amino-4-deoxychorismate lyase;protein_id=WP_000478698.1;transl_table=11 NC_008258.1 RefSeq gene 1159904 1160926 . + . ID=gene1234;Name=SFV_RS06185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06185;old_locus_tag=SFV_1117 NC_008258.1 Protein Homology CDS 1159904 1160926 . + 0 ID=cds1209;Parent=gene1234;Dbxref=Genbank:WP_000756822.1;Name=WP_000756822.1;gbkey=CDS;product=aminodeoxychorismate lyase;protein_id=WP_000756822.1;transl_table=11 NC_008258.1 RefSeq gene 1160916 1161557 . + . ID=gene1235;Name=SFV_RS06190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06190;old_locus_tag=SFV_1118 NC_008258.1 Protein Homology CDS 1160916 1161557 . + 0 ID=cds1210;Parent=gene1235;Dbxref=Genbank:WP_001257000.1;Name=WP_001257000.1;gbkey=CDS;product=thymidylate kinase;protein_id=WP_001257000.1;transl_table=11 NC_008258.1 RefSeq gene 1161554 1162558 . + . ID=gene1236;Name=SFV_RS06195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06195;old_locus_tag=SFV_1119 NC_008258.1 Protein Homology CDS 1161554 1162558 . + 0 ID=cds1211;Parent=gene1236;Dbxref=Genbank:WP_001267941.1;Name=WP_001267941.1;Note=catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand%3B the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA;gbkey=CDS;product=DNA polymerase III subunit delta';protein_id=WP_001267941.1;transl_table=11 NC_008258.1 RefSeq gene 1162569 1163366 . + . ID=gene1237;Name=SFV_RS06200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06200;old_locus_tag=SFV_1120 NC_008258.1 Protein Homology CDS 1162569 1163366 . + 0 ID=cds1212;Parent=gene1237;Dbxref=Genbank:WP_000480243.1;Name=WP_000480243.1;gbkey=CDS;product=DNAse;protein_id=WP_000480243.1;transl_table=11 NC_008258.1 RefSeq gene 1163661 1165094 . + . ID=gene1238;Name=SFV_RS06205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06205;old_locus_tag=SFV_1121 NC_008258.1 Protein Homology CDS 1163661 1165094 . + 0 ID=cds1213;Parent=gene1238;Dbxref=Genbank:WP_000475693.1;Name=WP_000475693.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS glucose transporter subunit IIBC;protein_id=WP_000475693.1;transl_table=11 NC_008258.1 RefSeq gene 1165154 1167343 . - . ID=gene1239;Name=SFV_RS06210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06210;old_locus_tag=SFV_1122 NC_008258.1 Protein Homology CDS 1165154 1167343 . - 0 ID=cds1214;Parent=gene1239;Dbxref=Genbank:WP_000953493.1;Name=WP_000953493.1;gbkey=CDS;product=ferric-rhodotorulic acid outer membrane transporter;protein_id=WP_000953493.1;transl_table=11 NC_008258.1 RefSeq gene 1167682 1168041 . + . ID=gene1240;Name=SFV_RS06215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06215;old_locus_tag=SFV_1123 NC_008258.1 Protein Homology CDS 1167682 1168041 . + 0 ID=cds1215;Parent=gene1240;Dbxref=Genbank:WP_000807125.1;Name=WP_000807125.1;gbkey=CDS;product=HIT-like protein HinT;protein_id=WP_000807125.1;transl_table=11 NC_008258.1 RefSeq gene 1168044 1168421 . + . ID=gene1241;Name=SFV_RS06220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06220;old_locus_tag=SFV_1124 NC_008258.1 Protein Homology CDS 1168044 1168421 . + 0 ID=cds1216;Parent=gene1241;Dbxref=Genbank:WP_001225297.1;Name=WP_001225297.1;gbkey=CDS;product=membrane protein;protein_id=WP_001225297.1;transl_table=11 NC_008258.1 RefSeq gene 1168436 1169017 . + . ID=gene1242;Name=SFV_RS06225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06225;old_locus_tag=SFV_1125 NC_008258.1 Protein Homology CDS 1168436 1169017 . + 0 ID=cds1217;Parent=gene1242;Dbxref=Genbank:WP_011587211.1;Name=WP_011587211.1;gbkey=CDS;product=penicillin-binding protein activator LpoB;protein_id=WP_011587211.1;transl_table=11 NC_008258.1 RefSeq gene 1169057 1169881 . + . ID=gene1243;Name=thiK;gbkey=Gene;gene=thiK;gene_biotype=protein_coding;locus_tag=SFV_RS06230;old_locus_tag=SFV_1126 NC_008258.1 Protein Homology CDS 1169057 1169881 . + 0 ID=cds1218;Parent=gene1243;Dbxref=Genbank:WP_001116580.1;Name=WP_001116580.1;Note=catalyzes the phosphorylation of thiamine to thiamine phosphate;gbkey=CDS;gene=thiK;product=thiamine kinase;protein_id=WP_001116580.1;transl_table=11 NC_008258.1 RefSeq gene 1169892 1170917 . + . ID=gene1244;Name=SFV_RS06235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06235;old_locus_tag=SFV_1127 NC_008258.1 Protein Homology CDS 1169892 1170917 . + 0 ID=cds1219;Parent=gene1244;Dbxref=Genbank:WP_000529300.1;Name=WP_000529300.1;Note=hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides;gbkey=CDS;product=beta-hexosaminidase;protein_id=WP_000529300.1;transl_table=11 NC_008258.1 RefSeq gene 1170940 1171482 . + . ID=gene1245;Name=SFV_RS06240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06240;old_locus_tag=SFV_1128 NC_008258.1 Protein Homology CDS 1170940 1171482 . + 0 ID=cds1220;Parent=gene1245;Dbxref=Genbank:WP_000587933.1;Name=WP_000587933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000587933.1;transl_table=11 NC_008258.1 RefSeq gene 1171890 1173194 . + . ID=gene1246;Name=SFV_RS06245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06245;old_locus_tag=SFV_1129 NC_008258.1 Protein Homology CDS 1171890 1173194 . + 0 ID=cds1221;Parent=gene1246;Dbxref=Genbank:WP_005048063.1;Name=WP_005048063.1;gbkey=CDS;product=NADH dehydrogenase;protein_id=WP_005048063.1;transl_table=11 NC_008258.1 RefSeq gene 1173421 1173960 . + . ID=gene1247;Name=SFV_RS06250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06250;old_locus_tag=SFV_1130 NC_008258.1 Protein Homology CDS 1173421 1173960 . + 0 ID=cds1222;Parent=gene1247;Dbxref=Genbank:WP_001043459.1;Name=WP_001043459.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001043459.1;transl_table=11 NC_008258.1 RefSeq gene 1174022 1174654 . - . ID=gene1248;Name=SFV_RS06255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06255;old_locus_tag=SFV_1131 NC_008258.1 Protein Homology CDS 1174022 1174654 . - 0 ID=cds1223;Parent=gene1248;Dbxref=Genbank:WP_000179805.1;Name=WP_000179805.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_000179805.1;transl_table=11 NC_008258.1 RefSeq gene 1174939 1175151 . + . ID=gene1249;Name=SFV_RS06260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06260;old_locus_tag=SFV_1132 NC_008258.1 Protein Homology CDS 1174939 1175151 . + 0 ID=cds1224;Parent=gene1249;Dbxref=Genbank:WP_000006497.1;Name=WP_000006497.1;gbkey=CDS;product=multiple stress resistance protein BhsA;protein_id=WP_000006497.1;transl_table=11 NC_008258.1 RefSeq gene 1175234 1176193 . - . ID=gene1250;Name=SFV_RS06265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06265;old_locus_tag=SFV_1133 NC_008258.1 Protein Homology CDS 1175234 1176193 . - 0 ID=cds1225;Parent=gene1250;Dbxref=Genbank:WP_000598221.1;Name=WP_000598221.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_000598221.1;transl_table=11 NC_008258.1 RefSeq gene 1176339 1179785 . - . ID=gene1251;Name=SFV_RS06270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06270;old_locus_tag=SFV_1134 NC_008258.1 Protein Homology CDS 1176339 1179785 . - 0 ID=cds1226;Parent=gene1251;Dbxref=Genbank:WP_024260259.1;Name=WP_024260259.1;gbkey=CDS;product=transcription-repair coupling factor;protein_id=WP_024260259.1;transl_table=11 NC_008258.1 RefSeq gene 1179913 1180986 . - . ID=gene1252;Name=SFV_RS06275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06275;old_locus_tag=SFV_1135 NC_008258.1 Protein Homology CDS 1179913 1180986 . - 0 ID=cds1227;Parent=gene1252;Dbxref=Genbank:WP_000810296.1;Name=WP_000810296.1;gbkey=CDS;product=membrane protein;protein_id=WP_000810296.1;transl_table=11 NC_008258.1 RefSeq gene 1181248 1182447 . + . ID=gene1253;Name=SFV_RS06280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06280;old_locus_tag=SFV_1136 NC_008258.1 Protein Homology CDS 1181248 1182447 . + 0 ID=cds1228;Parent=gene1253;Dbxref=Genbank:WP_024260260.1;Name=WP_024260260.1;Note=part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane;gbkey=CDS;product=outer membrane-specific lipoprotein transporter subunit LolC;protein_id=WP_024260260.1;transl_table=11 NC_008258.1 RefSeq gene 1182440 1183141 . + . ID=gene1254;Name=lolD;gbkey=Gene;gene=lolD;gene_biotype=protein_coding;locus_tag=SFV_RS06285;old_locus_tag=SFV_1137 NC_008258.1 Protein Homology CDS 1182440 1183141 . + 0 ID=cds1229;Parent=gene1254;Dbxref=Genbank:WP_001033691.1;Name=WP_001033691.1;Note=outer membrane specific%3B part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins%2C from the inner membrane to the periplasmic chaperone;gbkey=CDS;gene=lolD;product=lipoprotein-releasing system ATP-binding protein LolD;protein_id=WP_001033691.1;transl_table=11 NC_008258.1 RefSeq gene 1183141 1184385 . + . ID=gene1255;Name=SFV_RS06290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06290;old_locus_tag=SFV_1138 NC_008258.1 Protein Homology CDS 1183141 1184385 . + 0 ID=cds1230;Parent=gene1255;Dbxref=Genbank:WP_001251390.1;Name=WP_001251390.1;Note=part of the ATP-dependent transport system LolCDE%3B responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane;gbkey=CDS;product=transporter;protein_id=WP_001251390.1;transl_table=11 NC_008258.1 RefSeq gene 1184414 1185325 . + . ID=gene1256;Name=SFV_RS06295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06295;old_locus_tag=SFV_1139 NC_008258.1 Protein Homology CDS 1184414 1185325 . + 0 ID=cds1231;Parent=gene1256;Dbxref=Genbank:WP_000291255.1;Name=WP_000291255.1;Note=catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine;gbkey=CDS;product=N-acetyl-D-glucosamine kinase;protein_id=WP_000291255.1;transl_table=11 NC_008258.1 RefSeq gene 1185341 1186162 . + . ID=gene1257;Name=SFV_RS06300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06300;old_locus_tag=SFV_1140 NC_008258.1 Protein Homology CDS 1185341 1186162 . + 0 ID=cds1232;Parent=gene1257;Dbxref=Genbank:WP_000952739.1;Name=WP_000952739.1;Note=Modulates the activities of several enzymes which are inactive in their acetylated form;gbkey=CDS;product=NAD-dependent deacetylase;protein_id=WP_000952739.1;transl_table=11 NC_008258.1 RefSeq gene 1186318 1187364 . - . ID=gene1258;Name=potD;gbkey=Gene;gene=potD;gene_biotype=protein_coding;locus_tag=SFV_RS06305;old_locus_tag=SFV_1141 NC_008258.1 Protein Homology CDS 1186318 1187364 . - 0 ID=cds1233;Parent=gene1258;Dbxref=Genbank:WP_000759317.1;Name=WP_000759317.1;Note=can transport spermidine and putrescine but affinity is higher for spermidine%3B forms a complex of PotA2BCD%3B PotD is a periplasmic component that binds the substrate;gbkey=CDS;gene=potD;product=spermidine/putrescine-binding periplasmic protein;protein_id=WP_000759317.1;transl_table=11 NC_008258.1 RefSeq gene 1187361 1188155 . - . ID=gene1259;Name=potC;gbkey=Gene;gene=potC;gene_biotype=protein_coding;locus_tag=SFV_RS06310;old_locus_tag=SFV_1142 NC_008258.1 Protein Homology CDS 1187361 1188155 . - 0 ID=cds1234;Parent=gene1259;Dbxref=Genbank:WP_000580316.1;Name=WP_000580316.1;Note=can transport spermidine and putrescine but affinity is higher for spermidine%3B forms a complex of PotA2BCD%3B PotC is a membrane component;gbkey=CDS;gene=potC;product=spermidine/putrescine ABC transporter permease;protein_id=WP_000580316.1;transl_table=11 NC_008258.1 RefSeq gene 1188152 1189009 . - . ID=gene1260;Name=potB;gbkey=Gene;gene=potB;gene_biotype=protein_coding;locus_tag=SFV_RS06315;old_locus_tag=SFV_1143 NC_008258.1 Protein Homology CDS 1188152 1189009 . - 0 ID=cds1235;Parent=gene1260;Dbxref=Genbank:WP_000799401.1;Name=WP_000799401.1;Note=can transport spermidine and putrescine but affinity is higher for spermidine%3B forms a complex of PotA2BCD%3B PotB is a membrane component;gbkey=CDS;gene=potB;product=spermidine/putrescine ABC transporter permease;protein_id=WP_000799401.1;transl_table=11 NC_008258.1 RefSeq gene 1188993 1190129 . - . ID=gene1261;Name=potA;gbkey=Gene;gene=potA;gene_biotype=protein_coding;locus_tag=SFV_RS06320;old_locus_tag=SFV_1144 NC_008258.1 Protein Homology CDS 1188993 1190129 . - 0 ID=cds1236;Parent=gene1261;Dbxref=Genbank:WP_000531591.1;Name=WP_000531591.1;Note=functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport%3B PotA is the membrane-associated ATPase;gbkey=CDS;gene=potA;product=Fe3+/spermidine/putrescine ABC transporter ATP-binding protein;protein_id=WP_000531591.1;transl_table=11 NC_008258.1 RefSeq gene 1190108 1190323 . - . ID=gene1262;Name=SFV_RS06325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06325 NC_008258.1 Protein Homology CDS 1190108 1190323 . - 0 ID=cds1237;Parent=gene1262;Dbxref=Genbank:WP_044023832.1;Name=WP_044023832.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044023832.1;transl_table=11 NC_008258.1 RefSeq gene 1190379 1191605 . + . ID=gene1263;Name=SFV_RS06330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06330;old_locus_tag=SFV_1145 NC_008258.1 Protein Homology CDS 1190379 1191605 . + 0 ID=cds1238;Parent=gene1263;Dbxref=Genbank:WP_000359445.1;Name=WP_000359445.1;gbkey=CDS;product=peptidase T;protein_id=WP_000359445.1;transl_table=11 NC_008258.1 RefSeq gene 1191654 1192775 . - . ID=gene1264;Name=SFV_RS06335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06335;old_locus_tag=SFV_1146 NC_008258.1 Protein Homology CDS 1191654 1192775 . - 0 ID=cds1239;Parent=gene1264;Dbxref=Genbank:WP_024260261.1;Name=WP_024260261.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260261.1;transl_table=11 NC_008258.1 RefSeq gene 1193024 1194253 . + . ID=gene1265;Name=SFV_RS06340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06340;old_locus_tag=SFV_1147 NC_008258.1 Protein Homology CDS 1193024 1194253 . + 0 ID=cds1240;Parent=gene1265;Dbxref=Genbank:WP_000085262.1;Name=WP_000085262.1;gbkey=CDS;product=integrase;protein_id=WP_000085262.1;transl_table=11 NC_008258.1 RefSeq gene 1194628 1194816 . + . ID=gene1266;Name=SFV_RS06345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06345 NC_008258.1 Protein Homology CDS 1194628 1194816 . + 0 ID=cds1241;Parent=gene1266;Dbxref=Genbank:WP_000953271.1;Name=WP_000953271.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000953271.1;transl_table=11 NC_008258.1 RefSeq gene 1194874 1195323 . + . ID=gene1267;Name=SFV_RS06350;end_range=1195323,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06350;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1194874 1195323 . + 0 ID=cds1242;Parent=gene1267;end_range=1195323,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1195320 1195499 . - . ID=gene1268;Name=SFV_RS06355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06355 NC_008258.1 Protein Homology CDS 1195320 1195499 . - 0 ID=cds1243;Parent=gene1268;Dbxref=Genbank:WP_000103622.1;Name=WP_000103622.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000103622.1;transl_table=11 NC_008258.1 RefSeq gene 1195629 1195829 . + . ID=gene1269;Name=SFV_RS06360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06360 NC_008258.1 Protein Homology CDS 1195629 1195829 . + 0 ID=cds1244;Parent=gene1269;Dbxref=Genbank:WP_000226783.1;Name=WP_000226783.1;gbkey=CDS;product=Icd-like protein;protein_id=WP_000226783.1;transl_table=11 NC_008258.1 RefSeq gene 1195819 1196040 . + . ID=gene1270;Name=SFV_RS06365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06365 NC_008258.1 Protein Homology CDS 1195819 1196040 . + 0 ID=cds1245;Parent=gene1270;Dbxref=Genbank:WP_005005155.1;Name=WP_005005155.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005005155.1;transl_table=11 NC_008258.1 RefSeq gene 1195985 1196253 . + . ID=gene1271;Name=SFV_RS06370;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06370;pseudo=true NC_008258.1 Protein Homology CDS 1195985 1196253 . + 0 ID=cds1246;Parent=gene1271;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1196255 1196488 . + . ID=gene1272;Name=SFV_RS06375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06375 NC_008258.1 Protein Homology CDS 1196255 1196488 . + 0 ID=cds1247;Parent=gene1272;Dbxref=Genbank:WP_001204964.1;Name=WP_001204964.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001204964.1;transl_table=11 NC_008258.1 RefSeq gene 1196494 1196793 . + . ID=gene1273;Name=SFV_RS06380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06380;old_locus_tag=SFV_1149 NC_008258.1 Protein Homology CDS 1196494 1196793 . + 0 ID=cds1248;Parent=gene1273;Dbxref=Genbank:WP_000770157.1;Name=WP_000770157.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000770157.1;transl_table=11 NC_008258.1 RefSeq gene 1196790 1198538 . + . ID=gene1274;Name=SFV_RS06385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06385;old_locus_tag=SFV_1150 NC_008258.1 Protein Homology CDS 1196790 1198538 . + 0 ID=cds1249;Parent=gene1274;Dbxref=Genbank:WP_000761787.1;Name=WP_000761787.1;gbkey=CDS;product=DNA primase;protein_id=WP_000761787.1;transl_table=11 NC_008258.1 RefSeq gene 1198827 1199105 . + . ID=gene1275;Name=SFV_RS06390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06390 NC_008258.1 Protein Homology CDS 1198827 1199105 . + 0 ID=cds1250;Parent=gene1275;Dbxref=Genbank:WP_000557473.1;Name=WP_000557473.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000557473.1;transl_table=11 NC_008258.1 RefSeq gene 1199102 1199407 . + . ID=gene1276;Name=SFV_RS06395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06395;old_locus_tag=SFV_1151 NC_008258.1 Protein Homology CDS 1199102 1199407 . + 0 ID=cds1251;Parent=gene1276;Dbxref=Genbank:WP_001294164.1;Name=WP_001294164.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001294164.1;transl_table=11 NC_008258.1 RefSeq gene 1199720 1199944 . + . ID=gene1277;Name=SFV_RS06400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06400 NC_008258.1 Protein Homology CDS 1199720 1199944 . + 0 ID=cds1252;Parent=gene1277;Dbxref=Genbank:WP_001132078.1;Name=WP_001132078.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001132078.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1200253 1201028 . + . ID=id178;gbkey=repeat_region NC_008258.1 RefSeq region 1200257 1201024 . - . ID=id179;gbkey=mobile_element NC_008258.1 RefSeq gene 1200272 1200667 . - . ID=gene1278;Name=SFV_RS06405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06405 NC_008258.1 Protein Homology CDS 1200272 1200667 . - 0 ID=cds1253;Parent=gene1278;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 1200694 1200918 . - . ID=gene1279;Name=SFV_RS06410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06410 NC_008258.1 Protein Homology CDS 1200694 1200918 . - 0 ID=cds1254;Parent=gene1279;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1201073 1202179 . + . ID=gene1280;Name=SFV_RS06415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06415;pseudo=true NC_008258.1 Protein Homology CDS 1201073 1202179 . + 0 ID=cds1255;Parent=gene1280;gbkey=CDS;product=capsid protein;pseudo=true;transl_except=(pos:1201847..1201849%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1202234 1202791 . + . ID=gene1281;Name=SFV_RS06420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06420;old_locus_tag=SFV_1157 NC_008258.1 Protein Homology CDS 1202234 1202791 . + 0 ID=cds1256;Parent=gene1281;Dbxref=Genbank:WP_005032685.1;Name=WP_005032685.1;gbkey=CDS;product=peptidase;protein_id=WP_005032685.1;transl_table=11 NC_008258.1 RefSeq gene 1202793 1204004 . + . ID=gene1282;Name=SFV_RS06425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06425;old_locus_tag=SFV_1158 NC_008258.1 Protein Homology CDS 1202793 1204004 . + 0 ID=cds1257;Parent=gene1282;Dbxref=Genbank:WP_000267601.1;Name=WP_000267601.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000267601.1;transl_table=11 NC_008258.1 RefSeq gene 1204001 1204339 . + . ID=gene1283;Name=SFV_RS06430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06430 NC_008258.1 Protein Homology CDS 1204001 1204339 . + 0 ID=cds1258;Parent=gene1283;Dbxref=Genbank:WP_001020663.1;Name=WP_001020663.1;gbkey=CDS;product=head-tail adaptor;protein_id=WP_001020663.1;transl_table=11 NC_008258.1 RefSeq gene 1204336 1204632 . + . ID=gene1284;Name=SFV_RS06435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06435;old_locus_tag=SFV_1159 NC_008258.1 Protein Homology CDS 1204336 1204632 . + 0 ID=cds1259;Parent=gene1284;Dbxref=Genbank:WP_000134108.1;Name=WP_000134108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000134108.1;transl_table=11 NC_008258.1 RefSeq gene 1204632 1205072 . + . ID=gene1285;Name=SFV_RS06440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06440 NC_008258.1 Protein Homology CDS 1204632 1205072 . + 0 ID=cds1260;Parent=gene1285;Dbxref=Genbank:WP_001145905.1;Name=WP_001145905.1;gbkey=CDS;product=HNH endonuclease;protein_id=WP_001145905.1;transl_table=11 NC_008258.1 RefSeq gene 1205065 1205238 . + . ID=gene1286;Name=SFV_RS06445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06445 NC_008258.1 Protein Homology CDS 1205065 1205238 . + 0 ID=cds1261;Parent=gene1286;Dbxref=Genbank:WP_001005703.1;Name=WP_001005703.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001005703.1;transl_table=11 NC_008258.1 RefSeq gene 1205309 1205620 . + . ID=gene1287;Name=SFV_RS06450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06450;old_locus_tag=SFV_1160 NC_008258.1 Protein Homology CDS 1205309 1205620 . + 0 ID=cds1262;Parent=gene1287;Dbxref=Genbank:WP_000816069.1;Name=WP_000816069.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000816069.1;transl_table=11 NC_008258.1 RefSeq gene 1205604 1207265 . + . ID=gene1288;Name=SFV_RS06455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06455;old_locus_tag=SFV_1161 NC_008258.1 Protein Homology CDS 1205604 1207265 . + 0 ID=cds1263;Parent=gene1288;Dbxref=Genbank:WP_000127894.1;Name=WP_000127894.1;gbkey=CDS;product=terminase;protein_id=WP_000127894.1;transl_table=11 NC_008258.1 RefSeq gene 1207279 1207560 . + . ID=gene1289;Name=SFV_RS06460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06460;old_locus_tag=SFV_1162 NC_008258.1 Protein Homology CDS 1207279 1207560 . + 0 ID=cds1264;Parent=gene1289;Dbxref=Genbank:WP_000133415.1;Name=WP_000133415.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000133415.1;transl_table=11 NC_008258.1 RefSeq gene 1208357 1209817 . - . ID=gene1290;Name=SFV_RS06470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06470;old_locus_tag=SFV_1164 NC_008258.1 Protein Homology CDS 1208357 1209817 . - 0 ID=cds1265;Parent=gene1290;Dbxref=Genbank:WP_000735425.1;Name=WP_000735425.1;gbkey=CDS;product=Virulence sensor protein PhoQ;protein_id=WP_000735425.1;transl_table=11 NC_008258.1 RefSeq gene 1209817 1210488 . - . ID=gene1291;Name=SFV_RS06475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06475;old_locus_tag=SFV_1165 NC_008258.1 Protein Homology CDS 1209817 1210488 . - 0 ID=cds1266;Parent=gene1291;Dbxref=Genbank:WP_001265481.1;Name=WP_001265481.1;Note=response regulator in two-component regulatory system with PhoQ%3B involved in magnesium starvation and stress;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001265481.1;transl_table=11 NC_008258.1 RefSeq gene 1210657 1212027 . - . ID=gene1292;Name=SFV_RS06480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06480;old_locus_tag=SFV_1166 NC_008258.1 Protein Homology CDS 1210657 1212027 . - 0 ID=cds1267;Parent=gene1292;Dbxref=Genbank:WP_000423724.1;Name=WP_000423724.1;Note=Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide;gbkey=CDS;product=adenylosuccinate lyase;protein_id=WP_000423724.1;transl_table=11 NC_008258.1 RefSeq gene 1212031 1212672 . - . ID=gene1293;Name=SFV_RS06485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06485;old_locus_tag=SFV_1167 NC_008258.1 Protein Homology CDS 1212031 1212672 . - 0 ID=cds1268;Parent=gene1293;Dbxref=Genbank:WP_005047980.1;Name=WP_005047980.1;Note=HflD%3B UPF0274%3B in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein%3B in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis;gbkey=CDS;product=High frequency lysogenization protein HflD homolog;protein_id=WP_005047980.1;transl_table=11 NC_008258.1 RefSeq gene 1212708 1213814 . - . ID=gene1294;Name=mnmA;gbkey=Gene;gene=mnmA;gene_biotype=protein_coding;locus_tag=SFV_RS06490;old_locus_tag=SFV_1168 NC_008258.1 Protein Homology CDS 1212708 1213814 . - 0 ID=cds1269;Parent=gene1294;Dbxref=Genbank:WP_005047976.1;Name=WP_005047976.1;Note=catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs;gbkey=CDS;gene=mnmA;product=tRNA-specific 2-thiouridylase MnmA;protein_id=WP_005047976.1;transl_table=11 NC_008258.1 RefSeq gene 1213868 1214329 . - . ID=gene1295;Name=SFV_RS06495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06495;old_locus_tag=SFV_1169 NC_008258.1 Protein Homology CDS 1213868 1214329 . - 0 ID=cds1270;Parent=gene1295;Dbxref=Genbank:WP_000476093.1;Name=WP_000476093.1;gbkey=CDS;product=phosphatase;protein_id=WP_000476093.1;transl_table=11 NC_008258.1 RefSeq gene 1214339 1214992 . - . ID=gene1296;Name=SFV_RS06500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06500;old_locus_tag=SFV_1170 NC_008258.1 Protein Homology CDS 1214339 1214992 . - 0 ID=cds1271;Parent=gene1296;Dbxref=Genbank:WP_001248670.1;Name=WP_001248670.1;Note=catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase E;protein_id=WP_001248670.1;transl_table=11 NC_008258.1 RefSeq gene 1215164 1216414 . + . ID=gene1297;Name=SFV_RS06505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06505;old_locus_tag=SFV_1171 NC_008258.1 Protein Homology CDS 1215164 1216414 . + 0 ID=cds1272;Parent=gene1297;Dbxref=Genbank:WP_000444487.1;Name=WP_000444487.1;Note=Converts isocitrate to alpha ketoglutarate;gbkey=CDS;product=isocitrate dehydrogenase;protein_id=WP_000444487.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1216502 1217280 . + . ID=id180;gbkey=repeat_region NC_008258.1 RefSeq region 1216506 1217273 . - . ID=id181;gbkey=mobile_element NC_008258.1 RefSeq gene 1216521 1217024 . - . ID=gene1298;Name=SFV_RS06510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06510;old_locus_tag=SFV_1172 NC_008258.1 Protein Homology CDS 1216521 1217024 . - 0 ID=cds1273;Parent=gene1298;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 1216943 1217167 . - . ID=gene1299;Name=SFV_RS06515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06515 NC_008258.1 Protein Homology CDS 1216943 1217167 . - 0 ID=cds1274;Parent=gene1299;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1217382 1217591 . + . ID=gene1300;Name=SFV_RS06520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06520 NC_008258.1 Protein Homology CDS 1217382 1217591 . + 0 ID=cds1275;Parent=gene1300;Dbxref=Genbank:WP_005047951.1;Name=WP_005047951.1;gbkey=CDS;product=ATPase;protein_id=WP_005047951.1;transl_table=11 NC_008258.1 RefSeq gene 1217708 1220029 . + . ID=gene1301;Name=SFV_RS06525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06525;old_locus_tag=SFV_1174 NC_008258.1 Protein Homology CDS 1217708 1220029 . + 0 ID=cds1276;Parent=gene1301;Dbxref=Genbank:WP_024260262.1;Name=WP_024260262.1;gbkey=CDS;product=autotransporter;protein_id=WP_024260262.1;transl_table=11 NC_008258.1 RefSeq gene 1220086 1220415 . - . ID=gene1302;Name=SFV_RS06530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06530;old_locus_tag=SFV_1175 NC_008258.1 Protein Homology CDS 1220086 1220415 . - 0 ID=cds1277;Parent=gene1302;Dbxref=Genbank:WP_001295611.1;Name=WP_001295611.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295611.1;transl_table=11 NC_008258.1 RefSeq gene 1220425 1220769 . - . ID=gene1303;Name=SFV_RS06535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06535;old_locus_tag=SFV_1176 NC_008258.1 Protein Homology CDS 1220425 1220769 . - 0 ID=cds1278;Parent=gene1303;Dbxref=Genbank:WP_000726974.1;Name=WP_000726974.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000726974.1;transl_table=11 NC_008258.1 RefSeq gene 1220771 1220944 . - . ID=gene1304;Name=SFV_RS06540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06540 NC_008258.1 Protein Homology CDS 1220771 1220944 . - 0 ID=cds1279;Parent=gene1304;Dbxref=Genbank:WP_000122462.1;Name=WP_000122462.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000122462.1;transl_table=11 NC_008258.1 RefSeq gene 1221363 1221689 . + . ID=gene1305;Name=SFV_RS06545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06545 NC_008258.1 Protein Homology CDS 1221363 1221689 . + 0 ID=cds1280;Parent=gene1305;Dbxref=Genbank:WP_000444393.1;Name=WP_000444393.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000444393.1;transl_table=11 NC_008258.1 RefSeq gene 1222061 1222327 . - . ID=gene1306;Name=minE;gbkey=Gene;gene=minE;gene_biotype=protein_coding;locus_tag=SFV_RS06550;old_locus_tag=SFV_1178 NC_008258.1 Protein Homology CDS 1222061 1222327 . - 0 ID=cds1281;Parent=gene1306;Dbxref=Genbank:WP_001185665.1;Name=WP_001185665.1;Note=works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell;gbkey=CDS;gene=minE;product=cell division topological specificity factor;protein_id=WP_001185665.1;transl_table=11 NC_008258.1 RefSeq gene 1222331 1223143 . - . ID=gene1307;Name=SFV_RS06555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06555;old_locus_tag=SFV_1179 NC_008258.1 Protein Homology CDS 1222331 1223143 . - 0 ID=cds1282;Parent=gene1307;Dbxref=Genbank:WP_000101055.1;Name=WP_000101055.1;Note=ATPase%3B with MinC inhibits cell division by blocking formation of the polar Z ring septums;gbkey=CDS;product=septum site-determining protein MinD;protein_id=WP_000101055.1;transl_table=11 NC_008258.1 RefSeq gene 1223167 1223862 . - . ID=gene1308;Name=minC;gbkey=Gene;gene=minC;gene_biotype=protein_coding;locus_tag=SFV_RS06560;old_locus_tag=SFV_1180 NC_008258.1 Protein Homology CDS 1223167 1223862 . - 0 ID=cds1283;Parent=gene1308;Dbxref=Genbank:WP_005047937.1;Name=WP_005047937.1;Note=blocks the formation of polar Z-ring septums;gbkey=CDS;gene=minC;product=septum site-determining protein MinC;protein_id=WP_005047937.1;transl_table=11 NC_008258.1 RefSeq gene 1224382 1224603 . + . ID=gene1309;Name=SFV_RS06565;end_range=1224603,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06565;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1224382 1224603 . + 0 ID=cds1284;Parent=gene1309;end_range=1224603,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1224590 1225923 . + . ID=id182;gbkey=repeat_region NC_008258.1 RefSeq region 1224591 1225921 . - . ID=id183;gbkey=mobile_element NC_008258.1 RefSeq gene 1224602 1225507 . - . ID=gene1310;Name=SFV_RS06570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06570;old_locus_tag=SFV_1181 NC_008258.1 Protein Homology CDS 1224602 1225507 . - 0 ID=cds1285;Parent=gene1310;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 1225465 1225830 . - . ID=gene1311;Name=SFV_RS06575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06575;old_locus_tag=SFV_1182 NC_008258.1 Protein Homology CDS 1225465 1225830 . - 0 ID=cds1286;Parent=gene1311;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1225922 1226086 . + . ID=gene1312;Name=SFV_RS06580;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06580;partial=true;pseudo=true;start_range=.,1225922 NC_008258.1 Protein Homology CDS 1225922 1226086 . + 0 ID=cds1287;Parent=gene1312;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1225922;transl_table=11 NC_008258.1 RefSeq gene 1226194 1226466 . - . ID=gene1313;Name=SFV_RS06585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06585 NC_008258.1 Protein Homology CDS 1226194 1226466 . - 0 ID=cds1288;Parent=gene1313;Dbxref=Genbank:WP_048814494.1;Name=WP_048814494.1;gbkey=CDS;product=inhibitor of g-type lysozyme;protein_id=WP_048814494.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1226492 1227751 . + . ID=id184;gbkey=repeat_region NC_008258.1 RefSeq region 1226492 1227749 . + . ID=id185;gbkey=mobile_element NC_008258.1 RefSeq gene 1226557 1226856 . + . ID=gene1314;Name=SFV_RS06590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06590;old_locus_tag=SFV_1184 NC_008258.1 Protein Homology CDS 1226557 1226856 . + 0 ID=cds1289;Parent=gene1314;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NC_008258.1 RefSeq gene 1226853 1227707 . + . ID=gene1315;Name=SFV_RS06595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06595;old_locus_tag=SFV_1185 NC_008258.1 Protein Homology CDS 1226853 1227707 . + 0 ID=cds1290;Parent=gene1315;Dbxref=Genbank:WP_001472689.1;Name=WP_001472689.1;gbkey=CDS;product=transposase;protein_id=WP_001472689.1;transl_table=11 NC_008258.1 RefSeq gene 1227716 1227856 . - . ID=gene1316;Name=SFV_RS06600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06600 NC_008258.1 Protein Homology CDS 1227716 1227856 . - 0 ID=cds1291;Parent=gene1316;Dbxref=Genbank:WP_005061990.1;Name=WP_005061990.1;gbkey=CDS;product=peptidase;protein_id=WP_005061990.1;transl_table=11 NC_008258.1 RefSeq gene 1228065 1228391 . + . ID=gene1317;Name=SFV_RS06610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06610;old_locus_tag=SFV_1186 NC_008258.1 Protein Homology CDS 1228065 1228391 . + 0 ID=cds1292;Parent=gene1317;Dbxref=Genbank:WP_001125718.1;Name=WP_001125718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001125718.1;transl_table=11 NC_008258.1 RefSeq gene 1228463 1229122 . + . ID=gene1318;Name=SFV_RS06615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06615;old_locus_tag=SFV_1187 NC_008258.1 Protein Homology CDS 1228463 1229122 . + 0 ID=cds1293;Parent=gene1318;Dbxref=Genbank:WP_000284272.1;Name=WP_000284272.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000284272.1;transl_table=11 NC_008258.1 RefSeq gene 1229199 1229660 . + . ID=gene1319;Name=SFV_RS06620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06620;old_locus_tag=SFV_1188 NC_008258.1 Protein Homology CDS 1229199 1229660 . + 0 ID=cds1294;Parent=gene1319;Dbxref=Genbank:WP_000807626.1;Name=WP_000807626.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000807626.1;transl_table=11 NC_008258.1 RefSeq gene 1229867 1230148 . - . ID=gene1320;Name=SFV_RS06625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06625 NC_008258.1 Protein Homology CDS 1229867 1230148 . - 0 ID=cds1295;Parent=gene1320;Dbxref=Genbank:WP_005049639.1;Name=WP_005049639.1;gbkey=CDS;product=hemolysin activation protein HecB;protein_id=WP_005049639.1;transl_table=11 NC_008258.1 RefSeq gene 1230426 1230767 . - . ID=gene1321;Name=SFV_RS06630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06630 NC_008258.1 Protein Homology CDS 1230426 1230767 . - 0 ID=cds1296;Parent=gene1321;Dbxref=Genbank:WP_005049640.1;Name=WP_005049640.1;gbkey=CDS;product=hemolysin activation protein HecB;protein_id=WP_005049640.1;transl_table=11 NC_008258.1 RefSeq gene 1231140 1231559 . + . ID=gene1322;Name=SFV_RS06635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06635;old_locus_tag=SFV_1190 NC_008258.1 Protein Homology CDS 1231140 1231559 . + 0 ID=cds1297;Parent=gene1322;Dbxref=Genbank:WP_000897378.1;Name=WP_000897378.1;Note=binds with UmuC protein to form functional DNA pol V (UmuD'2UmuC)%3B involved in translesion polymerization;gbkey=CDS;product=protein UmuD;protein_id=WP_000897378.1;transl_table=11 NC_008258.1 RefSeq gene 1231559 1232827 . + . ID=gene1323;Name=SFV_RS06640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06640;old_locus_tag=SFV_1191 NC_008258.1 Protein Homology CDS 1231559 1232827 . + 0 ID=cds1298;Parent=gene1323;Dbxref=Genbank:WP_000457611.1;Name=WP_000457611.1;Note=binds processed UmuD protein to form functional DNA pol V (UmuD'2UmuC)%3B involved in translesion polymerization;gbkey=CDS;product=DNA polymerase V subunit UmuC;protein_id=WP_000457611.1;transl_table=11 NC_008258.1 RefSeq gene 1232873 1233403 . - . ID=gene1324;Name=SFV_RS06645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06645;old_locus_tag=SFV_1192 NC_008258.1 Protein Homology CDS 1232873 1233403 . - 0 ID=cds1299;Parent=gene1324;Dbxref=Genbank:WP_000943462.1;Name=WP_000943462.1;Note=disulfide oxidoreductase%3B integral membrane protein%3B required for perioplasmic disulfide bond formation%3B oxidizes DsbA protein;gbkey=CDS;product=disulfide bond formation protein B;protein_id=WP_000943462.1;transl_table=11 NC_008258.1 RefSeq gene 1233549 1235090 . - . ID=gene1325;Name=nhaB;gbkey=Gene;gene=nhaB;gene_biotype=protein_coding;locus_tag=SFV_RS06650;old_locus_tag=SFV_1193 NC_008258.1 Protein Homology CDS 1233549 1235090 . - 0 ID=cds1300;Parent=gene1325;Dbxref=Genbank:WP_000406409.1;Name=WP_000406409.1;Note=involved in regulation of intracellular pH under alkaline conditions;gbkey=CDS;gene=nhaB;product=Na+/H+ antiporter NhaB;protein_id=WP_000406409.1;transl_table=11 NC_008258.1 RefSeq gene 1235311 1236030 . + . ID=gene1326;Name=SFV_RS06655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06655;old_locus_tag=SFV_1194 NC_008258.1 Protein Homology CDS 1235311 1236030 . + 0 ID=cds1301;Parent=gene1326;Dbxref=Genbank:WP_000234823.1;Name=WP_000234823.1;Note=Multifunctional regulator of fatty acid metabolism;gbkey=CDS;product=fatty acid metabolism regulator protein;protein_id=WP_000234823.1;transl_table=11 NC_008258.1 RefSeq gene 1236082 1237614 . - . ID=gene1327;Name=SFV_RS06660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06660;old_locus_tag=SFV_1195 NC_008258.1 Protein Homology CDS 1236082 1237614 . - 0 ID=cds1302;Parent=gene1327;Dbxref=Genbank:WP_000190835.1;Name=WP_000190835.1;gbkey=CDS;product=SpoVR family protein;protein_id=WP_000190835.1;transl_table=11 NC_008258.1 RefSeq gene 1237944 1239242 . + . ID=gene1328;Name=SFV_RS06665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06665;old_locus_tag=SFV_1196 NC_008258.1 Protein Homology CDS 1237944 1239242 . + 0 ID=cds1303;Parent=gene1328;Dbxref=Genbank:WP_001266897.1;Name=WP_001266897.1;Note=catalyzes the oxidative deamination of D-amino acids;gbkey=CDS;product=D-amino acid dehydrogenase;protein_id=WP_001266897.1;transl_table=11 NC_008258.1 RefSeq gene 1239252 1240322 . + . ID=gene1329;Name=SFV_RS06670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06670;old_locus_tag=SFV_1197 NC_008258.1 Protein Homology CDS 1239252 1240322 . + 0 ID=cds1304;Parent=gene1329;Dbxref=Genbank:WP_000197854.1;Name=WP_000197854.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;product=alanine racemase;protein_id=WP_000197854.1;transl_table=11 NC_008258.1 RefSeq gene 1240490 1241788 . - . ID=gene1330;Name=SFV_RS06675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06675;pseudo=true NC_008258.1 Protein Homology CDS 1240490 1241788 . - 0 ID=cds1305;Parent=gene1330;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1240754..1240756)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1242515 1244251 . - . ID=gene1331;Name=cvrA;gbkey=Gene;gene=cvrA;gene_biotype=protein_coding;gene_synonym=nhaP2,ycgO;locus_tag=SFV_RS06680;old_locus_tag=SFV_1199 NC_008258.1 Protein Homology CDS 1242515 1244251 . - 0 ID=cds1306;Parent=gene1331;Dbxref=Genbank:WP_000340206.1;Name=WP_000340206.1;Note=the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter%3B can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli;gbkey=CDS;gene=cvrA;product=K+/H+ antiporter NhaP2;protein_id=WP_000340206.1;transl_table=11 NC_008258.1 RefSeq gene 1244346 1245260 . - . ID=gene1332;Name=ldcA;gbkey=Gene;gene=ldcA;gene_biotype=protein_coding;locus_tag=SFV_RS06685;old_locus_tag=SFV_1201 NC_008258.1 Protein Homology CDS 1244346 1245260 . - 0 ID=cds1307;Parent=gene1332;Dbxref=Genbank:WP_000051626.1;Name=WP_000051626.1;Note=catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine;gbkey=CDS;gene=ldcA;product=L%2CD-carboxypeptidase A;protein_id=WP_000051626.1;transl_table=11 NC_008258.1 RefSeq gene 1245360 1245971 . + . ID=gene1333;Name=emtA;gbkey=Gene;gene=emtA;gene_biotype=protein_coding;locus_tag=SFV_RS06690;old_locus_tag=SFV_1200 NC_008258.1 Protein Homology CDS 1245360 1245971 . + 0 ID=cds1308;Parent=gene1333;Dbxref=Genbank:WP_001295616.1;Name=WP_001295616.1;Note=catalyzes the cleavage of 1-4 beta-glycoside linkaged between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan;gbkey=CDS;gene=emtA;product=murein transglycosylase;protein_id=WP_001295616.1;transl_table=11 NC_008258.1 RefSeq gene 1245973 1246707 . - . ID=gene1334;Name=SFV_RS06695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06695;old_locus_tag=SFV_1202 NC_008258.1 Protein Homology CDS 1245973 1246707 . - 0 ID=cds1309;Parent=gene1334;Dbxref=Genbank:WP_000020162.1;Name=WP_000020162.1;gbkey=CDS;product=flagellar brake protein YcgR;protein_id=WP_000020162.1;transl_table=11 NC_008258.1 RefSeq gene 1246908 1247162 . + . ID=gene1335;Name=SFV_RS06700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06700;old_locus_tag=SFV_1203 NC_008258.1 Protein Homology CDS 1246908 1247162 . + 0 ID=cds1310;Parent=gene1335;Dbxref=Genbank:WP_000511312.1;Name=WP_000511312.1;gbkey=CDS;product=membrane protein;protein_id=WP_000511312.1;transl_table=11 NC_008258.1 RefSeq gene 1247212 1249168 . - . ID=gene1336;Name=SFV_RS06705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06705;pseudo=true NC_008258.1 Protein Homology CDS 1247212 1249168 . - 0 ID=cds1311;Parent=gene1336;exception=annotated by transcript or proteomic data;gbkey=CDS;product=TonB-dependent receptor;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1249194 1250048 . - . ID=gene1337;Name=SFV_RS06710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06710;old_locus_tag=SFV_1205 NC_008258.1 Protein Homology CDS 1249194 1250048 . - 0 ID=cds1312;Parent=gene1337;Dbxref=Genbank:WP_000576842.1;Name=WP_000576842.1;Note=involved in molybdenum transport;gbkey=CDS;product=molybdenum transporter;protein_id=WP_000576842.1;transl_table=11 NC_008258.1 RefSeq gene 1250048 1250857 . - . ID=gene1338;Name=SFV_RS06715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06715;old_locus_tag=SFV_1206 NC_008258.1 Protein Homology CDS 1250048 1250857 . - 0 ID=cds1313;Parent=gene1338;Dbxref=Genbank:WP_000903995.1;Name=WP_000903995.1;gbkey=CDS;product=methyltransferase;protein_id=WP_000903995.1;transl_table=11 NC_008258.1 RefSeq gene 1250867 1251625 . - . ID=gene1339;Name=SFV_RS06720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06720;old_locus_tag=SFV_1207 NC_008258.1 Protein Homology CDS 1250867 1251625 . - 0 ID=cds1314;Parent=gene1339;Dbxref=Genbank:WP_000173320.1;Name=WP_000173320.1;gbkey=CDS;product=iron ABC transporter ATP-binding protein;protein_id=WP_000173320.1;transl_table=11 NC_008258.1 RefSeq gene 1251622 1252602 . - . ID=gene1340;Name=SFV_RS06725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06725;old_locus_tag=SFV_1208 NC_008258.1 Protein Homology CDS 1251622 1252602 . - 0 ID=cds1315;Parent=gene1340;Dbxref=Genbank:WP_001223665.1;Name=WP_001223665.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_001223665.1;transl_table=11 NC_008258.1 RefSeq gene 1252602 1253624 . - . ID=gene1341;Name=SFV_RS06730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06730;old_locus_tag=SFV_1209 NC_008258.1 Protein Homology CDS 1252602 1253624 . - 0 ID=cds1316;Parent=gene1341;Dbxref=Genbank:WP_001123162.1;Name=WP_001123162.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_001123162.1;transl_table=11 NC_008258.1 RefSeq gene 1253943 1254376 . + . ID=gene1342;Name=SFV_RS06735;end_range=1254376,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06735;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1253943 1254376 . + 0 ID=cds1317;Parent=gene1342;end_range=1254376,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1254761 1255128 . + . ID=gene1343;Name=SFV_RS06740;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS06740;pseudo=true NC_008258.1 Protein Homology CDS 1254761 1255128 . + 0 ID=cds1318;Parent=gene1343;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1255207 1256904 . - . ID=gene1344;Name=treA;gbkey=Gene;gene=treA;gene_biotype=protein_coding;locus_tag=SFV_RS06745;old_locus_tag=SFV_1211 NC_008258.1 Protein Homology CDS 1255207 1256904 . - 0 ID=cds1319;Parent=gene1344;Dbxref=Genbank:WP_000841752.1;Name=WP_000841752.1;Note=periplasmic%3B catalyzes the hydrolysis of trehalose to glucose which can then be imported into the cell;gbkey=CDS;gene=treA;product=periplasmic trehalase;protein_id=WP_000841752.1;transl_table=11 NC_008258.1 RefSeq gene 1257224 1258642 . - . ID=gene1345;Name=SFV_RS06750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06750;old_locus_tag=SFV_1212 NC_008258.1 Protein Homology CDS 1257224 1258642 . - 0 ID=cds1320;Parent=gene1345;Dbxref=Genbank:WP_005061971.1;Name=WP_005061971.1;Note=phosphotransferaese subunit%3B phosphorylates dihydroxyacetone along with DhaK/DhaL;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaM;protein_id=WP_005061971.1;transl_table=11 NC_008258.1 RefSeq gene 1258653 1259285 . - . ID=gene1346;Name=SFV_RS06755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06755;old_locus_tag=SFV_1213 NC_008258.1 Protein Homology CDS 1258653 1259285 . - 0 ID=cds1321;Parent=gene1346;Dbxref=Genbank:WP_005105304.1;Name=WP_005105304.1;Note=with DhaK and DhaM catalyzes the phosphorylation of dihydroxyacetone;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaL;protein_id=WP_005105304.1;transl_table=11 NC_008258.1 RefSeq gene 1259296 1260366 . - . ID=gene1347;Name=SFV_RS06760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06760;old_locus_tag=SFV_1214 NC_008258.1 Protein Homology CDS 1259296 1260366 . - 0 ID=cds1322;Parent=gene1347;Dbxref=Genbank:WP_000733721.1;Name=WP_000733721.1;Note=with DhaL and DhaM forms dihydroxyacetone kinase%2C which is responsible for phosphorylating dihydroxyacetone%3B DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase;gbkey=CDS;product=dihydroxyacetone kinase subunit DhaK;protein_id=WP_000733721.1;transl_table=11 NC_008258.1 RefSeq gene 1260594 1262513 . + . ID=gene1348;Name=SFV_RS06765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06765;old_locus_tag=SFV_1215 NC_008258.1 Protein Homology CDS 1260594 1262513 . + 0 ID=cds1323;Parent=gene1348;Dbxref=Genbank:WP_024260263.1;Name=WP_024260263.1;Note=Positively regulates the dhaKLM operon from a sigma-70 promoter;gbkey=CDS;product=transcriptional regulator;protein_id=WP_024260263.1;transl_table=11 NC_008258.1 RefSeq gene 1262613 1265480 . - . ID=gene1349;Name=SFV_RS06770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06770;old_locus_tag=SFV_1216 NC_008258.1 Protein Homology CDS 1262613 1265480 . - 0 ID=cds1324;Parent=gene1349;Dbxref=Genbank:WP_011587214.1;Name=WP_011587214.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011587214.1;transl_table=11 NC_008258.1 RefSeq gene 1265825 1266028 . + . ID=gene1350;Name=SFV_RS06775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06775 NC_008258.1 Protein Homology CDS 1265825 1266028 . + 0 ID=cds1325;Parent=gene1350;Dbxref=Genbank:WP_000280742.1;Name=WP_000280742.1;gbkey=CDS;product=membrane protein;protein_id=WP_000280742.1;transl_table=11 NC_008258.1 RefSeq gene 1266324 1267415 . - . ID=gene1351;Name=ychF;gbkey=Gene;gene=ychF;gene_biotype=protein_coding;locus_tag=SFV_RS06780;old_locus_tag=SFV_1217 NC_008258.1 Protein Homology CDS 1266324 1267415 . - 0 ID=cds1326;Parent=gene1351;Dbxref=Genbank:WP_000505866.1;Name=WP_000505866.1;Note=EngD%3B translation-associated GTPase%3B the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3)%3B fluorescence spectroscopy revealed nucleic acid binding%3B the yeast protein YBR025c interacts with the translation elongation factor eEF1;gbkey=CDS;gene=ychF;product=ribosome-binding ATPase YchF;protein_id=WP_000505866.1;transl_table=11 NC_008258.1 RefSeq gene 1267532 1268116 . - . ID=gene1352;Name=SFV_RS06785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06785;old_locus_tag=SFV_1218 NC_008258.1 Protein Homology CDS 1267532 1268116 . - 0 ID=cds1327;Parent=gene1352;Dbxref=Genbank:WP_000152933.1;Name=WP_000152933.1;gbkey=CDS;product=peptidyl-tRNA hydrolase;protein_id=WP_000152933.1;transl_table=11 NC_008258.1 RefSeq gene 1268394 1268672 . + . ID=gene1353;Name=SFV_RS06790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06790;old_locus_tag=SFV_1219 NC_008258.1 Protein Homology CDS 1268394 1268672 . + 0 ID=cds1328;Parent=gene1353;Dbxref=Genbank:WP_000823874.1;Name=WP_000823874.1;Note=YchH%3B transcription activated by CRP (cyclic AMP receptor protein)%2C a global transcription factor involved in regulation of metabolism in enteric bacteria%3B ychH presents a class II promoter to bind CRP%3B unknown function;gbkey=CDS;product=membrane protein;protein_id=WP_000823874.1;transl_table=11 NC_008258.1 RefSeq gene 1268727 1270379 . - . ID=gene1354;Name=SFV_RS06795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06795;old_locus_tag=SFV_1220 NC_008258.1 Protein Homology CDS 1268727 1270379 . - 0 ID=cds1329;Parent=gene1354;Dbxref=Genbank:WP_001300632.1;Name=WP_001300632.1;Note=role in sulfate transport across the inner membrane%3B member of the SulP family of sulfate transporters%3B seems to mediate transport via sulfate/proton symport;gbkey=CDS;product=transporter;protein_id=WP_001300632.1;transl_table=11 NC_008258.1 RefSeq gene 1270531 1271478 . - . ID=gene1355;Name=SFV_RS06800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06800;old_locus_tag=SFV_1221 NC_008258.1 Protein Homology CDS 1270531 1271478 . - 0 ID=cds1330;Parent=gene1355;Dbxref=Genbank:WP_005049665.1;Name=WP_005049665.1;Note=catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP;gbkey=CDS;product=ribose-phosphate pyrophosphokinase;protein_id=WP_005049665.1;transl_table=11 NC_008258.1 RefSeq gene 1271629 1272480 . - . ID=gene1356;Name=SFV_RS06805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06805;old_locus_tag=SFV_1222 NC_008258.1 Protein Homology CDS 1271629 1272480 . - 0 ID=cds1331;Parent=gene1356;Dbxref=Genbank:WP_001260333.1;Name=WP_001260333.1;gbkey=CDS;product=4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=WP_001260333.1;transl_table=11 NC_008258.1 RefSeq gene 1272480 1273103 . - . ID=gene1357;Name=lolB;gbkey=Gene;gene=lolB;gene_biotype=protein_coding;locus_tag=SFV_RS06810;old_locus_tag=SFV_1223 NC_008258.1 Protein Homology CDS 1272480 1273103 . - 0 ID=cds1332;Parent=gene1357;Dbxref=Genbank:WP_001130692.1;Name=WP_001130692.1;Note=Incorporates lipoproteins in the outer membrane after they are released by the LolA protein;gbkey=CDS;gene=lolB;product=outer membrane lipoprotein LolB;protein_id=WP_001130692.1;transl_table=11 NC_008258.1 RefSeq gene 1273317 1274573 . + . ID=gene1358;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=SFV_RS06815;old_locus_tag=SFV_1224 NC_008258.1 Protein Homology CDS 1273317 1274573 . + 0 ID=cds1333;Parent=gene1358;Dbxref=Genbank:WP_005049668.1;Name=WP_005049668.1;Note=catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH%3B the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid%3B functions in porphyrin (tetrapyrroles) biosynthesis%3B the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins;gbkey=CDS;gene=hemA;product=glutamyl-tRNA reductase;protein_id=WP_005049668.1;transl_table=11 NC_008258.1 RefSeq gene 1274615 1275697 . + . ID=gene1359;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=SFV_RS06820;old_locus_tag=SFV_1225 NC_008258.1 Protein Homology CDS 1274615 1275697 . + 0 ID=cds1334;Parent=gene1359;Dbxref=Genbank:WP_000804726.1;Name=WP_000804726.1;Note=recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1%3B this protein is similar to release factor 2;gbkey=CDS;gene=prfA;product=peptide chain release factor 1;protein_id=WP_000804726.1;transl_table=11 NC_008258.1 RefSeq gene 1275697 1276530 . + . ID=gene1360;Name=SFV_RS06825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06825;old_locus_tag=SFV_1226 NC_008258.1 Protein Homology CDS 1275697 1276530 . + 0 ID=cds1335;Parent=gene1360;Dbxref=Genbank:WP_000456468.1;Name=WP_000456468.1;Note=HemK%3B PrmC%3B transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB;gbkey=CDS;product=N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase;protein_id=WP_000456468.1;transl_table=11 NC_008258.1 RefSeq gene 1276527 1276919 . + . ID=gene1361;Name=SFV_RS06830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06830;old_locus_tag=SFV_1227 NC_008258.1 Protein Homology CDS 1276527 1276919 . + 0 ID=cds1336;Parent=gene1361;Dbxref=Genbank:WP_000200378.1;Name=WP_000200378.1;gbkey=CDS;product=protein sirB2;protein_id=WP_000200378.1;transl_table=11 NC_008258.1 RefSeq gene 1276923 1277732 . + . ID=gene1362;Name=SFV_RS06835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06835;old_locus_tag=SFV_1228 NC_008258.1 Protein Homology CDS 1276923 1277732 . + 0 ID=cds1337;Parent=gene1362;Dbxref=Genbank:WP_001257041.1;Name=WP_001257041.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001257041.1;transl_table=11 NC_008258.1 RefSeq gene 1277768 1278622 . + . ID=gene1363;Name=SFV_RS06840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06840;old_locus_tag=SFV_1229 NC_008258.1 Protein Homology CDS 1277768 1278622 . + 0 ID=cds1338;Parent=gene1363;Dbxref=Genbank:WP_000811065.1;Name=WP_000811065.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis;gbkey=CDS;product=2-dehydro-3-deoxyphosphooctonate aldolase;protein_id=WP_000811065.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1278688 1280411 . + . ID=id186;gbkey=repeat_region NC_008258.1 RefSeq gene 1278771 1278905 . - . ID=gene1364;Name=SFV_RS06845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06845 NC_008258.1 Protein Homology CDS 1278771 1278905 . - 0 ID=cds1339;Parent=gene1364;Dbxref=Genbank:WP_000950182.1;Name=WP_000950182.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000950182.1;transl_table=11 NC_008258.1 RefSeq region 1278982 1280409 . - . ID=id187;gbkey=mobile_element NC_008258.1 RefSeq gene 1278996 1280324 . - . ID=gene1365;Name=SFV_RS06850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06850;old_locus_tag=SFV_1230 NC_008258.1 Protein Homology CDS 1278996 1280324 . - 0 ID=cds1340;Parent=gene1365;Dbxref=Genbank:WP_000547026.1;Name=WP_000547026.1;gbkey=CDS;product=transposase;protein_id=WP_000547026.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1280415 1280586 . + . ID=id188;gbkey=repeat_region NC_008258.1 RefSeq repeat_region 1280661 1281121 . + . ID=id189;gbkey=repeat_region NC_008258.1 RefSeq gene 1280744 1280878 . - . ID=gene1366;Name=SFV_RS06855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06855;old_locus_tag=SFV_1231 NC_008258.1 Protein Homology CDS 1280744 1280878 . - 0 ID=cds1341;Parent=gene1366;Dbxref=Genbank:WP_000950192.1;Name=WP_000950192.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000950192.1;transl_table=11 NC_008258.1 RefSeq gene 1281256 1282356 . - . ID=gene1367;Name=SFV_RS06860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06860;old_locus_tag=SFV_1232 NC_008258.1 Protein Homology CDS 1281256 1282356 . - 0 ID=cds1342;Parent=gene1367;Dbxref=Genbank:WP_000063614.1;Name=WP_000063614.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_000063614.1;transl_table=11 NC_008258.1 RefSeq gene 1282626 1282856 . + . ID=gene1368;Name=chaB;gbkey=Gene;gene=chaB;gene_biotype=protein_coding;locus_tag=SFV_RS06865;old_locus_tag=SFV_1233 NC_008258.1 Protein Homology CDS 1282626 1282856 . + 0 ID=cds1343;Parent=gene1368;Dbxref=Genbank:WP_001146444.1;Name=WP_001146444.1;Note=in Escherichia coli this protein putatively regulates the sodium/proton (also pH-independent calcium/proton) antiporter chaA%3B has weak affinity for calcium and magnesium ions;gbkey=CDS;gene=chaB;product=cation transport regulator ChaB;protein_id=WP_001146444.1;transl_table=11 NC_008258.1 RefSeq gene 1283014 1283709 . + . ID=gene1369;Name=SFV_RS06870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06870;old_locus_tag=SFV_1234 NC_008258.1 Protein Homology CDS 1283014 1283709 . + 0 ID=cds1344;Parent=gene1369;Dbxref=Genbank:WP_001295621.1;Name=WP_001295621.1;gbkey=CDS;product=glutathione-specific gamma-glutamylcyclotransferase;protein_id=WP_001295621.1;transl_table=11 NC_008258.1 RefSeq gene 1283753 1284106 . - . ID=gene1370;Name=SFV_RS06875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06875;old_locus_tag=SFV_1235 NC_008258.1 Protein Homology CDS 1283753 1284106 . - 0 ID=cds1345;Parent=gene1370;Dbxref=Genbank:WP_001169669.1;Name=WP_001169669.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001169669.1;transl_table=11 NC_008258.1 RefSeq gene 1284431 1285684 . + . ID=gene1371;Name=SFV_RS06880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06880;old_locus_tag=SFV_1236 NC_008258.1 Protein Homology CDS 1284431 1285684 . + 0 ID=cds1346;Parent=gene1371;Dbxref=Genbank:WP_005062046.1;Name=WP_005062046.1;gbkey=CDS;product=invasin;protein_id=WP_005062046.1;transl_table=11 NC_008258.1 RefSeq gene 1285685 1286335 . - . ID=gene1372;Name=SFV_RS06885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06885;old_locus_tag=SFV_1237 NC_008258.1 Protein Homology CDS 1285685 1286335 . - 0 ID=cds1347;Parent=gene1372;Dbxref=Genbank:WP_000070491.1;Name=WP_000070491.1;Note=two-component response regulator NarL%3B phosphorylated by NarQ%3B activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000070491.1;transl_table=11 NC_008258.1 RefSeq gene 1286328 1288124 . - . ID=gene1373;Name=SFV_RS06890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06890;old_locus_tag=SFV_1238 NC_008258.1 Protein Homology CDS 1286328 1288124 . - 0 ID=cds1348;Parent=gene1373;Dbxref=Genbank:WP_000918073.1;Name=WP_000918073.1;gbkey=CDS;product=nitrate/nitrite two-component system sensor histidine kinase;protein_id=WP_000918073.1;transl_table=11 NC_008258.1 RefSeq gene 1288150 1288368 . + . ID=gene1374;Name=SFV_RS06895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06895 NC_008258.1 Protein Homology CDS 1288150 1288368 . + 0 ID=cds1349;Parent=gene1374;Dbxref=Genbank:WP_000069487.1;Name=WP_000069487.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000069487.1;transl_table=11 NC_008258.1 RefSeq gene 1288463 1289854 . + . ID=gene1375;Name=SFV_RS06900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06900;old_locus_tag=SFV_1239 NC_008258.1 Protein Homology CDS 1288463 1289854 . + 0 ID=cds1350;Parent=gene1375;Dbxref=Genbank:WP_000019858.1;Name=WP_000019858.1;Note=involved in the transport of nitrate and nitrite;gbkey=CDS;product=nitrate transporter;protein_id=WP_000019858.1;transl_table=11 NC_008258.1 RefSeq gene 1290247 1293990 . + . ID=gene1376;Name=narZ;gbkey=Gene;gene=narZ;gene_biotype=protein_coding;locus_tag=SFV_RS06905;old_locus_tag=SFV_1240 NC_008258.1 Protein Homology CDS 1290247 1293990 . + 0 ID=cds1351;Parent=gene1376;Dbxref=Genbank:WP_000032947.1;Name=WP_000032947.1;Note=with NarYV catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli%3B expression of nitrate reductase Z is not dependent on nitrate levels;gbkey=CDS;gene=narZ;product=nitrate reductase A subunit alpha;protein_id=WP_000032947.1;transl_table=11 NC_008258.1 RefSeq gene 1293987 1295525 . + . ID=gene1377;Name=narH;gbkey=Gene;gene=narH;gene_biotype=protein_coding;locus_tag=SFV_RS06910;old_locus_tag=SFV_1241 NC_008258.1 Protein Homology CDS 1293987 1295525 . + 0 ID=cds1352;Parent=gene1377;Dbxref=Genbank:WP_000702650.1;Name=WP_000702650.1;Note=with NarGJI catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;gbkey=CDS;gene=narH;product=nitrate reductase subunit beta;protein_id=WP_000702650.1;transl_table=11 NC_008258.1 RefSeq gene 1295522 1296232 . + . ID=gene1378;Name=SFV_RS06915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06915;old_locus_tag=SFV_1242 NC_008258.1 Protein Homology CDS 1295522 1296232 . + 0 ID=cds1353;Parent=gene1378;Dbxref=Genbank:WP_000571704.1;Name=WP_000571704.1;Note=delta subunit of nitrate reductase 1%3B chaperone for the insertion of the molybdenum cofactor and assembly of nitrate reductase 1;gbkey=CDS;product=nitrate reductase molybdenum cofactor assembly chaperone NarJ;protein_id=WP_000571704.1;transl_table=11 NC_008258.1 RefSeq gene 1296232 1296909 . + . ID=gene1379;Name=narI;gbkey=Gene;gene=narI;gene_biotype=protein_coding;locus_tag=SFV_RS06920;old_locus_tag=SFV_1243 NC_008258.1 Protein Homology CDS 1296232 1296909 . + 0 ID=cds1354;Parent=gene1379;Dbxref=Genbank:WP_001160114.1;Name=WP_001160114.1;Note=with NarGJH catalyzes the reduction of nitrate%3B the gamma subunit localizes NarGHI to the membrane%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;gbkey=CDS;gene=narI;product=respiratory nitrate reductase subunit gamma;protein_id=WP_001160114.1;transl_table=11 NC_008258.1 RefSeq gene 1297092 1297211 . + . ID=gene1380;Name=SFV_RS24450;end_range=1297211,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24450;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1297092 1297211 . + 0 ID=cds1355;Parent=gene1380;end_range=1297211,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1297271 1297355 . - . ID=gene1381;Name=SFV_RS06925;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS06925;old_locus_tag=SFV_1244 NC_008258.1 tRNAscan-SE tRNA 1297271 1297355 . - . ID=rna25;Parent=gene1381;anticodon=(pos:complement(1297319..1297321));gbkey=tRNA;product=tRNA-Tyr NC_008258.1 tRNAscan-SE exon 1297271 1297355 . - . ID=id190;Parent=rna25;anticodon=(pos:complement(1297319..1297321));gbkey=tRNA;product=tRNA-Tyr NC_008258.1 RefSeq gene 1297515 1298357 . - . ID=gene1382;Name=SFV_RS06930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06930;old_locus_tag=SFV_1245 NC_008258.1 Protein Homology CDS 1297515 1298357 . - 0 ID=cds1356;Parent=gene1382;Dbxref=Genbank:WP_000555849.1;Name=WP_000555849.1;gbkey=CDS;product=formyltetrahydrofolate deformylase;protein_id=WP_000555849.1;transl_table=11 NC_008258.1 RefSeq gene 1298407 1298865 . - . ID=gene1383;Name=SFV_RS06935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06935;old_locus_tag=SFV_1246 NC_008258.1 Protein Homology CDS 1298407 1298865 . - 0 ID=cds1357;Parent=gene1383;Dbxref=Genbank:WP_005105319.1;Name=WP_005105319.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105319.1;transl_table=11 NC_008258.1 RefSeq gene 1298978 1299883 . + . ID=gene1384;Name=SFV_RS06940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06940;old_locus_tag=SFV_1247 NC_008258.1 Protein Homology CDS 1298978 1299883 . + 0 ID=cds1358;Parent=gene1384;Dbxref=Genbank:WP_001295622.1;Name=WP_001295622.1;gbkey=CDS;product=NTE family protein RssA;protein_id=WP_001295622.1;transl_table=11 NC_008258.1 RefSeq gene 1299975 1300988 . + . ID=gene1385;Name=SFV_RS06945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06945;old_locus_tag=SFV_1248 NC_008258.1 Protein Homology CDS 1299975 1300988 . + 0 ID=cds1359;Parent=gene1385;Dbxref=Genbank:WP_000193447.1;Name=WP_000193447.1;gbkey=CDS;product=regulator of RpoS;protein_id=WP_000193447.1;transl_table=11 NC_008258.1 RefSeq gene 1301190 1302098 . + . ID=gene1386;Name=SFV_RS06950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06950;old_locus_tag=SFV_1249 NC_008258.1 Protein Homology CDS 1301190 1302098 . + 0 ID=cds1360;Parent=gene1386;Dbxref=Genbank:WP_000718995.1;Name=WP_000718995.1;Note=together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase%2C an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate%3B regulates cellular levels of UDP-glucose;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_000718995.1;transl_table=11 NC_008258.1 RefSeq gene 1302242 1302655 . - . ID=gene1387;Name=SFV_RS06955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06955;old_locus_tag=SFV_1250 NC_008258.1 Protein Homology CDS 1302242 1302655 . - 0 ID=cds1361;Parent=gene1387;Dbxref=Genbank:WP_001287378.1;Name=WP_001287378.1;gbkey=CDS;product=DNA-binding protein H-NS;protein_id=WP_001287378.1;transl_table=11 NC_008258.1 RefSeq gene 1303260 1303877 . + . ID=gene1388;Name=SFV_RS06960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06960;old_locus_tag=SFV_1251 NC_008258.1 Protein Homology CDS 1303260 1303877 . + 0 ID=cds1362;Parent=gene1388;Dbxref=Genbank:WP_000068079.1;Name=WP_000068079.1;Note=catalyzes the formation of thymidine 5'-phosphate from thymidine;gbkey=CDS;product=thymidine kinase;protein_id=WP_000068079.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1304141 1305583 . + . ID=id191;gbkey=repeat_region NC_008258.1 RefSeq region 1304149 1305576 . - . ID=id192;gbkey=mobile_element NC_008258.1 RefSeq gene 1304163 1305491 . - . ID=gene1389;Name=SFV_RS06965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06965;old_locus_tag=SFV_1252 NC_008258.1 Protein Homology CDS 1304163 1305491 . - 0 ID=cds1363;Parent=gene1389;Dbxref=Genbank:WP_000547025.1;Name=WP_000547025.1;gbkey=CDS;product=transposase;protein_id=WP_000547025.1;transl_table=11 NC_008258.1 RefSeq gene 1305617 1308292 . - . ID=gene1390;Name=SFV_RS06970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06970;old_locus_tag=SFV_1253 NC_008258.1 Protein Homology CDS 1305617 1308292 . - 0 ID=cds1364;Parent=gene1390;Dbxref=Genbank:WP_000301647.1;Name=WP_000301647.1;gbkey=CDS;product=acetaldehyde dehydrogenase;protein_id=WP_000301647.1;transl_table=11 NC_008258.1 RefSeq gene 1308769 1309416 . + . ID=gene1391;Name=SFV_RS06975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06975;old_locus_tag=SFV_1254 NC_008258.1 Protein Homology CDS 1308769 1309416 . + 0 ID=cds1365;Parent=gene1391;Dbxref=Genbank:WP_000616773.1;Name=WP_000616773.1;gbkey=CDS;product=membrane protein;protein_id=WP_000616773.1;transl_table=11 NC_008258.1 RefSeq gene 1310154 1311785 . + . ID=gene1392;Name=SFV_RS06980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06980;old_locus_tag=SFV_1255 NC_008258.1 Protein Homology CDS 1310154 1311785 . + 0 ID=cds1366;Parent=gene1392;Dbxref=Genbank:WP_005049680.1;Name=WP_005049680.1;Note=is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_005049680.1;transl_table=11 NC_008258.1 RefSeq gene 1311871 1312791 . + . ID=gene1393;Name=oppB;gbkey=Gene;gene=oppB;gene_biotype=protein_coding;locus_tag=SFV_RS06985;old_locus_tag=SFV_1256 NC_008258.1 Protein Homology CDS 1311871 1312791 . + 0 ID=cds1367;Parent=gene1393;Dbxref=Genbank:WP_000911112.1;Name=WP_000911112.1;gbkey=CDS;gene=oppB;product=peptide ABC transporter permease;protein_id=WP_000911112.1;transl_table=11 NC_008258.1 RefSeq gene 1312806 1313714 . + . ID=gene1394;Name=SFV_RS06990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS06990;old_locus_tag=SFV_1257 NC_008258.1 Protein Homology CDS 1312806 1313714 . + 0 ID=cds1368;Parent=gene1394;Dbxref=Genbank:WP_000979659.1;Name=WP_000979659.1;Note=with OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000979659.1;transl_table=11 NC_008258.1 RefSeq gene 1313726 1314739 . + . ID=gene1395;Name=oppD;gbkey=Gene;gene=oppD;gene_biotype=protein_coding;locus_tag=SFV_RS06995;old_locus_tag=SFV_1258 NC_008258.1 Protein Homology CDS 1313726 1314739 . + 0 ID=cds1369;Parent=gene1395;Dbxref=Genbank:WP_000110954.1;Name=WP_000110954.1;gbkey=CDS;gene=oppD;product=peptide ABC transporter ATP-binding protein;protein_id=WP_000110954.1;transl_table=11 NC_008258.1 RefSeq gene 1314736 1315740 . + . ID=gene1396;Name=SFV_RS07000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07000;old_locus_tag=SFV_1259 NC_008258.1 Protein Homology CDS 1314736 1315740 . + 0 ID=cds1370;Parent=gene1396;Dbxref=Genbank:WP_000994905.1;Name=WP_000994905.1;Note=with OppABCD is involved in the transport of oligopeptides%3B OppF and OppD are ATP-binding proteins;gbkey=CDS;product=oligopeptide transport ATP-binding protein OppF;protein_id=WP_000994905.1;transl_table=11 NC_008258.1 RefSeq gene 1315793 1316122 . - . ID=gene1397;Name=SFV_RS07005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07005;old_locus_tag=SFV_1260 NC_008258.1 Protein Homology CDS 1315793 1316122 . - 0 ID=cds1371;Parent=gene1397;Dbxref=Genbank:WP_000366966.1;Name=WP_000366966.1;Note=highly acidic protein%3B the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi)%3B binds heat-unstable protein (HU-alpha) which is a histone-like protein;gbkey=CDS;product=dsDNA-mimic protein;protein_id=WP_000366966.1;transl_table=11 NC_008258.1 RefSeq gene 1316157 1317617 . - . ID=gene1398;Name=cls;gbkey=Gene;gene=cls;gene_biotype=protein_coding;locus_tag=SFV_RS07010;old_locus_tag=SFV_1261 NC_008258.1 Protein Homology CDS 1316157 1317617 . - 0 ID=cds1372;Parent=gene1398;Dbxref=Genbank:WP_000214515.1;Name=WP_000214515.1;Note=catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol);gbkey=CDS;gene=cls;product=cardiolipin synthase;protein_id=WP_000214515.1;transl_table=11 NC_008258.1 RefSeq gene 1317649 1317933 . + . ID=gene1399;Name=SFV_RS07015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07015 NC_008258.1 Protein Homology CDS 1317649 1317933 . + 0 ID=cds1373;Parent=gene1399;Dbxref=Genbank:WP_001303937.1;Name=WP_001303937.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303937.1;transl_table=11 NC_008258.1 RefSeq gene 1317988 1319241 . - . ID=gene1400;Name=SFV_RS07020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07020;old_locus_tag=SFV_1262 NC_008258.1 Protein Homology CDS 1317988 1319241 . - 0 ID=cds1374;Parent=gene1400;Dbxref=Genbank:WP_005049683.1;Name=WP_005049683.1;gbkey=CDS;product=voltage-gated potassium channel;protein_id=WP_005049683.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1319536 1320807 . + . ID=id193;gbkey=repeat_region NC_008258.1 RefSeq region 1319540 1320803 . + . ID=id194;gbkey=mobile_element NC_008258.1 RefSeq gene 1319604 1319906 . + . ID=gene1401;Name=SFV_RS07025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07025;old_locus_tag=SFV_1263 NC_008258.1 Protein Homology CDS 1319604 1319906 . + 0 ID=cds1375;Parent=gene1401;Dbxref=Genbank:WP_000088261.1;Name=WP_000088261.1;gbkey=CDS;product=transposase;protein_id=WP_000088261.1;transl_table=11 NC_008258.1 RefSeq gene 1320047 1320760 . + . ID=gene1402;Name=SFV_RS07030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07030;old_locus_tag=SFV_1264 NC_008258.1 Protein Homology CDS 1320047 1320760 . + 0 ID=cds1376;Parent=gene1402;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1320808 1321104 . - . ID=gene1403;Name=SFV_RS07035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07035;old_locus_tag=SFV_1265 NC_008258.1 Protein Homology CDS 1320808 1321104 . - 0 ID=cds1377;Parent=gene1403;Dbxref=Genbank:WP_000967595.1;Name=WP_000967595.1;Note=unknown function%3B YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase%2C but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity;gbkey=CDS;product=hypothetical protein;protein_id=WP_000967595.1;transl_table=11 NC_008258.1 RefSeq gene 1321328 1322059 . + . ID=gene1404;Name=SFV_RS07040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07040;old_locus_tag=SFV_1266 NC_008258.1 Protein Homology CDS 1321328 1322059 . + 0 ID=cds1378;Parent=gene1404;Dbxref=Genbank:WP_024260264.1;Name=WP_024260264.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B transduces proton motive force of the cytoplasmic membrane to outer membrane transporters%3B involved in the transport of ron-siderophore complexes%2C vitamin B12 and colicins;gbkey=CDS;product=energy transducer TonB;protein_id=WP_024260264.1;transl_table=11 NC_008258.1 RefSeq gene 1322099 1322497 . - . ID=gene1405;Name=SFV_RS07045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07045;old_locus_tag=SFV_1267 NC_008258.1 Protein Homology CDS 1322099 1322497 . - 0 ID=cds1379;Parent=gene1405;Dbxref=Genbank:WP_000108160.1;Name=WP_000108160.1;gbkey=CDS;product=acyl-CoA thioester hydrolase YciA;protein_id=WP_000108160.1;transl_table=11 NC_008258.1 RefSeq gene 1322602 1323141 . - . ID=gene1406;Name=SFV_RS07050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07050;old_locus_tag=SFV_1268 NC_008258.1 Protein Homology CDS 1322602 1323141 . - 0 ID=cds1380;Parent=gene1406;Dbxref=Genbank:WP_000808673.1;Name=WP_000808673.1;Note=Involved in cell division%3B probably involved in intracellular septation;gbkey=CDS;product=intracellular septation protein A;protein_id=WP_000808673.1;transl_table=11 NC_008258.1 RefSeq gene 1323171 1323914 . - . ID=gene1407;Name=SFV_RS07055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07055;old_locus_tag=SFV_1269 NC_008258.1 Protein Homology CDS 1323171 1323914 . - 0 ID=cds1381;Parent=gene1407;Dbxref=Genbank:WP_000028536.1;Name=WP_000028536.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000028536.1;transl_table=11 NC_008258.1 RefSeq gene 1324271 1324909 . + . ID=gene1408;Name=SFV_RS07060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07060;old_locus_tag=SFV_1270 NC_008258.1 Protein Homology CDS 1324271 1324909 . + 0 ID=cds1382;Parent=gene1408;Dbxref=Genbank:WP_000737226.1;Name=WP_000737226.1;Note=receptor for colicin S4;gbkey=CDS;product=outer membrane protein W;protein_id=WP_000737226.1;transl_table=11 NC_008258.1 RefSeq gene 1324969 1325475 . - . ID=gene1409;Name=SFV_RS07065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07065;old_locus_tag=SFV_1271 NC_008258.1 Protein Homology CDS 1324969 1325475 . - 0 ID=cds1383;Parent=gene1409;Dbxref=Genbank:WP_001079496.1;Name=WP_001079496.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001079496.1;transl_table=11 NC_008258.1 RefSeq gene 1325521 1326021 . - . ID=gene1410;Name=SFV_RS07070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07070;old_locus_tag=SFV_1272 NC_008258.1 Protein Homology CDS 1325521 1326021 . - 0 ID=cds1384;Parent=gene1410;Dbxref=Genbank:WP_001056505.1;Name=WP_001056505.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001056505.1;transl_table=11 NC_008258.1 RefSeq gene 1326107 1326286 . - . ID=gene1411;Name=SFV_RS07075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07075 NC_008258.1 Protein Homology CDS 1326107 1326286 . - 0 ID=cds1385;Parent=gene1411;Dbxref=Genbank:WP_000807651.1;Name=WP_000807651.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000807651.1;transl_table=11 NC_008258.1 RefSeq gene 1326667 1327473 . - . ID=gene1412;Name=SFV_RS07080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07080;old_locus_tag=SFV_1274 NC_008258.1 Protein Homology CDS 1326667 1327473 . - 0 ID=cds1386;Parent=gene1412;Dbxref=Genbank:WP_000443061.1;Name=WP_000443061.1;gbkey=CDS;product=tryptophan synthase subunit alpha;protein_id=WP_000443061.1;transl_table=11 NC_008258.1 RefSeq gene 1327473 1328666 . - . ID=gene1413;Name=SFV_RS07085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07085;old_locus_tag=SFV_1275 NC_008258.1 Protein Homology CDS 1327473 1328666 . - 0 ID=cds1387;Parent=gene1413;Dbxref=Genbank:WP_000209520.1;Name=WP_000209520.1;Note=catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate;gbkey=CDS;product=tryptophan synthase subunit beta;protein_id=WP_000209520.1;transl_table=11 NC_008258.1 RefSeq gene 1328678 1330036 . - . ID=gene1414;Name=SFV_RS07090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07090;old_locus_tag=SFV_1276 NC_008258.1 Protein Homology CDS 1328678 1330036 . - 0 ID=cds1388;Parent=gene1414;Dbxref=Genbank:WP_005049692.1;Name=WP_005049692.1;Note=monomeric bifunctional protein%3B functions in tryptophan biosynthesis pathway%3B phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate;gbkey=CDS;product=phosphoribosylanthranilate isomerase;protein_id=WP_005049692.1;transl_table=11 NC_008258.1 RefSeq gene 1330040 1331635 . - . ID=gene1415;Name=SFV_RS07095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07095;old_locus_tag=SFV_1277 NC_008258.1 Protein Homology CDS 1330040 1331635 . - 0 ID=cds1389;Parent=gene1415;Dbxref=Genbank:WP_000763499.1;Name=WP_000763499.1;Note=bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase%3B TrpD%3B forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine%3B also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate%3B functions in tryptophan biosynthesis;gbkey=CDS;product=anthranilate phosphoribosyltransferase;protein_id=WP_000763499.1;transl_table=11 NC_008258.1 RefSeq gene 1331635 1333197 . - . ID=gene1416;Name=SFV_RS07100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07100;old_locus_tag=SFV_1278 NC_008258.1 Protein Homology CDS 1331635 1333197 . - 0 ID=cds1390;Parent=gene1416;Dbxref=Genbank:WP_001194617.1;Name=WP_001194617.1;gbkey=CDS;product=anthranilate synthase component I;protein_id=WP_001194617.1;transl_table=11 NC_008258.1 RefSeq gene 1333471 1334352 . + . ID=gene1417;Name=SFV_RS07105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07105;old_locus_tag=SFV_1279 NC_008258.1 Protein Homology CDS 1333471 1334352 . + 0 ID=cds1391;Parent=gene1417;Dbxref=Genbank:WP_001285681.1;Name=WP_001285681.1;gbkey=CDS;product=S-adenosylmethionine tRNA ribosyltransferase;protein_id=WP_001285681.1;transl_table=11 NC_008258.1 RefSeq gene 1334349 1334969 . + . ID=gene1418;Name=SFV_RS07110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07110;old_locus_tag=SFV_1280 NC_008258.1 Protein Homology CDS 1334349 1334969 . + 0 ID=cds1392;Parent=gene1418;Dbxref=Genbank:WP_001295575.1;Name=WP_001295575.1;gbkey=CDS;product=RNA binding protein;protein_id=WP_001295575.1;transl_table=11 NC_008258.1 RefSeq gene 1335070 1335942 . + . ID=gene1419;Name=SFV_RS07115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07115;old_locus_tag=SFV_1281 NC_008258.1 Protein Homology CDS 1335070 1335942 . + 0 ID=cds1393;Parent=gene1419;Dbxref=Genbank:WP_001291219.1;Name=WP_001291219.1;Note=catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase B;protein_id=WP_001291219.1;transl_table=11 NC_008258.1 RefSeq gene 1335982 1336572 . - . ID=gene1420;Name=SFV_RS07120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07120;old_locus_tag=SFV_1282 NC_008258.1 Protein Homology CDS 1335982 1336572 . - 0 ID=cds1394;Parent=gene1420;Dbxref=Genbank:WP_001278905.1;Name=WP_001278905.1;Note=catalyzes the formation of adenosylcobalamide from cobinamide and the formation of coenzyme B12 from cob(I)alamin;gbkey=CDS;product=cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase;protein_id=WP_001278905.1;transl_table=11 NC_008258.1 RefSeq gene 1336569 1337327 . - . ID=gene1421;Name=SFV_RS07125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07125;old_locus_tag=SFV_1283 NC_008258.1 Protein Homology CDS 1336569 1337327 . - 0 ID=cds1395;Parent=gene1421;Dbxref=Genbank:WP_000559293.1;Name=WP_000559293.1;gbkey=CDS;product=oxoacyl-ACP reductase;protein_id=WP_000559293.1;transl_table=11 NC_008258.1 RefSeq gene 1337371 1337535 . - . ID=gene1422;Name=SFV_RS07130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07130 NC_008258.1 Protein Homology CDS 1337371 1337535 . - 0 ID=cds1396;Parent=gene1422;Dbxref=Genbank:WP_001303289.1;Name=WP_001303289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303289.1;transl_table=11 NC_008258.1 RefSeq gene 1337547 1338596 . + . ID=gene1423;Name=SFV_RS07135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07135;old_locus_tag=SFV_1284 NC_008258.1 Protein Homology CDS 1337547 1338596 . + 0 ID=cds1397;Parent=gene1423;Dbxref=Genbank:WP_000422045.1;Name=WP_000422045.1;Note=multicopy suppressor of htrA(degP);gbkey=CDS;product=protease;protein_id=WP_000422045.1;transl_table=11 NC_008258.1 RefSeq gene 1338632 1338883 . - . ID=gene1424;Name=SFV_RS07140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07140 NC_008258.1 Protein Homology CDS 1338632 1338883 . - 0 ID=cds1398;Parent=gene1424;Dbxref=Genbank:WP_001031530.1;Name=WP_001031530.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001031530.1;transl_table=11 NC_008258.1 RefSeq gene 1338988 1339140 . + . ID=gene1425;Name=SFV_RS07145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07145 NC_008258.1 Protein Homology CDS 1338988 1339140 . + 0 ID=cds1399;Parent=gene1425;Dbxref=Genbank:WP_014640285.1;Name=WP_014640285.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014640285.1;transl_table=11 NC_008258.1 RefSeq gene 1339263 1341860 . + . ID=gene1426;Name=SFV_RS07150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07150;old_locus_tag=SFV_1285 NC_008258.1 Protein Homology CDS 1339263 1341860 . + 0 ID=cds1400;Parent=gene1426;Dbxref=Genbank:WP_005049701.1;Name=WP_005049701.1;Note=catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining%2C maintains net negative superhelicity;gbkey=CDS;product=DNA topoisomerase I;protein_id=WP_005049701.1;transl_table=11 NC_008258.1 RefSeq gene 1342070 1343044 . + . ID=gene1427;Name=cysB;gbkey=Gene;gene=cysB;gene_biotype=protein_coding;locus_tag=SFV_RS07155;old_locus_tag=SFV_1286 NC_008258.1 Protein Homology CDS 1342070 1343044 . + 0 ID=cds1401;Parent=gene1427;Dbxref=Genbank:WP_000776246.1;Name=WP_000776246.1;Note=LysR-type transcriptional regulator%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon%3B autoregulates expression%3B crystal structure of Klebsiella aerogenes showed tetramer formation;gbkey=CDS;gene=cysB;product=CysB family transcriptional regulator;protein_id=WP_000776246.1;transl_table=11 NC_008258.1 RefSeq gene 1343375 1343503 . + . ID=gene1428;Name=SFV_RS07160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07160 NC_008258.1 Protein Homology CDS 1343375 1343503 . + 0 ID=cds1402;Parent=gene1428;Dbxref=Genbank:WP_001295577.1;Name=WP_001295577.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295577.1;transl_table=11 NC_008258.1 RefSeq gene 1343507 1343674 . + . ID=gene1429;Name=SFV_RS07165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07165;old_locus_tag=SFV_1288 NC_008258.1 Protein Homology CDS 1343507 1343674 . + 0 ID=cds1403;Parent=gene1429;Dbxref=Genbank:WP_000233043.1;Name=WP_000233043.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000233043.1;transl_table=11 NC_008258.1 RefSeq gene 1343748 1343873 . - . ID=gene1430;Name=SFV_RS07170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07170 NC_008258.1 Protein Homology CDS 1343748 1343873 . - 0 ID=cds1404;Parent=gene1430;Dbxref=Genbank:WP_000616081.1;Name=WP_000616081.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000616081.1;transl_table=11 NC_008258.1 RefSeq gene 1344047 1346722 . + . ID=gene1431;Name=SFV_RS07180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07180;old_locus_tag=SFV_1289 NC_008258.1 Protein Homology CDS 1344047 1346722 . + 0 ID=cds1405;Parent=gene1431;Dbxref=Genbank:WP_000099512.1;Name=WP_000099512.1;Note=Catalyzes the conversion of citrate to isocitrate;gbkey=CDS;product=aconitate hydratase;protein_id=WP_000099512.1;transl_table=11 NC_008258.1 RefSeq gene 1346786 1347376 . - . ID=gene1432;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=SFV_RS07185;old_locus_tag=SFV_1290 NC_008258.1 Protein Homology CDS 1346786 1347376 . - 0 ID=cds1406;Parent=gene1432;Dbxref=Genbank:WP_001176295.1;Name=WP_001176295.1;Note=catalyzes the conversion of GTP to formate and 2%2C5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate;gbkey=CDS;gene=ribA;product=GTP cyclohydrolase-2;protein_id=WP_001176295.1;transl_table=11 NC_008258.1 RefSeq gene 1347546 1348310 . + . ID=gene1433;Name=SFV_RS07190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07190;old_locus_tag=SFV_1291 NC_008258.1 Protein Homology CDS 1347546 1348310 . + 0 ID=cds1407;Parent=gene1433;Dbxref=Genbank:WP_001256538.1;Name=WP_001256538.1;gbkey=CDS;product=phosphatidylglycerophosphatase B;protein_id=WP_001256538.1;transl_table=11 NC_008258.1 RefSeq gene 1348459 1348767 . + . ID=gene1434;Name=SFV_RS07195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07195;old_locus_tag=SFV_1292 NC_008258.1 Protein Homology CDS 1348459 1348767 . + 0 ID=cds1408;Parent=gene1434;Dbxref=Genbank:WP_000876286.1;Name=WP_000876286.1;gbkey=CDS;product=LPS assembly protein A;protein_id=WP_000876286.1;transl_table=11 NC_008258.1 RefSeq gene 1348774 1349943 . + . ID=gene1435;Name=SFV_RS07200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07200;old_locus_tag=SFV_1293 NC_008258.1 Protein Homology CDS 1348774 1349943 . + 0 ID=cds1409;Parent=gene1435;Dbxref=Genbank:WP_000891355.1;Name=WP_000891355.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000891355.1;transl_table=11 NC_008258.1 RefSeq gene 1350136 1350873 . + . ID=gene1436;Name=SFV_RS07205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07205;old_locus_tag=SFV_1294 NC_008258.1 Protein Homology CDS 1350136 1350873 . + 0 ID=cds1410;Parent=gene1436;Dbxref=Genbank:WP_000176259.1;Name=WP_000176259.1;gbkey=CDS;product=orotidine 5'-phosphate decarboxylase;protein_id=WP_000176259.1;transl_table=11 NC_008258.1 RefSeq gene 1350873 1351199 . + . ID=gene1437;Name=SFV_RS07210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07210;old_locus_tag=SFV_1295 NC_008258.1 Protein Homology CDS 1350873 1351199 . + 0 ID=cds1411;Parent=gene1437;Dbxref=Genbank:WP_005049711.1;Name=WP_005049711.1;Note=involved in start site selection during the initiation of translation;gbkey=CDS;product=translation initiation factor Sui1;protein_id=WP_005049711.1;transl_table=11 NC_008258.1 RefSeq gene 1351325 1351543 . - . ID=gene1438;Name=SFV_RS07215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07215;old_locus_tag=SFV_1296 NC_008258.1 Protein Homology CDS 1351325 1351543 . - 0 ID=cds1412;Parent=gene1438;Dbxref=Genbank:WP_000498253.1;Name=WP_000498253.1;gbkey=CDS;product=osmotically-inducible lipoprotein B;protein_id=WP_000498253.1;transl_table=11 NC_008258.1 RefSeq gene 1351812 1352561 . - . ID=gene1439;Name=SFV_RS07220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07220;old_locus_tag=SFV_1297 NC_008258.1 Protein Homology CDS 1351812 1352561 . - 0 ID=cds1413;Parent=gene1439;Dbxref=Genbank:WP_001088621.1;Name=WP_001088621.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_001088621.1;transl_table=11 NC_008258.1 RefSeq gene 1352651 1352824 . - . ID=gene1440;Name=SFV_RS07225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07225;old_locus_tag=SFV_1298 NC_008258.1 Protein Homology CDS 1352651 1352824 . - 0 ID=cds1414;Parent=gene1440;Dbxref=Genbank:WP_001288369.1;Name=WP_001288369.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001288369.1;transl_table=11 NC_008258.1 RefSeq gene 1352972 1354946 . - . ID=gene1441;Name=SFV_RS24455;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24455;old_locus_tag=SFV_1299;pseudo=true NC_008258.1 Protein Homology CDS 1352972 1354946 . - 0 ID=cds1415;Parent=gene1441;Note=c-di-GMP phosphodiesterase%3B probably degrades signalling molecule c-di-GMP;exception=annotated by transcript or proteomic data;gbkey=CDS;product=RNase II stability modulator;pseudo=true;transl_except=(pos:complement(1354485..1354487)%2Caa:Other),(pos:complement(1353662..1353664)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1355000 1355102 . + . ID=gene1442;Name=SFV_RS07245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07245;pseudo=true NC_008258.1 Protein Homology CDS 1355000 1355102 . + 0 ID=cds1416;Parent=gene1442;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1355180 1357114 . - . ID=gene1443;Name=SFV_RS07250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07250;old_locus_tag=SFV_1300 NC_008258.1 Protein Homology CDS 1355180 1357114 . - 0 ID=cds1417;Parent=gene1443;Dbxref=Genbank:WP_000485029.1;Name=WP_000485029.1;Note=Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction;gbkey=CDS;product=exoribonuclease 2;protein_id=WP_000485029.1;transl_table=11 NC_008258.1 RefSeq gene 1357182 1358309 . - . ID=gene1444;Name=SFV_RS07255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07255;old_locus_tag=SFV_1301 NC_008258.1 Protein Homology CDS 1357182 1358309 . - 0 ID=cds1418;Parent=gene1444;Dbxref=Genbank:WP_005049719.1;Name=WP_005049719.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_005049719.1;transl_table=11 NC_008258.1 RefSeq gene 1358453 1359241 . - . ID=gene1445;Name=SFV_RS07260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07260;old_locus_tag=SFV_1302 NC_008258.1 Protein Homology CDS 1358453 1359241 . - 0 ID=cds1419;Parent=gene1445;Dbxref=Genbank:WP_000506490.1;Name=WP_000506490.1;Note=Catalyzes a key regulatory step in fatty acid biosynthesis;gbkey=CDS;product=enoyl-ACP reductase [NADH];protein_id=WP_000506490.1;transl_table=11 NC_008258.1 RefSeq gene 1359410 1359521 . - . ID=gene1446;Name=SFV_RS07265;end_range=1359521,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07265;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1359410 1359521 . - 2 ID=cds1420;Parent=gene1446;end_range=1359521,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1359609 1359959 . - . ID=gene1447;Name=SFV_RS07270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07270;old_locus_tag=SFV_1303 NC_008258.1 Protein Homology CDS 1359609 1359959 . - 0 ID=cds1421;Parent=gene1447;Dbxref=Genbank:WP_001331106.1;Name=WP_001331106.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001331106.1;transl_table=11 NC_008258.1 RefSeq gene 1360030 1360836 . - . ID=gene1448;Name=SFV_RS07275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07275;old_locus_tag=SFV_1304 NC_008258.1 Protein Homology CDS 1360030 1360836 . - 0 ID=cds1422;Parent=gene1448;Dbxref=Genbank:WP_000573407.1;Name=WP_000573407.1;gbkey=CDS;product=peptide transport system ATP-binding protein SapF;protein_id=WP_000573407.1;transl_table=11 NC_008258.1 RefSeq gene 1360838 1361830 . - . ID=gene1449;Name=SFV_RS07280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07280;old_locus_tag=SFV_1305 NC_008258.1 Protein Homology CDS 1360838 1361830 . - 0 ID=cds1423;Parent=gene1449;Dbxref=Genbank:WP_001128858.1;Name=WP_001128858.1;Note=involved in resistance to antimibial peptides;gbkey=CDS;product=peptide transport system ATP-binding protein SapD;protein_id=WP_001128858.1;transl_table=11 NC_008258.1 RefSeq gene 1361830 1362720 . - . ID=gene1450;Name=SFV_RS07285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07285;old_locus_tag=SFV_1306 NC_008258.1 Protein Homology CDS 1361830 1362720 . - 0 ID=cds1424;Parent=gene1450;Dbxref=Genbank:WP_001146175.1;Name=WP_001146175.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_001146175.1;transl_table=11 NC_008258.1 RefSeq gene 1362707 1363672 . - . ID=gene1451;Name=SFV_RS07290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07290;old_locus_tag=SFV_1307 NC_008258.1 Protein Homology CDS 1362707 1363672 . - 0 ID=cds1425;Parent=gene1451;Dbxref=Genbank:WP_000583262.1;Name=WP_000583262.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000583262.1;transl_table=11 NC_008258.1 RefSeq gene 1363669 1365312 . - . ID=gene1452;Name=SFV_RS07295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07295;old_locus_tag=SFV_1308 NC_008258.1 Protein Homology CDS 1363669 1365312 . - 0 ID=cds1426;Parent=gene1452;Dbxref=Genbank:WP_001250213.1;Name=WP_001250213.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_001250213.1;transl_table=11 NC_008258.1 RefSeq gene 1365355 1365555 . - . ID=gene1453;Name=SFV_RS07300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07300 NC_008258.1 Protein Homology CDS 1365355 1365555 . - 0 ID=cds1427;Parent=gene1453;Dbxref=Genbank:WP_023636694.1;Name=WP_023636694.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023636694.1;transl_table=11 NC_008258.1 RefSeq gene 1365625 1365870 . - . ID=gene1454;Name=SFV_RS07305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07305;old_locus_tag=SFV_1309 NC_008258.1 Protein Homology CDS 1365625 1365870 . - 0 ID=cds1428;Parent=gene1454;Dbxref=Genbank:WP_001015110.1;Name=WP_001015110.1;gbkey=CDS;product=DUF2543 domain-containing protein;protein_id=WP_001015110.1;transl_table=11 NC_008258.1 RefSeq gene 1366004 1367389 . - . ID=gene1455;Name=SFV_RS07310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07310;old_locus_tag=SFV_1310 NC_008258.1 Protein Homology CDS 1366004 1367389 . - 0 ID=cds1429;Parent=gene1455;Dbxref=Genbank:WP_000996858.1;Name=WP_000996858.1;gbkey=CDS;product=putrescine importer PuuP;protein_id=WP_000996858.1;transl_table=11 NC_008258.1 RefSeq gene 1367692 1369110 . - . ID=gene1456;Name=SFV_RS07315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07315;old_locus_tag=SFV_1311 NC_008258.1 Protein Homology CDS 1367692 1369110 . - 0 ID=cds1430;Parent=gene1456;Dbxref=Genbank:WP_005105350.1;Name=WP_005105350.1;gbkey=CDS;product=gamma-glutamylputrescine synthetase;protein_id=WP_005105350.1;transl_table=11 NC_008258.1 RefSeq gene 1369497 1370087 . + . ID=gene1457;Name=puuD;gbkey=Gene;gene=puuD;gene_biotype=protein_coding;locus_tag=SFV_RS07320;old_locus_tag=SFV_1312 NC_008258.1 Protein Homology CDS 1369497 1370087 . + 0 ID=cds1431;Parent=gene1457;Dbxref=Genbank:WP_049760564.1;Name=WP_049760564.1;Note=catalyzes the degradation of gamma-glutamyl-gamma-aminobutyrate into glutamate and gamma-aminobutyrate;gbkey=CDS;gene=puuD;product=gamma-glutamyl-gamma-aminobutyrate hydrolase;protein_id=WP_049760564.1;transl_table=11 NC_008258.1 RefSeq gene 1370114 1370670 . + . ID=gene1458;Name=SFV_RS07325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07325;pseudo=true NC_008258.1 Protein Homology CDS 1370114 1370670 . + 0 ID=cds1432;Parent=gene1458;Note=regulates genes involved in putrescine degradation;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1370820 1372307 . + . ID=gene1459;Name=SFV_RS07330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07330;old_locus_tag=SFV_1314 NC_008258.1 Protein Homology CDS 1370820 1372307 . + 0 ID=cds1433;Parent=gene1459;Dbxref=Genbank:WP_001009101.1;Name=WP_001009101.1;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_001009101.1;transl_table=11 NC_008258.1 RefSeq gene 1372309 1373589 . + . ID=gene1460;Name=SFV_RS07335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07335;old_locus_tag=SFV_1315 NC_008258.1 Protein Homology CDS 1372309 1373589 . + 0 ID=cds1434;Parent=gene1460;Dbxref=Genbank:WP_000134881.1;Name=WP_000134881.1;Note=catalyzes the formation of gamma-glutamyl-gamma-aminobutyraldehyde from gamma-glutamylputrescine;gbkey=CDS;product=gamma-glutamylputrescine oxidoreductase;protein_id=WP_000134881.1;transl_table=11 NC_008258.1 RefSeq gene 1373627 1374892 . + . ID=gene1461;Name=SFV_RS07340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07340;old_locus_tag=SFV_1316 NC_008258.1 Protein Homology CDS 1373627 1374892 . + 0 ID=cds1435;Parent=gene1461;Dbxref=Genbank:WP_000069253.1;Name=WP_000069253.1;Note=catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate;gbkey=CDS;product=4-aminobutyrate aminotransferase;protein_id=WP_000069253.1;transl_table=11 NC_008258.1 RefSeq gene 1375012 1375989 . - . ID=gene1462;Name=pspF;gbkey=Gene;gene=pspF;gene_biotype=protein_coding;locus_tag=SFV_RS07345;old_locus_tag=SFV_1317 NC_008258.1 Protein Homology CDS 1375012 1375989 . - 0 ID=cds1436;Parent=gene1462;Dbxref=Genbank:WP_005105353.1;Name=WP_005105353.1;Note=transcriptional activator for pspABCE which are induced in response to phage proteins%2C membrane altering stresses%2C and impaired proton expor;gbkey=CDS;gene=pspF;product=transcriptional regulator;protein_id=WP_005105353.1;transl_table=11 NC_008258.1 RefSeq gene 1376156 1376824 . + . ID=gene1463;Name=SFV_RS07350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07350;old_locus_tag=SFV_1318 NC_008258.1 Protein Homology CDS 1376156 1376824 . + 0 ID=cds1437;Parent=gene1463;Dbxref=Genbank:WP_000511025.1;Name=WP_000511025.1;Note=involved in maintaining membrane potential under membrane stress conditions%3B also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF;gbkey=CDS;product=phage shock protein A;protein_id=WP_000511025.1;transl_table=11 NC_008258.1 RefSeq gene 1376878 1377102 . + . ID=gene1464;Name=pspB;gbkey=Gene;gene=pspB;gene_biotype=protein_coding;locus_tag=SFV_RS07355;old_locus_tag=SFV_1319 NC_008258.1 Protein Homology CDS 1376878 1377102 . + 0 ID=cds1438;Parent=gene1464;Dbxref=Genbank:WP_001274964.1;Name=WP_001274964.1;Note=DNA-binding transcriptional regulator%3B acts together with PspC to induce psp operon during infection with phage%2C exposure to ethanol or osmotic shock%3B forms a complex with PspA and C%3B PspC is required for PspAB binding;gbkey=CDS;gene=pspB;product=phage shock protein B;protein_id=WP_001274964.1;transl_table=11 NC_008258.1 RefSeq gene 1377102 1377461 . + . ID=gene1465;Name=SFV_RS07360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07360;old_locus_tag=SFV_1320 NC_008258.1 Protein Homology CDS 1377102 1377461 . + 0 ID=cds1439;Parent=gene1465;Dbxref=Genbank:WP_000907387.1;Name=WP_000907387.1;Note=with PsbB forms toxin/antitoxin pair%3B activates the psp operon in response to phage infection%2C exposure to ethanol or osmotic shock;gbkey=CDS;product=phage shock protein C;protein_id=WP_000907387.1;transl_table=11 NC_008258.1 RefSeq gene 1377470 1377691 . + . ID=gene1466;Name=SFV_RS07365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07365;old_locus_tag=SFV_1321 NC_008258.1 Protein Homology CDS 1377470 1377691 . + 0 ID=cds1440;Parent=gene1466;Dbxref=Genbank:WP_001359759.1;Name=WP_001359759.1;gbkey=CDS;product=phage-shock protein;protein_id=WP_001359759.1;transl_table=11 NC_008258.1 RefSeq gene 1377734 1378081 . + . ID=gene1467;Name=SFV_RS07370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07370;old_locus_tag=SFV_1322 NC_008258.1 Protein Homology CDS 1377734 1378081 . + 0 ID=cds1441;Parent=gene1467;Dbxref=Genbank:WP_000974116.1;Name=WP_000974116.1;Note=rhodanese%3B catalyzes the formation of thiocyanate from thiosulfate and hydrogen cyanide;gbkey=CDS;product=thiosulfate--cyanide sulfurtransferase;protein_id=WP_000974116.1;transl_table=11 NC_008258.1 RefSeq gene 1378293 1379396 . + . ID=gene1468;Name=SFV_RS07375;end_range=1379396,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07375;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1378293 1379396 . + 0 ID=cds1442;Parent=gene1468;end_range=1379396,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=sugar phosphorylase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1379394 1380169 . + . ID=id195;gbkey=repeat_region NC_008258.1 RefSeq region 1379397 1380164 . + . ID=id196;gbkey=mobile_element NC_008258.1 RefSeq gene 1379503 1379727 . + . ID=gene1469;Name=SFV_RS07380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07380 NC_008258.1 Protein Homology CDS 1379503 1379727 . + 0 ID=cds1443;Parent=gene1469;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1379646 1380149 . + . ID=gene1470;Name=SFV_RS07385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07385;old_locus_tag=SFV_1324 NC_008258.1 Protein Homology CDS 1379646 1380149 . + 0 ID=cds1444;Parent=gene1470;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 1380167 1380749 . + . ID=gene1471;Name=SFV_RS07390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07390;partial=true;pseudo=true;start_range=.,1380167 NC_008258.1 Protein Homology CDS 1380167 1380749 . + 0 ID=cds1445;Parent=gene1471;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=sugar phosphorylase;pseudo=true;start_range=.,1380167;transl_table=11 NC_008258.1 RefSeq gene 1380763 1381392 . + . ID=gene1472;Name=SFV_RS07395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07395 NC_008258.1 Protein Homology CDS 1380763 1381392 . + 0 ID=cds1446;Parent=gene1472;Dbxref=Genbank:WP_000597426.1;Name=WP_000597426.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000597426.1;transl_table=11 NC_008258.1 RefSeq gene 1381444 1382046 . + . ID=gene1473;Name=SFV_RS07400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07400 NC_008258.1 Protein Homology CDS 1381444 1382046 . + 0 ID=cds1447;Parent=gene1473;Dbxref=Genbank:WP_001148671.1;Name=WP_001148671.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_001148671.1;transl_table=11 NC_008258.1 RefSeq gene 1382067 1382948 . + . ID=gene1474;Name=SFV_RS07405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07405;old_locus_tag=SFV_1327 NC_008258.1 Protein Homology CDS 1382067 1382948 . + 0 ID=cds1448;Parent=gene1474;Dbxref=Genbank:WP_001080790.1;Name=WP_001080790.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_001080790.1;transl_table=11 NC_008258.1 RefSeq gene 1382935 1383777 . + . ID=gene1475;Name=SFV_RS07410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07410;old_locus_tag=SFV_1328 NC_008258.1 Protein Homology CDS 1382935 1383777 . + 0 ID=cds1449;Parent=gene1475;Dbxref=Genbank:WP_000224666.1;Name=WP_000224666.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_000224666.1;transl_table=11 NC_008258.1 RefSeq gene 1383808 1384860 . + . ID=gene1476;Name=SFV_RS07415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07415;old_locus_tag=SFV_1329 NC_008258.1 Protein Homology CDS 1383808 1384860 . + 0 ID=cds1450;Parent=gene1476;Dbxref=Genbank:WP_000737347.1;Name=WP_000737347.1;gbkey=CDS;product=Zn-dependent NAD(P)-binding oxidoreductase;protein_id=WP_000737347.1;transl_table=11 NC_008258.1 RefSeq gene 1384878 1385653 . + . ID=gene1477;Name=SFV_RS07420;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07420;pseudo=true NC_008258.1 Protein Homology CDS 1384878 1385653 . + 0 ID=cds1451;Parent=gene1477;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1385663 1386717 . + . ID=gene1478;Name=SFV_RS07425;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07425;pseudo=true NC_008258.1 Protein Homology CDS 1385663 1386717 . + 0 ID=cds1452;Parent=gene1478;exception=annotated by transcript or proteomic data;gbkey=CDS;product=oxidoreductase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1386714 1388981 . + . ID=gene1479;Name=SFV_RS07430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07430;old_locus_tag=SFV_1332 NC_008258.1 Protein Homology CDS 1386714 1388981 . + 0 ID=cds1453;Parent=gene1479;Dbxref=Genbank:WP_000198056.1;Name=WP_000198056.1;gbkey=CDS;product=glycosyl hydrolase family 65;protein_id=WP_000198056.1;transl_table=11 NC_008258.1 RefSeq gene 1388978 1389637 . + . ID=gene1480;Name=SFV_RS07435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07435;old_locus_tag=SFV_1333 NC_008258.1 Protein Homology CDS 1388978 1389637 . + 0 ID=cds1454;Parent=gene1480;Dbxref=Genbank:WP_000775779.1;Name=WP_000775779.1;Note=catalyzes the interconversion of beta-D-glucose 6-phosphate to beta-D-glucose 1-phosphate;gbkey=CDS;product=beta-phosphoglucomutase;protein_id=WP_000775779.1;transl_table=11 NC_008258.1 RefSeq gene 1389651 1390732 . + . ID=gene1481;Name=SFV_RS07440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07440;old_locus_tag=SFV_1334;pseudo=true NC_008258.1 Protein Homology CDS 1389651 1390732 . + 0 ID=cds1455;Parent=gene1481;exception=annotated by transcript or proteomic data;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1390805 1391602 . + . ID=gene1482;Name=SFV_RS07445;end_range=1391602,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07445;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1390805 1391602 . + 0 ID=cds1456;Parent=gene1482;end_range=1391602,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_except=(pos:1391483..1391485%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1391788 1392786 . - . ID=gene1483;Name=SFV_RS07455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07455;old_locus_tag=SFV_1336 NC_008258.1 Protein Homology CDS 1391788 1392786 . - 0 ID=cds1457;Parent=gene1483;Dbxref=Genbank:WP_000075384.1;Name=WP_000075384.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_000075384.1;transl_table=11 NC_008258.1 RefSeq gene 1392942 1394339 . + . ID=gene1484;Name=SFV_RS07460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07460;old_locus_tag=SFV_1337 NC_008258.1 Protein Homology CDS 1392942 1394339 . + 0 ID=cds1458;Parent=gene1484;Dbxref=Genbank:WP_000825771.1;Name=WP_000825771.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000825771.1;transl_table=11 NC_008258.1 RefSeq gene 1394336 1395397 . + . ID=gene1485;Name=SFV_RS07465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07465;old_locus_tag=SFV_1338 NC_008258.1 Protein Homology CDS 1394336 1395397 . + 0 ID=cds1459;Parent=gene1485;Dbxref=Genbank:WP_000138745.1;Name=WP_000138745.1;gbkey=CDS;product=membrane protein;protein_id=WP_000138745.1;transl_table=11 NC_008258.1 RefSeq gene 1395545 1397086 . + . ID=gene1486;Name=SFV_RS07470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07470;old_locus_tag=SFV_1339 NC_008258.1 Protein Homology CDS 1395545 1397086 . + 0 ID=cds1460;Parent=gene1486;Dbxref=Genbank:WP_001306544.1;Name=WP_001306544.1;Note=regulates genes involved in the biosynthesis and transport of aromatic amino acids;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001306544.1;transl_table=11 NC_008258.1 RefSeq gene 1397130 1397636 . - . ID=gene1487;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=SFV_RS07475;old_locus_tag=SFV_1340 NC_008258.1 Protein Homology CDS 1397130 1397636 . - 0 ID=cds1461;Parent=gene1487;Dbxref=Genbank:WP_000084387.1;Name=WP_000084387.1;Note=antioxidant activity%3B thioredoxin-dependent thiol peroxidase%3B forms homodimers in solution%3B shows substrate specificity to alkyl hydroperoxides%3B periplasmic protein;gbkey=CDS;gene=tpx;product=thiol peroxidase;protein_id=WP_000084387.1;transl_table=11 NC_008258.1 RefSeq gene 1397755 1398720 . + . ID=gene1488;Name=SFV_RS07480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07480;old_locus_tag=SFV_1341 NC_008258.1 Protein Homology CDS 1397755 1398720 . + 0 ID=cds1462;Parent=gene1488;Dbxref=Genbank:WP_005049759.1;Name=WP_005049759.1;Note=catalyzes the epimerization of L-alanyl-D-glutamate to L-alanyl-L-glutamate;gbkey=CDS;product=L-Ala-D/L-Glu epimerase;protein_id=WP_005049759.1;transl_table=11 NC_008258.1 RefSeq gene 1398695 1399423 . - . ID=gene1489;Name=SFV_RS07485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07485;old_locus_tag=SFV_1342 NC_008258.1 Protein Homology CDS 1398695 1399423 . - 0 ID=cds1463;Parent=gene1489;Dbxref=Genbank:WP_024260265.1;Name=WP_024260265.1;gbkey=CDS;product=murein peptide amidase A;protein_id=WP_024260265.1;transl_table=11 NC_008258.1 RefSeq gene 1399714 1400352 . - . ID=gene1490;Name=SFV_RS07490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07490;old_locus_tag=SFV_1343 NC_008258.1 Protein Homology CDS 1399714 1400352 . - 0 ID=cds1464;Parent=gene1490;Dbxref=Genbank:WP_005049763.1;Name=WP_005049763.1;gbkey=CDS;product=NAD-dependent dehydratase;protein_id=WP_005049763.1;transl_table=11 NC_008258.1 RefSeq gene 1400370 1400900 . - . ID=gene1491;Name=SFV_RS07495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07495;old_locus_tag=SFV_1344 NC_008258.1 Protein Homology CDS 1400370 1400900 . - 0 ID=cds1465;Parent=gene1491;Dbxref=Genbank:WP_000028747.1;Name=WP_000028747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000028747.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1400950 1402408 . + . ID=id197;gbkey=repeat_region NC_008258.1 RefSeq region 1401034 1402407 . - . ID=id198;gbkey=mobile_element NC_008258.1 RefSeq gene 1401180 1402376 . + . ID=gene1492;Name=SFV_RS07500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07500;old_locus_tag=SFV_1345 NC_008258.1 Protein Homology CDS 1401180 1402376 . + 0 ID=cds1466;Parent=gene1492;Dbxref=Genbank:WP_011069353.1;Name=WP_011069353.1;gbkey=CDS;product=transposase;protein_id=WP_011069353.1;transl_table=11 NC_008258.1 RefSeq gene 1402390 1402752 . - . ID=gene1493;Name=SFV_RS07505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07505;old_locus_tag=SFV_1346 NC_008258.1 Protein Homology CDS 1402390 1402752 . - 0 ID=cds1467;Parent=gene1493;Dbxref=Genbank:WP_000680615.1;Name=WP_000680615.1;gbkey=CDS;product=dienelactone hydrolase;protein_id=WP_000680615.1;transl_table=11 NC_008258.1 RefSeq gene 1402752 1403672 . - . ID=gene1494;Name=SFV_RS07510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07510;old_locus_tag=SFV_1347 NC_008258.1 Protein Homology CDS 1402752 1403672 . - 0 ID=cds1468;Parent=gene1494;Dbxref=Genbank:WP_000981715.1;Name=WP_000981715.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000981715.1;transl_table=11 NC_008258.1 RefSeq gene 1403810 1404250 . + . ID=gene1495;Name=SFV_RS07515;end_range=1404250,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07515;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1403810 1404250 . + 0 ID=cds1469;Parent=gene1495;end_range=1404250,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1404244 1405511 . + . ID=id199;gbkey=repeat_region NC_008258.1 RefSeq region 1404246 1405509 . - . ID=id200;gbkey=mobile_element NC_008258.1 RefSeq gene 1404289 1405002 . - . ID=gene1496;Name=SFV_RS07520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07520;old_locus_tag=SFV_1348 NC_008258.1 Protein Homology CDS 1404289 1405002 . - 0 ID=cds1470;Parent=gene1496;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1405143 1405445 . - . ID=gene1497;Name=SFV_RS07525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07525;old_locus_tag=SFV_1349 NC_008258.1 Protein Homology CDS 1405143 1405445 . - 0 ID=cds1471;Parent=gene1497;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 1405549 1405749 . + . ID=gene1498;Name=SFV_RS07530;end_range=1405749,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07530;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1405549 1405749 . + 0 ID=cds1472;Parent=gene1498;end_range=1405749,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1405744 1406997 . + . ID=id201;gbkey=repeat_region NC_008258.1 RefSeq region 1405746 1406995 . + . ID=id202;gbkey=mobile_element NC_008258.1 RefSeq gene 1405782 1406120 . + . ID=gene1499;Name=SFV_RS07535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07535;old_locus_tag=SFV_1350 NC_008258.1 Protein Homology CDS 1405782 1406120 . + 0 ID=cds1473;Parent=gene1499;Dbxref=Genbank:WP_011587218.1;Name=WP_011587218.1;gbkey=CDS;product=transposase;protein_id=WP_011587218.1;transl_table=11 NC_008258.1 RefSeq gene 1406309 1406987 . + . ID=gene1500;Name=SFV_RS07540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07540;old_locus_tag=SFV_1351;pseudo=true NC_008258.1 Protein Homology CDS 1406309 1406987 . + 0 ID=cds1474;Parent=gene1500;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1407212 1408546 . + . ID=id203;gbkey=repeat_region NC_008258.1 RefSeq region 1407215 1408545 . - . ID=id204;gbkey=mobile_element NC_008258.1 RefSeq gene 1407226 1408131 . - . ID=gene1501;Name=SFV_RS07545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07545;old_locus_tag=SFV_1352 NC_008258.1 Protein Homology CDS 1407226 1408131 . - 0 ID=cds1475;Parent=gene1501;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 1408089 1408454 . - . ID=gene1502;Name=SFV_RS07550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07550;old_locus_tag=SFV_1353 NC_008258.1 Protein Homology CDS 1408089 1408454 . - 0 ID=cds1476;Parent=gene1502;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1408657 1409286 . + . ID=gene1503;Name=SFV_RS07555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07555;old_locus_tag=SFV_1354 NC_008258.1 Protein Homology CDS 1408657 1409286 . + 0 ID=cds1477;Parent=gene1503;Dbxref=Genbank:WP_000889298.1;Name=WP_000889298.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000889298.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1409099 1409544 . + . ID=id205;gbkey=repeat_region NC_008258.1 RefSeq gene 1409293 1410039 . + . ID=gene1504;Name=SFV_RS07560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07560;old_locus_tag=SFV_1355 NC_008258.1 Protein Homology CDS 1409293 1410039 . + 0 ID=cds1478;Parent=gene1504;Dbxref=Genbank:WP_000788995.1;Name=WP_000788995.1;gbkey=CDS;product=DNA replication protein DnaC;protein_id=WP_000788995.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1409800 1410976 . + . ID=id206;gbkey=repeat_region NC_008258.1 RefSeq gene 1410054 1410476 . + . ID=gene1505;Name=SFV_RS07565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07565 NC_008258.1 Protein Homology CDS 1410054 1410476 . + 0 ID=cds1479;Parent=gene1505;Dbxref=Genbank:WP_001118167.1;Name=WP_001118167.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001118167.1;transl_table=11 NC_008258.1 RefSeq gene 1410534 1410890 . + . ID=gene1506;Name=SFV_RS07570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07570;old_locus_tag=SFV_1356 NC_008258.1 Protein Homology CDS 1410534 1410890 . + 0 ID=cds1480;Parent=gene1506;Dbxref=Genbank:WP_005048249.1;Name=WP_005048249.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048249.1;transl_table=11 NC_008258.1 RefSeq gene 1410983 1411201 . + . ID=gene1507;Name=SFV_RS07575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07575;old_locus_tag=SFV_1357 NC_008258.1 Protein Homology CDS 1410983 1411201 . + 0 ID=cds1481;Parent=gene1507;Dbxref=Genbank:WP_000256998.1;Name=WP_000256998.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000256998.1;transl_table=11 NC_008258.1 RefSeq gene 1411203 1411568 . + . ID=gene1508;Name=SFV_RS07580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07580 NC_008258.1 Protein Homology CDS 1411203 1411568 . + 0 ID=cds1482;Parent=gene1508;Dbxref=Genbank:WP_001229298.1;Name=WP_001229298.1;gbkey=CDS;product=HNH endonuclease;protein_id=WP_001229298.1;transl_table=11 NC_008258.1 RefSeq gene 1411565 1412230 . + . ID=gene1509;Name=SFV_RS07585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07585;old_locus_tag=SFV_1358 NC_008258.1 Protein Homology CDS 1411565 1412230 . + 0 ID=cds1483;Parent=gene1509;Dbxref=Genbank:WP_000208062.1;Name=WP_000208062.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000208062.1;transl_table=11 NC_008258.1 RefSeq gene 1412230 1412584 . + . ID=gene1510;Name=SFV_RS24460;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24460;old_locus_tag=SFV_1359;pseudo=true NC_008258.1 Protein Homology CDS 1412230 1412584 . + 0 ID=cds1484;Parent=gene1510;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1412863 1412937 . - . ID=gene1511;Name=SFV_RS07595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07595;partial=true;pseudo=true;start_range=.,1412863 NC_008258.1 Protein Homology CDS 1412863 1412937 . - 0 ID=cds1485;Parent=gene1511;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1412863;transl_table=11 NC_008258.1 RefSeq repeat_region 1412907 1413283 . + . ID=id207;gbkey=repeat_region NC_008258.1 RefSeq gene 1412982 1413194 . + . ID=gene1512;Name=SFV_RS07600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07600 NC_008258.1 Protein Homology CDS 1412982 1413194 . + 0 ID=cds1486;Parent=gene1512;Dbxref=Genbank:WP_000018421.1;Name=WP_000018421.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000018421.1;transl_table=11 NC_008258.1 RefSeq gene 1413470 1413682 . + . ID=gene1513;Name=SFV_RS07605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07605 NC_008258.1 Protein Homology CDS 1413470 1413682 . + 0 ID=cds1487;Parent=gene1513;Dbxref=Genbank:WP_000411314.1;Name=WP_000411314.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000411314.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1413682 1414457 . + . ID=id208;gbkey=repeat_region NC_008258.1 RefSeq region 1413685 1414452 . - . ID=id209;gbkey=mobile_element NC_008258.1 RefSeq gene 1413700 1414203 . - . ID=gene1514;Name=SFV_RS07610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07610;old_locus_tag=SFV_1360 NC_008258.1 Protein Homology CDS 1413700 1414203 . - 0 ID=cds1488;Parent=gene1514;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 1414122 1414346 . - . ID=gene1515;Name=SFV_RS07615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07615 NC_008258.1 Protein Homology CDS 1414122 1414346 . - 0 ID=cds1489;Parent=gene1515;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1414529 1415558 . + . ID=id210;gbkey=repeat_region NC_008258.1 RefSeq gene 1414531 1415130 . + . ID=gene1516;Name=SFV_RS07620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07620;old_locus_tag=SFV_1361 NC_008258.1 Protein Homology CDS 1414531 1415130 . + 0 ID=cds1490;Parent=gene1516;Dbxref=Genbank:WP_000940330.1;Name=WP_000940330.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000940330.1;transl_table=11 NC_008258.1 RefSeq gene 1415130 1415420 . + . ID=gene1517;Name=SFV_RS07625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07625;old_locus_tag=SFV_1362 NC_008258.1 Protein Homology CDS 1415130 1415420 . + 0 ID=cds1491;Parent=gene1517;Dbxref=Genbank:WP_000228038.1;Name=WP_000228038.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000228038.1;transl_table=11 NC_008258.1 RefSeq gene 1415417 1415971 . + . ID=gene1518;Name=SFV_RS07630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07630;old_locus_tag=SFV_1363 NC_008258.1 Protein Homology CDS 1415417 1415971 . + 0 ID=cds1492;Parent=gene1518;Dbxref=Genbank:WP_000640145.1;Name=WP_000640145.1;gbkey=CDS;product=late gene antiterminator protein;protein_id=WP_000640145.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1415678 1416471 . + . ID=id211;gbkey=repeat_region NC_008258.1 RefSeq gene 1416161 1416237 . + . ID=gene1519;Name=SFV_RS07635;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS07635;old_locus_tag=SFV_1364 NC_008258.1 tRNAscan-SE tRNA 1416161 1416237 . + . ID=rna26;Parent=gene1519;anticodon=(pos:1416195..1416197);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 1416161 1416237 . + . ID=id212;Parent=rna26;anticodon=(pos:1416195..1416197);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 1416239 1416315 . + . ID=gene1520;Name=SFV_RS07640;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS07640;old_locus_tag=SFV_1365 NC_008258.1 tRNAscan-SE tRNA 1416239 1416315 . + . ID=rna27;Parent=gene1520;anticodon=(pos:1416273..1416275);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 1416239 1416315 . + . ID=id213;Parent=rna27;anticodon=(pos:1416273..1416275);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 1416318 1416393 . + . ID=gene1521;Name=SFV_RS07645;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS07645;old_locus_tag=SFV_1366 NC_008258.1 tRNAscan-SE tRNA 1416318 1416393 . + . ID=rna28;Parent=gene1521;anticodon=(pos:1416351..1416353);gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 1416318 1416393 . + . ID=id214;Parent=rna28;anticodon=(pos:1416351..1416353);gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 1416397 1416471 . + . ID=gene1522;Name=SFV_RS07650;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS07650;old_locus_tag=SFV_1367 NC_008258.1 tRNAscan-SE tRNA 1416397 1416471 . + . ID=rna29;Parent=gene1522;anticodon=(pos:1416430..1416432);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 1416397 1416471 . + . ID=id215;Parent=rna29;anticodon=(pos:1416430..1416432);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 1416736 1418190 . + . ID=gene1523;Name=SFV_RS07655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07655;old_locus_tag=SFV_1368 NC_008258.1 Protein Homology CDS 1416736 1418190 . + 0 ID=cds1493;Parent=gene1523;Dbxref=Genbank:WP_044023878.1;Name=WP_044023878.1;gbkey=CDS;product=integrase;protein_id=WP_044023878.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1418203 1418449 . + . ID=id216;gbkey=repeat_region NC_008258.1 RefSeq gene 1419185 1419367 . + . ID=gene1524;Name=SFV_RS07660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07660 NC_008258.1 Protein Homology CDS 1419185 1419367 . + 0 ID=cds1494;Parent=gene1524;Dbxref=Genbank:WP_000082750.1;Name=WP_000082750.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000082750.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1419336 1423781 . + . ID=id217;gbkey=repeat_region NC_008258.1 RefSeq region 1419341 1420108 . + . ID=id218;gbkey=mobile_element NC_008258.1 RefSeq gene 1419590 1420093 . + . ID=gene1525;Name=SFV_RS07665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07665;old_locus_tag=SFV_1370 NC_008258.1 Protein Homology CDS 1419590 1420093 . + 0 ID=cds1495;Parent=gene1525;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq region 1420109 1421057 . + . ID=id219;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1420301 1421014 . + . ID=gene1526;Name=SFV_RS07670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07670;old_locus_tag=SFV_1371 NC_008258.1 Protein Homology CDS 1420301 1421014 . + 0 ID=cds1496;Parent=gene1526;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1421144 1421410 . + . ID=gene1527;Name=SFV_RS07675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07675 NC_008258.1 Protein Homology CDS 1421144 1421410 . + 0 ID=cds1497;Parent=gene1527;Dbxref=Genbank:WP_044023879.1;Name=WP_044023879.1;gbkey=CDS;product=sugar transporter;protein_id=WP_044023879.1;transl_table=11 NC_008258.1 RefSeq gene 1421607 1421978 . + . ID=gene1528;Name=SFV_RS07680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07680;old_locus_tag=SFV_1373 NC_008258.1 Protein Homology CDS 1421607 1421978 . + 0 ID=cds1498;Parent=gene1528;Dbxref=Genbank:WP_000262328.1;Name=WP_000262328.1;gbkey=CDS;product=tail assembly protein;protein_id=WP_000262328.1;transl_table=11 NC_008258.1 RefSeq gene 1422002 1423270 . + . ID=gene1529;Name=SFV_RS07685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07685;old_locus_tag=SFV_1374 NC_008258.1 Protein Homology CDS 1422002 1423270 . + 0 ID=cds1499;Parent=gene1529;Dbxref=Genbank:WP_011587219.1;Name=WP_011587219.1;gbkey=CDS;product=tail protein;protein_id=WP_011587219.1;transl_table=11 NC_008258.1 RefSeq gene 1423221 1423844 . + . ID=gene1530;Name=SFV_RS07690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07690;old_locus_tag=SFV_1375 NC_008258.1 Protein Homology CDS 1423221 1423844 . + 0 ID=cds1500;Parent=gene1530;Dbxref=Genbank:WP_005105376.1;Name=WP_005105376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105376.1;transl_table=11 NC_008258.1 RefSeq gene 1424045 1424902 . - . ID=gene1531;Name=SFV_RS07695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07695;old_locus_tag=SFV_1376 NC_008258.1 Protein Homology CDS 1424045 1424902 . - 0 ID=cds1501;Parent=gene1531;Dbxref=Genbank:WP_000968134.1;Name=WP_000968134.1;gbkey=CDS;product=membrane protein;protein_id=WP_000968134.1;transl_table=11 NC_008258.1 RefSeq gene 1424899 1425756 . - . ID=gene1532;Name=SFV_RS07700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07700 NC_008258.1 Protein Homology CDS 1424899 1425756 . - 0 ID=cds1502;Parent=gene1532;Dbxref=Genbank:WP_001101728.1;Name=WP_001101728.1;gbkey=CDS;product=membrane protein;protein_id=WP_001101728.1;transl_table=11 NC_008258.1 RefSeq gene 1425753 1426580 . - . ID=gene1533;Name=SFV_RS07705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07705;old_locus_tag=SFV_1378 NC_008258.1 Protein Homology CDS 1425753 1426580 . - 0 ID=cds1503;Parent=gene1533;Dbxref=Genbank:WP_000983722.1;Name=WP_000983722.1;Note=with SitACD is involved in the transport of manganese and iron;gbkey=CDS;product=manganese transporter;protein_id=WP_000983722.1;transl_table=11 NC_008258.1 RefSeq gene 1426580 1427494 . - . ID=gene1534;Name=SFV_RS07710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07710;old_locus_tag=SFV_1379 NC_008258.1 Protein Homology CDS 1426580 1427494 . - 0 ID=cds1504;Parent=gene1534;Dbxref=Genbank:WP_000555620.1;Name=WP_000555620.1;gbkey=CDS;product=iron ABC transporter substrate-binding protein;protein_id=WP_000555620.1;transl_table=11 NC_008258.1 RefSeq gene 1427945 1428085 . - . ID=gene1535;Name=SFV_RS07715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07715 NC_008258.1 Protein Homology CDS 1427945 1428085 . - 0 ID=cds1505;Parent=gene1535;Dbxref=Genbank:WP_005023097.1;Name=WP_005023097.1;gbkey=CDS;product=integrase;protein_id=WP_005023097.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1428582 1429354 . + . ID=id220;gbkey=repeat_region NC_008258.1 RefSeq region 1428585 1429352 . + . ID=id221;gbkey=mobile_element NC_008258.1 RefSeq gene 1428691 1428915 . + . ID=gene1536;Name=SFV_RS07720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07720 NC_008258.1 Protein Homology CDS 1428691 1428915 . + 0 ID=cds1506;Parent=gene1536;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1428834 1429337 . + . ID=gene1537;Name=SFV_RS07725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07725;old_locus_tag=SFV_1382 NC_008258.1 Protein Homology CDS 1428834 1429337 . + 0 ID=cds1507;Parent=gene1537;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1429645 1434391 . + . ID=id222;gbkey=repeat_region NC_008258.1 RefSeq region 1429646 1432399 . - . ID=id223;gbkey=mobile_element NC_008258.1 RefSeq gene 1429728 1430402 . + . ID=gene1538;Name=SFV_RS07730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07730;old_locus_tag=SFV_1383 NC_008258.1 Protein Homology CDS 1429728 1430402 . + 0 ID=cds1508;Parent=gene1538;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq gene 1430399 1430746 . + . ID=gene1539;Name=SFV_RS07735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07735;old_locus_tag=SFV_1384 NC_008258.1 Protein Homology CDS 1430399 1430746 . + 0 ID=cds1509;Parent=gene1539;Dbxref=Genbank:WP_000631712.1;Name=WP_000631712.1;gbkey=CDS;product=transposase;protein_id=WP_000631712.1;transl_table=11 NC_008258.1 RefSeq gene 1430766 1432367 . + . ID=gene1540;Name=SFV_RS07740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07740;old_locus_tag=SFV_1385 NC_008258.1 Protein Homology CDS 1430766 1432367 . + 0 ID=cds1510;Parent=gene1540;Dbxref=Genbank:WP_004967149.1;Name=WP_004967149.1;gbkey=CDS;product=transposase;protein_id=WP_004967149.1;transl_table=11 NC_008258.1 RefSeq gene 1432399 1432737 . + . ID=gene1541;Name=SFV_RS07745;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07745;partial=true;pseudo=true;start_range=.,1432399 NC_008258.1 Protein Homology CDS 1432399 1432737 . + 0 ID=cds1511;Parent=gene1541;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,1432399;transl_table=11 NC_008258.1 RefSeq region 1432399 1432507 . - . ID=id224;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1432626 1433249 . + . ID=gene1542;Name=SFV_RS07750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07750;old_locus_tag=SFV_1386 NC_008258.1 Protein Homology CDS 1432626 1433249 . + 0 ID=cds1512;Parent=gene1542;Dbxref=Genbank:WP_000930138.1;Name=WP_000930138.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000930138.1;transl_table=11 NC_008258.1 RefSeq gene 1433249 1433428 . + . ID=gene1543;Name=SFV_RS07755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07755 NC_008258.1 Protein Homology CDS 1433249 1433428 . + 0 ID=cds1513;Parent=gene1543;Dbxref=Genbank:WP_001039899.1;Name=WP_001039899.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039899.1;transl_table=11 NC_008258.1 RefSeq gene 1433429 1435075 . - . ID=gene1544;Name=SFV_RS07760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07760;old_locus_tag=SFV_1387 NC_008258.1 Protein Homology CDS 1433429 1435075 . - 0 ID=cds1514;Parent=gene1544;Dbxref=Genbank:WP_000936813.1;Name=WP_000936813.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000936813.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1435264 1435391 . + . ID=id225;gbkey=repeat_region NC_008258.1 RefSeq gene 1435825 1436271 . + . ID=gene1545;Name=SFV_RS07765;end_range=1436271,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07765;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1435825 1436271 . + 0 ID=cds1515;Parent=gene1545;end_range=1436271,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=serine/threonine protein phosphatase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1436269 1437538 . + . ID=id226;gbkey=repeat_region NC_008258.1 RefSeq region 1436272 1437535 . + . ID=id227;gbkey=mobile_element NC_008258.1 RefSeq gene 1436336 1436638 . + . ID=gene1546;Name=SFV_RS07770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07770;old_locus_tag=SFV_1389 NC_008258.1 Protein Homology CDS 1436336 1436638 . + 0 ID=cds1516;Parent=gene1546;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 1436779 1437492 . + . ID=gene1547;Name=SFV_RS07775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07775;old_locus_tag=SFV_1390 NC_008258.1 Protein Homology CDS 1436779 1437492 . + 0 ID=cds1517;Parent=gene1547;Dbxref=Genbank:WP_000940425.1;Name=WP_000940425.1;gbkey=CDS;product=transposase;protein_id=WP_000940425.1;transl_table=11 NC_008258.1 RefSeq gene 1437563 1437724 . + . ID=gene1548;Name=SFV_RS07780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07780 NC_008258.1 Protein Homology CDS 1437563 1437724 . + 0 ID=cds1518;Parent=gene1548;Dbxref=Genbank:WP_000554382.1;Name=WP_000554382.1;gbkey=CDS;product=serine/threonine phosphatase;protein_id=WP_000554382.1;transl_table=11 NC_008258.1 RefSeq gene 1437749 1437940 . - . ID=gene1549;Name=SFV_RS07785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07785 NC_008258.1 Protein Homology CDS 1437749 1437940 . - 0 ID=cds1519;Parent=gene1549;Dbxref=Genbank:WP_001296140.1;Name=WP_001296140.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296140.1;transl_table=11 NC_008258.1 RefSeq gene 1438045 1438281 . - . ID=gene1550;Name=SFV_RS07790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07790;old_locus_tag=SFV_1392 NC_008258.1 Protein Homology CDS 1438045 1438281 . - 0 ID=cds1520;Parent=gene1550;Dbxref=Genbank:WP_001295499.1;Name=WP_001295499.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295499.1;transl_table=11 NC_008258.1 RefSeq gene 1438399 1439838 . - . ID=gene1551;Name=yebU;gbkey=Gene;gene=yebU;gene_biotype=protein_coding;locus_tag=SFV_RS07795;old_locus_tag=SFV_1393 NC_008258.1 Protein Homology CDS 1438399 1439838 . - 0 ID=cds1521;Parent=gene1551;Dbxref=Genbank:WP_000057029.1;Name=WP_000057029.1;Note=in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA;gbkey=CDS;gene=yebU;product=ribosomal RNA small subunit methyltransferase F;protein_id=WP_000057029.1;transl_table=11 NC_008258.1 RefSeq gene 1439918 1442551 . - . ID=gene1552;Name=SFV_RS07800;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS07800;pseudo=true NC_008258.1 Protein Homology CDS 1439918 1442551 . - 0 ID=cds1522;Parent=gene1552;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1441886..1441888)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1442520 1443803 . - . ID=gene1553;Name=SFV_RS07805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07805;old_locus_tag=SFV_1396 NC_008258.1 Protein Homology CDS 1442520 1443803 . - 0 ID=cds1523;Parent=gene1553;Dbxref=Genbank:WP_001207281.1;Name=WP_001207281.1;gbkey=CDS;product=membrane protein;protein_id=WP_001207281.1;transl_table=11 NC_008258.1 RefSeq gene 1443933 1444430 . + . ID=gene1554;Name=SFV_RS07810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07810;old_locus_tag=SFV_1397 NC_008258.1 Protein Homology CDS 1443933 1444430 . + 0 ID=cds1524;Parent=gene1554;Dbxref=Genbank:WP_001043881.1;Name=WP_001043881.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001043881.1;transl_table=11 NC_008258.1 RefSeq gene 1444527 1445225 . + . ID=gene1555;Name=SFV_RS07815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07815;old_locus_tag=SFV_1398 NC_008258.1 Protein Homology CDS 1444527 1445225 . + 0 ID=cds1525;Parent=gene1555;Dbxref=Genbank:WP_000431389.1;Name=WP_000431389.1;Note=affects solute and DNA transport through an unknown mechanism;gbkey=CDS;product=RNA chaperone ProQ;protein_id=WP_000431389.1;transl_table=11 NC_008258.1 RefSeq gene 1445245 1447293 . + . ID=gene1556;Name=SFV_RS07820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07820;old_locus_tag=SFV_1399 NC_008258.1 Protein Homology CDS 1445245 1447293 . + 0 ID=cds1526;Parent=gene1556;Dbxref=Genbank:WP_001055799.1;Name=WP_001055799.1;Note=Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3;gbkey=CDS;product=carboxyl-terminal processing protease;protein_id=WP_001055799.1;transl_table=11 NC_008258.1 RefSeq gene 1447485 1448366 . + . ID=gene1557;Name=SFV_RS07825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07825;old_locus_tag=SFV_1400 NC_008258.1 Protein Homology CDS 1447485 1448366 . + 0 ID=cds1527;Parent=gene1557;Dbxref=Genbank:WP_000984517.1;Name=WP_000984517.1;Note=metalloprotease;gbkey=CDS;product=protease HtpX;protein_id=WP_000984517.1;transl_table=11 NC_008258.1 RefSeq gene 1448412 1449785 . - . ID=gene1558;Name=SFV_RS07830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07830;old_locus_tag=SFV_1401 NC_008258.1 Protein Homology CDS 1448412 1449785 . - 0 ID=cds1528;Parent=gene1558;Dbxref=Genbank:WP_001127218.1;Name=WP_001127218.1;gbkey=CDS;product=multidrug MFS transporter;protein_id=WP_001127218.1;transl_table=11 NC_008258.1 RefSeq gene 1449962 1450753 . + . ID=gene1559;Name=SFV_RS07835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07835;old_locus_tag=SFV_1402 NC_008258.1 Protein Homology CDS 1449962 1450753 . + 0 ID=cds1529;Parent=gene1559;Dbxref=Genbank:WP_001262169.1;Name=WP_001262169.1;Note=regulates the genes involved in 2-keto-3-deoxy gluconate transport and catabolism;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001262169.1;transl_table=11 NC_008258.1 RefSeq gene 1450896 1451135 . - . ID=gene1560;Name=SFV_RS07840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07840 NC_008258.1 Protein Homology CDS 1450896 1451135 . - 0 ID=cds1530;Parent=gene1560;Dbxref=Genbank:WP_001211010.1;Name=WP_001211010.1;gbkey=CDS;product=membrane protein;protein_id=WP_001211010.1;transl_table=11 NC_008258.1 RefSeq gene 1451294 1451437 . + . ID=gene1561;Name=SFV_RS07845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07845;old_locus_tag=SFV_1403 NC_008258.1 Protein Homology CDS 1451294 1451437 . + 0 ID=cds1531;Parent=gene1561;Dbxref=Genbank:WP_000714550.1;Name=WP_000714550.1;gbkey=CDS;product=PhoP family transcriptional regulator;protein_id=WP_000714550.1;transl_table=11 NC_008258.1 RefSeq gene 1451512 1451799 . + . ID=gene1562;Name=SFV_RS07850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07850;old_locus_tag=SFV_1404 NC_008258.1 Protein Homology CDS 1451512 1451799 . + 0 ID=cds1532;Parent=gene1562;Dbxref=Genbank:WP_001006860.1;Name=WP_001006860.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001006860.1;transl_table=11 NC_008258.1 RefSeq gene 1452301 1452507 . - . ID=gene1563;Name=SFV_RS07855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07855 NC_008258.1 Protein Homology CDS 1452301 1452507 . - 0 ID=cds1533;Parent=gene1563;Dbxref=Genbank:WP_032320227.1;Name=WP_032320227.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032320227.1;transl_table=11 NC_008258.1 cmsearch region 1452449 1452909 . + . ID=id228;Note=cspA;gbkey=misc_feature NC_008258.1 RefSeq gene 1452469 1452612 . + . ID=gene1564;Name=SFV_RS07860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07860 NC_008258.1 Protein Homology CDS 1452469 1452612 . + 0 ID=cds1534;Parent=gene1564;Dbxref=Genbank:WP_001295496.1;Name=WP_001295496.1;gbkey=CDS;product=DUF2527 domain-containing protein;protein_id=WP_001295496.1;transl_table=11 NC_008258.1 RefSeq gene 1452625 1452834 . + . ID=gene1565;Name=SFV_RS07865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07865;old_locus_tag=SFV_1405 NC_008258.1 Protein Homology CDS 1452625 1452834 . + 0 ID=cds1535;Parent=gene1565;Dbxref=Genbank:WP_001062678.1;Name=WP_001062678.1;gbkey=CDS;product=cold-shock protein CspC;protein_id=WP_001062678.1;transl_table=11 NC_008258.1 RefSeq gene 1453000 1453809 . + . ID=gene1566;Name=rrmA;gbkey=Gene;gene=rrmA;gene_biotype=protein_coding;locus_tag=SFV_RS07870;old_locus_tag=SFV_1406 NC_008258.1 Protein Homology CDS 1453000 1453809 . + 0 ID=cds1536;Parent=gene1566;Dbxref=Genbank:WP_000010128.1;Name=WP_000010128.1;Note=methylates the guanosine in position 745 of 23S rRNA%3B required for translation and cell growth;gbkey=CDS;gene=rrmA;product=23S rRNA methyltransferase;protein_id=WP_000010128.1;transl_table=11 NC_008258.1 RefSeq gene 1453806 1454372 . - . ID=gene1567;Name=SFV_RS07875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07875 NC_008258.1 Protein Homology CDS 1453806 1454372 . - 0 ID=cds1537;Parent=gene1567;Dbxref=Genbank:WP_001668667.1;Name=WP_001668667.1;Note=membrane protein YebN;gbkey=CDS;product=manganese efflux pump MntP;protein_id=WP_001668667.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1454817 1455592 . + . ID=id229;gbkey=repeat_region NC_008258.1 RefSeq region 1454820 1455587 . - . ID=id230;gbkey=mobile_element NC_008258.1 RefSeq gene 1454838 1455338 . - . ID=gene1568;Name=SFV_RS24465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24465;old_locus_tag=SFV_1408;partial=true;pseudo=true;start_range=.,1454838 NC_008258.1 Protein Homology CDS 1454838 1455338 . - 0 ID=cds1538;Parent=gene1568;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,1454838;transl_table=11 NC_008258.1 RefSeq gene 1455257 1455481 . - . ID=gene1569;Name=SFV_RS07890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07890 NC_008258.1 Protein Homology CDS 1455257 1455481 . - 0 ID=cds1539;Parent=gene1569;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1455561 1456037 . - . ID=gene1570;Name=SFV_RS07895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07895;old_locus_tag=SFV_1409 NC_008258.1 Protein Homology CDS 1455561 1456037 . - 0 ID=cds1540;Parent=gene1570;Dbxref=Genbank:WP_000156246.1;Name=WP_000156246.1;gbkey=CDS;product=membrane protein;protein_id=WP_000156246.1;transl_table=11 NC_008258.1 RefSeq gene 1456092 1456943 . - . ID=gene1571;Name=SFV_RS07900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07900;old_locus_tag=SFV_1410 NC_008258.1 Protein Homology CDS 1456092 1456943 . - 0 ID=cds1541;Parent=gene1571;Dbxref=Genbank:WP_001331209.1;Name=WP_001331209.1;Note=hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IID with IIC forms the translocation channel;gbkey=CDS;product=PTS mannose transporter subunit IID;protein_id=WP_001331209.1;transl_table=11 NC_008258.1 RefSeq gene 1456956 1457756 . - . ID=gene1572;Name=SFV_RS07905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07905;old_locus_tag=SFV_1411 NC_008258.1 Protein Homology CDS 1456956 1457756 . - 0 ID=cds1542;Parent=gene1572;Dbxref=Genbank:WP_000406926.1;Name=WP_000406926.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site;gbkey=CDS;product=mannose permease IIC component;protein_id=WP_000406926.1;transl_table=11 NC_008258.1 RefSeq gene 1457819 1458790 . - . ID=gene1573;Name=SFV_RS07910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07910;old_locus_tag=SFV_1412 NC_008258.1 Protein Homology CDS 1457819 1458790 . - 0 ID=cds1543;Parent=gene1573;Dbxref=Genbank:WP_000150543.1;Name=WP_000150543.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate;gbkey=CDS;product=PTS mannose EIIAB component;protein_id=WP_000150543.1;transl_table=11 NC_008258.1 RefSeq gene 1459056 1459265 . + . ID=gene1574;Name=SFV_RS07915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07915 NC_008258.1 Protein Homology CDS 1459056 1459265 . + 0 ID=cds1544;Parent=gene1574;Dbxref=Genbank:WP_001306763.1;Name=WP_001306763.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001306763.1;transl_table=11 NC_008258.1 RefSeq gene 1459253 1460803 . + . ID=gene1575;Name=SFV_RS07920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07920;old_locus_tag=SFV_1413 NC_008258.1 Protein Homology CDS 1459253 1460803 . + 0 ID=cds1545;Parent=gene1575;Dbxref=Genbank:WP_000394969.1;Name=WP_000394969.1;gbkey=CDS;product=membrane protein;protein_id=WP_000394969.1;transl_table=11 NC_008258.1 RefSeq gene 1460807 1462405 . - . ID=gene1576;Name=SFV_RS07925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07925;old_locus_tag=SFV_1414 NC_008258.1 Protein Homology CDS 1460807 1462405 . - 0 ID=cds1546;Parent=gene1576;Dbxref=Genbank:WP_005049862.1;Name=WP_005049862.1;gbkey=CDS;product=cyclic di-GMP phosphodiesterase;protein_id=WP_005049862.1;transl_table=11 NC_008258.1 RefSeq gene 1462536 1463900 . - . ID=gene1577;Name=SFV_RS07930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07930;old_locus_tag=SFV_1415 NC_008258.1 Protein Homology CDS 1462536 1463900 . - 0 ID=cds1547;Parent=gene1577;Dbxref=Genbank:WP_000624314.1;Name=WP_000624314.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase;protein_id=WP_000624314.1;transl_table=11 NC_008258.1 RefSeq gene 1464084 1464662 . - . ID=gene1578;Name=SFV_RS07935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07935;old_locus_tag=SFV_1416 NC_008258.1 Protein Homology CDS 1464084 1464662 . - 0 ID=cds1548;Parent=gene1578;Dbxref=Genbank:WP_000456708.1;Name=WP_000456708.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_000456708.1;transl_table=11 NC_008258.1 RefSeq gene 1464666 1466027 . - . ID=gene1579;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=SFV_RS07940;old_locus_tag=SFV_1417 NC_008258.1 Protein Homology CDS 1464666 1466027 . - 0 ID=cds1549;Parent=gene1579;Dbxref=Genbank:WP_000855040.1;Name=WP_000855040.1;Note=para-aminobenzoate synthase component 1%3B catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine;gbkey=CDS;gene=pabB;product=aminodeoxychorismate synthase component I;protein_id=WP_000855040.1;transl_table=11 NC_008258.1 RefSeq gene 1466101 1466280 . + . ID=gene1580;Name=SFV_RS07945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07945;old_locus_tag=SFV_1418 NC_008258.1 Protein Homology CDS 1466101 1466280 . + 0 ID=cds1550;Parent=gene1580;Dbxref=Genbank:WP_000457332.1;Name=WP_000457332.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000457332.1;transl_table=11 NC_008258.1 RefSeq gene 1466400 1466699 . - . ID=gene1581;Name=SFV_RS07950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07950;old_locus_tag=SFV_1419 NC_008258.1 Protein Homology CDS 1466400 1466699 . - 0 ID=cds1551;Parent=gene1581;Dbxref=Genbank:WP_001111995.1;Name=WP_001111995.1;gbkey=CDS;product=DUF1889 domain-containing protein;protein_id=WP_001111995.1;transl_table=11 NC_008258.1 RefSeq gene 1467115 1467459 . - . ID=gene1582;Name=SFV_RS07955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07955;old_locus_tag=SFV_1420 NC_008258.1 Protein Homology CDS 1467115 1467459 . - 0 ID=cds1552;Parent=gene1582;Dbxref=Genbank:WP_001295493.1;Name=WP_001295493.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295493.1;transl_table=11 NC_008258.1 RefSeq gene 1467591 1469501 . + . ID=gene1583;Name=SFV_RS07960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07960;old_locus_tag=SFV_1421 NC_008258.1 Protein Homology CDS 1467591 1469501 . + 0 ID=cds1553;Parent=gene1583;Dbxref=Genbank:WP_000128849.1;Name=WP_000128849.1;gbkey=CDS;product=ATP-dependent helicase;protein_id=WP_000128849.1;transl_table=11 NC_008258.1 RefSeq gene 1469559 1470254 . + . ID=gene1584;Name=SFV_RS07965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07965;old_locus_tag=SFV_1422 NC_008258.1 Protein Homology CDS 1469559 1470254 . + 0 ID=cds1554;Parent=gene1584;Dbxref=Genbank:WP_001220997.1;Name=WP_001220997.1;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaB;protein_id=WP_001220997.1;transl_table=11 NC_008258.1 RefSeq gene 1470294 1470875 . + . ID=gene1585;Name=SFV_RS07970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07970;old_locus_tag=SFV_1423 NC_008258.1 Protein Homology CDS 1470294 1470875 . + 0 ID=cds1555;Parent=gene1585;Dbxref=Genbank:WP_000290576.1;Name=WP_000290576.1;gbkey=CDS;product=Slp family lipoprotein%2C RpoE-regulated;protein_id=WP_000290576.1;transl_table=11 NC_008258.1 RefSeq gene 1471047 1472765 . + . ID=gene1586;Name=SFV_RS07975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07975;old_locus_tag=SFV_1424 NC_008258.1 Protein Homology CDS 1471047 1472765 . + 0 ID=cds1556;Parent=gene1586;Dbxref=Genbank:WP_005105417.1;Name=WP_005105417.1;Note=Activates fatty acids by binding to coenzyme A;gbkey=CDS;product=long-chain fatty acid--CoA ligase;protein_id=WP_005105417.1;transl_table=11 NC_008258.1 RefSeq gene 1472847 1473962 . + . ID=gene1587;Name=SFV_RS07980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07980;old_locus_tag=SFV_1425 NC_008258.1 Protein Homology CDS 1472847 1473962 . + 0 ID=cds1557;Parent=gene1587;Dbxref=Genbank:WP_005049885.1;Name=WP_005049885.1;gbkey=CDS;product=ribonuclease D;protein_id=WP_005049885.1;transl_table=11 NC_008258.1 RefSeq gene 1474016 1474981 . - . ID=gene1588;Name=SFV_RS07985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07985;old_locus_tag=SFV_1426 NC_008258.1 Protein Homology CDS 1474016 1474981 . - 0 ID=cds1558;Parent=gene1588;Dbxref=Genbank:WP_001287020.1;Name=WP_001287020.1;gbkey=CDS;product=dioxygenase subunit beta;protein_id=WP_001287020.1;transl_table=11 NC_008258.1 RefSeq gene 1475037 1475630 . - . ID=gene1589;Name=SFV_RS07990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07990;old_locus_tag=SFV_1427 NC_008258.1 Protein Homology CDS 1475037 1475630 . - 0 ID=cds1559;Parent=gene1589;Dbxref=Genbank:WP_000114032.1;Name=WP_000114032.1;gbkey=CDS;product=dioxygenase;protein_id=WP_000114032.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1475602 1476872 . + . ID=id231;gbkey=repeat_region NC_008258.1 RefSeq region 1475605 1476868 . + . ID=id232;gbkey=mobile_element NC_008258.1 RefSeq gene 1475669 1475971 . + . ID=gene1590;Name=SFV_RS07995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS07995;old_locus_tag=SFV_1428 NC_008258.1 Protein Homology CDS 1475669 1475971 . + 0 ID=cds1560;Parent=gene1590;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 1476112 1476825 . + . ID=gene1591;Name=SFV_RS08000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08000;old_locus_tag=SFV_1429 NC_008258.1 Protein Homology CDS 1476112 1476825 . + 0 ID=cds1561;Parent=gene1591;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 1476822 1477217 . - . ID=gene1592;Name=SFV_RS08005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08005;old_locus_tag=SFV_1430 NC_008258.1 Protein Homology CDS 1476822 1477217 . - 0 ID=cds1562;Parent=gene1592;Dbxref=Genbank:WP_005105423.1;Name=WP_005105423.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105423.1;transl_table=11 NC_008258.1 RefSeq gene 1477272 1477457 . - . ID=gene1593;Name=SFV_RS08010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08010 NC_008258.1 Protein Homology CDS 1477272 1477457 . - 0 ID=cds1563;Parent=gene1593;Dbxref=Genbank:WP_024260267.1;Name=WP_024260267.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260267.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1477491 1478265 . + . ID=id233;gbkey=repeat_region NC_008258.1 RefSeq region 1477494 1478261 . + . ID=id234;gbkey=mobile_element NC_008258.1 RefSeq gene 1477600 1477824 . + . ID=gene1594;Name=SFV_RS08015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08015 NC_008258.1 Protein Homology CDS 1477600 1477824 . + 0 ID=cds1564;Parent=gene1594;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1477743 1478246 . + . ID=gene1595;Name=SFV_RS08020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08020;old_locus_tag=SFV_1432 NC_008258.1 Protein Homology CDS 1477743 1478246 . + 0 ID=cds1565;Parent=gene1595;Dbxref=Genbank:WP_005105427.1;Name=WP_005105427.1;gbkey=CDS;product=transposase;protein_id=WP_005105427.1;transl_table=11 NC_008258.1 RefSeq gene 1478670 1479416 . + . ID=gene1596;Name=SFV_RS08025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08025;old_locus_tag=SFV_1433 NC_008258.1 Protein Homology CDS 1478670 1479416 . + 0 ID=cds1566;Parent=gene1596;Dbxref=Genbank:WP_000163771.1;Name=WP_000163771.1;Note=scaffolding protein for the murein polymerase MrcB and the lytic transglycosylase MltA;gbkey=CDS;product=MltA-interacting protein;protein_id=WP_000163771.1;transl_table=11 NC_008258.1 RefSeq gene 1479506 1480267 . + . ID=gene1597;Name=SFV_RS08030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08030;old_locus_tag=SFV_1434 NC_008258.1 Protein Homology CDS 1479506 1480267 . + 0 ID=cds1567;Parent=gene1597;Dbxref=Genbank:WP_001186355.1;Name=WP_001186355.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001186355.1;transl_table=11 NC_008258.1 RefSeq gene 1480318 1481202 . - . ID=gene1598;Name=SFV_RS08035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08035;old_locus_tag=SFV_1435 NC_008258.1 Protein Homology CDS 1480318 1481202 . - 0 ID=cds1568;Parent=gene1598;Dbxref=Genbank:WP_001343163.1;Name=WP_001343163.1;gbkey=CDS;product=glucose-6-phosphate 1-epimerase;protein_id=WP_001343163.1;transl_table=11 NC_008258.1 RefSeq gene 1481286 1482281 . - . ID=gene1599;Name=SFV_RS08040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08040;old_locus_tag=SFV_1436 NC_008258.1 Protein Homology CDS 1481286 1482281 . - 0 ID=cds1569;Parent=gene1599;Dbxref=Genbank:WP_005105431.1;Name=WP_005105431.1;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;protein_id=WP_005105431.1;transl_table=11 NC_008258.1 RefSeq gene 1482624 1483037 . + . ID=gene1600;Name=SFV_RS08045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08045;old_locus_tag=SFV_1437 NC_008258.1 Protein Homology CDS 1482624 1483037 . + 0 ID=cds1570;Parent=gene1600;Dbxref=Genbank:WP_001284613.1;Name=WP_001284613.1;gbkey=CDS;product=peptide methionine sulfoxide reductase MsrB;protein_id=WP_001284613.1;transl_table=11 NC_008258.1 RefSeq gene 1483079 1483351 . + . ID=gene1601;Name=SFV_RS08050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08050;old_locus_tag=SFV_1438 NC_008258.1 Protein Homology CDS 1483079 1483351 . + 0 ID=cds1571;Parent=gene1601;Dbxref=Genbank:WP_001046790.1;Name=WP_001046790.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001046790.1;transl_table=11 NC_008258.1 RefSeq gene 1483721 1484797 . + . ID=gene1602;Name=SFV_RS08055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08055;old_locus_tag=SFV_1439 NC_008258.1 Protein Homology CDS 1483721 1484797 . + 0 ID=cds1572;Parent=gene1602;Dbxref=Genbank:WP_000645228.1;Name=WP_000645228.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000645228.1;transl_table=11 NC_008258.1 RefSeq gene 1484824 1486053 . + . ID=gene1603;Name=SFV_RS08060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08060;old_locus_tag=SFV_1440 NC_008258.1 Protein Homology CDS 1484824 1486053 . + 0 ID=cds1573;Parent=gene1603;Dbxref=Genbank:WP_005105433.1;Name=WP_005105433.1;gbkey=CDS;product=transporter;protein_id=WP_005105433.1;transl_table=11 NC_008258.1 RefSeq gene 1486206 1487251 . + . ID=gene1604;Name=SFV_RS08065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08065;pseudo=true NC_008258.1 Protein Homology CDS 1486206 1487251 . + 0 ID=cds1574;Parent=gene1604;exception=annotated by transcript or proteomic data;gbkey=CDS;product=alcohol dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1487272 1488108 . + . ID=gene1605;Name=SFV_RS08070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08070;old_locus_tag=SFV_1442 NC_008258.1 Protein Homology CDS 1487272 1488108 . + 0 ID=cds1575;Parent=gene1605;Dbxref=Genbank:WP_000878906.1;Name=WP_000878906.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000878906.1;transl_table=11 NC_008258.1 RefSeq gene 1488113 1489060 . + . ID=gene1606;Name=SFV_RS08075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08075;old_locus_tag=SFV_1443 NC_008258.1 Protein Homology CDS 1488113 1489060 . + 0 ID=cds1576;Parent=gene1606;Dbxref=Genbank:WP_011587221.1;Name=WP_011587221.1;gbkey=CDS;product=sugar kinase;protein_id=WP_011587221.1;transl_table=11 NC_008258.1 RefSeq gene 1489070 1490050 . + . ID=gene1607;Name=SFV_RS08080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08080;old_locus_tag=SFV_1444 NC_008258.1 Protein Homology CDS 1489070 1490050 . + 0 ID=cds1577;Parent=gene1607;Dbxref=Genbank:WP_000723702.1;Name=WP_000723702.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000723702.1;transl_table=11 NC_008258.1 RefSeq gene 1490187 1490945 . + . ID=gene1608;Name=SFV_RS08085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08085;old_locus_tag=SFV_1445 NC_008258.1 Protein Homology CDS 1490187 1490945 . + 0 ID=cds1578;Parent=gene1608;Dbxref=Genbank:WP_000719101.1;Name=WP_000719101.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000719101.1;transl_table=11 NC_008258.1 RefSeq gene 1491063 1491632 . + . ID=gene1609;Name=SFV_RS08090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08090 NC_008258.1 Protein Homology CDS 1491063 1491632 . + 0 ID=cds1579;Parent=gene1609;Dbxref=Genbank:WP_024260269.1;Name=WP_024260269.1;gbkey=CDS;product=transporter;protein_id=WP_024260269.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1491840 1492615 . + . ID=id235;gbkey=repeat_region NC_008258.1 RefSeq region 1491843 1492610 . + . ID=id236;gbkey=mobile_element NC_008258.1 RefSeq gene 1491949 1492173 . + . ID=gene1610;Name=SFV_RS08095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08095 NC_008258.1 Protein Homology CDS 1491949 1492173 . + 0 ID=cds1580;Parent=gene1610;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1492092 1492595 . + . ID=gene1611;Name=SFV_RS08100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08100 NC_008258.1 Protein Homology CDS 1492092 1492595 . + 0 ID=cds1581;Parent=gene1611;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 1492611 1493198 . + . ID=gene1612;Name=SFV_RS08105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08105;partial=true;pseudo=true;start_range=.,1492611 NC_008258.1 Protein Homology CDS 1492611 1493198 . + 0 ID=cds1582;Parent=gene1612;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=MFS transporter;pseudo=true;start_range=.,1492611;transl_table=11 NC_008258.1 RefSeq gene 1493291 1493932 . - . ID=gene1613;Name=SFV_RS08110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08110;old_locus_tag=SFV_1449 NC_008258.1 Protein Homology CDS 1493291 1493932 . - 0 ID=cds1583;Parent=gene1613;Dbxref=Genbank:WP_001120538.1;Name=WP_001120538.1;Note=catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide;gbkey=CDS;product=nicotinamidase/pyrazinamidase;protein_id=WP_001120538.1;transl_table=11 NC_008258.1 RefSeq gene 1493943 1494959 . - . ID=gene1614;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=SFV_RS08115;old_locus_tag=SFV_1450 NC_008258.1 Protein Homology CDS 1493943 1494959 . - 0 ID=cds1584;Parent=gene1614;Dbxref=Genbank:WP_001170144.1;Name=WP_001170144.1;Note=converts asparagine to aspartate and ammonia;gbkey=CDS;gene=ansA;product=asparaginase;protein_id=WP_001170144.1;transl_table=11 NC_008258.1 RefSeq gene 1495126 1496982 . - . ID=gene1615;Name=SFV_RS08120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08120;old_locus_tag=SFV_1451 NC_008258.1 Protein Homology CDS 1495126 1496982 . - 0 ID=cds1585;Parent=gene1615;Dbxref=Genbank:WP_001259829.1;Name=WP_001259829.1;Note=SppA%3B catalyzes the degradation of cleaved signal peptides%3B essential to maintain secretion of mature proteins across the membrane;gbkey=CDS;product=signal peptide peptidase SppA;protein_id=WP_001259829.1;transl_table=11 NC_008258.1 RefSeq gene 1496925 1497089 . - . ID=gene1616;Name=SFV_RS08125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08125 NC_008258.1 Protein Homology CDS 1496925 1497089 . - 0 ID=cds1586;Parent=gene1616;Dbxref=Genbank:WP_001453023.1;Name=WP_001453023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001453023.1;transl_table=11 NC_008258.1 RefSeq gene 1497161 1497694 . + . ID=gene1617;Name=SFV_RS08130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08130;old_locus_tag=SFV_1452 NC_008258.1 Protein Homology CDS 1497161 1497694 . + 0 ID=cds1587;Parent=gene1617;Dbxref=Genbank:WP_000610639.1;Name=WP_000610639.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000610639.1;transl_table=11 NC_008258.1 RefSeq gene 1497720 1497869 . + . ID=gene1618;Name=SFV_RS08135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08135 NC_008258.1 Protein Homology CDS 1497720 1497869 . + 0 ID=cds1588;Parent=gene1618;Dbxref=Genbank:WP_012602004.1;Name=WP_012602004.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012602004.1;transl_table=11 NC_008258.1 RefSeq gene 1497811 1498854 . + . ID=gene1619;Name=SFV_RS08140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08140;old_locus_tag=SFV_1453 NC_008258.1 Protein Homology CDS 1497811 1498854 . + 0 ID=cds1589;Parent=gene1619;Dbxref=Genbank:WP_001370476.1;Name=WP_001370476.1;Note=catalyzes the formation of selenophosphate from selenide and ATP;gbkey=CDS;product=selenophosphate synthase;protein_id=WP_001370476.1;transl_table=11 NC_008258.1 RefSeq gene 1498859 1500820 . + . ID=gene1620;Name=SFV_RS08145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08145;old_locus_tag=SFV_1454 NC_008258.1 Protein Homology CDS 1498859 1500820 . + 0 ID=cds1590;Parent=gene1620;Dbxref=Genbank:WP_001235813.1;Name=WP_001235813.1;Note=decatenates replicating daughter chromosomes;gbkey=CDS;product=DNA topoisomerase III;protein_id=WP_001235813.1;transl_table=11 NC_008258.1 RefSeq gene 1500948 1501622 . + . ID=gene1621;Name=SFV_RS08150;end_range=1501622,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08150;old_locus_tag=SFV_1455;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1500948 1501622 . + 0 ID=cds1591;Parent=gene1621;end_range=1501622,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1501620 1502395 . + . ID=id237;gbkey=repeat_region NC_008258.1 RefSeq region 1501625 1502392 . + . ID=id238;gbkey=mobile_element NC_008258.1 RefSeq gene 1501731 1501955 . + . ID=gene1622;Name=SFV_RS08155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08155 NC_008258.1 Protein Homology CDS 1501731 1501955 . + 0 ID=cds1592;Parent=gene1622;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1501982 1502377 . + . ID=gene1623;Name=SFV_RS08160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08160 NC_008258.1 Protein Homology CDS 1501982 1502377 . + 0 ID=cds1593;Parent=gene1623;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 1502394 1502765 . + . ID=gene1624;Name=SFV_RS08165;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08165;partial=true;pseudo=true;start_range=.,1502394 NC_008258.1 Protein Homology CDS 1502394 1502765 . + 0 ID=cds1594;Parent=gene1624;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1502394;transl_table=11 NC_008258.1 RefSeq gene 1502882 1504225 . - . ID=gene1625;Name=SFV_RS08170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08170;old_locus_tag=SFV_1457 NC_008258.1 Protein Homology CDS 1502882 1504225 . - 0 ID=cds1595;Parent=gene1625;Dbxref=Genbank:WP_000373026.1;Name=WP_000373026.1;Note=converts 2-oxoglutarate to glutamate%3B in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction%3B uses NADPH%3B forms a homohexamer;gbkey=CDS;product=glutamate dehydrogenase;protein_id=WP_000373026.1;transl_table=11 NC_008258.1 RefSeq gene 1504461 1504733 . + . ID=gene1626;Name=SFV_RS08175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08175;old_locus_tag=SFV_1458 NC_008258.1 Protein Homology CDS 1504461 1504733 . + 0 ID=cds1596;Parent=gene1626;Dbxref=Genbank:WP_000085238.1;Name=WP_000085238.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000085238.1;transl_table=11 NC_008258.1 RefSeq gene 1504699 1505106 . - . ID=gene1627;Name=SFV_RS08180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08180;old_locus_tag=SFV_1459 NC_008258.1 Protein Homology CDS 1504699 1505106 . - 0 ID=cds1597;Parent=gene1627;Dbxref=Genbank:WP_000781873.1;Name=WP_000781873.1;gbkey=CDS;product=pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_000781873.1;transl_table=11 NC_008258.1 RefSeq gene 1505193 1505750 . + . ID=gene1628;Name=SFV_RS08185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08185;old_locus_tag=SFV_1460 NC_008258.1 Protein Homology CDS 1505193 1505750 . + 0 ID=cds1598;Parent=gene1628;Dbxref=Genbank:WP_000886992.1;Name=WP_000886992.1;gbkey=CDS;product=membrane protein;protein_id=WP_000886992.1;transl_table=11 NC_008258.1 RefSeq gene 1505759 1506478 . - . ID=gene1629;Name=SFV_RS08190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08190 NC_008258.1 Protein Homology CDS 1505759 1506478 . - 0 ID=cds1599;Parent=gene1629;Dbxref=Genbank:WP_000443261.1;Name=WP_000443261.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000443261.1;transl_table=11 NC_008258.1 RefSeq gene 1506542 1507066 . - . ID=gene1630;Name=SFV_RS08195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08195 NC_008258.1 Protein Homology CDS 1506542 1507066 . - 0 ID=cds1600;Parent=gene1630;Dbxref=Genbank:WP_000832680.1;Name=WP_000832680.1;gbkey=CDS;product=thiosulfate sulfurtransferase;protein_id=WP_000832680.1;transl_table=11 NC_008258.1 RefSeq gene 1507133 1507786 . - . ID=gene1631;Name=SFV_RS08200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08200;old_locus_tag=SFV_1462 NC_008258.1 Protein Homology CDS 1507133 1507786 . - 0 ID=cds1601;Parent=gene1631;Dbxref=Genbank:WP_004972005.1;Name=WP_004972005.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_004972005.1;transl_table=11 NC_008258.1 RefSeq gene 1507786 1509303 . - . ID=gene1632;Name=SFV_RS08205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08205;pseudo=true NC_008258.1 Protein Homology CDS 1507786 1509303 . - 0 ID=cds1602;Parent=gene1632;exception=annotated by transcript or proteomic data;gbkey=CDS;product=thiamine ABC transporter permease;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1509276 1510091 . - . ID=gene1633;Name=SFV_RS08210;end_range=1510091,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08210;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1509276 1510091 . - 0 ID=cds1603;Parent=gene1633;end_range=1510091,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1509759..1509761)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 1510088 1511521 . + . ID=id239;gbkey=repeat_region NC_008258.1 RefSeq region 1510092 1511519 . + . ID=id240;gbkey=mobile_element NC_008258.1 RefSeq gene 1510177 1511505 . + . ID=gene1634;Name=SFV_RS08215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08215;old_locus_tag=SFV_1465 NC_008258.1 Protein Homology CDS 1510177 1511505 . + 0 ID=cds1604;Parent=gene1634;Dbxref=Genbank:WP_000547279.1;Name=WP_000547279.1;gbkey=CDS;product=transposase;protein_id=WP_000547279.1;transl_table=11 NC_008258.1 RefSeq gene 1511516 1511845 . - . ID=gene1635;Name=SFV_RS08220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08220;old_locus_tag=SFV_1466 NC_008258.1 Protein Homology CDS 1511516 1511845 . - 0 ID=cds1605;Parent=gene1635;Dbxref=Genbank:WP_001215295.1;Name=WP_001215295.1;gbkey=CDS;product=ABC transporter substrate-binding protein;protein_id=WP_001215295.1;transl_table=11 NC_008258.1 RefSeq gene 1511855 1512403 . - . ID=gene1636;Name=SFV_RS08225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08225;old_locus_tag=SFV_1467 NC_008258.1 Protein Homology CDS 1511855 1512403 . - 0 ID=cds1606;Parent=gene1636;Dbxref=Genbank:WP_000524089.1;Name=WP_000524089.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000524089.1;transl_table=11 NC_008258.1 RefSeq gene 1512403 1513110 . - . ID=gene1637;Name=SFV_RS08230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08230;old_locus_tag=SFV_1468 NC_008258.1 Protein Homology CDS 1512403 1513110 . - 0 ID=cds1607;Parent=gene1637;Dbxref=Genbank:WP_000975811.1;Name=WP_000975811.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000975811.1;transl_table=11 NC_008258.1 RefSeq gene 1513125 1513802 . - . ID=gene1638;Name=SFV_RS08235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08235;old_locus_tag=SFV_1469 NC_008258.1 Protein Homology CDS 1513125 1513802 . - 0 ID=cds1608;Parent=gene1638;Dbxref=Genbank:WP_000077941.1;Name=WP_000077941.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000077941.1;transl_table=11 NC_008258.1 RefSeq gene 1513807 1514517 . - . ID=gene1639;Name=SFV_RS08240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08240;old_locus_tag=SFV_1470 NC_008258.1 Protein Homology CDS 1513807 1514517 . - 0 ID=cds1609;Parent=gene1639;Dbxref=Genbank:WP_005049965.1;Name=WP_005049965.1;gbkey=CDS;product=membrane protein;protein_id=WP_005049965.1;transl_table=11 NC_008258.1 RefSeq gene 1514684 1515490 . - . ID=gene1640;Name=SFV_RS08245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08245;old_locus_tag=SFV_1471 NC_008258.1 Protein Homology CDS 1514684 1515490 . - 0 ID=cds1610;Parent=gene1640;Dbxref=Genbank:WP_000673908.1;Name=WP_000673908.1;gbkey=CDS;product=exodeoxyribonuclease III;protein_id=WP_000673908.1;transl_table=11 NC_008258.1 RefSeq gene 1515936 1517156 . + . ID=gene1641;Name=SFV_RS08250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08250;pseudo=true NC_008258.1 Protein Homology CDS 1515936 1517156 . + 0 ID=cds1611;Parent=gene1641;Note=catalyzes the transamination of 2-N-succinylornithine and alpha-ketoglutarate into 2-N-succinylglutamate semialdehyde and glutamate%3B also functions as the catabolic acetylornithine aminotransferase catalyzing the formation of 2-N-acetylglutamate semialdehyde and glutamate from 2-N-acetylornithine and alpha-ketoglutarate;gbkey=CDS;product=acetylornithine aminotransferase;pseudo=true;transl_except=(pos:1516512..1516514%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1517153 1518187 . + . ID=gene1642;Name=SFV_RS08255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08255;old_locus_tag=SFV_1473 NC_008258.1 Protein Homology CDS 1517153 1518187 . + 0 ID=cds1612;Parent=gene1642;Dbxref=Genbank:WP_000989398.1;Name=WP_000989398.1;gbkey=CDS;product=arginine N-succinyltransferase;protein_id=WP_000989398.1;transl_table=11 NC_008258.1 RefSeq gene 1518184 1519662 . + . ID=gene1643;Name=astD;gbkey=Gene;gene=astD;gene_biotype=protein_coding;locus_tag=SFV_RS08260;old_locus_tag=SFV_1474 NC_008258.1 Protein Homology CDS 1518184 1519662 . + 0 ID=cds1613;Parent=gene1643;Dbxref=Genbank:WP_000177222.1;Name=WP_000177222.1;Note=a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity%3B converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH;gbkey=CDS;gene=astD;product=N-succinylglutamate 5-semialdehyde dehydrogenase;protein_id=WP_000177222.1;transl_table=11 NC_008258.1 RefSeq gene 1519659 1520992 . + . ID=gene1644;Name=SFV_RS08265;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08265;pseudo=true NC_008258.1 Protein Homology CDS 1519659 1520992 . + 0 ID=cds1614;Parent=gene1644;Note=catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine%2C ammonia and carbon dioxide in arginine degradation;exception=annotated by transcript or proteomic data;gbkey=CDS;product=succinylarginine dihydrolase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1520985 1521953 . + . ID=gene1645;Name=SFV_RS08270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08270;old_locus_tag=SFV_1476 NC_008258.1 Protein Homology CDS 1520985 1521953 . + 0 ID=cds1615;Parent=gene1645;Dbxref=Genbank:WP_000368516.1;Name=WP_000368516.1;Note=catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism;gbkey=CDS;product=succinylglutamate desuccinylase;protein_id=WP_000368516.1;transl_table=11 NC_008258.1 RefSeq gene 1522283 1522768 . + . ID=gene1646;Name=SFV_RS08275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08275;old_locus_tag=SFV_1477 NC_008258.1 Protein Homology CDS 1522283 1522768 . + 0 ID=cds1616;Parent=gene1646;Dbxref=Genbank:WP_001228978.1;Name=WP_001228978.1;Note=periplasmic protein induced by stress response via Cpx and BaeSR system%3B similar to CpxP;gbkey=CDS;product=hypothetical protein;protein_id=WP_001228978.1;transl_table=11 NC_008258.1 RefSeq gene 1522971 1523546 . + . ID=gene1647;Name=SFV_RS08280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08280;old_locus_tag=SFV_1478 NC_008258.1 Protein Homology CDS 1522971 1523546 . + 0 ID=cds1617;Parent=gene1647;Dbxref=Genbank:WP_001370505.1;Name=WP_001370505.1;gbkey=CDS;product=protein Ves;protein_id=WP_001370505.1;transl_table=11 NC_008258.1 RefSeq gene 1523506 1524393 . - . ID=gene1648;Name=SFV_RS08285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08285;old_locus_tag=SFV_1479 NC_008258.1 Protein Homology CDS 1523506 1524393 . - 0 ID=cds1618;Parent=gene1648;Dbxref=Genbank:WP_000252353.1;Name=WP_000252353.1;Note=3' incision activity%3B acts with UvrC;gbkey=CDS;product=nucleotide excision repair endonuclease;protein_id=WP_000252353.1;transl_table=11 NC_008258.1 RefSeq gene 1524463 1524612 . + . ID=gene1649;Name=SFV_RS08290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08290 NC_008258.1 Protein Homology CDS 1524463 1524612 . + 0 ID=cds1619;Parent=gene1649;Dbxref=Genbank:WP_032145487.1;Name=WP_032145487.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032145487.1;transl_table=11 NC_008258.1 RefSeq gene 1524623 1525450 . - . ID=gene1650;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=SFV_RS08295;old_locus_tag=SFV_1480 NC_008258.1 Protein Homology CDS 1524623 1525450 . - 0 ID=cds1620;Parent=gene1650;Dbxref=Genbank:WP_000175045.1;Name=WP_000175045.1;Note=catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP%3B ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one%3B forms homodimers;gbkey=CDS;gene=nadE;product=nH(3)-dependent NAD+ synthetase;protein_id=WP_000175045.1;transl_table=11 NC_008258.1 RefSeq gene 1525652 1525990 . + . ID=gene1651;Name=SFV_RS08300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08300;old_locus_tag=SFV_1481 NC_008258.1 Protein Homology CDS 1525652 1525990 . + 0 ID=cds1621;Parent=gene1651;Dbxref=Genbank:WP_001039044.1;Name=WP_001039044.1;Note=osmotically-inducible lipoprotein E%3B activator of ntr-like gene protein;gbkey=CDS;product=osmotically-inducible lipoprotein E;protein_id=WP_001039044.1;transl_table=11 NC_008258.1 RefSeq gene 1526289 1526609 . + . ID=gene1652;Name=SFV_RS08305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08305;old_locus_tag=SFV_1482 NC_008258.1 Protein Homology CDS 1526289 1526609 . + 0 ID=cds1622;Parent=gene1652;Dbxref=Genbank:WP_000412158.1;Name=WP_000412158.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS N'-diacetylchitobiose transporter subunit IIB;protein_id=WP_000412158.1;transl_table=11 NC_008258.1 RefSeq gene 1526694 1528043 . + . ID=gene1653;Name=SFV_RS08310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08310;old_locus_tag=SFV_1483 NC_008258.1 Protein Homology CDS 1526694 1528043 . + 0 ID=cds1623;Parent=gene1653;Dbxref=Genbank:WP_000073004.1;Name=WP_000073004.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved in N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS N'-diacetylchitobiose transporter subunit IIC;protein_id=WP_000073004.1;transl_table=11 NC_008258.1 RefSeq gene 1528102 1528452 . + . ID=gene1654;Name=SFV_RS08315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08315 NC_008258.1 Protein Homology CDS 1528102 1528452 . + 0 ID=cds1624;Parent=gene1654;Dbxref=Genbank:WP_000968919.1;Name=WP_000968919.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B involved N%2CN'-diacetylchitobiose transport%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=N%2CN'-diacetylchitobiose-specific phosphotransferase enzyme IIA component;protein_id=WP_000968919.1;transl_table=11 NC_008258.1 RefSeq gene 1528463 1529302 . + . ID=gene1655;Name=SFV_RS08320;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08320;pseudo=true NC_008258.1 Protein Homology CDS 1528463 1529302 . + 0 ID=cds1625;Parent=gene1655;Note=represses the celABCDF-ydjC operon involved in carbon uptake;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_except=(pos:1528973..1528975%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1529407 1530759 . + . ID=gene1656;Name=SFV_RS08325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08325;old_locus_tag=SFV_1486 NC_008258.1 Protein Homology CDS 1529407 1530759 . + 0 ID=cds1626;Parent=gene1656;Dbxref=Genbank:WP_000078729.1;Name=WP_000078729.1;Note=catalyzes the fromation of N-acetyl-D-glucosamine and N-acetyl-D-glucosamine-6-phosphate from diacetylchitobiose-6-phosphate;gbkey=CDS;product=diacetylchitobiose-6-phosphate hydrolase;protein_id=WP_000078729.1;transl_table=11 NC_008258.1 RefSeq gene 1530772 1531530 . + . ID=gene1657;Name=SFV_RS08330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08330;old_locus_tag=SFV_1487 NC_008258.1 Protein Homology CDS 1530772 1531530 . + 0 ID=cds1627;Parent=gene1657;Dbxref=Genbank:WP_000440442.1;Name=WP_000440442.1;gbkey=CDS;product=chitooligosaccharide deacetylase;protein_id=WP_000440442.1;transl_table=11 NC_008258.1 RefSeq gene 1531577 1533838 . - . ID=gene1658;Name=katE;gbkey=Gene;gene=katE;gene_biotype=protein_coding;locus_tag=SFV_RS08335;old_locus_tag=SFV_1488 NC_008258.1 Protein Homology CDS 1531577 1533838 . - 0 ID=cds1628;Parent=gene1658;Dbxref=Genbank:WP_000077821.1;Name=WP_000077821.1;Note=Catalase HPII%3B monofunctional catalase that decomposes hydrogen peroxide into water and oxygen%3B serves to protect cells from the toxic effects of hydrogen peroxide;gbkey=CDS;gene=katE;product=hydroperoxidase II;protein_id=WP_000077821.1;transl_table=11 NC_008258.1 RefSeq gene 1534042 1534284 . + . ID=gene1659;Name=SFV_RS08340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08340;old_locus_tag=SFV_1489 NC_008258.1 Protein Homology CDS 1534042 1534284 . + 0 ID=cds1629;Parent=gene1659;Dbxref=Genbank:WP_001295480.1;Name=WP_001295480.1;gbkey=CDS;product=cell division activator CedA;protein_id=WP_001295480.1;transl_table=11 NC_008258.1 RefSeq gene 1534572 1535376 . + . ID=gene1660;Name=SFV_RS08345;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08345;pseudo=true NC_008258.1 Protein Homology CDS 1534572 1535376 . + 0 ID=cds1630;Parent=gene1660;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1535380 1536770 . - . ID=gene1661;Name=SFV_RS08350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08350;pseudo=true NC_008258.1 Protein Homology CDS 1535380 1536770 . - 0 ID=cds1631;Parent=gene1661;exception=annotated by transcript or proteomic data;gbkey=CDS;product=L-cystine transporter tcyP;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1536903 1537493 . - . ID=gene1662;Name=SFV_RS08355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08355;old_locus_tag=SFV_1493 NC_008258.1 Protein Homology CDS 1536903 1537493 . - 0 ID=cds1632;Parent=gene1662;Dbxref=Genbank:WP_001297653.1;Name=WP_001297653.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297653.1;transl_table=11 NC_008258.1 RefSeq gene 1537656 1538324 . - . ID=gene1663;Name=SFV_RS08360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08360;old_locus_tag=SFV_1494 NC_008258.1 Protein Homology CDS 1537656 1538324 . - 0 ID=cds1633;Parent=gene1663;Dbxref=Genbank:WP_000106834.1;Name=WP_000106834.1;Note=YniC%3B catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate%2C mannose 6-phosphate and p-nitrophenyl phosphate;gbkey=CDS;product=2-deoxyglucose-6-phosphate phosphatase;protein_id=WP_000106834.1;transl_table=11 NC_008258.1 RefSeq gene 1538471 1539007 . + . ID=gene1664;Name=SFV_RS08365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08365;old_locus_tag=SFV_1495 NC_008258.1 Protein Homology CDS 1538471 1539007 . + 0 ID=cds1634;Parent=gene1664;Dbxref=Genbank:WP_000222164.1;Name=WP_000222164.1;gbkey=CDS;product=membrane protein;protein_id=WP_000222164.1;transl_table=11 NC_008258.1 RefSeq gene 1539048 1539908 . - . ID=gene1665;Name=SFV_RS08370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08370;old_locus_tag=SFV_1496 NC_008258.1 Protein Homology CDS 1539048 1539908 . - 0 ID=cds1635;Parent=gene1665;Dbxref=Genbank:WP_000267653.1;Name=WP_000267653.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000267653.1;transl_table=11 NC_008258.1 RefSeq gene 1540014 1540304 . - . ID=gene1666;Name=SFV_RS08375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08375;old_locus_tag=SFV_1497 NC_008258.1 Protein Homology CDS 1540014 1540304 . - 0 ID=cds1636;Parent=gene1666;Dbxref=Genbank:WP_000146138.1;Name=WP_000146138.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000146138.1;transl_table=11 NC_008258.1 RefSeq gene 1540405 1541334 . - . ID=gene1667;Name=SFV_RS08380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08380;old_locus_tag=SFV_1498 NC_008258.1 Protein Homology CDS 1540405 1541334 . - 0 ID=cds1637;Parent=gene1667;Dbxref=Genbank:WP_000251735.1;Name=WP_000251735.1;gbkey=CDS;product=6-phosphofructokinase;protein_id=WP_000251735.1;transl_table=11 NC_008258.1 RefSeq gene 1541621 1542379 . + . ID=gene1668;Name=SFV_RS08385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08385;old_locus_tag=SFV_1499 NC_008258.1 Protein Homology CDS 1541621 1542379 . + 0 ID=cds1638;Parent=gene1668;Dbxref=Genbank:WP_000771396.1;Name=WP_000771396.1;gbkey=CDS;product=membrane protein;protein_id=WP_000771396.1;transl_table=11 NC_008258.1 RefSeq gene 1542432 1542539 . - . ID=gene1669;Name=SFV_RS08390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08390 NC_008258.1 Protein Homology CDS 1542432 1542539 . - 0 ID=cds1639;Parent=gene1669;Dbxref=Genbank:WP_001142445.1;Name=WP_001142445.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001142445.1;transl_table=11 NC_008258.1 RefSeq gene 1542711 1543356 . - . ID=gene1670;Name=SFV_RS08395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08395;pseudo=true NC_008258.1 Protein Homology CDS 1542711 1543356 . - 0 ID=cds1640;Parent=gene1670;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ankyrin;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1543342 1544123 . + . ID=id241;gbkey=repeat_region NC_008258.1 RefSeq region 1543351 1544118 . - . ID=id242;gbkey=mobile_element NC_008258.1 RefSeq gene 1543366 1543761 . - . ID=gene1671;Name=SFV_RS08400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08400;old_locus_tag=SFV_1501 NC_008258.1 Protein Homology CDS 1543366 1543761 . - 0 ID=cds1641;Parent=gene1671;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 1543788 1544012 . - . ID=gene1672;Name=SFV_RS08405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08405 NC_008258.1 Protein Homology CDS 1543788 1544012 . - 0 ID=cds1642;Parent=gene1672;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1545022 1546950 . + . ID=gene1673;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=SFV_RS08410;old_locus_tag=SFV_1504 NC_008258.1 Protein Homology CDS 1545022 1546950 . + 0 ID=cds1643;Parent=gene1673;Dbxref=Genbank:WP_001144202.1;Name=WP_001144202.1;Note=catalyzes a two-step reaction%2C first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr);gbkey=CDS;gene=thrS;product=threonine--tRNA ligase;protein_id=WP_001144202.1;transl_table=11 NC_008258.1 RefSeq gene 1546954 1547496 . + . ID=gene1674;Name=SFV_RS08415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08415 NC_008258.1 Protein Homology CDS 1546954 1547496 . + 0 ID=cds1644;Parent=gene1674;Dbxref=Genbank:WP_044023908.1;Name=WP_044023908.1;gbkey=CDS;product=translation initiation factor IF-3;protein_id=WP_044023908.1;transl_table=11 NC_008258.1 RefSeq gene 1547593 1547790 . + . ID=gene1675;Name=SFV_RS08420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08420;old_locus_tag=SFV_1506 NC_008258.1 Protein Homology CDS 1547593 1547790 . + 0 ID=cds1645;Parent=gene1675;Dbxref=Genbank:WP_001124225.1;Name=WP_001124225.1;gbkey=CDS;product=50S ribosomal protein L35;protein_id=WP_001124225.1;transl_table=11 NC_008258.1 RefSeq gene 1547843 1548199 . + . ID=gene1676;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=SFV_RS08425;old_locus_tag=SFV_1507 NC_008258.1 Protein Homology CDS 1547843 1548199 . + 0 ID=cds1646;Parent=gene1676;Dbxref=Genbank:WP_000124854.1;Name=WP_000124854.1;Note=binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit;gbkey=CDS;gene=rplT;product=50S ribosomal protein L20;protein_id=WP_000124854.1;transl_table=11 NC_008258.1 RefSeq gene 1548441 1548535 . + . ID=gene1677;Name=SFV_RS08430;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08430;pseudo=true NC_008258.1 Protein Homology CDS 1548441 1548535 . + 0 ID=cds1647;Parent=gene1677;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1548649 1549632 . + . ID=gene1678;Name=SFV_RS08435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08435;old_locus_tag=SFV_1509 NC_008258.1 Protein Homology CDS 1548649 1549632 . + 0 ID=cds1648;Parent=gene1678;Dbxref=Genbank:WP_000018588.1;Name=WP_000018588.1;gbkey=CDS;product=phenylalanine--tRNA ligase subunit alpha;protein_id=WP_000018588.1;transl_table=11 NC_008258.1 RefSeq gene 1549647 1552034 . + . ID=gene1679;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=SFV_RS08440;old_locus_tag=SFV_1510 NC_008258.1 Protein Homology CDS 1549647 1552034 . + 0 ID=cds1649;Parent=gene1679;Dbxref=Genbank:WP_000672419.1;Name=WP_000672419.1;Note=catalyzes a two-step reaction%2C first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B forms a tetramer of alpha(2)beta(2)%3B binds two magnesium ions per tetramer%3B type 2 subfamily;gbkey=CDS;gene=pheT;product=phenylalanine--tRNA ligase subunit beta;protein_id=WP_000672419.1;transl_table=11 NC_008258.1 RefSeq gene 1552039 1552338 . + . ID=gene1680;Name=ihfA;gbkey=Gene;gene=ihfA;gene_biotype=protein_coding;locus_tag=SFV_RS08445;old_locus_tag=SFV_1511 NC_008258.1 Protein Homology CDS 1552039 1552338 . + 0 ID=cds1650;Parent=gene1680;Dbxref=Genbank:WP_001229265.1;Name=WP_001229265.1;Note=This protein is one of the two subunits of integration host factor%2C a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control;gbkey=CDS;gene=ihfA;product=integration host factor subunit alpha;protein_id=WP_001229265.1;transl_table=11 NC_008258.1 RefSeq gene 1552439 1553419 . + . ID=gene1681;Name=SFV_RS08450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08450;old_locus_tag=SFV_1512 NC_008258.1 Protein Homology CDS 1552439 1553419 . + 0 ID=cds1651;Parent=gene1681;Dbxref=Genbank:WP_000956993.1;Name=WP_000956993.1;Note=with BtuD and BtuF transports vitamin B12 into the cell;gbkey=CDS;product=vitamin B12 import system permease BtuC;protein_id=WP_000956993.1;transl_table=11 NC_008258.1 RefSeq gene 1553482 1554033 . + . ID=gene1682;Name=btuE;gbkey=Gene;gene=btuE;gene_biotype=protein_coding;locus_tag=SFV_RS08455;old_locus_tag=SFV_1513 NC_008258.1 Protein Homology CDS 1553482 1554033 . + 0 ID=cds1652;Parent=gene1682;Dbxref=Genbank:WP_001154183.1;Name=WP_001154183.1;Note=similar to glutathione peroxidase%3B member of the btuCED operon which is required for vitamin B12 transport across the inner membrane;gbkey=CDS;gene=btuE;product=glutathione peroxidase;protein_id=WP_001154183.1;transl_table=11 NC_008258.1 RefSeq gene 1554033 1554782 . + . ID=gene1683;Name=SFV_RS08460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08460;old_locus_tag=SFV_1514 NC_008258.1 Protein Homology CDS 1554033 1554782 . + 0 ID=cds1653;Parent=gene1683;Dbxref=Genbank:WP_000029466.1;Name=WP_000029466.1;Note=ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell;gbkey=CDS;product=vitamin B12 import ATP-binding protein BtuD;protein_id=WP_000029466.1;transl_table=11 NC_008258.1 RefSeq gene 1554860 1555324 . + . ID=gene1684;Name=SFV_RS08465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08465;old_locus_tag=SFV_1515 NC_008258.1 Protein Homology CDS 1554860 1555324 . + 0 ID=cds1654;Parent=gene1684;Dbxref=Genbank:WP_001209775.1;Name=WP_001209775.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001209775.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1555459 1556891 . + . ID=id243;gbkey=repeat_region NC_008258.1 RefSeq region 1555461 1556888 . - . ID=id244;gbkey=mobile_element NC_008258.1 RefSeq gene 1555475 1556803 . - . ID=gene1685;Name=SFV_RS08470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08470;old_locus_tag=SFV_1516 NC_008258.1 Protein Homology CDS 1555475 1556803 . - 0 ID=cds1655;Parent=gene1685;Dbxref=Genbank:WP_000547021.1;Name=WP_000547021.1;gbkey=CDS;product=transposase;protein_id=WP_000547021.1;transl_table=11 NC_008258.1 RefSeq gene 1557009 1557722 . + . ID=gene1686;Name=SFV_RS08475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08475;old_locus_tag=SFV_1517 NC_008258.1 Protein Homology CDS 1557009 1557722 . + 0 ID=cds1656;Parent=gene1686;Dbxref=Genbank:WP_005062637.1;Name=WP_005062637.1;gbkey=CDS;product=cyclic di-GMP regulator CdgR;protein_id=WP_005062637.1;transl_table=11 NC_008258.1 RefSeq gene 1557786 1559222 . + . ID=gene1687;Name=SFV_RS08480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08480;old_locus_tag=SFV_1518 NC_008258.1 Protein Homology CDS 1557786 1559222 . + 0 ID=cds1657;Parent=gene1687;Dbxref=Genbank:WP_024260270.1;Name=WP_024260270.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260270.1;transl_table=11 NC_008258.1 RefSeq gene 1559226 1559417 . - . ID=gene1688;Name=SFV_RS08485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08485;old_locus_tag=SFV_1519 NC_008258.1 Protein Homology CDS 1559226 1559417 . - 0 ID=cds1658;Parent=gene1688;Dbxref=Genbank:WP_001270810.1;Name=WP_001270810.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001270810.1;transl_table=11 NC_008258.1 RefSeq gene 1559549 1560595 . - . ID=gene1689;Name=SFV_RS08490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08490;old_locus_tag=SFV_1520 NC_008258.1 Protein Homology CDS 1559549 1560595 . - 0 ID=cds1659;Parent=gene1689;Dbxref=Genbank:WP_001082206.1;Name=WP_001082206.1;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_001082206.1;transl_table=11 NC_008258.1 RefSeq gene 1560752 1561585 . - . ID=gene1690;Name=SFV_RS08495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08495;old_locus_tag=SFV_1521 NC_008258.1 Protein Homology CDS 1560752 1561585 . - 0 ID=cds1660;Parent=gene1690;Dbxref=Genbank:WP_000368046.1;Name=WP_000368046.1;gbkey=CDS;product=phosphoenolpyruvate synthase regulatory protein;protein_id=WP_000368046.1;transl_table=11 NC_008258.1 RefSeq gene 1561696 1561863 . + . ID=gene1691;Name=SFV_RS08500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08500 NC_008258.1 Protein Homology CDS 1561696 1561863 . + 0 ID=cds1661;Parent=gene1691;Dbxref=Genbank:WP_001297382.1;Name=WP_001297382.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297382.1;transl_table=11 NC_008258.1 RefSeq gene 1561917 1564295 . + . ID=gene1692;Name=SFV_RS08505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08505;old_locus_tag=SFV_1522 NC_008258.1 Protein Homology CDS 1561917 1564295 . + 0 ID=cds1662;Parent=gene1692;Dbxref=Genbank:WP_000069384.1;Name=WP_000069384.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=phosphoenolpyruvate synthase;protein_id=WP_000069384.1;transl_table=11 NC_008258.1 RefSeq gene 1564352 1565998 . - . ID=gene1693;Name=SFV_RS08510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08510;old_locus_tag=SFV_1523 NC_008258.1 Protein Homology CDS 1564352 1565998 . - 0 ID=cds1663;Parent=gene1693;Dbxref=Genbank:WP_011587223.1;Name=WP_011587223.1;Note=acts in anaerobic beta-oxidation of fatty acids%3B possible ligase/synthase involved in anaerobic growth on fatty acids;gbkey=CDS;product=short chain acyl-CoA synthetase;protein_id=WP_011587223.1;transl_table=11 NC_008258.1 RefSeq gene 1566055 1566348 . - . ID=gene1694;Name=SFV_RS08515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08515;old_locus_tag=SFV_1524 NC_008258.1 Protein Homology CDS 1566055 1566348 . - 0 ID=cds1664;Parent=gene1694;Dbxref=Genbank:WP_000081083.1;Name=WP_000081083.1;gbkey=CDS;product=ferredoxin ydiT;protein_id=WP_000081083.1;transl_table=11 NC_008258.1 RefSeq gene 1566345 1567634 . - . ID=gene1695;Name=SFV_RS08520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08520;old_locus_tag=SFV_1525 NC_008258.1 Protein Homology CDS 1566345 1567634 . - 0 ID=cds1665;Parent=gene1695;Dbxref=Genbank:WP_001278524.1;Name=WP_001278524.1;Note=FAD/NAD(P)-binding domain%3B possibly part of an electron transfer system required for anaerobic carnitine reduction;gbkey=CDS;product=oxidoreductase;protein_id=WP_001278524.1;transl_table=11 NC_008258.1 RefSeq gene 1567690 1568628 . - . ID=gene1696;Name=fixB;gbkey=Gene;gene=fixB;gene_biotype=protein_coding;locus_tag=SFV_RS08525;old_locus_tag=SFV_1526 NC_008258.1 Protein Homology CDS 1567690 1568628 . - 0 ID=cds1666;Parent=gene1696;Dbxref=Genbank:WP_000080679.1;Name=WP_000080679.1;Note=involved in electron transfer during carnitine metabolism;gbkey=CDS;gene=fixB;product=electron transfer flavoprotein subunit alpha;protein_id=WP_000080679.1;transl_table=11 NC_008258.1 RefSeq gene 1568648 1569412 . - . ID=gene1697;Name=SFV_RS08530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08530;old_locus_tag=SFV_1527 NC_008258.1 Protein Homology CDS 1568648 1569412 . - 0 ID=cds1667;Parent=gene1697;Dbxref=Genbank:WP_000692129.1;Name=WP_000692129.1;gbkey=CDS;product=electron transfer flavoprotein FixB;protein_id=WP_000692129.1;transl_table=11 NC_008258.1 RefSeq gene 1569449 1569631 . + . ID=gene1698;Name=SFV_RS08535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08535 NC_008258.1 Protein Homology CDS 1569449 1569631 . + 0 ID=cds1668;Parent=gene1698;Dbxref=Genbank:WP_000398614.1;Name=WP_000398614.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000398614.1;transl_table=11 NC_008258.1 RefSeq gene 1569734 1570213 . + . ID=gene1699;Name=SFV_RS08540;end_range=1570213,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08540;old_locus_tag=SFV_1528;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1569734 1570213 . + 0 ID=cds1669;Parent=gene1699;end_range=1570213,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=AraC family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1570209 1570987 . + . ID=id245;gbkey=repeat_region NC_008258.1 RefSeq region 1570213 1570980 . + . ID=id246;gbkey=mobile_element NC_008258.1 RefSeq gene 1570462 1570965 . + . ID=gene1700;Name=SFV_RS08545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08545;old_locus_tag=SFV_1530 NC_008258.1 Protein Homology CDS 1570462 1570965 . + 0 ID=cds1670;Parent=gene1700;Dbxref=Genbank:WP_005048937.1;Name=WP_005048937.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005048937.1;transl_table=11 NC_008258.1 RefSeq gene 1570959 1571126 . - . ID=gene1701;Name=SFV_RS24470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24470 NC_008258.1 Protein Homology CDS 1570959 1571126 . - 0 ID=cds1671;Parent=gene1701;Dbxref=Genbank:WP_005062520.1;Name=WP_005062520.1;gbkey=CDS;product=sulfatase;protein_id=WP_005062520.1;transl_table=11 NC_008258.1 RefSeq gene 1571528 1572289 . - . ID=gene1702;Name=SFV_RS08555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08555;old_locus_tag=SFV_1531 NC_008258.1 Protein Homology CDS 1571528 1572289 . - 0 ID=cds1672;Parent=gene1702;Dbxref=Genbank:WP_000060450.1;Name=WP_000060450.1;Note=regulates the cellular response to acid resistance;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_000060450.1;transl_table=11 NC_008258.1 RefSeq gene 1572357 1572560 . - . ID=gene1703;Name=SFV_RS08560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08560 NC_008258.1 Protein Homology CDS 1572357 1572560 . - 0 ID=cds1673;Parent=gene1703;Dbxref=Genbank:WP_000543383.1;Name=WP_000543383.1;gbkey=CDS;product=Two-protein-system connector protein SafA;protein_id=WP_000543383.1;transl_table=11 NC_008258.1 RefSeq gene 1572808 1575087 . - . ID=gene1704;Name=SFV_RS08565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08565;old_locus_tag=SFV_1532 NC_008258.1 Protein Homology CDS 1572808 1575087 . - 0 ID=cds1674;Parent=gene1704;Dbxref=Genbank:WP_000726665.1;Name=WP_000726665.1;Note=in Escherichia coli it may be involved in repression of type III secretion system (TTSS) genes of the host cell%3B involved with increased resistance to low pH%3B member of the prokaryotic molybdopterin-containing oxidoreductase family;gbkey=CDS;product=oxidoreductase;protein_id=WP_000726665.1;transl_table=11 NC_008258.1 RefSeq gene 1575421 1576170 . - . ID=gene1705;Name=SFV_RS08570;end_range=1576170,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08570;old_locus_tag=SFV_1533;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1575421 1576170 . - 0 ID=cds1675;Parent=gene1705;end_range=1576170,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=fimbrial protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1576168 1577865 . + . ID=id247;gbkey=repeat_region NC_008258.1 RefSeq region 1576171 1576938 . + . ID=id248;gbkey=mobile_element NC_008258.1 RefSeq gene 1576277 1576501 . + . ID=gene1706;Name=SFV_RS08575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08575 NC_008258.1 Protein Homology CDS 1576277 1576501 . + 0 ID=cds1676;Parent=gene1706;Dbxref=Genbank:WP_001243682.1;Name=WP_001243682.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001243682.1;transl_table=11 NC_008258.1 RefSeq gene 1576528 1576923 . + . ID=gene1707;Name=SFV_RS08580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08580 NC_008258.1 Protein Homology CDS 1576528 1576923 . + 0 ID=cds1677;Parent=gene1707;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq region 1576939 1577862 . + . ID=id249;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1577106 1577819 . + . ID=gene1708;Name=SFV_RS08585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08585;old_locus_tag=SFV_1536 NC_008258.1 Protein Homology CDS 1577106 1577819 . + 0 ID=cds1678;Parent=gene1708;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1577844 1578023 . - . ID=gene1709;Name=SFV_RS08590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08590 NC_008258.1 Protein Homology CDS 1577844 1578023 . - 0 ID=cds1679;Parent=gene1709;Dbxref=Genbank:WP_000372594.1;Name=WP_000372594.1;gbkey=CDS;product=holin;protein_id=WP_000372594.1;transl_table=11 NC_008258.1 RefSeq gene 1578331 1578519 . - . ID=gene1710;Name=SFV_RS08595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08595;old_locus_tag=SFV_1537 NC_008258.1 Protein Homology CDS 1578331 1578519 . - 0 ID=cds1680;Parent=gene1710;Dbxref=Genbank:WP_000874243.1;Name=WP_000874243.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000874243.1;transl_table=11 NC_008258.1 RefSeq gene 1578779 1579114 . + . ID=gene1711;Name=SFV_RS08600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08600 NC_008258.1 Protein Homology CDS 1578779 1579114 . + 0 ID=cds1681;Parent=gene1711;Dbxref=Genbank:WP_000871291.1;Name=WP_000871291.1;Note=interacts RssB preventing the degradation of the stress sigma factor RpoS;gbkey=CDS;product=anti-adapter protein IraM;protein_id=WP_000871291.1;transl_table=11 NC_008258.1 RefSeq gene 1579309 1579401 . - . ID=gene1712;Name=SFV_RS24475;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24475;partial=true;pseudo=true;start_range=.,1579309 NC_008258.1 Protein Homology CDS 1579309 1579401 . - 0 ID=cds1682;Parent=gene1712;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1579309;transl_table=11 NC_008258.1 RefSeq gene 1579562 1579888 . - . ID=gene1713;Name=SFV_RS08610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08610 NC_008258.1 Protein Homology CDS 1579562 1579888 . - 0 ID=cds1683;Parent=gene1713;Dbxref=Genbank:WP_049760318.1;Name=WP_049760318.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_049760318.1;transl_table=11 NC_008258.1 RefSeq gene 1580026 1580102 . - . ID=gene1714;Name=SFV_RS08615;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS08615;old_locus_tag=SFV_1538 NC_008258.1 tRNAscan-SE tRNA 1580026 1580102 . - . ID=rna30;Parent=gene1714;anticodon=(pos:complement(1580066..1580068));gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 1580026 1580102 . - . ID=id250;Parent=rna30;anticodon=(pos:complement(1580066..1580068));gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 1580204 1580279 . - . ID=gene1715;Name=SFV_RS08620;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS08620;old_locus_tag=SFV_1539 NC_008258.1 tRNAscan-SE tRNA 1580204 1580279 . - . ID=rna31;Parent=gene1715;anticodon=(pos:complement(1580244..1580246));gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 1580204 1580279 . - . ID=id251;Parent=rna31;anticodon=(pos:complement(1580244..1580246));gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 1580423 1581244 . - . ID=gene1716;Name=SFV_RS08625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08625;pseudo=true NC_008258.1 Protein Homology CDS 1580423 1581244 . - 0 ID=cds1684;Parent=gene1716;gbkey=CDS;product=antitermination protein;pseudo=true;transl_except=(pos:complement(1580777..1580779)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1581259 1581615 . - . ID=gene1717;Name=SFV_RS08630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08630;old_locus_tag=SFV_1541 NC_008258.1 Protein Homology CDS 1581259 1581615 . - 0 ID=cds1685;Parent=gene1717;Dbxref=Genbank:WP_000904111.1;Name=WP_000904111.1;gbkey=CDS;product=endodeoxyribonuclease;protein_id=WP_000904111.1;transl_table=11 NC_008258.1 RefSeq gene 1581628 1582678 . - . ID=gene1718;Name=SFV_RS08635;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08635;pseudo=true NC_008258.1 Protein Homology CDS 1581628 1582678 . - 0 ID=cds1686;Parent=gene1718;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1581938 1582766 . + . ID=id252;gbkey=repeat_region NC_008258.1 RefSeq gene 1582680 1582958 . - . ID=gene1719;Name=SFV_RS08640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08640;pseudo=true NC_008258.1 Protein Homology CDS 1582680 1582958 . - 0 ID=cds1687;Parent=gene1719;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1582758..1582760)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1583025 1583276 . - . ID=gene1720;Name=SFV_RS08645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08645;old_locus_tag=SFV_1543 NC_008258.1 Protein Homology CDS 1583025 1583276 . - 0 ID=cds1688;Parent=gene1720;Dbxref=Genbank:WP_000980987.1;Name=WP_000980987.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000980987.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1583405 1583663 . + . ID=id253;gbkey=repeat_region NC_008258.1 RefSeq gene 1583494 1583649 . - . ID=gene1721;Name=SFV_RS08650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08650 NC_008258.1 Protein Homology CDS 1583494 1583649 . - 0 ID=cds1689;Parent=gene1721;Dbxref=Genbank:WP_000813254.1;Name=WP_000813254.1;gbkey=CDS;product=protein HokD;protein_id=WP_000813254.1;transl_table=11 NC_008258.1 RefSeq gene 1583721 1584008 . - . ID=gene1722;Name=SFV_RS08655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08655 NC_008258.1 Protein Homology CDS 1583721 1584008 . - 0 ID=cds1690;Parent=gene1722;Dbxref=Genbank:WP_000323025.1;Name=WP_000323025.1;gbkey=CDS;product=mRNA interferase RelE;protein_id=WP_000323025.1;transl_table=11 NC_008258.1 RefSeq gene 1584008 1584247 . - . ID=gene1723;Name=SFV_RS08660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08660;old_locus_tag=SFV_1544 NC_008258.1 Protein Homology CDS 1584008 1584247 . - 0 ID=cds1691;Parent=gene1723;Dbxref=Genbank:WP_000534858.1;Name=WP_000534858.1;Note=Qin prophage%3B bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/transcriptional repressor;gbkey=CDS;product=antitoxin RelB;protein_id=WP_000534858.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1584527 1585797 . + . ID=id254;gbkey=repeat_region NC_008258.1 RefSeq region 1584531 1585794 . - . ID=id255;gbkey=mobile_element NC_008258.1 RefSeq gene 1584574 1585287 . - . ID=gene1724;Name=SFV_RS08665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08665;old_locus_tag=SFV_1545 NC_008258.1 Protein Homology CDS 1584574 1585287 . - 0 ID=cds1692;Parent=gene1724;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1585428 1585730 . - . ID=gene1725;Name=SFV_RS08670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08670;old_locus_tag=SFV_1546 NC_008258.1 Protein Homology CDS 1585428 1585730 . - 0 ID=cds1693;Parent=gene1725;Dbxref=Genbank:WP_000088261.1;Name=WP_000088261.1;gbkey=CDS;product=transposase;protein_id=WP_000088261.1;transl_table=11 NC_008258.1 RefSeq gene 1585807 1586811 . + . ID=gene1726;Name=SFV_RS08675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08675;old_locus_tag=SFV_1547 NC_008258.1 Protein Homology CDS 1585807 1586811 . + 0 ID=cds1694;Parent=gene1726;Dbxref=Genbank:WP_005105449.1;Name=WP_005105449.1;gbkey=CDS;product=symporter;protein_id=WP_005105449.1;transl_table=11 NC_008258.1 RefSeq gene 1586900 1588360 . + . ID=gene1727;Name=SFV_RS08680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08680;old_locus_tag=SFV_1548 NC_008258.1 Protein Homology CDS 1586900 1588360 . + 0 ID=cds1695;Parent=gene1727;Dbxref=Genbank:WP_000527766.1;Name=WP_000527766.1;gbkey=CDS;product=D-mannonate oxidoreductase;protein_id=WP_000527766.1;transl_table=11 NC_008258.1 RefSeq gene 1588396 1588599 . - . ID=gene1728;Name=SFV_RS08685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08685;old_locus_tag=SFV_1549 NC_008258.1 Protein Homology CDS 1588396 1588599 . - 0 ID=cds1696;Parent=gene1728;Dbxref=Genbank:WP_000214712.1;Name=WP_000214712.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000214712.1;transl_table=11 NC_008258.1 RefSeq gene 1588777 1589415 . - . ID=gene1729;Name=SFV_RS08690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08690;old_locus_tag=SFV_1550 NC_008258.1 Protein Homology CDS 1588777 1589415 . - 0 ID=cds1697;Parent=gene1729;Dbxref=Genbank:WP_011069375.1;Name=WP_011069375.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_011069375.1;transl_table=11 NC_008258.1 RefSeq gene 1589552 1590298 . - . ID=gene1730;Name=SFV_RS08695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08695;old_locus_tag=SFV_1551 NC_008258.1 Protein Homology CDS 1589552 1590298 . - 0 ID=cds1698;Parent=gene1730;Dbxref=Genbank:WP_011069376.1;Name=WP_011069376.1;Note=NADP(+)-dependent%3B catalyzes the formation of 3-hydroxypropionate from the toxic malonic semialdehyde%2C catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine%3B can also use 3-hydroxybutyrate%2C 3-hydroxy-isobutyrate%2C D-threonine%2C L-allo-threonine%2CD-serine;gbkey=CDS;product=NADP-dependent L-serine/L-allo-threonine dehydrogenase YdfG;protein_id=WP_011069376.1;transl_table=11 NC_008258.1 RefSeq gene 1590435 1592480 . + . ID=gene1731;Name=SFV_RS08700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08700;old_locus_tag=SFV_1552 NC_008258.1 Protein Homology CDS 1590435 1592480 . + 0 ID=cds1699;Parent=gene1731;Dbxref=Genbank:WP_005068122.1;Name=WP_005068122.1;gbkey=CDS;product=dipeptidyl carboxypeptidase II;protein_id=WP_005068122.1;transl_table=11 NC_008258.1 RefSeq gene 1592525 1593043 . - . ID=gene1732;Name=SFV_RS08705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08705;old_locus_tag=SFV_1553 NC_008258.1 Protein Homology CDS 1592525 1593043 . - 0 ID=cds1700;Parent=gene1732;Dbxref=Genbank:WP_001024562.1;Name=WP_001024562.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001024562.1;transl_table=11 NC_008258.1 RefSeq gene 1593319 1593543 . + . ID=gene1733;Name=SFV_RS08710;end_range=1593543,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08710;old_locus_tag=SFV_1554;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1593319 1593543 . + 0 ID=cds1701;Parent=gene1733;end_range=1593543,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1593543 1594811 . + . ID=id256;gbkey=repeat_region NC_008258.1 RefSeq region 1593545 1594808 . + . ID=id257;gbkey=mobile_element NC_008258.1 RefSeq gene 1593786 1593911 . + . ID=gene1734;Name=SFV_RS08715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08715;old_locus_tag=SFV_1555 NC_008258.1 Protein Homology CDS 1593786 1593911 . + 0 ID=cds1702;Parent=gene1734;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 1594052 1594765 . + . ID=gene1735;Name=SFV_RS08720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08720;old_locus_tag=SFV_1556 NC_008258.1 Protein Homology CDS 1594052 1594765 . + 0 ID=cds1703;Parent=gene1735;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 1594950 1595177 . + . ID=gene1736;Name=SFV_RS08725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08725 NC_008258.1 Protein Homology CDS 1594950 1595177 . + 0 ID=cds1704;Parent=gene1736;Dbxref=Genbank:WP_000520317.1;Name=WP_000520317.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000520317.1;transl_table=11 NC_008258.1 RefSeq gene 1595648 1596910 . - . ID=gene1737;Name=SFV_RS24480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24480;old_locus_tag=SFV_1557;partial=true;pseudo=true;start_range=.,1595648 NC_008258.1 Protein Homology CDS 1595648 1596910 . - 0 ID=cds1705;Parent=gene1737;gbkey=CDS;partial=true;product=dimethyl sulfoxide reductase;pseudo=true;start_range=.,1595648;transl_except=(pos:complement(1595939..1595941)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1596907 1597059 . - . ID=gene1738;Name=SFV_RS24485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24485 NC_008258.1 Protein Homology CDS 1596907 1597059 . - 0 ID=cds1706;Parent=gene1738;Dbxref=Genbank:WP_024260271.1;Name=WP_024260271.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_024260271.1;transl_table=11 NC_008258.1 RefSeq gene 1597258 1597563 . - . ID=gene1739;Name=SFV_RS08740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08740;old_locus_tag=SFV_1558 NC_008258.1 Protein Homology CDS 1597258 1597563 . - 0 ID=cds1707;Parent=gene1739;Dbxref=Genbank:WP_005050191.1;Name=WP_005050191.1;gbkey=CDS;product=membrane protein;protein_id=WP_005050191.1;transl_table=11 NC_008258.1 RefSeq gene 1597635 1598381 . + . ID=gene1740;Name=SFV_RS08745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08745;old_locus_tag=SFV_1559 NC_008258.1 Protein Homology CDS 1597635 1598381 . + 0 ID=cds1708;Parent=gene1740;Dbxref=Genbank:WP_000571984.1;Name=WP_000571984.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000571984.1;transl_table=11 NC_008258.1 RefSeq gene 1598384 1598913 . - . ID=gene1741;Name=SFV_RS08750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08750;pseudo=true NC_008258.1 Protein Homology CDS 1598384 1598913 . - 0 ID=cds1709;Parent=gene1741;Note=catalyzes the formation of N(1)- and N(8)-acetylspermidine from spermidine;exception=annotated by transcript or proteomic data;gbkey=CDS;product=spermidine acetyltransferase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1598979 1599320 . - . ID=gene1742;Name=SFV_RS08755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08755;old_locus_tag=SFV_1561 NC_008258.1 Protein Homology CDS 1598979 1599320 . - 0 ID=cds1710;Parent=gene1742;Dbxref=Genbank:WP_000705197.1;Name=WP_000705197.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000705197.1;transl_table=11 NC_008258.1 RefSeq gene 1599455 1599781 . + . ID=gene1743;Name=SFV_RS08760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08760;old_locus_tag=SFV_1562 NC_008258.1 Protein Homology CDS 1599455 1599781 . + 0 ID=cds1711;Parent=gene1743;Dbxref=Genbank:WP_001295395.1;Name=WP_001295395.1;gbkey=CDS;product=membrane protein;protein_id=WP_001295395.1;transl_table=11 NC_008258.1 RefSeq gene 1599987 1601201 . + . ID=gene1744;Name=SFV_RS08765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08765;old_locus_tag=SFV_1563 NC_008258.1 Protein Homology CDS 1599987 1601201 . + 0 ID=cds1712;Parent=gene1744;Dbxref=Genbank:WP_005105455.1;Name=WP_005105455.1;Note=starvation-sensing protein%3B maybe involved in homoserine lactone degradation;gbkey=CDS;product=bifunctional D-altronate/D-mannonate dehydratase;protein_id=WP_005105455.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1601215 1603099 . + . ID=id258;gbkey=repeat_region NC_008258.1 RefSeq gene 1601278 1601556 . + . ID=gene1745;Name=SFV_RS08770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08770;old_locus_tag=SFV_1564 NC_008258.1 Protein Homology CDS 1601278 1601556 . + 0 ID=cds1713;Parent=gene1745;Dbxref=Genbank:WP_000015533.1;Name=WP_000015533.1;gbkey=CDS;product=transposase;protein_id=WP_000015533.1;transl_table=11 NC_008258.1 RefSeq region 1601967 1603099 . - . ID=id259;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1601978 1602883 . - . ID=gene1746;Name=SFV_RS08775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08775;old_locus_tag=SFV_1565 NC_008258.1 Protein Homology CDS 1601978 1602883 . - 0 ID=cds1714;Parent=gene1746;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 1602841 1603026 . - . ID=gene1747;Name=SFV_RS08780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08780;old_locus_tag=SFV_1566 NC_008258.1 Protein Homology CDS 1602841 1603026 . - 0 ID=cds1715;Parent=gene1747;Dbxref=Genbank:WP_000718751.1;Name=WP_000718751.1;gbkey=CDS;product=transposase;protein_id=WP_000718751.1;transl_table=11 NC_008258.1 RefSeq gene 1603315 1604268 . - . ID=gene1748;Name=SFV_RS08785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08785;old_locus_tag=SFV_1567 NC_008258.1 Protein Homology CDS 1603315 1604268 . - 0 ID=cds1716;Parent=gene1748;Dbxref=Genbank:WP_000154339.1;Name=WP_000154339.1;Note=regulates the transcription of lsr genes%3B involved in autoinducer 2 uptake%2C biofilm formation and stress responses;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000154339.1;transl_table=11 NC_008258.1 RefSeq gene 1604517 1606052 . + . ID=gene1749;Name=SFV_RS08790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08790;old_locus_tag=SFV_1568 NC_008258.1 Protein Homology CDS 1604517 1606052 . + 0 ID=cds1717;Parent=gene1749;Dbxref=Genbank:WP_001194877.1;Name=WP_001194877.1;gbkey=CDS;product=autoinducer 2 import ATP-binding protein LsrA;protein_id=WP_001194877.1;transl_table=11 NC_008258.1 RefSeq gene 1606046 1607074 . + . ID=gene1750;Name=SFV_RS08795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08795;old_locus_tag=SFV_1569 NC_008258.1 Protein Homology CDS 1606046 1607074 . + 0 ID=cds1718;Parent=gene1750;Dbxref=Genbank:WP_000911162.1;Name=WP_000911162.1;Note=with LsrADB is involved in the transport of autoindiuce 2;gbkey=CDS;product=autoinducer 2 import system permease LsrC;protein_id=WP_000911162.1;transl_table=11 NC_008258.1 RefSeq gene 1607074 1608066 . + . ID=gene1751;Name=SFV_RS08800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08800;old_locus_tag=SFV_1570 NC_008258.1 Protein Homology CDS 1607074 1608066 . + 0 ID=cds1719;Parent=gene1751;Dbxref=Genbank:WP_001222721.1;Name=WP_001222721.1;gbkey=CDS;product=autoinducer 2 import system permease LsrD;protein_id=WP_001222721.1;transl_table=11 NC_008258.1 RefSeq gene 1608078 1609101 . + . ID=gene1752;Name=SFV_RS08805;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08805;pseudo=true NC_008258.1 Protein Homology CDS 1608078 1609101 . + 0 ID=cds1720;Parent=gene1752;Note=with lsrACD is involved in the transport of autoinducer 2 into the cell;exception=annotated by transcript or proteomic data;gbkey=CDS;product=autoinducer 2-binding protein lsrB;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1609223 1610557 . + . ID=id260;gbkey=repeat_region NC_008258.1 RefSeq gene 1609316 1609681 . + . ID=gene1753;Name=SFV_RS08810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08810;old_locus_tag=SFV_1572 NC_008258.1 Protein Homology CDS 1609316 1609681 . + 0 ID=cds1721;Parent=gene1753;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1609639 1610544 . + . ID=gene1754;Name=SFV_RS08815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08815;old_locus_tag=SFV_1573 NC_008258.1 Protein Homology CDS 1609639 1610544 . + 0 ID=cds1722;Parent=gene1754;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 1610569 1611339 . + . ID=gene1755;Name=SFV_RS08820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08820;old_locus_tag=SFV_1574 NC_008258.1 Protein Homology CDS 1610569 1611339 . + 0 ID=cds1723;Parent=gene1755;Dbxref=Genbank:WP_001191843.1;Name=WP_001191843.1;gbkey=CDS;product=aldolase;protein_id=WP_001191843.1;transl_table=11 NC_008258.1 RefSeq gene 1611363 1611653 . + . ID=gene1756;Name=SFV_RS08825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08825;old_locus_tag=SFV_1575 NC_008258.1 Protein Homology CDS 1611363 1611653 . + 0 ID=cds1724;Parent=gene1756;Dbxref=Genbank:WP_000558531.1;Name=WP_000558531.1;gbkey=CDS;product=autoinducer 2-degrading protein LsrG;protein_id=WP_000558531.1;transl_table=11 NC_008258.1 RefSeq gene 1611693 1612451 . + . ID=gene1757;Name=SFV_RS08830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08830;old_locus_tag=SFV_1576 NC_008258.1 Protein Homology CDS 1611693 1612451 . + 0 ID=cds1725;Parent=gene1757;Dbxref=Genbank:WP_001286594.1;Name=WP_001286594.1;Note=catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate;gbkey=CDS;product=trans-aconitate 2-methyltransferase;protein_id=WP_001286594.1;transl_table=11 NC_008258.1 RefSeq gene 1612455 1613369 . - . ID=gene1758;Name=SFV_RS08835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08835;old_locus_tag=SFV_1577 NC_008258.1 Protein Homology CDS 1612455 1613369 . - 0 ID=cds1726;Parent=gene1758;Dbxref=Genbank:WP_005050130.1;Name=WP_005050130.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005050130.1;transl_table=11 NC_008258.1 RefSeq gene 1613319 1613453 . + . ID=gene1759;Name=SFV_RS08840;end_range=1613453,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08840;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1613319 1613453 . + 0 ID=cds1727;Parent=gene1759;end_range=1613453,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1613451 1615134 . + . ID=id261;gbkey=repeat_region NC_008258.1 RefSeq region 1613451 1615134 . + . ID=id262;gbkey=mobile_element NC_008258.1 RefSeq gene 1613570 1613758 . + . ID=gene1760;Name=SFV_RS08845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08845 NC_008258.1 Protein Homology CDS 1613570 1613758 . + 0 ID=cds1728;Parent=gene1760;Dbxref=Genbank:WP_000957855.1;Name=WP_000957855.1;gbkey=CDS;product=transposase;protein_id=WP_000957855.1;transl_table=11 NC_008258.1 RefSeq gene 1613768 1614688 . + . ID=gene1761;Name=SFV_RS08850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08850;old_locus_tag=SFV_1578 NC_008258.1 Protein Homology CDS 1613768 1614688 . + 0 ID=cds1729;Parent=gene1761;Dbxref=Genbank:WP_011069378.1;Name=WP_011069378.1;gbkey=CDS;product=transposase;protein_id=WP_011069378.1;transl_table=11 NC_008258.1 RefSeq gene 1615263 1616714 . - . ID=gene1762;Name=SFV_RS08855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08855;old_locus_tag=SFV_1580 NC_008258.1 Protein Homology CDS 1615263 1616714 . - 0 ID=cds1730;Parent=gene1762;Dbxref=Genbank:WP_000854635.1;Name=WP_000854635.1;Note=catalyzes the formation of D-tagaturonate from D-altronate;gbkey=CDS;product=altronate oxidoreductase;protein_id=WP_000854635.1;transl_table=11 NC_008258.1 RefSeq gene 1616941 1618359 . - . ID=gene1763;Name=SFV_RS08860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08860;old_locus_tag=SFV_1581 NC_008258.1 Protein Homology CDS 1616941 1618359 . - 0 ID=cds1731;Parent=gene1763;Dbxref=Genbank:WP_000558053.1;Name=WP_000558053.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_000558053.1;transl_table=11 NC_008258.1 RefSeq gene 1618498 1618857 . - . ID=gene1764;Name=SFV_RS08865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08865;old_locus_tag=SFV_1582 NC_008258.1 Protein Homology CDS 1618498 1618857 . - 0 ID=cds1732;Parent=gene1764;Dbxref=Genbank:WP_001191027.1;Name=WP_001191027.1;gbkey=CDS;product=DUF4186 domain-containing protein;protein_id=WP_001191027.1;transl_table=11 NC_008258.1 RefSeq gene 1618916 1619692 . - . ID=gene1765;Name=SFV_RS08870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08870;old_locus_tag=SFV_1583;partial=true;pseudo=true;start_range=.,1618916 NC_008258.1 Protein Homology CDS 1618916 1619692 . - 0 ID=cds1733;Parent=gene1765;Note=catalyzes the formation of glutamate from glutamine;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutaminase;pseudo=true;start_range=.,1618916;transl_table=11 NC_008258.1 RefSeq gene 1619756 1620763 . - . ID=gene1766;Name=SFV_RS08875;end_range=1620763,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08875;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1619756 1620763 . - 0 ID=cds1734;Parent=gene1766;end_range=1620763,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=succinate dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1620749 1621520 . + . ID=id263;gbkey=repeat_region NC_008258.1 RefSeq region 1620750 1621517 . + . ID=id264;gbkey=mobile_element NC_008258.1 RefSeq gene 1620856 1621080 . + . ID=gene1767;Name=SFV_RS08880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08880 NC_008258.1 Protein Homology CDS 1620856 1621080 . + 0 ID=cds1735;Parent=gene1767;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1620999 1621502 . + . ID=gene1768;Name=SFV_RS08885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08885;old_locus_tag=SFV_1586 NC_008258.1 Protein Homology CDS 1620999 1621502 . + 0 ID=cds1736;Parent=gene1768;Dbxref=Genbank:WP_005105461.1;Name=WP_005105461.1;gbkey=CDS;product=transposase;protein_id=WP_005105461.1;transl_table=11 NC_008258.1 RefSeq gene 1621572 1622687 . + . ID=gene1769;Name=SFV_RS08890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08890;old_locus_tag=SFV_1587 NC_008258.1 Protein Homology CDS 1621572 1622687 . + 0 ID=cds1737;Parent=gene1769;Dbxref=Genbank:WP_000258551.1;Name=WP_000258551.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000258551.1;transl_table=11 NC_008258.1 RefSeq gene 1622837 1624027 . + . ID=gene1770;Name=SFV_RS08895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08895;old_locus_tag=SFV_1588 NC_008258.1 Protein Homology CDS 1622837 1624027 . + 0 ID=cds1738;Parent=gene1770;Dbxref=Genbank:WP_000214841.1;Name=WP_000214841.1;gbkey=CDS;product=sugar efflux transporter;protein_id=WP_000214841.1;transl_table=11 NC_008258.1 RefSeq gene 1624052 1624717 . - . ID=gene1771;Name=SFV_RS08900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08900;old_locus_tag=SFV_1589 NC_008258.1 Protein Homology CDS 1624052 1624717 . - 0 ID=cds1739;Parent=gene1771;Dbxref=Genbank:WP_000885033.1;Name=WP_000885033.1;gbkey=CDS;product=membrane protein;protein_id=WP_000885033.1;transl_table=11 NC_008258.1 RefSeq gene 1624929 1625363 . + . ID=gene1772;Name=SFV_RS08905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08905;old_locus_tag=SFV_1590 NC_008258.1 Protein Homology CDS 1624929 1625363 . + 0 ID=cds1740;Parent=gene1772;Dbxref=Genbank:WP_000843419.1;Name=WP_000843419.1;Note=Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes;gbkey=CDS;product=MarR family transcriptional regulator;protein_id=WP_000843419.1;transl_table=11 NC_008258.1 RefSeq gene 1625377 1625766 . + . ID=gene1773;Name=SFV_RS08910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08910;old_locus_tag=SFV_1591 NC_008258.1 Protein Homology CDS 1625377 1625766 . + 0 ID=cds1741;Parent=gene1773;Dbxref=Genbank:WP_001307812.1;Name=WP_001307812.1;Note=transcriptional activator of genes involved in the multiple antibiotic resistance (Mar) phenotype%3B also activates sodA%2C zwf and micF;gbkey=CDS;product=MDR efflux pump AcrAB transcriptional activator MarA;protein_id=WP_001307812.1;transl_table=11 NC_008258.1 RefSeq gene 1625798 1626016 . + . ID=gene1774;Name=SFV_RS08915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08915;old_locus_tag=SFV_1592 NC_008258.1 Protein Homology CDS 1625798 1626016 . + 0 ID=cds1742;Parent=gene1774;Dbxref=Genbank:WP_000803659.1;Name=WP_000803659.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000803659.1;transl_table=11 NC_008258.1 RefSeq gene 1626047 1626946 . - . ID=gene1775;Name=SFV_RS08920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08920;old_locus_tag=SFV_1593 NC_008258.1 Protein Homology CDS 1626047 1626946 . - 0 ID=cds1743;Parent=gene1775;Dbxref=Genbank:WP_000087224.1;Name=WP_000087224.1;gbkey=CDS;product=O-acetylserine/cysteine export protein;protein_id=WP_000087224.1;transl_table=11 NC_008258.1 RefSeq gene 1627228 1628328 . + . ID=gene1776;Name=SFV_RS08925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08925;old_locus_tag=SFV_1594 NC_008258.1 Protein Homology CDS 1627228 1628328 . + 0 ID=cds1744;Parent=gene1776;Dbxref=Genbank:WP_005098599.1;Name=WP_005098599.1;Note=YdeF%3B uncharacterized member of the major facilitator superfamily (MFS) of transporters;gbkey=CDS;product=transporter;protein_id=WP_005098599.1;transl_table=11 NC_008258.1 RefSeq gene 1628455 1628550 . + . ID=gene1777;Name=SFV_RS08930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08930 NC_008258.1 Protein Homology CDS 1628455 1628550 . + 0 ID=cds1745;Parent=gene1777;Dbxref=Genbank:WP_000901367.1;Name=WP_000901367.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000901367.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1628754 1630021 . + . ID=id265;gbkey=repeat_region NC_008258.1 RefSeq region 1628756 1630019 . - . ID=id266;gbkey=mobile_element NC_008258.1 RefSeq gene 1628799 1629512 . - . ID=gene1778;Name=SFV_RS08935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08935;old_locus_tag=SFV_1595 NC_008258.1 Protein Homology CDS 1628799 1629512 . - 0 ID=cds1746;Parent=gene1778;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 1629653 1629778 . - . ID=gene1779;Name=SFV_RS08940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08940;old_locus_tag=SFV_1596 NC_008258.1 Protein Homology CDS 1629653 1629778 . - 0 ID=cds1747;Parent=gene1779;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 1630020 1630616 . - . ID=gene1780;Name=SFV_RS08945;end_range=1630616,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08945;old_locus_tag=SFV_1597;partial=true;pseudo=true;start_range=.,1630020 NC_008258.1 Protein Homology CDS 1630020 1630616 . - 0 ID=cds1748;Parent=gene1780;end_range=1630616,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1630020;transl_except=(pos:complement(1630593..1630595)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 1630645 1632728 . + . ID=id267;gbkey=repeat_region NC_008258.1 RefSeq region 1630646 1631421 . - . ID=id268;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1630728 1631402 . + . ID=gene1781;Name=SFV_RS08950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08950;old_locus_tag=SFV_1598 NC_008258.1 Protein Homology CDS 1630728 1631402 . + 0 ID=cds1749;Parent=gene1781;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq region 1631422 1632727 . + . ID=id269;gbkey=mobile_element NC_008258.1 RefSeq gene 1631476 1631802 . + . ID=gene1782;Name=SFV_RS08955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08955;old_locus_tag=SFV_1599 NC_008258.1 Protein Homology CDS 1631476 1631802 . + 0 ID=cds1750;Parent=gene1782;Dbxref=Genbank:WP_000165238.1;Name=WP_000165238.1;gbkey=CDS;product=transposase;protein_id=WP_000165238.1;transl_table=11 NC_008258.1 RefSeq gene 1631802 1632155 . + . ID=gene1783;Name=SFV_RS08960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08960 NC_008258.1 Protein Homology CDS 1631802 1632155 . + 0 ID=cds1751;Parent=gene1783;Dbxref=Genbank:WP_001129075.1;Name=WP_001129075.1;gbkey=CDS;product=transposase;protein_id=WP_001129075.1;transl_table=11 NC_008258.1 RefSeq gene 1632167 1632685 . + . ID=gene1784;Name=SFV_RS08965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08965 NC_008258.1 Protein Homology CDS 1632167 1632685 . + 0 ID=cds1752;Parent=gene1784;Dbxref=Genbank:WP_024260258.1;Name=WP_024260258.1;gbkey=CDS;product=transposase;protein_id=WP_024260258.1;transl_table=11 NC_008258.1 RefSeq gene 1632725 1633525 . - . ID=gene1785;Name=SFV_RS08970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08970;old_locus_tag=SFV_1602 NC_008258.1 Protein Homology CDS 1632725 1633525 . - 0 ID=cds1753;Parent=gene1785;Dbxref=Genbank:WP_005105463.1;Name=WP_005105463.1;gbkey=CDS;product=integrase;protein_id=WP_005105463.1;transl_table=11 NC_008258.1 RefSeq gene 1633571 1634617 . + . ID=gene1786;Name=SFV_RS08975;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08975;old_locus_tag=SFV_1601;partial=true;pseudo=true;start_range=.,1633571 NC_008258.1 Protein Homology CDS 1633571 1634617 . + 0 ID=cds1754;Parent=gene1786;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=dimethyl sulfoxide reductase;pseudo=true;start_range=.,1633571;transl_table=11 NC_008258.1 RefSeq gene 1634705 1636716 . + . ID=gene1787;Name=SFV_RS08980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08980;pseudo=true NC_008258.1 Protein Homology CDS 1634705 1636716 . + 0 ID=cds1755;Parent=gene1787;exception=annotated by transcript or proteomic data;gbkey=CDS;product=dimethyl sulfoxide reductase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1636727 1637344 . + . ID=gene1788;Name=SFV_RS08985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08985;old_locus_tag=SFV_1604 NC_008258.1 Protein Homology CDS 1636727 1637344 . + 0 ID=cds1756;Parent=gene1788;Dbxref=Genbank:WP_000213017.1;Name=WP_000213017.1;Note=oxidoreductase%2C Fe-S subunit%3B terminal electron transfer protein for the reduction of DMSO;gbkey=CDS;product=dimethyl sulfoxide reductase subunit B;protein_id=WP_000213017.1;transl_table=11 NC_008258.1 RefSeq gene 1637346 1638200 . + . ID=gene1789;Name=SFV_RS08990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS08990;old_locus_tag=SFV_1605 NC_008258.1 Protein Homology CDS 1637346 1638200 . + 0 ID=cds1757;Parent=gene1789;Dbxref=Genbank:WP_000526473.1;Name=WP_000526473.1;gbkey=CDS;product=dimethyl sulfoxide reductase subunit H;protein_id=WP_000526473.1;transl_table=11 NC_008258.1 RefSeq gene 1638243 1638857 . + . ID=gene1790;Name=SFV_RS08995;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS08995;pseudo=true NC_008258.1 Protein Homology CDS 1638243 1638857 . + 0 ID=cds1758;Parent=gene1790;Note=binds to the twin-arginine signal peptides of certain proteins%2C including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane;gbkey=CDS;product=twin-argninine leader-binding protein DmsD;pseudo=true;transl_except=(pos:1638456..1638458%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1639052 1640308 . + . ID=gene1791;Name=SFV_RS09000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09000;old_locus_tag=SFV_1607 NC_008258.1 Protein Homology CDS 1639052 1640308 . + 0 ID=cds1759;Parent=gene1791;Dbxref=Genbank:WP_024260274.1;Name=WP_024260274.1;gbkey=CDS;product=voltage-gated chloride channel protein ClcB;protein_id=WP_024260274.1;transl_table=11 NC_008258.1 RefSeq gene 1640261 1640956 . - . ID=gene1792;Name=SFV_RS09005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09005;old_locus_tag=SFV_1608 NC_008258.1 Protein Homology CDS 1640261 1640956 . - 0 ID=cds1760;Parent=gene1792;Dbxref=Genbank:WP_000919226.1;Name=WP_000919226.1;Note=DTB synthetase%3B dethiobiotin synthase%3B involved in production of dethiobiotin from ATP and 7%2C8-diaminononanoate and carbon dioxide%3B contains magnesium;gbkey=CDS;product=dithiobiotin synthetase;protein_id=WP_000919226.1;transl_table=11 NC_008258.1 RefSeq gene 1641081 1642301 . - . ID=gene1793;Name=SFV_RS09010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09010;old_locus_tag=SFV_1609 NC_008258.1 Protein Homology CDS 1641081 1642301 . - 0 ID=cds1761;Parent=gene1793;Dbxref=Genbank:WP_000225287.1;Name=WP_000225287.1;Note=mlc%2C controls the expression of genes involved in the phosphotransferase and phosphoenolpyruvate systems%2C regulates genes involved in the uptake of sugars;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000225287.1;transl_table=11 NC_008258.1 RefSeq gene 1642436 1643338 . - . ID=gene1794;Name=SFV_RS09015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09015;old_locus_tag=SFV_1610 NC_008258.1 Protein Homology CDS 1642436 1643338 . - 0 ID=cds1762;Parent=gene1794;Dbxref=Genbank:WP_001019540.1;Name=WP_001019540.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001019540.1;transl_table=11 NC_008258.1 RefSeq gene 1643445 1644698 . + . ID=gene1795;Name=SFV_RS09020;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09020;pseudo=true NC_008258.1 Protein Homology CDS 1643445 1644698 . + 0 ID=cds1763;Parent=gene1795;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:1644180..1644182%2Caa:Other),(pos:1644252..1644254%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1645095 1645430 . + . ID=gene1796;Name=SFV_RS09025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09025;old_locus_tag=SFV_1612 NC_008258.1 Protein Homology CDS 1645095 1645430 . + 0 ID=cds1764;Parent=gene1796;Dbxref=Genbank:WP_000743951.1;Name=WP_000743951.1;Note=required for growth and survival under moderately acid conditions;gbkey=CDS;product=acid-shock protein;protein_id=WP_000743951.1;transl_table=11 NC_008258.1 RefSeq gene 1645523 1645606 . + . ID=gene1797;Name=SFV_RS09030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09030 NC_008258.1 Protein Homology CDS 1645523 1645606 . + 0 ID=cds1765;Parent=gene1797;Dbxref=Genbank:WP_000233090.1;Name=WP_000233090.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000233090.1;transl_table=11 NC_008258.1 RefSeq gene 1645706 1646527 . + . ID=gene1798;Name=SFV_RS09035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09035;old_locus_tag=SFV_1613 NC_008258.1 Protein Homology CDS 1645706 1646527 . + 0 ID=cds1766;Parent=gene1798;Dbxref=Genbank:WP_001260855.1;Name=WP_001260855.1;gbkey=CDS;product=serine protease;protein_id=WP_001260855.1;transl_table=11 NC_008258.1 RefSeq gene 1646566 1646895 . - . ID=gene1799;Name=SFV_RS09040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09040;old_locus_tag=SFV_1614 NC_008258.1 Protein Homology CDS 1646566 1646895 . - 0 ID=cds1767;Parent=gene1799;Dbxref=Genbank:WP_000046661.1;Name=WP_000046661.1;Note=with MdtJ is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS;gbkey=CDS;product=spermidine export protein MdtI;protein_id=WP_000046661.1;transl_table=11 NC_008258.1 RefSeq gene 1646882 1647247 . - . ID=gene1800;Name=SFV_RS09045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09045;old_locus_tag=SFV_1615 NC_008258.1 Protein Homology CDS 1646882 1647247 . - 0 ID=cds1768;Parent=gene1800;Dbxref=Genbank:WP_000276149.1;Name=WP_000276149.1;Note=with MdtI is involved in resistance to deoxycholate%2C nalidixic acid%2C fosfomycin%2C and SDS;gbkey=CDS;product=spermidine export protein MdtJ;protein_id=WP_000276149.1;transl_table=11 NC_008258.1 RefSeq gene 1647658 1648692 . + . ID=gene1801;Name=tqsA;gbkey=Gene;gene=tqsA;gene_biotype=protein_coding;gene_synonym=ydgG;locus_tag=SFV_RS09050;old_locus_tag=SFV_1616 NC_008258.1 Protein Homology CDS 1647658 1648692 . + 0 ID=cds1769;Parent=gene1801;Dbxref=Genbank:WP_001118241.1;Name=WP_001118241.1;Note=transport of quorum-sensing signal%3B mutations in this gene alters the transport of the quorum-sensing signal autoinducer 2 (AI-2) which affects expression of a large number of genes;gbkey=CDS;gene=tqsA;product=AI-2 transporter TqsA;protein_id=WP_001118241.1;transl_table=11 NC_008258.1 RefSeq gene 1648717 1650105 . - . ID=gene1802;Name=pntB;gbkey=Gene;gene=pntB;gene_biotype=protein_coding;locus_tag=SFV_RS09055;old_locus_tag=SFV_1617 NC_008258.1 Protein Homology CDS 1648717 1650105 . - 0 ID=cds1770;Parent=gene1802;Dbxref=Genbank:WP_000014036.1;Name=WP_000014036.1;Note=catalyzes reversible transfer of hydride ion equivalent between NAD and NADP%3B membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane%3B forms a tetramer composed of two alpha and 2 beta subunits%3B AB-stereospecific enzyme;gbkey=CDS;gene=pntB;product=NAD(P) transhydrogenase subunit beta;protein_id=WP_000014036.1;transl_table=11 NC_008258.1 RefSeq gene 1650116 1651648 . - . ID=gene1803;Name=pntA;gbkey=Gene;gene=pntA;gene_biotype=protein_coding;locus_tag=SFV_RS09060;old_locus_tag=SFV_1618 NC_008258.1 Protein Homology CDS 1650116 1651648 . - 0 ID=cds1771;Parent=gene1803;Dbxref=Genbank:WP_005063005.1;Name=WP_005063005.1;Note=forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane%3B involved in catalyzing transfer of hydride ion equivalents between NAD and NADP%3B stereospecific (AB-specific)%3B functions as a proton pump by translocating protons from cytoplasm to periplasm;gbkey=CDS;gene=pntA;product=NAD(P) transhydrogenase subunit alpha;protein_id=WP_005063005.1;transl_table=11 NC_008258.1 RefSeq gene 1652172 1653116 . + . ID=gene1804;Name=SFV_RS09065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09065;old_locus_tag=SFV_1619 NC_008258.1 Protein Homology CDS 1652172 1653116 . + 0 ID=cds1772;Parent=gene1804;Dbxref=Genbank:WP_000769323.1;Name=WP_000769323.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000769323.1;transl_table=11 NC_008258.1 RefSeq gene 1653302 1654684 . + . ID=gene1805;Name=SFV_RS09070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09070;old_locus_tag=SFV_1620 NC_008258.1 Protein Homology CDS 1653302 1654684 . + 0 ID=cds1773;Parent=gene1805;Dbxref=Genbank:WP_000412379.1;Name=WP_000412379.1;gbkey=CDS;product=arginine/ornithine antiporter transporter;protein_id=WP_000412379.1;transl_table=11 NC_008258.1 RefSeq gene 1654721 1655443 . + . ID=gene1806;Name=SFV_RS09075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09075;old_locus_tag=SFV_1621 NC_008258.1 Protein Homology CDS 1654721 1655443 . + 0 ID=cds1774;Parent=gene1806;Dbxref=Genbank:WP_000520806.1;Name=WP_000520806.1;gbkey=CDS;product=dihydrofolate reductase FolM;protein_id=WP_000520806.1;transl_table=11 NC_008258.1 RefSeq gene 1655440 1655775 . - . ID=gene1807;Name=SFV_RS09080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09080;old_locus_tag=SFV_1622 NC_008258.1 Protein Homology CDS 1655440 1655775 . - 0 ID=cds1775;Parent=gene1807;Dbxref=Genbank:WP_000524868.1;Name=WP_000524868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000524868.1;transl_table=11 NC_008258.1 RefSeq gene 1655904 1656647 . + . ID=gene1808;Name=SFV_RS09085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09085;old_locus_tag=SFV_1623 NC_008258.1 Protein Homology CDS 1655904 1656647 . + 0 ID=cds1776;Parent=gene1808;Dbxref=Genbank:WP_005050251.1;Name=WP_005050251.1;Note=response regulator in two-component regulatory system with RstB;gbkey=CDS;product=two-component system response regulator;protein_id=WP_005050251.1;transl_table=11 NC_008258.1 RefSeq gene 1656872 1658191 . + . ID=gene1809;Name=SFV_RS09090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09090;old_locus_tag=SFV_1624 NC_008258.1 Protein Homology CDS 1656872 1658191 . + 0 ID=cds1777;Parent=gene1809;Dbxref=Genbank:WP_000898119.1;Name=WP_000898119.1;gbkey=CDS;product=sodium:dicarboxylate symporter;protein_id=WP_000898119.1;transl_table=11 NC_008258.1 RefSeq gene 1658370 1659671 . + . ID=gene1810;Name=SFV_RS09095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09095;old_locus_tag=SFV_1625 NC_008258.1 Protein Homology CDS 1658370 1659671 . + 0 ID=cds1778;Parent=gene1810;Dbxref=Genbank:WP_000732470.1;Name=WP_000732470.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000732470.1;transl_table=11 NC_008258.1 RefSeq gene 1659747 1660676 . + . ID=gene1811;Name=SFV_RS09100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09100;old_locus_tag=SFV_1626 NC_008258.1 Protein Homology CDS 1659747 1660676 . + 0 ID=cds1779;Parent=gene1811;Dbxref=Genbank:WP_000135186.1;Name=WP_000135186.1;Note=binds to DNA replication terminator sequences to prevent passage of replication forks;gbkey=CDS;product=DNA replication terminus site-binding protein;protein_id=WP_000135186.1;transl_table=11 NC_008258.1 RefSeq gene 1660673 1662076 . - . ID=gene1812;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=SFV_RS09105;old_locus_tag=SFV_1627 NC_008258.1 Protein Homology CDS 1660673 1662076 . - 0 ID=cds1780;Parent=gene1812;Dbxref=Genbank:WP_001099068.1;Name=WP_001099068.1;Note=class II family (does not require metal)%3B tetrameric enzyme%3B fumarase C%3B reversibly converts (S)-malate to fumarate and water%3B functions in the TCA cycle;gbkey=CDS;gene=fumC;product=fumarate hydratase class II;protein_id=WP_001099068.1;transl_table=11 NC_008258.1 RefSeq gene 1662219 1663865 . - . ID=gene1813;Name=SFV_RS09110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09110;old_locus_tag=SFV_1628 NC_008258.1 Protein Homology CDS 1662219 1663865 . - 0 ID=cds1781;Parent=gene1813;Dbxref=Genbank:WP_000066660.1;Name=WP_000066660.1;Note=catalyzes the formation of malate from fumerate;gbkey=CDS;product=fumarate hydratase class I%2C aerobic;protein_id=WP_000066660.1;transl_table=11 NC_008258.1 RefSeq gene 1664064 1665239 . + . ID=gene1814;Name=SFV_RS09115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09115;old_locus_tag=SFV_1629 NC_008258.1 Protein Homology CDS 1664064 1665239 . + 0 ID=cds1782;Parent=gene1814;Dbxref=Genbank:WP_001170669.1;Name=WP_001170669.1;Note=catalyzes the formation of of fructose 6-phosphate from mannose 6-phosphate;gbkey=CDS;product=mannose-6-phosphate isomerase;protein_id=WP_001170669.1;transl_table=11 NC_008258.1 RefSeq gene 1665340 1666848 . + . ID=gene1815;Name=SFV_RS09120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09120;old_locus_tag=SFV_1630 NC_008258.1 Protein Homology CDS 1665340 1666848 . + 0 ID=cds1783;Parent=gene1815;Dbxref=Genbank:WP_001043366.1;Name=WP_001043366.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001043366.1;transl_table=11 NC_008258.1 RefSeq gene 1667168 1668340 . - . ID=gene1816;Name=SFV_RS09125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09125;old_locus_tag=SFV_1631 NC_008258.1 Protein Homology CDS 1667168 1668340 . - 0 ID=cds1784;Parent=gene1816;Dbxref=Genbank:WP_011587227.1;Name=WP_011587227.1;gbkey=CDS;product=membrane protein;protein_id=WP_011587227.1;transl_table=11 NC_008258.1 RefSeq gene 1668379 1669752 . - . ID=gene1817;Name=SFV_RS09130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09130;pseudo=true NC_008258.1 Protein Homology CDS 1668379 1669752 . - 0 ID=cds1785;Parent=gene1817;gbkey=CDS;product=glucuronide transporter;pseudo=true;transl_except=(pos:complement(1668562..1668564)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1669749 1671560 . - . ID=gene1818;Name=SFV_RS09135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09135;old_locus_tag=SFV_1633 NC_008258.1 Protein Homology CDS 1669749 1671560 . - 0 ID=cds1786;Parent=gene1818;Dbxref=Genbank:WP_000945905.1;Name=WP_000945905.1;gbkey=CDS;product=beta-D-glucuronidase;protein_id=WP_000945905.1;transl_table=11 NC_008258.1 RefSeq gene 1671948 1672538 . - . ID=gene1819;Name=SFV_RS09140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09140;old_locus_tag=SFV_1634 NC_008258.1 Protein Homology CDS 1671948 1672538 . - 0 ID=cds1787;Parent=gene1819;Dbxref=Genbank:WP_000969092.1;Name=WP_000969092.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000969092.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1672924 1673701 . + . ID=id270;gbkey=repeat_region NC_008258.1 RefSeq region 1672928 1673695 . - . ID=id271;gbkey=mobile_element NC_008258.1 RefSeq gene 1672943 1673446 . - . ID=gene1820;Name=SFV_RS09145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09145;old_locus_tag=SFV_1635 NC_008258.1 Protein Homology CDS 1672943 1673446 . - 0 ID=cds1788;Parent=gene1820;Dbxref=Genbank:WP_005105427.1;Name=WP_005105427.1;gbkey=CDS;product=transposase;protein_id=WP_005105427.1;transl_table=11 NC_008258.1 RefSeq gene 1673697 1674311 . - . ID=gene1821;Name=SFV_RS09150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09150;partial=true;pseudo=true;start_range=.,1673697 NC_008258.1 Protein Homology CDS 1673697 1674311 . - 0 ID=cds1789;Parent=gene1821;Note=Acts on the hydroxyl group at position 7 of the steroid frame;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=7-alpha-hydroxysteroid dehydrogenase;pseudo=true;start_range=.,1673697;transl_table=11 NC_008258.1 RefSeq gene 1674423 1675451 . - . ID=gene1822;Name=SFV_RS09155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09155;old_locus_tag=SFV_1637 NC_008258.1 Protein Homology CDS 1674423 1675451 . - 0 ID=cds1790;Parent=gene1822;Dbxref=Genbank:WP_000179490.1;Name=WP_000179490.1;Note=regulates malXY which are involved in maltose-glucose transport;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_000179490.1;transl_table=11 NC_008258.1 RefSeq gene 1675626 1677218 . + . ID=gene1823;Name=SFV_RS09160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09160;old_locus_tag=SFV_1638 NC_008258.1 Protein Homology CDS 1675626 1677218 . + 0 ID=cds1791;Parent=gene1823;Dbxref=Genbank:WP_000125618.1;Name=WP_000125618.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%3B catalyzes the phosphorylation of maltose and glucose concomitant with their translocation across the cell membrane%3B component IIB catalyzes the phosphorylation of the sugar molecule%3B IIC forms the translocation channel and contains the substrate specific binding site;gbkey=CDS;product=PTS maltose transporter subunit IICB;protein_id=WP_000125618.1;transl_table=11 NC_008258.1 RefSeq gene 1677228 1678400 . + . ID=gene1824;Name=SFV_RS09165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09165;old_locus_tag=SFV_1639 NC_008258.1 Protein Homology CDS 1677228 1678400 . + 0 ID=cds1792;Parent=gene1824;Dbxref=Genbank:WP_000459409.1;Name=WP_000459409.1;Note=catalyzes the formation of homocysteine and pyruvate from cystathionine%3B also acts a a negative regulator for the mal regulon but interacting with the transcriptional activator MalT;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_000459409.1;transl_table=11 NC_008258.1 RefSeq gene 1678504 1679505 . + . ID=gene1825;Name=SFV_RS09170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09170;old_locus_tag=SFV_1640 NC_008258.1 Protein Homology CDS 1678504 1679505 . + 0 ID=cds1793;Parent=gene1825;Dbxref=Genbank:WP_000567518.1;Name=WP_000567518.1;gbkey=CDS;product=adenosine deaminase;protein_id=WP_000567518.1;transl_table=11 NC_008258.1 RefSeq gene 1679541 1680515 . - . ID=gene1826;Name=SFV_RS09175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09175;old_locus_tag=SFV_1641 NC_008258.1 Protein Homology CDS 1679541 1680515 . - 0 ID=cds1794;Parent=gene1826;Dbxref=Genbank:WP_001282522.1;Name=WP_001282522.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_001282522.1;transl_table=11 NC_008258.1 RefSeq gene 1680758 1680883 . + . ID=gene1827;Name=SFV_RS09180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09180 NC_008258.1 Protein Homology CDS 1680758 1680883 . + 0 ID=cds1795;Parent=gene1827;Dbxref=Genbank:WP_001300888.1;Name=WP_001300888.1;gbkey=CDS;product=divisome-associated membrane protein Blr;protein_id=WP_001300888.1;transl_table=11 NC_008258.1 RefSeq gene 1681156 1681371 . + . ID=gene1828;Name=SFV_RS09185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09185;old_locus_tag=SFV_1642 NC_008258.1 Protein Homology CDS 1681156 1681371 . + 0 ID=cds1796;Parent=gene1828;Dbxref=Genbank:WP_000217950.1;Name=WP_000217950.1;Note=YdgT%3B in E. coli%2C when complexed with H-NS or StpA binds a 26 base-pair DNA sequence of oriC%3B seems to play a role in optimizing the activity of oriC%3B non-essential%3B Hha protein paralog%3B in an hha mutant background%2C cnu is overexpressed and can compensate hha-induced phenotypes;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_000217950.1;transl_table=11 NC_008258.1 RefSeq gene 1681457 1681897 . + . ID=gene1829;Name=SFV_RS09190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09190;old_locus_tag=SFV_1643 NC_008258.1 Protein Homology CDS 1681457 1681897 . + 0 ID=cds1797;Parent=gene1829;Dbxref=Genbank:WP_005050275.1;Name=WP_005050275.1;gbkey=CDS;product=membrane protein;protein_id=WP_005050275.1;transl_table=11 NC_008258.1 RefSeq gene 1681974 1682555 . + . ID=gene1830;Name=SFV_RS09195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09195;old_locus_tag=SFV_1644 NC_008258.1 Protein Homology CDS 1681974 1682555 . + 0 ID=cds1798;Parent=gene1830;Dbxref=Genbank:WP_000133204.1;Name=WP_000133204.1;gbkey=CDS;product=electron transport complex subunit RsxA;protein_id=WP_000133204.1;transl_table=11 NC_008258.1 RefSeq gene 1682555 1683133 . + . ID=gene1831;Name=SFV_RS09200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09200;old_locus_tag=SFV_1645 NC_008258.1 Protein Homology CDS 1682555 1683133 . + 0 ID=cds1799;Parent=gene1831;Dbxref=Genbank:WP_000991816.1;Name=WP_000991816.1;Note=part of membrane-bound complex thought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transporter RnfD;protein_id=WP_000991816.1;transl_table=11 NC_008258.1 RefSeq gene 1683126 1685348 . + . ID=gene1832;Name=SFV_RS09205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09205;old_locus_tag=SFV_1646 NC_008258.1 Protein Homology CDS 1683126 1685348 . + 0 ID=cds1800;Parent=gene1832;Dbxref=Genbank:WP_000915842.1;Name=WP_000915842.1;Note=part of membrane-bound complex thought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transporter RsxC;protein_id=WP_000915842.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1684795 1685278 . + . ID=id272;gbkey=repeat_region NC_008258.1 RefSeq gene 1685349 1686407 . + . ID=gene1833;Name=rnfD;gbkey=Gene;gene=rnfD;gene_biotype=protein_coding;locus_tag=SFV_RS09210;old_locus_tag=SFV_1647 NC_008258.1 Protein Homology CDS 1685349 1686407 . + 0 ID=cds1801;Parent=gene1833;Dbxref=Genbank:WP_000231929.1;Name=WP_000231929.1;Note=RnfD%3B RsxD%3B required for nitrogen fixation in Rhodobacter capsulatus%3B part of a membrane-bound complex thought to be involved in electron transport to nitrogenase%3B in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents;gbkey=CDS;gene=rnfD;product=electron transport complex subunit RsxD;protein_id=WP_000231929.1;transl_table=11 NC_008258.1 RefSeq gene 1686411 1687031 . + . ID=gene1834;Name=SFV_RS09215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09215;old_locus_tag=SFV_1648 NC_008258.1 Protein Homology CDS 1686411 1687031 . + 0 ID=cds1802;Parent=gene1834;Dbxref=Genbank:WP_000920811.1;Name=WP_000920811.1;Note=part of membrane-bound complex hought to be involved in electron transport to nitrogen;gbkey=CDS;product=electron transport complex protein RnfG;protein_id=WP_000920811.1;transl_table=11 NC_008258.1 RefSeq gene 1687035 1687730 . + . ID=gene1835;Name=SFV_RS09220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09220;old_locus_tag=SFV_1649 NC_008258.1 Protein Homology CDS 1687035 1687730 . + 0 ID=cds1803;Parent=gene1835;Dbxref=Genbank:WP_001289662.1;Name=WP_001289662.1;gbkey=CDS;product=electron transporter RsxE;protein_id=WP_001289662.1;transl_table=11 NC_008258.1 RefSeq gene 1687730 1688365 . + . ID=gene1836;Name=SFV_RS09225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09225;old_locus_tag=SFV_1650 NC_008258.1 Protein Homology CDS 1687730 1688365 . + 0 ID=cds1804;Parent=gene1836;Dbxref=Genbank:WP_001030328.1;Name=WP_001030328.1;Note=DNA-(apurinic or apyrimidinic site) lyase%3B has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity%3B removed damaged DNA at cytosines%2C thymines and guanines;gbkey=CDS;product=endonuclease III;protein_id=WP_001030328.1;transl_table=11 NC_008258.1 RefSeq gene 1688493 1688693 . + . ID=gene1837;Name=SFV_RS09230;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09230;pseudo=true NC_008258.1 Protein Homology CDS 1688493 1688693 . + 0 ID=cds1805;Parent=gene1837;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:1688595..1688597%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1688976 1690478 . + . ID=gene1838;Name=tppB;gbkey=Gene;gene=tppB;gene_biotype=protein_coding;gene_synonym=ydgR;locus_tag=SFV_RS09235;old_locus_tag=SFV_1651 NC_008258.1 Protein Homology CDS 1688976 1690478 . + 0 ID=cds1806;Parent=gene1838;Dbxref=Genbank:WP_000100945.1;Name=WP_000100945.1;Note=mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation;gbkey=CDS;gene=tppB;product=peptide ABC transporter permease;protein_id=WP_000100945.1;transl_table=11 NC_008258.1 RefSeq gene 1690583 1691188 . + . ID=gene1839;Name=SFV_RS09240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09240;old_locus_tag=SFV_1652 NC_008258.1 Protein Homology CDS 1690583 1691188 . + 0 ID=cds1807;Parent=gene1839;Dbxref=Genbank:WP_000765761.1;Name=WP_000765761.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000765761.1;transl_table=11 NC_008258.1 RefSeq gene 1691232 1692092 . - . ID=gene1840;Name=SFV_RS09245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09245;old_locus_tag=SFV_1653 NC_008258.1 Protein Homology CDS 1691232 1692092 . - 0 ID=cds1808;Parent=gene1840;Dbxref=Genbank:WP_005050284.1;Name=WP_005050284.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal;gbkey=CDS;product=pyridoxamine kinase;protein_id=WP_005050284.1;transl_table=11 NC_008258.1 RefSeq gene 1692154 1693428 . - . ID=gene1841;Name=SFV_RS09250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09250;old_locus_tag=SFV_1654 NC_008258.1 Protein Homology CDS 1692154 1693428 . - 0 ID=cds1809;Parent=gene1841;Dbxref=Genbank:WP_011069386.1;Name=WP_011069386.1;gbkey=CDS;product=tyrosine--tRNA ligase;protein_id=WP_011069386.1;transl_table=11 NC_008258.1 RefSeq gene 1693557 1694213 . - . ID=gene1842;Name=SFV_RS09255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09255;old_locus_tag=SFV_1655 NC_008258.1 Protein Homology CDS 1693557 1694213 . - 0 ID=cds1810;Parent=gene1842;Dbxref=Genbank:WP_001282319.1;Name=WP_001282319.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate;gbkey=CDS;product=pyridoxine/pyridoxamine 5'-phosphate oxidase;protein_id=WP_001282319.1;transl_table=11 NC_008258.1 RefSeq gene 1694272 1694535 . - . ID=gene1843;Name=SFV_RS09260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09260;old_locus_tag=SFV_1656 NC_008258.1 Protein Homology CDS 1694272 1694535 . - 0 ID=cds1811;Parent=gene1843;Dbxref=Genbank:WP_045177714.1;Name=WP_045177714.1;Note=MliC%3B membrane-bound lysozyme inhibitor of c-type lysozyme;gbkey=CDS;product=lysozyme inhibitor;protein_id=WP_045177714.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1694528 1695863 . + . ID=id273;gbkey=repeat_region NC_008258.1 RefSeq region 1694531 1695861 . - . ID=id274;gbkey=mobile_element NC_008258.1 RefSeq gene 1694542 1695447 . - . ID=gene1844;Name=SFV_RS09265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09265;old_locus_tag=SFV_1657 NC_008258.1 Protein Homology CDS 1694542 1695447 . - 0 ID=cds1812;Parent=gene1844;Dbxref=Genbank:WP_011069387.1;Name=WP_011069387.1;gbkey=CDS;product=integrase;protein_id=WP_011069387.1;transl_table=11 NC_008258.1 RefSeq gene 1695405 1695770 . - . ID=gene1845;Name=SFV_RS09270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09270;old_locus_tag=SFV_1658 NC_008258.1 Protein Homology CDS 1695405 1695770 . - 0 ID=cds1813;Parent=gene1845;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1696035 1697144 . - . ID=gene1846;Name=anmK;gbkey=Gene;gene=anmK;gene_biotype=protein_coding;gene_synonym=ydhH;locus_tag=SFV_RS09275;old_locus_tag=SFV_1659 NC_008258.1 Protein Homology CDS 1696035 1697144 . - 0 ID=cds1814;Parent=gene1846;Dbxref=Genbank:WP_000835080.1;Name=WP_000835080.1;Note=catalyzes hydrolysis of 1%2C6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate%3B involved in murein recycling;gbkey=CDS;gene=anmK;product=anhydro-N-acetylmuramic acid kinase;protein_id=WP_000835080.1;transl_table=11 NC_008258.1 RefSeq gene 1697418 1697885 . + . ID=gene1847;Name=SFV_RS09280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09280;old_locus_tag=SFV_1660 NC_008258.1 Protein Homology CDS 1697418 1697885 . + 0 ID=cds1815;Parent=gene1847;Dbxref=Genbank:WP_000597196.1;Name=WP_000597196.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000597196.1;transl_table=11 NC_008258.1 RefSeq gene 1697932 1698366 . - . ID=gene1848;Name=SFV_RS09285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09285;old_locus_tag=SFV_1661 NC_008258.1 Protein Homology CDS 1697932 1698366 . - 0 ID=cds1816;Parent=gene1848;Dbxref=Genbank:WP_001296943.1;Name=WP_001296943.1;Note=Transcription regulator that can both activate or repress expression;gbkey=CDS;product=SlyA family transcriptional regulator;protein_id=WP_001296943.1;transl_table=11 NC_008258.1 RefSeq gene 1698567 1698803 . + . ID=gene1849;Name=SFV_RS09290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09290;old_locus_tag=SFV_1662 NC_008258.1 Protein Homology CDS 1698567 1698803 . + 0 ID=cds1817;Parent=gene1849;Dbxref=Genbank:WP_000670998.1;Name=WP_000670998.1;gbkey=CDS;product=membrane protein;protein_id=WP_000670998.1;transl_table=11 NC_008258.1 RefSeq gene 1698806 1699663 . + . ID=gene1850;Name=SFV_RS09295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09295;old_locus_tag=SFV_1663 NC_008258.1 Protein Homology CDS 1698806 1699663 . + 0 ID=cds1818;Parent=gene1850;Dbxref=Genbank:WP_005109447.1;Name=WP_005109447.1;gbkey=CDS;product=membrane protein;protein_id=WP_005109447.1;transl_table=11 NC_008258.1 RefSeq gene 1699663 1701675 . + . ID=gene1851;Name=SFV_RS09300;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09300;pseudo=true NC_008258.1 Protein Homology CDS 1699663 1701675 . + 0 ID=cds1819;Parent=gene1851;gbkey=CDS;product=fusaric acid resistance protein;pseudo=true;transl_except=(pos:1699987..1699989%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1701676 1702197 . - . ID=gene1852;Name=SFV_RS09305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09305;old_locus_tag=SFV_1666 NC_008258.1 Protein Homology CDS 1701676 1702197 . - 0 ID=cds1820;Parent=gene1852;Dbxref=Genbank:WP_005050299.1;Name=WP_005050299.1;Note=SodC%3B copper and zinc binding%3B converts superoxide radicals to hydrogen peroxide and water;gbkey=CDS;product=superoxide dismutase [Cu-Zn];protein_id=WP_005050299.1;transl_table=11 NC_008258.1 RefSeq gene 1702278 1703174 . - . ID=gene1853;Name=SFV_RS09310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09310;old_locus_tag=SFV_1667 NC_008258.1 Protein Homology CDS 1702278 1703174 . - 0 ID=cds1821;Parent=gene1853;Dbxref=Genbank:WP_000250631.1;Name=WP_000250631.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000250631.1;transl_table=11 NC_008258.1 RefSeq gene 1703223 1703462 . - . ID=gene1854;Name=SFV_RS09315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09315 NC_008258.1 Protein Homology CDS 1703223 1703462 . - 0 ID=cds1822;Parent=gene1854;Dbxref=Genbank:WP_000840481.1;Name=WP_000840481.1;gbkey=CDS;product=DUF1289 domain-containing protein;protein_id=WP_000840481.1;transl_table=11 NC_008258.1 RefSeq gene 1703565 1704164 . + . ID=gene1855;Name=SFV_RS09320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09320;old_locus_tag=SFV_1668 NC_008258.1 Protein Homology CDS 1703565 1704164 . + 0 ID=cds1823;Parent=gene1855;Dbxref=Genbank:WP_001032930.1;Name=WP_001032930.1;Note=represses nemA which is involved in degradation of N-ethylmaleimide;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001032930.1;transl_table=11 NC_008258.1 RefSeq gene 1704201 1705298 . + . ID=gene1856;Name=SFV_RS09325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09325;old_locus_tag=SFV_1670 NC_008258.1 Protein Homology CDS 1704201 1705298 . + 0 ID=cds1824;Parent=gene1856;Dbxref=Genbank:WP_000093572.1;Name=WP_000093572.1;Note=FMN-linked%3B catalyzes the formation of N-ethylsuccinimide from N-ethylmaleimide;gbkey=CDS;product=N-ethylmaleimide reductase;protein_id=WP_000093572.1;transl_table=11 NC_008258.1 RefSeq gene 1705379 1705786 . + . ID=gene1857;Name=SFV_RS09330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09330;old_locus_tag=SFV_1671 NC_008258.1 Protein Homology CDS 1705379 1705786 . + 0 ID=cds1825;Parent=gene1857;Dbxref=Genbank:WP_001237796.1;Name=WP_001237796.1;Note=Ni-dependent%3B catalyzes the formation of S-lactoylglutathione from methylglyoxal and glutathione;gbkey=CDS;product=lactoylglutathione lyase;protein_id=WP_001237796.1;transl_table=11 NC_008258.1 RefSeq gene 1705889 1706536 . + . ID=gene1858;Name=SFV_RS09335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09335;old_locus_tag=SFV_1672 NC_008258.1 Protein Homology CDS 1705889 1706536 . + 0 ID=cds1826;Parent=gene1858;Dbxref=Genbank:WP_001282277.1;Name=WP_001282277.1;Note=Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A);gbkey=CDS;product=ribonuclease T;protein_id=WP_001282277.1;transl_table=11 NC_008258.1 RefSeq gene 1706629 1711087 . + . ID=gene1859;Name=SFV_RS09340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09340;pseudo=true NC_008258.1 Protein Homology CDS 1706629 1711087 . + 0 ID=cds1827;Parent=gene1859;Note=similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases%3B longest known protein in E. coli;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ATP-dependent helicase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1711087 1712844 . + . ID=id275;gbkey=repeat_region NC_008258.1 RefSeq gene 1711131 1712279 . - . ID=gene1860;Name=SFV_RS09345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09345;old_locus_tag=SFV_1675 NC_008258.1 Protein Homology CDS 1711131 1712279 . - 0 ID=cds1828;Parent=gene1860;Dbxref=Genbank:WP_011587230.1;Name=WP_011587230.1;gbkey=CDS;product=transposase;protein_id=WP_011587230.1;transl_table=11 NC_008258.1 RefSeq gene 1712317 1712463 . - . ID=gene1861;Name=SFV_RS09350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09350 NC_008258.1 Protein Homology CDS 1712317 1712463 . - 0 ID=cds1829;Parent=gene1861;Dbxref=Genbank:WP_044024330.1;Name=WP_044024330.1;gbkey=CDS;product=transposase;protein_id=WP_044024330.1;transl_table=11 NC_008258.1 RefSeq gene 1712410 1712634 . + . ID=gene1862;Name=SFV_RS09355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09355 NC_008258.1 Protein Homology CDS 1712410 1712634 . + 0 ID=cds1830;Parent=gene1862;Dbxref=Genbank:WP_024260275.1;Name=WP_024260275.1;gbkey=CDS;product=transposase;protein_id=WP_024260275.1;transl_table=11 NC_008258.1 RefSeq gene 1712890 1713237 . - . ID=gene1863;Name=SFV_RS09360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09360;old_locus_tag=SFV_1676 NC_008258.1 Protein Homology CDS 1712890 1713237 . - 0 ID=cds1831;Parent=gene1863;Dbxref=Genbank:WP_000108172.1;Name=WP_000108172.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_000108172.1;transl_table=11 NC_008258.1 RefSeq gene 1713572 1714399 . + . ID=gene1864;Name=SFV_RS09365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09365;old_locus_tag=SFV_1677 NC_008258.1 Protein Homology CDS 1713572 1714399 . + 0 ID=cds1832;Parent=gene1864;Dbxref=Genbank:WP_000101167.1;Name=WP_000101167.1;gbkey=CDS;product=endopeptidase;protein_id=WP_000101167.1;transl_table=11 NC_008258.1 RefSeq gene 1714527 1715108 . + . ID=gene1865;Name=SFV_RS09370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09370;old_locus_tag=SFV_1678 NC_008258.1 Protein Homology CDS 1714527 1715108 . + 0 ID=cds1833;Parent=gene1865;Dbxref=Genbank:WP_000007283.1;Name=WP_000007283.1;Note=SodB%3B iron binding%3B present under aerobic and anaerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Fe];protein_id=WP_000007283.1;transl_table=11 NC_008258.1 RefSeq gene 1715254 1716423 . - . ID=gene1866;Name=SFV_RS09375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09375;old_locus_tag=SFV_1679 NC_008258.1 Protein Homology CDS 1715254 1716423 . - 0 ID=cds1834;Parent=gene1866;Dbxref=Genbank:WP_000701054.1;Name=WP_000701054.1;gbkey=CDS;product=transporter;protein_id=WP_000701054.1;transl_table=11 NC_008258.1 RefSeq gene 1716589 1716678 . - . ID=gene1867;Name=SFV_RS09380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09380 NC_008258.1 Protein Homology CDS 1716589 1716678 . - 0 ID=cds1835;Parent=gene1867;Dbxref=Genbank:WP_000102278.1;Name=WP_000102278.1;gbkey=CDS;product=stress response membrane;protein_id=WP_000102278.1;transl_table=11 NC_008258.1 RefSeq gene 1716977 1718002 . + . ID=gene1868;Name=SFV_RS09385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09385;old_locus_tag=SFV_1680 NC_008258.1 Protein Homology CDS 1716977 1718002 . + 0 ID=cds1836;Parent=gene1868;Dbxref=Genbank:WP_000190982.1;Name=WP_000190982.1;Note=binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers;gbkey=CDS;product=PurR family transcriptional regulator;protein_id=WP_000190982.1;transl_table=11 NC_008258.1 RefSeq gene 1717999 1718931 . - . ID=gene1869;Name=SFV_RS09390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09390;old_locus_tag=SFV_1681 NC_008258.1 Protein Homology CDS 1717999 1718931 . - 0 ID=cds1837;Parent=gene1869;Dbxref=Genbank:WP_000269493.1;Name=WP_000269493.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000269493.1;transl_table=11 NC_008258.1 RefSeq gene 1719044 1720255 . + . ID=gene1870;Name=SFV_RS09395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09395;old_locus_tag=SFV_1682 NC_008258.1 Protein Homology CDS 1719044 1720255 . + 0 ID=cds1838;Parent=gene1870;Dbxref=Genbank:WP_001182376.1;Name=WP_001182376.1;Note=uncharacterized member of the major facilitator superfamily (MFS);gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_001182376.1;transl_table=11 NC_008258.1 RefSeq gene 1720546 1721694 . + . ID=gene1871;Name=SFV_RS09400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09400;old_locus_tag=SFV_1683 NC_008258.1 Protein Homology CDS 1720546 1721694 . + 0 ID=cds1839;Parent=gene1871;Dbxref=Genbank:WP_000098906.1;Name=WP_000098906.1;Note=catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge;gbkey=CDS;product=cyclopropane fatty acyl phospholipid synthase;protein_id=WP_000098906.1;transl_table=11 NC_008258.1 RefSeq gene 1721734 1722375 . - . ID=gene1872;Name=SFV_RS09405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09405;old_locus_tag=SFV_1684 NC_008258.1 Protein Homology CDS 1721734 1722375 . - 0 ID=cds1840;Parent=gene1872;Dbxref=Genbank:WP_000493947.1;Name=WP_000493947.1;Note=catalyzes the formation of riboflavin from 6%2C7-dimethyl-8-(1-D-ribityl)lumazine;gbkey=CDS;product=riboflavin synthase;protein_id=WP_000493947.1;transl_table=11 NC_008258.1 RefSeq gene 1722590 1723963 . + . ID=gene1873;Name=SFV_RS09410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09410;old_locus_tag=SFV_1685 NC_008258.1 Protein Homology CDS 1722590 1723963 . + 0 ID=cds1841;Parent=gene1873;Dbxref=Genbank:WP_001174966.1;Name=WP_001174966.1;Note=NorM%3B MdtK%3B functions as a Na(+)/drug antiporter%3B inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones;gbkey=CDS;product=multidrug resistance protein MdtK;protein_id=WP_001174966.1;transl_table=11 NC_008258.1 RefSeq gene 1724004 1725260 . - . ID=gene1874;Name=SFV_RS09415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09415;old_locus_tag=SFV_1686 NC_008258.1 Protein Homology CDS 1724004 1725260 . - 0 ID=cds1842;Parent=gene1874;Dbxref=Genbank:WP_000534313.1;Name=WP_000534313.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000534313.1;transl_table=11 NC_008258.1 RefSeq gene 1725568 1725644 . + . ID=gene1875;Name=SFV_RS09420;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS09420;old_locus_tag=SFV_1687 NC_008258.1 tRNAscan-SE tRNA 1725568 1725644 . + . ID=rna32;Parent=gene1875;anticodon=(pos:1725602..1725604);gbkey=tRNA;product=tRNA-Val NC_008258.1 tRNAscan-SE exon 1725568 1725644 . + . ID=id276;Parent=rna32;anticodon=(pos:1725602..1725604);gbkey=tRNA;product=tRNA-Val NC_008258.1 RefSeq gene 1725649 1725725 . + . ID=gene1876;Name=SFV_RS09425;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS09425;old_locus_tag=SFV_1688 NC_008258.1 tRNAscan-SE tRNA 1725649 1725725 . + . ID=rna33;Parent=gene1876;anticodon=(pos:1725683..1725685);gbkey=tRNA;product=tRNA-Val NC_008258.1 tRNAscan-SE exon 1725649 1725725 . + . ID=id277;Parent=rna33;anticodon=(pos:1725683..1725685);gbkey=tRNA;product=tRNA-Val NC_008258.1 RefSeq gene 1725833 1726138 . + . ID=gene1877;Name=SFV_RS09430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09430;old_locus_tag=SFV_1689 NC_008258.1 Protein Homology CDS 1725833 1726138 . + 0 ID=cds1843;Parent=gene1877;Dbxref=Genbank:WP_000212657.1;Name=WP_000212657.1;gbkey=CDS;product=monooxygenase;protein_id=WP_000212657.1;transl_table=11 NC_008258.1 RefSeq gene 1726264 1727868 . + . ID=gene1878;Name=SFV_RS09435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09435;old_locus_tag=SFV_1690 NC_008258.1 Protein Homology CDS 1726264 1727868 . + 0 ID=cds1844;Parent=gene1878;Dbxref=Genbank:WP_000716957.1;Name=WP_000716957.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000716957.1;transl_table=11 NC_008258.1 RefSeq gene 1727880 1728677 . - . ID=gene1879;Name=SFV_RS09440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09440;old_locus_tag=SFV_1691 NC_008258.1 Protein Homology CDS 1727880 1728677 . - 0 ID=cds1845;Parent=gene1879;Dbxref=Genbank:WP_000587596.1;Name=WP_000587596.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000587596.1;transl_table=11 NC_008258.1 RefSeq gene 1728681 1729466 . - . ID=gene1880;Name=SFV_RS09445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09445;old_locus_tag=SFV_1692 NC_008258.1 Protein Homology CDS 1728681 1729466 . - 0 ID=cds1846;Parent=gene1880;Dbxref=Genbank:WP_001070005.1;Name=WP_001070005.1;gbkey=CDS;product=thiosulfate reductase cytochrome B;protein_id=WP_001070005.1;transl_table=11 NC_008258.1 RefSeq gene 1729463 1730131 . - . ID=gene1881;Name=SFV_RS09450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09450;old_locus_tag=SFV_1693 NC_008258.1 Protein Homology CDS 1729463 1730131 . - 0 ID=cds1847;Parent=gene1881;Dbxref=Genbank:WP_001349911.1;Name=WP_001349911.1;gbkey=CDS;product=ferredoxin;protein_id=WP_001349911.1;transl_table=11 NC_008258.1 RefSeq gene 1730195 1730833 . - . ID=gene1882;Name=SFV_RS09455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09455;old_locus_tag=SFV_1694 NC_008258.1 Protein Homology CDS 1730195 1730833 . - 0 ID=cds1848;Parent=gene1882;Dbxref=Genbank:WP_001344535.1;Name=WP_001344535.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001344535.1;transl_table=11 NC_008258.1 RefSeq gene 1730846 1732666 . - . ID=gene1883;Name=SFV_RS09460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09460;old_locus_tag=SFV_1695 NC_008258.1 Protein Homology CDS 1730846 1732666 . - 0 ID=cds1849;Parent=gene1883;Dbxref=Genbank:WP_044023934.1;Name=WP_044023934.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_044023934.1;transl_table=11 NC_008258.1 RefSeq gene 1732639 1732947 . - . ID=gene1884;Name=SFV_RS09465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09465 NC_008258.1 Protein Homology CDS 1732639 1732947 . - 0 ID=cds1850;Parent=gene1884;Dbxref=Genbank:WP_044023936.1;Name=WP_044023936.1;gbkey=CDS;product=aldehyde:ferredoxin oxidoreductase;protein_id=WP_044023936.1;transl_table=11 NC_008258.1 RefSeq gene 1732968 1733594 . - . ID=gene1885;Name=SFV_RS09470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09470;old_locus_tag=SFV_1696 NC_008258.1 Protein Homology CDS 1732968 1733594 . - 0 ID=cds1851;Parent=gene1885;Dbxref=Genbank:WP_001070230.1;Name=WP_001070230.1;gbkey=CDS;product=4Fe-4S ferredoxin;protein_id=WP_001070230.1;transl_table=11 NC_008258.1 RefSeq gene 1734051 1734260 . - . ID=gene1886;Name=SFV_RS09475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09475;old_locus_tag=SFV_1697 NC_008258.1 Protein Homology CDS 1734051 1734260 . - 0 ID=cds1852;Parent=gene1886;Dbxref=Genbank:WP_000528342.1;Name=WP_000528342.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000528342.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1734287 1735062 . + . ID=id278;gbkey=repeat_region NC_008258.1 RefSeq region 1734292 1735059 . + . ID=id279;gbkey=mobile_element NC_008258.1 RefSeq gene 1734541 1735044 . + . ID=gene1887;Name=SFV_RS09480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09480;old_locus_tag=SFV_1698 NC_008258.1 Protein Homology CDS 1734541 1735044 . + 0 ID=cds1853;Parent=gene1887;Dbxref=Genbank:WP_005048937.1;Name=WP_005048937.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005048937.1;transl_table=11 NC_008258.1 RefSeq gene 1735593 1737005 . + . ID=gene1888;Name=SFV_RS09485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09485;old_locus_tag=SFV_1699 NC_008258.1 Protein Homology CDS 1735593 1737005 . + 0 ID=cds1854;Parent=gene1888;Dbxref=Genbank:WP_005050332.1;Name=WP_005050332.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase;protein_id=WP_005050332.1;transl_table=11 NC_008258.1 RefSeq gene 1737317 1737553 . + . ID=gene1889;Name=SFV_RS09490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09490;old_locus_tag=SFV_1700 NC_008258.1 Protein Homology CDS 1737317 1737553 . + 0 ID=cds1855;Parent=gene1889;Dbxref=Genbank:WP_000648420.1;Name=WP_000648420.1;Note=major outer membrane lipoprotein%3B interacts with peptidoglycan to maintain the integrity of the cell envelope;gbkey=CDS;product=murein lipoprotein;protein_id=WP_000648420.1;transl_table=11 NC_008258.1 RefSeq gene 1737616 1738620 . - . ID=gene1890;Name=SFV_RS09495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09495;old_locus_tag=SFV_1701 NC_008258.1 Protein Homology CDS 1737616 1738620 . - 0 ID=cds1856;Parent=gene1890;Dbxref=Genbank:WP_000817104.1;Name=WP_000817104.1;Note=catalyzes the formation of a meso-diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link in peptidoglycan synthesis;gbkey=CDS;product=murein transpeptidase;protein_id=WP_000817104.1;transl_table=11 NC_008258.1 RefSeq gene 1738769 1739185 . - . ID=gene1891;Name=SFV_RS09500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09500;old_locus_tag=SFV_1702 NC_008258.1 Protein Homology CDS 1738769 1739185 . - 0 ID=cds1857;Parent=gene1891;Dbxref=Genbank:WP_001196515.1;Name=WP_001196515.1;Note=Acts with SufS to catalyze the formation of L-alanine from L-cysteine;gbkey=CDS;product=cysteine desulfuration protein SufE;protein_id=WP_001196515.1;transl_table=11 NC_008258.1 RefSeq gene 1739198 1740418 . - . ID=gene1892;Name=SFV_RS09505;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09505;old_locus_tag=SFV_1703;pseudo=true NC_008258.1 Protein Homology CDS 1739198 1740418 . - 0 ID=cds1858;Parent=gene1892;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cysteine sulfinate desulfinase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1740415 1741581 . - . ID=gene1893;Name=SFV_RS09510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09510;old_locus_tag=SFV_1704 NC_008258.1 Protein Homology CDS 1740415 1741581 . - 0 ID=cds1859;Parent=gene1893;Dbxref=Genbank:WP_005105484.1;Name=WP_005105484.1;Note=with SufBC activates cysteine desulfurase SufS;gbkey=CDS;product=Fe-S cluster assembly protein SufD;protein_id=WP_005105484.1;transl_table=11 NC_008258.1 RefSeq gene 1741660 1742406 . - . ID=gene1894;Name=sufC;gbkey=Gene;gene=sufC;gene_biotype=protein_coding;locus_tag=SFV_RS09515;old_locus_tag=SFV_1705 NC_008258.1 Protein Homology CDS 1741660 1742406 . - 0 ID=cds1860;Parent=gene1894;Dbxref=Genbank:WP_000948872.1;Name=WP_000948872.1;Note=part of SUF system involved in inserting iron-sulfur clusters into proteins%3B in Escherichia coli this protein forms a complex with SufBD%3B the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE;gbkey=CDS;gene=sufC;product=Fe-S cluster assembly ATPase SufC;protein_id=WP_000948872.1;transl_table=11 NC_008258.1 RefSeq gene 1742416 1743903 . - . ID=gene1895;Name=SFV_RS09520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09520;old_locus_tag=SFV_1706 NC_008258.1 Protein Homology CDS 1742416 1743903 . - 0 ID=cds1861;Parent=gene1895;Dbxref=Genbank:WP_000089364.1;Name=WP_000089364.1;Note=with SufCD activates cysteine desulfurase SufS;gbkey=CDS;product=FeS cluster assembly protein SufB;protein_id=WP_000089364.1;transl_table=11 NC_008258.1 RefSeq gene 1743912 1744280 . - . ID=gene1896;Name=sufA;gbkey=Gene;gene=sufA;gene_biotype=protein_coding;locus_tag=SFV_RS09525;old_locus_tag=SFV_1707 NC_008258.1 Protein Homology CDS 1743912 1744280 . - 0 ID=cds1862;Parent=gene1896;Dbxref=Genbank:WP_000367164.1;Name=WP_000367164.1;Note=functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]%3B [4Fe-4S]) are assembled%3B forms a homodimer%3B similar to IscA protein;gbkey=CDS;gene=sufA;product=(Fe-S)-cluster assembly protein;protein_id=WP_000367164.1;transl_table=11 NC_008258.1 RefSeq gene 1744828 1745016 . - . ID=gene1897;Name=SFV_RS09530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09530 NC_008258.1 Protein Homology CDS 1744828 1745016 . - 0 ID=cds1863;Parent=gene1897;Dbxref=Genbank:WP_001296104.1;Name=WP_001296104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296104.1;transl_table=11 NC_008258.1 RefSeq gene 1745116 1745526 . - . ID=gene1898;Name=SFV_RS09535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09535;old_locus_tag=SFV_1709 NC_008258.1 Protein Homology CDS 1745116 1745526 . - 0 ID=cds1864;Parent=gene1898;Dbxref=Genbank:WP_000637981.1;Name=WP_000637981.1;Note=required for efficient enterobactin production;gbkey=CDS;product=acyl-CoA esterase;protein_id=WP_000637981.1;transl_table=11 NC_008258.1 RefSeq gene 1745523 1748579 . - . ID=gene1899;Name=SFV_RS09540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09540;old_locus_tag=SFV_1710 NC_008258.1 Protein Homology CDS 1745523 1748579 . - 0 ID=cds1865;Parent=gene1899;Dbxref=Genbank:WP_000612889.1;Name=WP_000612889.1;gbkey=CDS;product=membrane protein;protein_id=WP_000612889.1;transl_table=11 NC_008258.1 RefSeq gene 1748968 1750080 . + . ID=gene1900;Name=SFV_RS09545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09545;old_locus_tag=SFV_1711 NC_008258.1 Protein Homology CDS 1748968 1750080 . + 0 ID=cds1866;Parent=gene1900;Dbxref=Genbank:WP_000248636.1;Name=WP_000248636.1;Note=YdiK%3B inner membrane protein%3B ydiK promoter presents a PurR sequence%2C suggesting that its expression is purine-regulated%3B unknown function;gbkey=CDS;product=hypothetical protein;protein_id=WP_000248636.1;transl_table=11 NC_008258.1 RefSeq gene 1750508 1750864 . + . ID=gene1901;Name=SFV_RS09550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09550;old_locus_tag=SFV_1712 NC_008258.1 Protein Homology CDS 1750508 1750864 . + 0 ID=cds1867;Parent=gene1901;Dbxref=Genbank:WP_024260276.1;Name=WP_024260276.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260276.1;transl_table=11 NC_008258.1 RefSeq gene 1750964 1751803 . + . ID=gene1902;Name=SFV_RS09555;end_range=1751803,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09555;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1750964 1751803 . + 0 ID=cds1868;Parent=gene1902;end_range=1751803,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1751783 1752556 . + . ID=id280;gbkey=repeat_region NC_008258.1 RefSeq region 1751785 1752552 . + . ID=id281;gbkey=mobile_element NC_008258.1 RefSeq gene 1752014 1752537 . + . ID=gene1903;Name=SFV_RS09560;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09560;old_locus_tag=SFV_1714;pseudo=true NC_008258.1 Protein Homology CDS 1752014 1752537 . + 0 ID=cds1869;Parent=gene1903;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1752530 1752955 . + . ID=gene1904;Name=SFV_RS09565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09565 NC_008258.1 Protein Homology CDS 1752530 1752955 . + 0 ID=cds1870;Parent=gene1904;Dbxref=Genbank:WP_049760328.1;Name=WP_049760328.1;gbkey=CDS;product=transporter;protein_id=WP_049760328.1;transl_table=11 NC_008258.1 RefSeq gene 1753138 1754409 . + . ID=gene1905;Name=SFV_RS09570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09570;old_locus_tag=SFV_1715 NC_008258.1 Protein Homology CDS 1753138 1754409 . + 0 ID=cds1871;Parent=gene1905;Dbxref=Genbank:WP_044023940.1;Name=WP_044023940.1;gbkey=CDS;product=transporter;protein_id=WP_044023940.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1754532 1755307 . + . ID=id282;gbkey=repeat_region NC_008258.1 RefSeq region 1754535 1755302 . + . ID=id283;gbkey=mobile_element NC_008258.1 RefSeq gene 1754784 1755287 . + . ID=gene1906;Name=SFV_RS09575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09575;old_locus_tag=SFV_1717 NC_008258.1 Protein Homology CDS 1754784 1755287 . + 0 ID=cds1872;Parent=gene1906;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 1755314 1756063 . + . ID=gene1907;Name=SFV_RS09580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09580;old_locus_tag=SFV_1718 NC_008258.1 Protein Homology CDS 1755314 1756063 . + 0 ID=cds1873;Parent=gene1907;Dbxref=Genbank:WP_000863681.1;Name=WP_000863681.1;Note=YdiB%3B quinate/shikimate dehydrogenase from Escherichia coli uses both NAD and NAD(P) to convert quinate and shikimate to 3-dehydroquinate and 3-dehydroshikimate;gbkey=CDS;product=quinate/shikimate dehydrogenase;protein_id=WP_000863681.1;transl_table=11 NC_008258.1 RefSeq gene 1756094 1756852 . + . ID=gene1908;Name=SFV_RS09585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09585;old_locus_tag=SFV_1719 NC_008258.1 Protein Homology CDS 1756094 1756852 . + 0 ID=cds1874;Parent=gene1908;Dbxref=Genbank:WP_000860164.1;Name=WP_000860164.1;gbkey=CDS;product=3-dehydroquinate dehydratase;protein_id=WP_000860164.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1756915 1757689 . + . ID=id284;gbkey=repeat_region NC_008258.1 RefSeq region 1756919 1757686 . - . ID=id285;gbkey=mobile_element NC_008258.1 RefSeq gene 1756934 1757437 . - . ID=gene1909;Name=SFV_RS09590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09590;old_locus_tag=SFV_1720 NC_008258.1 Protein Homology CDS 1756934 1757437 . - 0 ID=cds1875;Parent=gene1909;Dbxref=Genbank:WP_005048937.1;Name=WP_005048937.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005048937.1;transl_table=11 NC_008258.1 RefSeq gene 1757664 1759232 . + . ID=gene1910;Name=SFV_RS09595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09595;old_locus_tag=SFV_1722 NC_008258.1 Protein Homology CDS 1757664 1759232 . + 0 ID=cds1876;Parent=gene1910;Dbxref=Genbank:WP_049760329.1;Name=WP_049760329.1;gbkey=CDS;product=sulfatase;protein_id=WP_049760329.1;transl_table=11 NC_008258.1 RefSeq gene 1759284 1760441 . + . ID=gene1911;Name=SFV_RS09600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09600;old_locus_tag=SFV_1723 NC_008258.1 Protein Homology CDS 1759284 1760441 . + 0 ID=cds1877;Parent=gene1911;Dbxref=Genbank:WP_005109547.1;Name=WP_005109547.1;gbkey=CDS;product=anaerobic sulfatase maturase;protein_id=WP_005109547.1;transl_table=11 NC_008258.1 RefSeq gene 1760732 1762147 . + . ID=gene1912;Name=SFV_RS09605;end_range=1762147,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09605;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1760732 1762147 . + 0 ID=cds1878;Parent=gene1912;end_range=1762147,.;gbkey=CDS;partial=true;product=multidrug ABC transporter ATP-binding protein;pseudo=true;transl_except=(pos:1761791..1761793%2Caa:Other),(pos:1761995..1761997%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 1761989 1762764 . + . ID=id286;gbkey=repeat_region NC_008258.1 RefSeq region 1761993 1762760 . + . ID=id287;gbkey=mobile_element NC_008258.1 RefSeq gene 1762222 1762745 . + . ID=gene1913;Name=SFV_RS09615;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09615;old_locus_tag=SFV_1726;pseudo=true NC_008258.1 Protein Homology CDS 1762222 1762745 . + 0 ID=cds1879;Parent=gene1913;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1762805 1763194 . + . ID=gene1914;Name=SFV_RS09620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09620 NC_008258.1 Protein Homology CDS 1762805 1763194 . + 0 ID=cds1880;Parent=gene1914;Dbxref=Genbank:WP_000084208.1;Name=WP_000084208.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000084208.1;transl_table=11 NC_008258.1 RefSeq gene 1763232 1765592 . + . ID=gene1915;Name=SFV_RS09625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09625;old_locus_tag=SFV_1727 NC_008258.1 Protein Homology CDS 1763232 1765592 . + 0 ID=cds1881;Parent=gene1915;Dbxref=Genbank:WP_000832506.1;Name=WP_000832506.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000832506.1;transl_table=11 NC_008258.1 RefSeq gene 1765649 1766644 . + . ID=gene1916;Name=SFV_RS09630;end_range=1766644,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09630;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1765649 1766644 . + 0 ID=cds1882;Parent=gene1916;end_range=1766644,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=zinc protease;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1766643 1767417 . + . ID=id288;gbkey=repeat_region NC_008258.1 RefSeq region 1766646 1767413 . + . ID=id289;gbkey=mobile_element NC_008258.1 RefSeq gene 1766752 1766976 . + . ID=gene1917;Name=SFV_RS09635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09635 NC_008258.1 Protein Homology CDS 1766752 1766976 . + 0 ID=cds1883;Parent=gene1917;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1767003 1767398 . + . ID=gene1918;Name=SFV_RS09640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09640 NC_008258.1 Protein Homology CDS 1767003 1767398 . + 0 ID=cds1884;Parent=gene1918;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 1767317 1769209 . + . ID=gene1919;Name=SFV_RS09645;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09645;partial=true;pseudo=true;start_range=.,1767317 NC_008258.1 Protein Homology CDS 1767317 1769209 . + 0 ID=cds1885;Parent=gene1919;gbkey=CDS;partial=true;product=zinc protease;pseudo=true;start_range=.,1767317;transl_except=(pos:1767353..1767355%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1769419 1769559 . + . ID=gene1920;Name=SFV_RS09650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09650 NC_008258.1 Protein Homology CDS 1769419 1769559 . + 0 ID=cds1886;Parent=gene1920;Dbxref=Genbank:WP_032155900.1;Name=WP_032155900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155900.1;transl_table=11 NC_008258.1 RefSeq gene 1769570 1770970 . + . ID=gene1921;Name=SFV_RS09655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09655;old_locus_tag=SFV_1730 NC_008258.1 Protein Homology CDS 1769570 1770970 . + 0 ID=cds1887;Parent=gene1921;Dbxref=Genbank:WP_000358803.1;Name=WP_000358803.1;gbkey=CDS;product=glutamate decarboxylase beta;protein_id=WP_000358803.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1769603 1770974 . + . ID=id290;gbkey=repeat_region NC_008258.1 RefSeq gene 1771126 1772661 . + . ID=gene1922;Name=SFV_RS09660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09660;old_locus_tag=SFV_1731 NC_008258.1 Protein Homology CDS 1771126 1772661 . + 0 ID=cds1888;Parent=gene1922;Dbxref=Genbank:WP_000246019.1;Name=WP_000246019.1;gbkey=CDS;product=glutamate/gamma-aminobutyrate antiporter;protein_id=WP_000246019.1;transl_table=11 NC_008258.1 RefSeq gene 1772957 1774111 . + . ID=gene1923;Name=SFV_RS09665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09665;old_locus_tag=SFV_1732 NC_008258.1 Protein Homology CDS 1772957 1774111 . + 0 ID=cds1889;Parent=gene1923;Dbxref=Genbank:WP_001324546.1;Name=WP_001324546.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001324546.1;transl_table=11 NC_008258.1 RefSeq gene 1774488 1775633 . + . ID=gene1924;Name=SFV_RS09670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09670;old_locus_tag=SFV_1733 NC_008258.1 Protein Homology CDS 1774488 1775633 . + 0 ID=cds1890;Parent=gene1924;Dbxref=Genbank:WP_005105493.1;Name=WP_005105493.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_005105493.1;transl_table=11 NC_008258.1 RefSeq gene 1775675 1776175 . + . ID=gene1925;Name=SFV_RS09675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09675;old_locus_tag=SFV_1734 NC_008258.1 Protein Homology CDS 1775675 1776175 . + 0 ID=cds1891;Parent=gene1925;Dbxref=Genbank:WP_001053659.1;Name=WP_001053659.1;gbkey=CDS;product=diguanylate phosphodiesterase;protein_id=WP_001053659.1;transl_table=11 NC_008258.1 RefSeq gene 1776433 1776765 . + . ID=gene1926;Name=SFV_RS09680;end_range=1776765,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09680;old_locus_tag=SFV_1735;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1776433 1776765 . + 0 ID=cds1892;Parent=gene1926;Note=catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent%3B involved in peptidoglycan synthesis;end_range=1776765,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=D-alanyl-D-alanine dipeptidase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1776779 1777675 . + . ID=gene1927;Name=SFV_RS09685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09685;old_locus_tag=SFV_1736 NC_008258.1 Protein Homology CDS 1776779 1777675 . + 0 ID=cds1893;Parent=gene1927;Dbxref=Genbank:WP_000979625.1;Name=WP_000979625.1;gbkey=CDS;product=cytochrome C550;protein_id=WP_000979625.1;transl_table=11 NC_008258.1 RefSeq gene 1777672 1778658 . + . ID=gene1928;Name=SFV_RS09690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09690;old_locus_tag=SFV_1737 NC_008258.1 Protein Homology CDS 1777672 1778658 . + 0 ID=cds1894;Parent=gene1928;Dbxref=Genbank:WP_000193543.1;Name=WP_000193543.1;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_000193543.1;transl_table=11 NC_008258.1 RefSeq gene 1778651 1779421 . + . ID=gene1929;Name=SFV_RS09695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09695;old_locus_tag=SFV_1738 NC_008258.1 Protein Homology CDS 1778651 1779421 . + 0 ID=cds1895;Parent=gene1929;Dbxref=Genbank:WP_001285517.1;Name=WP_001285517.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_001285517.1;transl_table=11 NC_008258.1 RefSeq gene 1779633 1780064 . - . ID=gene1930;Name=SFV_RS09700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09700;old_locus_tag=SFV_1739 NC_008258.1 Protein Homology CDS 1779633 1780064 . - 0 ID=cds1896;Parent=gene1930;Dbxref=Genbank:WP_000152305.1;Name=WP_000152305.1;gbkey=CDS;product=peroxiredoxin OsmC;protein_id=WP_000152305.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1780219 1780993 . + . ID=id291;gbkey=repeat_region NC_008258.1 RefSeq region 1780222 1780989 . - . ID=id292;gbkey=mobile_element NC_008258.1 RefSeq gene 1780237 1780740 . - . ID=gene1931;Name=SFV_RS09705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09705;old_locus_tag=SFV_1740 NC_008258.1 Protein Homology CDS 1780237 1780740 . - 0 ID=cds1897;Parent=gene1931;Dbxref=Genbank:WP_005048937.1;Name=WP_005048937.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005048937.1;transl_table=11 NC_008258.1 RefSeq gene 1781122 1782819 . + . ID=gene1932;Name=SFV_RS09710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09710;old_locus_tag=SFV_1742 NC_008258.1 Protein Homology CDS 1781122 1782819 . + 0 ID=cds1898;Parent=gene1932;Dbxref=Genbank:WP_000433464.1;Name=WP_000433464.1;gbkey=CDS;product=NAD-dependent malic enzyme;protein_id=WP_000433464.1;transl_table=11 NC_008258.1 RefSeq gene 1782953 1783979 . + . ID=gene1933;Name=adhP;gbkey=Gene;gene=adhP;gene_biotype=pseudogene;gene_synonym=adhA;locus_tag=SFV_RS09715;pseudo=true NC_008258.1 Protein Homology CDS 1782953 1783979 . + 0 ID=cds1899;Parent=gene1933;Note=similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=adhP;product=ethanol-active dehydrogenase/acetaldehyde-active reductase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1784125 1784409 . + . ID=gene1934;Name=SFV_RS09720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09720 NC_008258.1 Protein Homology CDS 1784125 1784409 . + 0 ID=cds1900;Parent=gene1934;Dbxref=Genbank:WP_005050353.1;Name=WP_005050353.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_005050353.1;transl_table=11 NC_008258.1 RefSeq gene 1784637 1785290 . - . ID=gene1935;Name=SFV_RS09725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09725;old_locus_tag=SFV_1745 NC_008258.1 Protein Homology CDS 1784637 1785290 . - 0 ID=cds1901;Parent=gene1935;Dbxref=Genbank:WP_000045648.1;Name=WP_000045648.1;Note=cytochrome b556(FDO) component%3B heme containing;gbkey=CDS;product=formate dehydrogenase nitrate-inducible cytochrome b556(Fdn) subunit;protein_id=WP_000045648.1;transl_table=11 NC_008258.1 RefSeq gene 1785283 1786167 . - . ID=gene1936;Name=SFV_RS09730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09730;old_locus_tag=SFV_1746 NC_008258.1 Protein Homology CDS 1785283 1786167 . - 0 ID=cds1902;Parent=gene1936;Dbxref=Genbank:WP_001240582.1;Name=WP_001240582.1;Note=beta subunit%3B involved in the use of formate as an electron donor during aerobic respiration%3B acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit);gbkey=CDS;product=formate dehydrogenase nitrate-inducible iron-sulfur subunit;protein_id=WP_001240582.1;transl_table=11 NC_008258.1 RefSeq gene 1786180 1788591 . - . ID=gene1937;Name=SFV_RS09735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09735 NC_008258.1 Protein Homology CDS 1786180 1788591 . - 0 ID=cds1903;Parent=gene1937;Dbxref=Genbank:WP_000181650.1;Name=WP_000181650.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_000181650.1;transl_table=11 NC_008258.1 RefSeq gene 1788640 1789227 . - . ID=gene1938;Name=SFV_RS09740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09740 NC_008258.1 Protein Homology CDS 1788640 1789227 . - 0 ID=cds1904;Parent=gene1938;Dbxref=Genbank:WP_000383358.1;Name=WP_000383358.1;gbkey=CDS;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_000383358.1;transl_table=11 NC_008258.1 RefSeq gene 1789516 1790340 . + . ID=gene1939;Name=SFV_RS09745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09745;old_locus_tag=SFV_1748 NC_008258.1 Protein Homology CDS 1789516 1790340 . + 0 ID=cds1905;Parent=gene1939;Dbxref=Genbank:WP_005105497.1;Name=WP_005105497.1;gbkey=CDS;product=aromatic amino acid exporter;protein_id=WP_005105497.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1790525 1791297 . + . ID=id293;gbkey=repeat_region NC_008258.1 RefSeq region 1790528 1791295 . - . ID=id294;gbkey=mobile_element NC_008258.1 RefSeq gene 1790543 1791046 . - . ID=gene1940;Name=SFV_RS09750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09750;old_locus_tag=SFV_1749 NC_008258.1 Protein Homology CDS 1790543 1791046 . - 0 ID=cds1906;Parent=gene1940;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 1791372 1792472 . + . ID=gene1941;Name=SFV_RS09755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09755;old_locus_tag=SFV_1751 NC_008258.1 Protein Homology CDS 1791372 1792472 . + 0 ID=cds1907;Parent=gene1941;Dbxref=Genbank:WP_000768403.1;Name=WP_000768403.1;gbkey=CDS;product=porin;protein_id=WP_000768403.1;transl_table=11 NC_008258.1 RefSeq gene 1792642 1793121 . + . ID=gene1942;Name=SFV_RS09760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09760;old_locus_tag=SFV_1752 NC_008258.1 Protein Homology CDS 1792642 1793121 . + 0 ID=cds1908;Parent=gene1942;Dbxref=Genbank:WP_011587233.1;Name=WP_011587233.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011587233.1;transl_table=11 NC_008258.1 RefSeq gene 1793231 1794220 . + . ID=gene1943;Name=SFV_RS09765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09765;old_locus_tag=SFV_1753 NC_008258.1 Protein Homology CDS 1793231 1794220 . + 0 ID=cds1909;Parent=gene1943;Dbxref=Genbank:WP_000627104.1;Name=WP_000627104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000627104.1;transl_table=11 NC_008258.1 RefSeq gene 1794227 1794454 . + . ID=gene1944;Name=SFV_RS09770;end_range=1794454,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09770;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1794227 1794454 . + 0 ID=cds1910;Parent=gene1944;end_range=1794454,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1794451 1795223 . + . ID=id295;gbkey=repeat_region NC_008258.1 RefSeq region 1794453 1795220 . + . ID=id296;gbkey=mobile_element NC_008258.1 RefSeq gene 1794702 1795205 . + . ID=gene1945;Name=SFV_RS09775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09775;old_locus_tag=SFV_1755 NC_008258.1 Protein Homology CDS 1794702 1795205 . + 0 ID=cds1911;Parent=gene1945;Dbxref=Genbank:WP_005105498.1;Name=WP_005105498.1;gbkey=CDS;product=transposase;protein_id=WP_005105498.1;transl_table=11 NC_008258.1 RefSeq gene 1795663 1797051 . + . ID=gene1946;Name=SFV_RS09780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09780;old_locus_tag=SFV_1756 NC_008258.1 Protein Homology CDS 1795663 1797051 . + 0 ID=cds1912;Parent=gene1946;Dbxref=Genbank:WP_001207892.1;Name=WP_001207892.1;Note=involved in the transport of nitrate and nitrite;gbkey=CDS;product=nitrite extrusion protein 2;protein_id=WP_001207892.1;transl_table=11 NC_008258.1 RefSeq gene 1797133 1800873 . + . ID=gene1947;Name=narZ;gbkey=Gene;gene=narZ;gene_biotype=protein_coding;locus_tag=SFV_RS09785;old_locus_tag=SFV_1757 NC_008258.1 Protein Homology CDS 1797133 1800873 . + 0 ID=cds1913;Parent=gene1947;Dbxref=Genbank:WP_000040454.1;Name=WP_000040454.1;Note=with NarYV catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli%3B expression of nitrate reductase Z is not dependent on nitrate levels;gbkey=CDS;gene=narZ;product=nitrate reductase A subunit alpha;protein_id=WP_000040454.1;transl_table=11 NC_008258.1 RefSeq gene 1800870 1801748 . + . ID=gene1948;Name=narH;end_range=1801748,.;gbkey=Gene;gene=narH;gene_biotype=pseudogene;locus_tag=SFV_RS09790;old_locus_tag=SFV_1758;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1800870 1801748 . + 0 ID=cds1914;Parent=gene1948;Note=with NarGJI catalyzes the reduction of nitrate%3B the beta subunit is an iron sulfur cluster containing electron transfer subunit%3B one of 3 nitrate reductases in E. coli and in E. coli is expressed when nitrate levels are high;end_range=1801748,.;exception=unextendable partial coding region;gbkey=CDS;gene=narH;partial=true;product=nitrate reductase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1801746 1803578 . + . ID=id297;gbkey=repeat_region;gene=narH NC_008258.1 RefSeq region 1801749 1803577 . + . ID=id298;gbkey=mobile_element NC_008258.1 RefSeq gene 1801837 1802202 . + . ID=gene1949;Name=SFV_RS09795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09795;old_locus_tag=SFV_1759 NC_008258.1 Protein Homology CDS 1801837 1802202 . + 0 ID=cds1915;Parent=gene1949;Dbxref=Genbank:WP_000124119.1;Name=WP_000124119.1;gbkey=CDS;product=transposase;protein_id=WP_000124119.1;transl_table=11 NC_008258.1 RefSeq gene 1802202 1803389 . + . ID=gene1950;Name=SFV_RS09800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09800;old_locus_tag=SFV_1760 NC_008258.1 Protein Homology CDS 1802202 1803389 . + 0 ID=cds1916;Parent=gene1950;Dbxref=Genbank:WP_000937551.1;Name=WP_000937551.1;gbkey=CDS;product=transposase;protein_id=WP_000937551.1;transl_table=11 NC_008258.1 RefSeq gene 1803660 1804325 . - . ID=gene1951;Name=SFV_RS09805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09805;old_locus_tag=SFV_1761 NC_008258.1 Protein Homology CDS 1803660 1804325 . - 0 ID=cds1917;Parent=gene1951;Dbxref=Genbank:WP_005050384.1;Name=WP_005050384.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005050384.1;transl_table=11 NC_008258.1 RefSeq gene 1804487 1805590 . - . ID=gene1952;Name=SFV_RS09810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09810;old_locus_tag=SFV_1762 NC_008258.1 Protein Homology CDS 1804487 1805590 . - 0 ID=cds1918;Parent=gene1952;Dbxref=Genbank:WP_000531448.1;Name=WP_000531448.1;gbkey=CDS;product=NADP-dependent oxidoreductase;protein_id=WP_000531448.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1805707 1807043 . + . ID=id299;gbkey=repeat_region NC_008258.1 RefSeq region 1805709 1807039 . - . ID=id300;gbkey=mobile_element NC_008258.1 RefSeq gene 1805720 1806625 . - . ID=gene1953;Name=SFV_RS09815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09815;old_locus_tag=SFV_1763 NC_008258.1 Protein Homology CDS 1805720 1806625 . - 0 ID=cds1919;Parent=gene1953;Dbxref=Genbank:WP_005048971.1;Name=WP_005048971.1;gbkey=CDS;product=integrase;protein_id=WP_005048971.1;transl_table=11 NC_008258.1 RefSeq gene 1806583 1806948 . - . ID=gene1954;Name=SFV_RS09820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09820;old_locus_tag=SFV_1764 NC_008258.1 Protein Homology CDS 1806583 1806948 . - 0 ID=cds1920;Parent=gene1954;Dbxref=Genbank:WP_000567796.1;Name=WP_000567796.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567796.1;transl_table=11 NC_008258.1 RefSeq gene 1807107 1807624 . + . ID=gene1955;Name=SFV_RS09825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09825;pseudo=true NC_008258.1 Protein Homology CDS 1807107 1807624 . + 0 ID=cds1921;Parent=gene1955;exception=annotated by transcript or proteomic data;gbkey=CDS;product=acetyltransferase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1807621 1808070 . + . ID=gene1956;Name=SFV_RS09830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09830 NC_008258.1 Protein Homology CDS 1807621 1808070 . + 0 ID=cds1922;Parent=gene1956;Dbxref=Genbank:WP_001076516.1;Name=WP_001076516.1;gbkey=CDS;product=membrane protein;protein_id=WP_001076516.1;transl_table=11 NC_008258.1 RefSeq gene 1808071 1808304 . - . ID=gene1957;Name=SFV_RS09835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09835;old_locus_tag=SFV_1767 NC_008258.1 Protein Homology CDS 1808071 1808304 . - 0 ID=cds1923;Parent=gene1957;Dbxref=Genbank:WP_000018633.1;Name=WP_000018633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000018633.1;transl_table=11 NC_008258.1 RefSeq gene 1808390 1808563 . - . ID=gene1958;Name=SFV_RS09840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09840 NC_008258.1 Protein Homology CDS 1808390 1808563 . - 0 ID=cds1924;Parent=gene1958;Dbxref=Genbank:WP_044024340.1;Name=WP_044024340.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024340.1;transl_table=11 NC_008258.1 RefSeq gene 1808722 1808913 . - . ID=gene1959;Name=SFV_RS09845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09845 NC_008258.1 Protein Homology CDS 1808722 1808913 . - 0 ID=cds1925;Parent=gene1959;Dbxref=Genbank:WP_012817775.1;Name=WP_012817775.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012817775.1;transl_table=11 NC_008258.1 RefSeq gene 1809255 1810064 . - . ID=gene1960;Name=SFV_RS09850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09850;old_locus_tag=SFV_1769 NC_008258.1 Protein Homology CDS 1809255 1810064 . - 0 ID=cds1926;Parent=gene1960;Dbxref=Genbank:WP_000867989.1;Name=WP_000867989.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_000867989.1;transl_table=11 NC_008258.1 RefSeq gene 1810274 1811698 . - . ID=gene1961;Name=SFV_RS09855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09855;old_locus_tag=SFV_1770 NC_008258.1 Protein Homology CDS 1810274 1811698 . - 0 ID=cds1927;Parent=gene1961;Dbxref=Genbank:WP_001163912.1;Name=WP_001163912.1;Note=catalyzes the formation of 4-aminobutanoate from 4-aminobutanal%3B involved in putrescine degradation;gbkey=CDS;product=gamma-aminobutyraldehyde dehydrogenase;protein_id=WP_001163912.1;transl_table=11 NC_008258.1 RefSeq gene 1811720 1812514 . - . ID=gene1962;Name=SFV_RS09860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09860;old_locus_tag=SFV_1771 NC_008258.1 Protein Homology CDS 1811720 1812514 . - 0 ID=cds1928;Parent=gene1962;Dbxref=Genbank:WP_000555458.1;Name=WP_000555458.1;gbkey=CDS;product=ABC transporter permease;protein_id=WP_000555458.1;transl_table=11 NC_008258.1 RefSeq gene 1812504 1812851 . - . ID=gene1963;Name=SFV_RS09865;end_range=1812851,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09865;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1812504 1812851 . - 0 ID=cds1929;Parent=gene1963;end_range=1812851,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=spermidine/putrescine ABC transporter permease;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1812850 1816122 . + . ID=id301;gbkey=repeat_region NC_008258.1 RefSeq region 1812852 1812977 . + . ID=id302;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq region 1812985 1813296 . + . ID=id303;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1813194 1813295 . + . ID=gene1964;Name=SFV_RS09875;end_range=1813295,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09875;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1813194 1813295 . + 0 ID=cds1930;Parent=gene1964;end_range=1813295,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq region 1813295 1814728 . + . ID=id304;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1813353 1814540 . + . ID=gene1965;Name=SFV_RS09880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09880;old_locus_tag=SFV_1773 NC_008258.1 Protein Homology CDS 1813353 1814540 . + 0 ID=cds1931;Parent=gene1965;Dbxref=Genbank:WP_000937573.1;Name=WP_000937573.1;gbkey=CDS;product=transposase;protein_id=WP_000937573.1;transl_table=11 NC_008258.1 RefSeq gene 1814683 1815561 . - . ID=gene1966;Name=SFV_RS09885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09885;old_locus_tag=SFV_1774;partial=true;pseudo=true;start_range=.,1814683 NC_008258.1 Protein Homology CDS 1814683 1815561 . - 0 ID=cds1932;Parent=gene1966;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,1814683;transl_table=11 NC_008258.1 RefSeq gene 1815629 1815856 . + . ID=gene1967;Name=SFV_RS24490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24490 NC_008258.1 Protein Homology CDS 1815629 1815856 . + 0 ID=cds1933;Parent=gene1967;Dbxref=Genbank:WP_000604950.1;Name=WP_000604950.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000604950.1;transl_table=11 NC_008258.1 RefSeq gene 1815914 1816120 . - . ID=gene1968;Name=SFV_RS24495;end_range=1816120,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24495;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1815914 1816120 . - 0 ID=cds1934;Parent=gene1968;end_range=1816120,.;gbkey=CDS;partial=true;product=TetR family transcriptional regulator;pseudo=true;transl_except=(pos:complement(1816076..1816078)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1816153 1816821 . - . ID=gene1969;Name=SFV_RS09895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09895;old_locus_tag=SFV_1775 NC_008258.1 Protein Homology CDS 1816153 1816821 . - 0 ID=cds1935;Parent=gene1969;Dbxref=Genbank:WP_001261020.1;Name=WP_001261020.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001261020.1;transl_table=11 NC_008258.1 RefSeq gene 1817124 1817717 . - . ID=gene1970;Name=SFV_RS09900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09900;old_locus_tag=SFV_1776 NC_008258.1 Protein Homology CDS 1817124 1817717 . - 0 ID=cds1936;Parent=gene1970;Dbxref=Genbank:WP_001025907.1;Name=WP_001025907.1;Note=with TehA confers resistance to tellurite;gbkey=CDS;product=tellurite resistance methyltransferase TehB;protein_id=WP_001025907.1;transl_table=11 NC_008258.1 RefSeq gene 1817714 1818706 . - . ID=gene1971;Name=SFV_RS09905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09905;old_locus_tag=SFV_1777 NC_008258.1 Protein Homology CDS 1817714 1818706 . - 0 ID=cds1937;Parent=gene1971;Dbxref=Genbank:WP_005047890.1;Name=WP_005047890.1;gbkey=CDS;product=tellurite resistance protein TehA;protein_id=WP_005047890.1;transl_table=11 NC_008258.1 RefSeq gene 1818830 1819810 . + . ID=gene1972;Name=SFV_RS09910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09910;old_locus_tag=SFV_1778 NC_008258.1 Protein Homology CDS 1818830 1819810 . + 0 ID=cds1938;Parent=gene1972;Dbxref=Genbank:WP_001234070.1;Name=WP_001234070.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_001234070.1;transl_table=11 NC_008258.1 RefSeq gene 1819805 1820341 . - . ID=gene1973;Name=SFV_RS09915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09915;old_locus_tag=SFV_1779 NC_008258.1 Protein Homology CDS 1819805 1820341 . - 0 ID=cds1939;Parent=gene1973;Dbxref=Genbank:WP_000140884.1;Name=WP_000140884.1;gbkey=CDS;product=ribosomal-protein-L7/L12-serine acetyltransferase;protein_id=WP_000140884.1;transl_table=11 NC_008258.1 RefSeq gene 1820404 1820628 . - . ID=gene1974;Name=SFV_RS09920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09920;old_locus_tag=SFV_1780 NC_008258.1 Protein Homology CDS 1820404 1820628 . - 0 ID=cds1940;Parent=gene1974;Dbxref=Genbank:WP_001296778.1;Name=WP_001296778.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296778.1;transl_table=11 NC_008258.1 RefSeq gene 1820644 1820847 . + . ID=gene1975;Name=SFV_RS09925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09925 NC_008258.1 Protein Homology CDS 1820644 1820847 . + 0 ID=cds1941;Parent=gene1975;Dbxref=Genbank:WP_011069399.1;Name=WP_011069399.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069399.1;transl_table=11 NC_008258.1 RefSeq gene 1820768 1822423 . - . ID=gene1976;Name=mdoD;gbkey=Gene;gene=mdoD;gene_biotype=protein_coding;gene_synonym=opgD;locus_tag=SFV_RS09930;old_locus_tag=SFV_1781 NC_008258.1 Protein Homology CDS 1820768 1822423 . - 0 ID=cds1942;Parent=gene1976;Dbxref=Genbank:WP_000375970.1;Name=WP_000375970.1;Note=involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans;gbkey=CDS;gene=mdoD;product=glucan biosynthesis protein D;protein_id=WP_000375970.1;transl_table=11 NC_008258.1 RefSeq gene 1822648 1823991 . - . ID=gene1977;Name=SFV_RS09935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09935;old_locus_tag=SFV_1782 NC_008258.1 Protein Homology CDS 1822648 1823991 . - 0 ID=cds1943;Parent=gene1977;Dbxref=Genbank:WP_000013771.1;Name=WP_000013771.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000013771.1;transl_table=11 NC_008258.1 RefSeq gene 1824208 1825131 . + . ID=gene1978;Name=SFV_RS09940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09940;old_locus_tag=SFV_1783 NC_008258.1 Protein Homology CDS 1824208 1825131 . + 0 ID=cds1944;Parent=gene1978;Dbxref=Genbank:WP_000414573.1;Name=WP_000414573.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000414573.1;transl_table=11 NC_008258.1 RefSeq gene 1825169 1826809 . - . ID=gene1979;Name=SFV_RS09945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09945;old_locus_tag=SFV_1784 NC_008258.1 Protein Homology CDS 1825169 1826809 . - 0 ID=cds1945;Parent=gene1979;Dbxref=Genbank:WP_001098540.1;Name=WP_001098540.1;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_001098540.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1827137 1828886 . + . ID=id305;gbkey=repeat_region NC_008258.1 RefSeq region 1827138 1827620 . + . ID=id306;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1827185 1827667 . + . ID=gene1980;Name=SFV_RS09950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09950;old_locus_tag=SFV_1785 NC_008258.1 Protein Homology CDS 1827185 1827667 . + 0 ID=cds1946;Parent=gene1980;Dbxref=Genbank:WP_000042697.1;Name=WP_000042697.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000042697.1;transl_table=11 NC_008258.1 RefSeq region 1827621 1828884 . - . ID=id307;gbkey=mobile_element NC_008258.1 RefSeq gene 1827664 1828377 . - . ID=gene1981;Name=SFV_RS09955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09955;old_locus_tag=SFV_1786 NC_008258.1 Protein Homology CDS 1827664 1828377 . - 0 ID=cds1947;Parent=gene1981;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 1828518 1828820 . - . ID=gene1982;Name=SFV_RS09960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09960;old_locus_tag=SFV_1787 NC_008258.1 Protein Homology CDS 1828518 1828820 . - 0 ID=cds1948;Parent=gene1982;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1828955 1829122 . + . ID=id308;gbkey=repeat_region NC_008258.1 RefSeq region 1828955 1829120 . + . ID=id309;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1829195 1829344 . + . ID=gene1983;Name=SFV_RS09965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09965 NC_008258.1 Protein Homology CDS 1829195 1829344 . + 0 ID=cds1949;Parent=gene1983;Dbxref=Genbank:WP_023517637.1;Name=WP_023517637.1;gbkey=CDS;product=protein HokB;protein_id=WP_023517637.1;transl_table=11 NC_008258.1 RefSeq gene 1829416 1829589 . - . ID=gene1984;Name=SFV_RS09970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09970;old_locus_tag=SFV_1788 NC_008258.1 Protein Homology CDS 1829416 1829589 . - 0 ID=cds1950;Parent=gene1984;Dbxref=Genbank:WP_000731833.1;Name=WP_000731833.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_000731833.1;transl_table=11 NC_008258.1 RefSeq gene 1829834 1830364 . - . ID=gene1985;Name=SFV_RS09975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09975;old_locus_tag=SFV_1789 NC_008258.1 Protein Homology CDS 1829834 1830364 . - 0 ID=cds1951;Parent=gene1985;Dbxref=Genbank:WP_000428998.1;Name=WP_000428998.1;Note=B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm;gbkey=CDS;product=cytochrome B561;protein_id=WP_000428998.1;transl_table=11 NC_008258.1 RefSeq gene 1830553 1831554 . + . ID=gene1986;Name=SFV_RS09980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09980;old_locus_tag=SFV_1790;pseudo=true NC_008258.1 Protein Homology CDS 1830553 1831554 . + 0 ID=cds1952;Parent=gene1986;Note=NAD-dependent%3B catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate%3B active during glycolysis;gbkey=CDS;product=glyceraldehyde-3-phosphate dehydrogenase;pseudo=true;transl_except=(pos:1831486..1831488%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1831596 1833035 . - . ID=gene1987;Name=SFV_RS09985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09985;old_locus_tag=SFV_1791 NC_008258.1 Protein Homology CDS 1831596 1833035 . - 0 ID=cds1953;Parent=gene1987;Dbxref=Genbank:WP_000115920.1;Name=WP_000115920.1;Note=NAD-linked;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_000115920.1;transl_table=11 NC_008258.1 RefSeq gene 1833340 1833765 . - . ID=gene1988;Name=SFV_RS09990;end_range=1833765,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS09990;old_locus_tag=SFV_1792;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1833340 1833765 . - 0 ID=cds1954;Parent=gene1988;end_range=1833765,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1833759 1835017 . + . ID=id310;gbkey=repeat_region NC_008258.1 RefSeq region 1833763 1835015 . + . ID=id311;gbkey=mobile_element NC_008258.1 RefSeq gene 1834154 1834972 . + . ID=gene1989;Name=SFV_RS09995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS09995 NC_008258.1 Protein Homology CDS 1834154 1834972 . + 0 ID=cds1955;Parent=gene1989;Dbxref=Genbank:WP_000336684.1;Name=WP_000336684.1;gbkey=CDS;product=transposase;protein_id=WP_000336684.1;transl_table=11 NC_008258.1 RefSeq gene 1835173 1839075 . - . ID=gene1990;Name=SFV_RS10000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10000;old_locus_tag=SFV_1794 NC_008258.1 Protein Homology CDS 1835173 1839075 . - 0 ID=cds1956;Parent=gene1990;Dbxref=Genbank:WP_000139514.1;Name=WP_000139514.1;Note=involved in the post-transcriptional processing of the daa operon mRNA%2C which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain;gbkey=CDS;product=ATP-dependent RNA helicase HrpA;protein_id=WP_000139514.1;transl_table=11 NC_008258.1 RefSeq gene 1839276 1839881 . + . ID=gene1991;Name=SFV_RS10005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10005;old_locus_tag=SFV_1795 NC_008258.1 Protein Homology CDS 1839276 1839881 . + 0 ID=cds1957;Parent=gene1991;Dbxref=Genbank:WP_000048979.1;Name=WP_000048979.1;Note=FMN-dependent%3B requires NADH%3B catalyzes the cleavage of azo bond in aromatic azo compounds;gbkey=CDS;product=FMN-dependent NADH-azoreductase;protein_id=WP_000048979.1;transl_table=11 NC_008258.1 RefSeq gene 1839935 1840609 . - . ID=gene1992;Name=SFV_RS10010;end_range=1840609,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10010;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1839935 1840609 . - 0 ID=cds1958;Parent=gene1992;end_range=1840609,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(1840595..1840597)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 1840577 1841848 . + . ID=id312;gbkey=repeat_region NC_008258.1 RefSeq region 1840580 1841843 . + . ID=id313;gbkey=mobile_element NC_008258.1 RefSeq gene 1840644 1840946 . + . ID=gene1993;Name=SFV_RS10015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10015;old_locus_tag=SFV_1796 NC_008258.1 Protein Homology CDS 1840644 1840946 . + 0 ID=cds1959;Parent=gene1993;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 1841087 1841800 . + . ID=gene1994;Name=SFV_RS10020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10020;old_locus_tag=SFV_1797 NC_008258.1 Protein Homology CDS 1841087 1841800 . + 0 ID=cds1960;Parent=gene1994;Dbxref=Genbank:WP_000940431.1;Name=WP_000940431.1;gbkey=CDS;product=transposase;protein_id=WP_000940431.1;transl_table=11 NC_008258.1 RefSeq gene 1841844 1842488 . - . ID=gene1995;Name=SFV_RS10025;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10025;partial=true;pseudo=true;start_range=.,1841844 NC_008258.1 Protein Homology CDS 1841844 1842488 . - 0 ID=cds1961;Parent=gene1995;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1841844;transl_table=11 NC_008258.1 RefSeq gene 1842502 1844259 . - . ID=gene1996;Name=SFV_RS10030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10030;old_locus_tag=SFV_1799 NC_008258.1 Protein Homology CDS 1842502 1844259 . - 0 ID=cds1962;Parent=gene1996;Dbxref=Genbank:WP_000431885.1;Name=WP_000431885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000431885.1;transl_table=11 NC_008258.1 RefSeq gene 1844275 1844997 . - . ID=gene1997;Name=SFV_RS10035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10035;old_locus_tag=SFV_1800 NC_008258.1 Protein Homology CDS 1844275 1844997 . - 0 ID=cds1963;Parent=gene1997;Dbxref=Genbank:WP_005088077.1;Name=WP_005088077.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005088077.1;transl_table=11 NC_008258.1 RefSeq gene 1845170 1845775 . - . ID=gene1998;Name=SFV_RS10040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10040;old_locus_tag=SFV_1801 NC_008258.1 Protein Homology CDS 1845170 1845775 . - 0 ID=cds1964;Parent=gene1998;Dbxref=Genbank:WP_000177546.1;Name=WP_000177546.1;gbkey=CDS;product=membrane protein;protein_id=WP_000177546.1;transl_table=11 NC_008258.1 RefSeq gene 1845946 1848255 . - . ID=gene1999;Name=SFV_RS10045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10045;old_locus_tag=SFV_1802 NC_008258.1 Protein Homology CDS 1845946 1848255 . - 0 ID=cds1965;Parent=gene1999;Dbxref=Genbank:WP_005105508.1;Name=WP_005105508.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105508.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1848116 1848897 . + . ID=id314;gbkey=repeat_region NC_008258.1 RefSeq region 1848120 1848887 . + . ID=id315;gbkey=mobile_element NC_008258.1 RefSeq gene 1848349 1848872 . + . ID=gene2000;Name=SFV_RS10050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10050;pseudo=true NC_008258.1 Protein Homology CDS 1848349 1848872 . + 0 ID=cds1966;Parent=gene2000;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1848884 1849198 . - . ID=gene2001;Name=SFV_RS10055;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10055;old_locus_tag=SFV_1804;partial=true;pseudo=true;start_range=.,1848884 NC_008258.1 Protein Homology CDS 1848884 1849198 . - 0 ID=cds1967;Parent=gene2001;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=heat-inducible protein;pseudo=true;start_range=.,1848884;transl_table=11 NC_008258.1 RefSeq gene 1849309 1850298 . - . ID=gene2002;Name=SFV_RS10060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10060;old_locus_tag=SFV_1805 NC_008258.1 Protein Homology CDS 1849309 1850298 . - 0 ID=cds1968;Parent=gene2002;Dbxref=Genbank:WP_000762218.1;Name=WP_000762218.1;Note=fermentative%3B catalyzes the formationof pyruvate from lactate;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_000762218.1;transl_table=11 NC_008258.1 RefSeq gene 1850506 1853145 . + . ID=gene2003;Name=SFV_RS10065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10065;old_locus_tag=SFV_1806 NC_008258.1 Protein Homology CDS 1850506 1853145 . + 0 ID=cds1969;Parent=gene2003;Dbxref=Genbank:WP_000900898.1;Name=WP_000900898.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000900898.1;transl_table=11 NC_008258.1 RefSeq gene 1853142 1853327 . + . ID=gene2004;Name=SFV_RS10070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10070;old_locus_tag=SFV_1807 NC_008258.1 Protein Homology CDS 1853142 1853327 . + 0 ID=cds1970;Parent=gene2004;Dbxref=Genbank:WP_000698145.1;Name=WP_000698145.1;gbkey=CDS;product=lipoprotein;protein_id=WP_000698145.1;transl_table=11 NC_008258.1 RefSeq gene 1853335 1853661 . + . ID=gene2005;Name=SFV_RS10075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10075 NC_008258.1 Protein Homology CDS 1853335 1853661 . + 0 ID=cds1971;Parent=gene2005;Dbxref=Genbank:WP_005047713.1;Name=WP_005047713.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005047713.1;transl_table=11 NC_008258.1 RefSeq gene 1853923 1854039 . + . ID=gene2006;Name=SFV_RS10080;end_range=1854039,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10080;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1853923 1854039 . + 0 ID=cds1972;Parent=gene2006;end_range=1854039,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=phenylacetic acid degradation protein PaaX;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1854056 1854830 . + . ID=id316;gbkey=repeat_region NC_008258.1 RefSeq region 1854058 1854825 . + . ID=id317;gbkey=mobile_element NC_008258.1 RefSeq gene 1854164 1854388 . + . ID=gene2007;Name=SFV_RS10085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10085 NC_008258.1 Protein Homology CDS 1854164 1854388 . + 0 ID=cds1973;Parent=gene2007;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 1854415 1854810 . + . ID=gene2008;Name=SFV_RS10090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10090 NC_008258.1 Protein Homology CDS 1854415 1854810 . + 0 ID=cds1974;Parent=gene2008;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 1854812 1854946 . + . ID=gene2009;Name=SFV_RS10095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10095 NC_008258.1 Protein Homology CDS 1854812 1854946 . + 0 ID=cds1975;Parent=gene2009;Dbxref=Genbank:WP_005047705.1;Name=WP_005047705.1;gbkey=CDS;product=heat-shock protein;protein_id=WP_005047705.1;transl_table=11 NC_008258.1 RefSeq gene 1854943 1855209 . - . ID=gene2010;Name=SFV_RS10100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10100 NC_008258.1 Protein Homology CDS 1854943 1855209 . - 0 ID=cds1976;Parent=gene2010;Dbxref=Genbank:WP_014532269.1;Name=WP_014532269.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014532269.1;transl_table=11 NC_008258.1 RefSeq gene 1855483 1859007 . + . ID=gene2011;Name=SFV_RS10105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10105;old_locus_tag=SFV_1811 NC_008258.1 Protein Homology CDS 1855483 1859007 . + 0 ID=cds1977;Parent=gene2011;Dbxref=Genbank:WP_000628266.1;Name=WP_000628266.1;gbkey=CDS;product=pyruvate-flavodoxin oxidoreductase;protein_id=WP_000628266.1;transl_table=11 NC_008258.1 RefSeq gene 1859374 1860503 . + . ID=gene2012;Name=SFV_RS10110;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10110;pseudo=true NC_008258.1 Protein Homology CDS 1859374 1860503 . + 0 ID=cds1978;Parent=gene2012;Note=allows for ions and hydrophilic solutes to cross the outer membrane;exception=annotated by transcript or proteomic data;gbkey=CDS;product=porin;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1860644 1861078 . + . ID=gene2013;Name=SFV_RS10115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10115;old_locus_tag=SFV_1813 NC_008258.1 Protein Homology CDS 1860644 1861078 . + 0 ID=cds1979;Parent=gene2013;Dbxref=Genbank:WP_001295593.1;Name=WP_001295593.1;gbkey=CDS;product=universal stress protein F;protein_id=WP_001295593.1;transl_table=11 NC_008258.1 RefSeq gene 1861254 1862189 . + . ID=gene2014;Name=SFV_RS10120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10120;old_locus_tag=SFV_1814 NC_008258.1 Protein Homology CDS 1861254 1862189 . + 0 ID=cds1980;Parent=gene2014;Dbxref=Genbank:WP_000081423.1;Name=WP_000081423.1;Note=TtcA%3B YdaO%3B catalyzes the thiolation of cytosine 32 in specific tRNAs%3B forms 2-thiocytidine (s(2)C);gbkey=CDS;product=tRNA 2-thiocytidine biosynthesis protein TtcA;protein_id=WP_000081423.1;transl_table=11 NC_008258.1 RefSeq gene 1862318 1863685 . - . ID=gene2015;Name=SFV_RS10125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10125;old_locus_tag=SFV_1815 NC_008258.1 Protein Homology CDS 1862318 1863685 . - 0 ID=cds1981;Parent=gene2015;Dbxref=Genbank:WP_000123730.1;Name=WP_000123730.1;Note=exhibits an RNA-dependent ATPase activity%2C specifically stimulated by bacterial 23S rRNA;gbkey=CDS;product=RNA helicase;protein_id=WP_000123730.1;transl_table=11 NC_008258.1 RefSeq gene 1863715 1863888 . - . ID=gene2016;Name=SFV_RS10130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10130 NC_008258.1 Protein Homology CDS 1863715 1863888 . - 0 ID=cds1982;Parent=gene2016;Dbxref=Genbank:WP_001296046.1;Name=WP_001296046.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296046.1;transl_table=11 NC_008258.1 RefSeq gene 1864163 1865146 . - . ID=gene2017;Name=zntB;gbkey=Gene;gene=zntB;gene_biotype=protein_coding;locus_tag=SFV_RS10135;old_locus_tag=SFV_1816 NC_008258.1 Protein Homology CDS 1864163 1865146 . - 0 ID=cds1983;Parent=gene2017;Dbxref=Genbank:WP_000387378.1;Name=WP_000387378.1;gbkey=CDS;gene=zntB;product=zinc transporter ZntB;protein_id=WP_000387378.1;transl_table=11 NC_008258.1 RefSeq gene 1865401 1866633 . + . ID=gene2018;Name=SFV_RS10140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10140;old_locus_tag=SFV_1817 NC_008258.1 Protein Homology CDS 1865401 1866633 . + 0 ID=cds1984;Parent=gene2018;Dbxref=Genbank:WP_011587234.1;Name=WP_011587234.1;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_011587234.1;transl_table=11 NC_008258.1 RefSeq gene 1866654 1867217 . - . ID=gene2019;Name=SFV_RS10145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10145;old_locus_tag=SFV_1818 NC_008258.1 Protein Homology CDS 1866654 1867217 . - 0 ID=cds1985;Parent=gene2019;Dbxref=Genbank:WP_001046816.1;Name=WP_001046816.1;gbkey=CDS;product=DNA endonuclease SmrA;protein_id=WP_001046816.1;transl_table=11 NC_008258.1 RefSeq gene 1867412 1867808 . - . ID=gene2020;Name=SFV_RS10150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10150;pseudo=true NC_008258.1 Protein Homology CDS 1867412 1867808 . - 0 ID=cds1986;Parent=gene2020;exception=annotated by transcript or proteomic data;gbkey=CDS;product=drug resistance transporter EmrB/QacA subfamily protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1867956 1868927 . - . ID=gene2021;Name=SFV_RS10155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10155;old_locus_tag=SFV_1819 NC_008258.1 Protein Homology CDS 1867956 1868927 . - 0 ID=cds1987;Parent=gene2021;Dbxref=Genbank:WP_044023948.1;Name=WP_044023948.1;gbkey=CDS;product=MFS transporter;protein_id=WP_044023948.1;transl_table=11 NC_008258.1 RefSeq gene 1868924 1869376 . - . ID=gene2022;Name=SFV_RS10160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10160;old_locus_tag=SFV_1820 NC_008258.1 Protein Homology CDS 1868924 1869376 . - 0 ID=cds1988;Parent=gene2022;Dbxref=Genbank:WP_005047672.1;Name=WP_005047672.1;gbkey=CDS;product=hemolysin D;protein_id=WP_005047672.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1869313 1871001 . + . ID=id318;gbkey=repeat_region NC_008258.1 RefSeq region 1869313 1871001 . + . ID=id319;gbkey=mobile_element NC_008258.1 RefSeq gene 1869432 1869620 . + . ID=gene2023;Name=SFV_RS10165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10165 NC_008258.1 Protein Homology CDS 1869432 1869620 . + 0 ID=cds1989;Parent=gene2023;Dbxref=Genbank:WP_000957853.1;Name=WP_000957853.1;gbkey=CDS;product=transposase;protein_id=WP_000957853.1;transl_table=11 NC_008258.1 RefSeq gene 1869630 1870829 . + . ID=gene2024;Name=SFV_RS10170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10170;old_locus_tag=SFV_1821 NC_008258.1 Protein Homology CDS 1869630 1870829 . + 0 ID=cds1990;Parent=gene2024;Dbxref=Genbank:WP_000947175.1;Name=WP_000947175.1;gbkey=CDS;product=transposase;protein_id=WP_000947175.1;transl_table=11 NC_008258.1 RefSeq gene 1871002 1871640 . - . ID=gene2025;Name=SFV_RS10175;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10175;old_locus_tag=SFV_1822;partial=true;pseudo=true;start_range=.,1871002 NC_008258.1 Protein Homology CDS 1871002 1871640 . - 0 ID=cds1991;Parent=gene2025;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hemolysin D;pseudo=true;start_range=.,1871002;transl_table=11 NC_008258.1 RefSeq gene 1871940 1872551 . + . ID=gene2026;Name=SFV_RS10180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10180;old_locus_tag=SFV_1823 NC_008258.1 Protein Homology CDS 1871940 1872551 . + 0 ID=cds1992;Parent=gene2026;Dbxref=Genbank:WP_044024349.1;Name=WP_044024349.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_044024349.1;transl_table=11 NC_008258.1 RefSeq gene 1872533 1872652 . + . ID=gene2027;Name=SFV_RS10185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10185;partial=true;pseudo=true;start_range=.,1872533 NC_008258.1 Protein Homology CDS 1872533 1872652 . + 0 ID=cds1993;Parent=gene2027;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;start_range=.,1872533;transl_table=11 NC_008258.1 RefSeq gene 1872923 1873084 . + . ID=gene2028;Name=SFV_RS10190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10190 NC_008258.1 Protein Homology CDS 1872923 1873084 . + 0 ID=cds1994;Parent=gene2028;Dbxref=Genbank:WP_001695703.1;Name=WP_001695703.1;gbkey=CDS;product=pump protein;protein_id=WP_001695703.1;transl_table=11 NC_008258.1 RefSeq gene 1873095 1873610 . + . ID=gene2029;Name=SFV_RS10195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10195;old_locus_tag=SFV_1824 NC_008258.1 Protein Homology CDS 1873095 1873610 . + 0 ID=cds1995;Parent=gene2029;Dbxref=Genbank:WP_000945011.1;Name=WP_000945011.1;gbkey=CDS;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=WP_000945011.1;transl_table=11 NC_008258.1 RefSeq gene 1873805 1874557 . + . ID=gene2030;Name=SFV_RS10200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10200;old_locus_tag=SFV_1825 NC_008258.1 Protein Homology CDS 1873805 1874557 . + 0 ID=cds1996;Parent=gene2030;Dbxref=Genbank:WP_000611911.1;Name=WP_000611911.1;Note=Global transcription factor that controls the expression of over 100 target genes in response to anoxia;gbkey=CDS;product=fumarate and nitrate reduction regulatory protein;protein_id=WP_000611911.1;transl_table=11 NC_008258.1 RefSeq gene 1874709 1875659 . + . ID=gene2031;Name=SFV_RS10205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10205;old_locus_tag=SFV_1826 NC_008258.1 Protein Homology CDS 1874709 1875659 . + 0 ID=cds1997;Parent=gene2031;Dbxref=Genbank:WP_001262123.1;Name=WP_001262123.1;Note=with UspC and UspD is involved in resistance to UV irradiation;gbkey=CDS;product=universal stress protein E;protein_id=WP_001262123.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1876157 1877410 . + . ID=id320;gbkey=repeat_region NC_008258.1 RefSeq region 1876158 1877407 . - . ID=id321;gbkey=mobile_element NC_008258.1 RefSeq gene 1876166 1876844 . - . ID=gene2032;Name=SFV_RS10210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10210;old_locus_tag=SFV_1828;pseudo=true NC_008258.1 Protein Homology CDS 1876166 1876844 . - 0 ID=cds1998;Parent=gene2032;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1877033 1877335 . - . ID=gene2033;Name=SFV_RS10215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10215;old_locus_tag=SFV_1829 NC_008258.1 Protein Homology CDS 1877033 1877335 . - 0 ID=cds1999;Parent=gene2033;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 1877463 1878494 . + . ID=gene2034;Name=SFV_RS10220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10220;old_locus_tag=SFV_1830 NC_008258.1 Protein Homology CDS 1877463 1878494 . + 0 ID=cds2000;Parent=gene2034;Dbxref=Genbank:WP_000559908.1;Name=WP_000559908.1;gbkey=CDS;product=mechanosensitive ion channel protein MscS;protein_id=WP_000559908.1;transl_table=11 NC_008258.1 RefSeq gene 1878545 1880158 . - . ID=gene2035;Name=SFV_RS10225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10225;old_locus_tag=SFV_1831 NC_008258.1 Protein Homology CDS 1878545 1880158 . - 0 ID=cds2001;Parent=gene2035;Dbxref=Genbank:WP_000682988.1;Name=WP_000682988.1;Note=is involved in the transport of the murein peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_000682988.1;transl_table=11 NC_008258.1 RefSeq gene 1880281 1880406 . - . ID=gene2036;Name=SFV_RS10230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10230 NC_008258.1 Protein Homology CDS 1880281 1880406 . - 0 ID=cds2002;Parent=gene2036;Dbxref=Genbank:WP_032155686.1;Name=WP_032155686.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155686.1;transl_table=11 NC_008258.1 RefSeq gene 1880495 1880962 . - . ID=gene2037;Name=SFV_RS10235;end_range=1880962,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10235;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1880495 1880962 . - 0 ID=cds2003;Parent=gene2037;end_range=1880962,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1880961 1882227 . + . ID=id322;gbkey=repeat_region NC_008258.1 RefSeq region 1880962 1882225 . + . ID=id323;gbkey=mobile_element NC_008258.1 RefSeq gene 1881026 1881328 . + . ID=gene2038;Name=SFV_RS10240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10240;old_locus_tag=SFV_1833 NC_008258.1 Protein Homology CDS 1881026 1881328 . + 0 ID=cds2004;Parent=gene2038;Dbxref=Genbank:WP_005105515.1;Name=WP_005105515.1;gbkey=CDS;product=transposase;protein_id=WP_005105515.1;transl_table=11 NC_008258.1 RefSeq gene 1881469 1882182 . + . ID=gene2039;Name=SFV_RS10245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10245;old_locus_tag=SFV_1834 NC_008258.1 Protein Homology CDS 1881469 1882182 . + 0 ID=cds2005;Parent=gene2039;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 1882223 1883152 . + . ID=gene2040;Name=SFV_RS10250;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10250;partial=true;pseudo=true;start_range=.,1882223 NC_008258.1 Protein Homology CDS 1882223 1883152 . + 0 ID=cds2006;Parent=gene2040;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=exodeoxyribonuclease VIII;pseudo=true;start_range=.,1882223;transl_table=11 NC_008258.1 RefSeq gene 1883130 1883402 . + . ID=gene2041;Name=SFV_RS10255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10255;old_locus_tag=SFV_1836 NC_008258.1 Protein Homology CDS 1883130 1883402 . + 0 ID=cds2007;Parent=gene2041;Dbxref=Genbank:WP_001277358.1;Name=WP_001277358.1;gbkey=CDS;product=host-nuclease inhibitor protein Gam;protein_id=WP_001277358.1;transl_table=11 NC_008258.1 RefSeq gene 1883432 1884529 . + . ID=gene2042;Name=SFV_RS10260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10260;old_locus_tag=SFV_1837 NC_008258.1 Protein Homology CDS 1883432 1884529 . + 0 ID=cds2008;Parent=gene2042;Dbxref=Genbank:WP_001173296.1;Name=WP_001173296.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001173296.1;transl_table=11 NC_008258.1 RefSeq gene 1884580 1884768 . + . ID=gene2043;Name=SFV_RS10265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10265 NC_008258.1 Protein Homology CDS 1884580 1884768 . + 0 ID=cds2009;Parent=gene2043;Dbxref=Genbank:WP_000276807.1;Name=WP_000276807.1;Note=Rac prophage;gbkey=CDS;product=hypothetical protein;protein_id=WP_000276807.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1884803 1886070 . + . ID=id324;gbkey=repeat_region NC_008258.1 RefSeq region 1884805 1886068 . + . ID=id325;gbkey=mobile_element NC_008258.1 RefSeq gene 1884869 1885171 . + . ID=gene2044;Name=SFV_RS10270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10270;old_locus_tag=SFV_1838 NC_008258.1 Protein Homology CDS 1884869 1885171 . + 0 ID=cds2010;Parent=gene2044;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 1885312 1886025 . + . ID=gene2045;Name=SFV_RS10275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10275;old_locus_tag=SFV_1839 NC_008258.1 Protein Homology CDS 1885312 1886025 . + 0 ID=cds2011;Parent=gene2045;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 1886389 1887465 . + . ID=gene2046;Name=SFV_RS10280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10280;old_locus_tag=SFV_1840 NC_008258.1 Protein Homology CDS 1886389 1887465 . + 0 ID=cds2012;Parent=gene2046;Dbxref=Genbank:WP_001189100.1;Name=WP_001189100.1;gbkey=CDS;product=integrase;protein_id=WP_001189100.1;transl_table=11 NC_008258.1 RefSeq gene 1887687 1887773 . - . ID=gene2047;Name=SFV_RS10285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10285 NC_008258.1 Protein Homology CDS 1887687 1887773 . - 0 ID=cds2013;Parent=gene2047;Dbxref=Genbank:WP_000205304.1;Name=WP_000205304.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000205304.1;transl_table=11 NC_008258.1 RefSeq gene 1887858 1888196 . - . ID=gene2048;Name=SFV_RS10290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10290;old_locus_tag=SFV_1841 NC_008258.1 Protein Homology CDS 1887858 1888196 . - 0 ID=cds2014;Parent=gene2048;Dbxref=Genbank:WP_001380520.1;Name=WP_001380520.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001380520.1;transl_table=11 NC_008258.1 RefSeq gene 1888212 1889084 . - . ID=gene2049;Name=SFV_RS10295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10295;old_locus_tag=SFV_1842 NC_008258.1 Protein Homology CDS 1888212 1889084 . - 0 ID=cds2015;Parent=gene2049;Dbxref=Genbank:WP_000879271.1;Name=WP_000879271.1;gbkey=CDS;product=membrane protein;protein_id=WP_000879271.1;transl_table=11 NC_008258.1 RefSeq gene 1889088 1889462 . - . ID=gene2050;Name=SFV_RS10300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10300;old_locus_tag=SFV_1843 NC_008258.1 Protein Homology CDS 1889088 1889462 . - 0 ID=cds2016;Parent=gene2050;Dbxref=Genbank:WP_000168747.1;Name=WP_000168747.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000168747.1;transl_table=11 NC_008258.1 RefSeq gene 1889601 1889831 . + . ID=gene2051;Name=SFV_RS10305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10305;old_locus_tag=SFV_1844 NC_008258.1 Protein Homology CDS 1889601 1889831 . + 0 ID=cds2017;Parent=gene2051;Dbxref=Genbank:WP_000916757.1;Name=WP_000916757.1;gbkey=CDS;product=DNA polymerase III subunit theta;protein_id=WP_000916757.1;transl_table=11 NC_008258.1 RefSeq gene 1889933 1890589 . + . ID=gene2052;Name=SFV_RS10310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10310;pseudo=true NC_008258.1 Protein Homology CDS 1889933 1890589 . + 0 ID=cds2018;Parent=gene2052;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:1890158..1890160%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1890613 1891275 . + . ID=gene2053;Name=SFV_RS10315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10315;old_locus_tag=SFV_1846 NC_008258.1 Protein Homology CDS 1890613 1891275 . + 0 ID=cds2019;Parent=gene2053;Dbxref=Genbank:WP_000944267.1;Name=WP_000944267.1;Note=3'-5' exonuclease activity on single or double-strand DNA;gbkey=CDS;product=exodeoxyribonuclease X;protein_id=WP_000944267.1;transl_table=11 NC_008258.1 RefSeq gene 1891272 1893332 . - . ID=gene2054;Name=SFV_RS10320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10320;old_locus_tag=SFV_1847 NC_008258.1 Protein Homology CDS 1891272 1893332 . - 0 ID=cds2020;Parent=gene2054;Dbxref=Genbank:WP_000936980.1;Name=WP_000936980.1;Note=PtrB%3B oligopeptidase that cleaves peptide bonds following arginine and lysine residues;gbkey=CDS;product=protease;protein_id=WP_000936980.1;transl_table=11 NC_008258.1 RefSeq gene 1893541 1894200 . - . ID=gene2055;Name=SFV_RS10325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10325;old_locus_tag=SFV_1848 NC_008258.1 Protein Homology CDS 1893541 1894200 . - 0 ID=cds2021;Parent=gene2055;Dbxref=Genbank:WP_000024752.1;Name=WP_000024752.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000024752.1;transl_table=11 NC_008258.1 RefSeq gene 1894260 1894370 . + . ID=gene2056;Name=SFV_RS10330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10330 NC_008258.1 Protein Homology CDS 1894260 1894370 . + 0 ID=cds2022;Parent=gene2056;Dbxref=Genbank:WP_044023955.1;Name=WP_044023955.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044023955.1;transl_table=11 NC_008258.1 RefSeq gene 1894527 1894883 . - . ID=gene2057;Name=SFV_RS10335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10335;old_locus_tag=SFV_1849 NC_008258.1 Protein Homology CDS 1894527 1894883 . - 0 ID=cds2023;Parent=gene2057;Dbxref=Genbank:WP_005062375.1;Name=WP_005062375.1;Note=secreted protein%3B unknown function;gbkey=CDS;product=hypothetical protein;protein_id=WP_005062375.1;transl_table=11 NC_008258.1 RefSeq gene 1894950 1895240 . - . ID=gene2058;Name=SFV_RS10340;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10340;pseudo=true NC_008258.1 Protein Homology CDS 1894950 1895240 . - 0 ID=cds2024;Parent=gene2058;gbkey=CDS;product=damage-inducible protein YebG;pseudo=true;transl_except=(pos:complement(1895118..1895120)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 1895374 1896552 . + . ID=gene2059;Name=SFV_RS10345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10345;old_locus_tag=SFV_1851 NC_008258.1 Protein Homology CDS 1895374 1896552 . + 0 ID=cds2025;Parent=gene2059;Dbxref=Genbank:WP_000173488.1;Name=WP_000173488.1;gbkey=CDS;product=phosphoribosylglycinamide formyltransferase 2;protein_id=WP_000173488.1;transl_table=11 NC_008258.1 RefSeq gene 1896608 1897249 . - . ID=gene2060;Name=SFV_RS10350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10350;old_locus_tag=SFV_1852 NC_008258.1 Protein Homology CDS 1896608 1897249 . - 0 ID=cds2026;Parent=gene2060;Dbxref=Genbank:WP_000800512.1;Name=WP_000800512.1;Note=catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate%3B or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate;gbkey=CDS;product=KHG/KDPG aldolase;protein_id=WP_000800512.1;transl_table=11 NC_008258.1 RefSeq gene 1897286 1899097 . - . ID=gene2061;Name=SFV_RS10355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10355;old_locus_tag=SFV_1853 NC_008258.1 Protein Homology CDS 1897286 1899097 . - 0 ID=cds2027;Parent=gene2061;Dbxref=Genbank:WP_001069458.1;Name=WP_001069458.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate;gbkey=CDS;product=phosphogluconate dehydratase;protein_id=WP_001069458.1;transl_table=11 NC_008258.1 RefSeq gene 1899332 1900807 . - . ID=gene2062;Name=SFV_RS10360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10360;old_locus_tag=SFV_1854 NC_008258.1 Protein Homology CDS 1899332 1900807 . - 0 ID=cds2028;Parent=gene2062;Dbxref=Genbank:WP_000301736.1;Name=WP_000301736.1;Note=catalyzes the formation of D-glucono-1%2C5-lactone 6-phosphate from D-glucose 6-phosphate;gbkey=CDS;product=glucose-6-phosphate 1-dehydrogenase;protein_id=WP_000301736.1;transl_table=11 NC_008258.1 RefSeq gene 1901144 1902013 . + . ID=gene2063;Name=SFV_RS10365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10365;old_locus_tag=SFV_1855 NC_008258.1 Protein Homology CDS 1901144 1902013 . + 0 ID=cds2029;Parent=gene2063;Dbxref=Genbank:WP_001056703.1;Name=WP_001056703.1;Note=Represses the expression of the zwf%2C eda%2C glp and gap;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001056703.1;transl_table=11 NC_008258.1 RefSeq gene 1902141 1903583 . + . ID=gene2064;Name=SFV_RS10370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10370;old_locus_tag=SFV_1856 NC_008258.1 Protein Homology CDS 1902141 1903583 . + 0 ID=cds2030;Parent=gene2064;Dbxref=Genbank:WP_000044415.1;Name=WP_000044415.1;Note=catalyzes the formation of phosphoenolpyruvate from pyruvate;gbkey=CDS;product=pyruvate kinase II;protein_id=WP_000044415.1;transl_table=11 NC_008258.1 RefSeq gene 1903714 1904685 . - . ID=gene2065;Name=SFV_RS10375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10375;old_locus_tag=SFV_1857 NC_008258.1 Protein Homology CDS 1903714 1904685 . - 0 ID=cds2031;Parent=gene2065;Dbxref=Genbank:WP_000448385.1;Name=WP_000448385.1;Note=Transfers myristate or laurate%2C activated on ACP%2C to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA;gbkey=CDS;product=Lipid A biosynthesis myristoyltransferase 1;protein_id=WP_000448385.1;transl_table=11 NC_008258.1 RefSeq gene 1904805 1906127 . - . ID=gene2066;Name=SFV_RS10380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10380;old_locus_tag=SFV_1858 NC_008258.1 Protein Homology CDS 1904805 1906127 . - 0 ID=cds2032;Parent=gene2066;Dbxref=Genbank:WP_001184045.1;Name=WP_001184045.1;gbkey=CDS;product=murein DD-endopeptidase MepM;protein_id=WP_001184045.1;transl_table=11 NC_008258.1 RefSeq gene 1906143 1907090 . - . ID=gene2067;Name=znuA;gbkey=Gene;gene=znuA;gene_biotype=protein_coding;gene_synonym=yebL;locus_tag=SFV_RS10385;old_locus_tag=SFV_1860 NC_008258.1 Protein Homology CDS 1906143 1907090 . - 0 ID=cds2033;Parent=gene2067;Dbxref=Genbank:WP_049760347.1;Name=WP_049760347.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuA;product=zinc ABC transporter substrate-binding protein;protein_id=WP_049760347.1;transl_table=11 NC_008258.1 RefSeq gene 1907154 1907909 . + . ID=gene2068;Name=znuC;gbkey=Gene;gene=znuC;gene_biotype=protein_coding;gene_synonym=yebM;locus_tag=SFV_RS10390;old_locus_tag=SFV_1859 NC_008258.1 Protein Homology CDS 1907154 1907909 . + 0 ID=cds2034;Parent=gene2068;Dbxref=Genbank:WP_000202992.1;Name=WP_000202992.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuC;product=Mn2+/Zn2+ABC transporter ATP-binding protein;protein_id=WP_000202992.1;transl_table=11 NC_008258.1 RefSeq gene 1907906 1908691 . + . ID=gene2069;Name=znuB;gbkey=Gene;gene=znuB;gene_biotype=protein_coding;gene_synonym=yebI;locus_tag=SFV_RS10395;old_locus_tag=SFV_1861 NC_008258.1 Protein Homology CDS 1907906 1908691 . + 0 ID=cds2035;Parent=gene2069;Dbxref=Genbank:WP_000571470.1;Name=WP_000571470.1;Note=involved in transport of zinc(II) with ZnuA and C;gbkey=CDS;gene=znuB;product=zinc transporter;protein_id=WP_000571470.1;transl_table=11 NC_008258.1 RefSeq gene 1908838 1909848 . - . ID=gene2070;Name=SFV_RS10400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10400;old_locus_tag=SFV_1862 NC_008258.1 Protein Homology CDS 1908838 1909848 . - 0 ID=cds2036;Parent=gene2070;Dbxref=Genbank:WP_000568525.1;Name=WP_000568525.1;gbkey=CDS;product=Holliday junction DNA helicase RuvB;protein_id=WP_000568525.1;transl_table=11 NC_008258.1 RefSeq gene 1909857 1910468 . - . ID=gene2071;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=SFV_RS10405;old_locus_tag=SFV_1863 NC_008258.1 Protein Homology CDS 1909857 1910468 . - 0 ID=cds2037;Parent=gene2071;Dbxref=Genbank:WP_000580330.1;Name=WP_000580330.1;Note=plays an essential role in ATP-dependent branch migration of the Holliday junction;gbkey=CDS;gene=ruvA;product=Holliday junction DNA helicase RuvA;protein_id=WP_000580330.1;transl_table=11 NC_008258.1 RefSeq gene 1910742 1911344 . + . ID=gene2072;Name=SFV_RS10410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10410;old_locus_tag=SFV_1864 NC_008258.1 Protein Homology CDS 1910742 1911344 . + 0 ID=cds2038;Parent=gene2072;Dbxref=Genbank:WP_001024930.1;Name=WP_001024930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001024930.1;transl_table=11 NC_008258.1 RefSeq gene 1911346 1911867 . - . ID=gene2073;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=SFV_RS10415;old_locus_tag=SFV_1865 NC_008258.1 Protein Homology CDS 1911346 1911867 . - 0 ID=cds2039;Parent=gene2073;Dbxref=Genbank:WP_000974712.1;Name=WP_000974712.1;Note=endonuclease%3B resolves Holliday structures%3B forms a complex of RuvABC%3B the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration%3B RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity;gbkey=CDS;gene=ruvC;product=crossover junction endodeoxyribonuclease RuvC;protein_id=WP_000974712.1;transl_table=11 NC_008258.1 RefSeq gene 1911902 1912642 . - . ID=gene2074;Name=SFV_RS10420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10420;old_locus_tag=SFV_1866 NC_008258.1 Protein Homology CDS 1911902 1912642 . - 0 ID=cds2040;Parent=gene2074;Dbxref=Genbank:WP_000907253.1;Name=WP_000907253.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000907253.1;transl_table=11 NC_008258.1 RefSeq gene 1912671 1913153 . - . ID=gene2075;Name=nudB;gbkey=Gene;gene=nudB;gene_biotype=protein_coding;locus_tag=SFV_RS10425;old_locus_tag=SFV_1867 NC_008258.1 Protein Homology CDS 1912671 1913153 . - 0 ID=cds2041;Parent=gene2075;Dbxref=Genbank:WP_001289128.1;Name=WP_001289128.1;Note=catalyzes the formation of dihydroneopterin phosphate from dihydroneopterin triphosphate;gbkey=CDS;gene=nudB;product=dihydroneopterin triphosphate pyrophosphatase;protein_id=WP_001289128.1;transl_table=11 NC_008258.1 RefSeq gene 1913241 1915013 . - . ID=gene2076;Name=SFV_RS10430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10430;old_locus_tag=SFV_1868 NC_008258.1 Protein Homology CDS 1913241 1915013 . - 0 ID=cds2042;Parent=gene2076;Dbxref=Genbank:WP_001258679.1;Name=WP_001258679.1;gbkey=CDS;product=aspartate--tRNA ligase;protein_id=WP_001258679.1;transl_table=11 NC_008258.1 RefSeq gene 1915323 1915577 . + . ID=gene2077;Name=SFV_RS10435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10435 NC_008258.1 Protein Homology CDS 1915323 1915577 . + 0 ID=cds2043;Parent=gene2077;Dbxref=Genbank:WP_000891627.1;Name=WP_000891627.1;gbkey=CDS;product=nicotinamidase;protein_id=WP_000891627.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1915537 1916991 . + . ID=id326;gbkey=repeat_region NC_008258.1 RefSeq region 1915623 1916996 . - . ID=id327;gbkey=mobile_element NC_008258.1 RefSeq gene 1915769 1916965 . + . ID=gene2078;Name=SFV_RS10440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10440;old_locus_tag=SFV_1870 NC_008258.1 Protein Homology CDS 1915769 1916965 . + 0 ID=cds2044;Parent=gene2078;Dbxref=Genbank:WP_000140459.1;Name=WP_000140459.1;gbkey=CDS;product=transposase;protein_id=WP_000140459.1;transl_table=11 NC_008258.1 RefSeq gene 1916992 1917339 . + . ID=gene2079;Name=SFV_RS10445;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10445;partial=true;pseudo=true;start_range=.,1916992 NC_008258.1 Protein Homology CDS 1916992 1917339 . + 0 ID=cds2045;Parent=gene2079;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hydrolase;pseudo=true;start_range=.,1916992;transl_table=11 NC_008258.1 RefSeq gene 1917421 1917537 . - . ID=gene2080;Name=SFV_RS10450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10450 NC_008258.1 Protein Homology CDS 1917421 1917537 . - 0 ID=cds2046;Parent=gene2080;Dbxref=Genbank:WP_005084198.1;Name=WP_005084198.1;gbkey=CDS;product=preprotein translocase subunit SecY;protein_id=WP_005084198.1;transl_table=11 NC_008258.1 RefSeq gene 1917694 1917942 . + . ID=gene2081;Name=SFV_RS10455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10455;old_locus_tag=SFV_1871 NC_008258.1 Protein Homology CDS 1917694 1917942 . + 0 ID=cds2047;Parent=gene2081;Dbxref=Genbank:WP_001210039.1;Name=WP_001210039.1;gbkey=CDS;product=DNA-damage-inducible protein DinI;protein_id=WP_001210039.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1917730 1918021 . + . ID=id328;gbkey=repeat_region NC_008258.1 RefSeq gene 1918541 1920292 . + . ID=gene2082;Name=SFV_RS10465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10465;old_locus_tag=SFV_1872 NC_008258.1 Protein Homology CDS 1918541 1920292 . + 0 ID=cds2048;Parent=gene2082;Dbxref=Genbank:WP_000938097.1;Name=WP_000938097.1;gbkey=CDS;product=E3 ubiquitin--protein ligase;protein_id=WP_000938097.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1919313 1934033 . + . ID=id329;gbkey=repeat_region NC_008258.1 RefSeq gene 1920293 1920472 . - . ID=gene2083;Name=SFV_RS10470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10470 NC_008258.1 Protein Homology CDS 1920293 1920472 . - 0 ID=cds2049;Parent=gene2083;Dbxref=Genbank:WP_001039885.1;Name=WP_001039885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039885.1;transl_table=11 NC_008258.1 RefSeq gene 1920472 1921095 . - . ID=gene2084;Name=SFV_RS10475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10475 NC_008258.1 Protein Homology CDS 1920472 1921095 . - 0 ID=cds2050;Parent=gene2084;Dbxref=Genbank:WP_000930151.1;Name=WP_000930151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000930151.1;transl_table=11 NC_008258.1 RefSeq gene 1921046 1922232 . - . ID=gene2085;Name=SFV_RS10480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10480;pseudo=true NC_008258.1 Protein Homology CDS 1921046 1922232 . - 0 ID=cds2051;Parent=gene2085;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phage tail protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1922524 1923123 . - . ID=gene2086;Name=SFV_RS10490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10490;old_locus_tag=SFV_1874 NC_008258.1 Protein Homology CDS 1922524 1923123 . - 0 ID=cds2052;Parent=gene2086;Dbxref=Genbank:WP_001230369.1;Name=WP_001230369.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001230369.1;transl_table=11 NC_008258.1 RefSeq gene 1923191 1926670 . - . ID=gene2087;Name=SFV_RS10495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10495;old_locus_tag=SFV_1875 NC_008258.1 Protein Homology CDS 1923191 1926670 . - 0 ID=cds2053;Parent=gene2087;Dbxref=Genbank:WP_000515521.1;Name=WP_000515521.1;gbkey=CDS;product=host specificity protein J;protein_id=WP_000515521.1;transl_table=11 NC_008258.1 RefSeq gene 1926731 1927273 . - . ID=gene2088;Name=SFV_RS10500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10500;old_locus_tag=SFV_1876 NC_008258.1 Protein Homology CDS 1926731 1927273 . - 0 ID=cds2054;Parent=gene2088;Dbxref=Genbank:WP_000847648.1;Name=WP_000847648.1;gbkey=CDS;product=tail protein;protein_id=WP_000847648.1;transl_table=11 NC_008258.1 RefSeq gene 1927270 1928013 . - . ID=gene2089;Name=SFV_RS10505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10505;old_locus_tag=SFV_1877 NC_008258.1 Protein Homology CDS 1927270 1928013 . - 0 ID=cds2055;Parent=gene2089;Dbxref=Genbank:WP_000194737.1;Name=WP_000194737.1;gbkey=CDS;product=tail protein;protein_id=WP_000194737.1;transl_table=11 NC_008258.1 RefSeq gene 1928018 1928716 . - . ID=gene2090;Name=SFV_RS10510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10510 NC_008258.1 Protein Homology CDS 1928018 1928716 . - 0 ID=cds2056;Parent=gene2090;Dbxref=Genbank:WP_001152490.1;Name=WP_001152490.1;gbkey=CDS;product=tail protein;protein_id=WP_001152490.1;transl_table=11 NC_008258.1 RefSeq gene 1928705 1928959 . - . ID=gene2091;Name=SFV_RS10515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10515;partial=true;pseudo=true;start_range=.,1928705 NC_008258.1 Protein Homology CDS 1928705 1928959 . - 0 ID=cds2057;Parent=gene2091;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=phage tail protein;pseudo=true;start_range=.,1928705;transl_table=11 NC_008258.1 RefSeq gene 1928959 1932001 . - . ID=gene2092;Name=SFV_RS10520;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10520;pseudo=true NC_008258.1 Protein Homology CDS 1928959 1932001 . - 0 ID=cds2058;Parent=gene2092;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phage tail protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1931973 1932302 . - . ID=gene2093;Name=SFV_RS10525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10525;old_locus_tag=SFV_1880 NC_008258.1 Protein Homology CDS 1931973 1932302 . - 0 ID=cds2059;Parent=gene2093;Dbxref=Genbank:WP_001161004.1;Name=WP_001161004.1;gbkey=CDS;product=tail protein;protein_id=WP_001161004.1;transl_table=11 NC_008258.1 RefSeq gene 1932311 1932697 . - . ID=gene2094;Name=SFV_RS10530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10530;old_locus_tag=SFV_1881 NC_008258.1 Protein Homology CDS 1932311 1932697 . - 0 ID=cds2060;Parent=gene2094;Dbxref=Genbank:WP_000478927.1;Name=WP_000478927.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000478927.1;transl_table=11 NC_008258.1 RefSeq gene 1932756 1933496 . - . ID=gene2095;Name=SFV_RS10535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10535;old_locus_tag=SFV_1882 NC_008258.1 Protein Homology CDS 1932756 1933496 . - 0 ID=cds2061;Parent=gene2095;Dbxref=Genbank:WP_000211137.1;Name=WP_000211137.1;gbkey=CDS;product=tail protein;protein_id=WP_000211137.1;transl_table=11 NC_008258.1 RefSeq gene 1933507 1933908 . - . ID=gene2096;Name=SFV_RS10540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10540;old_locus_tag=SFV_1883 NC_008258.1 Protein Homology CDS 1933507 1933908 . - 0 ID=cds2062;Parent=gene2096;Dbxref=Genbank:WP_001079402.1;Name=WP_001079402.1;gbkey=CDS;product=tail protein;protein_id=WP_001079402.1;transl_table=11 NC_008258.1 RefSeq gene 1933905 1934492 . - . ID=gene2097;Name=SFV_RS10545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10545;old_locus_tag=SFV_1884 NC_008258.1 Protein Homology CDS 1933905 1934492 . - 0 ID=cds2063;Parent=gene2097;Dbxref=Genbank:WP_000677115.1;Name=WP_000677115.1;gbkey=CDS;product=phage tail protein;protein_id=WP_000677115.1;transl_table=11 NC_008258.1 RefSeq gene 1934479 1934850 . - . ID=gene2098;Name=SFV_RS10550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10550;old_locus_tag=SFV_1885 NC_008258.1 Protein Homology CDS 1934479 1934850 . - 0 ID=cds2064;Parent=gene2098;Dbxref=Genbank:WP_000753026.1;Name=WP_000753026.1;gbkey=CDS;product=tail attachment protein;protein_id=WP_000753026.1;transl_table=11 NC_008258.1 RefSeq gene 1934862 1935263 . - . ID=gene2099;Name=SFV_RS10555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10555;old_locus_tag=SFV_1886 NC_008258.1 Protein Homology CDS 1934862 1935263 . - 0 ID=cds2065;Parent=gene2099;Dbxref=Genbank:WP_001074423.1;Name=WP_001074423.1;gbkey=CDS;product=DNA-packaging protein FI;protein_id=WP_001074423.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1935298 1937844 . + . ID=id330;gbkey=repeat_region NC_008258.1 RefSeq region 1935381 1936753 . - . ID=id331;gbkey=mobile_element NC_008258.1 RefSeq gene 1935527 1936723 . + . ID=gene2100;Name=SFV_RS10560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10560;old_locus_tag=SFV_1887 NC_008258.1 Protein Homology CDS 1935527 1936723 . + 0 ID=cds2066;Parent=gene2100;Dbxref=Genbank:WP_005049126.1;Name=WP_005049126.1;gbkey=CDS;product=transposase;protein_id=WP_005049126.1;transl_table=11 NC_008258.1 RefSeq gene 1937422 1937496 . - . ID=gene2101;Name=SFV_RS10565;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10565;old_locus_tag=SFV_1888 NC_008258.1 tRNAscan-SE tRNA 1937422 1937496 . - . ID=rna34;Parent=gene2101;anticodon=(pos:complement(1937461..1937463));gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 1937422 1937496 . - . ID=id332;Parent=rna34;anticodon=(pos:complement(1937461..1937463));gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 1937500 1937575 . - . ID=gene2102;Name=SFV_RS10570;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10570;old_locus_tag=SFV_1889 NC_008258.1 tRNAscan-SE tRNA 1937500 1937575 . - . ID=rna35;Parent=gene2102;anticodon=(pos:complement(1937540..1937542));gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 1937500 1937575 . - . ID=id333;Parent=rna35;anticodon=(pos:complement(1937540..1937542));gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 1937578 1937654 . - . ID=gene2103;Name=SFV_RS10575;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10575;old_locus_tag=SFV_1890 NC_008258.1 tRNAscan-SE tRNA 1937578 1937654 . - . ID=rna36;Parent=gene2103;anticodon=(pos:complement(1937618..1937620));gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 1937578 1937654 . - . ID=id334;Parent=rna36;anticodon=(pos:complement(1937618..1937620));gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 1937656 1937731 . - . ID=gene2104;Name=SFV_RS10580;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10580;old_locus_tag=SFV_1891 NC_008258.1 tRNAscan-SE tRNA 1937656 1937731 . - . ID=rna37;Parent=gene2104;anticodon=(pos:complement(1937696..1937698));gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 1937656 1937731 . - . ID=id335;Parent=rna37;anticodon=(pos:complement(1937696..1937698));gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 1937908 1938597 . - . ID=gene2105;Name=SFV_RS10585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10585;old_locus_tag=SFV_1892 NC_008258.1 Protein Homology CDS 1937908 1938597 . - 0 ID=cds2067;Parent=gene2105;Dbxref=Genbank:WP_001064885.1;Name=WP_001064885.1;gbkey=CDS;product=antiterminator;protein_id=WP_001064885.1;transl_table=11 NC_008258.1 RefSeq gene 1938594 1938953 . - . ID=gene2106;Name=SFV_RS10590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10590;old_locus_tag=SFV_1893 NC_008258.1 Protein Homology CDS 1938594 1938953 . - 0 ID=cds2068;Parent=gene2106;Dbxref=Genbank:WP_001215517.1;Name=WP_001215517.1;gbkey=CDS;product=endodeoxyribonuclease;protein_id=WP_001215517.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1938939 1940358 . + . ID=id336;gbkey=repeat_region NC_008258.1 RefSeq gene 1938953 1939141 . - . ID=gene2107;Name=SFV_RS24500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24500;old_locus_tag=SFV_1894 NC_008258.1 Protein Homology CDS 1938953 1939141 . - 0 ID=cds2069;Parent=gene2107;Dbxref=Genbank:WP_005048633.1;Name=WP_005048633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048633.1;transl_table=11 NC_008258.1 RefSeq region 1939093 1940356 . + . ID=id337;gbkey=mobile_element NC_008258.1 RefSeq gene 1939157 1939459 . + . ID=gene2108;Name=SFV_RS10595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10595;old_locus_tag=SFV_1895 NC_008258.1 Protein Homology CDS 1939157 1939459 . + 0 ID=cds2070;Parent=gene2108;Dbxref=Genbank:WP_000088261.1;Name=WP_000088261.1;gbkey=CDS;product=transposase;protein_id=WP_000088261.1;transl_table=11 NC_008258.1 RefSeq gene 1939600 1940313 . + . ID=gene2109;Name=SFV_RS10600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10600;old_locus_tag=SFV_1896 NC_008258.1 Protein Homology CDS 1939600 1940313 . + 0 ID=cds2071;Parent=gene2109;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 1940354 1941046 . - . ID=gene2110;Name=SFV_RS10605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10605;old_locus_tag=SFV_1897 NC_008258.1 Protein Homology CDS 1940354 1941046 . - 0 ID=cds2072;Parent=gene2110;Dbxref=Genbank:WP_001128925.1;Name=WP_001128925.1;gbkey=CDS;product=integrase;protein_id=WP_001128925.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1940360 1941430 . + . ID=id338;gbkey=repeat_region NC_008258.1 RefSeq region 1940360 1941426 . - . ID=id339;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 1941046 1941372 . - . ID=gene2111;Name=SFV_RS10610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10610;old_locus_tag=SFV_1898 NC_008258.1 Protein Homology CDS 1941046 1941372 . - 0 ID=cds2073;Parent=gene2111;Dbxref=Genbank:WP_000165261.1;Name=WP_000165261.1;gbkey=CDS;product=transposase;protein_id=WP_000165261.1;transl_table=11 NC_008258.1 RefSeq gene 1941424 1942197 . - . ID=gene2112;Name=SFV_RS10615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10615;old_locus_tag=SFV_1899 NC_008258.1 Protein Homology CDS 1941424 1942197 . - 0 ID=cds2074;Parent=gene2112;Dbxref=Genbank:WP_000460599.1;Name=WP_000460599.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000460599.1;transl_table=11 NC_008258.1 RefSeq gene 1942294 1943988 . - . ID=gene2113;Name=SFV_RS10620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10620;old_locus_tag=SFV_1900 NC_008258.1 Protein Homology CDS 1942294 1943988 . - 0 ID=cds2075;Parent=gene2113;Dbxref=Genbank:WP_000040175.1;Name=WP_000040175.1;gbkey=CDS;product=phage tail tape measure protein;protein_id=WP_000040175.1;transl_table=11 NC_008258.1 RefSeq gene 1944804 1945515 . - . ID=gene2114;Name=SFV_RS10625;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10625;pseudo=true NC_008258.1 Protein Homology CDS 1944804 1945515 . - 0 ID=cds2076;Parent=gene2114;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1946062 1946370 . - . ID=gene2115;Name=SFV_RS10630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10630 NC_008258.1 Protein Homology CDS 1946062 1946370 . - 0 ID=cds2077;Parent=gene2115;Dbxref=Genbank:WP_001067391.1;Name=WP_001067391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001067391.1;transl_table=11 NC_008258.1 RefSeq gene 1946528 1946815 . - . ID=gene2116;Name=SFV_RS10635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10635 NC_008258.1 Protein Homology CDS 1946528 1946815 . - 0 ID=cds2078;Parent=gene2116;Dbxref=Genbank:WP_000805963.1;Name=WP_000805963.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000805963.1;transl_table=11 NC_008258.1 RefSeq gene 1946812 1947026 . - . ID=gene2117;Name=SFV_RS10640;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10640;pseudo=true NC_008258.1 Protein Homology CDS 1946812 1947026 . - 0 ID=cds2079;Parent=gene2117;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1947026 1947313 . - . ID=gene2118;Name=SFV_RS10645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10645 NC_008258.1 Protein Homology CDS 1947026 1947313 . - 0 ID=cds2080;Parent=gene2118;Dbxref=Genbank:WP_000790883.1;Name=WP_000790883.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000790883.1;transl_table=11 NC_008258.1 RefSeq gene 1947315 1947869 . - . ID=gene2119;Name=SFV_RS10650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10650;old_locus_tag=SFV_1902 NC_008258.1 Protein Homology CDS 1947315 1947869 . - 0 ID=cds2081;Parent=gene2119;Dbxref=Genbank:WP_000999800.1;Name=WP_000999800.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000999800.1;transl_table=11 NC_008258.1 RefSeq gene 1948151 1948393 . + . ID=gene2120;Name=SFV_RS10655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10655 NC_008258.1 Protein Homology CDS 1948151 1948393 . + 0 ID=cds2082;Parent=gene2120;Dbxref=Genbank:WP_000247754.1;Name=WP_000247754.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000247754.1;transl_table=11 NC_008258.1 RefSeq gene 1950212 1951045 . - . ID=gene2121;Name=SFV_RS10660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10660;old_locus_tag=SFV_1903 NC_008258.1 Protein Homology CDS 1950212 1951045 . - 0 ID=cds2083;Parent=gene2121;Dbxref=Genbank:WP_001279597.1;Name=WP_001279597.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001279597.1;transl_table=11 NC_008258.1 RefSeq gene 1951139 1951486 . + . ID=gene2122;Name=SFV_RS10665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10665;old_locus_tag=SFV_1904;partial=true;pseudo=true;start_range=.,1951139 NC_008258.1 Protein Homology CDS 1951139 1951486 . + 0 ID=cds2084;Parent=gene2122;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,1951139;transl_table=11 NC_008258.1 RefSeq gene 1951539 1951934 . + . ID=gene2123;Name=SFV_RS10670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10670;old_locus_tag=SFV_1905 NC_008258.1 Protein Homology CDS 1951539 1951934 . + 0 ID=cds2085;Parent=gene2123;Dbxref=Genbank:WP_000252980.1;Name=WP_000252980.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000252980.1;transl_table=11 NC_008258.1 RefSeq gene 1951975 1952718 . + . ID=gene2124;Name=SFV_RS10675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10675;old_locus_tag=SFV_1906 NC_008258.1 Protein Homology CDS 1951975 1952718 . + 0 ID=cds2086;Parent=gene2124;Dbxref=Genbank:WP_000019588.1;Name=WP_000019588.1;Note=catalyzes the conversion of 5-methoxyuridine to uridine-5-oxyacetic acid in tRNA;gbkey=CDS;product=tRNA (cmo5U34)-methyltransferase;protein_id=WP_000019588.1;transl_table=11 NC_008258.1 RefSeq gene 1952715 1953686 . + . ID=gene2125;Name=SFV_RS10680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10680;old_locus_tag=SFV_1907 NC_008258.1 Protein Homology CDS 1952715 1953686 . + 0 ID=cds2087;Parent=gene2125;Dbxref=Genbank:WP_000564755.1;Name=WP_000564755.1;Note=catalyzes the conversion of 5-hydroxyuridine to 5-methoxyuridine in tRNA;gbkey=CDS;product=tRNA (mo5U34)-methyltransferase;protein_id=WP_000564755.1;transl_table=11 NC_008258.1 RefSeq gene 1953851 1954966 . - . ID=gene2126;Name=SFV_RS10685;end_range=1954966,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10685;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 1953851 1954966 . - 0 ID=cds2088;Parent=gene2126;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;end_range=1954966,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=trimethylamine N-oxide reductase I catalytic subunit;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 1954963 1956301 . + . ID=id340;gbkey=repeat_region NC_008258.1 RefSeq region 1954967 1956297 . + . ID=id341;gbkey=mobile_element NC_008258.1 RefSeq gene 1955058 1955423 . + . ID=gene2127;Name=SFV_RS10690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10690;old_locus_tag=SFV_1908 NC_008258.1 Protein Homology CDS 1955058 1955423 . + 0 ID=cds2089;Parent=gene2127;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 1955426 1955728 . - . ID=gene2128;Name=SFV_RS10695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10695 NC_008258.1 Protein Homology CDS 1955426 1955728 . - 0 ID=cds2090;Parent=gene2128;Dbxref=Genbank:WP_000336276.1;Name=WP_000336276.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000336276.1;transl_table=11 NC_008258.1 RefSeq gene 1956297 1957616 . - . ID=gene2129;Name=SFV_RS10700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10700;partial=true;pseudo=true;start_range=.,1956297 NC_008258.1 Protein Homology CDS 1956297 1957616 . - 0 ID=cds2091;Parent=gene2129;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=trimethylamine N-oxide reductase I catalytic subunit;pseudo=true;start_range=.,1956297;transl_table=11 NC_008258.1 RefSeq gene 1957641 1958741 . - . ID=gene2130;Name=SFV_RS10705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10705;old_locus_tag=SFV_1911 NC_008258.1 Protein Homology CDS 1957641 1958741 . - 0 ID=cds2092;Parent=gene2130;Dbxref=Genbank:WP_001214307.1;Name=WP_001214307.1;gbkey=CDS;product=cytochrome C;protein_id=WP_001214307.1;transl_table=11 NC_008258.1 RefSeq gene 1959129 1959875 . - . ID=gene2131;Name=SFV_RS10710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10710;old_locus_tag=SFV_1912 NC_008258.1 Protein Homology CDS 1959129 1959875 . - 0 ID=cds2093;Parent=gene2131;Dbxref=Genbank:WP_001185741.1;Name=WP_001185741.1;gbkey=CDS;product=copper homeostasis protein CutC;protein_id=WP_001185741.1;transl_table=11 NC_008258.1 RefSeq gene 1959889 1960455 . - . ID=gene2132;Name=SFV_RS10715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10715;old_locus_tag=SFV_1913 NC_008258.1 Protein Homology CDS 1959889 1960455 . - 0 ID=cds2094;Parent=gene2132;Dbxref=Genbank:WP_005048653.1;Name=WP_005048653.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048653.1;transl_table=11 NC_008258.1 RefSeq gene 1960671 1962404 . + . ID=gene2133;Name=SFV_RS10720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10720;old_locus_tag=SFV_1914 NC_008258.1 Protein Homology CDS 1960671 1962404 . + 0 ID=cds2095;Parent=gene2133;Dbxref=Genbank:WP_001025296.1;Name=WP_001025296.1;gbkey=CDS;product=arginine--tRNA ligase;protein_id=WP_001025296.1;transl_table=11 NC_008258.1 RefSeq gene 1962581 1963069 . + . ID=gene2134;Name=SFV_RS10725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10725;old_locus_tag=SFV_1915 NC_008258.1 Protein Homology CDS 1962581 1963069 . + 0 ID=cds2096;Parent=gene2134;Dbxref=Genbank:WP_005063152.1;Name=WP_005063152.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005063152.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1963246 1964539 . + . ID=id342;gbkey=repeat_region NC_008258.1 RefSeq region 1963247 1964538 . - . ID=id343;gbkey=mobile_element NC_008258.1 RefSeq gene 1963289 1963675 . - . ID=gene2135;Name=SFV_RS10730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10730;old_locus_tag=SFV_1916 NC_008258.1 Protein Homology CDS 1963289 1963675 . - 0 ID=cds2097;Parent=gene2135;Dbxref=Genbank:WP_000450389.1;Name=WP_000450389.1;gbkey=CDS;product=transposase;protein_id=WP_000450389.1;transl_table=11 NC_008258.1 RefSeq gene 1963805 1964158 . - . ID=gene2136;Name=SFV_RS10735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10735;old_locus_tag=SFV_1917 NC_008258.1 Protein Homology CDS 1963805 1964158 . - 0 ID=cds2098;Parent=gene2136;Dbxref=Genbank:WP_001128886.1;Name=WP_001128886.1;gbkey=CDS;product=transposase;protein_id=WP_001128886.1;transl_table=11 NC_008258.1 RefSeq gene 1964158 1964484 . - . ID=gene2137;Name=SFV_RS10740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10740;old_locus_tag=SFV_1918 NC_008258.1 Protein Homology CDS 1964158 1964484 . - 0 ID=cds2099;Parent=gene2137;Dbxref=Genbank:WP_000165274.1;Name=WP_000165274.1;gbkey=CDS;product=transposase;protein_id=WP_000165274.1;transl_table=11 NC_008258.1 RefSeq gene 1964536 1964874 . - . ID=gene2138;Name=SFV_RS10745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10745;old_locus_tag=SFV_1919 NC_008258.1 Protein Homology CDS 1964536 1964874 . - 0 ID=cds2100;Parent=gene2138;Dbxref=Genbank:WP_001259572.1;Name=WP_001259572.1;gbkey=CDS;product=flagellar protein flhE;protein_id=WP_001259572.1;transl_table=11 NC_008258.1 RefSeq gene 1964874 1966858 . - . ID=gene2139;Name=SFV_RS10750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10750;pseudo=true NC_008258.1 Protein Homology CDS 1964874 1966858 . - 0 ID=cds2101;Parent=gene2139;exception=annotated by transcript or proteomic data;gbkey=CDS;product=flagellar biosynthesis protein FlhA;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1966898 1968091 . - . ID=gene2140;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=SFV_RS10755;old_locus_tag=SFV_1921 NC_008258.1 Protein Homology CDS 1966898 1968091 . - 0 ID=cds2102;Parent=gene2140;Dbxref=Genbank:WP_005105527.1;Name=WP_005105527.1;Note=membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export;gbkey=CDS;gene=flhB;product=flagellar biosynthesis protein FlhB;protein_id=WP_005105527.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1968710 1969962 . + . ID=id344;gbkey=repeat_region NC_008258.1 RefSeq region 1968712 1969961 . - . ID=id345;gbkey=mobile_element NC_008258.1 RefSeq gene 1968720 1969398 . - . ID=gene2141;Name=SFV_RS10760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10760;old_locus_tag=SFV_1922;pseudo=true NC_008258.1 Protein Homology CDS 1968720 1969398 . - 0 ID=cds2103;Parent=gene2141;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1969587 1969925 . - . ID=gene2142;Name=SFV_RS10765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10765;old_locus_tag=SFV_1923 NC_008258.1 Protein Homology CDS 1969587 1969925 . - 0 ID=cds2104;Parent=gene2142;Dbxref=Genbank:WP_005105528.1;Name=WP_005105528.1;gbkey=CDS;product=transposase;protein_id=WP_005105528.1;transl_table=11 NC_008258.1 RefSeq gene 1970030 1970425 . + . ID=gene2143;Name=SFV_RS10770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10770;old_locus_tag=SFV_1924 NC_008258.1 Protein Homology CDS 1970030 1970425 . + 0 ID=cds2105;Parent=gene2143;Dbxref=Genbank:WP_001103660.1;Name=WP_001103660.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001103660.1;transl_table=11 NC_008258.1 RefSeq repeat_region 1970409 1971679 . + . ID=id346;gbkey=repeat_region NC_008258.1 RefSeq region 1970413 1971676 . + . ID=id347;gbkey=mobile_element NC_008258.1 RefSeq gene 1970654 1970779 . + . ID=gene2144;Name=SFV_RS10775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10775;old_locus_tag=SFV_1925 NC_008258.1 Protein Homology CDS 1970654 1970779 . + 0 ID=cds2106;Parent=gene2144;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 1970920 1971633 . + . ID=gene2145;Name=SFV_RS10780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10780;old_locus_tag=SFV_1926 NC_008258.1 Protein Homology CDS 1970920 1971633 . + 0 ID=cds2107;Parent=gene2145;Dbxref=Genbank:WP_000940425.1;Name=WP_000940425.1;gbkey=CDS;product=transposase;protein_id=WP_000940425.1;transl_table=11 NC_008258.1 RefSeq gene 1971645 1972049 . + . ID=gene2146;Name=SFV_RS10785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10785 NC_008258.1 Protein Homology CDS 1971645 1972049 . + 0 ID=cds2108;Parent=gene2146;Dbxref=Genbank:WP_011069416.1;Name=WP_011069416.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069416.1;transl_table=11 NC_008258.1 RefSeq gene 1972137 1972781 . - . ID=gene2147;Name=SFV_RS10790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10790;old_locus_tag=SFV_1927 NC_008258.1 Protein Homology CDS 1972137 1972781 . - 0 ID=cds2109;Parent=gene2147;Dbxref=Genbank:WP_000983609.1;Name=WP_000983609.1;Note=cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation;gbkey=CDS;product=protein phosphatase CheZ;protein_id=WP_000983609.1;transl_table=11 NC_008258.1 RefSeq gene 1972792 1973181 . - . ID=gene2148;Name=SFV_RS10795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10795;old_locus_tag=SFV_1928 NC_008258.1 Protein Homology CDS 1972792 1973181 . - 0 ID=cds2110;Parent=gene2148;Dbxref=Genbank:WP_000763867.1;Name=WP_000763867.1;Note=chemotaxis regulator that%2C when phosphorylated%2C interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble;gbkey=CDS;product=chemotaxis protein CheY;protein_id=WP_000763867.1;transl_table=11 NC_008258.1 RefSeq gene 1973196 1974245 . - . ID=gene2149;Name=SFV_RS10800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10800;old_locus_tag=SFV_1929 NC_008258.1 Protein Homology CDS 1973196 1974245 . - 0 ID=cds2111;Parent=gene2149;Dbxref=Genbank:WP_000036372.1;Name=WP_000036372.1;Note=regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins;gbkey=CDS;product=two-component system protein-glutamate methylesterase response regulator;protein_id=WP_000036372.1;transl_table=11 NC_008258.1 RefSeq gene 1974248 1975108 . - . ID=gene2150;Name=SFV_RS10805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10805;old_locus_tag=SFV_1930 NC_008258.1 Protein Homology CDS 1974248 1975108 . - 0 ID=cds2112;Parent=gene2150;Dbxref=Genbank:WP_000204332.1;Name=WP_000204332.1;Note=methylates the MCP;gbkey=CDS;product=chemotaxis protein CheR;protein_id=WP_000204332.1;transl_table=11 NC_008258.1 RefSeq gene 1975127 1976728 . - . ID=gene2151;Name=SFV_RS10810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10810;old_locus_tag=SFV_1931 NC_008258.1 Protein Homology CDS 1975127 1976728 . - 0 ID=cds2113;Parent=gene2151;Dbxref=Genbank:WP_000483182.1;Name=WP_000483182.1;Note=mediates taxis toward dipeptides;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_000483182.1;transl_table=11 NC_008258.1 RefSeq gene 1976774 1978435 . - . ID=gene2152;Name=SFV_RS10815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10815;old_locus_tag=SFV_1932 NC_008258.1 Protein Homology CDS 1976774 1978435 . - 0 ID=cds2114;Parent=gene2152;Dbxref=Genbank:WP_005105530.1;Name=WP_005105530.1;Note=serine sensor receptor;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_005105530.1;transl_table=11 NC_008258.1 RefSeq gene 1978580 1979083 . - . ID=gene2153;Name=SFV_RS10820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10820;old_locus_tag=SFV_1933 NC_008258.1 Protein Homology CDS 1978580 1979083 . - 0 ID=cds2115;Parent=gene2153;Dbxref=Genbank:WP_000147302.1;Name=WP_000147302.1;gbkey=CDS;product=chemotaxis protein CheW;protein_id=WP_000147302.1;transl_table=11 NC_008258.1 RefSeq gene 1979104 1981062 . - . ID=gene2154;Name=SFV_RS10825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10825;old_locus_tag=SFV_1934 NC_008258.1 Protein Homology CDS 1979104 1981062 . - 0 ID=cds2116;Parent=gene2154;Dbxref=Genbank:WP_024259259.1;Name=WP_024259259.1;gbkey=CDS;product=chemotaxis protein CheA;protein_id=WP_024259259.1;transl_table=11 NC_008258.1 RefSeq gene 1981073 1981999 . - . ID=gene2155;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=SFV_RS10830;old_locus_tag=SFV_1935 NC_008258.1 Protein Homology CDS 1981073 1981999 . - 0 ID=cds2117;Parent=gene2155;Dbxref=Genbank:WP_000795618.1;Name=WP_000795618.1;Note=with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;gene=motB;product=flagellar motor protein MotB;protein_id=WP_000795618.1;transl_table=11 NC_008258.1 RefSeq gene 1981996 1982883 . - . ID=gene2156;Name=SFV_RS10835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10835;old_locus_tag=SFV_1936 NC_008258.1 Protein Homology CDS 1981996 1982883 . - 0 ID=cds2118;Parent=gene2156;Dbxref=Genbank:WP_000906331.1;Name=WP_000906331.1;Note=With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine;gbkey=CDS;product=flagellar motor protein MotA;protein_id=WP_000906331.1;transl_table=11 NC_008258.1 RefSeq gene 1983010 1983588 . - . ID=gene2157;Name=SFV_RS10840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10840;old_locus_tag=SFV_1937 NC_008258.1 Protein Homology CDS 1983010 1983588 . - 0 ID=cds2119;Parent=gene2157;Dbxref=Genbank:WP_001291603.1;Name=WP_001291603.1;Note=With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems;gbkey=CDS;product=flagellar transcriptional regulator FlhC;protein_id=WP_001291603.1;transl_table=11 NC_008258.1 RefSeq gene 1983591 1983818 . - . ID=gene2158;Name=SFV_RS10845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10845 NC_008258.1 Protein Homology CDS 1983591 1983818 . - 0 ID=cds2120;Parent=gene2158;Dbxref=Genbank:WP_001345517.1;Name=WP_001345517.1;gbkey=CDS;product=flagellar transcriptional regulator FlhD;protein_id=WP_001345517.1;transl_table=11 NC_008258.1 RefSeq gene 1984724 1985152 . + . ID=gene2159;Name=SFV_RS10850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10850;old_locus_tag=SFV_1939 NC_008258.1 Protein Homology CDS 1984724 1985152 . + 0 ID=cds2121;Parent=gene2159;Dbxref=Genbank:WP_000122430.1;Name=WP_000122430.1;Note=ppGpp-dependent%3B membrane-associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress;gbkey=CDS;product=universal stress protein C;protein_id=WP_000122430.1;transl_table=11 NC_008258.1 RefSeq gene 1985159 1986573 . - . ID=gene2160;Name=SFV_RS10855;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS10855;pseudo=true NC_008258.1 Protein Homology CDS 1985159 1986573 . - 0 ID=cds2122;Parent=gene2160;exception=annotated by transcript or proteomic data;gbkey=CDS;product=trehalose-6-phosphate synthase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1986548 1987348 . - . ID=gene2161;Name=SFV_RS10860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10860;old_locus_tag=SFV_1941 NC_008258.1 Protein Homology CDS 1986548 1987348 . - 0 ID=cds2123;Parent=gene2161;Dbxref=Genbank:WP_005048706.1;Name=WP_005048706.1;Note=biosynthetic%3B catalyzes the formation of trehalose and phosphate from trehalose-6-phosphate%3B expression is increased under osmotic stress and induced during the transition to stationary phase and by decreased temperature;gbkey=CDS;product=trehalose-6-phosphate phosphatase;protein_id=WP_005048706.1;transl_table=11 NC_008258.1 RefSeq gene 1987515 1988501 . - . ID=gene2162;Name=araH;gbkey=Gene;gene=araH;gene_biotype=protein_coding;locus_tag=SFV_RS10865;old_locus_tag=SFV_1942 NC_008258.1 Protein Homology CDS 1987515 1988501 . - 0 ID=cds2124;Parent=gene2162;Dbxref=Genbank:WP_000100205.1;Name=WP_000100205.1;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose;gbkey=CDS;gene=araH;product=arabinose ABC transporter permease;protein_id=WP_000100205.1;transl_table=11 NC_008258.1 RefSeq gene 1988516 1990025 . - . ID=gene2163;Name=araG;gbkey=Gene;gene=araG;gene_biotype=pseudogene;locus_tag=SFV_RS10870;pseudo=true NC_008258.1 Protein Homology CDS 1988516 1990025 . - 0 ID=cds2125;Parent=gene2163;Note=Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=araG;product=L-arabinose transporter ATP-binding protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 1990095 1991084 . - . ID=gene2164;Name=SFV_RS10875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10875;old_locus_tag=SFV_1944 NC_008258.1 Protein Homology CDS 1990095 1991084 . - 0 ID=cds2126;Parent=gene2164;Dbxref=Genbank:WP_000548676.1;Name=WP_000548676.1;Note=with AraGH is involved in the transport of arabinose into the cell;gbkey=CDS;product=arabinose ABC transporter substrate-binding protein;protein_id=WP_000548676.1;transl_table=11 NC_008258.1 RefSeq gene 1991881 1992384 . + . ID=gene2165;Name=SFV_RS10880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10880;old_locus_tag=SFV_1945 NC_008258.1 Protein Homology CDS 1991881 1992384 . + 0 ID=cds2127;Parent=gene2165;Dbxref=Genbank:WP_000179469.1;Name=WP_000179469.1;Note=ferritin B%3B required for virulence in Salmonella%3B may be involved in repair of damaged Fe-S clusters;gbkey=CDS;product=non-heme ferritin;protein_id=WP_000179469.1;transl_table=11 NC_008258.1 RefSeq gene 1992464 1992715 . - . ID=gene2166;Name=SFV_RS10885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10885;old_locus_tag=SFV_1947 NC_008258.1 Protein Homology CDS 1992464 1992715 . - 0 ID=cds2128;Parent=gene2166;Dbxref=Genbank:WP_000082120.1;Name=WP_000082120.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000082120.1;transl_table=11 NC_008258.1 RefSeq gene 1992827 1992973 . + . ID=gene2167;Name=SFV_RS10890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10890 NC_008258.1 Protein Homology CDS 1992827 1992973 . + 0 ID=cds2129;Parent=gene2167;Dbxref=Genbank:WP_001297814.1;Name=WP_001297814.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297814.1;transl_table=11 NC_008258.1 RefSeq gene 1993179 1993502 . + . ID=gene2168;Name=SFV_RS10895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10895;old_locus_tag=SFV_1948 NC_008258.1 Protein Homology CDS 1993179 1993502 . + 0 ID=cds2130;Parent=gene2168;Dbxref=Genbank:WP_001237866.1;Name=WP_001237866.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001237866.1;transl_table=11 NC_008258.1 RefSeq gene 1993673 1994170 . + . ID=gene2169;Name=SFV_RS10900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10900;old_locus_tag=SFV_1949 NC_008258.1 Protein Homology CDS 1993673 1994170 . + 0 ID=cds2131;Parent=gene2169;Dbxref=Genbank:WP_000917208.1;Name=WP_000917208.1;Note=cytoplasmic iron storage protein;gbkey=CDS;product=non-heme ferritin;protein_id=WP_000917208.1;transl_table=11 NC_008258.1 RefSeq gene 1994207 1994446 . - . ID=gene2170;Name=SFV_RS10905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10905;old_locus_tag=SFV_1950 NC_008258.1 Protein Homology CDS 1994207 1994446 . - 0 ID=cds2132;Parent=gene2170;Dbxref=Genbank:WP_000377229.1;Name=WP_000377229.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000377229.1;transl_table=11 NC_008258.1 RefSeq gene 1994636 1995847 . + . ID=gene2171;Name=SFV_RS10910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10910;old_locus_tag=SFV_1951 NC_008258.1 Protein Homology CDS 1994636 1995847 . + 0 ID=cds2133;Parent=gene2171;Dbxref=Genbank:WP_000797560.1;Name=WP_000797560.1;Note=tyrosine specific permease;gbkey=CDS;product=tyrosine-specific transporter;protein_id=WP_000797560.1;transl_table=11 NC_008258.1 RefSeq gene 1995909 1996574 . - . ID=gene2172;Name=SFV_RS10915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10915;old_locus_tag=SFV_1952 NC_008258.1 Protein Homology CDS 1995909 1996574 . - 0 ID=cds2134;Parent=gene2172;Dbxref=Genbank:WP_000847902.1;Name=WP_000847902.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000847902.1;transl_table=11 NC_008258.1 RefSeq gene 1996770 1996856 . - . ID=gene2173;Name=SFV_RS10920;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10920;old_locus_tag=SFV_1953 NC_008258.1 tRNAscan-SE tRNA 1996770 1996856 . - . ID=rna38;Parent=gene2173;anticodon=(pos:complement(1996820..1996822));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 1996770 1996856 . - . ID=id348;Parent=rna38;anticodon=(pos:complement(1996820..1996822));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 1996869 1996942 . - . ID=gene2174;Name=SFV_RS10925;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10925;old_locus_tag=SFV_1954 NC_008258.1 tRNAscan-SE tRNA 1996869 1996942 . - . ID=rna39;Parent=gene2174;anticodon=(pos:complement(1996908..1996910));gbkey=tRNA;product=tRNA-Cys NC_008258.1 tRNAscan-SE exon 1996869 1996942 . - . ID=id349;Parent=rna39;anticodon=(pos:complement(1996908..1996910));gbkey=tRNA;product=tRNA-Cys NC_008258.1 RefSeq gene 1996997 1997072 . - . ID=gene2175;Name=SFV_RS10930;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS10930;old_locus_tag=SFV_1955 NC_008258.1 tRNAscan-SE tRNA 1996997 1997072 . - . ID=rna40;Parent=gene2175;anticodon=(pos:complement(1997037..1997039));gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 1996997 1997072 . - . ID=id350;Parent=rna40;anticodon=(pos:complement(1997037..1997039));gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 1997224 1997772 . - . ID=gene2176;Name=SFV_RS10935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10935;old_locus_tag=SFV_1956 NC_008258.1 Protein Homology CDS 1997224 1997772 . - 0 ID=cds2135;Parent=gene2176;Dbxref=Genbank:WP_001160190.1;Name=WP_001160190.1;gbkey=CDS;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=WP_001160190.1;transl_table=11 NC_008258.1 RefSeq gene 1997829 1999661 . - . ID=gene2177;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=SFV_RS10940;old_locus_tag=SFV_1957 NC_008258.1 Protein Homology CDS 1997829 1999661 . - 0 ID=cds2136;Parent=gene2177;Dbxref=Genbank:WP_001283406.1;Name=WP_001283406.1;Note=The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision;gbkey=CDS;gene=uvrC;product=excinuclease ABC subunit C;protein_id=WP_001283406.1;transl_table=11 NC_008258.1 RefSeq gene 1999658 2000314 . - . ID=gene2178;Name=sirA;gbkey=Gene;gene=sirA;gene_biotype=protein_coding;gene_synonym=uvrY;locus_tag=SFV_RS10945;old_locus_tag=SFV_1958 NC_008258.1 Protein Homology CDS 1999658 2000314 . - 0 ID=cds2137;Parent=gene2178;Dbxref=Genbank:WP_000611335.1;Name=WP_000611335.1;Note=in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system%3B in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system;gbkey=CDS;gene=sirA;product=transcriptional regulator;protein_id=WP_000611335.1;transl_table=11 NC_008258.1 RefSeq gene 2000610 2000786 . + . ID=gene2179;Name=SFV_RS10950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10950 NC_008258.1 Protein Homology CDS 2000610 2000786 . + 0 ID=cds2138;Parent=gene2179;Dbxref=Genbank:WP_000590347.1;Name=WP_000590347.1;gbkey=CDS;product=2-oxo acid dehydrogenase;protein_id=WP_000590347.1;transl_table=11 NC_008258.1 RefSeq gene 2000773 2000997 . + . ID=gene2180;Name=SFV_RS10955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10955;old_locus_tag=SFV_1959 NC_008258.1 Protein Homology CDS 2000773 2000997 . + 0 ID=cds2139;Parent=gene2180;Dbxref=Genbank:WP_000106474.1;Name=WP_000106474.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000106474.1;transl_table=11 NC_008258.1 RefSeq gene 2001024 2001650 . - . ID=gene2181;Name=SFV_RS10960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10960;old_locus_tag=SFV_1960 NC_008258.1 Protein Homology CDS 2001024 2001650 . - 0 ID=cds2140;Parent=gene2181;Dbxref=Genbank:WP_001154259.1;Name=WP_001154259.1;Note=regulates genes involved in cell division;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001154259.1;transl_table=11 NC_008258.1 RefSeq gene 2001880 2002632 . - . ID=gene2182;Name=SFV_RS10965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10965;old_locus_tag=SFV_1961 NC_008258.1 Protein Homology CDS 2001880 2002632 . - 0 ID=cds2141;Parent=gene2182;Dbxref=Genbank:WP_001272995.1;Name=WP_001272995.1;gbkey=CDS;product=amino acid ABC transporter ATP-binding protein;protein_id=WP_001272995.1;transl_table=11 NC_008258.1 RefSeq gene 2002629 2003297 . - . ID=gene2183;Name=SFV_RS10970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10970;old_locus_tag=SFV_1962 NC_008258.1 Protein Homology CDS 2002629 2003297 . - 0 ID=cds2142;Parent=gene2183;Dbxref=Genbank:WP_001158220.1;Name=WP_001158220.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_001158220.1;transl_table=11 NC_008258.1 RefSeq gene 2003312 2004298 . - . ID=gene2184;Name=SFV_RS10975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10975;old_locus_tag=SFV_1963 NC_008258.1 Protein Homology CDS 2003312 2004298 . - 0 ID=cds2143;Parent=gene2184;Dbxref=Genbank:WP_001128248.1;Name=WP_001128248.1;Note=catalyzes the formation of pyruvate from D-cysteine;gbkey=CDS;product=D-cysteine desulfhydrase;protein_id=WP_001128248.1;transl_table=11 NC_008258.1 RefSeq gene 2004403 2005203 . - . ID=gene2185;Name=SFV_RS10980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10980;old_locus_tag=SFV_1964 NC_008258.1 Protein Homology CDS 2004403 2005203 . - 0 ID=cds2144;Parent=gene2185;Dbxref=Genbank:WP_001295643.1;Name=WP_001295643.1;gbkey=CDS;product=cystine transporter subunit;protein_id=WP_001295643.1;transl_table=11 NC_008258.1 RefSeq gene 2005291 2005842 . - . ID=gene2186;Name=SFV_RS10985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10985;old_locus_tag=SFV_1965 NC_008258.1 Protein Homology CDS 2005291 2005842 . - 0 ID=cds2145;Parent=gene2186;Dbxref=Genbank:WP_005048734.1;Name=WP_005048734.1;Note=expression activator of the class 2 type of flagellar operons%2C essential to achieve maximal cell motility%3B activator of type 1 fimbrial gene expression%3B cell density-responsive regulator%3B FliZ in Salmonella typhimurium induces HilA%2C an activator of invasion genes necessary to achieve full virulence;gbkey=CDS;product=flagellar biosynthesis protein FliZ;protein_id=WP_005048734.1;transl_table=11 NC_008258.1 RefSeq gene 2005888 2006607 . - . ID=gene2187;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=SFV_RS10990;old_locus_tag=SFV_1966 NC_008258.1 Protein Homology CDS 2005888 2006607 . - 0 ID=cds2146;Parent=gene2187;Dbxref=Genbank:WP_001087467.1;Name=WP_001087467.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor directs late flagellar biosynthesis genes;gbkey=CDS;gene=fliA;product=RNA polymerase sigma factor FliA;protein_id=WP_001087467.1;transl_table=11 NC_008258.1 RefSeq gene 2006772 2008424 . - . ID=gene2188;Name=SFV_RS10995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS10995;old_locus_tag=SFV_1967 NC_008258.1 Protein Homology CDS 2006772 2008424 . - 0 ID=cds2147;Parent=gene2188;Dbxref=Genbank:WP_000079690.1;Name=WP_000079690.1;gbkey=CDS;product=flagellin;protein_id=WP_000079690.1;transl_table=11 NC_008258.1 RefSeq gene 2008690 2010096 . + . ID=gene2189;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=SFV_RS11000;old_locus_tag=SFV_1968 NC_008258.1 Protein Homology CDS 2008690 2010096 . + 0 ID=cds2148;Parent=gene2189;Dbxref=Genbank:WP_000146789.1;Name=WP_000146789.1;Note=involved in flagellin assembly;gbkey=CDS;gene=fliD;product=flagellar capping protein;protein_id=WP_000146789.1;transl_table=11 NC_008258.1 RefSeq gene 2010121 2010531 . + . ID=gene2190;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=SFV_RS11005;old_locus_tag=SFV_1969 NC_008258.1 Protein Homology CDS 2010121 2010531 . + 0 ID=cds2149;Parent=gene2190;Dbxref=Genbank:WP_000270672.1;Name=WP_000270672.1;Note=flagellin specific chaperone;gbkey=CDS;gene=fliS;product=flagellar export chaperone FliS;protein_id=WP_000270672.1;transl_table=11 NC_008258.1 RefSeq gene 2010531 2010896 . + . ID=gene2191;Name=SFV_RS11010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11010;old_locus_tag=SFV_1970 NC_008258.1 Protein Homology CDS 2010531 2010896 . + 0 ID=cds2150;Parent=gene2191;Dbxref=Genbank:WP_001057836.1;Name=WP_001057836.1;Note=binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway%3B acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription%3B member of the type III cytoplasmic chaperone family;gbkey=CDS;product=flagellar protein FliT;protein_id=WP_001057836.1;transl_table=11 NC_008258.1 RefSeq gene 2010974 2012461 . + . ID=gene2192;Name=SFV_RS11015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11015;old_locus_tag=SFV_1971 NC_008258.1 Protein Homology CDS 2010974 2012461 . + 0 ID=cds2151;Parent=gene2192;Dbxref=Genbank:WP_001245691.1;Name=WP_001245691.1;Note=converts 1%2C4-alpha-D-glucans to maltodextrin;gbkey=CDS;product=alpha-amylase;protein_id=WP_001245691.1;transl_table=11 NC_008258.1 RefSeq gene 2012495 2012908 . - . ID=gene2193;Name=SFV_RS11020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11020;old_locus_tag=SFV_1972 NC_008258.1 Protein Homology CDS 2012495 2012908 . - 0 ID=cds2152;Parent=gene2193;Dbxref=Genbank:WP_001392280.1;Name=WP_001392280.1;gbkey=CDS;product=lipoprotein;protein_id=WP_001392280.1;transl_table=11 NC_008258.1 RefSeq gene 2013095 2014300 . + . ID=gene2194;Name=SFV_RS11025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11025;old_locus_tag=SFV_1973 NC_008258.1 Protein Homology CDS 2013095 2014300 . + 0 ID=cds2153;Parent=gene2194;Dbxref=Genbank:WP_000118898.1;Name=WP_000118898.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000118898.1;transl_table=11 NC_008258.1 RefSeq gene 2014297 2014530 . + . ID=gene2195;Name=SFV_RS11030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11030;old_locus_tag=SFV_1974 NC_008258.1 Protein Homology CDS 2014297 2014530 . + 0 ID=cds2154;Parent=gene2195;Dbxref=Genbank:WP_000790504.1;Name=WP_000790504.1;gbkey=CDS;product=TusA family sulfurtransferase;protein_id=WP_000790504.1;transl_table=11 NC_008258.1 RefSeq gene 2014637 2015307 . + . ID=gene2196;Name=SFV_RS11035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11035;pseudo=true NC_008258.1 Protein Homology CDS 2014637 2015307 . + 0 ID=cds2155;Parent=gene2196;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2015303 2017033 . + . ID=id351;gbkey=repeat_region NC_008258.1 RefSeq gene 2015347 2016153 . - . ID=gene2197;Name=SFV_RS11040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11040;old_locus_tag=SFV_1976 NC_008258.1 Protein Homology CDS 2015347 2016153 . - 0 ID=cds2156;Parent=gene2197;Dbxref=Genbank:WP_001270613.1;Name=WP_001270613.1;gbkey=CDS;product=virulence factor;protein_id=WP_001270613.1;transl_table=11 NC_008258.1 RefSeq gene 2016250 2016381 . - . ID=gene2198;Name=SFV_RS11045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11045 NC_008258.1 Protein Homology CDS 2016250 2016381 . - 0 ID=cds2157;Parent=gene2198;Dbxref=Genbank:WP_000230645.1;Name=WP_000230645.1;gbkey=CDS;product=transposase;protein_id=WP_000230645.1;transl_table=11 NC_008258.1 RefSeq gene 2016382 2016495 . - . ID=gene2199;Name=SFV_RS11050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11050 NC_008258.1 Protein Homology CDS 2016382 2016495 . - 0 ID=cds2158;Parent=gene2199;Dbxref=Genbank:WP_001251076.1;Name=WP_001251076.1;gbkey=CDS;product=transposase;protein_id=WP_001251076.1;transl_table=11 NC_008258.1 RefSeq gene 2016623 2016847 . + . ID=gene2200;Name=SFV_RS11055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11055 NC_008258.1 Protein Homology CDS 2016623 2016847 . + 0 ID=cds2159;Parent=gene2200;Dbxref=Genbank:WP_005069146.1;Name=WP_005069146.1;gbkey=CDS;product=transposase;protein_id=WP_005069146.1;transl_table=11 NC_008258.1 RefSeq gene 2017566 2018648 . + . ID=gene2201;Name=SFV_RS11060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11060;old_locus_tag=SFV_1977 NC_008258.1 Protein Homology CDS 2017566 2018648 . + 0 ID=cds2160;Parent=gene2201;Dbxref=Genbank:WP_000737291.1;Name=WP_000737291.1;gbkey=CDS;product=porin;protein_id=WP_000737291.1;transl_table=11 NC_008258.1 RefSeq gene 2019137 2019934 . - . ID=gene2202;Name=SFV_RS11065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11065;old_locus_tag=SFV_1978 NC_008258.1 Protein Homology CDS 2019137 2019934 . - 0 ID=cds2161;Parent=gene2202;Dbxref=Genbank:WP_000881067.1;Name=WP_000881067.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000881067.1;transl_table=11 NC_008258.1 RefSeq gene 2019944 2020495 . - . ID=gene2203;Name=SFV_RS11070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11070 NC_008258.1 Protein Homology CDS 2019944 2020495 . - 0 ID=cds2162;Parent=gene2203;Dbxref=Genbank:WP_001313946.1;Name=WP_001313946.1;gbkey=CDS;product=kinase inhibitor;protein_id=WP_001313946.1;transl_table=11 NC_008258.1 RefSeq gene 2020664 2020996 . - . ID=gene2204;Name=SFV_RS11075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11075 NC_008258.1 Protein Homology CDS 2020664 2020996 . - 0 ID=cds2163;Parent=gene2204;Dbxref=Genbank:WP_001070440.1;Name=WP_001070440.1;gbkey=CDS;product=multidrug SMR transporter;protein_id=WP_001070440.1;transl_table=11 NC_008258.1 RefSeq gene 2021096 2021421 . + . ID=gene2205;Name=SFV_RS11085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11085;pseudo=true NC_008258.1 Protein Homology CDS 2021096 2021421 . + 0 ID=cds2164;Parent=gene2205;exception=annotated by transcript or proteomic data;gbkey=CDS;product=integrase;pseudo=true;transl_except=(pos:2021153..2021155%2Caa:Other),(pos:2021321..2021323%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2021341 2021655 . - . ID=gene2206;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=SFV_RS11090;old_locus_tag=SFV_1980 NC_008258.1 Protein Homology CDS 2021341 2021655 . - 0 ID=cds2165;Parent=gene2206;Dbxref=Genbank:WP_001274301.1;Name=WP_001274301.1;Note=forms a junction between the M-ring and FlgB during flagella biosynthesis;gbkey=CDS;gene=fliE;product=flagellar hook-basal body complex protein FliE;protein_id=WP_001274301.1;transl_table=11 NC_008258.1 RefSeq gene 2021869 2023527 . + . ID=gene2207;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=pseudogene;locus_tag=SFV_RS11095;pseudo=true NC_008258.1 Protein Homology CDS 2021869 2023527 . + 0 ID=cds2166;Parent=gene2207;Note=the MS-ring anchors the flagellum to the cytoplasmic membrane%3B part of the flagellar basal body which consists of four rings L%2C P%2C S%2C and M mounted on a central rod;gbkey=CDS;gene=fliF;product=flagellar MS-ring protein;pseudo=true;transl_except=(pos:2022652..2022654%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2023520 2024515 . + . ID=gene2208;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=SFV_RS11100;old_locus_tag=SFV_1982 NC_008258.1 Protein Homology CDS 2023520 2024515 . + 0 ID=cds2167;Parent=gene2208;Dbxref=Genbank:WP_000067950.1;Name=WP_000067950.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliG;product=flagellar motor switch protein FliG;protein_id=WP_000067950.1;transl_table=11 NC_008258.1 RefSeq gene 2024508 2025194 . + . ID=gene2209;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=SFV_RS11105;old_locus_tag=SFV_1983 NC_008258.1 Protein Homology CDS 2024508 2025194 . + 0 ID=cds2168;Parent=gene2209;Dbxref=Genbank:WP_001282677.1;Name=WP_001282677.1;Note=binds to and inhibits the function of flagella specific ATPase FliI;gbkey=CDS;gene=fliH;product=flagellar assembly protein H;protein_id=WP_001282677.1;transl_table=11 NC_008258.1 RefSeq gene 2025194 2026567 . + . ID=gene2210;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=SFV_RS11110;old_locus_tag=SFV_1984 NC_008258.1 Protein Homology CDS 2025194 2026567 . + 0 ID=cds2169;Parent=gene2210;Dbxref=Genbank:WP_000213254.1;Name=WP_000213254.1;Note=involved in type III protein export during flagellum assembly;gbkey=CDS;gene=fliI;product=ATP synthase;protein_id=WP_000213254.1;transl_table=11 NC_008258.1 RefSeq gene 2026571 2026930 . + . ID=gene2211;Name=fliJ;gbkey=Gene;gene=fliJ;gene_biotype=pseudogene;locus_tag=SFV_RS11115;partial=true;pseudo=true;start_range=.,2026571 NC_008258.1 Protein Homology CDS 2026571 2026930 . + 0 ID=cds2170;Parent=gene2211;Note=rod/hook and filament chaperone;gbkey=CDS;gene=fliJ;partial=true;product=flagellar biosynthesis chaperone;pseudo=true;start_range=.,2026571;transl_except=(pos:2026577..2026579%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2026927 2028054 . + . ID=gene2212;Name=SFV_RS11120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11120;old_locus_tag=SFV_1986 NC_008258.1 Protein Homology CDS 2026927 2028054 . + 0 ID=cds2171;Parent=gene2212;Dbxref=Genbank:WP_000620124.1;Name=WP_000620124.1;gbkey=CDS;product=flagellar hook-length control protein FliK;protein_id=WP_000620124.1;transl_table=11 NC_008258.1 RefSeq gene 2028159 2028623 . + . ID=gene2213;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=SFV_RS11125;old_locus_tag=SFV_1987 NC_008258.1 Protein Homology CDS 2028159 2028623 . + 0 ID=cds2172;Parent=gene2213;Dbxref=Genbank:WP_000133106.1;Name=WP_000133106.1;Note=interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring;gbkey=CDS;gene=fliL;product=flagellar protein FliL;protein_id=WP_000133106.1;transl_table=11 NC_008258.1 RefSeq gene 2028628 2029632 . + . ID=gene2214;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=SFV_RS11130;old_locus_tag=SFV_1988 NC_008258.1 Protein Homology CDS 2028628 2029632 . + 0 ID=cds2173;Parent=gene2214;Dbxref=Genbank:WP_024260282.1;Name=WP_024260282.1;Note=with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation;gbkey=CDS;gene=fliM;product=flagellar motor switch protein FliM;protein_id=WP_024260282.1;transl_table=11 NC_008258.1 RefSeq gene 2029629 2030042 . + . ID=gene2215;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=SFV_RS11135;old_locus_tag=SFV_1989 NC_008258.1 Protein Homology CDS 2029629 2030042 . + 0 ID=cds2174;Parent=gene2215;Dbxref=Genbank:WP_001282086.1;Name=WP_001282086.1;Note=One of three proteins involved in switching the direction of the flagellar rotation;gbkey=CDS;gene=fliN;product=flagellar motor switch protein FliN;protein_id=WP_001282086.1;transl_table=11 NC_008258.1 RefSeq gene 2030045 2030410 . + . ID=gene2216;Name=SFV_RS11140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11140;old_locus_tag=SFV_1990 NC_008258.1 Protein Homology CDS 2030045 2030410 . + 0 ID=cds2175;Parent=gene2216;Dbxref=Genbank:WP_001298519.1;Name=WP_001298519.1;Note=with FlhA%2C FlhB%2C FliP%2C FliQ and FliR is one of the membrane components of the flagellar export apparatus;gbkey=CDS;product=flagellar biosynthesis protein FliO;protein_id=WP_001298519.1;transl_table=11 NC_008258.1 RefSeq gene 2030410 2031147 . + . ID=gene2217;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=SFV_RS11145;old_locus_tag=SFV_1991 NC_008258.1 Protein Homology CDS 2030410 2031147 . + 0 ID=cds2176;Parent=gene2217;Dbxref=Genbank:WP_001253318.1;Name=WP_001253318.1;Note=FliP%2C with proteins FliQ and FliR%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliP;product=flagellar biosynthesis protein FliP;protein_id=WP_001253318.1;transl_table=11 NC_008258.1 RefSeq gene 2031157 2031426 . + . ID=gene2218;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=SFV_RS11150;old_locus_tag=SFV_1992 NC_008258.1 Protein Homology CDS 2031157 2031426 . + 0 ID=cds2177;Parent=gene2218;Dbxref=Genbank:WP_000187358.1;Name=WP_000187358.1;Note=with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliQ;product=flagellar biosynthetic protein FliQ;protein_id=WP_000187358.1;transl_table=11 NC_008258.1 RefSeq gene 2031435 2032220 . + . ID=gene2219;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=SFV_RS11155;old_locus_tag=SFV_1993 NC_008258.1 Protein Homology CDS 2031435 2032220 . + 0 ID=cds2178;Parent=gene2219;Dbxref=Genbank:WP_000983188.1;Name=WP_000983188.1;Note=FliR%2C with proteins FliP and FliQ%2C forms the core of the central channel in the flagella export apparatus;gbkey=CDS;gene=fliR;product=flagellar biosynthesis protein FliR;protein_id=WP_000983188.1;transl_table=11 NC_008258.1 RefSeq gene 2032505 2033128 . + . ID=gene2220;Name=rcsA;gbkey=Gene;gene=rcsA;gene_biotype=protein_coding;locus_tag=SFV_RS11160;old_locus_tag=SFV_1994 NC_008258.1 Protein Homology CDS 2032505 2033128 . + 0 ID=cds2179;Parent=gene2220;Dbxref=Genbank:WP_000103994.1;Name=WP_000103994.1;Note=with RcsB is a positive regulator of capsular polysaccharide synthesis genes;gbkey=CDS;gene=rcsA;product=colanic acid capsular biosynthesis activation protein A;protein_id=WP_000103994.1;transl_table=11 NC_008258.1 RefSeq gene 2033172 2033360 . - . ID=gene2221;Name=SFV_RS11165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11165 NC_008258.1 Protein Homology CDS 2033172 2033360 . - 0 ID=cds2180;Parent=gene2221;Dbxref=Genbank:WP_000867216.1;Name=WP_000867216.1;gbkey=CDS;product=protein DsrB;protein_id=WP_000867216.1;transl_table=11 NC_008258.1 RefSeq gene 2033523 2033750 . + . ID=gene2222;Name=SFV_RS11170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11170;old_locus_tag=SFV_1996 NC_008258.1 Protein Homology CDS 2033523 2033750 . + 0 ID=cds2181;Parent=gene2222;Dbxref=Genbank:WP_005048789.1;Name=WP_005048789.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005048789.1;transl_table=11 NC_008258.1 RefSeq gene 2034048 2034455 . + . ID=gene2223;Name=SFV_RS11175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11175 NC_008258.1 Protein Homology CDS 2034048 2034455 . + 0 ID=cds2182;Parent=gene2223;Dbxref=Genbank:WP_000491478.1;Name=WP_000491478.1;gbkey=CDS;product=mannosyl-3-phosphoglycerate phosphatase;protein_id=WP_000491478.1;transl_table=11 NC_008258.1 RefSeq gene 2034519 2034863 . + . ID=gene2224;Name=SFV_RS11180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11180 NC_008258.1 Protein Homology CDS 2034519 2034863 . + 0 ID=cds2183;Parent=gene2224;Dbxref=Genbank:WP_000046685.1;Name=WP_000046685.1;gbkey=CDS;product=mannosyl-3-phosphoglycerate phosphatase;protein_id=WP_000046685.1;transl_table=11 NC_008258.1 RefSeq gene 2034860 2036377 . - . ID=gene2225;Name=SFV_RS11185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11185;old_locus_tag=SFV_1998 NC_008258.1 Protein Homology CDS 2034860 2036377 . - 0 ID=cds2184;Parent=gene2225;Dbxref=Genbank:WP_029717314.1;Name=WP_029717314.1;Note=catalyzes the formation of cyclic di-3'%2C5'-guanylate from guanosine triphosphate%3B involved in the regulation of cellulose biosynthesis;gbkey=CDS;product=diguanylate cyclase;protein_id=WP_029717314.1;transl_table=11 NC_008258.1 RefSeq gene 2036387 2036536 . - . ID=gene2226;Name=SFV_RS11190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11190 NC_008258.1 Protein Homology CDS 2036387 2036536 . - 0 ID=cds2185;Parent=gene2226;Dbxref=Genbank:WP_000431459.1;Name=WP_000431459.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000431459.1;transl_table=11 NC_008258.1 RefSeq gene 2036725 2036907 . - . ID=gene2227;Name=SFV_RS11195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11195 NC_008258.1 Protein Homology CDS 2036725 2036907 . - 0 ID=cds2186;Parent=gene2227;Dbxref=Genbank:WP_000009302.1;Name=WP_000009302.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000009302.1;transl_table=11 NC_008258.1 RefSeq gene 2036986 2037903 . - . ID=gene2228;Name=SFV_RS11200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11200;old_locus_tag=SFV_1999 NC_008258.1 Protein Homology CDS 2036986 2037903 . - 0 ID=cds2187;Parent=gene2228;Dbxref=Genbank:WP_000922688.1;Name=WP_000922688.1;gbkey=CDS;product=membrane protein;protein_id=WP_000922688.1;transl_table=11 NC_008258.1 RefSeq gene 2038076 2038996 . + . ID=gene2229;Name=SFV_RS11205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11205;old_locus_tag=SFV_2000 NC_008258.1 Protein Homology CDS 2038076 2038996 . + 0 ID=cds2188;Parent=gene2229;Dbxref=Genbank:WP_001212270.1;Name=WP_001212270.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_001212270.1;transl_table=11 NC_008258.1 RefSeq gene 2038985 2039455 . - . ID=gene2230;Name=SFV_RS11210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11210;old_locus_tag=SFV_2001 NC_008258.1 Protein Homology CDS 2038985 2039455 . - 0 ID=cds2189;Parent=gene2230;Dbxref=Genbank:WP_000228688.1;Name=WP_000228688.1;Note=DNA mismatch endonuclease%3B recognizes and repairs T:G mismatches;gbkey=CDS;product=very short patch repair endonuclease;protein_id=WP_000228688.1;transl_table=11 NC_008258.1 RefSeq gene 2039436 2040854 . - . ID=gene2231;Name=SFV_RS11215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11215;old_locus_tag=SFV_2002 NC_008258.1 Protein Homology CDS 2039436 2040854 . - 0 ID=cds2190;Parent=gene2231;Dbxref=Genbank:WP_001157215.1;Name=WP_001157215.1;gbkey=CDS;product=DNA-cytosine methyltransferase;protein_id=WP_001157215.1;transl_table=11 NC_008258.1 RefSeq gene 2040921 2041461 . - . ID=gene2232;Name=SFV_RS11220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11220;old_locus_tag=SFV_2003;pseudo=true NC_008258.1 Protein Homology CDS 2040921 2041461 . - 0 ID=cds2191;Parent=gene2232;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hydrolase;pseudo=true;transl_except=(pos:complement(2041435..2041437)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2041501 2041758 . - . ID=gene2233;Name=SFV_RS11225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11225 NC_008258.1 Protein Homology CDS 2041501 2041758 . - 0 ID=cds2192;Parent=gene2233;Dbxref=Genbank:WP_032155863.1;Name=WP_032155863.1;gbkey=CDS;product=permease;protein_id=WP_032155863.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2041738 2042971 . + . ID=id352;gbkey=repeat_region NC_008258.1 RefSeq gene 2041759 2042571 . - . ID=gene2234;Name=SFV_RS11230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11230;old_locus_tag=SFV_2004 NC_008258.1 Protein Homology CDS 2041759 2042571 . - 0 ID=cds2193;Parent=gene2234;Dbxref=Genbank:WP_000887808.1;Name=WP_000887808.1;gbkey=CDS;product=transposase;protein_id=WP_000887808.1;transl_table=11 NC_008258.1 RefSeq gene 2042628 2042906 . - . ID=gene2235;Name=SFV_RS11235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11235;old_locus_tag=SFV_2005 NC_008258.1 Protein Homology CDS 2042628 2042906 . - 0 ID=cds2194;Parent=gene2235;Dbxref=Genbank:WP_000015547.1;Name=WP_000015547.1;gbkey=CDS;product=transposase;protein_id=WP_000015547.1;transl_table=11 NC_008258.1 RefSeq gene 2042933 2043736 . + . ID=gene2236;Name=SFV_RS11240;end_range=2043736,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11240;old_locus_tag=SFV_2006;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2042933 2043736 . + 0 ID=cds2195;Parent=gene2236;end_range=2043736,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2043732 2045066 . + . ID=id353;gbkey=repeat_region NC_008258.1 RefSeq region 2043734 2045064 . - . ID=id354;gbkey=mobile_element NC_008258.1 RefSeq gene 2044303 2044605 . + . ID=gene2237;Name=SFV_RS11245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11245 NC_008258.1 Protein Homology CDS 2044303 2044605 . + 0 ID=cds2196;Parent=gene2237;Dbxref=Genbank:WP_000336274.1;Name=WP_000336274.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000336274.1;transl_table=11 NC_008258.1 RefSeq gene 2044608 2044973 . - . ID=gene2238;Name=SFV_RS11250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11250;old_locus_tag=SFV_2008 NC_008258.1 Protein Homology CDS 2044608 2044973 . - 0 ID=cds2197;Parent=gene2238;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 2045067 2045246 . + . ID=gene2239;Name=SFV_RS11255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11255;old_locus_tag=SFV_2009;partial=true;pseudo=true;start_range=.,2045067 NC_008258.1 Protein Homology CDS 2045067 2045246 . + 0 ID=cds2198;Parent=gene2239;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2045067;transl_table=11 NC_008258.1 RefSeq gene 2045360 2045577 . + . ID=gene2240;Name=SFV_RS11260;end_range=2045577,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11260;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2045360 2045577 . + 0 ID=cds2199;Parent=gene2240;end_range=2045577,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2045814 2046588 . + . ID=id355;gbkey=repeat_region NC_008258.1 RefSeq region 2045819 2046586 . + . ID=id356;gbkey=mobile_element NC_008258.1 RefSeq gene 2045925 2046149 . + . ID=gene2241;Name=SFV_RS11265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11265 NC_008258.1 Protein Homology CDS 2045925 2046149 . + 0 ID=cds2200;Parent=gene2241;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2046176 2046571 . + . ID=gene2242;Name=SFV_RS11270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11270 NC_008258.1 Protein Homology CDS 2046176 2046571 . + 0 ID=cds2201;Parent=gene2242;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 2046617 2047468 . + . ID=gene2243;Name=SFV_RS11275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11275;old_locus_tag=SFV_2012 NC_008258.1 Protein Homology CDS 2046617 2047468 . + 0 ID=cds2202;Parent=gene2243;Dbxref=Genbank:WP_000218218.1;Name=WP_000218218.1;Note=Hsp31 stabilizes early unfolding protein intermediates under severe heat stress;gbkey=CDS;product=Molecular chaperone Hsp31 and glyoxalase 3;protein_id=WP_000218218.1;transl_table=11 NC_008258.1 RefSeq gene 2047576 2048934 . - . ID=gene2244;Name=SFV_RS11280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11280;old_locus_tag=SFV_2013 NC_008258.1 Protein Homology CDS 2047576 2048934 . - 0 ID=cds2203;Parent=gene2244;Dbxref=Genbank:WP_000826717.1;Name=WP_000826717.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000826717.1;transl_table=11 NC_008258.1 RefSeq gene 2048934 2049605 . - . ID=gene2245;Name=SFV_RS11285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11285;old_locus_tag=SFV_2014 NC_008258.1 Protein Homology CDS 2048934 2049605 . - 0 ID=cds2204;Parent=gene2245;Dbxref=Genbank:WP_001347103.1;Name=WP_001347103.1;Note=induced by CusR in the presence of copper%3B YedW induces the expression of the upstream gene yedV (encoding a sensor kinase) as well as yedW%3B yedVW is one of four copper regulons found in E. coli%3B part of the copper homeostasis mechanism%3B confers resistance to copper and several drugs when induced;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001347103.1;transl_table=11 NC_008258.1 RefSeq gene 2049738 2050151 . + . ID=gene2246;Name=SFV_RS11290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11290;old_locus_tag=SFV_2015 NC_008258.1 Protein Homology CDS 2049738 2050151 . + 0 ID=cds2205;Parent=gene2246;Dbxref=Genbank:WP_000920127.1;Name=WP_000920127.1;Note=catalyzes the formation of 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline from 5-hydroxyisourate;gbkey=CDS;product=hydroxyisourate hydrolase;protein_id=WP_000920127.1;transl_table=11 NC_008258.1 RefSeq gene 2050260 2051264 . + . ID=gene2247;Name=SFV_RS11295;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11295;pseudo=true NC_008258.1 Protein Homology CDS 2050260 2051264 . + 0 ID=cds2206;Parent=gene2247;Note=in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase%3B requires inner membrane anchor protein YedZ;gbkey=CDS;product=TMAO reductase;pseudo=true;transl_except=(pos:2050473..2050475%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2051265 2051900 . + . ID=gene2248;Name=SFV_RS11300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11300;old_locus_tag=SFV_2017 NC_008258.1 Protein Homology CDS 2051265 2051900 . + 0 ID=cds2207;Parent=gene2248;Dbxref=Genbank:WP_001240060.1;Name=WP_001240060.1;Note=in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY%3B sulfite oxidase activity not demonstrated%3B contains heme;gbkey=CDS;product=sulfoxide reductase heme-binding subunit YedZ;protein_id=WP_001240060.1;transl_table=11 NC_008258.1 RefSeq gene 2052158 2052808 . + . ID=gene2249;Name=SFV_RS11305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11305;old_locus_tag=SFV_2018 NC_008258.1 Protein Homology CDS 2052158 2052808 . + 0 ID=cds2208;Parent=gene2249;Dbxref=Genbank:WP_001007781.1;Name=WP_001007781.1;gbkey=CDS;product=zinc/cadmium-binding protein;protein_id=WP_001007781.1;transl_table=11 NC_008258.1 RefSeq gene 2052844 2053173 . + . ID=gene2250;Name=SFV_RS11310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11310 NC_008258.1 Protein Homology CDS 2052844 2053173 . + 0 ID=cds2209;Parent=gene2250;Dbxref=Genbank:WP_032155819.1;Name=WP_032155819.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155819.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2053779 2060674 . + . ID=id357;gbkey=repeat_region NC_008258.1 RefSeq gene 2053886 2054155 . - . ID=gene2251;Name=SFV_RS11315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11315;old_locus_tag=SFV_2019 NC_008258.1 Protein Homology CDS 2053886 2054155 . - 0 ID=cds2210;Parent=gene2251;Dbxref=Genbank:WP_000937511.1;Name=WP_000937511.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937511.1;transl_table=11 NC_008258.1 RefSeq gene 2054224 2054880 . + . ID=gene2252;Name=SFV_RS11320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11320;old_locus_tag=SFV_2020 NC_008258.1 Protein Homology CDS 2054224 2054880 . + 0 ID=cds2211;Parent=gene2252;Dbxref=Genbank:WP_000742379.1;Name=WP_000742379.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000742379.1;transl_table=11 NC_008258.1 RefSeq gene 2055196 2056839 . + . ID=gene2253;Name=SFV_RS11325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11325;old_locus_tag=SFV_2021 NC_008258.1 Protein Homology CDS 2055196 2056839 . + 0 ID=cds2212;Parent=gene2253;Dbxref=Genbank:WP_011587238.1;Name=WP_011587238.1;gbkey=CDS;product=invasion plasmid antigen;protein_id=WP_011587238.1;transl_table=11 NC_008258.1 RefSeq gene 2056840 2057019 . - . ID=gene2254;Name=SFV_RS11330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11330 NC_008258.1 Protein Homology CDS 2056840 2057019 . - 0 ID=cds2213;Parent=gene2254;Dbxref=Genbank:WP_001039885.1;Name=WP_001039885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039885.1;transl_table=11 NC_008258.1 RefSeq gene 2057019 2057384 . - . ID=gene2255;Name=SFV_RS11335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11335;old_locus_tag=SFV_2022 NC_008258.1 Protein Homology CDS 2057019 2057384 . - 0 ID=cds2214;Parent=gene2255;Dbxref=Genbank:WP_000888287.1;Name=WP_000888287.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000888287.1;transl_table=11 NC_008258.1 RefSeq region 2057496 2058759 . - . ID=id358;gbkey=mobile_element NC_008258.1 RefSeq gene 2057539 2058252 . - . ID=gene2256;Name=SFV_RS11340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11340;old_locus_tag=SFV_2023 NC_008258.1 Protein Homology CDS 2057539 2058252 . - 0 ID=cds2215;Parent=gene2256;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 2058393 2058695 . - . ID=gene2257;Name=SFV_RS11345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11345;old_locus_tag=SFV_2024 NC_008258.1 Protein Homology CDS 2058393 2058695 . - 0 ID=cds2216;Parent=gene2257;Dbxref=Genbank:WP_005105550.1;Name=WP_005105550.1;gbkey=CDS;product=transposase;protein_id=WP_005105550.1;transl_table=11 NC_008258.1 RefSeq gene 2058752 2059120 . - . ID=gene2258;Name=SFV_RS11350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11350 NC_008258.1 Protein Homology CDS 2058752 2059120 . - 0 ID=cds2217;Parent=gene2258;Dbxref=Genbank:WP_000504823.1;Name=WP_000504823.1;gbkey=CDS;product=transposase;protein_id=WP_000504823.1;transl_table=11 NC_008258.1 RefSeq region 2058760 2060673 . + . ID=id359;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2059298 2059573 . - . ID=gene2259;Name=SFV_RS11355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11355;old_locus_tag=SFV_2026 NC_008258.1 Protein Homology CDS 2059298 2059573 . - 0 ID=cds2218;Parent=gene2259;Dbxref=Genbank:WP_005105552.1;Name=WP_005105552.1;gbkey=CDS;product=isocitrate lyase;protein_id=WP_005105552.1;transl_table=11 NC_008258.1 RefSeq gene 2059570 2059920 . - . ID=gene2260;Name=SFV_RS11360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11360;old_locus_tag=SFV_2027 NC_008258.1 Protein Homology CDS 2059570 2059920 . - 0 ID=cds2219;Parent=gene2260;Dbxref=Genbank:WP_005049241.1;Name=WP_005049241.1;gbkey=CDS;product=isocitrate lyase;protein_id=WP_005049241.1;transl_table=11 NC_008258.1 RefSeq gene 2059917 2060591 . - . ID=gene2261;Name=SFV_RS11365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11365;old_locus_tag=SFV_2028 NC_008258.1 Protein Homology CDS 2059917 2060591 . - 0 ID=cds2220;Parent=gene2261;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq gene 2060690 2060905 . - . ID=gene2262;Name=SFV_RS11370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11370;old_locus_tag=SFV_2029 NC_008258.1 Protein Homology CDS 2060690 2060905 . - 0 ID=cds2221;Parent=gene2262;Dbxref=Genbank:WP_000839572.1;Name=WP_000839572.1;gbkey=CDS;product=holin;protein_id=WP_000839572.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2060703 2061487 . + . ID=id360;gbkey=repeat_region NC_008258.1 RefSeq gene 2061198 2061272 . - . ID=gene2263;Name=SFV_RS11375;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11375;old_locus_tag=SFV_2030 NC_008258.1 tRNAscan-SE tRNA 2061198 2061272 . - . ID=rna41;Parent=gene2263;anticodon=(pos:complement(2061237..2061239));gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 2061198 2061272 . - . ID=id361;Parent=rna41;anticodon=(pos:complement(2061237..2061239));gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 2061276 2061351 . - . ID=gene2264;Name=SFV_RS11380;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11380;old_locus_tag=SFV_2031 NC_008258.1 tRNAscan-SE tRNA 2061276 2061351 . - . ID=rna42;Parent=gene2264;anticodon=(pos:complement(2061316..2061318));gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 2061276 2061351 . - . ID=id362;Parent=rna42;anticodon=(pos:complement(2061316..2061318));gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 2061354 2061430 . - . ID=gene2265;Name=SFV_RS11385;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11385;old_locus_tag=SFV_2032 NC_008258.1 tRNAscan-SE tRNA 2061354 2061430 . - . ID=rna43;Parent=gene2265;anticodon=(pos:complement(2061394..2061396));gbkey=tRNA;product=tRNA-Lys NC_008258.1 tRNAscan-SE exon 2061354 2061430 . - . ID=id363;Parent=rna43;anticodon=(pos:complement(2061394..2061396));gbkey=tRNA;product=tRNA-Lys NC_008258.1 RefSeq gene 2061432 2061507 . - . ID=gene2266;Name=SFV_RS11390;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11390;old_locus_tag=SFV_2033 NC_008258.1 tRNAscan-SE tRNA 2061432 2061507 . - . ID=rna44;Parent=gene2266;anticodon=(pos:complement(2061472..2061474));gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 2061432 2061507 . - . ID=id364;Parent=rna44;anticodon=(pos:complement(2061472..2061474));gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 2061534 2062388 . - . ID=gene2267;Name=SFV_RS11395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11395;pseudo=true NC_008258.1 Protein Homology CDS 2061534 2062388 . - 0 ID=cds2222;Parent=gene2267;gbkey=CDS;product=antiterminator;pseudo=true;transl_except=(pos:complement(2062077..2062079)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2062385 2062750 . - . ID=gene2268;Name=SFV_RS11400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11400;old_locus_tag=SFV_2035 NC_008258.1 Protein Homology CDS 2062385 2062750 . - 0 ID=cds2223;Parent=gene2268;Dbxref=Genbank:WP_000140020.1;Name=WP_000140020.1;gbkey=CDS;product=endodeoxyribonuclease;protein_id=WP_000140020.1;transl_table=11 NC_008258.1 RefSeq gene 2062751 2063191 . - . ID=gene2269;Name=SFV_RS11405;end_range=2063191,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11405;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2062751 2063191 . - 0 ID=cds2224;Parent=gene2269;end_range=2063191,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2063070 2063897 . + . ID=id365;gbkey=repeat_region NC_008258.1 RefSeq gene 2063393 2063809 . - . ID=gene2270;Name=SFV_RS11410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11410;old_locus_tag=SFV_2037 NC_008258.1 Protein Homology CDS 2063393 2063809 . - 0 ID=cds2225;Parent=gene2270;Dbxref=Genbank:WP_001265245.1;Name=WP_001265245.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001265245.1;transl_table=11 NC_008258.1 RefSeq gene 2063892 2064215 . + . ID=gene2271;Name=SFV_RS11415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11415 NC_008258.1 Protein Homology CDS 2063892 2064215 . + 0 ID=cds2226;Parent=gene2271;Dbxref=Genbank:WP_000152435.1;Name=WP_000152435.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000152435.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2064169 2064598 . + . ID=id366;gbkey=repeat_region NC_008258.1 RefSeq gene 2064257 2064469 . - . ID=gene2272;Name=SFV_RS11420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11420 NC_008258.1 Protein Homology CDS 2064257 2064469 . - 0 ID=cds2227;Parent=gene2272;Dbxref=Genbank:WP_000935258.1;Name=WP_000935258.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000935258.1;transl_table=11 NC_008258.1 RefSeq gene 2064521 2064697 . + . ID=gene2273;Name=SFV_RS11425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11425 NC_008258.1 Protein Homology CDS 2064521 2064697 . + 0 ID=cds2228;Parent=gene2273;Dbxref=Genbank:WP_032155691.1;Name=WP_032155691.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155691.1;transl_table=11 NC_008258.1 RefSeq gene 2065064 2065486 . - . ID=gene2274;Name=SFV_RS11430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11430 NC_008258.1 Protein Homology CDS 2065064 2065486 . - 0 ID=cds2229;Parent=gene2274;Dbxref=Genbank:WP_001343759.1;Name=WP_001343759.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001343759.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2065493 2066266 . + . ID=id367;gbkey=repeat_region NC_008258.1 RefSeq region 2065495 2066262 . + . ID=id368;gbkey=mobile_element NC_008258.1 RefSeq gene 2065601 2065825 . + . ID=gene2275;Name=SFV_RS11435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11435 NC_008258.1 Protein Homology CDS 2065601 2065825 . + 0 ID=cds2230;Parent=gene2275;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2065852 2066247 . + . ID=gene2276;Name=SFV_RS11440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11440 NC_008258.1 Protein Homology CDS 2065852 2066247 . + 0 ID=cds2231;Parent=gene2276;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 2066379 2066684 . - . ID=gene2277;Name=SFV_RS11445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11445;old_locus_tag=SFV_2040 NC_008258.1 GeneMarkS+ CDS 2066379 2066684 . - 0 ID=cds2232;Parent=gene2277;Dbxref=Genbank:WP_001206588.1;Name=WP_001206588.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001206588.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2066704 2067481 . + . ID=id369;gbkey=repeat_region NC_008258.1 RefSeq region 2066708 2067475 . - . ID=id370;gbkey=mobile_element NC_008258.1 RefSeq gene 2066723 2067226 . - . ID=gene2278;Name=SFV_RS11450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11450;old_locus_tag=SFV_2041 NC_008258.1 Protein Homology CDS 2066723 2067226 . - 0 ID=cds2233;Parent=gene2278;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 2067453 2067629 . + . ID=gene2279;Name=SFV_RS11455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11455 NC_008258.1 Protein Homology CDS 2067453 2067629 . + 0 ID=cds2234;Parent=gene2279;Dbxref=Genbank:WP_044023995.1;Name=WP_044023995.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044023995.1;transl_table=11 NC_008258.1 RefSeq gene 2067629 2068666 . + . ID=gene2280;Name=SFV_RS11460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11460;old_locus_tag=SFV_2043 NC_008258.1 Protein Homology CDS 2067629 2068666 . + 0 ID=cds2235;Parent=gene2280;Dbxref=Genbank:WP_005105555.1;Name=WP_005105555.1;gbkey=CDS;product=integrase;protein_id=WP_005105555.1;transl_table=11 NC_008258.1 RefSeq gene 2068694 2068783 . - . ID=gene2281;Name=SFV_RS11465;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11465;old_locus_tag=SFV_2044 NC_008258.1 tRNAscan-SE tRNA 2068694 2068783 . - . ID=rna45;Parent=gene2281;anticodon=(pos:complement(2068747..2068749));gbkey=tRNA;product=tRNA-Ser NC_008258.1 tRNAscan-SE exon 2068694 2068783 . - . ID=id371;Parent=rna45;anticodon=(pos:complement(2068747..2068749));gbkey=tRNA;product=tRNA-Ser NC_008258.1 RefSeq gene 2068877 2069674 . + . ID=gene2282;Name=SFV_RS11470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11470;old_locus_tag=SFV_2045 NC_008258.1 Protein Homology CDS 2068877 2069674 . + 0 ID=cds2236;Parent=gene2282;Dbxref=Genbank:WP_001325918.1;Name=WP_001325918.1;Note=Mlc anti-repressor%3B regulates ptsG by binding and inactivating Mlc;gbkey=CDS;product=protein MtfA;protein_id=WP_001325918.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2069751 2069851 . + . ID=id372;gbkey=repeat_region NC_008258.1 RefSeq gene 2069775 2069850 . + . ID=gene2283;Name=SFV_RS11475;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11475;old_locus_tag=SFV_2046 NC_008258.1 tRNAscan-SE tRNA 2069775 2069850 . + . ID=rna46;Parent=gene2283;anticodon=(pos:2069808..2069810);gbkey=tRNA;product=tRNA-Asn NC_008258.1 tRNAscan-SE exon 2069775 2069850 . + . ID=id373;Parent=rna46;anticodon=(pos:2069808..2069810);gbkey=tRNA;product=tRNA-Asn NC_008258.1 RefSeq gene 2070012 2071274 . + . ID=gene2284;Name=SFV_RS11480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11480;pseudo=true NC_008258.1 Protein Homology CDS 2070012 2071274 . + 0 ID=cds2237;Parent=gene2284;gbkey=CDS;product=integrase;pseudo=true;transl_except=(pos:2070324..2070326%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 2071372 2072624 . + . ID=id374;gbkey=repeat_region NC_008258.1 RefSeq region 2071373 2072622 . - . ID=id375;gbkey=mobile_element NC_008258.1 RefSeq gene 2071381 2072059 . - . ID=gene2285;Name=SFV_RS11485;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11485;old_locus_tag=SFV_2048;pseudo=true NC_008258.1 Protein Homology CDS 2071381 2072059 . - 0 ID=cds2238;Parent=gene2285;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2072248 2072550 . - . ID=gene2286;Name=SFV_RS11490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11490;old_locus_tag=SFV_2049 NC_008258.1 Protein Homology CDS 2072248 2072550 . - 0 ID=cds2239;Parent=gene2286;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 2072606 2073112 . + . ID=gene2287;Name=SFV_RS11495;end_range=2073112,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11495;partial=true;pseudo=true;start_range=.,2072606 NC_008258.1 Protein Homology CDS 2072606 2073112 . + 0 ID=cds2240;Parent=gene2287;end_range=2073112,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=shikimate transporter;pseudo=true;start_range=.,2072606;transl_table=11 NC_008258.1 RefSeq repeat_region 2073110 2074378 . + . ID=id376;gbkey=repeat_region NC_008258.1 RefSeq region 2073113 2074376 . + . ID=id377;gbkey=mobile_element NC_008258.1 RefSeq gene 2073177 2073479 . + . ID=gene2288;Name=SFV_RS11500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11500;old_locus_tag=SFV_2051 NC_008258.1 Protein Homology CDS 2073177 2073479 . + 0 ID=cds2241;Parent=gene2288;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 2073620 2074333 . + . ID=gene2289;Name=SFV_RS11505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11505;old_locus_tag=SFV_2052 NC_008258.1 Protein Homology CDS 2073620 2074333 . + 0 ID=cds2242;Parent=gene2289;Dbxref=Genbank:WP_000940373.1;Name=WP_000940373.1;gbkey=CDS;product=transposase;protein_id=WP_000940373.1;transl_table=11 NC_008258.1 RefSeq gene 2074377 2074583 . + . ID=gene2290;Name=SFV_RS11510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11510 NC_008258.1 GeneMarkS+ CDS 2074377 2074583 . + 0 ID=cds2243;Parent=gene2290;Dbxref=Genbank:WP_000466572.1;Name=WP_000466572.1;gbkey=CDS;product=serine transporter;protein_id=WP_000466572.1;transl_table=11 NC_008258.1 RefSeq gene 2074685 2076139 . + . ID=gene2291;Name=SFV_RS11515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11515;old_locus_tag=SFV_2053 NC_008258.1 Protein Homology CDS 2074685 2076139 . + 0 ID=cds2244;Parent=gene2291;Dbxref=Genbank:WP_001060217.1;Name=WP_001060217.1;Note=Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile;gbkey=CDS;product=AMP nucleosidase;protein_id=WP_001060217.1;transl_table=11 NC_008258.1 RefSeq gene 2076482 2077198 . + . ID=gene2292;Name=SFV_RS11520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11520;old_locus_tag=SFV_2054 NC_008258.1 Protein Homology CDS 2076482 2077198 . + 0 ID=cds2245;Parent=gene2292;Dbxref=Genbank:WP_000532920.1;Name=WP_000532920.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000532920.1;transl_table=11 NC_008258.1 RefSeq gene 2077654 2077729 . - . ID=gene2293;Name=SFV_RS11525;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11525;old_locus_tag=SFV_2055 NC_008258.1 tRNAscan-SE tRNA 2077654 2077729 . - . ID=rna47;Parent=gene2293;anticodon=(pos:complement(2077694..2077696));gbkey=tRNA;product=tRNA-Asn NC_008258.1 tRNAscan-SE exon 2077654 2077729 . - . ID=id378;Parent=rna47;anticodon=(pos:complement(2077694..2077696));gbkey=tRNA;product=tRNA-Asn NC_008258.1 RefSeq gene 2077830 2077991 . - . ID=gene2294;Name=SFV_RS11530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11530 NC_008258.1 Protein Homology CDS 2077830 2077991 . - 0 ID=cds2246;Parent=gene2294;Dbxref=Genbank:WP_000901954.1;Name=WP_000901954.1;gbkey=CDS;product=transporter;protein_id=WP_000901954.1;transl_table=11 NC_008258.1 RefSeq gene 2078139 2078636 . - . ID=gene2295;Name=SFV_RS11535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11535;old_locus_tag=SFV_2056 NC_008258.1 Protein Homology CDS 2078139 2078636 . - 0 ID=cds2247;Parent=gene2295;Dbxref=Genbank:WP_005105557.1;Name=WP_005105557.1;gbkey=CDS;product=multidrug transporter MatE;protein_id=WP_005105557.1;transl_table=11 NC_008258.1 RefSeq gene 2078627 2079127 . - . ID=gene2296;Name=SFV_RS11540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11540;old_locus_tag=SFV_2057 NC_008258.1 Protein Homology CDS 2078627 2079127 . - 0 ID=cds2248;Parent=gene2296;Dbxref=Genbank:WP_005049323.1;Name=WP_005049323.1;gbkey=CDS;product=multidrug transporter MatE;protein_id=WP_005049323.1;transl_table=11 NC_008258.1 RefSeq gene 2079462 2079537 . + . ID=gene2297;Name=SFV_RS11545;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11545;old_locus_tag=SFV_2058 NC_008258.1 tRNAscan-SE tRNA 2079462 2079537 . + . ID=rna48;Parent=gene2297;anticodon=(pos:2079495..2079497);gbkey=tRNA;product=tRNA-Asn NC_008258.1 tRNAscan-SE exon 2079462 2079537 . + . ID=id379;Parent=rna48;anticodon=(pos:2079495..2079497);gbkey=tRNA;product=tRNA-Asn NC_008258.1 RefSeq gene 2079575 2080525 . - . ID=gene2298;Name=cbl;gbkey=Gene;gene=cbl;gene_biotype=protein_coding;locus_tag=SFV_RS11550;old_locus_tag=SFV_2059 NC_008258.1 Protein Homology CDS 2079575 2080525 . - 0 ID=cds2249;Parent=gene2298;Dbxref=Genbank:WP_001010988.1;Name=WP_001010988.1;Note=LysR-type transcriptional regulator similar to CysB%3B contains helix-turn-helix (HTH) motif%3B in Escherichia coli this protein regulates two operons consisting of ABC transporters that are part of the cys regulon%3B regulated by CysB%3B DNA-binding transcriptional activator for the ssuEADCB and tauABCD operons;gbkey=CDS;gene=cbl;product=CysB family transcriptional regulator;protein_id=WP_001010988.1;transl_table=11 NC_008258.1 RefSeq gene 2080627 2081544 . - . ID=gene2299;Name=SFV_RS11555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11555;old_locus_tag=SFV_2060 NC_008258.1 Protein Homology CDS 2080627 2081544 . - 0 ID=cds2250;Parent=gene2299;Dbxref=Genbank:WP_001011445.1;Name=WP_001011445.1;Note=Transcriptional activator for the hut%2C put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001011445.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2081848 2081948 . + . ID=id380;gbkey=repeat_region NC_008258.1 RefSeq gene 2081872 2081947 . + . ID=gene2300;Name=SFV_RS11560;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS11560;old_locus_tag=SFV_2061 NC_008258.1 tRNAscan-SE tRNA 2081872 2081947 . + . ID=rna49;Parent=gene2300;anticodon=(pos:2081905..2081907);gbkey=tRNA;product=tRNA-Asn NC_008258.1 tRNAscan-SE exon 2081872 2081947 . + . ID=id381;Parent=rna49;anticodon=(pos:2081905..2081907);gbkey=tRNA;product=tRNA-Asn NC_008258.1 RefSeq gene 2082003 2082935 . - . ID=gene2301;Name=SFV_RS11565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11565;old_locus_tag=SFV_2062 NC_008258.1 Protein Homology CDS 2082003 2082935 . - 0 ID=cds2251;Parent=gene2301;Dbxref=Genbank:WP_024260283.1;Name=WP_024260283.1;Note=catalyzes th removal of D-alanine and attachment of the murein lipoprotein to the peptidoglycan tetrapeptide chain;gbkey=CDS;product=transpeptidase;protein_id=WP_024260283.1;transl_table=11 NC_008258.1 RefSeq gene 2083000 2084079 . - . ID=gene2302;Name=cobT;gbkey=Gene;gene=cobT;gene_biotype=protein_coding;locus_tag=SFV_RS11570;old_locus_tag=SFV_2063 NC_008258.1 Protein Homology CDS 2083000 2084079 . - 0 ID=cds2252;Parent=gene2302;Dbxref=Genbank:WP_001165577.1;Name=WP_001165577.1;Note=catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5%2C6-dimethylbenzimidazole;gbkey=CDS;gene=cobT;product=nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;protein_id=WP_001165577.1;transl_table=11 NC_008258.1 RefSeq gene 2084091 2084834 . - . ID=gene2303;Name=cobS;gbkey=Gene;gene=cobS;gene_biotype=protein_coding;locus_tag=SFV_RS11575;old_locus_tag=SFV_2064 NC_008258.1 Protein Homology CDS 2084091 2084834 . - 0 ID=cds2253;Parent=gene2303;Dbxref=Genbank:WP_005105559.1;Name=WP_005105559.1;Note=catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole;gbkey=CDS;gene=cobS;product=adenosylcobinamide-GDP ribazoletransferase;protein_id=WP_005105559.1;transl_table=11 NC_008258.1 RefSeq gene 2084831 2085376 . - . ID=gene2304;Name=cobU;gbkey=Gene;gene=cobU;gene_biotype=protein_coding;locus_tag=SFV_RS11580;old_locus_tag=SFV_2065 NC_008258.1 Protein Homology CDS 2084831 2085376 . - 0 ID=cds2254;Parent=gene2304;Dbxref=Genbank:WP_000973201.1;Name=WP_000973201.1;Note=catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP;gbkey=CDS;gene=cobU;product=adenosylcobinamide kinase;protein_id=WP_000973201.1;transl_table=11 NC_008258.1 RefSeq gene 2085841 2086005 . - . ID=gene2305;Name=SFV_RS11590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11590 NC_008258.1 Protein Homology CDS 2085841 2086005 . - 0 ID=cds2255;Parent=gene2305;Dbxref=Genbank:WP_001128468.1;Name=WP_001128468.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001128468.1;transl_table=11 NC_008258.1 RefSeq gene 2085952 2086266 . - . ID=gene2306;Name=SFV_RS11595;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11595;partial=true;pseudo=true;start_range=.,2085952 NC_008258.1 Protein Homology CDS 2085952 2086266 . - 0 ID=cds2256;Parent=gene2306;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2085952;transl_table=11 NC_008258.1 RefSeq gene 2086373 2087215 . - . ID=gene2307;Name=SFV_RS11600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11600;old_locus_tag=SFV_2066 NC_008258.1 Protein Homology CDS 2086373 2087215 . - 0 ID=cds2257;Parent=gene2307;Dbxref=Genbank:WP_000711882.1;Name=WP_000711882.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000711882.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2087437 2089226 . + . ID=id382;gbkey=repeat_region NC_008258.1 RefSeq region 2087441 2087625 . + . ID=id383;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq region 2087642 2088635 . + . ID=id384;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2087736 2087861 . + . ID=gene2308;Name=SFV_RS11605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11605;old_locus_tag=SFV_2067 NC_008258.1 Protein Homology CDS 2087736 2087861 . + 0 ID=cds2258;Parent=gene2308;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 2088002 2088634 . + . ID=gene2309;Name=SFV_RS11610;end_range=2088634,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11610;old_locus_tag=SFV_2068;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2088002 2088634 . + 0 ID=cds2259;Parent=gene2309;end_range=2088634,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2088579 2089139 . - . ID=gene2310;Name=SFV_RS11615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11615 NC_008258.1 Protein Homology CDS 2088579 2089139 . - 0 ID=cds2260;Parent=gene2310;Dbxref=Genbank:WP_049760366.1;Name=WP_049760366.1;gbkey=CDS;product=transposase;protein_id=WP_049760366.1;transl_table=11 NC_008258.1 RefSeq region 2088636 2089221 . + . ID=id385;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2089221 2090057 . - . ID=gene2311;Name=SFV_RS11620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11620;old_locus_tag=SFV_2069;partial=true;pseudo=true;start_range=.,2089221 NC_008258.1 Protein Homology CDS 2089221 2090057 . - 0 ID=cds2261;Parent=gene2311;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,2089221;transl_table=11 NC_008258.1 RefSeq repeat_region 2089736 2090275 . + . ID=id386;gbkey=repeat_region NC_008258.1 RefSeq gene 2090239 2091663 . + . ID=gene2312;Name=sbcB;gbkey=Gene;gene=sbcB;gene_biotype=protein_coding;locus_tag=SFV_RS11625;old_locus_tag=SFV_2070 NC_008258.1 Protein Homology CDS 2090239 2091663 . + 0 ID=cds2262;Parent=gene2312;Dbxref=Genbank:WP_000132547.1;Name=WP_000132547.1;Note=Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates;gbkey=CDS;gene=sbcB;product=exonuclease I;protein_id=WP_000132547.1;transl_table=11 NC_008258.1 RefSeq gene 2091706 2091933 . - . ID=gene2313;Name=SFV_RS11630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11630;old_locus_tag=SFV_2071 NC_008258.1 Protein Homology CDS 2091706 2091933 . - 0 ID=cds2263;Parent=gene2313;Dbxref=Genbank:WP_000985273.1;Name=WP_000985273.1;gbkey=CDS;product=membrane protein;protein_id=WP_000985273.1;transl_table=11 NC_008258.1 RefSeq gene 2091947 2093005 . - . ID=gene2314;Name=SFV_RS11635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11635;old_locus_tag=SFV_2072 NC_008258.1 Protein Homology CDS 2091947 2093005 . - 0 ID=cds2264;Parent=gene2314;Dbxref=Genbank:WP_000492292.1;Name=WP_000492292.1;gbkey=CDS;product=membrane protein;protein_id=WP_000492292.1;transl_table=11 NC_008258.1 RefSeq gene 2093184 2094542 . - . ID=gene2315;Name=SFV_RS11640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11640;old_locus_tag=SFV_2073 NC_008258.1 Protein Homology CDS 2093184 2094542 . - 0 ID=cds2265;Parent=gene2315;Dbxref=Genbank:WP_000019203.1;Name=WP_000019203.1;gbkey=CDS;product=putrescine/spermidine ABC transporter;protein_id=WP_000019203.1;transl_table=11 NC_008258.1 RefSeq gene 2094755 2095738 . - . ID=gene2316;Name=SFV_RS11645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11645;old_locus_tag=SFV_2074 NC_008258.1 Protein Homology CDS 2094755 2095738 . - 0 ID=cds2266;Parent=gene2316;Dbxref=Genbank:WP_000803326.1;Name=WP_000803326.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000803326.1;transl_table=11 NC_008258.1 RefSeq gene 2095784 2096608 . - . ID=gene2317;Name=SFV_RS11650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11650;old_locus_tag=SFV_2075 NC_008258.1 Protein Homology CDS 2095784 2096608 . - 0 ID=cds2267;Parent=gene2317;Dbxref=Genbank:WP_000754740.1;Name=WP_000754740.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000754740.1;transl_table=11 NC_008258.1 RefSeq gene 2096691 2096945 . - . ID=gene2318;Name=SFV_RS11655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11655;old_locus_tag=SFV_2076 NC_008258.1 Protein Homology CDS 2096691 2096945 . - 0 ID=cds2268;Parent=gene2318;Dbxref=Genbank:WP_000767829.1;Name=WP_000767829.1;gbkey=CDS;product=toxin YoeB;protein_id=WP_000767829.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2096948 2097722 . + . ID=id387;gbkey=repeat_region NC_008258.1 RefSeq region 2096952 2097719 . - . ID=id388;gbkey=mobile_element NC_008258.1 RefSeq gene 2096967 2097470 . - . ID=gene2319;Name=SFV_RS11660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11660;old_locus_tag=SFV_2077 NC_008258.1 Protein Homology CDS 2096967 2097470 . - 0 ID=cds2269;Parent=gene2319;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 2097698 2097970 . - . ID=gene2320;Name=SFV_RS11665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11665;old_locus_tag=SFV_2078 NC_008258.1 Protein Homology CDS 2097698 2097970 . - 0 ID=cds2270;Parent=gene2320;Dbxref=Genbank:WP_001259256.1;Name=WP_001259256.1;Note=Antitoxin that counteracts the effect of the YoeB toxin;gbkey=CDS;product=antitoxin YefM;protein_id=WP_001259256.1;transl_table=11 NC_008258.1 RefSeq gene 2098440 2099339 . + . ID=gene2321;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=SFV_RS11670;old_locus_tag=SFV_2079 NC_008258.1 Protein Homology CDS 2098440 2099339 . + 0 ID=cds2271;Parent=gene2321;Dbxref=Genbank:WP_000131772.1;Name=WP_000131772.1;Note=long form of enzyme%3B catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate%3B crucial role in histidine biosynthesis%3B forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors;gbkey=CDS;gene=hisG;product=ATP phosphoribosyltransferase;protein_id=WP_000131772.1;transl_table=11 NC_008258.1 RefSeq gene 2099345 2100649 . + . ID=gene2322;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=SFV_RS11675;old_locus_tag=SFV_2080 NC_008258.1 Protein Homology CDS 2099345 2100649 . + 0 ID=cds2272;Parent=gene2322;Dbxref=Genbank:WP_000009598.1;Name=WP_000009598.1;Note=catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis%3B functions as a dimer;gbkey=CDS;gene=hisD;product=bifunctional histidinal dehydrogenase/ histidinol dehydrogenase;protein_id=WP_000009598.1;transl_table=11 NC_008258.1 RefSeq gene 2100646 2101716 . + . ID=gene2323;Name=SFV_RS11680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11680;old_locus_tag=SFV_2081 NC_008258.1 Protein Homology CDS 2100646 2101716 . + 0 ID=cds2273;Parent=gene2323;Dbxref=Genbank:WP_000108918.1;Name=WP_000108918.1;Note=catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis;gbkey=CDS;product=histidinol-phosphate aminotransferase;protein_id=WP_000108918.1;transl_table=11 NC_008258.1 RefSeq gene 2101716 2102783 . + . ID=gene2324;Name=SFV_RS11685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11685;old_locus_tag=SFV_2082 NC_008258.1 Protein Homology CDS 2101716 2102783 . + 0 ID=cds2274;Parent=gene2324;Dbxref=Genbank:WP_000080068.1;Name=WP_000080068.1;Note=catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate;gbkey=CDS;product=histidine biosynthesis bifunctional protein HisB;protein_id=WP_000080068.1;transl_table=11 NC_008258.1 RefSeq gene 2102783 2103373 . + . ID=gene2325;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=SFV_RS11690;old_locus_tag=SFV_2083 NC_008258.1 Protein Homology CDS 2102783 2103373 . + 0 ID=cds2275;Parent=gene2325;Dbxref=Genbank:WP_001103547.1;Name=WP_001103547.1;Note=with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate%2C 5-aminoimidazol-4-carboxamide ribonucleotide%2C and glutamate in histidine biosynthesis%3B the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide;gbkey=CDS;gene=hisH;product=imidazole glycerol phosphate synthase subunit HisH;protein_id=WP_001103547.1;transl_table=11 NC_008258.1 RefSeq gene 2103373 2104110 . + . ID=gene2326;Name=SFV_RS11695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11695;old_locus_tag=SFV_2084 NC_008258.1 Protein Homology CDS 2103373 2104110 . + 0 ID=cds2276;Parent=gene2326;Dbxref=Genbank:WP_000586440.1;Name=WP_000586440.1;gbkey=CDS;product=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase;protein_id=WP_000586440.1;transl_table=11 NC_008258.1 RefSeq gene 2104092 2104868 . + . ID=gene2327;Name=SFV_RS11700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11700;old_locus_tag=SFV_2085 NC_008258.1 Protein Homology CDS 2104092 2104868 . + 0 ID=cds2277;Parent=gene2327;Dbxref=Genbank:WP_000880171.1;Name=WP_000880171.1;gbkey=CDS;product=imidazole glycerol phosphate synthase subunit HisF;protein_id=WP_000880171.1;transl_table=11 NC_008258.1 RefSeq gene 2104862 2105473 . + . ID=gene2328;Name=SFV_RS11705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11705;old_locus_tag=SFV_2086 NC_008258.1 Protein Homology CDS 2104862 2105473 . + 0 ID=cds2278;Parent=gene2328;Dbxref=Genbank:WP_000954863.1;Name=WP_000954863.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis;gbkey=CDS;product=histidine biosynthesis bifunctional protein HisIE;protein_id=WP_000954863.1;transl_table=11 NC_008258.1 RefSeq gene 2105659 2106636 . - . ID=gene2329;Name=SFV_RS11710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11710;old_locus_tag=SFV_2087 NC_008258.1 Protein Homology CDS 2105659 2106636 . - 0 ID=cds2279;Parent=gene2329;Dbxref=Genbank:WP_005049214.1;Name=WP_005049214.1;Note=regulator of length of O-antigen component of lipopolysaccharide chains;gbkey=CDS;product=chain length determinant protein;protein_id=WP_005049214.1;transl_table=11 NC_008258.1 RefSeq gene 2106782 2107902 . - . ID=gene2330;Name=SFV_RS11715;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11715;pseudo=true NC_008258.1 Protein Homology CDS 2106782 2107902 . - 0 ID=cds2280;Parent=gene2330;Note=catalyzes the formation of UDP-glucuronate from UDP-glucose;exception=annotated by transcript or proteomic data;gbkey=CDS;product=UDP-glucose 6-dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2108152 2109558 . - . ID=gene2331;Name=SFV_RS11720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11720;old_locus_tag=SFV_2089 NC_008258.1 Protein Homology CDS 2108152 2109558 . - 0 ID=cds2281;Parent=gene2331;Dbxref=Genbank:WP_000043429.1;Name=WP_000043429.1;Note=catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate;gbkey=CDS;product=6-phosphogluconate dehydrogenase decarboxylating;protein_id=WP_000043429.1;transl_table=11 NC_008258.1 RefSeq gene 2109667 2110026 . - . ID=gene2332;Name=SFV_RS11725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11725 NC_008258.1 Protein Homology CDS 2109667 2110026 . - 0 ID=cds2282;Parent=gene2332;Dbxref=Genbank:WP_011110604.1;Name=WP_011110604.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110604.1;transl_table=11 NC_008258.1 RefSeq gene 2110023 2110574 . - . ID=gene2333;Name=SFV_RS11730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11730 NC_008258.1 Protein Homology CDS 2110023 2110574 . - 0 ID=cds2283;Parent=gene2333;Dbxref=Genbank:WP_011069433.1;Name=WP_011069433.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069433.1;transl_table=11 NC_008258.1 RefSeq gene 2110675 2111274 . - . ID=gene2334;Name=SFV_RS11735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11735;old_locus_tag=SFV_2090 NC_008258.1 Protein Homology CDS 2110675 2111274 . - 0 ID=cds2284;Parent=gene2334;Dbxref=Genbank:WP_000055830.1;Name=WP_000055830.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000055830.1;transl_table=11 NC_008258.1 RefSeq gene 2111446 2111937 . - . ID=gene2335;Name=SFV_RS11740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11740 NC_008258.1 Protein Homology CDS 2111446 2111937 . - 0 ID=cds2285;Parent=gene2335;Dbxref=Genbank:WP_011069434.1;Name=WP_011069434.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069434.1;transl_table=11 NC_008258.1 RefSeq gene 2111995 2112384 . - . ID=gene2336;Name=SFV_RS11745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11745 NC_008258.1 Protein Homology CDS 2111995 2112384 . - 0 ID=cds2286;Parent=gene2336;Dbxref=Genbank:WP_000274879.1;Name=WP_000274879.1;gbkey=CDS;product=protein rfbJ;protein_id=WP_000274879.1;transl_table=11 NC_008258.1 RefSeq gene 2112447 2112821 . - . ID=gene2337;Name=SFV_RS11750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11750 NC_008258.1 Protein Homology CDS 2112447 2112821 . - 0 ID=cds2287;Parent=gene2337;Dbxref=Genbank:WP_011069435.1;Name=WP_011069435.1;gbkey=CDS;product=bactoprenol-linked glucose translocase;protein_id=WP_011069435.1;transl_table=11 NC_008258.1 RefSeq gene 2112825 2113973 . - . ID=gene2338;Name=SFV_RS11755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11755;old_locus_tag=SFV_2091 NC_008258.1 Protein Homology CDS 2112825 2113973 . - 0 ID=cds2288;Parent=gene2338;Dbxref=Genbank:WP_001059773.1;Name=WP_001059773.1;gbkey=CDS;product=O-antigen polymerase;protein_id=WP_001059773.1;transl_table=11 NC_008258.1 RefSeq gene 2113993 2114862 . - . ID=gene2339;Name=SFV_RS11760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11760;old_locus_tag=SFV_2092 NC_008258.1 Protein Homology CDS 2113993 2114862 . - 0 ID=cds2289;Parent=gene2339;Dbxref=Genbank:WP_005049197.1;Name=WP_005049197.1;gbkey=CDS;product=dTDP-rhamnosyl transferase RfbG;protein_id=WP_005049197.1;transl_table=11 NC_008258.1 RefSeq gene 2114891 2115781 . - . ID=gene2340;Name=SFV_RS11765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11765;old_locus_tag=SFV_2093 NC_008258.1 Protein Homology CDS 2114891 2115781 . - 0 ID=cds2290;Parent=gene2340;Dbxref=Genbank:WP_001087598.1;Name=WP_001087598.1;gbkey=CDS;product=dTDP-rhamnosyl transferase RfbF;protein_id=WP_001087598.1;transl_table=11 NC_008258.1 RefSeq gene 2115811 2117067 . - . ID=gene2341;Name=SFV_RS11770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11770;old_locus_tag=SFV_2094 NC_008258.1 Protein Homology CDS 2115811 2117067 . - 0 ID=cds2291;Parent=gene2341;Dbxref=Genbank:WP_000022477.1;Name=WP_000022477.1;gbkey=CDS;product=transporter;protein_id=WP_000022477.1;transl_table=11 NC_008258.1 RefSeq gene 2117083 2117628 . - . ID=gene2342;Name=SFV_RS11775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11775;old_locus_tag=SFV_2095 NC_008258.1 Protein Homology CDS 2117083 2117628 . - 0 ID=cds2292;Parent=gene2342;Dbxref=Genbank:WP_001100804.1;Name=WP_001100804.1;gbkey=CDS;product=dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=WP_001100804.1;transl_table=11 NC_008258.1 RefSeq gene 2117633 2118511 . - . ID=gene2343;Name=SFV_RS11780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11780;old_locus_tag=SFV_2096 NC_008258.1 Protein Homology CDS 2117633 2118511 . - 0 ID=cds2293;Parent=gene2343;Dbxref=Genbank:WP_000857517.1;Name=WP_000857517.1;gbkey=CDS;product=glucose-1-phosphate thymidylyltransferase;protein_id=WP_000857517.1;transl_table=11 NC_008258.1 RefSeq gene 2118570 2119469 . - . ID=gene2344;Name=SFV_RS11785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11785;old_locus_tag=SFV_2097 NC_008258.1 Protein Homology CDS 2118570 2119469 . - 0 ID=cds2294;Parent=gene2344;Dbxref=Genbank:WP_001023623.1;Name=WP_001023623.1;Note=with dTDP-4-dehydrorhamnose 3%2C5-epimerase forms a complex known as dTDP-L-rhamnose synthetase%3B catalyzes the reduction of dTDP-4-dehydro-6-deoxy-L-mannose to dTDP-L-rhamnose;gbkey=CDS;product=dTDP-4-dehydrorhamnose reductase;protein_id=WP_001023623.1;transl_table=11 NC_008258.1 RefSeq gene 2119469 2120554 . - . ID=gene2345;Name=SFV_RS11790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11790;old_locus_tag=SFV_2098 NC_008258.1 Protein Homology CDS 2119469 2120554 . - 0 ID=cds2295;Parent=gene2345;Dbxref=Genbank:WP_000699405.1;Name=WP_000699405.1;gbkey=CDS;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_000699405.1;transl_table=11 NC_008258.1 RefSeq gene 2120927 2121820 . - . ID=gene2346;Name=SFV_RS11795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11795;old_locus_tag=SFV_2099 NC_008258.1 Protein Homology CDS 2120927 2121820 . - 0 ID=cds2296;Parent=gene2346;Dbxref=Genbank:WP_000183060.1;Name=WP_000183060.1;gbkey=CDS;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=WP_000183060.1;transl_table=11 NC_008258.1 RefSeq gene 2121995 2123389 . - . ID=gene2347;Name=wcaM;gbkey=Gene;gene=wcaM;gene_biotype=pseudogene;locus_tag=SFV_RS11800;pseudo=true NC_008258.1 Protein Homology CDS 2121995 2123389 . - 0 ID=cds2297;Parent=gene2347;Note=WcaM from Salmonella enterica is essential for biofilm formation on HEp-2 cells and chicken intestinal tissue but not on a plastic surface%3B may be involved in the biosynthesis of colanic acid;gbkey=CDS;gene=wcaM;product=colanic acid biosynthesis protein;pseudo=true;transl_except=(pos:complement(2122880..2122882)%2Caa:Other),(pos:complement(2122661..2122663)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2123400 2124620 . - . ID=gene2348;Name=SFV_RS11805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11805;old_locus_tag=SFV_2101 NC_008258.1 Protein Homology CDS 2123400 2124620 . - 0 ID=cds2298;Parent=gene2348;Dbxref=Genbank:WP_000862616.1;Name=WP_000862616.1;gbkey=CDS;product=colanic acid biosynthesis glycosyltransferase WcaL;protein_id=WP_000862616.1;transl_table=11 NC_008258.1 RefSeq gene 2124617 2125897 . - . ID=gene2349;Name=SFV_RS11810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11810;old_locus_tag=SFV_2102 NC_008258.1 Protein Homology CDS 2124617 2125897 . - 0 ID=cds2299;Parent=gene2349;Dbxref=Genbank:WP_000770854.1;Name=WP_000770854.1;gbkey=CDS;product=colanic acid biosynthesis pyruvyl transferase WcaK;protein_id=WP_000770854.1;transl_table=11 NC_008258.1 RefSeq gene 2126077 2127555 . - . ID=gene2350;Name=SFV_RS11815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11815;old_locus_tag=SFV_2103 NC_008258.1 Protein Homology CDS 2126077 2127555 . - 0 ID=cds2300;Parent=gene2350;Dbxref=Genbank:WP_000058508.1;Name=WP_000058508.1;gbkey=CDS;product=colanic acid exporter;protein_id=WP_000058508.1;transl_table=11 NC_008258.1 RefSeq gene 2127557 2128951 . - . ID=gene2351;Name=SFV_RS11820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11820;old_locus_tag=SFV_2104 NC_008258.1 Protein Homology CDS 2127557 2128951 . - 0 ID=cds2301;Parent=gene2351;Dbxref=Genbank:WP_000183130.1;Name=WP_000183130.1;Note=WcaJ%3B glucose-1-phosphate transferase responsible for the addition of the first glucose-1-phosphate from UDP-glucose to the lipid carrier undecaprenyl phosphate in the biosynthesis of colanic acid;gbkey=CDS;product=UDP-glucose lipid carrier transferase;protein_id=WP_000183130.1;transl_table=11 NC_008258.1 RefSeq gene 2129006 2130377 . - . ID=gene2352;Name=SFV_RS11825;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11825;pseudo=true NC_008258.1 Protein Homology CDS 2129006 2130377 . - 0 ID=cds2302;Parent=gene2352;Note=capsular polysaccharide biosynthesis protein%3B catalyzes the formation of D-mannose 6-phosphate from alpha-D-mannose 1-phosphate;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphomannomutase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2130570 2132006 . - . ID=gene2353;Name=cpsB;gbkey=Gene;gene=cpsB;gene_biotype=protein_coding;locus_tag=SFV_RS11830;old_locus_tag=SFV_2106 NC_008258.1 Protein Homology CDS 2130570 2132006 . - 0 ID=cds2303;Parent=gene2353;Dbxref=Genbank:WP_000079298.1;Name=WP_000079298.1;Note=capsular polysaccharide colanic acid biosynthesis protein%3B catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate;gbkey=CDS;gene=cpsB;product=mannose-1-phosphate guanyltransferase;protein_id=WP_000079298.1;transl_table=11 NC_008258.1 RefSeq gene 2132009 2133232 . - . ID=gene2354;Name=SFV_RS11835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11835;old_locus_tag=SFV_2107 NC_008258.1 Protein Homology CDS 2132009 2133232 . - 0 ID=cds2304;Parent=gene2354;Dbxref=Genbank:WP_000699699.1;Name=WP_000699699.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_000699699.1;transl_table=11 NC_008258.1 RefSeq gene 2133229 2133708 . - . ID=gene2355;Name=SFV_RS11840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11840;old_locus_tag=SFV_2108 NC_008258.1 Protein Homology CDS 2133229 2133708 . - 0 ID=cds2305;Parent=gene2355;Dbxref=Genbank:WP_000479838.1;Name=WP_000479838.1;Note=catalyzes the formation of GDP and D-mannose from GDP-D-mannose%3B also hydrolyzes GDP-glucose;gbkey=CDS;product=GDP-mannose mannosyl hydrolase;protein_id=WP_000479838.1;transl_table=11 NC_008258.1 RefSeq gene 2133708 2134676 . - . ID=gene2356;Name=SFV_RS11845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11845;old_locus_tag=SFV_2109 NC_008258.1 Protein Homology CDS 2133708 2134676 . - 0 ID=cds2306;Parent=gene2356;Dbxref=Genbank:WP_000043580.1;Name=WP_000043580.1;Note=bifunctional GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase%3Bcatalyzes the formation of GDP-fucose from GDP-4-dehydro-6-deoxy-D-mannose;gbkey=CDS;product=GDP-fucose synthetase;protein_id=WP_000043580.1;transl_table=11 NC_008258.1 RefSeq gene 2134679 2135800 . - . ID=gene2357;Name=SFV_RS11850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11850;old_locus_tag=SFV_2110 NC_008258.1 Protein Homology CDS 2134679 2135800 . - 0 ID=cds2307;Parent=gene2357;Dbxref=Genbank:WP_000048200.1;Name=WP_000048200.1;Note=catalyzes the formation of GDP-4-dehydro-6-deoxy-D-mannose from GDP mannose;gbkey=CDS;product=GDP-mannose 4%2C6-dehydratase;protein_id=WP_000048200.1;transl_table=11 NC_008258.1 RefSeq gene 2135826 2136374 . - . ID=gene2358;Name=SFV_RS11855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11855;old_locus_tag=SFV_2111 NC_008258.1 Protein Homology CDS 2135826 2136374 . - 0 ID=cds2308;Parent=gene2358;Dbxref=Genbank:WP_001153547.1;Name=WP_001153547.1;gbkey=CDS;product=colanic acid biosynthesis acetyltransferase WcaF;protein_id=WP_001153547.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2136512 2137285 . + . ID=id389;gbkey=repeat_region NC_008258.1 RefSeq region 2136515 2137282 . + . ID=id390;gbkey=mobile_element NC_008258.1 RefSeq gene 2136621 2136845 . + . ID=gene2359;Name=SFV_RS11860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11860 NC_008258.1 Protein Homology CDS 2136621 2136845 . + 0 ID=cds2309;Parent=gene2359;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2136872 2137267 . + . ID=gene2360;Name=SFV_RS11865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11865 NC_008258.1 Protein Homology CDS 2136872 2137267 . + 0 ID=cds2310;Parent=gene2360;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 2137278 2137910 . - . ID=gene2361;Name=SFV_RS11870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11870;old_locus_tag=SFV_2114 NC_008258.1 Protein Homology CDS 2137278 2137910 . - 0 ID=cds2311;Parent=gene2361;Dbxref=Genbank:WP_005105569.1;Name=WP_005105569.1;gbkey=CDS;product=colanic acid biosynthesis glycosyltransferase WcaE;protein_id=WP_005105569.1;transl_table=11 NC_008258.1 RefSeq gene 2137924 2139141 . - . ID=gene2362;Name=wcaD;gbkey=Gene;gene=wcaD;gene_biotype=protein_coding;locus_tag=SFV_RS11875;old_locus_tag=SFV_2115 NC_008258.1 Protein Homology CDS 2137924 2139141 . - 0 ID=cds2312;Parent=gene2362;Dbxref=Genbank:WP_000107779.1;Name=WP_000107779.1;Note=essential for colanic acid biosynthesis%3B colanic acid is an exopolysaccharide produced under stress conditions that confers acid and heat tolerance;gbkey=CDS;gene=wcaD;product=colanic acid biosynthesis protein;protein_id=WP_000107779.1;transl_table=11 NC_008258.1 RefSeq gene 2139116 2140333 . - . ID=gene2363;Name=SFV_RS11880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11880;old_locus_tag=SFV_2116 NC_008258.1 Protein Homology CDS 2139116 2140333 . - 0 ID=cds2313;Parent=gene2363;Dbxref=Genbank:WP_001023926.1;Name=WP_001023926.1;gbkey=CDS;product=colanic acid biosynthesis glycosyltransferase WcaC;protein_id=WP_001023926.1;transl_table=11 NC_008258.1 RefSeq gene 2140330 2140818 . - . ID=gene2364;Name=SFV_RS11885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11885;old_locus_tag=SFV_2117 NC_008258.1 Protein Homology CDS 2140330 2140818 . - 0 ID=cds2314;Parent=gene2364;Dbxref=Genbank:WP_000888740.1;Name=WP_000888740.1;Note=acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit)%3B wcaB is induced in sessile bacteria and by osmotic shock%2C and repressed when grown in rich medium;gbkey=CDS;product=colanic acid biosynthesis acetyltransferase WcaB;protein_id=WP_000888740.1;transl_table=11 NC_008258.1 RefSeq gene 2140821 2141660 . - . ID=gene2365;Name=SFV_RS11890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11890;old_locus_tag=SFV_2118 NC_008258.1 Protein Homology CDS 2140821 2141660 . - 0 ID=cds2315;Parent=gene2365;Dbxref=Genbank:WP_000654503.1;Name=WP_000654503.1;gbkey=CDS;product=glycosyl transferase;protein_id=WP_000654503.1;transl_table=11 NC_008258.1 RefSeq gene 2141753 2143915 . - . ID=gene2366;Name=SFV_RS11895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11895;old_locus_tag=SFV_2119 NC_008258.1 Protein Homology CDS 2141753 2143915 . - 0 ID=cds2316;Parent=gene2366;Dbxref=Genbank:WP_000137201.1;Name=WP_000137201.1;Note=Wzc%3B catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide);gbkey=CDS;product=tyrosine kinase;protein_id=WP_000137201.1;transl_table=11 NC_008258.1 RefSeq gene 2143918 2144361 . - . ID=gene2367;Name=SFV_RS11900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11900;old_locus_tag=SFV_2120 NC_008258.1 Protein Homology CDS 2143918 2144361 . - 0 ID=cds2317;Parent=gene2367;Dbxref=Genbank:WP_000482888.1;Name=WP_000482888.1;Note=Wzb shows phosphatase activity towards the autophosphorylated Wzc protein%2C which induces colanic acid biosynthesis%3B catalyzes the phosphorylation of UDP-glucose dehydrogenase%2C an enzyme involved in colanic acid biosynthesis;gbkey=CDS;product=protein-tyrosine phosphatase;protein_id=WP_000482888.1;transl_table=11 NC_008258.1 RefSeq gene 2144367 2145506 . - . ID=gene2368;Name=SFV_RS11905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11905;old_locus_tag=SFV_2121 NC_008258.1 Protein Homology CDS 2144367 2145506 . - 0 ID=cds2318;Parent=gene2368;Dbxref=Genbank:WP_000978092.1;Name=WP_000978092.1;Note=required for the translocation of capsular polysaccharide through the outer membrane;gbkey=CDS;product=polysaccharide export protein Wza;protein_id=WP_000978092.1;transl_table=11 NC_008258.1 RefSeq gene 2146165 2147748 . + . ID=gene2369;Name=SFV_RS11910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11910;old_locus_tag=SFV_2122 NC_008258.1 Protein Homology CDS 2146165 2147748 . + 0 ID=cds2319;Parent=gene2369;Dbxref=Genbank:WP_000454701.1;Name=WP_000454701.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000454701.1;transl_table=11 NC_008258.1 RefSeq gene 2148200 2150053 . - . ID=gene2370;Name=SFV_RS11915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11915;old_locus_tag=SFV_2123 NC_008258.1 Protein Homology CDS 2148200 2150053 . - 0 ID=cds2320;Parent=gene2370;Dbxref=Genbank:WP_001252354.1;Name=WP_001252354.1;Note=YegA%3B inner membrane protein involved in the assembly of outer membrane proteins (OMPs)%3B asmA-null mutants show low lipopolysaccharide (LPS) levels%2C suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity%2C resulting on altered assembly of OMPs;gbkey=CDS;product=assembly protein;protein_id=WP_001252354.1;transl_table=11 NC_008258.1 RefSeq gene 2150075 2150656 . - . ID=gene2371;Name=SFV_RS11920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11920;old_locus_tag=SFV_2124 NC_008258.1 Protein Homology CDS 2150075 2150656 . - 0 ID=cds2321;Parent=gene2371;Dbxref=Genbank:WP_001234767.1;Name=WP_001234767.1;gbkey=CDS;product=deoxycytidine triphosphate deaminase;protein_id=WP_001234767.1;transl_table=11 NC_008258.1 RefSeq gene 2150748 2151389 . - . ID=gene2372;Name=SFV_RS11925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11925;old_locus_tag=SFV_2125 NC_008258.1 Protein Homology CDS 2150748 2151389 . - 0 ID=cds2322;Parent=gene2372;Dbxref=Genbank:WP_001295424.1;Name=WP_001295424.1;gbkey=CDS;product=uridine kinase;protein_id=WP_001295424.1;transl_table=11 NC_008258.1 RefSeq gene 2151707 2152129 . + . ID=gene2373;Name=SFV_RS11930;end_range=2152129,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11930;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2151707 2152129 . + 0 ID=cds2323;Parent=gene2373;end_range=2152129,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=diguanylate cyclase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2152119 2153579 . + . ID=id391;gbkey=repeat_region NC_008258.1 RefSeq region 2152120 2153493 . + . ID=id392;gbkey=mobile_element NC_008258.1 RefSeq gene 2152151 2153347 . - . ID=gene2374;Name=SFV_RS11935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11935;old_locus_tag=SFV_2126 NC_008258.1 Protein Homology CDS 2152151 2153347 . - 0 ID=cds2324;Parent=gene2374;Dbxref=Genbank:WP_005105574.1;Name=WP_005105574.1;gbkey=CDS;product=transposase;protein_id=WP_005105574.1;transl_table=11 NC_008258.1 RefSeq gene 2153781 2154440 . + . ID=gene2375;Name=SFV_RS11940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11940;old_locus_tag=SFV_2127 NC_008258.1 Protein Homology CDS 2153781 2154440 . + 0 ID=cds2325;Parent=gene2375;Dbxref=Genbank:WP_000003196.1;Name=WP_000003196.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000003196.1;transl_table=11 NC_008258.1 RefSeq gene 2154437 2155198 . + . ID=gene2376;Name=SFV_RS11945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11945;old_locus_tag=SFV_2128 NC_008258.1 Protein Homology CDS 2154437 2155198 . + 0 ID=cds2326;Parent=gene2376;Dbxref=Genbank:WP_000119064.1;Name=WP_000119064.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000119064.1;transl_table=11 NC_008258.1 RefSeq gene 2155195 2156718 . + . ID=gene2377;Name=SFV_RS11950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11950;old_locus_tag=SFV_2129 NC_008258.1 Protein Homology CDS 2155195 2156718 . + 0 ID=cds2327;Parent=gene2377;Dbxref=Genbank:WP_000805246.1;Name=WP_000805246.1;gbkey=CDS;product=chaperonin;protein_id=WP_000805246.1;transl_table=11 NC_008258.1 RefSeq gene 2157147 2158499 . - . ID=gene2378;Name=SFV_RS11955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11955;old_locus_tag=SFV_2130 NC_008258.1 Protein Homology CDS 2157147 2158499 . - 0 ID=cds2328;Parent=gene2378;Dbxref=Genbank:WP_000469678.1;Name=WP_000469678.1;gbkey=CDS;product=chaperone;protein_id=WP_000469678.1;transl_table=11 NC_008258.1 RefSeq gene 2158633 2159481 . + . ID=gene2379;Name=SFV_RS11960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11960;old_locus_tag=SFV_2131 NC_008258.1 Protein Homology CDS 2158633 2159481 . + 0 ID=cds2329;Parent=gene2379;Dbxref=Genbank:WP_000275664.1;Name=WP_000275664.1;Note=inducible%2C catalyzes the hydrolysis of alkylated DNA%2C releasing 3-methyladenine%2C 3-methylguanine%2C 7-methylguanine and 7-methyladenine;gbkey=CDS;product=3-methyl-adenine DNA glycosylase;protein_id=WP_000275664.1;transl_table=11 NC_008258.1 RefSeq gene 2159591 2162550 . - . ID=gene2380;Name=SFV_RS11965;end_range=2162550,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11965;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2159591 2162550 . - 0 ID=cds2330;Parent=gene2380;end_range=2162550,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=diguanylate cyclase;pseudo=true;transl_except=(pos:complement(2162515..2162517)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 2162479 2163939 . + . ID=id393;gbkey=repeat_region NC_008258.1 RefSeq region 2162564 2163932 . - . ID=id394;gbkey=mobile_element NC_008258.1 RefSeq gene 2162710 2163906 . + . ID=gene2381;Name=SFV_RS11970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11970;old_locus_tag=SFV_2133 NC_008258.1 Protein Homology CDS 2162710 2163906 . + 0 ID=cds2331;Parent=gene2381;Dbxref=Genbank:WP_005105576.1;Name=WP_005105576.1;gbkey=CDS;product=transposase;protein_id=WP_005105576.1;transl_table=11 NC_008258.1 RefSeq gene 2163908 2164960 . + . ID=gene2382;Name=SFV_RS11975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11975;old_locus_tag=SFV_2134 NC_008258.1 Protein Homology CDS 2163908 2164960 . + 0 ID=cds2332;Parent=gene2382;Dbxref=Genbank:WP_005049122.1;Name=WP_005049122.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_005049122.1;transl_table=11 NC_008258.1 RefSeq gene 2164960 2168082 . + . ID=gene2383;Name=SFV_RS11980;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11980;old_locus_tag=SFV_2135;pseudo=true NC_008258.1 Protein Homology CDS 2164960 2168082 . + 0 ID=cds2333;Parent=gene2383;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug transporter;pseudo=true;transl_except=(pos:2167516..2167518%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2168083 2171148 . + . ID=gene2384;Name=SFV_RS11985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11985;old_locus_tag=SFV_2137 NC_008258.1 Protein Homology CDS 2168083 2171148 . + 0 ID=cds2334;Parent=gene2384;Dbxref=Genbank:WP_000667593.1;Name=WP_000667593.1;Note=Part of a tripartite efflux system composed of MdtA%2C MdtB and MdtC which confers resistance against novobiocin and deoxycholate;gbkey=CDS;product=multidrug resistance protein MdtC;protein_id=WP_000667593.1;transl_table=11 NC_008258.1 RefSeq gene 2171149 2172565 . + . ID=gene2385;Name=SFV_RS11990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS11990;old_locus_tag=SFV_2138;pseudo=true NC_008258.1 Protein Homology CDS 2171149 2172565 . + 0 ID=cds2335;Parent=gene2385;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2172562 2173965 . + . ID=gene2386;Name=SFV_RS11995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS11995;old_locus_tag=SFV_2139 NC_008258.1 Protein Homology CDS 2172562 2173965 . + 0 ID=cds2336;Parent=gene2386;Dbxref=Genbank:WP_000675144.1;Name=WP_000675144.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000675144.1;transl_table=11 NC_008258.1 RefSeq gene 2173962 2174684 . + . ID=gene2387;Name=SFV_RS12000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12000;old_locus_tag=SFV_2140 NC_008258.1 Protein Homology CDS 2173962 2174684 . + 0 ID=cds2337;Parent=gene2387;Dbxref=Genbank:WP_000137862.1;Name=WP_000137862.1;Note=response regulator in two-component regulatory system with BaeS%3B regulator of RNA synthesis%2C flagellar biosynthesis%2C chemotaxis and transport;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000137862.1;transl_table=11 NC_008258.1 RefSeq gene 2174875 2175207 . + . ID=gene2388;Name=SFV_RS12005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12005;old_locus_tag=SFV_2141 NC_008258.1 Protein Homology CDS 2174875 2175207 . + 0 ID=cds2338;Parent=gene2388;Dbxref=Genbank:WP_000929408.1;Name=WP_000929408.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000929408.1;transl_table=11 NC_008258.1 RefSeq gene 2175354 2176715 . + . ID=gene2389;Name=SFV_RS12010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12010;old_locus_tag=SFV_2142 NC_008258.1 Protein Homology CDS 2175354 2176715 . + 0 ID=cds2339;Parent=gene2389;Dbxref=Genbank:WP_005049106.1;Name=WP_005049106.1;gbkey=CDS;product=protease;protein_id=WP_005049106.1;transl_table=11 NC_008258.1 RefSeq gene 2176878 2177069 . - . ID=gene2390;Name=SFV_RS12015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12015 NC_008258.1 Protein Homology CDS 2176878 2177069 . - 0 ID=cds2340;Parent=gene2390;Dbxref=Genbank:WP_014532286.1;Name=WP_014532286.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014532286.1;transl_table=11 NC_008258.1 RefSeq gene 2177057 2177389 . - . ID=gene2391;Name=SFV_RS12020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12020;old_locus_tag=SFV_2143 NC_008258.1 Protein Homology CDS 2177057 2177389 . - 0 ID=cds2341;Parent=gene2391;Dbxref=Genbank:WP_001324860.1;Name=WP_001324860.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001324860.1;transl_table=11 NC_008258.1 RefSeq gene 2177782 2178681 . + . ID=gene2392;Name=SFV_RS12025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12025;old_locus_tag=SFV_2144 NC_008258.1 Protein Homology CDS 2177782 2178681 . + 0 ID=cds2342;Parent=gene2392;Dbxref=Genbank:WP_000807346.1;Name=WP_000807346.1;Note=cytosolic protein with phosphatidylglycerol kinase activity%3B undetermined physiological role;gbkey=CDS;product=lipid kinase;protein_id=WP_000807346.1;transl_table=11 NC_008258.1 RefSeq gene 2178763 2179536 . - . ID=gene2393;Name=SFV_RS12030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12030;old_locus_tag=SFV_2145 NC_008258.1 Protein Homology CDS 2178763 2179536 . - 0 ID=cds2343;Parent=gene2393;Dbxref=Genbank:WP_005105579.1;Name=WP_005105579.1;gbkey=CDS;product=galactitol utilization operon repressor;protein_id=WP_005105579.1;transl_table=11 NC_008258.1 RefSeq gene 2179641 2180682 . - . ID=gene2394;Name=SFV_RS12035;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12035;pseudo=true NC_008258.1 Protein Homology CDS 2179641 2180682 . - 0 ID=cds2344;Parent=gene2394;Note=Zn-dependent%3B NAD(P)-binding%3B catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate;exception=annotated by transcript or proteomic data;gbkey=CDS;product=galactitol-1-phosphate 5-dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2180730 2182085 . - . ID=gene2395;Name=SFV_RS12040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12040;old_locus_tag=SFV_2147 NC_008258.1 Protein Homology CDS 2180730 2182085 . - 0 ID=cds2345;Parent=gene2395;Dbxref=Genbank:WP_000490711.1;Name=WP_000490711.1;gbkey=CDS;product=PTS galactitol transporter subunit IIC;protein_id=WP_000490711.1;transl_table=11 NC_008258.1 RefSeq gene 2182089 2182373 . - . ID=gene2396;Name=SFV_RS12045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12045;old_locus_tag=SFV_2148 NC_008258.1 Protein Homology CDS 2182089 2182373 . - 0 ID=cds2346;Parent=gene2396;Dbxref=Genbank:WP_000823288.1;Name=WP_000823288.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=galactitol-specific phosphotransferase enzyme IIB component;protein_id=WP_000823288.1;transl_table=11 NC_008258.1 RefSeq gene 2182404 2182856 . - . ID=gene2397;Name=SFV_RS12050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12050;pseudo=true NC_008258.1 Protein Homology CDS 2182404 2182856 . - 0 ID=cds2347;Parent=gene2397;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS galactitol transporter subunit IIA;pseudo=true;transl_except=(pos:complement(2182533..2182535)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2182866 2184128 . - . ID=gene2398;Name=SFV_RS12055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12055;old_locus_tag=SFV_2150 NC_008258.1 Protein Homology CDS 2182866 2184128 . - 0 ID=cds2348;Parent=gene2398;Dbxref=Genbank:WP_000853873.1;Name=WP_000853873.1;Note=part of the galacitol catabolism pathway%3B with GatY catalyzes the formation of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate from tagatose-1%2C6-bisphosphate;gbkey=CDS;product=tagatose-1%2C6-bisphosphate aldolase;protein_id=WP_000853873.1;transl_table=11 NC_008258.1 RefSeq gene 2184157 2185011 . - . ID=gene2399;Name=gatY;gbkey=Gene;gene=gatY;gene_biotype=protein_coding;locus_tag=SFV_RS12060;old_locus_tag=SFV_2151 NC_008258.1 Protein Homology CDS 2184157 2185011 . - 0 ID=cds2349;Parent=gene2399;Dbxref=Genbank:WP_005105580.1;Name=WP_005105580.1;Note=catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1%2C6-bisphosphate%3B in enteric bacteria there are two D-tagatose 1%2C6-bisphosphate-specific aldolases: KbaY (also called AgaY)%2C involved in catabolism of N-acetyl-galactosamine and D-galactosamine%2C and GatY which is part of the galactitol catabolism pathway;gbkey=CDS;gene=gatY;product=tagatose-1%2C6-bisphosphate aldolase;protein_id=WP_005105580.1;transl_table=11 NC_008258.1 RefSeq gene 2185319 2186371 . - . ID=gene2400;Name=SFV_RS12065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12065;old_locus_tag=SFV_2152 NC_008258.1 Protein Homology CDS 2185319 2186371 . - 0 ID=cds2350;Parent=gene2400;Dbxref=Genbank:WP_000129574.1;Name=WP_000129574.1;Note=catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1%2C6-bisphosphate;gbkey=CDS;product=fructose-bisphosphate aldolase;protein_id=WP_000129574.1;transl_table=11 NC_008258.1 RefSeq gene 2186628 2187905 . + . ID=gene2401;Name=SFV_RS12070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12070;old_locus_tag=SFV_2153 NC_008258.1 Protein Homology CDS 2186628 2187905 . + 0 ID=cds2351;Parent=gene2401;Dbxref=Genbank:WP_000858519.1;Name=WP_000858519.1;gbkey=CDS;product=nucleoside transporter;protein_id=WP_000858519.1;transl_table=11 NC_008258.1 RefSeq gene 2187902 2188905 . + . ID=gene2402;Name=SFV_RS12075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12075;pseudo=true NC_008258.1 Protein Homology CDS 2187902 2188905 . + 0 ID=cds2352;Parent=gene2402;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2188902 2189867 . + . ID=gene2403;Name=SFV_RS12080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12080;old_locus_tag=SFV_2155 NC_008258.1 Protein Homology CDS 2188902 2189867 . + 0 ID=cds2353;Parent=gene2403;Dbxref=Genbank:WP_000011990.1;Name=WP_000011990.1;gbkey=CDS;product=sugar kinase;protein_id=WP_000011990.1;transl_table=11 NC_008258.1 RefSeq gene 2189841 2190587 . - . ID=gene2404;Name=SFV_RS12085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12085;old_locus_tag=SFV_2156 NC_008258.1 Protein Homology CDS 2189841 2190587 . - 0 ID=cds2354;Parent=gene2404;Dbxref=Genbank:WP_000434038.1;Name=WP_000434038.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000434038.1;transl_table=11 NC_008258.1 RefSeq gene 2190635 2191456 . - . ID=gene2405;Name=SFV_RS12090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12090;old_locus_tag=SFV_2157 NC_008258.1 Protein Homology CDS 2190635 2191456 . - 0 ID=cds2355;Parent=gene2405;Dbxref=Genbank:WP_005049077.1;Name=WP_005049077.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005049077.1;transl_table=11 NC_008258.1 RefSeq gene 2191521 2192321 . - . ID=gene2406;Name=SFV_RS12095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12095;old_locus_tag=SFV_2158 NC_008258.1 Protein Homology CDS 2191521 2192321 . - 0 ID=cds2356;Parent=gene2406;Dbxref=Genbank:WP_000822271.1;Name=WP_000822271.1;Note=catalyzes the formation hydroxymethylpyrimidine phosphate from hydroxymethylpyrimidine and the formation of of 4-amino-2-methyl-5-diphosphomethylpyrimidine from hydroxymethylpyrimidine phosphate;gbkey=CDS;product=bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase;protein_id=WP_000822271.1;transl_table=11 NC_008258.1 RefSeq gene 2192318 2193106 . - . ID=gene2407;Name=SFV_RS12100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12100;old_locus_tag=SFV_2159 NC_008258.1 Protein Homology CDS 2192318 2193106 . - 0 ID=cds2357;Parent=gene2407;Dbxref=Genbank:WP_001195611.1;Name=WP_001195611.1;gbkey=CDS;product=hydroxyethylthiazole kinase;protein_id=WP_001195611.1;transl_table=11 NC_008258.1 RefSeq gene 2193329 2193601 . - . ID=gene2408;Name=SFV_RS12105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12105;old_locus_tag=SFV_2160 NC_008258.1 Protein Homology CDS 2193329 2193601 . - 0 ID=cds2358;Parent=gene2408;Dbxref=Genbank:WP_000019944.1;Name=WP_000019944.1;Note=DNA-binding%3B binds the RcnA promotor;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000019944.1;transl_table=11 NC_008258.1 RefSeq gene 2193723 2194571 . + . ID=gene2409;Name=SFV_RS12110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12110;old_locus_tag=SFV_2161 NC_008258.1 Protein Homology CDS 2193723 2194571 . + 0 ID=cds2359;Parent=gene2409;Dbxref=Genbank:WP_000134598.1;Name=WP_000134598.1;Note=membrane protein conferring nickel and cobalt resistance;gbkey=CDS;product=nickel/cobalt efflux system RcnA;protein_id=WP_000134598.1;transl_table=11 NC_008258.1 RefSeq gene 2194790 2195128 . + . ID=gene2410;Name=SFV_RS12115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12115;old_locus_tag=SFV_2162 NC_008258.1 Protein Homology CDS 2194790 2195128 . + 0 ID=cds2360;Parent=gene2410;Dbxref=Genbank:WP_000153074.1;Name=WP_000153074.1;gbkey=CDS;product=nickel/cobalt homeostasis protein RcnB;protein_id=WP_000153074.1;transl_table=11 NC_008258.1 RefSeq gene 2195210 2196243 . - . ID=gene2411;Name=SFV_RS12120;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12120;pseudo=true NC_008258.1 Protein Homology CDS 2195210 2196243 . - 0 ID=cds2361;Parent=gene2411;exception=annotated by transcript or proteomic data;gbkey=CDS;product=adhesin;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2196259 2198739 . - . ID=gene2412;Name=SFV_RS12125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12125;old_locus_tag=SFV_2164 NC_008258.1 Protein Homology CDS 2196259 2198739 . - 0 ID=cds2362;Parent=gene2412;Dbxref=Genbank:WP_000945432.1;Name=WP_000945432.1;gbkey=CDS;product=fimbrial outer membrane usher protein;protein_id=WP_000945432.1;transl_table=11 NC_008258.1 RefSeq gene 2198755 2199375 . - . ID=gene2413;Name=SFV_RS12130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12130;old_locus_tag=SFV_2165 NC_008258.1 Protein Homology CDS 2198755 2199375 . - 0 ID=cds2363;Parent=gene2413;Dbxref=Genbank:WP_000445008.1;Name=WP_000445008.1;gbkey=CDS;product=fimbrial assembly chaperone protein StcB;protein_id=WP_000445008.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2199359 2200134 . + . ID=id395;gbkey=repeat_region NC_008258.1 RefSeq region 2199362 2200129 . - . ID=id396;gbkey=mobile_element NC_008258.1 RefSeq gene 2199377 2199772 . - . ID=gene2414;Name=SFV_RS12135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12135 NC_008258.1 Protein Homology CDS 2199377 2199772 . - 0 ID=cds2364;Parent=gene2414;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 2199799 2200023 . - . ID=gene2415;Name=SFV_RS12140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12140 NC_008258.1 Protein Homology CDS 2199799 2200023 . - 0 ID=cds2365;Parent=gene2415;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2200287 2200829 . - . ID=gene2416;Name=SFV_RS12145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12145;old_locus_tag=SFV_2168 NC_008258.1 Protein Homology CDS 2200287 2200829 . - 0 ID=cds2366;Parent=gene2416;Dbxref=Genbank:WP_000830470.1;Name=WP_000830470.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000830470.1;transl_table=11 NC_008258.1 RefSeq gene 2201018 2201189 . + . ID=gene2417;Name=SFV_RS12150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12150;pseudo=true NC_008258.1 Protein Homology CDS 2201018 2201189 . + 0 ID=cds2367;Parent=gene2417;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:2201021..2201023%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2201122 2201403 . - . ID=gene2418;Name=SFV_RS12155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12155 NC_008258.1 Protein Homology CDS 2201122 2201403 . - 0 ID=cds2368;Parent=gene2418;Dbxref=Genbank:WP_011110605.1;Name=WP_011110605.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110605.1;transl_table=11 NC_008258.1 RefSeq gene 2201665 2202774 . - . ID=gene2419;Name=SFV_RS12160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12160;old_locus_tag=SFV_2169 NC_008258.1 Protein Homology CDS 2201665 2202774 . - 0 ID=cds2369;Parent=gene2419;Dbxref=Genbank:WP_001005448.1;Name=WP_001005448.1;gbkey=CDS;product=protein mrp;protein_id=WP_001005448.1;transl_table=11 NC_008258.1 RefSeq gene 2202906 2204939 . + . ID=gene2420;Name=metG;gbkey=Gene;gene=metG;gene_biotype=protein_coding;locus_tag=SFV_RS12165;old_locus_tag=SFV_2170 NC_008258.1 Protein Homology CDS 2202906 2204939 . + 0 ID=cds2370;Parent=gene2420;Dbxref=Genbank:WP_005049047.1;Name=WP_005049047.1;Note=methionine--tRNA ligase%3B MetRS%3B adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate%3B some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not%3B four subfamilies exist based on sequence motifs and zinc content;gbkey=CDS;gene=metG;product=methionine--tRNA ligase;protein_id=WP_005049047.1;transl_table=11 NC_008258.1 RefSeq gene 2205080 2205283 . + . ID=gene2421;Name=SFV_RS12170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12170 NC_008258.1 Protein Homology CDS 2205080 2205283 . + 0 ID=cds2371;Parent=gene2421;Dbxref=Genbank:WP_001215673.1;Name=WP_001215673.1;gbkey=CDS;product=MolR family transcriptional regulator;protein_id=WP_001215673.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2205267 2206537 . + . ID=id397;gbkey=repeat_region NC_008258.1 RefSeq region 2205271 2206534 . + . ID=id398;gbkey=mobile_element NC_008258.1 RefSeq gene 2205512 2205637 . + . ID=gene2422;Name=SFV_RS12175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12175;old_locus_tag=SFV_2172 NC_008258.1 Protein Homology CDS 2205512 2205637 . + 0 ID=cds2372;Parent=gene2422;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 2205778 2206491 . + . ID=gene2423;Name=SFV_RS12180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12180;old_locus_tag=SFV_2173 NC_008258.1 Protein Homology CDS 2205778 2206491 . + 0 ID=cds2373;Parent=gene2423;Dbxref=Genbank:WP_005105587.1;Name=WP_005105587.1;gbkey=CDS;product=transposase;protein_id=WP_005105587.1;transl_table=11 NC_008258.1 RefSeq gene 2206539 2208335 . + . ID=gene2424;Name=SFV_RS12185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12185 NC_008258.1 Protein Homology CDS 2206539 2208335 . + 0 ID=cds2374;Parent=gene2424;Dbxref=Genbank:WP_044023997.1;Name=WP_044023997.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044023997.1;transl_table=11 NC_008258.1 RefSeq gene 2208790 2210139 . + . ID=gene2425;Name=SFV_RS12190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12190 NC_008258.1 Protein Homology CDS 2208790 2210139 . + 0 ID=cds2375;Parent=gene2425;Dbxref=Genbank:WP_039066294.1;Name=WP_039066294.1;gbkey=CDS;product=regulator;protein_id=WP_039066294.1;transl_table=11 NC_008258.1 RefSeq gene 2210149 2211699 . + . ID=gene2426;Name=SFV_RS12195;end_range=2211699,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12195;old_locus_tag=SFV_2176;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2210149 2211699 . + 0 ID=cds2376;Parent=gene2426;end_range=2211699,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2211756 2212530 . + . ID=id399;gbkey=repeat_region NC_008258.1 RefSeq region 2211760 2212527 . - . ID=id400;gbkey=mobile_element NC_008258.1 RefSeq gene 2212197 2212421 . - . ID=gene2427;Name=SFV_RS12200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12200 NC_008258.1 Protein Homology CDS 2212197 2212421 . - 0 ID=cds2377;Parent=gene2427;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2212563 2213024 . + . ID=gene2428;Name=SFV_RS12205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12205;old_locus_tag=SFV_2179 NC_008258.1 Protein Homology CDS 2212563 2213024 . + 0 ID=cds2378;Parent=gene2428;Dbxref=Genbank:WP_005049020.1;Name=WP_005049020.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005049020.1;transl_table=11 NC_008258.1 RefSeq gene 2213065 2213535 . - . ID=gene2429;Name=SFV_RS12210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12210;old_locus_tag=SFV_2180 NC_008258.1 Protein Homology CDS 2213065 2213535 . - 0 ID=cds2379;Parent=gene2429;Dbxref=Genbank:WP_005063442.1;Name=WP_005063442.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005063442.1;transl_table=11 NC_008258.1 RefSeq gene 2213582 2214301 . - . ID=gene2430;Name=SFV_RS12215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12215;old_locus_tag=SFV_2181 NC_008258.1 Protein Homology CDS 2213582 2214301 . - 0 ID=cds2380;Parent=gene2430;Dbxref=Genbank:WP_005048999.1;Name=WP_005048999.1;Note=unknown function%3B when overproduced it confers drug-resistance;gbkey=CDS;product=two-component system response regulator;protein_id=WP_005048999.1;transl_table=11 NC_008258.1 RefSeq gene 2214298 2215983 . - . ID=gene2431;Name=SFV_RS12220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12220;old_locus_tag=SFV_2182 NC_008258.1 Protein Homology CDS 2214298 2215983 . - 0 ID=cds2381;Parent=gene2431;Dbxref=Genbank:WP_001295431.1;Name=WP_001295431.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_001295431.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2216123 2217553 . + . ID=id401;gbkey=repeat_region NC_008258.1 RefSeq region 2216124 2217551 . + . ID=id402;gbkey=mobile_element NC_008258.1 RefSeq gene 2216209 2217537 . + . ID=gene2432;Name=SFV_RS12225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12225;old_locus_tag=SFV_2183 NC_008258.1 Protein Homology CDS 2216209 2217537 . + 0 ID=cds2382;Parent=gene2432;Dbxref=Genbank:WP_000547276.1;Name=WP_000547276.1;gbkey=CDS;product=transposase;protein_id=WP_000547276.1;transl_table=11 NC_008258.1 RefSeq gene 2217935 2218183 . + . ID=gene2433;Name=SFV_RS12230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12230;old_locus_tag=SFV_2184 NC_008258.1 Protein Homology CDS 2217935 2218183 . + 0 ID=cds2383;Parent=gene2433;Dbxref=Genbank:WP_001261936.1;Name=WP_001261936.1;gbkey=CDS;product=DNA-damage-inducible protein DinI;protein_id=WP_001261936.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2217971 2225161 . + . ID=id403;gbkey=repeat_region NC_008258.1 RefSeq gene 2218299 2218568 . - . ID=gene2434;Name=SFV_RS12235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12235;old_locus_tag=SFV_2185 NC_008258.1 Protein Homology CDS 2218299 2218568 . - 0 ID=cds2384;Parent=gene2434;Dbxref=Genbank:WP_000937511.1;Name=WP_000937511.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937511.1;transl_table=11 NC_008258.1 RefSeq gene 2218637 2219293 . + . ID=gene2435;Name=SFV_RS12240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12240;old_locus_tag=SFV_2186 NC_008258.1 Protein Homology CDS 2218637 2219293 . + 0 ID=cds2385;Parent=gene2435;Dbxref=Genbank:WP_000742379.1;Name=WP_000742379.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000742379.1;transl_table=11 NC_008258.1 RefSeq gene 2219609 2221252 . + . ID=gene2436;Name=SFV_RS24505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24505;old_locus_tag=SFV_2187 NC_008258.1 Protein Homology CDS 2219609 2221252 . + 0 ID=cds2386;Parent=gene2436;Dbxref=Genbank:WP_011587244.1;Name=WP_011587244.1;gbkey=CDS;product=invasion plasmid antigen;protein_id=WP_011587244.1;transl_table=11 NC_008258.1 RefSeq gene 2221253 2221432 . - . ID=gene2437;Name=SFV_RS12250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12250 NC_008258.1 Protein Homology CDS 2221253 2221432 . - 0 ID=cds2387;Parent=gene2437;Dbxref=Genbank:WP_001039899.1;Name=WP_001039899.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039899.1;transl_table=11 NC_008258.1 RefSeq gene 2221432 2222055 . - . ID=gene2438;Name=SFV_RS12255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12255;old_locus_tag=SFV_2188 NC_008258.1 Protein Homology CDS 2221432 2222055 . - 0 ID=cds2388;Parent=gene2438;Dbxref=Genbank:WP_005105593.1;Name=WP_005105593.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105593.1;transl_table=11 NC_008258.1 RefSeq gene 2222006 2223421 . - . ID=gene2439;Name=SFV_RS12260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12260;old_locus_tag=SFV_2189 NC_008258.1 Protein Homology CDS 2222006 2223421 . - 0 ID=cds2389;Parent=gene2439;Dbxref=Genbank:WP_005105594.1;Name=WP_005105594.1;gbkey=CDS;product=tail protein;protein_id=WP_005105594.1;transl_table=11 NC_008258.1 RefSeq gene 2223585 2223986 . - . ID=gene2440;Name=SFV_RS12265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12265;old_locus_tag=SFV_2190 NC_008258.1 Protein Homology CDS 2223585 2223986 . - 0 ID=cds2390;Parent=gene2440;Dbxref=Genbank:WP_005105595.1;Name=WP_005105595.1;gbkey=CDS;product=tail fiber assembly protein;protein_id=WP_005105595.1;transl_table=11 NC_008258.1 RefSeq gene 2223989 2224402 . - . ID=gene2441;Name=SFV_RS12270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12270 NC_008258.1 Protein Homology CDS 2223989 2224402 . - 0 ID=cds2391;Parent=gene2441;Dbxref=Genbank:WP_005105596.1;Name=WP_005105596.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105596.1;transl_table=11 NC_008258.1 RefSeq region 2224389 2225156 . + . ID=id404;gbkey=mobile_element NC_008258.1 RefSeq gene 2224495 2224719 . + . ID=gene2442;Name=SFV_RS12275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12275 NC_008258.1 Protein Homology CDS 2224495 2224719 . + 0 ID=cds2392;Parent=gene2442;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2224746 2225141 . + . ID=gene2443;Name=SFV_RS12280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12280 NC_008258.1 Protein Homology CDS 2224746 2225141 . + 0 ID=cds2393;Parent=gene2443;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2225166 2226602 . + . ID=id405;gbkey=repeat_region NC_008258.1 RefSeq gene 2225388 2225849 . + . ID=gene2444;Name=SFV_RS12285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12285;old_locus_tag=SFV_2193 NC_008258.1 Protein Homology CDS 2225388 2225849 . + 0 ID=cds2394;Parent=gene2444;Dbxref=Genbank:WP_000750297.1;Name=WP_000750297.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000750297.1;transl_table=11 NC_008258.1 RefSeq region 2225828 2226595 . - . ID=id406;gbkey=mobile_element NC_008258.1 RefSeq gene 2225843 2226346 . - . ID=gene2445;Name=SFV_RS12290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12290;old_locus_tag=SFV_2194 NC_008258.1 Protein Homology CDS 2225843 2226346 . - 0 ID=cds2395;Parent=gene2445;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 2226601 2227671 . - . ID=gene2446;Name=SFV_RS12295;end_range=2227671,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12295;old_locus_tag=SFV_2196;partial=true;pseudo=true;start_range=.,2226601 NC_008258.1 Protein Homology CDS 2226601 2227671 . - 0 ID=cds2396;Parent=gene2446;end_range=2227671,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=phage tail protein;pseudo=true;start_range=.,2226601;transl_table=11 NC_008258.1 RefSeq gene 2227769 2227960 . + . ID=gene2447;Name=SFV_RS12300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12300 NC_008258.1 Protein Homology CDS 2227769 2227960 . + 0 ID=cds2397;Parent=gene2447;Dbxref=Genbank:WP_005063603.1;Name=WP_005063603.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005063603.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2227941 2229237 . + . ID=id407;gbkey=repeat_region NC_008258.1 RefSeq region 2227942 2229232 . - . ID=id408;gbkey=mobile_element NC_008258.1 RefSeq gene 2227985 2228803 . - . ID=gene2448;Name=SFV_RS12305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12305;old_locus_tag=SFV_2197 NC_008258.1 Protein Homology CDS 2227985 2228803 . - 0 ID=cds2398;Parent=gene2448;Dbxref=Genbank:WP_000336644.1;Name=WP_000336644.1;gbkey=CDS;product=transposase;protein_id=WP_000336644.1;transl_table=11 NC_008258.1 RefSeq gene 2228839 2228964 . - . ID=gene2449;Name=SFV_RS12310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12310;old_locus_tag=SFV_2198 NC_008258.1 Protein Homology CDS 2228839 2228964 . - 0 ID=cds2399;Parent=gene2449;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 2229234 2230004 . + . ID=gene2450;Name=SFV_RS12315;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12315;old_locus_tag=SFV_2199;partial=true;pseudo=true;start_range=.,2229234 NC_008258.1 Protein Homology CDS 2229234 2230004 . + 0 ID=cds2400;Parent=gene2450;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=integrase;pseudo=true;start_range=.,2229234;transl_table=11 NC_008258.1 RefSeq gene 2230079 2230306 . + . ID=gene2451;Name=SFV_RS12320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12320 NC_008258.1 Protein Homology CDS 2230079 2230306 . + 0 ID=cds2401;Parent=gene2451;Dbxref=Genbank:WP_005063560.1;Name=WP_005063560.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005063560.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2230275 2231590 . + . ID=id409;gbkey=repeat_region NC_008258.1 RefSeq region 2230278 2231587 . + . ID=id410;gbkey=mobile_element NC_008258.1 RefSeq gene 2230332 2230658 . + . ID=gene2452;Name=SFV_RS12325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12325;old_locus_tag=SFV_2201 NC_008258.1 Protein Homology CDS 2230332 2230658 . + 0 ID=cds2402;Parent=gene2452;Dbxref=Genbank:WP_000165225.1;Name=WP_000165225.1;gbkey=CDS;product=transposase;protein_id=WP_000165225.1;transl_table=11 NC_008258.1 RefSeq gene 2230658 2231545 . + . ID=gene2453;Name=SFV_RS12330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12330;old_locus_tag=SFV_2202 NC_008258.1 Protein Homology CDS 2230658 2231545 . + 0 ID=cds2403;Parent=gene2453;Dbxref=Genbank:WP_011587247.1;Name=WP_011587247.1;gbkey=CDS;product=transposase;protein_id=WP_011587247.1;transl_table=11 NC_008258.1 RefSeq gene 2231542 2232043 . + . ID=gene2454;Name=SFV_RS12335;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12335;pseudo=true NC_008258.1 Protein Homology CDS 2231542 2232043 . + 0 ID=cds2404;Parent=gene2454;exception=annotated by transcript or proteomic data;gbkey=CDS;product=MerR family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2232103 2232210 . + . ID=gene2455;Name=SFV_RS12340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12340;old_locus_tag=SFV_2203 NC_008258.1 Protein Homology CDS 2232103 2232210 . + 0 ID=cds2405;Parent=gene2455;Dbxref=Genbank:WP_001216963.1;Name=WP_001216963.1;gbkey=CDS;product=membrane protein;protein_id=WP_001216963.1;transl_table=11 NC_008258.1 RefSeq gene 2232191 2232922 . - . ID=gene2456;Name=SFV_RS12345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12345;old_locus_tag=SFV_2204 NC_008258.1 Protein Homology CDS 2232191 2232922 . - 0 ID=cds2406;Parent=gene2456;Dbxref=Genbank:WP_000783112.1;Name=WP_000783112.1;gbkey=CDS;product=osmoprotectant uptake system permease;protein_id=WP_000783112.1;transl_table=11 NC_008258.1 RefSeq gene 2232927 2233853 . - . ID=gene2457;Name=SFV_RS12350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12350;old_locus_tag=SFV_2205 NC_008258.1 Protein Homology CDS 2232927 2233853 . - 0 ID=cds2407;Parent=gene2457;Dbxref=Genbank:WP_000569352.1;Name=WP_000569352.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000569352.1;transl_table=11 NC_008258.1 RefSeq gene 2233846 2235003 . - . ID=gene2458;Name=SFV_RS12355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12355;old_locus_tag=SFV_2206 NC_008258.1 Protein Homology CDS 2233846 2235003 . - 0 ID=cds2408;Parent=gene2458;Dbxref=Genbank:WP_000221769.1;Name=WP_000221769.1;gbkey=CDS;product=osmoprotectant uptake system permease;protein_id=WP_000221769.1;transl_table=11 NC_008258.1 RefSeq gene 2235010 2235927 . - . ID=gene2459;Name=SFV_RS12360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12360;old_locus_tag=SFV_2207 NC_008258.1 Protein Homology CDS 2235010 2235927 . - 0 ID=cds2409;Parent=gene2459;Dbxref=Genbank:WP_001130297.1;Name=WP_001130297.1;gbkey=CDS;product=osmoprotectant uptake system substrate-binding protein;protein_id=WP_001130297.1;transl_table=11 NC_008258.1 RefSeq gene 2236179 2238476 . - . ID=gene2460;Name=SFV_RS12365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12365;old_locus_tag=SFV_2208 NC_008258.1 Protein Homology CDS 2236179 2238476 . - 0 ID=cds2410;Parent=gene2460;Dbxref=Genbank:WP_000871528.1;Name=WP_000871528.1;Note=catalyzes the hydrolysis of terminal beta-D-glucosyl residues;gbkey=CDS;product=beta-D-glucoside glucohydrolase;protein_id=WP_000871528.1;transl_table=11 NC_008258.1 RefSeq gene 2238672 2240387 . + . ID=gene2461;Name=SFV_RS12370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12370;old_locus_tag=SFV_2209 NC_008258.1 Protein Homology CDS 2238672 2240387 . + 0 ID=cds2411;Parent=gene2461;Dbxref=Genbank:WP_000097356.1;Name=WP_000097356.1;Note=component of the membrane-bound D-lactate oxidase%2C FAD-binding%2C NADH independent;gbkey=CDS;product=lactate dehydrogenase;protein_id=WP_000097356.1;transl_table=11 NC_008258.1 RefSeq gene 2240425 2241357 . - . ID=gene2462;Name=pbpG;gbkey=Gene;gene=pbpG;gene_biotype=protein_coding;locus_tag=SFV_RS12375;old_locus_tag=SFV_2210 NC_008258.1 Protein Homology CDS 2240425 2241357 . - 0 ID=cds2412;Parent=gene2462;Dbxref=Genbank:WP_011587248.1;Name=WP_011587248.1;Note=specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi%3B Penicillin-binding protein 7;gbkey=CDS;gene=pbpG;product=D-alanyl-D-alanine endopeptidase;protein_id=WP_011587248.1;transl_table=11 NC_008258.1 RefSeq gene 2241531 2242118 . - . ID=gene2463;Name=SFV_RS12380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12380;old_locus_tag=SFV_2211 NC_008258.1 Protein Homology CDS 2241531 2242118 . - 0 ID=cds2413;Parent=gene2463;Dbxref=Genbank:WP_005063535.1;Name=WP_005063535.1;gbkey=CDS;product=membrane protein;protein_id=WP_005063535.1;transl_table=11 NC_008258.1 RefSeq gene 2242288 2242866 . + . ID=gene2464;Name=SFV_RS12385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12385;old_locus_tag=SFV_2212 NC_008258.1 Protein Homology CDS 2242288 2242866 . + 0 ID=cds2414;Parent=gene2464;Dbxref=Genbank:WP_000365433.1;Name=WP_000365433.1;gbkey=CDS;product=membrane protein;protein_id=WP_000365433.1;transl_table=11 NC_008258.1 RefSeq gene 2242983 2243750 . - . ID=gene2465;Name=SFV_RS12390;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12390;pseudo=true NC_008258.1 Protein Homology CDS 2242983 2243750 . - 0 ID=cds2415;Parent=gene2465;gbkey=CDS;product=oxidoreductase;pseudo=true;transl_except=(pos:complement(2243742..2243744)%2Caa:Other),(pos:complement(2243358..2243360)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2243803 2245239 . - . ID=gene2466;Name=SFV_RS12395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12395;old_locus_tag=SFV_2214 NC_008258.1 Protein Homology CDS 2243803 2245239 . - 0 ID=cds2416;Parent=gene2466;Dbxref=Genbank:WP_001078127.1;Name=WP_001078127.1;Note=may be involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride;gbkey=CDS;product=multidrug resistance outer membrane protein MdtQ;protein_id=WP_001078127.1;transl_table=11 NC_008258.1 RefSeq gene 2245463 2245546 . + . ID=gene2467;Name=SFV_RS12400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12400 NC_008258.1 Protein Homology CDS 2245463 2245546 . + 0 ID=cds2417;Parent=gene2467;Dbxref=Genbank:WP_000691708.1;Name=WP_000691708.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000691708.1;transl_table=11 NC_008258.1 RefSeq gene 2245917 2246864 . - . ID=gene2468;Name=SFV_RS12405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12405;old_locus_tag=SFV_2215 NC_008258.1 Protein Homology CDS 2245917 2246864 . - 0 ID=cds2418;Parent=gene2468;Dbxref=Genbank:WP_011587249.1;Name=WP_011587249.1;gbkey=CDS;product=tRNA-dihydrouridine synthase C;protein_id=WP_011587249.1;transl_table=11 NC_008258.1 RefSeq gene 2247103 2247501 . + . ID=gene2469;Name=SFV_RS12410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12410;old_locus_tag=SFV_2216 NC_008258.1 Protein Homology CDS 2247103 2247501 . + 0 ID=cds2419;Parent=gene2469;Dbxref=Genbank:WP_011587250.1;Name=WP_011587250.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011587250.1;transl_table=11 NC_008258.1 RefSeq gene 2247498 2248193 . + . ID=gene2470;Name=SFV_RS12415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12415;old_locus_tag=SFV_2217 NC_008258.1 Protein Homology CDS 2247498 2248193 . + 0 ID=cds2420;Parent=gene2470;Dbxref=Genbank:WP_000968213.1;Name=WP_000968213.1;gbkey=CDS;product=membrane protein;protein_id=WP_000968213.1;transl_table=11 NC_008258.1 RefSeq gene 2248323 2249207 . + . ID=gene2471;Name=SFV_RS12420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12420;old_locus_tag=SFV_2218 NC_008258.1 Protein Homology CDS 2248323 2249207 . + 0 ID=cds2421;Parent=gene2471;Dbxref=Genbank:WP_000553555.1;Name=WP_000553555.1;Note=Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis;gbkey=CDS;product=cytidine deaminase;protein_id=WP_000553555.1;transl_table=11 NC_008258.1 RefSeq gene 2249357 2250076 . + . ID=gene2472;Name=SFV_RS12425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12425;old_locus_tag=SFV_2219 NC_008258.1 Protein Homology CDS 2249357 2250076 . + 0 ID=cds2422;Parent=gene2472;Dbxref=Genbank:WP_000920064.1;Name=WP_000920064.1;Note=involved in vancomycin sensitivity and other barrier functions of the cell envelope;gbkey=CDS;product=protein SanA;protein_id=WP_000920064.1;transl_table=11 NC_008258.1 RefSeq gene 2250079 2250318 . + . ID=gene2473;Name=SFV_RS12430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12430;old_locus_tag=SFV_2220 NC_008258.1 Protein Homology CDS 2250079 2250318 . + 0 ID=cds2423;Parent=gene2473;Dbxref=Genbank:WP_000383096.1;Name=WP_000383096.1;gbkey=CDS;product=DUF2542 domain-containing protein;protein_id=WP_000383096.1;transl_table=11 NC_008258.1 RefSeq gene 2250513 2251751 . + . ID=gene2474;Name=SFV_RS12435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12435;old_locus_tag=SFV_2221 NC_008258.1 Protein Homology CDS 2250513 2251751 . + 0 ID=cds2424;Parent=gene2474;Dbxref=Genbank:WP_001136325.1;Name=WP_001136325.1;gbkey=CDS;product=dihydropyrimidine dehydrogenase subunit A;protein_id=WP_001136325.1;transl_table=11 NC_008258.1 RefSeq gene 2251745 2252958 . + . ID=gene2475;Name=SFV_RS12440;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12440;pseudo=true NC_008258.1 Protein Homology CDS 2251745 2252958 . + 0 ID=cds2425;Parent=gene2475;exception=annotated by transcript or proteomic data;gbkey=CDS;product=dihydropyrimidine dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2252994 2254004 . - . ID=gene2476;Name=mglC;gbkey=Gene;gene=mglC;gene_biotype=protein_coding;locus_tag=SFV_RS12445;old_locus_tag=SFV_2223 NC_008258.1 Protein Homology CDS 2252994 2254004 . - 0 ID=cds2426;Parent=gene2476;Dbxref=Genbank:WP_001275118.1;Name=WP_001275118.1;Note=ABC transporter%3B functions in galactose transport%3B part of MglA2C2B transporter complex;gbkey=CDS;gene=mglC;product=galactoside ABC transporter permease;protein_id=WP_001275118.1;transl_table=11 NC_008258.1 RefSeq gene 2254020 2255540 . - . ID=gene2477;Name=SFV_RS12450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12450;old_locus_tag=SFV_2224 NC_008258.1 Protein Homology CDS 2254020 2255540 . - 0 ID=cds2427;Parent=gene2477;Dbxref=Genbank:WP_000255054.1;Name=WP_000255054.1;gbkey=CDS;product=galactose/methyl galactoside import ATP-binding protein MglA;protein_id=WP_000255054.1;transl_table=11 NC_008258.1 RefSeq gene 2255601 2256599 . - . ID=gene2478;Name=SFV_RS12455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12455;old_locus_tag=SFV_2225 NC_008258.1 Protein Homology CDS 2255601 2256599 . - 0 ID=cds2428;Parent=gene2478;Dbxref=Genbank:WP_001036964.1;Name=WP_001036964.1;Note=wtih MglAC is involved in the transport of beta-methylgalactoside;gbkey=CDS;product=D-galactose-binding periplasmic protein;protein_id=WP_001036964.1;transl_table=11 NC_008258.1 RefSeq gene 2256879 2257919 . - . ID=gene2479;Name=SFV_RS12460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12460;old_locus_tag=SFV_2226 NC_008258.1 Protein Homology CDS 2256879 2257919 . - 0 ID=cds2429;Parent=gene2479;Dbxref=Genbank:WP_000628659.1;Name=WP_000628659.1;Note=controls transcription of galETKM;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000628659.1;transl_table=11 NC_008258.1 RefSeq gene 2257909 2258112 . + . ID=gene2480;Name=SFV_RS12465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12465 NC_008258.1 Protein Homology CDS 2257909 2258112 . + 0 ID=cds2430;Parent=gene2480;Dbxref=Genbank:WP_032155550.1;Name=WP_032155550.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155550.1;transl_table=11 NC_008258.1 RefSeq gene 2258061 2259137 . - . ID=gene2481;Name=SFV_RS12470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12470;old_locus_tag=SFV_2227 NC_008258.1 Protein Homology CDS 2258061 2259137 . - 0 ID=cds2431;Parent=gene2481;Dbxref=Genbank:WP_000440871.1;Name=WP_000440871.1;gbkey=CDS;product=membrane protein;protein_id=WP_000440871.1;transl_table=11 NC_008258.1 RefSeq gene 2259154 2259822 . - . ID=gene2482;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=SFV_RS12475;old_locus_tag=SFV_2228 NC_008258.1 Protein Homology CDS 2259154 2259822 . - 0 ID=cds2432;Parent=gene2482;Dbxref=Genbank:WP_001139613.1;Name=WP_001139613.1;Note=involved in the first step of tetrahydrofolate biosynthesis%3B catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1%2C2%2C3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water%3B forms a homopolymer;gbkey=CDS;gene=folE;product=GTP cyclohydrolase 1;protein_id=WP_001139613.1;transl_table=11 NC_008258.1 RefSeq gene 2259976 2260152 . + . ID=gene2483;Name=SFV_RS12480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12480 NC_008258.1 Protein Homology CDS 2259976 2260152 . + 0 ID=cds2433;Parent=gene2483;Dbxref=Genbank:WP_001308773.1;Name=WP_001308773.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308773.1;transl_table=11 NC_008258.1 RefSeq gene 2260080 2260916 . + . ID=gene2484;Name=SFV_RS12485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12485;old_locus_tag=SFV_2229 NC_008258.1 Protein Homology CDS 2260080 2260916 . + 0 ID=cds2434;Parent=gene2484;Dbxref=Genbank:WP_000425441.1;Name=WP_000425441.1;gbkey=CDS;product=S-formylglutathione hydrolase YeiG;protein_id=WP_000425441.1;transl_table=11 NC_008258.1 RefSeq gene 2260948 2262939 . - . ID=gene2485;Name=SFV_RS12490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12490;old_locus_tag=SFV_2230 NC_008258.1 Protein Homology CDS 2260948 2262939 . - 0 ID=cds2435;Parent=gene2485;Dbxref=Genbank:WP_000489212.1;Name=WP_000489212.1;Note=Cir%3B FeuA%3B CirA%3B receptor protein for siderophores (colicin IA%2C IB and V) and microcins (E492%2C H47%2C and M)%3B TonB-dependent%3B able to transport monomers%2C dimer%2C and linear trimers of 2%2C3-dihydorxybenzoylserine%3B outer membrane protein;gbkey=CDS;product=catecholate siderophore receptor CirA;protein_id=WP_000489212.1;transl_table=11 NC_008258.1 RefSeq gene 2262932 2263131 . - . ID=gene2486;Name=SFV_RS12495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12495;pseudo=true NC_008258.1 Protein Homology CDS 2262932 2263131 . - 0 ID=cds2436;Parent=gene2486;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2263231 2264700 . - . ID=gene2487;Name=SFV_RS12500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12500;old_locus_tag=SFV_2231 NC_008258.1 Protein Homology CDS 2263231 2264700 . - 0 ID=cds2437;Parent=gene2487;Dbxref=Genbank:WP_000534384.1;Name=WP_000534384.1;gbkey=CDS;product=lysine transporter;protein_id=WP_000534384.1;transl_table=11 NC_008258.1 RefSeq gene 2264906 2265787 . - . ID=gene2488;Name=SFV_RS12505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12505;old_locus_tag=SFV_2232 NC_008258.1 Protein Homology CDS 2264906 2265787 . - 0 ID=cds2438;Parent=gene2488;Dbxref=Genbank:WP_000548291.1;Name=WP_000548291.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000548291.1;transl_table=11 NC_008258.1 RefSeq gene 2265886 2266935 . + . ID=gene2489;Name=SFV_RS12510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12510;old_locus_tag=SFV_2233 NC_008258.1 Protein Homology CDS 2265886 2266935 . + 0 ID=cds2439;Parent=gene2489;Dbxref=Genbank:WP_000182053.1;Name=WP_000182053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000182053.1;transl_table=11 NC_008258.1 RefSeq gene 2267009 2267866 . + . ID=gene2490;Name=SFV_RS12515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12515;old_locus_tag=SFV_2234 NC_008258.1 Protein Homology CDS 2267009 2267866 . + 0 ID=cds2440;Parent=gene2490;Dbxref=Genbank:WP_000873892.1;Name=WP_000873892.1;Note=Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues;gbkey=CDS;product=endonuclease;protein_id=WP_000873892.1;transl_table=11 NC_008258.1 RefSeq gene 2267869 2268957 . + . ID=gene2491;Name=SFV_RS12520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12520;old_locus_tag=SFV_2235 NC_008258.1 Protein Homology CDS 2267869 2268957 . + 0 ID=cds2441;Parent=gene2491;Dbxref=Genbank:WP_001064964.1;Name=WP_001064964.1;gbkey=CDS;product=kinase;protein_id=WP_001064964.1;transl_table=11 NC_008258.1 RefSeq gene 2269013 2270263 . - . ID=gene2492;Name=SFV_RS12525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12525;old_locus_tag=SFV_2236 NC_008258.1 Protein Homology CDS 2269013 2270263 . - 0 ID=cds2442;Parent=gene2492;Dbxref=Genbank:WP_000382946.1;Name=WP_000382946.1;gbkey=CDS;product=nucleoside permease;protein_id=WP_000382946.1;transl_table=11 NC_008258.1 RefSeq gene 2270363 2271304 . - . ID=gene2493;Name=rihB;gbkey=Gene;gene=rihB;gene_biotype=protein_coding;locus_tag=SFV_RS12530;old_locus_tag=SFV_2237 NC_008258.1 Protein Homology CDS 2270363 2271304 . - 0 ID=cds2443;Parent=gene2493;Dbxref=Genbank:WP_000415462.1;Name=WP_000415462.1;Note=Hydrolyzes cytidine or uridine to ribose and cytosine or uracil%2C respectively;gbkey=CDS;gene=rihB;product=pyrimidine-specific ribonucleoside hydrolase RihB;protein_id=WP_000415462.1;transl_table=11 NC_008258.1 RefSeq gene 2271435 2272133 . + . ID=gene2494;Name=SFV_RS12535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12535;old_locus_tag=SFV_2238 NC_008258.1 Protein Homology CDS 2271435 2272133 . + 0 ID=cds2444;Parent=gene2494;Dbxref=Genbank:WP_000658598.1;Name=WP_000658598.1;Note=activator of nucleoside metabolism;gbkey=CDS;product=Crp/Fnr family transcriptional regulator;protein_id=WP_000658598.1;transl_table=11 NC_008258.1 RefSeq gene 2272204 2273454 . - . ID=gene2495;Name=SFV_RS12540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12540;old_locus_tag=SFV_2239 NC_008258.1 Protein Homology CDS 2272204 2273454 . - 0 ID=cds2445;Parent=gene2495;Dbxref=Genbank:WP_005105611.1;Name=WP_005105611.1;gbkey=CDS;product=nucleoside permease;protein_id=WP_005105611.1;transl_table=11 NC_008258.1 RefSeq gene 2273548 2274486 . - . ID=gene2496;Name=SFV_RS12545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12545;old_locus_tag=SFV_2240 NC_008258.1 Protein Homology CDS 2273548 2274486 . - 0 ID=cds2446;Parent=gene2496;Dbxref=Genbank:WP_001292479.1;Name=WP_001292479.1;gbkey=CDS;product=pseudouridine-5'-phosphate glycosidase;protein_id=WP_001292479.1;transl_table=11 NC_008258.1 RefSeq gene 2274474 2275415 . - . ID=gene2497;Name=SFV_RS12550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12550;old_locus_tag=SFV_2241 NC_008258.1 Protein Homology CDS 2274474 2275415 . - 0 ID=cds2447;Parent=gene2497;Dbxref=Genbank:WP_001208135.1;Name=WP_001208135.1;gbkey=CDS;product=pseudouridine kinase;protein_id=WP_001208135.1;transl_table=11 NC_008258.1 RefSeq gene 2275839 2277530 . - . ID=gene2498;Name=SFV_RS12555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12555;old_locus_tag=SFV_2242 NC_008258.1 Protein Homology CDS 2275839 2277530 . - 0 ID=cds2448;Parent=gene2498;Dbxref=Genbank:WP_000854467.1;Name=WP_000854467.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS fructose transporter subunit IIBC;protein_id=WP_000854467.1;transl_table=11 NC_008258.1 RefSeq gene 2277547 2278485 . - . ID=gene2499;Name=fruK;gbkey=Gene;gene=fruK;gene_biotype=protein_coding;locus_tag=SFV_RS12560;old_locus_tag=SFV_2243 NC_008258.1 Protein Homology CDS 2277547 2278485 . - 0 ID=cds2449;Parent=gene2499;Dbxref=Genbank:WP_000091263.1;Name=WP_000091263.1;Note=converts fructose-1-phosphate and ATP to fructose-1%2C6-bisphosphate and ADP%3B highly specific for fructose-1-phopshate%3B similar to PfkB%3B forms homodimers;gbkey=CDS;gene=fruK;product=1-phosphofructokinase;protein_id=WP_000091263.1;transl_table=11 NC_008258.1 RefSeq gene 2278485 2279615 . - . ID=gene2500;Name=SFV_RS12565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12565;old_locus_tag=SFV_2244 NC_008258.1 Protein Homology CDS 2278485 2279615 . - 0 ID=cds2450;Parent=gene2500;Dbxref=Genbank:WP_000487263.1;Name=WP_000487263.1;Note=phosphoenolpyruvate (PEP)-dependent%2C sugar transporting phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIA is phosphorylated by phospho-HPr which then transfers the phosphoryl group to the IIB component;gbkey=CDS;product=PTS fructose transporter subunit IIA;protein_id=WP_000487263.1;transl_table=11 NC_008258.1 RefSeq gene 2279983 2281161 . + . ID=gene2501;Name=SFV_RS12570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12570;old_locus_tag=SFV_2245 NC_008258.1 Protein Homology CDS 2279983 2281161 . + 0 ID=cds2451;Parent=gene2501;Dbxref=Genbank:WP_000551955.1;Name=WP_000551955.1;gbkey=CDS;product=sugar transporter;protein_id=WP_000551955.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2281133 2281912 . + . ID=id411;gbkey=repeat_region NC_008258.1 RefSeq region 2281140 2281907 . - . ID=id412;gbkey=mobile_element NC_008258.1 RefSeq gene 2281155 2281658 . - . ID=gene2502;Name=SFV_RS12575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12575 NC_008258.1 Protein Homology CDS 2281155 2281658 . - 0 ID=cds2452;Parent=gene2502;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 2281937 2282191 . - . ID=gene2503;Name=SFV_RS12580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12580 NC_008258.1 Protein Homology CDS 2281937 2282191 . - 0 ID=cds2453;Parent=gene2503;Dbxref=Genbank:WP_000389030.1;Name=WP_000389030.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000389030.1;transl_table=11 NC_008258.1 RefSeq gene 2282346 2282918 . + . ID=gene2504;Name=SFV_RS12585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12585 NC_008258.1 Protein Homology CDS 2282346 2282918 . + 0 ID=cds2454;Parent=gene2504;Dbxref=Genbank:WP_001136824.1;Name=WP_001136824.1;Note=Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro%2C suggesting its involvement in the formation of the first peptide bond of a protein;gbkey=CDS;product=elongation factor P-like protein;protein_id=WP_001136824.1;transl_table=11 NC_008258.1 RefSeq gene 2283141 2284607 . + . ID=gene2505;Name=SFV_RS12590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12590;old_locus_tag=SFV_2250 NC_008258.1 Protein Homology CDS 2283141 2284607 . + 0 ID=cds2455;Parent=gene2505;Dbxref=Genbank:WP_000848227.1;Name=WP_000848227.1;gbkey=CDS;product=D-mannonate oxidoreductase;protein_id=WP_000848227.1;transl_table=11 NC_008258.1 RefSeq gene 2284725 2285711 . + . ID=gene2506;Name=SFV_RS12595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12595;old_locus_tag=SFV_2251 NC_008258.1 Protein Homology CDS 2284725 2285711 . + 0 ID=cds2456;Parent=gene2506;Dbxref=Genbank:WP_000198825.1;Name=WP_000198825.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000198825.1;transl_table=11 NC_008258.1 RefSeq gene 2285750 2286463 . + . ID=gene2507;Name=SFV_RS12600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12600;old_locus_tag=SFV_2252 NC_008258.1 Protein Homology CDS 2285750 2286463 . + 0 ID=cds2457;Parent=gene2507;Dbxref=Genbank:WP_005063524.1;Name=WP_005063524.1;gbkey=CDS;product=membrane protein;protein_id=WP_005063524.1;transl_table=11 NC_008258.1 RefSeq gene 2286875 2287441 . + . ID=gene2508;Name=spr;gbkey=Gene;gene=spr;gene_biotype=protein_coding;gene_synonym=yeiV;locus_tag=SFV_RS12605;old_locus_tag=SFV_2253 NC_008258.1 Protein Homology CDS 2286875 2287441 . + 0 ID=cds2458;Parent=gene2508;Dbxref=Genbank:WP_000241011.1;Name=WP_000241011.1;Note=mutational suppressor of prc thermosensitivity;gbkey=CDS;gene=spr;product=murein DD-endopeptidase MepS/Murein LD-carboxypeptidase;protein_id=WP_000241011.1;transl_table=11 NC_008258.1 RefSeq gene 2287622 2289178 . + . ID=gene2509;Name=SFV_RS12610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12610;old_locus_tag=SFV_2254 NC_008258.1 Protein Homology CDS 2287622 2289178 . + 0 ID=cds2459;Parent=gene2509;Dbxref=Genbank:WP_000470574.1;Name=WP_000470574.1;Note=involved in resistance to the phages N4 and lambda;gbkey=CDS;product=phage resistance protein;protein_id=WP_000470574.1;transl_table=11 NC_008258.1 RefSeq gene 2289260 2291074 . + . ID=gene2510;Name=SFV_RS12615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12615;old_locus_tag=SFV_2255 NC_008258.1 Protein Homology CDS 2289260 2291074 . + 0 ID=cds2460;Parent=gene2510;Dbxref=Genbank:WP_005105615.1;Name=WP_005105615.1;Note=with YejBEF is involved in resistance to microcin C;gbkey=CDS;product=peptide ABC transporter substrate-binding protein;protein_id=WP_005105615.1;transl_table=11 NC_008258.1 RefSeq gene 2291075 2292169 . + . ID=gene2511;Name=SFV_RS12620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12620;old_locus_tag=SFV_2256 NC_008258.1 Protein Homology CDS 2291075 2292169 . + 0 ID=cds2461;Parent=gene2511;Dbxref=Genbank:WP_000501600.1;Name=WP_000501600.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=microcin C ABC transporter permease YejB;protein_id=WP_000501600.1;transl_table=11 NC_008258.1 RefSeq gene 2292169 2293194 . + . ID=gene2512;Name=SFV_RS12625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12625;old_locus_tag=SFV_2257 NC_008258.1 Protein Homology CDS 2292169 2293194 . + 0 ID=cds2462;Parent=gene2512;Dbxref=Genbank:WP_000088916.1;Name=WP_000088916.1;Note=part of the microcin C transport system;gbkey=CDS;product=microcin C ABC transporter permease;protein_id=WP_000088916.1;transl_table=11 NC_008258.1 RefSeq gene 2293196 2294785 . + . ID=gene2513;Name=SFV_RS12630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12630;old_locus_tag=SFV_2258 NC_008258.1 Protein Homology CDS 2293196 2294785 . + 0 ID=cds2463;Parent=gene2513;Dbxref=Genbank:WP_000194906.1;Name=WP_000194906.1;Note=with YejAEF is involved in resistance to microcin C;gbkey=CDS;product=microcin C ABC transporter ATP-binding protein YejF;protein_id=WP_000194906.1;transl_table=11 NC_008258.1 RefSeq gene 2294789 2295133 . - . ID=gene2514;Name=SFV_RS12635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12635;old_locus_tag=SFV_2259 NC_008258.1 Protein Homology CDS 2294789 2295133 . - 0 ID=cds2464;Parent=gene2514;Dbxref=Genbank:WP_000202798.1;Name=WP_000202798.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000202798.1;transl_table=11 NC_008258.1 RefSeq gene 2295466 2296656 . - . ID=gene2515;Name=SFV_RS12640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12640;old_locus_tag=SFV_2260 NC_008258.1 Protein Homology CDS 2295466 2296656 . - 0 ID=cds2465;Parent=gene2515;Dbxref=Genbank:WP_000213403.1;Name=WP_000213403.1;Note=Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance;gbkey=CDS;product=Bcr/CflA family drug resistance efflux transporter;protein_id=WP_000213403.1;transl_table=11 NC_008258.1 RefSeq gene 2296684 2297379 . - . ID=gene2516;Name=SFV_RS12645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12645;old_locus_tag=SFV_2261 NC_008258.1 Protein Homology CDS 2296684 2297379 . - 0 ID=cds2466;Parent=gene2516;Dbxref=Genbank:WP_001234850.1;Name=WP_001234850.1;Note=catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA;gbkey=CDS;product=ribosomal small subunit pseudouridine synthase A;protein_id=WP_001234850.1;transl_table=11 NC_008258.1 RefSeq gene 2297529 2299289 . + . ID=gene2517;Name=SFV_RS12650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12650;old_locus_tag=SFV_2262 NC_008258.1 Protein Homology CDS 2297529 2299289 . + 0 ID=cds2467;Parent=gene2517;Dbxref=Genbank:WP_000578079.1;Name=WP_000578079.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000578079.1;transl_table=11 NC_008258.1 RefSeq gene 2299414 2299698 . + . ID=gene2518;Name=SFV_RS12655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12655;old_locus_tag=SFV_2263 NC_008258.1 Protein Homology CDS 2299414 2299698 . + 0 ID=cds2468;Parent=gene2518;Dbxref=Genbank:WP_000494183.1;Name=WP_000494183.1;gbkey=CDS;product=50S ribosomal protein L25;protein_id=WP_000494183.1;transl_table=11 NC_008258.1 RefSeq gene 2299837 2300844 . - . ID=gene2519;Name=SFV_RS12660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12660;old_locus_tag=SFV_2264 NC_008258.1 Protein Homology CDS 2299837 2300844 . - 0 ID=cds2469;Parent=gene2519;Dbxref=Genbank:WP_000050789.1;Name=WP_000050789.1;gbkey=CDS;product=nucleoid-associated protein;protein_id=WP_000050789.1;transl_table=11 NC_008258.1 RefSeq gene 2301026 2301253 . + . ID=gene2520;Name=SFV_RS12665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12665;old_locus_tag=SFV_2265 NC_008258.1 Protein Homology CDS 2301026 2301253 . + 0 ID=cds2470;Parent=gene2520;Dbxref=Genbank:WP_001135673.1;Name=WP_001135673.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001135673.1;transl_table=11 NC_008258.1 RefSeq gene 2301273 2303033 . + . ID=gene2521;Name=SFV_RS12670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12670;old_locus_tag=SFV_2266 NC_008258.1 Protein Homology CDS 2301273 2303033 . + 0 ID=cds2471;Parent=gene2521;Dbxref=Genbank:WP_000256187.1;Name=WP_000256187.1;gbkey=CDS;product=membrane protein;protein_id=WP_000256187.1;transl_table=11 NC_008258.1 RefSeq gene 2303108 2303184 . + . ID=gene2522;Name=SFV_RS12675;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS12675;old_locus_tag=SFV_2267 NC_008258.1 tRNAscan-SE tRNA 2303108 2303184 . + . ID=rna50;Parent=gene2522;anticodon=(pos:2303142..2303144);gbkey=tRNA;product=tRNA-Pro NC_008258.1 tRNAscan-SE exon 2303108 2303184 . + . ID=id413;Parent=rna50;anticodon=(pos:2303142..2303144);gbkey=tRNA;product=tRNA-Pro NC_008258.1 RefSeq gene 2303287 2305878 . - . ID=gene2523;Name=SFV_RS12680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12680;old_locus_tag=SFV_2268 NC_008258.1 Protein Homology CDS 2303287 2305878 . - 0 ID=cds2472;Parent=gene2523;Dbxref=Genbank:WP_011587251.1;Name=WP_011587251.1;gbkey=CDS;product=membrane protein;protein_id=WP_011587251.1;transl_table=11 NC_008258.1 RefSeq gene 2305909 2306166 . - . ID=gene2524;Name=SFV_RS12685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12685 NC_008258.1 Protein Homology CDS 2305909 2306166 . - 0 ID=cds2473;Parent=gene2524;Dbxref=Genbank:WP_001303596.1;Name=WP_001303596.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303596.1;transl_table=11 NC_008258.1 RefSeq gene 2306198 2306845 . + . ID=gene2525;Name=SFV_RS12690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12690;old_locus_tag=SFV_2269 NC_008258.1 Protein Homology CDS 2306198 2306845 . + 0 ID=cds2474;Parent=gene2525;Dbxref=Genbank:WP_005046798.1;Name=WP_005046798.1;Note=nitrate/nitrite response regulator NarP%3B NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems%3B represses expression of other anaerobic genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005046798.1;transl_table=11 NC_008258.1 RefSeq gene 2307056 2308108 . - . ID=gene2526;Name=SFV_RS12695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12695;old_locus_tag=SFV_2270 NC_008258.1 Protein Homology CDS 2307056 2308108 . - 0 ID=cds2475;Parent=gene2526;Dbxref=Genbank:WP_001211575.1;Name=WP_001211575.1;Note=cytochrome c-type biogenesis protein%3B involved in the attachment of heme to cytochrome c;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmH;protein_id=WP_001211575.1;transl_table=11 NC_008258.1 RefSeq gene 2308105 2308662 . - . ID=gene2527;Name=SFV_RS12700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12700;old_locus_tag=SFV_2271 NC_008258.1 Protein Homology CDS 2308105 2308662 . - 0 ID=cds2476;Parent=gene2527;Dbxref=Genbank:WP_000824439.1;Name=WP_000824439.1;Note=cytochrome c-type biogenesis thioredoxin%3B involved in the reduction of disulfide bonds to allow heme bonding;gbkey=CDS;product=thiol:disulfide interchange protein DsbE;protein_id=WP_000824439.1;transl_table=11 NC_008258.1 RefSeq gene 2308659 2310602 . - . ID=gene2528;Name=SFV_RS12705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12705;old_locus_tag=SFV_2272 NC_008258.1 Protein Homology CDS 2308659 2310602 . - 0 ID=cds2477;Parent=gene2528;Dbxref=Genbank:WP_000982459.1;Name=WP_000982459.1;Note=cytochrome c-type biogenesis protein%3B required for the transfer of heme to apocytochrome c;gbkey=CDS;product=heme lyase subunit CcmF;protein_id=WP_000982459.1;transl_table=11 NC_008258.1 RefSeq gene 2310599 2311078 . - . ID=gene2529;Name=SFV_RS12710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12710;old_locus_tag=SFV_2273 NC_008258.1 Protein Homology CDS 2310599 2311078 . - 0 ID=cds2478;Parent=gene2529;Dbxref=Genbank:WP_001026418.1;Name=WP_001026418.1;Note=CycJ%3B periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes%3B requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome%3B part of the cytochrome c maturation system%3B periplasmic protein anchored to the inner membrane;gbkey=CDS;product=cytochrome c-type biogenesis protein CcmE;protein_id=WP_001026418.1;transl_table=11 NC_008258.1 RefSeq gene 2311075 2311284 . - . ID=gene2530;Name=SFV_RS12715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12715;old_locus_tag=SFV_2274 NC_008258.1 Protein Homology CDS 2311075 2311284 . - 0 ID=cds2479;Parent=gene2530;Dbxref=Genbank:WP_000186540.1;Name=WP_000186540.1;Note=is invovled in heme transfer during cytochrome c biogenesis%3B acts to stabilize CcmC and CcmE;gbkey=CDS;product=heme exporter protein D;protein_id=WP_000186540.1;transl_table=11 NC_008258.1 RefSeq gene 2311281 2312018 . - . ID=gene2531;Name=SFV_RS12720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12720;old_locus_tag=SFV_2275 NC_008258.1 Protein Homology CDS 2311281 2312018 . - 0 ID=cds2480;Parent=gene2531;Dbxref=Genbank:WP_001295447.1;Name=WP_001295447.1;Note=with CcmABDE is involved in the transport of protoheme IX%3B CcmC is required for heme transfer to CcmE;gbkey=CDS;product=heme exporter protein C;protein_id=WP_001295447.1;transl_table=11 NC_008258.1 RefSeq gene 2312060 2312719 . - . ID=gene2532;Name=SFV_RS12725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12725;old_locus_tag=SFV_2276 NC_008258.1 Protein Homology CDS 2312060 2312719 . - 0 ID=cds2481;Parent=gene2532;Dbxref=Genbank:WP_000498849.1;Name=WP_000498849.1;Note=with CcmABCE is involved in the transport of protoheme IX%3B CcmB is required for the release of holoCcmE from CcmC;gbkey=CDS;product=heme ABC transporter permease;protein_id=WP_000498849.1;transl_table=11 NC_008258.1 RefSeq gene 2312719 2313336 . - . ID=gene2533;Name=SFV_RS12730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12730;old_locus_tag=SFV_2277 NC_008258.1 Protein Homology CDS 2312719 2313336 . - 0 ID=cds2482;Parent=gene2533;Dbxref=Genbank:WP_005046809.1;Name=WP_005046809.1;gbkey=CDS;product=cytochrome C biogenesis protein CcmA;protein_id=WP_005046809.1;transl_table=11 NC_008258.1 RefSeq gene 2313355 2313957 . - . ID=gene2534;Name=SFV_RS12735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12735;old_locus_tag=SFV_2278 NC_008258.1 Protein Homology CDS 2313355 2313957 . - 0 ID=cds2483;Parent=gene2534;Dbxref=Genbank:WP_000528367.1;Name=WP_000528367.1;Note=with NapABDFGH functions as a nitrate reductase%3B NapC functions as an electron shuttle between NapAB and NapGH or quinone;gbkey=CDS;product=cytochrome C protein NapC;protein_id=WP_000528367.1;transl_table=11 NC_008258.1 RefSeq gene 2313967 2314416 . - . ID=gene2535;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=SFV_RS12740;old_locus_tag=SFV_2279 NC_008258.1 Protein Homology CDS 2313967 2314416 . - 0 ID=cds2484;Parent=gene2535;Dbxref=Genbank:WP_000835174.1;Name=WP_000835174.1;Note=small subunit of periplasmic nitrate reductase%3B receives electrons from the membrane-bound NapC and passes them to NapA;gbkey=CDS;gene=napB;product=periplasmic nitrate reductase electron transfer subunit;protein_id=WP_000835174.1;transl_table=11 NC_008258.1 RefSeq gene 2314413 2315276 . - . ID=gene2536;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=SFV_RS12745;old_locus_tag=SFV_2280 NC_008258.1 Protein Homology CDS 2314413 2315276 . - 0 ID=cds2485;Parent=gene2536;Dbxref=Genbank:WP_000013513.1;Name=WP_000013513.1;Note=part of NapHG quinol dehydrogenase%3B couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA;gbkey=CDS;gene=napH;product=ferredoxin-type protein NapH;protein_id=WP_000013513.1;transl_table=11 NC_008258.1 RefSeq gene 2315263 2315958 . - . ID=gene2537;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=SFV_RS12750;old_locus_tag=SFV_2281 NC_008258.1 Protein Homology CDS 2315263 2315958 . - 0 ID=cds2486;Parent=gene2537;Dbxref=Genbank:WP_000091291.1;Name=WP_000091291.1;Note=part of NapHG quinol dehydrogenase%3B couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA%3B secreted by twin arginine translocation pathway;gbkey=CDS;gene=napG;product=ferredoxin-type protein NapG;protein_id=WP_000091291.1;transl_table=11 NC_008258.1 RefSeq gene 2315965 2318451 . - . ID=gene2538;Name=SFV_RS12755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12755;old_locus_tag=SFV_2282 NC_008258.1 Protein Homology CDS 2315965 2318451 . - 0 ID=cds2487;Parent=gene2538;Dbxref=Genbank:WP_000778073.1;Name=WP_000778073.1;Note=periplasmic%3B catalytic subunit%3B with NapBC catalyzes the reduction of nitrate to nitrite%3B NapAB receives electrons from NapC;gbkey=CDS;product=periplasmic nitrate reductase;protein_id=WP_000778073.1;transl_table=11 NC_008258.1 RefSeq gene 2318448 2318711 . - . ID=gene2539;Name=SFV_RS12760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12760;old_locus_tag=SFV_2283 NC_008258.1 Protein Homology CDS 2318448 2318711 . - 0 ID=cds2488;Parent=gene2539;Dbxref=Genbank:WP_000557385.1;Name=WP_000557385.1;gbkey=CDS;product=nitrate reductase;protein_id=WP_000557385.1;transl_table=11 NC_008258.1 RefSeq gene 2318701 2319195 . - . ID=gene2540;Name=SFV_RS12765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12765 NC_008258.1 Protein Homology CDS 2318701 2319195 . - 0 ID=cds2489;Parent=gene2540;Dbxref=Genbank:WP_000686713.1;Name=WP_000686713.1;Note=Predicted role in electron transfer to the periplasmic nitrate reductase protein NapA.;gbkey=CDS;product=ferredoxin;protein_id=WP_000686713.1;transl_table=11 NC_008258.1 RefSeq gene 2319304 2319468 . + . ID=gene2541;Name=SFV_RS12770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12770 NC_008258.1 Protein Homology CDS 2319304 2319468 . + 0 ID=cds2490;Parent=gene2541;Dbxref=Genbank:WP_001296837.1;Name=WP_001296837.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296837.1;transl_table=11 NC_008258.1 RefSeq gene 2319603 2320091 . + . ID=gene2542;Name=SFV_RS12775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12775;old_locus_tag=SFV_2284 NC_008258.1 Protein Homology CDS 2319603 2320091 . + 0 ID=cds2491;Parent=gene2542;Dbxref=Genbank:WP_005046814.1;Name=WP_005046814.1;Note=serine protease inhibitor%2C inhibits trypsin and other proteases;gbkey=CDS;product=ecotin;protein_id=WP_005046814.1;transl_table=11 NC_008258.1 RefSeq gene 2320241 2321865 . - . ID=gene2543;Name=SFV_RS12780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12780;pseudo=true NC_008258.1 Protein Homology CDS 2320241 2321865 . - 0 ID=cds2492;Parent=gene2543;exception=annotated by transcript or proteomic data;gbkey=CDS;product=malate:quinone oxidoreductase;pseudo=true;transl_except=(pos:complement(2321716..2321718)%2Caa:Other),(pos:complement(2321638..2321640)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2322083 2323726 . - . ID=gene2544;Name=SFV_RS12790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12790;old_locus_tag=SFV_2286 NC_008258.1 Protein Homology CDS 2322083 2323726 . - 0 ID=cds2493;Parent=gene2544;Dbxref=Genbank:WP_000422171.1;Name=WP_000422171.1;Note=efflux pump for the antibacterial peptide microcin J25;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_000422171.1;transl_table=11 NC_008258.1 RefSeq gene 2323802 2324452 . - . ID=gene2545;Name=SFV_RS12795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12795;old_locus_tag=SFV_2287 NC_008258.1 Protein Homology CDS 2323802 2324452 . - 0 ID=cds2494;Parent=gene2545;Dbxref=Genbank:WP_000884947.1;Name=WP_000884947.1;gbkey=CDS;product=alpha-ketoglutarate-dependent dioxygenase;protein_id=WP_000884947.1;transl_table=11 NC_008258.1 RefSeq gene 2324452 2325516 . - . ID=gene2546;Name=SFV_RS12800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12800;old_locus_tag=SFV_2288 NC_008258.1 Protein Homology CDS 2324452 2325516 . - 0 ID=cds2495;Parent=gene2546;Dbxref=Genbank:WP_000786374.1;Name=WP_000786374.1;Note=regulates genes involved in the repair of alkylated DNA%3B repairs DNA containing 6-O-methylguanine;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000786374.1;transl_table=11 NC_008258.1 RefSeq gene 2325590 2326645 . - . ID=gene2547;Name=SFV_RS12805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12805;old_locus_tag=SFV_2289 NC_008258.1 Protein Homology CDS 2325590 2326645 . - 0 ID=cds2496;Parent=gene2547;Dbxref=Genbank:WP_000406131.1;Name=WP_000406131.1;Note=catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine%3B involved in the maintenance and/or assembly of sulfur clusters%3B periplasmic lipoporotein anchored to the inner membrane%3B part of the thiamine pyrophosphate biosynthesis pathway;gbkey=CDS;product=thiamine biosynthesis lipoprotein ApbE;protein_id=WP_000406131.1;transl_table=11 NC_008258.1 RefSeq gene 2326757 2327878 . - . ID=gene2548;Name=SFV_RS12810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12810;old_locus_tag=SFV_2290 NC_008258.1 Protein Homology CDS 2326757 2327878 . - 0 ID=cds2497;Parent=gene2548;Dbxref=Genbank:WP_000865562.1;Name=WP_000865562.1;gbkey=CDS;product=porin;protein_id=WP_000865562.1;transl_table=11 NC_008258.1 RefSeq gene 2328137 2328226 . - . ID=gene2549;Name=SFV_RS12815;end_range=2328226,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12815;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2328137 2328226 . - 0 ID=cds2498;Parent=gene2549;end_range=2328226,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2328616 2331288 . + . ID=gene2550;Name=SFV_RS12820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12820;old_locus_tag=SFV_2291 NC_008258.1 Protein Homology CDS 2328616 2331288 . + 0 ID=cds2499;Parent=gene2550;Dbxref=Genbank:WP_001249092.1;Name=WP_001249092.1;gbkey=CDS;product=phosphotransfer intermediate protein in two-component regulatory system with RcsBC;protein_id=WP_001249092.1;transl_table=11 NC_008258.1 RefSeq gene 2331305 2331955 . + . ID=gene2551;Name=SFV_RS12825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12825;old_locus_tag=SFV_2292 NC_008258.1 Protein Homology CDS 2331305 2331955 . + 0 ID=cds2500;Parent=gene2551;Dbxref=Genbank:WP_001061917.1;Name=WP_001061917.1;Note=two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division%3B probably phosphorylated by RcsC or RcsF;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001061917.1;transl_table=11 NC_008258.1 RefSeq gene 2332155 2335004 . - . ID=gene2552;Name=SFV_RS12830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12830;old_locus_tag=SFV_2293 NC_008258.1 Protein Homology CDS 2332155 2335004 . - 0 ID=cds2501;Parent=gene2552;Dbxref=Genbank:WP_000875995.1;Name=WP_000875995.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_000875995.1;transl_table=11 NC_008258.1 RefSeq gene 2335279 2336055 . - . ID=gene2553;Name=SFV_RS12835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12835;old_locus_tag=SFV_2294 NC_008258.1 Protein Homology CDS 2335279 2336055 . - 0 ID=cds2502;Parent=gene2553;Dbxref=Genbank:WP_001225855.1;Name=WP_001225855.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001225855.1;transl_table=11 NC_008258.1 RefSeq gene 2336060 2337709 . - . ID=gene2554;Name=SFV_RS12840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12840;old_locus_tag=SFV_2295 NC_008258.1 Protein Homology CDS 2336060 2337709 . - 0 ID=cds2503;Parent=gene2554;Dbxref=Genbank:WP_001104543.1;Name=WP_001104543.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001104543.1;transl_table=11 NC_008258.1 RefSeq gene 2337710 2338225 . - . ID=gene2555;Name=SFV_RS12845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12845 NC_008258.1 GeneMarkS+ CDS 2337710 2338225 . - 0 ID=cds2504;Parent=gene2555;Dbxref=Genbank:WP_005046832.1;Name=WP_005046832.1;gbkey=CDS;product=alpha-2-macroglobulin;protein_id=WP_005046832.1;transl_table=11 NC_008258.1 RefSeq gene 2338273 2340059 . - . ID=gene2556;Name=SFV_RS12850;end_range=2340059,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12850;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2338273 2340059 . - 0 ID=cds2505;Parent=gene2556;end_range=2340059,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2339973 2341224 . + . ID=id414;gbkey=repeat_region NC_008258.1 RefSeq region 2339975 2341223 . - . ID=id415;gbkey=mobile_element NC_008258.1 RefSeq gene 2340849 2341151 . - . ID=gene2557;Name=SFV_RS12855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12855;old_locus_tag=SFV_2297 NC_008258.1 Protein Homology CDS 2340849 2341151 . - 0 ID=cds2506;Parent=gene2557;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 2341227 2343476 . - . ID=gene2558;Name=SFV_RS12860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12860;partial=true;pseudo=true;start_range=.,2341227 NC_008258.1 Protein Homology CDS 2341227 2343476 . - 0 ID=cds2507;Parent=gene2558;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2341227;transl_table=11 NC_008258.1 RefSeq gene 2343500 2344123 . - . ID=gene2559;Name=SFV_RS12865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12865;old_locus_tag=SFV_2299 NC_008258.1 Protein Homology CDS 2343500 2344123 . - 0 ID=cds2508;Parent=gene2559;Dbxref=Genbank:WP_001215763.1;Name=WP_001215763.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001215763.1;transl_table=11 NC_008258.1 RefSeq gene 2344120 2345808 . - . ID=gene2560;Name=SFV_RS12870;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12870;pseudo=true NC_008258.1 Protein Homology CDS 2344120 2345808 . - 0 ID=cds2509;Parent=gene2560;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2345302..2345304)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2345957 2348584 . - . ID=gene2561;Name=SFV_RS12875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12875;old_locus_tag=SFV_2302 NC_008258.1 Protein Homology CDS 2345957 2348584 . - 0 ID=cds2510;Parent=gene2561;Dbxref=Genbank:WP_001281238.1;Name=WP_001281238.1;gbkey=CDS;product=DNA gyrase subunit A;protein_id=WP_001281238.1;transl_table=11 NC_008258.1 RefSeq gene 2348731 2349453 . + . ID=gene2562;Name=SFV_RS12880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12880;old_locus_tag=SFV_2303 NC_008258.1 Protein Homology CDS 2348731 2349453 . + 0 ID=cds2511;Parent=gene2562;Dbxref=Genbank:WP_000990752.1;Name=WP_000990752.1;Note=Involved in ubiquinone biosynthesis;gbkey=CDS;product=ubiquinone biosynthesis O-methyltransferase;protein_id=WP_000990752.1;transl_table=11 NC_008258.1 RefSeq gene 2349581 2353186 . - . ID=gene2563;Name=SFV_RS12885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12885;pseudo=true NC_008258.1 Protein Homology CDS 2349581 2353186 . - 0 ID=cds2512;Parent=gene2563;gbkey=CDS;product=adhesin;pseudo=true;transl_except=(pos:complement(2351525..2351527)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 2353157 2354492 . + . ID=id416;gbkey=repeat_region NC_008258.1 RefSeq region 2353159 2354489 . + . ID=id417;gbkey=mobile_element NC_008258.1 RefSeq gene 2353250 2353615 . + . ID=gene2564;Name=SFV_RS12890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12890;old_locus_tag=SFV_2304 NC_008258.1 Protein Homology CDS 2353250 2353615 . + 0 ID=cds2513;Parent=gene2564;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 2353573 2354478 . + . ID=gene2565;Name=SFV_RS12895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12895;old_locus_tag=SFV_2305 NC_008258.1 Protein Homology CDS 2353573 2354478 . + 0 ID=cds2514;Parent=gene2565;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 2355141 2355284 . + . ID=gene2566;Name=SFV_RS12900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12900 NC_008258.1 Protein Homology CDS 2355141 2355284 . + 0 ID=cds2515;Parent=gene2566;Dbxref=Genbank:WP_032083391.1;Name=WP_032083391.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032083391.1;transl_table=11 NC_008258.1 RefSeq gene 2355365 2357650 . + . ID=gene2567;Name=SFV_RS12905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12905;old_locus_tag=SFV_2307 NC_008258.1 Protein Homology CDS 2355365 2357650 . + 0 ID=cds2516;Parent=gene2567;Dbxref=Genbank:WP_001075181.1;Name=WP_001075181.1;Note=Catalyzes the rate-limiting step in dNTP synthesis;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_001075181.1;transl_table=11 NC_008258.1 RefSeq gene 2357884 2359014 . + . ID=gene2568;Name=SFV_RS12910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12910;old_locus_tag=SFV_2308 NC_008258.1 Protein Homology CDS 2357884 2359014 . + 0 ID=cds2517;Parent=gene2568;Dbxref=Genbank:WP_000332036.1;Name=WP_000332036.1;Note=B2 or R2 protein%3B type 1a enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdA;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_000332036.1;transl_table=11 NC_008258.1 RefSeq gene 2359014 2359268 . + . ID=gene2569;Name=SFV_RS12915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12915;old_locus_tag=SFV_2309 NC_008258.1 Protein Homology CDS 2359014 2359268 . + 0 ID=cds2518;Parent=gene2569;Dbxref=Genbank:WP_000135039.1;Name=WP_000135039.1;Note=plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor%2C essential for nucleotide reduction catalyzed by ribonucleotide reductases;gbkey=CDS;product=(2Fe-2S) ferredoxin;protein_id=WP_000135039.1;transl_table=11 NC_008258.1 RefSeq gene 2359322 2359972 . - . ID=gene2570;Name=SFV_RS12920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12920;old_locus_tag=SFV_2310 NC_008258.1 Protein Homology CDS 2359322 2359972 . - 0 ID=cds2519;Parent=gene2570;Dbxref=Genbank:WP_000301054.1;Name=WP_000301054.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000301054.1;transl_table=11 NC_008258.1 RefSeq gene 2360187 2360393 . + . ID=gene2571;Name=SFV_RS12925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12925 NC_008258.1 Protein Homology CDS 2360187 2360393 . + 0 ID=cds2520;Parent=gene2571;Dbxref=Genbank:WP_001009396.1;Name=WP_001009396.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001009396.1;transl_table=11 NC_008258.1 RefSeq gene 2360435 2361511 . - . ID=gene2572;Name=glpQ;gbkey=Gene;gene=glpQ;gene_biotype=protein_coding;locus_tag=SFV_RS12930;old_locus_tag=SFV_2311 NC_008258.1 Protein Homology CDS 2360435 2361511 . - 0 ID=cds2521;Parent=gene2572;Dbxref=Genbank:WP_000768978.1;Name=WP_000768978.1;Note=hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols%3B periplasmic;gbkey=CDS;gene=glpQ;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000768978.1;transl_table=11 NC_008258.1 RefSeq gene 2361516 2362874 . - . ID=gene2573;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=protein_coding;locus_tag=SFV_RS12935;old_locus_tag=SFV_2312 NC_008258.1 Protein Homology CDS 2361516 2362874 . - 0 ID=cds2522;Parent=gene2573;Dbxref=Genbank:WP_000948751.1;Name=WP_000948751.1;Note=catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell;gbkey=CDS;gene=glpT;product=sn-glycerol-3-phosphate transporter;protein_id=WP_000948751.1;transl_table=11 NC_008258.1 RefSeq gene 2363147 2364775 . + . ID=gene2574;Name=glpA;gbkey=Gene;gene=glpA;gene_biotype=protein_coding;locus_tag=SFV_RS12940;old_locus_tag=SFV_2313 NC_008258.1 Protein Homology CDS 2363147 2364775 . + 0 ID=cds2523;Parent=gene2574;Dbxref=Genbank:WP_000857257.1;Name=WP_000857257.1;Note=anaerobic%2C catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor;gbkey=CDS;gene=glpA;product=anaerobic glycerol-3-phosphate dehydrogenase subunit A;protein_id=WP_000857257.1;transl_table=11 NC_008258.1 RefSeq gene 2364765 2366024 . + . ID=gene2575;Name=SFV_RS12945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12945;old_locus_tag=SFV_2314 NC_008258.1 Protein Homology CDS 2364765 2366024 . + 0 ID=cds2524;Parent=gene2575;Dbxref=Genbank:WP_001209896.1;Name=WP_001209896.1;Note=sn-glycerol-3-phosphate dehydrogenase (anaerobic)%3B catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate%3B part of GlpABC complex%3B presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters;gbkey=CDS;product=anaerobic glycerol-3-phosphate dehydrogenase subunit B;protein_id=WP_001209896.1;transl_table=11 NC_008258.1 RefSeq gene 2366021 2367211 . + . ID=gene2576;Name=glpC;gbkey=Gene;gene=glpC;gene_biotype=protein_coding;locus_tag=SFV_RS12950;old_locus_tag=SFV_2315 NC_008258.1 Protein Homology CDS 2366021 2367211 . + 0 ID=cds2525;Parent=gene2576;Dbxref=Genbank:WP_001000364.1;Name=WP_001000364.1;Note=anaerobic%3B with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate;gbkey=CDS;gene=glpC;product=sn-glycerol-3-phosphate dehydrogenase subunit C;protein_id=WP_001000364.1;transl_table=11 NC_008258.1 RefSeq gene 2367404 2368354 . + . ID=gene2577;Name=SFV_RS12955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12955;old_locus_tag=SFV_2316 NC_008258.1 Protein Homology CDS 2367404 2368354 . + 0 ID=cds2526;Parent=gene2577;Dbxref=Genbank:WP_000140529.1;Name=WP_000140529.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000140529.1;transl_table=11 NC_008258.1 RefSeq gene 2368395 2368784 . - . ID=gene2578;Name=SFV_RS12960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12960;old_locus_tag=SFV_2317 NC_008258.1 Protein Homology CDS 2368395 2368784 . - 0 ID=cds2527;Parent=gene2578;Dbxref=Genbank:WP_001323804.1;Name=WP_001323804.1;gbkey=CDS;product=aldolase;protein_id=WP_001323804.1;transl_table=11 NC_008258.1 RefSeq gene 2368920 2370122 . - . ID=gene2579;Name=SFV_RS12965;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS12965;pseudo=true NC_008258.1 Protein Homology CDS 2368920 2370122 . - 0 ID=cds2528;Parent=gene2579;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2369331..2369333)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2370209 2370751 . - . ID=gene2580;Name=SFV_RS12970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12970;old_locus_tag=SFV_2320 NC_008258.1 Protein Homology CDS 2370209 2370751 . - 0 ID=cds2529;Parent=gene2580;Dbxref=Genbank:WP_005046907.1;Name=WP_005046907.1;gbkey=CDS;product=membrane protein;protein_id=WP_005046907.1;transl_table=11 NC_008258.1 RefSeq gene 2371030 2371455 . + . ID=gene2581;Name=SFV_RS12975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12975;old_locus_tag=SFV_2321 NC_008258.1 Protein Homology CDS 2371030 2371455 . + 0 ID=cds2530;Parent=gene2581;Dbxref=Genbank:WP_001249889.1;Name=WP_001249889.1;Note=catalyzes the hydrolysis of nucleoside triphosphates;gbkey=CDS;product=nucleoside triphosphatase;protein_id=WP_001249889.1;transl_table=11 NC_008258.1 RefSeq gene 2371494 2372096 . - . ID=gene2582;Name=SFV_RS12980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12980;old_locus_tag=SFV_2322 NC_008258.1 Protein Homology CDS 2371494 2372096 . - 0 ID=cds2531;Parent=gene2582;Dbxref=Genbank:WP_024260288.1;Name=WP_024260288.1;Note=catalyzes the of heptose(II) of the outer membrane lipopolysaccharide core;gbkey=CDS;product=LPS core heptose(II)-phosphate phosphatase;protein_id=WP_024260288.1;transl_table=11 NC_008258.1 RefSeq gene 2372404 2373543 . + . ID=gene2583;Name=SFV_RS12985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12985;old_locus_tag=SFV_2323 NC_008258.1 Protein Homology CDS 2372404 2373543 . + 0 ID=cds2532;Parent=gene2583;Dbxref=Genbank:WP_001379974.1;Name=WP_001379974.1;Note=catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose;gbkey=CDS;product=UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase;protein_id=WP_001379974.1;transl_table=11 NC_008258.1 RefSeq gene 2373547 2374515 . + . ID=gene2584;Name=SFV_RS12990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12990;old_locus_tag=SFV_2324 NC_008258.1 Protein Homology CDS 2373547 2374515 . + 0 ID=cds2533;Parent=gene2584;Dbxref=Genbank:WP_000461664.1;Name=WP_000461664.1;Note=catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate;gbkey=CDS;product=undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase;protein_id=WP_000461664.1;transl_table=11 NC_008258.1 RefSeq gene 2374515 2376497 . + . ID=gene2585;Name=SFV_RS12995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS12995;old_locus_tag=SFV_2325 NC_008258.1 Protein Homology CDS 2374515 2376497 . + 0 ID=cds2534;Parent=gene2585;Dbxref=Genbank:WP_000860239.1;Name=WP_000860239.1;Note=Bifunctional polymyxin resistance arnA protein%3B catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose%3B active in certain mutant strains;gbkey=CDS;product=bifunctional polymyxin resistance protein ArnA;protein_id=WP_000860239.1;transl_table=11 NC_008258.1 RefSeq gene 2376494 2377384 . + . ID=gene2586;Name=SFV_RS13000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13000;old_locus_tag=SFV_2326 NC_008258.1 Protein Homology CDS 2376494 2377384 . + 0 ID=cds2535;Parent=gene2586;Dbxref=Genbank:WP_000169728.1;Name=WP_000169728.1;Note=catalyzes the formation of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol;gbkey=CDS;product=4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD;protein_id=WP_000169728.1;transl_table=11 NC_008258.1 RefSeq gene 2377384 2379036 . + . ID=gene2587;Name=arnT;gbkey=Gene;gene=arnT;gene_biotype=protein_coding;locus_tag=SFV_RS13005;old_locus_tag=SFV_2327 NC_008258.1 Protein Homology CDS 2377384 2379036 . + 0 ID=cds2536;Parent=gene2587;Dbxref=Genbank:WP_000844002.1;Name=WP_000844002.1;Note=catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A;gbkey=CDS;gene=arnT;product=undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase;protein_id=WP_000844002.1;transl_table=11 NC_008258.1 RefSeq gene 2379033 2379368 . + . ID=gene2588;Name=SFV_RS13010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13010;old_locus_tag=SFV_2328 NC_008258.1 Protein Homology CDS 2379033 2379368 . + 0 ID=cds2537;Parent=gene2588;Dbxref=Genbank:WP_000638022.1;Name=WP_000638022.1;Note=with ArnE is involved in transporting 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasmic face to the periplasmic face of the inner membrane;gbkey=CDS;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE;protein_id=WP_000638022.1;transl_table=11 NC_008258.1 RefSeq gene 2379368 2379754 . + . ID=gene2589;Name=SFV_RS13015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13015;old_locus_tag=SFV_2329 NC_008258.1 Protein Homology CDS 2379368 2379754 . + 0 ID=cds2538;Parent=gene2589;Dbxref=Genbank:WP_000523003.1;Name=WP_000523003.1;Note=with ArnE is responsible for the transport of 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the cytoplasm to the periplasm;gbkey=CDS;product=4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF;protein_id=WP_000523003.1;transl_table=11 NC_008258.1 RefSeq gene 2379748 2380020 . - . ID=gene2590;Name=SFV_RS13020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13020 NC_008258.1 Protein Homology CDS 2379748 2380020 . - 0 ID=cds2539;Parent=gene2590;Dbxref=Genbank:WP_011069449.1;Name=WP_011069449.1;Note=with BasR regulates genes involved in polymyxin resistance;gbkey=CDS;product=signal transduction protein PmrD;protein_id=WP_011069449.1;transl_table=11 NC_008258.1 RefSeq gene 2380125 2381480 . - . ID=gene2591;Name=SFV_RS13025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13025;old_locus_tag=SFV_2331 NC_008258.1 Protein Homology CDS 2380125 2381480 . - 0 ID=cds2540;Parent=gene2591;Dbxref=Genbank:WP_000577599.1;Name=WP_000577599.1;gbkey=CDS;product=O-succinylbenzoic acid--CoA ligase;protein_id=WP_000577599.1;transl_table=11 NC_008258.1 RefSeq gene 2381477 2382439 . - . ID=gene2592;Name=SFV_RS13030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13030;old_locus_tag=SFV_2332 NC_008258.1 Protein Homology CDS 2381477 2382439 . - 0 ID=cds2541;Parent=gene2592;Dbxref=Genbank:WP_001255582.1;Name=WP_001255582.1;Note=catalyzes the dehydration of 2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate;gbkey=CDS;product=O-succinylbenzoate synthase;protein_id=WP_001255582.1;transl_table=11 NC_008258.1 RefSeq gene 2382439 2383296 . - . ID=gene2593;Name=SFV_RS13035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13035;old_locus_tag=SFV_2333 NC_008258.1 Protein Homology CDS 2382439 2383296 . - 0 ID=cds2542;Parent=gene2593;Dbxref=Genbank:WP_000640007.1;Name=WP_000640007.1;Note=catalyzes the formation of 1%2C4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA;gbkey=CDS;product=dihydroxynaphthoic acid synthetase;protein_id=WP_000640007.1;transl_table=11 NC_008258.1 RefSeq gene 2383311 2384069 . - . ID=gene2594;Name=SFV_RS13040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13040;old_locus_tag=SFV_2334 NC_008258.1 Protein Homology CDS 2383311 2384069 . - 0 ID=cds2543;Parent=gene2594;Dbxref=Genbank:WP_000600480.1;Name=WP_000600480.1;Note=catalyzes the formation of (1 R%2C6 R)-2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate in menaquinone biosynthesis;gbkey=CDS;product=2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase;protein_id=WP_000600480.1;transl_table=11 NC_008258.1 RefSeq gene 2384066 2385736 . - . ID=gene2595;Name=SFV_RS13045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13045;old_locus_tag=SFV_2335 NC_008258.1 Protein Homology CDS 2384066 2385736 . - 0 ID=cds2544;Parent=gene2595;Dbxref=Genbank:WP_005046935.1;Name=WP_005046935.1;Note=SEPHCHC synthase%3B forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis;gbkey=CDS;product=2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase;protein_id=WP_005046935.1;transl_table=11 NC_008258.1 RefSeq gene 2385825 2387120 . - . ID=gene2596;Name=SFV_RS13050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13050;old_locus_tag=SFV_2336 NC_008258.1 Protein Homology CDS 2385825 2387120 . - 0 ID=cds2545;Parent=gene2596;Dbxref=Genbank:WP_001191397.1;Name=WP_001191397.1;gbkey=CDS;product=isochorismate synthase;protein_id=WP_001191397.1;transl_table=11 NC_008258.1 RefSeq gene 2387199 2387504 . - . ID=gene2597;Name=SFV_RS13055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13055;old_locus_tag=SFV_2337 NC_008258.1 Protein Homology CDS 2387199 2387504 . - 0 ID=cds2546;Parent=gene2597;Dbxref=Genbank:WP_000070619.1;Name=WP_000070619.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000070619.1;transl_table=11 NC_008258.1 RefSeq gene 2387559 2388020 . - . ID=gene2598;Name=SFV_RS13060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13060;old_locus_tag=SFV_2338 NC_008258.1 Protein Homology CDS 2387559 2388020 . - 0 ID=cds2547;Parent=gene2598;Dbxref=Genbank:WP_000574091.1;Name=WP_000574091.1;gbkey=CDS;product=protein ElaA;protein_id=WP_000574091.1;transl_table=11 NC_008258.1 RefSeq gene 2388085 2389002 . + . ID=gene2599;Name=SFV_RS13065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13065;old_locus_tag=SFV_2339 NC_008258.1 Protein Homology CDS 2388085 2389002 . + 0 ID=cds2548;Parent=gene2599;Dbxref=Genbank:WP_001300687.1;Name=WP_001300687.1;Note=RNase BN%3B member of metallo-beta-lactamase family%3B the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase%3B in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not%3B associates with two zinc ions;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300687.1;transl_table=11 NC_008258.1 RefSeq gene 2389193 2389381 . + . ID=gene2600;Name=SFV_RS13070;end_range=2389381,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13070;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2389193 2389381 . + 0 ID=cds2549;Parent=gene2600;end_range=2389381,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2389379 2390153 . + . ID=id418;gbkey=repeat_region NC_008258.1 RefSeq region 2389383 2390150 . + . ID=id419;gbkey=mobile_element NC_008258.1 RefSeq gene 2389632 2390135 . + . ID=gene2601;Name=SFV_RS13075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13075;old_locus_tag=SFV_2341 NC_008258.1 Protein Homology CDS 2389632 2390135 . + 0 ID=cds2550;Parent=gene2601;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 2390150 2390647 . + . ID=gene2602;Name=SFV_RS13080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13080;old_locus_tag=SFV_2342 NC_008258.1 Protein Homology CDS 2390150 2390647 . + 0 ID=cds2551;Parent=gene2602;Dbxref=Genbank:WP_024260289.1;Name=WP_024260289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260289.1;transl_table=11 NC_008258.1 RefSeq gene 2390714 2392171 . - . ID=gene2603;Name=SFV_RS13085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13085;old_locus_tag=SFV_2343 NC_008258.1 Protein Homology CDS 2390714 2392171 . - 0 ID=cds2552;Parent=gene2603;Dbxref=Genbank:WP_000156718.1;Name=WP_000156718.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit N;protein_id=WP_000156718.1;transl_table=11 NC_008258.1 RefSeq gene 2392178 2393707 . - . ID=gene2604;Name=SFV_RS13090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13090;old_locus_tag=SFV_2344 NC_008258.1 Protein Homology CDS 2392178 2393707 . - 0 ID=cds2553;Parent=gene2604;Dbxref=Genbank:WP_000926446.1;Name=WP_000926446.1;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit M;protein_id=WP_000926446.1;transl_table=11 NC_008258.1 RefSeq gene 2393871 2395712 . - . ID=gene2605;Name=SFV_RS13095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13095;old_locus_tag=SFV_2345 NC_008258.1 Protein Homology CDS 2393871 2395712 . - 0 ID=cds2554;Parent=gene2605;Dbxref=Genbank:WP_001056615.1;Name=WP_001056615.1;Note=Catalyzes the transfer of electrons from NADH to ubiquinone;gbkey=CDS;product=NADH:ubiquinone oxidoreductase subunit L;protein_id=WP_001056615.1;transl_table=11 NC_008258.1 RefSeq gene 2395709 2396011 . - . ID=gene2606;Name=SFV_RS13100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13100;old_locus_tag=SFV_2346 NC_008258.1 Protein Homology CDS 2395709 2396011 . - 0 ID=cds2555;Parent=gene2606;Dbxref=Genbank:WP_000612644.1;Name=WP_000612644.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit K;protein_id=WP_000612644.1;transl_table=11 NC_008258.1 RefSeq gene 2396008 2396562 . - . ID=gene2607;Name=SFV_RS13105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13105;old_locus_tag=SFV_2347 NC_008258.1 Protein Homology CDS 2396008 2396562 . - 0 ID=cds2556;Parent=gene2607;Dbxref=Genbank:WP_000393511.1;Name=WP_000393511.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit J;protein_id=WP_000393511.1;transl_table=11 NC_008258.1 RefSeq gene 2396574 2397116 . - . ID=gene2608;Name=SFV_RS13110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13110;old_locus_tag=SFV_2348 NC_008258.1 Protein Homology CDS 2396574 2397116 . - 0 ID=cds2557;Parent=gene2608;Dbxref=Genbank:WP_000172749.1;Name=WP_000172749.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit I;protein_id=WP_000172749.1;transl_table=11 NC_008258.1 RefSeq gene 2397131 2398108 . - . ID=gene2609;Name=SFV_RS13115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13115;old_locus_tag=SFV_2349 NC_008258.1 Protein Homology CDS 2397131 2398108 . - 0 ID=cds2558;Parent=gene2609;Dbxref=Genbank:WP_000118509.1;Name=WP_000118509.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit H;protein_id=WP_000118509.1;transl_table=11 NC_008258.1 RefSeq gene 2398105 2400831 . - . ID=gene2610;Name=SFV_RS13120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13120;old_locus_tag=SFV_2350 NC_008258.1 Protein Homology CDS 2398105 2400831 . - 0 ID=cds2559;Parent=gene2610;Dbxref=Genbank:WP_005069929.1;Name=WP_005069929.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit G;protein_id=WP_005069929.1;transl_table=11 NC_008258.1 RefSeq gene 2400884 2402221 . - . ID=gene2611;Name=SFV_RS13125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13125;old_locus_tag=SFV_2351 NC_008258.1 Protein Homology CDS 2400884 2402221 . - 0 ID=cds2560;Parent=gene2611;Dbxref=Genbank:WP_000789499.1;Name=WP_000789499.1;Note=part of NADH-ubiquinone oxidoreductase complex I%3B shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B NuoF is part of the soluble NADH dehydrogenase fragment%2C which represents the electron input part of NADH dehydrogenase;gbkey=CDS;product=NADH dehydrogenase subunit F;protein_id=WP_000789499.1;transl_table=11 NC_008258.1 RefSeq gene 2402218 2402718 . - . ID=gene2612;Name=SFV_RS13130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13130;old_locus_tag=SFV_2352 NC_008258.1 Protein Homology CDS 2402218 2402718 . - 0 ID=cds2561;Parent=gene2612;Dbxref=Genbank:WP_000545042.1;Name=WP_000545042.1;Note=Catalyzes the transfer of electrons from NADH to quinone;gbkey=CDS;product=NADH-quinone oxidoreductase subunit E;protein_id=WP_000545042.1;transl_table=11 NC_008258.1 RefSeq gene 2402721 2404511 . - . ID=gene2613;Name=SFV_RS13135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13135;old_locus_tag=SFV_2353 NC_008258.1 Protein Homology CDS 2402721 2404511 . - 0 ID=cds2562;Parent=gene2613;Dbxref=Genbank:WP_001341577.1;Name=WP_001341577.1;Note=NuoCD%3B NDH-1 shuttles electrons from NADH%2C via FMN and iron-sulfur (Fe-S) centers%2C to quinones in the respiratory chain%3B subunits NuoCD%2C E%2C F%2C and G constitute the peripheral sector of the complex%3B in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms;gbkey=CDS;product=NADH-quinone oxidoreductase subunit C/D;protein_id=WP_001341577.1;transl_table=11 NC_008258.1 RefSeq gene 2404617 2405279 . - . ID=gene2614;Name=SFV_RS13140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13140;old_locus_tag=SFV_2354 NC_008258.1 Protein Homology CDS 2404617 2405279 . - 0 ID=cds2563;Parent=gene2614;Dbxref=Genbank:WP_000386733.1;Name=WP_000386733.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit B;protein_id=WP_000386733.1;transl_table=11 NC_008258.1 RefSeq gene 2405295 2405738 . - . ID=gene2615;Name=SFV_RS13145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13145;old_locus_tag=SFV_2355 NC_008258.1 Protein Homology CDS 2405295 2405738 . - 0 ID=cds2564;Parent=gene2615;Dbxref=Genbank:WP_000062997.1;Name=WP_000062997.1;gbkey=CDS;product=NADH-quinone oxidoreductase subunit A;protein_id=WP_000062997.1;transl_table=11 NC_008258.1 RefSeq gene 2406370 2407308 . - . ID=gene2616;Name=SFV_RS13150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13150;old_locus_tag=SFV_2356 NC_008258.1 Protein Homology CDS 2406370 2407308 . - 0 ID=cds2565;Parent=gene2616;Dbxref=Genbank:WP_000622289.1;Name=WP_000622289.1;Note=involved in the regulation of genes involved in flagella synthesis%2C motility and chemotaxis;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000622289.1;transl_table=11 NC_008258.1 RefSeq gene 2408233 2409450 . + . ID=gene2617;Name=SFV_RS13155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13155;old_locus_tag=SFV_2357 NC_008258.1 Protein Homology CDS 2408233 2409450 . + 0 ID=cds2566;Parent=gene2617;Dbxref=Genbank:WP_000074527.1;Name=WP_000074527.1;Note=broad specificity%3B family IV%3B in Corynebacterium glutamicum this protein can use glutamate%2C 2-aminobutyrate%2C and aspartate as amino donors and pyruvate as the acceptor;gbkey=CDS;product=glutamate--pyruvate aminotransferase AlaA;protein_id=WP_000074527.1;transl_table=11 NC_008258.1 RefSeq gene 2409534 2410133 . + . ID=gene2618;Name=SFV_RS13160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13160;old_locus_tag=SFV_2358 NC_008258.1 Protein Homology CDS 2409534 2410133 . + 0 ID=cds2567;Parent=gene2618;Dbxref=Genbank:WP_000813851.1;Name=WP_000813851.1;gbkey=CDS;product=5'-deoxynucleotidase YfbR;protein_id=WP_000813851.1;transl_table=11 NC_008258.1 RefSeq gene 2410192 2412024 . - . ID=gene2619;Name=SFV_RS13165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13165;old_locus_tag=SFV_2359 NC_008258.1 Protein Homology CDS 2410192 2412024 . - 0 ID=cds2568;Parent=gene2619;Dbxref=Genbank:WP_001012912.1;Name=WP_001012912.1;gbkey=CDS;product=transporter;protein_id=WP_001012912.1;transl_table=11 NC_008258.1 RefSeq gene 2412111 2412761 . - . ID=gene2620;Name=SFV_RS13170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13170;old_locus_tag=SFV_2360 NC_008258.1 Protein Homology CDS 2412111 2412761 . - 0 ID=cds2569;Parent=gene2620;Dbxref=Genbank:WP_001203399.1;Name=WP_001203399.1;gbkey=CDS;product=phosphatase;protein_id=WP_001203399.1;transl_table=11 NC_008258.1 RefSeq gene 2412772 2413266 . - . ID=gene2621;Name=SFV_RS13175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13175;old_locus_tag=SFV_2361 NC_008258.1 Protein Homology CDS 2412772 2413266 . - 0 ID=cds2570;Parent=gene2621;Dbxref=Genbank:WP_000426125.1;Name=WP_000426125.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000426125.1;transl_table=11 NC_008258.1 RefSeq gene 2413349 2413804 . - . ID=gene2622;Name=SFV_RS13180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13180;old_locus_tag=SFV_2362 NC_008258.1 Protein Homology CDS 2413349 2413804 . - 0 ID=cds2571;Parent=gene2622;Dbxref=Genbank:WP_000106622.1;Name=WP_000106622.1;gbkey=CDS;product=membrane protein;protein_id=WP_000106622.1;transl_table=11 NC_008258.1 RefSeq gene 2413873 2414004 . - . ID=gene2623;Name=SFV_RS13185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13185 NC_008258.1 Protein Homology CDS 2413873 2414004 . - 0 ID=cds2572;Parent=gene2623;Dbxref=Genbank:WP_001115612.1;Name=WP_001115612.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001115612.1;transl_table=11 NC_008258.1 RefSeq gene 2414142 2415344 . + . ID=gene2624;Name=SFV_RS13190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13190;old_locus_tag=SFV_2363 NC_008258.1 Protein Homology CDS 2414142 2415344 . + 0 ID=cds2573;Parent=gene2624;Dbxref=Genbank:WP_000095706.1;Name=WP_000095706.1;Note=AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation%3B utilizes magnesium and ATP%3B also involved in conversion of acetate to aceyl-CoA%3B also known to act on propionate;gbkey=CDS;product=acetate kinase;protein_id=WP_000095706.1;transl_table=11 NC_008258.1 RefSeq gene 2415419 2417563 . + . ID=gene2625;Name=SFV_RS13195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13195;old_locus_tag=SFV_2364 NC_008258.1 Protein Homology CDS 2415419 2417563 . + 0 ID=cds2574;Parent=gene2625;Dbxref=Genbank:WP_000086722.1;Name=WP_000086722.1;Note=catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate%3B when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate;gbkey=CDS;product=phosphate acetyltransferase;protein_id=WP_000086722.1;transl_table=11 NC_008258.1 RefSeq gene 2417753 2419273 . + . ID=gene2626;Name=SFV_RS13200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13200;old_locus_tag=SFV_2365 NC_008258.1 Protein Homology CDS 2417753 2419273 . + 0 ID=cds2575;Parent=gene2626;Dbxref=Genbank:WP_001273089.1;Name=WP_001273089.1;gbkey=CDS;product=membrane protein;protein_id=WP_001273089.1;transl_table=11 NC_008258.1 RefSeq gene 2419306 2419848 . - . ID=gene2627;Name=SFV_RS13205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13205;old_locus_tag=SFV_2366 NC_008258.1 Protein Homology CDS 2419306 2419848 . - 0 ID=cds2576;Parent=gene2627;Dbxref=Genbank:WP_000437938.1;Name=WP_000437938.1;gbkey=CDS;product=NUDIX hydrolase;protein_id=WP_000437938.1;transl_table=11 NC_008258.1 RefSeq gene 2419906 2420457 . - . ID=gene2628;Name=SFV_RS13210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13210;old_locus_tag=SFV_2367 NC_008258.1 Protein Homology CDS 2419906 2420457 . - 0 ID=cds2577;Parent=gene2628;Dbxref=Genbank:WP_005046975.1;Name=WP_005046975.1;gbkey=CDS;product=phosphodiesterase;protein_id=WP_005046975.1;transl_table=11 NC_008258.1 RefSeq gene 2420513 2421157 . - . ID=gene2629;Name=SFV_RS13215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13215;old_locus_tag=SFV_2368 NC_008258.1 Protein Homology CDS 2420513 2421157 . - 0 ID=cds2578;Parent=gene2629;Dbxref=Genbank:WP_000042440.1;Name=WP_000042440.1;Note=catalyzes the formation of 2%2C4-dinitrophenyl-S-glutathione from 1-chloro-2%2C4-dinitrobenzene and glutathione;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000042440.1;transl_table=11 NC_008258.1 RefSeq gene 2421293 2421940 . + . ID=gene2630;Name=SFV_RS13220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13220;old_locus_tag=SFV_2369 NC_008258.1 Protein Homology CDS 2421293 2421940 . + 0 ID=cds2579;Parent=gene2630;Dbxref=Genbank:WP_000566470.1;Name=WP_000566470.1;gbkey=CDS;product=GSH-dependent disulfide bond oxidoreductase;protein_id=WP_000566470.1;transl_table=11 NC_008258.1 RefSeq gene 2421997 2422359 . + . ID=gene2631;Name=folX;gbkey=Gene;gene=folX;gene_biotype=protein_coding;locus_tag=SFV_RS13225;old_locus_tag=SFV_2370 NC_008258.1 Protein Homology CDS 2421997 2422359 . + 0 ID=cds2580;Parent=gene2631;Dbxref=Genbank:WP_000068457.1;Name=WP_000068457.1;Note=catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate;gbkey=CDS;gene=folX;product=D-erythro-7%2C8-dihydroneopterin triphosphate epimerase;protein_id=WP_000068457.1;transl_table=11 NC_008258.1 RefSeq gene 2422380 2423273 . + . ID=gene2632;Name=SFV_RS13230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13230;old_locus_tag=SFV_2371 NC_008258.1 Protein Homology CDS 2422380 2423273 . + 0 ID=cds2581;Parent=gene2632;Dbxref=Genbank:WP_001028345.1;Name=WP_001028345.1;gbkey=CDS;product=epimerase;protein_id=WP_001028345.1;transl_table=11 NC_008258.1 RefSeq gene 2423321 2424211 . - . ID=gene2633;Name=SFV_RS13235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13235;old_locus_tag=SFV_2372 NC_008258.1 Protein Homology CDS 2423321 2424211 . - 0 ID=cds2582;Parent=gene2633;Dbxref=Genbank:WP_000156161.1;Name=WP_000156161.1;gbkey=CDS;product=transposase;protein_id=WP_000156161.1;transl_table=11 NC_008258.1 RefSeq gene 2424408 2425181 . - . ID=gene2634;Name=SFV_RS13240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13240;old_locus_tag=SFV_2373 NC_008258.1 Protein Homology CDS 2424408 2425181 . - 0 ID=cds2583;Parent=gene2634;Dbxref=Genbank:WP_001293619.1;Name=WP_001293619.1;gbkey=CDS;product=histidine ABC transporter ATP-binding protein;protein_id=WP_001293619.1;transl_table=11 NC_008258.1 RefSeq gene 2425189 2425905 . - . ID=gene2635;Name=SFV_RS13245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13245;old_locus_tag=SFV_2374 NC_008258.1 Protein Homology CDS 2425189 2425905 . - 0 ID=cds2584;Parent=gene2635;Dbxref=Genbank:WP_000569958.1;Name=WP_000569958.1;Note=with HisJPQ is involved in transport of histidine%2C lysine%2C arginine and ornithine;gbkey=CDS;product=histidine ABC transporter permease;protein_id=WP_000569958.1;transl_table=11 NC_008258.1 RefSeq gene 2425902 2426588 . - . ID=gene2636;Name=SFV_RS13250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13250;old_locus_tag=SFV_2375 NC_008258.1 Protein Homology CDS 2425902 2426588 . - 0 ID=cds2585;Parent=gene2636;Dbxref=Genbank:WP_000965510.1;Name=WP_000965510.1;Note=with HisJMP is involved in the transport of histidine/lysine/arginine/ornithine;gbkey=CDS;product=histidine/lysine/arginine/ornithine ABC transporter permease HisQ;protein_id=WP_000965510.1;transl_table=11 NC_008258.1 RefSeq gene 2426678 2427460 . - . ID=gene2637;Name=SFV_RS13255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13255;old_locus_tag=SFV_2376 NC_008258.1 Protein Homology CDS 2426678 2427460 . - 0 ID=cds2586;Parent=gene2637;Dbxref=Genbank:WP_000737628.1;Name=WP_000737628.1;Note=with HisPMQ is involved in the transport of histidine;gbkey=CDS;product=zinc transporter;protein_id=WP_000737628.1;transl_table=11 NC_008258.1 RefSeq gene 2427681 2428382 . - . ID=gene2638;Name=SFV_RS13260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13260;old_locus_tag=SFV_2377 NC_008258.1 Protein Homology CDS 2427681 2428382 . - 0 ID=cds2587;Parent=gene2638;Dbxref=Genbank:WP_000016345.1;Name=WP_000016345.1;Note=with HisPMQ is involved in the transport of histidine;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_000016345.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2428353 2429687 . + . ID=id420;gbkey=repeat_region NC_008258.1 RefSeq region 2428356 2429686 . - . ID=id421;gbkey=mobile_element NC_008258.1 RefSeq gene 2428367 2429272 . - . ID=gene2639;Name=SFV_RS13265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13265;old_locus_tag=SFV_2378 NC_008258.1 Protein Homology CDS 2428367 2429272 . - 0 ID=cds2588;Parent=gene2639;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 2429230 2429640 . - . ID=gene2640;Name=SFV_RS13270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13270;old_locus_tag=SFV_2379 NC_008258.1 Protein Homology CDS 2429230 2429640 . - 0 ID=cds2589;Parent=gene2640;Dbxref=Genbank:WP_000636365.1;Name=WP_000636365.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000636365.1;transl_table=11 NC_008258.1 RefSeq gene 2430065 2430634 . - . ID=gene2641;Name=SFV_RS13275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13275;old_locus_tag=SFV_2380 NC_008258.1 Protein Homology CDS 2430065 2430634 . - 0 ID=cds2590;Parent=gene2641;Dbxref=Genbank:WP_000825706.1;Name=WP_000825706.1;Note=catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate;gbkey=CDS;product=3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=WP_000825706.1;transl_table=11 NC_008258.1 RefSeq gene 2430730 2432247 . - . ID=gene2642;Name=SFV_RS13280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13280;old_locus_tag=SFV_2381 NC_008258.1 Protein Homology CDS 2430730 2432247 . - 0 ID=cds2591;Parent=gene2642;Dbxref=Genbank:WP_000334194.1;Name=WP_000334194.1;Note=Catalyzes first step of the de novo purine nucleotide biosynthetic pathway;gbkey=CDS;product=amidophosphoribosyltransferase;protein_id=WP_000334194.1;transl_table=11 NC_008258.1 RefSeq gene 2432284 2432772 . - . ID=gene2643;Name=SFV_RS13285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13285;old_locus_tag=SFV_2382 NC_008258.1 Protein Homology CDS 2432284 2432772 . - 0 ID=cds2592;Parent=gene2643;Dbxref=Genbank:WP_000262113.1;Name=WP_000262113.1;Note=membrane protein required for colicin V production;gbkey=CDS;product=colicin V production protein;protein_id=WP_000262113.1;transl_table=11 NC_008258.1 RefSeq gene 2433031 2433693 . - . ID=gene2644;Name=SFV_RS13290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13290;old_locus_tag=SFV_2383 NC_008258.1 Protein Homology CDS 2433031 2433693 . - 0 ID=cds2593;Parent=gene2644;Dbxref=Genbank:WP_000146986.1;Name=WP_000146986.1;gbkey=CDS;product=cell division protein DedD;protein_id=WP_000146986.1;transl_table=11 NC_008258.1 RefSeq gene 2433683 2434951 . - . ID=gene2645;Name=SFV_RS13295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13295;old_locus_tag=SFV_2384 NC_008258.1 Protein Homology CDS 2433683 2434951 . - 0 ID=cds2594;Parent=gene2645;Dbxref=Genbank:WP_000584575.1;Name=WP_000584575.1;gbkey=CDS;product=bifunctional folylpolyglutamate synthase/ dihydrofolate synthase;protein_id=WP_000584575.1;transl_table=11 NC_008258.1 RefSeq gene 2435021 2435935 . - . ID=gene2646;Name=SFV_RS13300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13300;old_locus_tag=SFV_2385 NC_008258.1 Protein Homology CDS 2435021 2435935 . - 0 ID=cds2595;Parent=gene2646;Dbxref=Genbank:WP_000118392.1;Name=WP_000118392.1;Note=catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%3B forms a tetramer of AccA2D2 subunits;gbkey=CDS;product=acetyl-CoA carboxylase carboxyltransferase subunit beta;protein_id=WP_000118392.1;transl_table=11 NC_008258.1 RefSeq gene 2436091 2436750 . - . ID=gene2647;Name=SFV_RS13305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13305;old_locus_tag=SFV_2386 NC_008258.1 Protein Homology CDS 2436091 2436750 . - 0 ID=cds2596;Parent=gene2647;Dbxref=Genbank:WP_000364322.1;Name=WP_000364322.1;gbkey=CDS;product=membrane protein;protein_id=WP_000364322.1;transl_table=11 NC_008258.1 RefSeq gene 2436833 2437645 . - . ID=gene2648;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;gene_synonym=hisT;locus_tag=SFV_RS13310;old_locus_tag=SFV_2387 NC_008258.1 Protein Homology CDS 2436833 2437645 . - 0 ID=cds2597;Parent=gene2648;Dbxref=Genbank:WP_001283581.1;Name=WP_001283581.1;Note=mediates pseudouridylation (positions 38%2C 39%2C 40) at the tRNA anticodon region which contributes to the structural stability;gbkey=CDS;gene=truA;product=tRNA pseudouridine synthase A;protein_id=WP_001283581.1;transl_table=11 NC_008258.1 RefSeq gene 2437645 2438658 . - . ID=gene2649;Name=SFV_RS13315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13315;old_locus_tag=SFV_2388 NC_008258.1 Protein Homology CDS 2437645 2438658 . - 0 ID=cds2598;Parent=gene2649;Dbxref=Genbank:WP_001289145.1;Name=WP_001289145.1;gbkey=CDS;product=semialdehyde dehydrogenase;protein_id=WP_001289145.1;transl_table=11 NC_008258.1 RefSeq gene 2438724 2439860 . - . ID=gene2650;Name=SFV_RS13320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13320;old_locus_tag=SFV_2389 NC_008258.1 Protein Homology CDS 2438724 2439860 . - 0 ID=cds2599;Parent=gene2650;Dbxref=Genbank:WP_000699105.1;Name=WP_000699105.1;Note=catalyzes the formation of 3-hydroxy-2-oxo-4-phosphonooxybutanoate from erythronate-4-phosphate;gbkey=CDS;product=erythronate-4-phosphate dehydrogenase;protein_id=WP_000699105.1;transl_table=11 NC_008258.1 RefSeq gene 2439959 2440954 . + . ID=gene2651;Name=flk;gbkey=Gene;gene=flk;gene_biotype=protein_coding;gene_synonym=div;locus_tag=SFV_RS13325;old_locus_tag=SFV_2390 NC_008258.1 Protein Homology CDS 2439959 2440954 . + 0 ID=cds2600;Parent=gene2651;Dbxref=Genbank:WP_000615806.1;Name=WP_000615806.1;Note=in Salmonella typhimurium Flk regulates flagellar biosynthesis by inhibition of the flagellar-associated type III secretion system%3B lowers secretion levels of the anti-sigma28 factor FlgM to the periplasm%3B inner membrane-anchored protein;gbkey=CDS;gene=flk;product=flagella biosynthesis regulator;protein_id=WP_000615806.1;transl_table=11 NC_008258.1 RefSeq gene 2440951 2442129 . - . ID=gene2652;Name=SFV_RS13330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13330;old_locus_tag=SFV_2391 NC_008258.1 Protein Homology CDS 2440951 2442129 . - 0 ID=cds2601;Parent=gene2652;Dbxref=Genbank:WP_000127806.1;Name=WP_000127806.1;gbkey=CDS;product=transporter;protein_id=WP_000127806.1;transl_table=11 NC_008258.1 RefSeq gene 2442384 2443625 . - . ID=gene2653;Name=SFV_RS13335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13335;old_locus_tag=SFV_2392 NC_008258.1 Protein Homology CDS 2442384 2443625 . - 0 ID=cds2602;Parent=gene2653;Dbxref=Genbank:WP_000817168.1;Name=WP_000817168.1;Note=FabB%2C beta-Ketoacyl-ACP synthase I%2C KASI%3B catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP%3B required for the elongation of short-chain unsaturated acyl-ACP;gbkey=CDS;product=3-oxoacyl-ACP synthase;protein_id=WP_000817168.1;transl_table=11 NC_008258.1 RefSeq gene 2443784 2445790 . + . ID=gene2654;Name=mnmC;gbkey=Gene;gene=mnmC;gene_biotype=protein_coding;gene_synonym=trmC,yfcK;locus_tag=SFV_RS13340;old_locus_tag=SFV_2393 NC_008258.1 Protein Homology CDS 2443784 2445790 . + 0 ID=cds2603;Parent=gene2654;Dbxref=Genbank:WP_000683784.1;Name=WP_000683784.1;Note=5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme;gbkey=CDS;gene=mnmC;product=tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC;protein_id=WP_000683784.1;transl_table=11 NC_008258.1 RefSeq gene 2445911 2446189 . - . ID=gene2655;Name=SFV_RS13345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13345;old_locus_tag=SFV_2394 NC_008258.1 Protein Homology CDS 2445911 2446189 . - 0 ID=cds2604;Parent=gene2655;Dbxref=Genbank:WP_000559763.1;Name=WP_000559763.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000559763.1;transl_table=11 NC_008258.1 RefSeq gene 2446223 2446771 . - . ID=gene2656;Name=SFV_RS13350;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13350;old_locus_tag=SFV_2395;pseudo=true NC_008258.1 Protein Homology CDS 2446223 2446771 . - 0 ID=cds2605;Parent=gene2656;exception=annotated by transcript or proteomic data;gbkey=CDS;product=elongation factor P hydroxylase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2446771 2447580 . - . ID=gene2657;Name=SFV_RS13355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13355;old_locus_tag=SFV_2396 NC_008258.1 Protein Homology CDS 2446771 2447580 . - 0 ID=cds2606;Parent=gene2657;Dbxref=Genbank:WP_000447357.1;Name=WP_000447357.1;gbkey=CDS;product=membrane protein;protein_id=WP_000447357.1;transl_table=11 NC_008258.1 RefSeq gene 2447580 2448404 . - . ID=gene2658;Name=mepA;gbkey=Gene;gene=mepA;gene_biotype=protein_coding;locus_tag=SFV_RS13360;old_locus_tag=SFV_2397 NC_008258.1 Protein Homology CDS 2447580 2448404 . - 0 ID=cds2607;Parent=gene2658;Dbxref=Genbank:WP_001043825.1;Name=WP_001043825.1;Note=D-alanyl-D-alanine endopeptidase%3B functions in hydrolyzing cell wall peptidoglycan%3B similar to LAS metallopeptidases%3B forms a dimer in periplasm;gbkey=CDS;gene=mepA;product=penicillin-insensitive murein endopeptidase;protein_id=WP_001043825.1;transl_table=11 NC_008258.1 RefSeq gene 2448408 2449493 . - . ID=gene2659;Name=SFV_RS13365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13365;old_locus_tag=SFV_2398 NC_008258.1 Protein Homology CDS 2448408 2449493 . - 0 ID=cds2608;Parent=gene2659;Dbxref=Genbank:WP_000918473.1;Name=WP_000918473.1;Note=catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis;gbkey=CDS;product=chorismate synthase;protein_id=WP_000918473.1;transl_table=11 NC_008258.1 RefSeq gene 2449528 2450460 . - . ID=gene2660;Name=SFV_RS13370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13370 NC_008258.1 Protein Homology CDS 2449528 2450460 . - 0 ID=cds2609;Parent=gene2660;Dbxref=Genbank:WP_001298774.1;Name=WP_001298774.1;Note=involved in methylation of ribosomal protein L3;gbkey=CDS;product=50S ribosomal protein L3 glutamine methyltransferase;protein_id=WP_001298774.1;transl_table=11 NC_008258.1 RefSeq gene 2450626 2451177 . + . ID=gene2661;Name=SFV_RS13375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13375;old_locus_tag=SFV_2399 NC_008258.1 Protein Homology CDS 2450626 2451177 . + 0 ID=cds2610;Parent=gene2661;Dbxref=Genbank:WP_000730806.1;Name=WP_000730806.1;gbkey=CDS;product=peptidase S10;protein_id=WP_000730806.1;transl_table=11 NC_008258.1 RefSeq gene 2451281 2452156 . - . ID=gene2662;Name=SFV_RS13380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13380;old_locus_tag=SFV_2401 NC_008258.1 Protein Homology CDS 2451281 2452156 . - 0 ID=cds2611;Parent=gene2662;Dbxref=Genbank:WP_005047010.1;Name=WP_005047010.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_005047010.1;transl_table=11 NC_008258.1 RefSeq gene 2452158 2452682 . - . ID=gene2663;Name=SFV_RS13385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13385;old_locus_tag=SFV_2402 NC_008258.1 Protein Homology CDS 2452158 2452682 . - 0 ID=cds2612;Parent=gene2663;Dbxref=Genbank:WP_000730295.1;Name=WP_000730295.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000730295.1;transl_table=11 NC_008258.1 RefSeq gene 2452679 2453149 . - . ID=gene2664;Name=SFV_RS13390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13390;old_locus_tag=SFV_2403 NC_008258.1 Protein Homology CDS 2452679 2453149 . - 0 ID=cds2613;Parent=gene2664;Dbxref=Genbank:WP_000822651.1;Name=WP_000822651.1;gbkey=CDS;product=fimbrial protein SteE;protein_id=WP_000822651.1;transl_table=11 NC_008258.1 RefSeq gene 2453146 2453652 . - . ID=gene2665;Name=SFV_RS13395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13395;old_locus_tag=SFV_2404 NC_008258.1 Protein Homology CDS 2453146 2453652 . - 0 ID=cds2614;Parent=gene2665;Dbxref=Genbank:WP_000678666.1;Name=WP_000678666.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000678666.1;transl_table=11 NC_008258.1 RefSeq gene 2453699 2454421 . - . ID=gene2666;Name=SFV_RS13400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13400;old_locus_tag=SFV_2405 NC_008258.1 Protein Homology CDS 2453699 2454421 . - 0 ID=cds2615;Parent=gene2666;Dbxref=Genbank:WP_001281618.1;Name=WP_001281618.1;gbkey=CDS;product=fimbrial protein StfD;protein_id=WP_001281618.1;transl_table=11 NC_008258.1 RefSeq gene 2454441 2457082 . - . ID=gene2667;Name=SFV_RS13405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13405;pseudo=true NC_008258.1 Protein Homology CDS 2454441 2457082 . - 0 ID=cds2616;Parent=gene2667;exception=annotated by transcript or proteomic data;gbkey=CDS;product=fimbrial assembly protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2457164 2457727 . - . ID=gene2668;Name=SFV_RS13410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13410;old_locus_tag=SFV_2407 NC_008258.1 Protein Homology CDS 2457164 2457727 . - 0 ID=cds2617;Parent=gene2668;Dbxref=Genbank:WP_000033324.1;Name=WP_000033324.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000033324.1;transl_table=11 NC_008258.1 RefSeq gene 2458411 2458896 . - . ID=gene2669;Name=SFV_RS13415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13415;old_locus_tag=SFV_2408 NC_008258.1 Protein Homology CDS 2458411 2458896 . - 0 ID=cds2618;Parent=gene2669;Dbxref=Genbank:WP_001195824.1;Name=WP_001195824.1;gbkey=CDS;product=phosphohistidine phosphatase;protein_id=WP_001195824.1;transl_table=11 NC_008258.1 RefSeq gene 2459099 2461243 . - . ID=gene2670;Name=fadJ;gbkey=Gene;gene=fadJ;gene_biotype=protein_coding;locus_tag=SFV_RS13420;old_locus_tag=SFV_2409 NC_008258.1 Protein Homology CDS 2459099 2461243 . - 0 ID=cds2619;Parent=gene2670;Dbxref=Genbank:WP_000425000.1;Name=WP_000425000.1;Note=multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI%3B similar to FadA2B2 complex%3B involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate;gbkey=CDS;gene=fadJ;product=fatty acid oxidation complex subunit alpha;protein_id=WP_000425000.1;transl_table=11 NC_008258.1 RefSeq gene 2461243 2462553 . - . ID=gene2671;Name=fadI;gbkey=Gene;gene=fadI;gene_biotype=protein_coding;locus_tag=SFV_RS13425;old_locus_tag=SFV_2410 NC_008258.1 Protein Homology CDS 2461243 2462553 . - 0 ID=cds2620;Parent=gene2671;Dbxref=Genbank:WP_000531927.1;Name=WP_000531927.1;Note=FadI%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadJ%3B similar to FadA2B2 complex%3B functions in beta-oxidation of fatty acids during anaerobic growth;gbkey=CDS;gene=fadI;product=3-ketoacyl-CoA thiolase;protein_id=WP_000531927.1;transl_table=11 NC_008258.1 RefSeq gene 2462733 2463017 . - . ID=gene2672;Name=SFV_RS13430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13430;old_locus_tag=SFV_2411 NC_008258.1 Protein Homology CDS 2462733 2463017 . - 0 ID=cds2621;Parent=gene2672;Dbxref=Genbank:WP_005070009.1;Name=WP_005070009.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005070009.1;transl_table=11 NC_008258.1 RefSeq gene 2463389 2464729 . + . ID=gene2673;Name=SFV_RS13435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13435;old_locus_tag=SFV_2412 NC_008258.1 Protein Homology CDS 2463389 2464729 . + 0 ID=cds2622;Parent=gene2673;Dbxref=Genbank:WP_024260290.1;Name=WP_024260290.1;gbkey=CDS;product=long-chain fatty acid transporter;protein_id=WP_024260290.1;transl_table=11 NC_008258.1 RefSeq gene 2465095 2466153 . + . ID=gene2674;Name=SFV_RS13440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13440;old_locus_tag=SFV_2413 NC_008258.1 Protein Homology CDS 2465095 2466153 . + 0 ID=cds2623;Parent=gene2674;Dbxref=Genbank:WP_000937781.1;Name=WP_000937781.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937781.1;transl_table=11 NC_008258.1 RefSeq gene 2466335 2467090 . - . ID=gene2675;Name=SFV_RS13445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13445;old_locus_tag=SFV_2414 NC_008258.1 Protein Homology CDS 2466335 2467090 . - 0 ID=cds2624;Parent=gene2675;Dbxref=Genbank:WP_000776768.1;Name=WP_000776768.1;Note=involved in maintaining OM lipid asymmetry;gbkey=CDS;product=lipoprotein;protein_id=WP_000776768.1;transl_table=11 NC_008258.1 RefSeq gene 2467384 2468316 . + . ID=gene2676;Name=SFV_RS13450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13450;old_locus_tag=SFV_2415 NC_008258.1 Protein Homology CDS 2467384 2468316 . + 0 ID=cds2625;Parent=gene2676;Dbxref=Genbank:WP_000368114.1;Name=WP_000368114.1;gbkey=CDS;product=membrane protein;protein_id=WP_000368114.1;transl_table=11 NC_008258.1 RefSeq gene 2468390 2468464 . + . ID=gene2677;Name=SFV_RS13455;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS13455;old_locus_tag=SFV_2416 NC_008258.1 tRNAscan-SE tRNA 2468390 2468464 . + . ID=rna51;Parent=gene2677;anticodon=(pos:2468423..2468425);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 2468390 2468464 . + . ID=id422;Parent=rna51;anticodon=(pos:2468423..2468425);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 2468626 2469102 . + . ID=gene2678;Name=SFV_RS13460;end_range=2469102,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13460;old_locus_tag=SFV_2417;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2468626 2469102 . + 0 ID=cds2626;Parent=gene2678;end_range=2469102,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=integrase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2469086 2470339 . + . ID=id423;gbkey=repeat_region NC_008258.1 RefSeq region 2469087 2470336 . - . ID=id424;gbkey=mobile_element NC_008258.1 RefSeq gene 2469095 2469773 . - . ID=gene2679;Name=SFV_RS13465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13465;old_locus_tag=SFV_2418;pseudo=true NC_008258.1 Protein Homology CDS 2469095 2469773 . - 0 ID=cds2627;Parent=gene2679;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2469962 2470264 . - . ID=gene2680;Name=SFV_RS13470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13470;old_locus_tag=SFV_2419 NC_008258.1 Protein Homology CDS 2469962 2470264 . - 0 ID=cds2628;Parent=gene2680;Dbxref=Genbank:WP_001530485.1;Name=WP_001530485.1;gbkey=CDS;product=transposase;protein_id=WP_001530485.1;transl_table=11 NC_008258.1 RefSeq gene 2470534 2471448 . - . ID=gene2681;Name=SFV_RS13475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13475;old_locus_tag=SFV_2420 NC_008258.1 Protein Homology CDS 2470534 2471448 . - 0 ID=cds2629;Parent=gene2681;Dbxref=Genbank:WP_024260291.1;Name=WP_024260291.1;Note=phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P)%3B synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least;gbkey=CDS;product=aminoimidazole riboside kinase;protein_id=WP_024260291.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2471441 2472869 . + . ID=id425;gbkey=repeat_region NC_008258.1 RefSeq region 2471444 2472869 . - . ID=id426;gbkey=mobile_element NC_008258.1 RefSeq gene 2471454 2472785 . - . ID=gene2682;Name=SFV_RS13480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13480;old_locus_tag=SFV_2421 NC_008258.1 Protein Homology CDS 2471454 2472785 . - 0 ID=cds2630;Parent=gene2682;Dbxref=Genbank:WP_000547360.1;Name=WP_000547360.1;gbkey=CDS;product=transposase;protein_id=WP_000547360.1;transl_table=11 NC_008258.1 RefSeq gene 2473101 2474534 . + . ID=gene2683;Name=SFV_RS13485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13485;old_locus_tag=SFV_2422 NC_008258.1 Protein Homology CDS 2473101 2474534 . + 0 ID=cds2631;Parent=gene2683;Dbxref=Genbank:WP_000194512.1;Name=WP_000194512.1;gbkey=CDS;product=glycosyl hydrolase family 32;protein_id=WP_000194512.1;transl_table=11 NC_008258.1 RefSeq gene 2474542 2475537 . - . ID=gene2684;Name=SFV_RS13490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13490;old_locus_tag=SFV_2423 NC_008258.1 Protein Homology CDS 2474542 2475537 . - 0 ID=cds2632;Parent=gene2684;Dbxref=Genbank:WP_001344440.1;Name=WP_001344440.1;gbkey=CDS;product=sucrose operon repressor;protein_id=WP_001344440.1;transl_table=11 NC_008258.1 RefSeq gene 2475768 2475986 . + . ID=gene2685;Name=SFV_RS13495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13495;old_locus_tag=SFV_2424 NC_008258.1 Protein Homology CDS 2475768 2475986 . + 0 ID=cds2633;Parent=gene2685;Dbxref=Genbank:WP_005105658.1;Name=WP_005105658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105658.1;transl_table=11 NC_008258.1 RefSeq gene 2476004 2477332 . + . ID=gene2686;Name=SFV_RS13500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13500;old_locus_tag=SFV_2425 NC_008258.1 Protein Homology CDS 2476004 2477332 . + 0 ID=cds2634;Parent=gene2686;Dbxref=Genbank:WP_000426458.1;Name=WP_000426458.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=d-serine dehydratase;protein_id=WP_000426458.1;transl_table=11 NC_008258.1 RefSeq gene 2477440 2478978 . - . ID=gene2687;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=SFV_RS13505;old_locus_tag=SFV_2426 NC_008258.1 Protein Homology CDS 2477440 2478978 . - 0 ID=cds2635;Parent=gene2687;Dbxref=Genbank:WP_001018726.1;Name=WP_001018726.1;Note=multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid;gbkey=CDS;gene=emrB;product=multidrug resistance protein B;protein_id=WP_001018726.1;transl_table=11 NC_008258.1 RefSeq gene 2478978 2480141 . - . ID=gene2688;Name=SFV_RS13510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13510;old_locus_tag=SFV_2427 NC_008258.1 Protein Homology CDS 2478978 2480141 . - 0 ID=cds2636;Parent=gene2688;Dbxref=Genbank:WP_000435187.1;Name=WP_000435187.1;Note=with ErmA and TolC forms a multidrug efflux system;gbkey=CDS;product=multidrug resistance protein K;protein_id=WP_000435187.1;transl_table=11 NC_008258.1 RefSeq gene 2480558 2481172 . + . ID=gene2689;Name=SFV_RS13515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13515;old_locus_tag=SFV_2428 NC_008258.1 Protein Homology CDS 2480558 2481172 . + 0 ID=cds2637;Parent=gene2689;Dbxref=Genbank:WP_000991377.1;Name=WP_000991377.1;Note=response regulator in two-component regulatory system with EvgS%3B phosphorylated EvgA activates ompC%2C emrKY%2C gadABC%2C hdeAB and others genes%3B involved in acid resistance%2C osmotic adaption%2C and drug resistance;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_000991377.1;transl_table=11 NC_008258.1 RefSeq gene 2481387 2484770 . + . ID=gene2690;Name=SFV_RS13520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13520;old_locus_tag=SFV_2429 NC_008258.1 Protein Homology CDS 2481387 2484770 . + 0 ID=cds2638;Parent=gene2690;Dbxref=Genbank:WP_005080255.1;Name=WP_005080255.1;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_005080255.1;transl_table=11 NC_008258.1 RefSeq gene 2484826 2485971 . - . ID=gene2691;Name=SFV_RS13525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13525;old_locus_tag=SFV_2430 NC_008258.1 Protein Homology CDS 2484826 2485971 . - 0 ID=cds2639;Parent=gene2691;Dbxref=Genbank:WP_005047065.1;Name=WP_005047065.1;gbkey=CDS;product=CoA-transferase;protein_id=WP_005047065.1;transl_table=11 NC_008258.1 RefSeq gene 2486045 2486989 . - . ID=gene2692;Name=SFV_RS13530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13530;old_locus_tag=SFV_2431 NC_008258.1 Protein Homology CDS 2486045 2486989 . - 0 ID=cds2640;Parent=gene2692;Dbxref=Genbank:WP_000955028.1;Name=WP_000955028.1;Note=member of the AEC family of auxin efflux transporters%3B unknown function;gbkey=CDS;product=transporter;protein_id=WP_000955028.1;transl_table=11 NC_008258.1 RefSeq gene 2487059 2488753 . - . ID=gene2693;Name=SFV_RS13535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13535;old_locus_tag=SFV_2432 NC_008258.1 Protein Homology CDS 2487059 2488753 . - 0 ID=cds2641;Parent=gene2693;Dbxref=Genbank:WP_001283471.1;Name=WP_001283471.1;Note=catalyzes the formation of formyl-CoA from oxalyl-CoA;gbkey=CDS;product=oxalyl-CoA decarboxylase;protein_id=WP_001283471.1;transl_table=11 NC_008258.1 RefSeq gene 2488807 2490057 . - . ID=gene2694;Name=SFV_RS13540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13540;old_locus_tag=SFV_2433 NC_008258.1 Protein Homology CDS 2488807 2490057 . - 0 ID=cds2642;Parent=gene2694;Dbxref=Genbank:WP_000106759.1;Name=WP_000106759.1;Note=catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA;gbkey=CDS;product=formyl-CoA--oxalate CoA-transferase;protein_id=WP_000106759.1;transl_table=11 NC_008258.1 RefSeq gene 2490570 2491193 . - . ID=gene2695;Name=SFV_RS13545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13545;old_locus_tag=SFV_2434 NC_008258.1 Protein Homology CDS 2490570 2491193 . - 0 ID=cds2643;Parent=gene2695;Dbxref=Genbank:WP_000825597.1;Name=WP_000825597.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000825597.1;transl_table=11 NC_008258.1 RefSeq gene 2491490 2491765 . + . ID=gene2696;Name=SFV_RS13550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13550 NC_008258.1 Protein Homology CDS 2491490 2491765 . + 0 ID=cds2644;Parent=gene2696;Dbxref=Genbank:WP_000867638.1;Name=WP_000867638.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000867638.1;transl_table=11 NC_008258.1 RefSeq gene 2491750 2491887 . - . ID=gene2697;Name=SFV_RS13555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13555 NC_008258.1 Protein Homology CDS 2491750 2491887 . - 0 ID=cds2645;Parent=gene2697;Dbxref=Genbank:WP_009008053.1;Name=WP_009008053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_009008053.1;transl_table=11 NC_008258.1 RefSeq gene 2491842 2492084 . - . ID=gene2698;Name=SFV_RS13560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13560;old_locus_tag=SFV_2435 NC_008258.1 Protein Homology CDS 2491842 2492084 . - 0 ID=cds2646;Parent=gene2698;Dbxref=Genbank:WP_000639883.1;Name=WP_000639883.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000639883.1;transl_table=11 NC_008258.1 RefSeq gene 2492437 2493357 . + . ID=gene2699;Name=SFV_RS13565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13565;old_locus_tag=SFV_2436 NC_008258.1 Protein Homology CDS 2492437 2493357 . + 0 ID=cds2647;Parent=gene2699;Dbxref=Genbank:WP_000484404.1;Name=WP_000484404.1;Note=Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock;gbkey=CDS;product=lipid A biosynthesis palmitoleoyltransferase;protein_id=WP_000484404.1;transl_table=11 NC_008258.1 RefSeq gene 2493848 2495086 . - . ID=gene2700;Name=SFV_RS13570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13570;old_locus_tag=SFV_2437 NC_008258.1 Protein Homology CDS 2493848 2495086 . - 0 ID=cds2648;Parent=gene2700;Dbxref=Genbank:WP_000785946.1;Name=WP_000785946.1;gbkey=CDS;product=aspartate aminotransferase;protein_id=WP_000785946.1;transl_table=11 NC_008258.1 RefSeq gene 2495463 2496949 . + . ID=gene2701;Name=SFV_RS13575;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13575;pseudo=true NC_008258.1 Protein Homology CDS 2495463 2496949 . + 0 ID=cds2649;Parent=gene2701;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2496964 2497698 . + . ID=gene2702;Name=SFV_RS13580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13580;old_locus_tag=SFV_2439 NC_008258.1 Protein Homology CDS 2496964 2497698 . + 0 ID=cds2650;Parent=gene2702;Dbxref=Genbank:WP_001295458.1;Name=WP_001295458.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001295458.1;transl_table=11 NC_008258.1 RefSeq gene 2497711 2498568 . + . ID=gene2703;Name=SFV_RS13585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13585;old_locus_tag=SFV_2440 NC_008258.1 Protein Homology CDS 2497711 2498568 . + 0 ID=cds2651;Parent=gene2703;Dbxref=Genbank:WP_000646848.1;Name=WP_000646848.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_000646848.1;transl_table=11 NC_008258.1 RefSeq gene 2498571 2501066 . - . ID=gene2704;Name=SFV_RS13590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13590;old_locus_tag=SFV_2441 NC_008258.1 Protein Homology CDS 2498571 2501066 . - 0 ID=cds2652;Parent=gene2704;Dbxref=Genbank:WP_000955858.1;Name=WP_000955858.1;gbkey=CDS;product=PTS fructose transporter subunit IIA;protein_id=WP_000955858.1;transl_table=11 NC_008258.1 RefSeq gene 2501091 2502128 . - . ID=gene2705;Name=SFV_RS13595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13595;old_locus_tag=SFV_2442 NC_008258.1 Protein Homology CDS 2501091 2502128 . - 0 ID=cds2653;Parent=gene2705;Dbxref=Genbank:WP_000366003.1;Name=WP_000366003.1;Note=metalloprotein;gbkey=CDS;product=exoaminopeptidase;protein_id=WP_000366003.1;transl_table=11 NC_008258.1 RefSeq gene 2502128 2503211 . - . ID=gene2706;Name=SFV_RS13600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13600;pseudo=true NC_008258.1 Protein Homology CDS 2502128 2503211 . - 0 ID=cds2654;Parent=gene2706;Note=Xaa-Pro aminopeptidase%3B limited methionine aminopeptidase;exception=annotated by transcript or proteomic data;gbkey=CDS;product=aminopeptidase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2503226 2504473 . - . ID=gene2707;Name=SFV_RS13605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13605;old_locus_tag=SFV_2444 NC_008258.1 Protein Homology CDS 2503226 2504473 . - 0 ID=cds2655;Parent=gene2707;Dbxref=Genbank:WP_000985333.1;Name=WP_000985333.1;gbkey=CDS;product=PTS fructose transporter subunit IIC;protein_id=WP_000985333.1;transl_table=11 NC_008258.1 RefSeq gene 2504495 2504821 . - . ID=gene2708;Name=SFV_RS13610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13610;old_locus_tag=SFV_2445 NC_008258.1 Protein Homology CDS 2504495 2504821 . - 0 ID=cds2656;Parent=gene2708;Dbxref=Genbank:WP_005047083.1;Name=WP_005047083.1;gbkey=CDS;product=fructose-like phosphotransferase enzyme IIB component 1;protein_id=WP_005047083.1;transl_table=11 NC_008258.1 RefSeq gene 2505040 2506005 . - . ID=gene2709;Name=glk;gbkey=Gene;gene=glk;gene_biotype=protein_coding;locus_tag=SFV_RS13615;old_locus_tag=SFV_2446 NC_008258.1 Protein Homology CDS 2505040 2506005 . - 0 ID=cds2657;Parent=gene2709;Dbxref=Genbank:WP_000170347.1;Name=WP_000170347.1;Note=catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate;gbkey=CDS;gene=glk;product=glucokinase;protein_id=WP_000170347.1;transl_table=11 NC_008258.1 RefSeq gene 2506209 2507465 . + . ID=gene2710;Name=SFV_RS13620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13620;old_locus_tag=SFV_2447 NC_008258.1 Protein Homology CDS 2506209 2507465 . + 0 ID=cds2658;Parent=gene2710;Dbxref=Genbank:WP_000903152.1;Name=WP_000903152.1;gbkey=CDS;product=ion channel protein;protein_id=WP_000903152.1;transl_table=11 NC_008258.1 RefSeq gene 2507580 2507906 . + . ID=gene2711;Name=SFV_RS13625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13625;old_locus_tag=SFV_2448 NC_008258.1 Protein Homology CDS 2507580 2507906 . + 0 ID=cds2659;Parent=gene2711;Dbxref=Genbank:WP_000490072.1;Name=WP_000490072.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000490072.1;transl_table=11 NC_008258.1 RefSeq gene 2507827 2507988 . + . ID=gene2712;Name=SFV_RS24510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24510 NC_008258.1 Protein Homology CDS 2507827 2507988 . + 0 ID=cds2660;Parent=gene2712;Dbxref=Genbank:WP_042188255.1;Name=WP_042188255.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_042188255.1;transl_table=11 NC_008258.1 RefSeq gene 2508047 2509285 . - . ID=gene2713;Name=SFV_RS13635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13635;old_locus_tag=SFV_2449 NC_008258.1 Protein Homology CDS 2508047 2509285 . - 0 ID=cds2661;Parent=gene2713;Dbxref=Genbank:WP_000186375.1;Name=WP_000186375.1;gbkey=CDS;product=divalent metal cation transporter MntH;protein_id=WP_000186375.1;transl_table=11 NC_008258.1 RefSeq gene 2509621 2510823 . + . ID=gene2714;Name=SFV_RS13640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13640;old_locus_tag=SFV_2450 NC_008258.1 Protein Homology CDS 2509621 2510823 . + 0 ID=cds2662;Parent=gene2714;Dbxref=Genbank:WP_000376337.1;Name=WP_000376337.1;gbkey=CDS;product=nucleoside permease NupC;protein_id=WP_000376337.1;transl_table=11 NC_008258.1 RefSeq gene 2510873 2513062 . - . ID=gene2715;Name=SFV_RS13645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13645;old_locus_tag=SFV_2451 NC_008258.1 Protein Homology CDS 2510873 2513062 . - 0 ID=cds2663;Parent=gene2715;Dbxref=Genbank:WP_005105669.1;Name=WP_005105669.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105669.1;transl_table=11 NC_008258.1 RefSeq gene 2513270 2513345 . - . ID=gene2716;Name=SFV_RS13650;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS13650;old_locus_tag=SFV_2452 NC_008258.1 tRNAscan-SE tRNA 2513270 2513345 . - . ID=rna52;Parent=gene2716;anticodon=(pos:complement(2513310..2513312));gbkey=tRNA;product=tRNA-Ala NC_008258.1 tRNAscan-SE exon 2513270 2513345 . - . ID=id427;Parent=rna52;anticodon=(pos:complement(2513310..2513312));gbkey=tRNA;product=tRNA-Ala NC_008258.1 RefSeq gene 2513581 2513925 . + . ID=gene2717;Name=SFV_RS13655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13655;old_locus_tag=SFV_2453 NC_008258.1 Protein Homology CDS 2513581 2513925 . + 0 ID=cds2664;Parent=gene2717;Dbxref=Genbank:WP_001296278.1;Name=WP_001296278.1;gbkey=CDS;product=DUF1323 family DNA-binding protein;protein_id=WP_001296278.1;transl_table=11 NC_008258.1 RefSeq gene 2513927 2514325 . + . ID=gene2718;Name=SFV_RS13660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13660;old_locus_tag=SFV_2454 NC_008258.1 Protein Homology CDS 2513927 2514325 . + 0 ID=cds2665;Parent=gene2718;Dbxref=Genbank:WP_000826511.1;Name=WP_000826511.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000826511.1;transl_table=11 NC_008258.1 RefSeq gene 2514377 2515792 . - . ID=gene2719;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=SFV_RS13665;old_locus_tag=SFV_2455 NC_008258.1 Protein Homology CDS 2514377 2515792 . - 0 ID=cds2666;Parent=gene2719;Dbxref=Genbank:WP_000695665.1;Name=WP_000695665.1;Note=catalyzes a two-step reaction%2C first charging an glutamate molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B contains discriminating and non-discriminating subtypes;gbkey=CDS;gene=gltX;product=glutamate--tRNA ligase;protein_id=WP_000695665.1;transl_table=11 NC_008258.1 RefSeq gene 2516051 2516126 . + . ID=gene2720;Name=SFV_RS13670;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS13670;old_locus_tag=SFV_2456 NC_008258.1 tRNAscan-SE tRNA 2516051 2516126 . + . ID=rna53;Parent=gene2720;anticodon=(pos:2516084..2516086);gbkey=tRNA;product=tRNA-Val NC_008258.1 tRNAscan-SE exon 2516051 2516126 . + . ID=id428;Parent=rna53;anticodon=(pos:2516084..2516086);gbkey=tRNA;product=tRNA-Val NC_008258.1 RefSeq repeat_region 2516170 2516361 . + . ID=id429;gbkey=repeat_region NC_008258.1 RefSeq gene 2516170 2516245 . + . ID=gene2721;Name=SFV_RS13675;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS13675;old_locus_tag=SFV_2457 NC_008258.1 tRNAscan-SE tRNA 2516170 2516245 . + . ID=rna54;Parent=gene2721;anticodon=(pos:2516203..2516205);gbkey=tRNA;product=tRNA-Val NC_008258.1 tRNAscan-SE exon 2516170 2516245 . + . ID=id430;Parent=rna54;anticodon=(pos:2516203..2516205);gbkey=tRNA;product=tRNA-Val NC_008258.1 RefSeq gene 2516250 2516325 . + . ID=gene2722;Name=SFV_RS13680;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS13680;old_locus_tag=SFV_2458 NC_008258.1 tRNAscan-SE tRNA 2516250 2516325 . + . ID=rna55;Parent=gene2722;anticodon=(pos:2516283..2516285);gbkey=tRNA;product=tRNA-Lys NC_008258.1 tRNAscan-SE exon 2516250 2516325 . + . ID=id431;Parent=rna55;anticodon=(pos:2516283..2516285);gbkey=tRNA;product=tRNA-Lys NC_008258.1 RefSeq gene 2516601 2516942 . + . ID=gene2723;Name=SFV_RS13685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13685;old_locus_tag=SFV_2459 NC_008258.1 Protein Homology CDS 2516601 2516942 . + 0 ID=cds2667;Parent=gene2723;Dbxref=Genbank:WP_000201413.1;Name=WP_000201413.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000201413.1;transl_table=11 NC_008258.1 RefSeq gene 2516933 2517859 . - . ID=gene2724;Name=SFV_RS13690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13690;old_locus_tag=SFV_2460 NC_008258.1 Protein Homology CDS 2516933 2517859 . - 0 ID=cds2668;Parent=gene2724;Dbxref=Genbank:WP_001109794.1;Name=WP_001109794.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001109794.1;transl_table=11 NC_008258.1 RefSeq gene 2517949 2518947 . + . ID=gene2725;Name=SFV_RS13695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13695;old_locus_tag=SFV_2461 NC_008258.1 Protein Homology CDS 2517949 2518947 . + 0 ID=cds2669;Parent=gene2725;Dbxref=Genbank:WP_000765614.1;Name=WP_000765614.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000765614.1;transl_table=11 NC_008258.1 RefSeq gene 2518944 2519162 . - . ID=gene2726;Name=SFV_RS13700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13700;old_locus_tag=SFV_2462 NC_008258.1 Protein Homology CDS 2518944 2519162 . - 0 ID=cds2670;Parent=gene2726;Dbxref=Genbank:WP_000410201.1;Name=WP_000410201.1;gbkey=CDS;product=DUF3820 domain-containing protein;protein_id=WP_000410201.1;transl_table=11 NC_008258.1 RefSeq gene 2519164 2521179 . - . ID=gene2727;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=SFV_RS13705;old_locus_tag=SFV_2463 NC_008258.1 Protein Homology CDS 2519164 2521179 . - 0 ID=cds2671;Parent=gene2727;Dbxref=Genbank:WP_000443652.1;Name=WP_000443652.1;Note=this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction%3B essential for DNA replication and repair of damaged DNA%3B similar to ligase LigB;gbkey=CDS;gene=ligA;product=DNA ligase;protein_id=WP_000443652.1;transl_table=11 NC_008258.1 RefSeq gene 2521250 2522236 . - . ID=gene2728;Name=SFV_RS13710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13710;old_locus_tag=SFV_2464 NC_008258.1 Protein Homology CDS 2521250 2522236 . - 0 ID=cds2672;Parent=gene2728;Dbxref=Genbank:WP_001297862.1;Name=WP_001297862.1;Note=interacts with cell division protein FitsZ and may be required to anchor septal ring structure;gbkey=CDS;product=Cell division protein ZipA homolog;protein_id=WP_001297862.1;transl_table=11 NC_008258.1 RefSeq gene 2522466 2523227 . + . ID=gene2729;Name=SFV_RS13715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13715;old_locus_tag=SFV_2465 NC_008258.1 Protein Homology CDS 2522466 2523227 . + 0 ID=cds2673;Parent=gene2729;Dbxref=Genbank:WP_000254830.1;Name=WP_000254830.1;gbkey=CDS;product=sulfate transporter CysZ;protein_id=WP_000254830.1;transl_table=11 NC_008258.1 RefSeq gene 2523412 2524383 . + . ID=gene2730;Name=SFV_RS13720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13720;old_locus_tag=SFV_2466 NC_008258.1 Protein Homology CDS 2523412 2524383 . + 0 ID=cds2674;Parent=gene2730;Dbxref=Genbank:WP_000034406.1;Name=WP_000034406.1;gbkey=CDS;product=cysteine synthase A;protein_id=WP_000034406.1;transl_table=11 NC_008258.1 RefSeq gene 2524767 2525024 . + . ID=gene2731;Name=SFV_RS13725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13725;old_locus_tag=SFV_2467 NC_008258.1 Protein Homology CDS 2524767 2525024 . + 0 ID=cds2675;Parent=gene2731;Dbxref=Genbank:WP_000487600.1;Name=WP_000487600.1;gbkey=CDS;product=phosphocarrier protein HPr;protein_id=WP_000487600.1;transl_table=11 NC_008258.1 RefSeq gene 2525069 2526796 . + . ID=gene2732;Name=SFV_RS13730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13730;old_locus_tag=SFV_2468 NC_008258.1 Protein Homology CDS 2525069 2526796 . + 0 ID=cds2676;Parent=gene2732;Dbxref=Genbank:WP_000623136.1;Name=WP_000623136.1;Note=Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system;gbkey=CDS;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=WP_000623136.1;transl_table=11 NC_008258.1 RefSeq gene 2526837 2527346 . + . ID=gene2733;Name=SFV_RS13735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13735;old_locus_tag=SFV_2469 NC_008258.1 Protein Homology CDS 2526837 2527346 . + 0 ID=cds2677;Parent=gene2733;Dbxref=Genbank:WP_000522247.1;Name=WP_000522247.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=glucose-specific phosphotransferase enzyme IIA component;protein_id=WP_000522247.1;transl_table=11 NC_008258.1 RefSeq gene 2527388 2528239 . - . ID=gene2734;Name=pdxK;gbkey=Gene;gene=pdxK;gene_biotype=protein_coding;locus_tag=SFV_RS13740;old_locus_tag=SFV_2470 NC_008258.1 Protein Homology CDS 2527388 2528239 . - 0 ID=cds2678;Parent=gene2734;Dbxref=Genbank:WP_000096654.1;Name=WP_000096654.1;Note=catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal;gbkey=CDS;gene=pdxK;product=hydroxymethylpyrimidine kinase;protein_id=WP_000096654.1;transl_table=11 NC_008258.1 RefSeq gene 2528344 2528718 . + . ID=gene2735;Name=SFV_RS13745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13745;old_locus_tag=SFV_2471 NC_008258.1 Protein Homology CDS 2528344 2528718 . + 0 ID=cds2679;Parent=gene2735;Dbxref=Genbank:WP_000719924.1;Name=WP_000719924.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000719924.1;transl_table=11 NC_008258.1 RefSeq gene 2528751 2529474 . + . ID=gene2736;Name=SFV_RS13750;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13750;pseudo=true NC_008258.1 Protein Homology CDS 2528751 2529474 . + 0 ID=cds2680;Parent=gene2736;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2529678 2530589 . - . ID=gene2737;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=SFV_RS13755;old_locus_tag=SFV_2474 NC_008258.1 Protein Homology CDS 2529678 2530589 . - 0 ID=cds2681;Parent=gene2737;Dbxref=Genbank:WP_005063508.1;Name=WP_005063508.1;Note=catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide;gbkey=CDS;gene=cysM;product=cysteine synthase B;protein_id=WP_005063508.1;transl_table=11 NC_008258.1 RefSeq gene 2530723 2531820 . - . ID=gene2738;Name=SFV_RS13760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13760;old_locus_tag=SFV_2475 NC_008258.1 Protein Homology CDS 2530723 2531820 . - 0 ID=cds2682;Parent=gene2738;Dbxref=Genbank:WP_000021054.1;Name=WP_000021054.1;gbkey=CDS;product=sulfate/thiosulfate import ATP-binding protein CysA;protein_id=WP_000021054.1;transl_table=11 NC_008258.1 RefSeq gene 2531810 2532685 . - . ID=gene2739;Name=cysW;gbkey=Gene;gene=cysW;gene_biotype=protein_coding;locus_tag=SFV_RS13765;old_locus_tag=SFV_2476 NC_008258.1 Protein Homology CDS 2531810 2532685 . - 0 ID=cds2683;Parent=gene2739;Dbxref=Genbank:WP_000852686.1;Name=WP_000852686.1;Note=Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import;gbkey=CDS;gene=cysW;product=sulfate ABC transporter permease;protein_id=WP_000852686.1;transl_table=11 NC_008258.1 RefSeq gene 2532685 2533518 . - . ID=gene2740;Name=SFV_RS13770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13770;old_locus_tag=SFV_2477 NC_008258.1 Protein Homology CDS 2532685 2533518 . - 0 ID=cds2684;Parent=gene2740;Dbxref=Genbank:WP_000458420.1;Name=WP_000458420.1;gbkey=CDS;product=sulfate/thiosulfate transporter subunit;protein_id=WP_000458420.1;transl_table=11 NC_008258.1 RefSeq gene 2533518 2534534 . - . ID=gene2741;Name=SFV_RS13775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13775;old_locus_tag=SFV_2478 NC_008258.1 Protein Homology CDS 2533518 2534534 . - 0 ID=cds2685;Parent=gene2741;Dbxref=Genbank:WP_000290222.1;Name=WP_000290222.1;gbkey=CDS;product=thiosulfate transporter subunit;protein_id=WP_000290222.1;transl_table=11 NC_008258.1 RefSeq gene 2534838 2535629 . - . ID=gene2742;Name=SFV_RS13780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13780;old_locus_tag=SFV_2479 NC_008258.1 Protein Homology CDS 2534838 2535629 . - 0 ID=cds2686;Parent=gene2742;Dbxref=Genbank:WP_000517441.1;Name=WP_000517441.1;gbkey=CDS;product=short-chain dehydrogenase;protein_id=WP_000517441.1;transl_table=11 NC_008258.1 RefSeq gene 2535758 2536616 . - . ID=gene2743;Name=SFV_RS13785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13785;old_locus_tag=SFV_2480;pseudo=true NC_008258.1 Protein Homology CDS 2535758 2536616 . - 0 ID=cds2687;Parent=gene2743;Note=repressor for murPQ%3B N-acetylmuramic acid 6-phosphate inducible;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator MurR;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2536780 2537676 . + . ID=gene2744;Name=SFV_RS13790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13790;old_locus_tag=SFV_2481 NC_008258.1 Protein Homology CDS 2536780 2537676 . + 0 ID=cds2688;Parent=gene2744;Dbxref=Genbank:WP_001175640.1;Name=WP_001175640.1;Note=catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate%3B involved in MurNAc dissimilation pathway;gbkey=CDS;product=N-acetylmuramic acid 6-phosphate etherase;protein_id=WP_001175640.1;transl_table=11 NC_008258.1 RefSeq gene 2537680 2539104 . + . ID=gene2745;Name=murP;gbkey=Gene;gene=murP;gene_biotype=protein_coding;gene_synonym=yfeV;locus_tag=SFV_RS13795;old_locus_tag=SFV_2482 NC_008258.1 Protein Homology CDS 2537680 2539104 . + 0 ID=cds2689;Parent=gene2745;Dbxref=Genbank:WP_001040474.1;Name=WP_001040474.1;Note=belongs to PEP-dependent PTS system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel%3B requires crr-encoded enzyme IIA-glucose component;gbkey=CDS;gene=murP;product=PTS N-acetylmuramic acid transporter subunit IIBC;protein_id=WP_001040474.1;transl_table=11 NC_008258.1 RefSeq gene 2539284 2540183 . - . ID=gene2746;Name=SFV_RS13800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13800;old_locus_tag=SFV_2483 NC_008258.1 Protein Homology CDS 2539284 2540183 . - 0 ID=cds2690;Parent=gene2746;Dbxref=Genbank:WP_005047153.1;Name=WP_005047153.1;gbkey=CDS;product=deferrochelatase/peroxidase YfeX;protein_id=WP_005047153.1;transl_table=11 NC_008258.1 RefSeq gene 2540279 2540854 . - . ID=gene2747;Name=SFV_RS13805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13805;old_locus_tag=SFV_2484 NC_008258.1 Protein Homology CDS 2540279 2540854 . - 0 ID=cds2691;Parent=gene2747;Dbxref=Genbank:WP_000838944.1;Name=WP_000838944.1;gbkey=CDS;product=RpoE-regulated lipoprotein;protein_id=WP_000838944.1;transl_table=11 NC_008258.1 RefSeq gene 2540915 2541364 . - . ID=gene2748;Name=SFV_RS13810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13810;old_locus_tag=SFV_2485 NC_008258.1 Protein Homology CDS 2540915 2541364 . - 0 ID=cds2692;Parent=gene2748;Dbxref=Genbank:WP_001399260.1;Name=WP_001399260.1;gbkey=CDS;product=membrane protein;protein_id=WP_001399260.1;transl_table=11 NC_008258.1 RefSeq gene 2541351 2541776 . - . ID=gene2749;Name=SFV_RS13815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13815 NC_008258.1 Protein Homology CDS 2541351 2541776 . - 0 ID=cds2693;Parent=gene2749;Dbxref=Genbank:WP_000406000.1;Name=WP_000406000.1;gbkey=CDS;product=acetyltransferase YpeA;protein_id=WP_000406000.1;transl_table=11 NC_008258.1 RefSeq gene 2541990 2542859 . + . ID=gene2750;Name=SFV_RS13820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13820;old_locus_tag=SFV_2487 NC_008258.1 Protein Homology CDS 2541990 2542859 . + 0 ID=cds2694;Parent=gene2750;Dbxref=Genbank:WP_000102891.1;Name=WP_000102891.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_000102891.1;transl_table=11 NC_008258.1 RefSeq gene 2542863 2543762 . + . ID=gene2751;Name=SFV_RS13825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13825;old_locus_tag=SFV_2488 NC_008258.1 Protein Homology CDS 2542863 2543762 . + 0 ID=cds2695;Parent=gene2751;Dbxref=Genbank:WP_000801376.1;Name=WP_000801376.1;Note=catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_000801376.1;transl_table=11 NC_008258.1 RefSeq gene 2543768 2544820 . - . ID=gene2752;Name=SFV_RS13830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13830;old_locus_tag=SFV_2489 NC_008258.1 Protein Homology CDS 2543768 2544820 . - 0 ID=cds2696;Parent=gene2752;Dbxref=Genbank:WP_000753685.1;Name=WP_000753685.1;Note=activates the transcription of the ethanolamine utilization operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000753685.1;transl_table=11 NC_008258.1 RefSeq gene 2544866 2545366 . - . ID=gene2753;Name=SFV_RS13835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13835;old_locus_tag=SFV_2490 NC_008258.1 Protein Homology CDS 2544866 2545366 . - 0 ID=cds2697;Parent=gene2753;Dbxref=Genbank:WP_005047162.1;Name=WP_005047162.1;Note=ethanolamine utilization protein%3B involved in the degredation of ethanolamine;gbkey=CDS;product=carboxysome shell protein;protein_id=WP_005047162.1;transl_table=11 NC_008258.1 RefSeq gene 2545379 2546038 . - . ID=gene2754;Name=SFV_RS13840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13840;old_locus_tag=SFV_2491 NC_008258.1 Protein Homology CDS 2545379 2546038 . - 0 ID=cds2698;Parent=gene2754;Dbxref=Genbank:WP_001111038.1;Name=WP_001111038.1;Note=carboxysome structural protein involved in ethanolamine utilization;gbkey=CDS;product=ethanolamine utilization protein EutL;protein_id=WP_001111038.1;transl_table=11 NC_008258.1 RefSeq gene 2547391 2547963 . + . ID=gene2755;Name=SFV_RS13845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13845 NC_008258.1 Protein Homology CDS 2547391 2547963 . + 0 ID=cds2699;Parent=gene2755;Dbxref=Genbank:WP_001222802.1;Name=WP_001222802.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001222802.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2547938 2548712 . + . ID=id432;gbkey=repeat_region NC_008258.1 RefSeq region 2547942 2548708 . + . ID=id433;gbkey=mobile_element NC_008258.1 RefSeq gene 2548191 2548693 . + . ID=gene2756;Name=SFV_RS13850;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13850;old_locus_tag=SFV_2493;pseudo=true NC_008258.1 Protein Homology CDS 2548191 2548693 . + 0 ID=cds2700;Parent=gene2756;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2549507 2549901 . + . ID=gene2757;Name=SFV_RS13860;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13860;pseudo=true NC_008258.1 Protein Homology CDS 2549507 2549901 . + 0 ID=cds2701;Parent=gene2757;exception=annotated by transcript or proteomic data;gbkey=CDS;product=HNH endonuclease;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2549919 2550182 . + . ID=gene2758;Name=SFV_RS13865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13865;old_locus_tag=SFV_2495 NC_008258.1 Protein Homology CDS 2549919 2550182 . + 0 ID=cds2702;Parent=gene2758;Dbxref=Genbank:WP_000555795.1;Name=WP_000555795.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000555795.1;transl_table=11 NC_008258.1 RefSeq gene 2550205 2550747 . + . ID=gene2759;Name=SFV_RS13870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13870;old_locus_tag=SFV_2496 NC_008258.1 Protein Homology CDS 2550205 2550747 . + 0 ID=cds2703;Parent=gene2759;Dbxref=Genbank:WP_000338538.1;Name=WP_000338538.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000338538.1;transl_table=11 NC_008258.1 RefSeq gene 2550886 2551173 . + . ID=gene2760;Name=SFV_RS13875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13875 NC_008258.1 Protein Homology CDS 2550886 2551173 . + 0 ID=cds2704;Parent=gene2760;Dbxref=Genbank:WP_001373377.1;Name=WP_001373377.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001373377.1;transl_table=11 NC_008258.1 RefSeq gene 2551212 2551418 . + . ID=gene2761;Name=SFV_RS13880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13880;old_locus_tag=SFV_2497 NC_008258.1 Protein Homology CDS 2551212 2551418 . + 0 ID=cds2705;Parent=gene2761;Dbxref=Genbank:WP_000806589.1;Name=WP_000806589.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000806589.1;transl_table=11 NC_008258.1 RefSeq gene 2551976 2552215 . + . ID=gene2762;Name=SFV_RS13885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13885 NC_008258.1 Protein Homology CDS 2551976 2552215 . + 0 ID=cds2706;Parent=gene2762;Dbxref=Genbank:WP_001407799.1;Name=WP_001407799.1;gbkey=CDS;product=glutamate decarboxylase A subunit;protein_id=WP_001407799.1;transl_table=11 NC_008258.1 RefSeq gene 2552235 2552474 . + . ID=gene2763;Name=SFV_RS13890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13890 NC_008258.1 GeneMarkS+ CDS 2552235 2552474 . + 0 ID=cds2707;Parent=gene2763;Dbxref=Genbank:WP_024260292.1;Name=WP_024260292.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260292.1;transl_table=11 NC_008258.1 RefSeq gene 2552467 2553927 . + . ID=gene2764;Name=SFV_RS13895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13895;old_locus_tag=SFV_2499 NC_008258.1 Protein Homology CDS 2552467 2553927 . + 0 ID=cds2708;Parent=gene2764;Dbxref=Genbank:WP_000063570.1;Name=WP_000063570.1;gbkey=CDS;product=amino acid transporter;protein_id=WP_000063570.1;transl_table=11 NC_008258.1 RefSeq gene 2553961 2554770 . + . ID=gene2765;Name=SFV_RS13900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13900;old_locus_tag=SFV_2500 NC_008258.1 Protein Homology CDS 2553961 2554770 . + 0 ID=cds2709;Parent=gene2765;Dbxref=Genbank:WP_000490355.1;Name=WP_000490355.1;gbkey=CDS;product=glutamate racemase;protein_id=WP_000490355.1;transl_table=11 NC_008258.1 RefSeq region 2554880 2555607 . - . ID=id434;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2554889 2555104 . - . ID=gene2766;Name=SFV_RS13905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13905 NC_008258.1 Protein Homology CDS 2554889 2555104 . - 0 ID=cds2710;Parent=gene2766;Dbxref=Genbank:WP_001533184.1;Name=WP_001533184.1;gbkey=CDS;product=transposase;protein_id=WP_001533184.1;transl_table=11 NC_008258.1 RefSeq gene 2555120 2555284 . - . ID=gene2767;Name=SFV_RS13910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13910;partial=true;pseudo=true;start_range=.,2555120 NC_008258.1 Protein Homology CDS 2555120 2555284 . - 0 ID=cds2711;Parent=gene2767;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,2555120;transl_table=11 NC_008258.1 RefSeq gene 2555311 2555475 . - . ID=gene2768;Name=SFV_RS13915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13915 NC_008258.1 Protein Homology CDS 2555311 2555475 . - 0 ID=cds2712;Parent=gene2768;Dbxref=Genbank:WP_032145138.1;Name=WP_032145138.1;gbkey=CDS;product=transposase;protein_id=WP_032145138.1;transl_table=11 NC_008258.1 RefSeq gene 2555479 2555693 . + . ID=gene2769;Name=SFV_RS24515;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24515;pseudo=true NC_008258.1 Protein Homology CDS 2555479 2555693 . + 0 ID=cds2713;Parent=gene2769;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:2555545..2555547%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 2555606 2556939 . + . ID=id435;gbkey=repeat_region NC_008258.1 RefSeq region 2555607 2556937 . - . ID=id436;gbkey=mobile_element NC_008258.1 RefSeq gene 2555618 2556523 . - . ID=gene2770;Name=SFV_RS24520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24520;old_locus_tag=SFV_2502 NC_008258.1 Protein Homology CDS 2555618 2556523 . - 0 ID=cds2714;Parent=gene2770;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 2556481 2556846 . - . ID=gene2771;Name=SFV_RS13935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13935;old_locus_tag=SFV_2503 NC_008258.1 Protein Homology CDS 2556481 2556846 . - 0 ID=cds2715;Parent=gene2771;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 2557439 2558812 . - . ID=gene2772;Name=eutA;gbkey=Gene;gene=eutA;gene_biotype=protein_coding;locus_tag=SFV_RS13940 NC_008258.1 Protein Homology CDS 2557439 2558812 . - 0 ID=cds2716;Parent=gene2772;Dbxref=Genbank:WP_000733911.1;Name=WP_000733911.1;Note=ethanolamine utilization protein EutA;gbkey=CDS;gene=eutA;product=ethanolamine utilization protein EutA;protein_id=WP_000733911.1;transl_table=11 NC_008258.1 RefSeq gene 2558787 2559266 . - . ID=gene2773;Name=SFV_RS13950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13950;old_locus_tag=SFV_2505 NC_008258.1 Protein Homology CDS 2558787 2559266 . - 0 ID=cds2717;Parent=gene2773;Dbxref=Genbank:WP_000820760.1;Name=WP_000820760.1;gbkey=CDS;product=ethanolamine utilization protein EutP;protein_id=WP_000820760.1;transl_table=11 NC_008258.1 RefSeq gene 2559279 2559614 . - . ID=gene2774;Name=SFV_RS13955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13955;old_locus_tag=SFV_2506 NC_008258.1 Protein Homology CDS 2559279 2559614 . - 0 ID=cds2718;Parent=gene2774;Dbxref=Genbank:WP_000356956.1;Name=WP_000356956.1;Note=ethanolamine utilization protein%3B involved in the degredation of ethanolamine;gbkey=CDS;product=ethanolamine utilization protein EutS;protein_id=WP_000356956.1;transl_table=11 NC_008258.1 RefSeq gene 2559907 2562186 . - . ID=gene2775;Name=SFV_RS13960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13960;old_locus_tag=SFV_2507 NC_008258.1 Protein Homology CDS 2559907 2562186 . - 0 ID=cds2719;Parent=gene2775;Dbxref=Genbank:WP_000342656.1;Name=WP_000342656.1;Note=NADP-dependent%3B catalyzes the oxidative decarboxylation of malate to form pyruvate%3B decarboxylates oxaloacetate;gbkey=CDS;product=malic enzyme;protein_id=WP_000342656.1;transl_table=11 NC_008258.1 RefSeq gene 2562475 2563425 . + . ID=gene2776;Name=SFV_RS13965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13965;old_locus_tag=SFV_2508 NC_008258.1 Protein Homology CDS 2562475 2563425 . + 0 ID=cds2720;Parent=gene2776;Dbxref=Genbank:WP_001003693.1;Name=WP_001003693.1;gbkey=CDS;product=transaldolase A;protein_id=WP_001003693.1;transl_table=11 NC_008258.1 RefSeq gene 2563445 2565448 . + . ID=gene2777;Name=SFV_RS13970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13970;old_locus_tag=SFV_2509 NC_008258.1 Protein Homology CDS 2563445 2565448 . + 0 ID=cds2721;Parent=gene2777;Dbxref=Genbank:WP_000087274.1;Name=WP_000087274.1;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;gbkey=CDS;product=transketolase;protein_id=WP_000087274.1;transl_table=11 NC_008258.1 RefSeq gene 2565551 2566594 . - . ID=gene2778;Name=SFV_RS13975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13975;old_locus_tag=SFV_2510 NC_008258.1 Protein Homology CDS 2565551 2566594 . - 0 ID=cds2722;Parent=gene2778;Dbxref=Genbank:WP_001270509.1;Name=WP_001270509.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001270509.1;transl_table=11 NC_008258.1 RefSeq gene 2566720 2567295 . - . ID=gene2779;Name=SFV_RS13980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13980;old_locus_tag=SFV_2511 NC_008258.1 Protein Homology CDS 2566720 2567295 . - 0 ID=cds2723;Parent=gene2779;Dbxref=Genbank:WP_001325569.1;Name=WP_001325569.1;gbkey=CDS;product=GDP-mannose pyrophosphatase NudK;protein_id=WP_001325569.1;transl_table=11 NC_008258.1 RefSeq gene 2567363 2569342 . - . ID=gene2780;Name=SFV_RS13985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13985;old_locus_tag=SFV_2512 NC_008258.1 Protein Homology CDS 2567363 2569342 . - 0 ID=cds2724;Parent=gene2780;Dbxref=Genbank:WP_001078886.1;Name=WP_001078886.1;Note=unknown function%3B in E. coli the aegA gene is regulated by Fnr%2C NarXL%2C and NarQ (but not ArcA)%2C induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic);gbkey=CDS;product=oxidoreductase Fe-S-binding subunit;protein_id=WP_001078886.1;transl_table=11 NC_008258.1 RefSeq gene 2569548 2571265 . + . ID=gene2781;Name=SFV_RS13990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS13990;pseudo=true NC_008258.1 Protein Homology CDS 2569548 2571265 . + 0 ID=cds2725;Parent=gene2781;exception=annotated by transcript or proteomic data;gbkey=CDS;product=nitrate/nitrite sensor protein NarQ;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2571467 2574580 . + . ID=gene2782;Name=SFV_RS13995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS13995;old_locus_tag=SFV_2514 NC_008258.1 Protein Homology CDS 2571467 2574580 . + 0 ID=cds2726;Parent=gene2782;Dbxref=Genbank:WP_001273176.1;Name=WP_001273176.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_001273176.1;transl_table=11 NC_008258.1 RefSeq gene 2574667 2574846 . + . ID=gene2783;Name=SFV_RS14000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14000 NC_008258.1 Protein Homology CDS 2574667 2574846 . + 0 ID=cds2727;Parent=gene2783;Dbxref=Genbank:WP_001308835.1;Name=WP_001308835.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001308835.1;transl_table=11 NC_008258.1 RefSeq gene 2575119 2575475 . + . ID=gene2784;Name=SFV_RS14005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14005;old_locus_tag=SFV_2515 NC_008258.1 Protein Homology CDS 2575119 2575475 . + 0 ID=cds2728;Parent=gene2784;Dbxref=Genbank:WP_000258247.1;Name=WP_000258247.1;gbkey=CDS;product=reductase;protein_id=WP_000258247.1;transl_table=11 NC_008258.1 RefSeq gene 2575479 2576606 . + . ID=gene2785;Name=SFV_RS14010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14010;old_locus_tag=SFV_2516 NC_008258.1 Protein Homology CDS 2575479 2576606 . + 0 ID=cds2729;Parent=gene2785;Dbxref=Genbank:WP_001277831.1;Name=WP_001277831.1;gbkey=CDS;product=succinyl-diaminopimelate desuccinylase;protein_id=WP_001277831.1;transl_table=11 NC_008258.1 RefSeq gene 2576634 2576834 . + . ID=gene2786;Name=SFV_RS14015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14015;old_locus_tag=SFV_2517 NC_008258.1 Protein Homology CDS 2576634 2576834 . + 0 ID=cds2730;Parent=gene2786;Dbxref=Genbank:WP_000383836.1;Name=WP_000383836.1;gbkey=CDS;product=membrane protein;protein_id=WP_000383836.1;transl_table=11 NC_008258.1 RefSeq gene 2576944 2577642 . - . ID=gene2787;Name=SFV_RS14020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14020;old_locus_tag=SFV_2518 NC_008258.1 Protein Homology CDS 2576944 2577642 . - 0 ID=cds2731;Parent=gene2787;Dbxref=Genbank:WP_000679818.1;Name=WP_000679818.1;gbkey=CDS;product=hydrolase;protein_id=WP_000679818.1;transl_table=11 NC_008258.1 RefSeq gene 2577716 2579731 . - . ID=gene2788;Name=SFV_RS14025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14025;old_locus_tag=SFV_2519 NC_008258.1 Protein Homology CDS 2577716 2579731 . - 0 ID=cds2732;Parent=gene2788;Dbxref=Genbank:WP_000829377.1;Name=WP_000829377.1;Note=cetylates the wobble base C34 of the elongation-specific methionine tRNA;gbkey=CDS;product=tRNA(Met) cytidine acetyltransferase TmcA;protein_id=WP_000829377.1;transl_table=11 NC_008258.1 RefSeq gene 2579746 2580609 . - . ID=gene2789;Name=SFV_RS14030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14030;old_locus_tag=SFV_2520 NC_008258.1 Protein Homology CDS 2579746 2580609 . - 0 ID=cds2733;Parent=gene2789;Dbxref=Genbank:WP_001267498.1;Name=WP_001267498.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001267498.1;transl_table=11 NC_008258.1 RefSeq gene 2580777 2581490 . - . ID=gene2790;Name=SFV_RS14035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14035;old_locus_tag=SFV_2521 NC_008258.1 Protein Homology CDS 2580777 2581490 . - 0 ID=cds2734;Parent=gene2790;Dbxref=Genbank:WP_001295467.1;Name=WP_001295467.1;Note=catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis%3B SAICAR synthase;gbkey=CDS;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;protein_id=WP_001295467.1;transl_table=11 NC_008258.1 RefSeq gene 2581562 2581792 . + . ID=gene2791;Name=SFV_RS14040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14040 NC_008258.1 Protein Homology CDS 2581562 2581792 . + 0 ID=cds2735;Parent=gene2791;Dbxref=Genbank:WP_001349976.1;Name=WP_001349976.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001349976.1;transl_table=11 NC_008258.1 RefSeq gene 2581703 2582737 . - . ID=gene2792;Name=SFV_RS14045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14045;old_locus_tag=SFV_2522 NC_008258.1 Protein Homology CDS 2581703 2582737 . - 0 ID=cds2736;Parent=gene2792;Dbxref=Genbank:WP_001297320.1;Name=WP_001297320.1;gbkey=CDS;product=outer membrane protein assembly factor BamC;protein_id=WP_001297320.1;transl_table=11 NC_008258.1 RefSeq gene 2582754 2583632 . - . ID=gene2793;Name=SFV_RS14050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14050;old_locus_tag=SFV_2523 NC_008258.1 Protein Homology CDS 2582754 2583632 . - 0 ID=cds2737;Parent=gene2793;Dbxref=Genbank:WP_005105684.1;Name=WP_005105684.1;gbkey=CDS;product=4-hydroxy-tetrahydrodipicolinate synthase;protein_id=WP_005105684.1;transl_table=11 NC_008258.1 RefSeq gene 2583778 2584350 . + . ID=gene2794;Name=gcvR;gbkey=Gene;gene=gcvR;gene_biotype=protein_coding;locus_tag=SFV_RS14055;old_locus_tag=SFV_2524 NC_008258.1 Protein Homology CDS 2583778 2584350 . + 0 ID=cds2738;Parent=gene2794;Dbxref=Genbank:WP_000176187.1;Name=WP_000176187.1;Note=negative transcriptional regulator of the gcvTHP operon;gbkey=CDS;gene=gcvR;product=glycine cleavage system transcriptional regulator;protein_id=WP_000176187.1;transl_table=11 NC_008258.1 RefSeq gene 2584350 2584820 . + . ID=gene2795;Name=bcp;gbkey=Gene;gene=bcp;gene_biotype=protein_coding;locus_tag=SFV_RS14060;old_locus_tag=SFV_2525 NC_008258.1 Protein Homology CDS 2584350 2584820 . + 0 ID=cds2739;Parent=gene2795;Dbxref=Genbank:WP_001068682.1;Name=WP_001068682.1;Note=bacterioferritin comigratory protein%3B thiol peroxidase%3B thioredoxin-dependent%3B hydroperoxide peroxidase%3B in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide%3B contains an active site cysteine;gbkey=CDS;gene=bcp;product=peroxiredoxin;protein_id=WP_001068682.1;transl_table=11 NC_008258.1 RefSeq gene 2585073 2585690 . + . ID=gene2796;Name=SFV_RS14065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14065;old_locus_tag=SFV_2526 NC_008258.1 Protein Homology CDS 2585073 2585690 . + 0 ID=cds2740;Parent=gene2796;Dbxref=Genbank:WP_005047210.1;Name=WP_005047210.1;gbkey=CDS;product=hydrogenase-4 F-S subunit;protein_id=WP_005047210.1;transl_table=11 NC_008258.1 RefSeq gene 2585690 2586361 . + . ID=gene2797;Name=SFV_RS14070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14070 NC_008258.1 Protein Homology CDS 2585690 2586361 . + 0 ID=cds2741;Parent=gene2797;Dbxref=Genbank:WP_000339447.1;Name=WP_000339447.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000339447.1;transl_table=11 NC_008258.1 RefSeq gene 2586316 2587707 . + . ID=gene2798;Name=SFV_RS14075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14075 NC_008258.1 Protein Homology CDS 2586316 2587707 . + 0 ID=cds2742;Parent=gene2798;Dbxref=Genbank:WP_044024054.1;Name=WP_044024054.1;gbkey=CDS;product=hydantoin racemase;protein_id=WP_044024054.1;transl_table=11 NC_008258.1 RefSeq gene 2587718 2588665 . + . ID=gene2799;Name=hycD;gbkey=Gene;gene=hycD;gene_biotype=protein_coding;locus_tag=SFV_RS14080;old_locus_tag=SFV_2528 NC_008258.1 Protein Homology CDS 2587718 2588665 . + 0 ID=cds2743;Parent=gene2799;Dbxref=Genbank:WP_005105685.1;Name=WP_005105685.1;Note=formate hydrogenlyase subunit 4%3B HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hycD;product=hydrogenase 3 membrane subunit;protein_id=WP_005105685.1;transl_table=11 NC_008258.1 RefSeq gene 2588682 2590121 . + . ID=gene2800;Name=SFV_RS14085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14085;old_locus_tag=SFV_2529 NC_008258.1 Protein Homology CDS 2588682 2590121 . + 0 ID=cds2744;Parent=gene2800;Dbxref=Genbank:WP_000429124.1;Name=WP_000429124.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000429124.1;transl_table=11 NC_008258.1 RefSeq gene 2590133 2590783 . + . ID=gene2801;Name=hyfE;gbkey=Gene;gene=hyfE;gene_biotype=protein_coding;locus_tag=SFV_RS14090;old_locus_tag=SFV_2530 NC_008258.1 Protein Homology CDS 2590133 2590783 . + 0 ID=cds2745;Parent=gene2801;Dbxref=Genbank:WP_000147987.1;Name=WP_000147987.1;Note=interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hyfE;product=hydrogenase-4 component E;protein_id=WP_000147987.1;transl_table=11 NC_008258.1 RefSeq gene 2590788 2592380 . + . ID=gene2802;Name=SFV_RS14095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14095;old_locus_tag=SFV_2531 NC_008258.1 Protein Homology CDS 2590788 2592380 . + 0 ID=cds2746;Parent=gene2802;Dbxref=Genbank:WP_000122559.1;Name=WP_000122559.1;gbkey=CDS;product=hydrogenase;protein_id=WP_000122559.1;transl_table=11 NC_008258.1 RefSeq gene 2592370 2594084 . + . ID=gene2803;Name=SFV_RS14100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14100;pseudo=true NC_008258.1 Protein Homology CDS 2592370 2594084 . + 0 ID=cds2747;Parent=gene2803;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2594094 2594639 . + . ID=gene2804;Name=SFV_RS14105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14105;old_locus_tag=SFV_2533 NC_008258.1 Protein Homology CDS 2594094 2594639 . + 0 ID=cds2748;Parent=gene2804;Dbxref=Genbank:WP_000916053.1;Name=WP_000916053.1;Note=electron transfer protein for hydrogenase-3%3B the formate hydrogenlyase complex comprises of a formate dehydrogenase%2C unidentified electron carriers and hydrogenase-3%3B in this non-energy conserving pathway%2C molecular hydrogen and carbodioxide are released from formate;gbkey=CDS;product=(4Fe-4S)-binding protein;protein_id=WP_000916053.1;transl_table=11 NC_008258.1 RefSeq gene 2594636 2595394 . + . ID=gene2805;Name=SFV_RS14110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14110;old_locus_tag=SFV_2534 NC_008258.1 Protein Homology CDS 2594636 2595394 . + 0 ID=cds2749;Parent=gene2805;Dbxref=Genbank:WP_000075574.1;Name=WP_000075574.1;gbkey=CDS;product=formate hydrogenlyase subunit 7;protein_id=WP_000075574.1;transl_table=11 NC_008258.1 RefSeq gene 2595387 2595800 . + . ID=gene2806;Name=SFV_RS14115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14115;old_locus_tag=SFV_2535 NC_008258.1 Protein Homology CDS 2595387 2595800 . + 0 ID=cds2750;Parent=gene2806;Dbxref=Genbank:WP_000133937.1;Name=WP_000133937.1;gbkey=CDS;product=formate hydrogenlyase maturation protein HycH;protein_id=WP_000133937.1;transl_table=11 NC_008258.1 RefSeq gene 2595830 2597842 . + . ID=gene2807;Name=SFV_RS14120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14120;old_locus_tag=SFV_2536 NC_008258.1 Protein Homology CDS 2595830 2597842 . + 0 ID=cds2751;Parent=gene2807;Dbxref=Genbank:WP_001251525.1;Name=WP_001251525.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001251525.1;transl_table=11 NC_008258.1 RefSeq gene 2597864 2598052 . + . ID=gene2808;Name=SFV_RS14125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14125 NC_008258.1 Protein Homology CDS 2597864 2598052 . + 0 ID=cds2752;Parent=gene2808;Dbxref=Genbank:WP_001244714.1;Name=WP_001244714.1;gbkey=CDS;product=formate transporter;protein_id=WP_001244714.1;transl_table=11 NC_008258.1 RefSeq gene 2598068 2598559 . + . ID=gene2809;Name=SFV_RS14130;end_range=2598559,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14130;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2598068 2598559 . + 0 ID=cds2753;Parent=gene2809;end_range=2598559,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=formate transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2598750 2599811 . - . ID=gene2810;Name=SFV_RS14135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14135;old_locus_tag=SFV_2538 NC_008258.1 Protein Homology CDS 2598750 2599811 . - 0 ID=cds2754;Parent=gene2810;Dbxref=Genbank:WP_000892049.1;Name=WP_000892049.1;gbkey=CDS;product=permease;protein_id=WP_000892049.1;transl_table=11 NC_008258.1 RefSeq gene 2600024 2601487 . + . ID=gene2811;Name=SFV_RS14140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14140;old_locus_tag=SFV_2539 NC_008258.1 Protein Homology CDS 2600024 2601487 . + 0 ID=cds2755;Parent=gene2811;Dbxref=Genbank:WP_000489667.1;Name=WP_000489667.1;gbkey=CDS;product=beta-barrel assembly-enhancing protease;protein_id=WP_000489667.1;transl_table=11 NC_008258.1 RefSeq gene 2601508 2601867 . + . ID=gene2812;Name=SFV_RS14145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14145;old_locus_tag=SFV_2540 NC_008258.1 Protein Homology CDS 2601508 2601867 . + 0 ID=cds2756;Parent=gene2812;Dbxref=Genbank:WP_000166448.1;Name=WP_000166448.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000166448.1;transl_table=11 NC_008258.1 RefSeq gene 2602000 2602677 . - . ID=gene2813;Name=SFV_RS14150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14150;old_locus_tag=SFV_2541 NC_008258.1 Protein Homology CDS 2602000 2602677 . - 0 ID=cds2757;Parent=gene2813;Dbxref=Genbank:WP_001302391.1;Name=WP_001302391.1;Note=controls initiation of DNA replication by inhibiting re-initiation of replication%2C promotes hydrolysis of DnaA-bound ATP;gbkey=CDS;product=DnaA regulatory inactivator Hda;protein_id=WP_001302391.1;transl_table=11 NC_008258.1 RefSeq gene 2602796 2604085 . - . ID=gene2814;Name=SFV_RS14155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14155;old_locus_tag=SFV_2542 NC_008258.1 Protein Homology CDS 2602796 2604085 . - 0 ID=cds2758;Parent=gene2814;Dbxref=Genbank:WP_005130140.1;Name=WP_005130140.1;gbkey=CDS;product=uracil permease;protein_id=WP_005130140.1;transl_table=11 NC_008258.1 RefSeq gene 2604171 2604797 . - . ID=gene2815;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=SFV_RS14160;old_locus_tag=SFV_2543 NC_008258.1 Protein Homology CDS 2604171 2604797 . - 0 ID=cds2759;Parent=gene2815;Dbxref=Genbank:WP_001295473.1;Name=WP_001295473.1;Note=Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate;gbkey=CDS;gene=upp;product=uracil phosphoribosyltransferase;protein_id=WP_001295473.1;transl_table=11 NC_008258.1 RefSeq gene 2605121 2606158 . + . ID=gene2816;Name=SFV_RS14165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14165;old_locus_tag=SFV_2544 NC_008258.1 Protein Homology CDS 2605121 2606158 . + 0 ID=cds2760;Parent=gene2816;Dbxref=Genbank:WP_001295474.1;Name=WP_001295474.1;Note=catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=WP_001295474.1;transl_table=11 NC_008258.1 RefSeq gene 2606158 2606796 . + . ID=gene2817;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=SFV_RS14170;old_locus_tag=SFV_2545 NC_008258.1 Protein Homology CDS 2606158 2606796 . + 0 ID=cds2761;Parent=gene2817;Dbxref=Genbank:WP_001028614.1;Name=WP_001028614.1;Note=glycinamide ribonucleotide transformylase%3B GAR Tfase%3B catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate%3B PurN requires formyl folate for the reaction unlike PurT which uses formate;gbkey=CDS;gene=purN;product=phosphoribosylglycinamide formyltransferase;protein_id=WP_001028614.1;transl_table=11 NC_008258.1 RefSeq gene 2606968 2609034 . + . ID=gene2818;Name=SFV_RS14175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14175;old_locus_tag=SFV_2546 NC_008258.1 Protein Homology CDS 2606968 2609034 . + 0 ID=cds2762;Parent=gene2818;Dbxref=Genbank:WP_000529559.1;Name=WP_000529559.1;gbkey=CDS;product=polyphosphate kinase;protein_id=WP_000529559.1;transl_table=11 NC_008258.1 RefSeq gene 2609039 2610580 . + . ID=gene2819;Name=SFV_RS14180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14180;old_locus_tag=SFV_2547 NC_008258.1 Protein Homology CDS 2609039 2610580 . + 0 ID=cds2763;Parent=gene2819;Dbxref=Genbank:WP_001121378.1;Name=WP_001121378.1;gbkey=CDS;product=exopolyphosphatase;protein_id=WP_001121378.1;transl_table=11 NC_008258.1 RefSeq gene 2610619 2611749 . - . ID=gene2820;Name=SFV_RS14185;end_range=2611749,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14185;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2610619 2611749 . - 0 ID=cds2764;Parent=gene2820;end_range=2611749,.;gbkey=CDS;partial=true;product=c-di-GMP phosphodiesterase;pseudo=true;transl_except=(pos:complement(2611618..2611620)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 2611727 2612995 . + . ID=id437;gbkey=repeat_region NC_008258.1 RefSeq region 2611730 2612992 . + . ID=id438;gbkey=mobile_element NC_008258.1 RefSeq gene 2611794 2612127 . + . ID=gene2821;Name=SFV_RS14190;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14190;old_locus_tag=SFV_2548;pseudo=true NC_008258.1 Protein Homology CDS 2611794 2612127 . + 0 ID=cds2765;Parent=gene2821;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2612237 2612950 . + . ID=gene2822;Name=SFV_RS14195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14195;old_locus_tag=SFV_2549 NC_008258.1 Protein Homology CDS 2612237 2612950 . + 0 ID=cds2766;Parent=gene2822;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq gene 2612989 2614128 . - . ID=gene2823;Name=SFV_RS14200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14200;partial=true;pseudo=true;start_range=.,2612989 NC_008258.1 Protein Homology CDS 2612989 2614128 . - 0 ID=cds2767;Parent=gene2823;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=c-di-GMP phosphodiesterase;pseudo=true;start_range=.,2612989;transl_table=11 NC_008258.1 RefSeq gene 2614310 2614462 . - . ID=gene2824;Name=SFV_RS14205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14205 NC_008258.1 Protein Homology CDS 2614310 2614462 . - 0 ID=cds2768;Parent=gene2824;Dbxref=Genbank:WP_000017552.1;Name=WP_000017552.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000017552.1;transl_table=11 NC_008258.1 RefSeq gene 2614480 2614671 . + . ID=gene2825;Name=SFV_RS14210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14210;old_locus_tag=SFV_2551 NC_008258.1 Protein Homology CDS 2614480 2614671 . + 0 ID=cds2769;Parent=gene2825;Dbxref=Genbank:WP_000076001.1;Name=WP_000076001.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000076001.1;transl_table=11 NC_008258.1 RefSeq gene 2614988 2615503 . + . ID=gene2826;Name=SFV_RS14215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14215;old_locus_tag=SFV_2552 NC_008258.1 Protein Homology CDS 2614988 2615503 . + 0 ID=cds2770;Parent=gene2826;Dbxref=Genbank:WP_005105690.1;Name=WP_005105690.1;gbkey=CDS;product=membrane protein;protein_id=WP_005105690.1;transl_table=11 NC_008258.1 RefSeq gene 2615519 2616058 . + . ID=gene2827;Name=SFV_RS14220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14220;old_locus_tag=SFV_2553 NC_008258.1 Protein Homology CDS 2615519 2616058 . + 0 ID=cds2771;Parent=gene2827;Dbxref=Genbank:WP_000755178.1;Name=WP_000755178.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000755178.1;transl_table=11 NC_008258.1 RefSeq gene 2616153 2617730 . - . ID=gene2828;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=SFV_RS14225;old_locus_tag=SFV_2554 NC_008258.1 Protein Homology CDS 2616153 2617730 . - 0 ID=cds2772;Parent=gene2828;Dbxref=Genbank:WP_000138257.1;Name=WP_000138257.1;Note=contains glutamine-hydrolyzing domain and glutamine amidotransferase%3B GMP-binding domain%3B functions to produce GMP from XMP in the IMP pathway;gbkey=CDS;gene=guaA;product=GMP synthase [glutamine-hydrolyzing];protein_id=WP_000138257.1;transl_table=11 NC_008258.1 RefSeq gene 2617799 2619265 . - . ID=gene2829;Name=SFV_RS14230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14230;old_locus_tag=SFV_2555 NC_008258.1 Protein Homology CDS 2617799 2619265 . - 0 ID=cds2773;Parent=gene2829;Dbxref=Genbank:WP_001299507.1;Name=WP_001299507.1;gbkey=CDS;product=inosine-5-monophosphate dehydrogenase;protein_id=WP_001299507.1;transl_table=11 NC_008258.1 RefSeq gene 2619427 2620797 . + . ID=gene2830;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=SFV_RS14235;old_locus_tag=SFV_2556 NC_008258.1 Protein Homology CDS 2619427 2620797 . + 0 ID=cds2774;Parent=gene2830;Dbxref=Genbank:WP_000937942.1;Name=WP_000937942.1;Note=bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides;gbkey=CDS;gene=xseA;product=exodeoxyribonuclease 7 large subunit;protein_id=WP_000937942.1;transl_table=11 NC_008258.1 RefSeq gene 2620794 2621009 . - . ID=gene2831;Name=SFV_RS14240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14240;old_locus_tag=SFV_2557 NC_008258.1 Protein Homology CDS 2620794 2621009 . - 0 ID=cds2775;Parent=gene2831;Dbxref=Genbank:WP_005047279.1;Name=WP_005047279.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005047279.1;transl_table=11 NC_008258.1 RefSeq gene 2621079 2622551 . - . ID=gene2832;Name=SFV_RS14245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14245;old_locus_tag=SFV_2558 NC_008258.1 Protein Homology CDS 2621079 2622551 . - 0 ID=cds2776;Parent=gene2832;Dbxref=Genbank:WP_005047281.1;Name=WP_005047281.1;gbkey=CDS;product=GTPase Der;protein_id=WP_005047281.1;transl_table=11 NC_008258.1 RefSeq gene 2622669 2623847 . - . ID=gene2833;Name=SFV_RS14250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14250;old_locus_tag=SFV_2559 NC_008258.1 Protein Homology CDS 2622669 2623847 . - 0 ID=cds2777;Parent=gene2833;Dbxref=Genbank:WP_001177056.1;Name=WP_001177056.1;gbkey=CDS;product=outer membrane biogenesis protein BamB;protein_id=WP_001177056.1;transl_table=11 NC_008258.1 RefSeq gene 2623858 2624478 . - . ID=gene2834;Name=SFV_RS14255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14255;old_locus_tag=SFV_2560 NC_008258.1 Protein Homology CDS 2623858 2624478 . - 0 ID=cds2778;Parent=gene2834;Dbxref=Genbank:WP_000409197.1;Name=WP_000409197.1;gbkey=CDS;product=membrane protein;protein_id=WP_000409197.1;transl_table=11 NC_008258.1 RefSeq gene 2624496 2625770 . - . ID=gene2835;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=SFV_RS14260;old_locus_tag=SFV_2561 NC_008258.1 Protein Homology CDS 2624496 2625770 . - 0 ID=cds2779;Parent=gene2835;Dbxref=Genbank:WP_001107134.1;Name=WP_001107134.1;Note=catalyzes a two-step reaction%2C first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B class II aminoacyl-tRNA synthetase%3B forms homodimers%3B some organisms have a paralogous gene%2C hisZ%2C that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG;gbkey=CDS;gene=hisS;product=histidyl-tRNA synthetase;protein_id=WP_001107134.1;transl_table=11 NC_008258.1 RefSeq gene 2625873 2627000 . - . ID=gene2836;Name=SFV_RS14265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14265;old_locus_tag=SFV_2562 NC_008258.1 Protein Homology CDS 2625873 2627000 . - 0 ID=cds2780;Parent=gene2836;Dbxref=Genbank:WP_000551819.1;Name=WP_000551819.1;gbkey=CDS;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin);protein_id=WP_000551819.1;transl_table=11 NC_008258.1 RefSeq gene 2627027 2628040 . - . ID=gene2837;Name=SFV_RS14270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14270;old_locus_tag=SFV_2563 NC_008258.1 Protein Homology CDS 2627027 2628040 . - 0 ID=cds2781;Parent=gene2837;Dbxref=Genbank:WP_001090857.1;Name=WP_001090857.1;gbkey=CDS;product=cytoskeleton protein RodZ;protein_id=WP_001090857.1;transl_table=11 NC_008258.1 RefSeq gene 2628325 2629479 . - . ID=gene2838;Name=SFV_RS14275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14275;old_locus_tag=SFV_2564 NC_008258.1 Protein Homology CDS 2628325 2629479 . - 0 ID=cds2782;Parent=gene2838;Dbxref=Genbank:WP_000003328.1;Name=WP_000003328.1;Note=23S rRNA m2A2503 methyltransferase%3B methylates the C2 position of the A2530 nucleotide in 23S rRNA%3B may be involved in antibiotic resistance;gbkey=CDS;product=23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN;protein_id=WP_000003328.1;transl_table=11 NC_008258.1 RefSeq gene 2629629 2630060 . - . ID=gene2839;Name=SFV_RS14280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14280;old_locus_tag=SFV_2565 NC_008258.1 Protein Homology CDS 2629629 2630060 . - 0 ID=cds2783;Parent=gene2839;Dbxref=Genbank:WP_000963837.1;Name=WP_000963837.1;Note=catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate;gbkey=CDS;product=nucleoside diphosphate kinase;protein_id=WP_000963837.1;transl_table=11 NC_008258.1 RefSeq gene 2630210 2632258 . - . ID=gene2840;Name=SFV_RS14285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14285;old_locus_tag=SFV_2566 NC_008258.1 Protein Homology CDS 2630210 2632258 . - 0 ID=cds2784;Parent=gene2840;Dbxref=Genbank:WP_000886538.1;Name=WP_000886538.1;Note=penicillin-insensitive transglycosylase/transpeptidase;gbkey=CDS;product=penicillin-binding protein 1C;protein_id=WP_000886538.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2632227 2633688 . + . ID=id439;gbkey=repeat_region NC_008258.1 RefSeq region 2632234 2633603 . + . ID=id440;gbkey=mobile_element NC_008258.1 RefSeq gene 2632260 2633457 . - . ID=gene2841;Name=SFV_RS14290;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14290;pseudo=true NC_008258.1 Protein Homology CDS 2632260 2633457 . - 0 ID=cds2785;Parent=gene2841;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2633687 2634169 . + . ID=gene2842;Name=sseA;gbkey=Gene;gene=sseA;gene_biotype=pseudogene;locus_tag=SFV_RS14295;partial=true;pseudo=true;start_range=.,2633687 NC_008258.1 Protein Homology CDS 2633687 2634169 . + 0 ID=cds2786;Parent=gene2842;Note=catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds;exception=unextendable partial coding region;gbkey=CDS;gene=sseA;partial=true;product=3-mercaptopyruvate sulfurtransferase;pseudo=true;start_range=.,2633687;transl_table=11 NC_008258.1 RefSeq gene 2634988 2635764 . - . ID=gene2843;Name=SFV_RS14300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14300;old_locus_tag=SFV_2570 NC_008258.1 Protein Homology CDS 2634988 2635764 . - 0 ID=cds2787;Parent=gene2843;Dbxref=Genbank:WP_001295479.1;Name=WP_001295479.1;Note=enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I;gbkey=CDS;product=protein SseB;protein_id=WP_001295479.1;transl_table=11 NC_008258.1 RefSeq gene 2635906 2637189 . - . ID=gene2844;Name=SFV_RS14305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14305;old_locus_tag=SFV_2571 NC_008258.1 Protein Homology CDS 2635906 2637189 . - 0 ID=cds2788;Parent=gene2844;Dbxref=Genbank:WP_000133600.1;Name=WP_000133600.1;Note=catalyzes the removal of an N-terminal amino acid from a peptide or arylamide;gbkey=CDS;product=peptidase B;protein_id=WP_000133600.1;transl_table=11 NC_008258.1 RefSeq gene 2637248 2637448 . - . ID=gene2845;Name=SFV_RS14310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14310;old_locus_tag=SFV_2572 NC_008258.1 Protein Homology CDS 2637248 2637448 . - 0 ID=cds2789;Parent=gene2845;Dbxref=Genbank:WP_000523616.1;Name=WP_000523616.1;gbkey=CDS;product=protein IscX;protein_id=WP_000523616.1;transl_table=11 NC_008258.1 RefSeq gene 2637460 2637795 . - . ID=gene2846;Name=SFV_RS14315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14315;old_locus_tag=SFV_2573 NC_008258.1 Protein Homology CDS 2637460 2637795 . - 0 ID=cds2790;Parent=gene2846;Dbxref=Genbank:WP_001124469.1;Name=WP_001124469.1;gbkey=CDS;product=(2Fe-2S) ferredoxin;protein_id=WP_001124469.1;transl_table=11 NC_008258.1 RefSeq gene 2637797 2639647 . - . ID=gene2847;Name=hscA;gbkey=Gene;gene=hscA;gene_biotype=protein_coding;locus_tag=SFV_RS14320;old_locus_tag=SFV_2574 NC_008258.1 Protein Homology CDS 2637797 2639647 . - 0 ID=cds2791;Parent=gene2847;Dbxref=Genbank:WP_001196601.1;Name=WP_001196601.1;Note=involved in the maturation of iron-sulfur cluster-containing proteins;gbkey=CDS;gene=hscA;product=Chaperone protein HscA homolog;protein_id=WP_001196601.1;transl_table=11 NC_008258.1 RefSeq gene 2639664 2640179 . - . ID=gene2848;Name=hscB;gbkey=Gene;gene=hscB;gene_biotype=protein_coding;locus_tag=SFV_RS14325;old_locus_tag=SFV_2575 NC_008258.1 Protein Homology CDS 2639664 2640179 . - 0 ID=cds2792;Parent=gene2848;Dbxref=Genbank:WP_000384405.1;Name=WP_000384405.1;Note=J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone%3B may function in biogenesis of iron-sulfur proteins;gbkey=CDS;gene=hscB;product=co-chaperone protein HscB;protein_id=WP_000384405.1;transl_table=11 NC_008258.1 RefSeq gene 2640275 2640598 . - . ID=gene2849;Name=iscA;gbkey=Gene;gene=iscA;gene_biotype=protein_coding;locus_tag=SFV_RS14330;old_locus_tag=SFV_2576 NC_008258.1 Protein Homology CDS 2640275 2640598 . - 0 ID=cds2793;Parent=gene2849;Dbxref=Genbank:WP_000028953.1;Name=WP_000028953.1;Note=forms iron-sulfur clusters of ferredoxin [2FE-2S]%3B binds iron in the presence of the thioredoxin reductase system%3B forms homodimers and tetramers%3B similar to SufA protein;gbkey=CDS;gene=iscA;product=iron-binding protein;protein_id=WP_000028953.1;transl_table=11 NC_008258.1 RefSeq gene 2640615 2641001 . - . ID=gene2850;Name=SFV_RS14335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14335;old_locus_tag=SFV_2577 NC_008258.1 Protein Homology CDS 2640615 2641001 . - 0 ID=cds2794;Parent=gene2850;Dbxref=Genbank:WP_000331707.1;Name=WP_000331707.1;gbkey=CDS;product=Fe-S cluster assembly scaffold IscU;protein_id=WP_000331707.1;transl_table=11 NC_008258.1 RefSeq gene 2641029 2642243 . - . ID=gene2851;Name=SFV_RS14340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14340;old_locus_tag=SFV_2578 NC_008258.1 Protein Homology CDS 2641029 2642243 . - 0 ID=cds2795;Parent=gene2851;Dbxref=Genbank:WP_001295373.1;Name=WP_001295373.1;Note=catalyzes the removal of elemental sulfur from cysteine to produce alanine%3B involved in NAD biosynthesis;gbkey=CDS;product=cysteine desulfurase IscS;protein_id=WP_001295373.1;transl_table=11 NC_008258.1 RefSeq gene 2642355 2642843 . - . ID=gene2852;Name=SFV_RS14345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14345;old_locus_tag=SFV_2579 NC_008258.1 Protein Homology CDS 2642355 2642843 . - 0 ID=cds2796;Parent=gene2852;Dbxref=Genbank:WP_001241357.1;Name=WP_001241357.1;Note=regulates the expression of the iscRSUA operon;gbkey=CDS;product=Fe-S cluster assembly transcriptional regulator IscR;protein_id=WP_001241357.1;transl_table=11 NC_008258.1 RefSeq gene 2643113 2643853 . - . ID=gene2853;Name=SFV_RS14350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14350;old_locus_tag=SFV_2580 NC_008258.1 Protein Homology CDS 2643113 2643853 . - 0 ID=cds2797;Parent=gene2853;Dbxref=Genbank:WP_000940019.1;Name=WP_000940019.1;Note=catalyzes the fromation of 2'O-methylated cytidine or 2'O-methylated uridine at position 32 in tRNA;gbkey=CDS;product=tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ;protein_id=WP_000940019.1;transl_table=11 NC_008258.1 RefSeq gene 2643972 2644775 . + . ID=gene2854;Name=SFV_RS14355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14355;old_locus_tag=SFV_2581 NC_008258.1 Protein Homology CDS 2643972 2644775 . + 0 ID=cds2798;Parent=gene2854;Dbxref=Genbank:WP_000553449.1;Name=WP_000553449.1;gbkey=CDS;product=inositol monophosphatase;protein_id=WP_000553449.1;transl_table=11 NC_008258.1 RefSeq gene 2644920 2645774 . + . ID=gene2855;Name=SFV_RS14360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14360;old_locus_tag=SFV_2582 NC_008258.1 Protein Homology CDS 2644920 2645774 . + 0 ID=cds2799;Parent=gene2855;Dbxref=Genbank:WP_005047302.1;Name=WP_005047302.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005047302.1;transl_table=11 NC_008258.1 RefSeq gene 2645965 2647245 . + . ID=gene2856;Name=SFV_RS14365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14365;old_locus_tag=SFV_2583 NC_008258.1 Protein Homology CDS 2645965 2647245 . + 0 ID=cds2800;Parent=gene2856;Dbxref=Genbank:WP_000982984.1;Name=WP_000982984.1;gbkey=CDS;product=stationary phase inducible protein CsiE;protein_id=WP_000982984.1;transl_table=11 NC_008258.1 RefSeq gene 2647237 2648376 . - . ID=gene2857;Name=SFV_RS14370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14370;old_locus_tag=SFV_2584 NC_008258.1 Protein Homology CDS 2647237 2648376 . - 0 ID=cds2801;Parent=gene2857;Dbxref=Genbank:WP_000244177.1;Name=WP_000244177.1;Note=transporter of 3-phenylpropionate across the inner membrane%3B member of the major facilitator superfamily of transporters;gbkey=CDS;product=3-phenylpropionic acid transporter;protein_id=WP_000244177.1;transl_table=11 NC_008258.1 RefSeq gene 2648536 2649426 . - . ID=gene2858;Name=SFV_RS14375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14375;old_locus_tag=SFV_2585 NC_008258.1 Protein Homology CDS 2648536 2649426 . - 0 ID=cds2802;Parent=gene2858;Dbxref=Genbank:WP_000423255.1;Name=WP_000423255.1;Note=activator of 3-phenylpropionic acid catabolism;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000423255.1;transl_table=11 NC_008258.1 RefSeq gene 2649562 2650923 . + . ID=gene2859;Name=SFV_RS14380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14380;old_locus_tag=SFV_2586 NC_008258.1 Protein Homology CDS 2649562 2650923 . + 0 ID=cds2803;Parent=gene2859;Dbxref=Genbank:WP_000211166.1;Name=WP_000211166.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase subunit alpha;protein_id=WP_000211166.1;transl_table=11 NC_008258.1 RefSeq gene 2650920 2651438 . + . ID=gene2860;Name=SFV_RS14385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14385;old_locus_tag=SFV_2587 NC_008258.1 Protein Homology CDS 2650920 2651438 . + 0 ID=cds2804;Parent=gene2860;Dbxref=Genbank:WP_001276078.1;Name=WP_001276078.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase subunit beta;protein_id=WP_001276078.1;transl_table=11 NC_008258.1 RefSeq gene 2651438 2651758 . + . ID=gene2861;Name=SFV_RS14390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14390;old_locus_tag=SFV_2588 NC_008258.1 Protein Homology CDS 2651438 2651758 . + 0 ID=cds2805;Parent=gene2861;Dbxref=Genbank:WP_001080099.1;Name=WP_001080099.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit;protein_id=WP_001080099.1;transl_table=11 NC_008258.1 RefSeq gene 2651755 2652567 . + . ID=gene2862;Name=SFV_RS14395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14395;old_locus_tag=SFV_2589 NC_008258.1 Protein Homology CDS 2651755 2652567 . + 0 ID=cds2806;Parent=gene2862;Dbxref=Genbank:WP_001281382.1;Name=WP_001281382.1;Note=Converts cis-3-(3-carboxyethyl)-3%2C5-cyclohexadiene-1%2C2-diol (PP-dihydrodiol) into 3-(2%2C3-dihydroxylphenyl)propionate;gbkey=CDS;product=3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase;protein_id=WP_001281382.1;transl_table=11 NC_008258.1 RefSeq gene 2652577 2653809 . + . ID=gene2863;Name=SFV_RS14400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14400;old_locus_tag=SFV_2590 NC_008258.1 Protein Homology CDS 2652577 2653809 . + 0 ID=cds2807;Parent=gene2863;Dbxref=Genbank:WP_000660784.1;Name=WP_000660784.1;gbkey=CDS;product=3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD+ reductase component;protein_id=WP_000660784.1;transl_table=11 NC_008258.1 RefSeq gene 2653906 2654327 . + . ID=gene2864;Name=SFV_RS14405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14405;pseudo=true NC_008258.1 Protein Homology CDS 2653906 2654327 . + 0 ID=cds2808;Parent=gene2864;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2654375 2655247 . - . ID=gene2865;Name=SFV_RS14410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14410;old_locus_tag=SFV_2592 NC_008258.1 Protein Homology CDS 2654375 2655247 . - 0 ID=cds2809;Parent=gene2865;Dbxref=Genbank:WP_000158541.1;Name=WP_000158541.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000158541.1;transl_table=11 NC_008258.1 RefSeq gene 2655259 2656320 . - . ID=gene2866;Name=SFV_RS14415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14415;old_locus_tag=SFV_2593 NC_008258.1 Protein Homology CDS 2655259 2656320 . - 0 ID=cds2810;Parent=gene2866;Dbxref=Genbank:WP_005105695.1;Name=WP_005105695.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_005105695.1;transl_table=11 NC_008258.1 RefSeq gene 2656386 2657384 . - . ID=gene2867;Name=SFV_RS14420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14420;old_locus_tag=SFV_2594 NC_008258.1 Protein Homology CDS 2656386 2657384 . - 0 ID=cds2811;Parent=gene2867;Dbxref=Genbank:WP_000271335.1;Name=WP_000271335.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_000271335.1;transl_table=11 NC_008258.1 RefSeq gene 2657409 2658920 . - . ID=gene2868;Name=SFV_RS14425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14425;old_locus_tag=SFV_2595 NC_008258.1 Protein Homology CDS 2657409 2658920 . - 0 ID=cds2812;Parent=gene2868;Dbxref=Genbank:WP_000493489.1;Name=WP_000493489.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000493489.1;transl_table=11 NC_008258.1 RefSeq gene 2658943 2659926 . - . ID=gene2869;Name=SFV_RS14430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14430;old_locus_tag=SFV_2596 NC_008258.1 Protein Homology CDS 2658943 2659926 . - 0 ID=cds2813;Parent=gene2869;Dbxref=Genbank:WP_001124894.1;Name=WP_001124894.1;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;protein_id=WP_001124894.1;transl_table=11 NC_008258.1 RefSeq gene 2660023 2663124 . - . ID=gene2870;Name=SFV_RS14435;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14435;pseudo=true NC_008258.1 Protein Homology CDS 2660023 2663124 . - 0 ID=cds2814;Parent=gene2870;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2661913..2661915)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2663422 2664615 . + . ID=gene2871;Name=SFV_RS14440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14440;old_locus_tag=SFV_2598 NC_008258.1 Protein Homology CDS 2663422 2664615 . + 0 ID=cds2815;Parent=gene2871;Dbxref=Genbank:WP_024260295.1;Name=WP_024260295.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260295.1;transl_table=11 NC_008258.1 RefSeq gene 2664813 2666066 . - . ID=gene2872;Name=SFV_RS14445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14445;old_locus_tag=SFV_2599 NC_008258.1 Protein Homology CDS 2664813 2666066 . - 0 ID=cds2816;Parent=gene2872;Dbxref=Genbank:WP_000919159.1;Name=WP_000919159.1;gbkey=CDS;product=serine hydroxymethyltransferase;protein_id=WP_000919159.1;transl_table=11 NC_008258.1 RefSeq gene 2666393 2667583 . + . ID=gene2873;Name=SFV_RS14450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14450;old_locus_tag=SFV_2600 NC_008258.1 Protein Homology CDS 2666393 2667583 . + 0 ID=cds2817;Parent=gene2873;Dbxref=Genbank:WP_000883129.1;Name=WP_000883129.1;Note=flavohemoprotein%3B catalyzes the formation of nitrate from nitric oxide%3B can also catalyze the reduction of dihydropteridine;gbkey=CDS;product=flavohemoprotein;protein_id=WP_000883129.1;transl_table=11 NC_008258.1 RefSeq gene 2667628 2667966 . - . ID=gene2874;Name=SFV_RS14455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14455;old_locus_tag=SFV_2601 NC_008258.1 Protein Homology CDS 2667628 2667966 . - 0 ID=cds2818;Parent=gene2874;Dbxref=Genbank:WP_000717694.1;Name=WP_000717694.1;Note=indirectly regulates nitrogen metabolism%3B at high nitrogen levels P-II prevents the phosphorylation of NR-I%2C the transcriptional activator of the glutamine synthetase gene (glnA)%3B at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA;gbkey=CDS;product=nitrogen regulatory protein P-II 1;protein_id=WP_000717694.1;transl_table=11 NC_008258.1 RefSeq gene 2668027 2669361 . - . ID=gene2875;Name=SFV_RS14460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14460;old_locus_tag=SFV_2602 NC_008258.1 Protein Homology CDS 2668027 2669361 . - 0 ID=cds2819;Parent=gene2875;Dbxref=Genbank:WP_005047323.1;Name=WP_005047323.1;Note=with GlrK is part of a two-component signal transduction system regulating glmY;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005047323.1;transl_table=11 NC_008258.1 RefSeq gene 2669351 2670064 . - . ID=gene2876;Name=SFV_RS14465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14465;old_locus_tag=SFV_2603 NC_008258.1 Protein Homology CDS 2669351 2670064 . - 0 ID=cds2820;Parent=gene2876;Dbxref=Genbank:WP_001215861.1;Name=WP_001215861.1;gbkey=CDS;product=quorum-sensing regulator protein G;protein_id=WP_001215861.1;transl_table=11 NC_008258.1 RefSeq gene 2670229 2671656 . - . ID=gene2877;Name=SFV_RS14470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14470;old_locus_tag=SFV_2604 NC_008258.1 Protein Homology CDS 2670229 2671656 . - 0 ID=cds2821;Parent=gene2877;Dbxref=Genbank:WP_005047325.1;Name=WP_005047325.1;Note=part of the GlrKR two-component signal transduction system involved in the regulation of glmY;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_005047325.1;transl_table=11 NC_008258.1 RefSeq gene 2672232 2676119 . - . ID=gene2878;Name=SFV_RS14475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14475;old_locus_tag=SFV_2605 NC_008258.1 Protein Homology CDS 2672232 2676119 . - 0 ID=cds2822;Parent=gene2878;Dbxref=Genbank:WP_000970142.1;Name=WP_000970142.1;Note=catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis;gbkey=CDS;product=phosphoribosylformylglycinamidine synthase;protein_id=WP_000970142.1;transl_table=11 NC_008258.1 RefSeq gene 2676378 2677934 . + . ID=gene2879;Name=SFV_RS14480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14480;old_locus_tag=SFV_2606 NC_008258.1 Protein Homology CDS 2676378 2677934 . + 0 ID=cds2823;Parent=gene2879;Dbxref=Genbank:WP_000734232.1;Name=WP_000734232.1;gbkey=CDS;product=murein transglycosylase;protein_id=WP_000734232.1;transl_table=11 NC_008258.1 RefSeq gene 2677931 2678434 . - . ID=gene2880;Name=SFV_RS14485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14485;old_locus_tag=SFV_2607 NC_008258.1 Protein Homology CDS 2677931 2678434 . - 0 ID=cds2824;Parent=gene2880;Dbxref=Genbank:WP_005105697.1;Name=WP_005105697.1;gbkey=CDS;product=tRNA-specific adenosine deaminase;protein_id=WP_005105697.1;transl_table=11 NC_008258.1 RefSeq gene 2678492 2679127 . - . ID=gene2881;Name=SFV_RS14490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14490;old_locus_tag=SFV_2608 NC_008258.1 Protein Homology CDS 2678492 2679127 . - 0 ID=cds2825;Parent=gene2881;Dbxref=Genbank:WP_000190655.1;Name=WP_000190655.1;gbkey=CDS;product=phosphatidylglycerophosphatase C;protein_id=WP_000190655.1;transl_table=11 NC_008258.1 RefSeq gene 2679336 2680184 . + . ID=gene2882;Name=SFV_RS14495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14495;old_locus_tag=SFV_2609 NC_008258.1 Protein Homology CDS 2679336 2680184 . + 0 ID=cds2826;Parent=gene2882;Dbxref=Genbank:WP_001013778.1;Name=WP_001013778.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001013778.1;transl_table=11 NC_008258.1 RefSeq gene 2680523 2681077 . - . ID=gene2883;Name=SFV_RS14500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14500;old_locus_tag=SFV_2610;pseudo=true NC_008258.1 Protein Homology CDS 2680523 2681077 . - 0 ID=cds2827;Parent=gene2883;gbkey=CDS;product=DNA-invertase;pseudo=true;transl_except=(pos:complement(2680637..2680639)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 2681013 2686389 . + . ID=id441;gbkey=repeat_region NC_008258.1 RefSeq gene 2681569 2683395 . + . ID=gene2884;Name=SFV_RS14505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14505;old_locus_tag=SFV_2611 NC_008258.1 Protein Homology CDS 2681569 2683395 . + 0 ID=cds2828;Parent=gene2884;Dbxref=Genbank:WP_011110613.1;Name=WP_011110613.1;gbkey=CDS;product=invasion protein;protein_id=WP_011110613.1;transl_table=11 NC_008258.1 RefSeq gene 2683396 2683575 . - . ID=gene2885;Name=SFV_RS14510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14510 NC_008258.1 Protein Homology CDS 2683396 2683575 . - 0 ID=cds2829;Parent=gene2885;Dbxref=Genbank:WP_001039885.1;Name=WP_001039885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039885.1;transl_table=11 NC_008258.1 RefSeq gene 2683575 2684198 . - . ID=gene2886;Name=SFV_RS14515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14515;old_locus_tag=SFV_2612 NC_008258.1 Protein Homology CDS 2683575 2684198 . - 0 ID=cds2830;Parent=gene2886;Dbxref=Genbank:WP_000930151.1;Name=WP_000930151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000930151.1;transl_table=11 NC_008258.1 RefSeq gene 2684149 2685417 . - . ID=gene2887;Name=SFV_RS14520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14520;old_locus_tag=SFV_2613 NC_008258.1 Protein Homology CDS 2684149 2685417 . - 0 ID=cds2831;Parent=gene2887;Dbxref=Genbank:WP_005105699.1;Name=WP_005105699.1;gbkey=CDS;product=tail protein;protein_id=WP_005105699.1;transl_table=11 NC_008258.1 RefSeq gene 2685441 2685986 . - . ID=gene2888;Name=SFV_RS14525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14525;old_locus_tag=SFV_2614 NC_008258.1 Protein Homology CDS 2685441 2685986 . - 0 ID=cds2832;Parent=gene2888;Dbxref=Genbank:WP_000902894.1;Name=WP_000902894.1;gbkey=CDS;product=tail assembly protein;protein_id=WP_000902894.1;transl_table=11 NC_008258.1 RefSeq gene 2686010 2686462 . - . ID=gene2889;Name=SFV_RS14530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14530;old_locus_tag=SFV_2615 NC_008258.1 Protein Homology CDS 2686010 2686462 . - 0 ID=cds2833;Parent=gene2889;Dbxref=Genbank:WP_000951753.1;Name=WP_000951753.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000951753.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2686476 2687813 . + . ID=id442;gbkey=repeat_region NC_008258.1 RefSeq region 2686480 2687810 . + . ID=id443;gbkey=mobile_element NC_008258.1 RefSeq gene 2686571 2686936 . + . ID=gene2890;Name=SFV_RS14535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14535;old_locus_tag=SFV_2616 NC_008258.1 Protein Homology CDS 2686571 2686936 . + 0 ID=cds2834;Parent=gene2890;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 2686939 2687241 . - . ID=gene2891;Name=SFV_RS14540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14540 NC_008258.1 Protein Homology CDS 2686939 2687241 . - 0 ID=cds2835;Parent=gene2891;Dbxref=Genbank:WP_000336276.1;Name=WP_000336276.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000336276.1;transl_table=11 NC_008258.1 RefSeq gene 2687724 2688710 . - . ID=gene2892;Name=SFV_RS14545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14545;old_locus_tag=SFV_2618 NC_008258.1 Protein Homology CDS 2687724 2688710 . - 0 ID=cds2836;Parent=gene2892;Dbxref=Genbank:WP_000647601.1;Name=WP_000647601.1;gbkey=CDS;product=tail protein;protein_id=WP_000647601.1;transl_table=11 NC_008258.1 RefSeq gene 2688697 2689302 . - . ID=gene2893;Name=SFV_RS14550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14550;old_locus_tag=SFV_2619 NC_008258.1 Protein Homology CDS 2688697 2689302 . - 0 ID=cds2837;Parent=gene2893;Dbxref=Genbank:WP_001181756.1;Name=WP_001181756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001181756.1;transl_table=11 NC_008258.1 RefSeq gene 2689313 2690008 . - . ID=gene2894;Name=SFV_RS14555;end_range=2690008,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14555;old_locus_tag=SFV_2620;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2689313 2690008 . - 0 ID=cds2838;Parent=gene2894;end_range=2690008,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2690003 2691271 . + . ID=id444;gbkey=repeat_region NC_008258.1 RefSeq region 2690006 2691269 . + . ID=id445;gbkey=mobile_element NC_008258.1 RefSeq gene 2690070 2690372 . + . ID=gene2895;Name=SFV_RS14560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14560;old_locus_tag=SFV_2621 NC_008258.1 Protein Homology CDS 2690070 2690372 . + 0 ID=cds2839;Parent=gene2895;Dbxref=Genbank:WP_000088261.1;Name=WP_000088261.1;gbkey=CDS;product=transposase;protein_id=WP_000088261.1;transl_table=11 NC_008258.1 RefSeq gene 2690513 2691226 . + . ID=gene2896;Name=SFV_RS14565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14565;old_locus_tag=SFV_2622 NC_008258.1 Protein Homology CDS 2690513 2691226 . + 0 ID=cds2840;Parent=gene2896;Dbxref=Genbank:WP_011587260.1;Name=WP_011587260.1;gbkey=CDS;product=transposase;protein_id=WP_011587260.1;transl_table=11 NC_008258.1 RefSeq gene 2691270 2692367 . - . ID=gene2897;Name=SFV_RS14570;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14570;old_locus_tag=SFV_2623;partial=true;pseudo=true;start_range=.,2691270 NC_008258.1 Protein Homology CDS 2691270 2692367 . - 0 ID=cds2841;Parent=gene2897;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=recombinase;pseudo=true;start_range=.,2691270;transl_table=11 NC_008258.1 RefSeq gene 2692582 2692842 . + . ID=gene2898;Name=SFV_RS14575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14575 NC_008258.1 Protein Homology CDS 2692582 2692842 . + 0 ID=cds2842;Parent=gene2898;Dbxref=Genbank:WP_000054752.1;Name=WP_000054752.1;gbkey=CDS;product=ferredoxin;protein_id=WP_000054752.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2692888 2693661 . + . ID=id446;gbkey=repeat_region NC_008258.1 RefSeq region 2692890 2693657 . - . ID=id447;gbkey=mobile_element NC_008258.1 RefSeq gene 2692905 2693300 . - . ID=gene2899;Name=SFV_RS14580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14580 NC_008258.1 Protein Homology CDS 2692905 2693300 . - 0 ID=cds2843;Parent=gene2899;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 2693327 2693551 . - . ID=gene2900;Name=SFV_RS14585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14585 NC_008258.1 Protein Homology CDS 2693327 2693551 . - 0 ID=cds2844;Parent=gene2900;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2693813 2693893 . - . ID=gene2901;Name=SFV_RS14590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14590 NC_008258.1 Protein Homology CDS 2693813 2693893 . - 0 ID=cds2845;Parent=gene2901;Dbxref=Genbank:WP_000128776.1;Name=WP_000128776.1;gbkey=CDS;product=small toxic protein ShoB;protein_id=WP_000128776.1;transl_table=11 NC_008258.1 RefSeq gene 2693890 2694042 . - . ID=gene2902;Name=SFV_RS14595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14595 NC_008258.1 Protein Homology CDS 2693890 2694042 . - 0 ID=cds2846;Parent=gene2902;Dbxref=Genbank:WP_012135949.1;Name=WP_012135949.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_012135949.1;transl_table=11 NC_008258.1 RefSeq gene 2694079 2694207 . + . ID=gene2903;Name=SFV_RS14600;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14600;partial=true;pseudo=true;start_range=.,2694079 NC_008258.1 Protein Homology CDS 2694079 2694207 . + 0 ID=cds2847;Parent=gene2903;gbkey=CDS;partial=true;product=glutamate decarboxylase;pseudo=true;start_range=.,2694079;transl_except=(pos:2694112..2694114%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2694313 2694693 . - . ID=gene2904;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=SFV_RS14605;old_locus_tag=SFV_2626 NC_008258.1 Protein Homology CDS 2694313 2694693 . - 0 ID=cds2848;Parent=gene2904;Dbxref=Genbank:WP_000986029.1;Name=WP_000986029.1;Note=Catalyzes the formation of holo-ACP%2C which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids;gbkey=CDS;gene=acpS;product=holo-ACP synthase;protein_id=WP_000986029.1;transl_table=11 NC_008258.1 RefSeq gene 2694693 2695424 . - . ID=gene2905;Name=SFV_RS14610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14610;old_locus_tag=SFV_2627 NC_008258.1 Protein Homology CDS 2694693 2695424 . - 0 ID=cds2849;Parent=gene2905;Dbxref=Genbank:WP_004969731.1;Name=WP_004969731.1;Note=involved in the de novo synthesis of pyridoxine (Vitamin B6);gbkey=CDS;product=pyridoxine 5'-phosphate synthase;protein_id=WP_004969731.1;transl_table=11 NC_008258.1 RefSeq gene 2695436 2696164 . - . ID=gene2906;Name=recO;gbkey=Gene;gene=recO;gene_biotype=protein_coding;locus_tag=SFV_RS14615;old_locus_tag=SFV_2628 NC_008258.1 Protein Homology CDS 2695436 2696164 . - 0 ID=cds2850;Parent=gene2906;Dbxref=Genbank:WP_000399397.1;Name=WP_000399397.1;Note=involved in DNA repair and RecFOR pathway recombination%3B RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA;gbkey=CDS;gene=recO;product=DNA repair protein RecO;protein_id=WP_000399397.1;transl_table=11 NC_008258.1 RefSeq gene 2696176 2697081 . - . ID=gene2907;Name=SFV_RS14620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14620;old_locus_tag=SFV_2629 NC_008258.1 Protein Homology CDS 2696176 2697081 . - 0 ID=cds2851;Parent=gene2907;Dbxref=Genbank:WP_000020745.1;Name=WP_000020745.1;gbkey=CDS;product=GTPase Era;protein_id=WP_000020745.1;transl_table=11 NC_008258.1 RefSeq gene 2697078 2697758 . - . ID=gene2908;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=SFV_RS14625;old_locus_tag=SFV_2630 NC_008258.1 Protein Homology CDS 2697078 2697758 . - 0 ID=cds2852;Parent=gene2908;Dbxref=Genbank:WP_001068343.1;Name=WP_001068343.1;Note=cytoplasmic enzyme involved in processing rRNA and some mRNAs%3B substrates typically have dsRNA regions%3B forms a homodimer%3B have N-terminal nuclease and C-terminal RNA-binding domains%3B requires magnesium as preferred ion for activity;gbkey=CDS;gene=rnc;product=ribonuclease 3;protein_id=WP_001068343.1;transl_table=11 NC_008258.1 RefSeq gene 2698030 2699004 . - . ID=gene2909;Name=SFV_RS14630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14630;old_locus_tag=SFV_2631 NC_008258.1 Protein Homology CDS 2698030 2699004 . - 0 ID=cds2853;Parent=gene2909;Dbxref=Genbank:WP_000002542.1;Name=WP_000002542.1;Note=catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins;gbkey=CDS;product=signal peptidase I;protein_id=WP_000002542.1;transl_table=11 NC_008258.1 RefSeq gene 2699020 2700819 . - . ID=gene2910;Name=SFV_RS14635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14635;old_locus_tag=SFV_2632 NC_008258.1 Protein Homology CDS 2699020 2700819 . - 0 ID=cds2854;Parent=gene2910;Dbxref=Genbank:WP_000790168.1;Name=WP_000790168.1;gbkey=CDS;product=elongation factor 4;protein_id=WP_000790168.1;transl_table=11 NC_008258.1 RefSeq gene 2701017 2701496 . - . ID=gene2911;Name=SFV_RS14640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14640;old_locus_tag=SFV_2633 NC_008258.1 Protein Homology CDS 2701017 2701496 . - 0 ID=cds2855;Parent=gene2911;Dbxref=Genbank:WP_000589070.1;Name=WP_000589070.1;Note=involved in the reduction of the SoxR iron-sulfur cluster;gbkey=CDS;product=SoxR reducing system protein RseC;protein_id=WP_000589070.1;transl_table=11 NC_008258.1 RefSeq gene 2701493 2702449 . - . ID=gene2912;Name=rseB;gbkey=Gene;gene=rseB;gene_biotype=protein_coding;locus_tag=SFV_RS14645;old_locus_tag=SFV_2634 NC_008258.1 Protein Homology CDS 2701493 2702449 . - 0 ID=cds2856;Parent=gene2912;Dbxref=Genbank:WP_000812059.1;Name=WP_000812059.1;Note=periplasmic protein%3B interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP;gbkey=CDS;gene=rseB;product=anti-sigma E factor;protein_id=WP_000812059.1;transl_table=11 NC_008258.1 RefSeq gene 2702449 2703099 . - . ID=gene2913;Name=SFV_RS14650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14650;old_locus_tag=SFV_2635 NC_008258.1 Protein Homology CDS 2702449 2703099 . - 0 ID=cds2857;Parent=gene2913;Dbxref=Genbank:WP_001168466.1;Name=WP_001168466.1;gbkey=CDS;product=anti-RNA polymerase sigma factor SigE;protein_id=WP_001168466.1;transl_table=11 NC_008258.1 RefSeq gene 2703132 2703707 . - . ID=gene2914;Name=SFV_RS14655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14655;old_locus_tag=SFV_2636 NC_008258.1 Protein Homology CDS 2703132 2703707 . - 0 ID=cds2858;Parent=gene2914;Dbxref=Genbank:WP_001295364.1;Name=WP_001295364.1;Note=Member of the extracytoplasmic function sigma factors which are active under specific conditions%3B binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription%3B this sigma factor is involved in heat shock and oxidative stress response;gbkey=CDS;product=ECF RNA polymerase sigma-E factor;protein_id=WP_001295364.1;transl_table=11 NC_008258.1 RefSeq gene 2703704 2703859 . - . ID=gene2915;Name=SFV_RS14660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14660 NC_008258.1 Protein Homology CDS 2703704 2703859 . - 0 ID=cds2859;Parent=gene2915;Dbxref=Genbank:WP_044024067.1;Name=WP_044024067.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024067.1;transl_table=11 NC_008258.1 RefSeq gene 2704115 2705737 . + . ID=gene2916;Name=SFV_RS14665;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14665;pseudo=true NC_008258.1 Protein Homology CDS 2704115 2705737 . + 0 ID=cds2860;Parent=gene2916;Note=catalyzes the formation of oxaloacetate from L-aspartate;gbkey=CDS;product=L-aspartate oxidase;pseudo=true;transl_except=(pos:2705174..2705176%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2705722 2706459 . - . ID=gene2917;Name=SFV_RS14670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14670;old_locus_tag=SFV_2638 NC_008258.1 Protein Homology CDS 2705722 2706459 . - 0 ID=cds2861;Parent=gene2917;Dbxref=Genbank:WP_001298974.1;Name=WP_001298974.1;gbkey=CDS;product=tRNA1(Val) (adenine(37)-N6)-methyltransferase;protein_id=WP_001298974.1;transl_table=11 NC_008258.1 RefSeq gene 2706591 2707925 . + . ID=gene2918;Name=SFV_RS14675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14675;old_locus_tag=SFV_2639 NC_008258.1 Protein Homology CDS 2706591 2707925 . + 0 ID=cds2862;Parent=gene2918;Dbxref=Genbank:WP_000219193.1;Name=WP_000219193.1;Note=facilitates an early step in the assembly of the 50S subunit of the ribosome;gbkey=CDS;product=ATP-dependent RNA helicase SrmB;protein_id=WP_000219193.1;transl_table=11 NC_008258.1 RefSeq gene 2707960 2708841 . - . ID=gene2919;Name=SFV_RS14680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14680;old_locus_tag=SFV_2640 NC_008258.1 Protein Homology CDS 2707960 2708841 . - 0 ID=cds2863;Parent=gene2919;Dbxref=Genbank:WP_005051239.1;Name=WP_005051239.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_005051239.1;transl_table=11 NC_008258.1 RefSeq gene 2708944 2709531 . + . ID=gene2920;Name=SFV_RS14685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14685;old_locus_tag=SFV_2641 NC_008258.1 Protein Homology CDS 2708944 2709531 . + 0 ID=cds2864;Parent=gene2920;Dbxref=Genbank:WP_000187873.1;Name=WP_000187873.1;gbkey=CDS;product=cysteine/O-acetylserine efflux protein;protein_id=WP_000187873.1;transl_table=11 NC_008258.1 RefSeq gene 2709587 2709970 . - . ID=gene2921;Name=SFV_RS14690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14690;old_locus_tag=SFV_2642 NC_008258.1 Protein Homology CDS 2709587 2709970 . - 0 ID=cds2865;Parent=gene2921;Dbxref=Genbank:WP_000627813.1;Name=WP_000627813.1;Note=stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit;gbkey=CDS;product=autonomous glycyl radical cofactor GrcA;protein_id=WP_000627813.1;transl_table=11 NC_008258.1 RefSeq gene 2710275 2710964 . + . ID=gene2922;Name=SFV_RS14695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14695;old_locus_tag=SFV_2643 NC_008258.1 Protein Homology CDS 2710275 2710964 . + 0 ID=cds2866;Parent=gene2922;Dbxref=Genbank:WP_001262715.1;Name=WP_001262715.1;Note=Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine;gbkey=CDS;product=uracil-DNA glycosylase;protein_id=WP_001262715.1;transl_table=11 NC_008258.1 RefSeq gene 2711012 2712049 . - . ID=gene2923;Name=SFV_RS14700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14700;old_locus_tag=SFV_2644 NC_008258.1 Protein Homology CDS 2711012 2712049 . - 0 ID=cds2867;Parent=gene2923;Dbxref=Genbank:WP_000997395.1;Name=WP_000997395.1;gbkey=CDS;product=methyltransferase;protein_id=WP_000997395.1;transl_table=11 NC_008258.1 RefSeq gene 2712039 2712197 . - . ID=gene2924;Name=SFV_RS14705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14705 NC_008258.1 Protein Homology CDS 2712039 2712197 . - 0 ID=cds2868;Parent=gene2924;Dbxref=Genbank:WP_032155618.1;Name=WP_032155618.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155618.1;transl_table=11 NC_008258.1 RefSeq gene 2712256 2712675 . + . ID=gene2925;Name=SFV_RS14710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14710;old_locus_tag=SFV_2645 NC_008258.1 Protein Homology CDS 2712256 2712675 . + 0 ID=cds2869;Parent=gene2925;Dbxref=Genbank:WP_001098726.1;Name=WP_001098726.1;gbkey=CDS;product=thioredoxin;protein_id=WP_001098726.1;transl_table=11 NC_008258.1 RefSeq gene 2712744 2713442 . + . ID=gene2926;Name=SFV_RS14715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14715;old_locus_tag=SFV_2646 NC_008258.1 Protein Homology CDS 2712744 2713442 . + 0 ID=cds2870;Parent=gene2926;Dbxref=Genbank:WP_001343689.1;Name=WP_001343689.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001343689.1;transl_table=11 NC_008258.1 RefSeq gene 2713474 2716134 . + . ID=gene2927;Name=SFV_RS14720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14720;old_locus_tag=SFV_2647 NC_008258.1 Protein Homology CDS 2713474 2716134 . + 0 ID=cds2871;Parent=gene2927;Dbxref=Genbank:WP_000082967.1;Name=WP_000082967.1;Note=catalyzes the acetylation of lysine;gbkey=CDS;product=protein lysine acetyltransferase;protein_id=WP_000082967.1;transl_table=11 NC_008258.1 RefSeq gene 2716248 2717603 . + . ID=gene2928;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=SFV_RS14725;old_locus_tag=SFV_2648 NC_008258.1 Protein Homology CDS 2716248 2717603 . + 0 ID=cds2872;Parent=gene2928;Dbxref=Genbank:WP_005051257.1;Name=WP_005051257.1;Note=catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine%3B bounds to the ribosome;gbkey=CDS;gene=pssA;product=phosphatidylserine synthase;protein_id=WP_005051257.1;transl_table=11 NC_008258.1 RefSeq gene 2717700 2717972 . + . ID=gene2929;Name=SFV_RS14730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14730;old_locus_tag=SFV_2649 NC_008258.1 Protein Homology CDS 2717700 2717972 . + 0 ID=cds2873;Parent=gene2929;Dbxref=Genbank:WP_005070466.1;Name=WP_005070466.1;gbkey=CDS;product=lipoprotein;protein_id=WP_005070466.1;transl_table=11 NC_008258.1 RefSeq gene 2717969 2719267 . - . ID=gene2930;Name=SFV_RS14735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14735;old_locus_tag=SFV_2650 NC_008258.1 Protein Homology CDS 2717969 2719267 . - 0 ID=cds2874;Parent=gene2930;Dbxref=Genbank:WP_000852123.1;Name=WP_000852123.1;gbkey=CDS;product=alpha-ketoglutarate transporter;protein_id=WP_000852123.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2719550 2724932 . + . ID=id448;gbkey=repeat_region NC_008258.1 RefSeq gene 2719593 2719708 . - . ID=gene2931;Name=SFV_RS14740;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS14740;old_locus_tag=SFV_2651 NC_008258.1 cmsearch rRNA 2719593 2719708 . - . ID=rna56;Parent=gene2931;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 2719593 2719708 . - . ID=id449;Parent=rna56;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 2719792 2722716 . - . ID=gene2932;Name=SFV_RS14745;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS14745;old_locus_tag=SFV_2652 NC_008258.1 RefSeq rRNA 2719792 2722716 . - . ID=rna57;Parent=gene2932;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 2719792 2722716 . - . ID=id450;Parent=rna57;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 2722901 2722976 . - . ID=gene2933;Name=SFV_RS14750;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS14750;old_locus_tag=SFV_2653 NC_008258.1 tRNAscan-SE tRNA 2722901 2722976 . - . ID=rna58;Parent=gene2933;anticodon=(pos:complement(2722940..2722942));gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 2722901 2722976 . - . ID=id451;Parent=rna58;anticodon=(pos:complement(2722940..2722942));gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 2723050 2724605 . - . ID=gene2934;Name=SFV_RS14755;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS14755;old_locus_tag=SFV_2654 NC_008258.1 RefSeq rRNA 2723050 2724605 . - . ID=rna59;Parent=gene2934;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 2723050 2724605 . - . ID=id452;Parent=rna59;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq repeat_region 2725032 2726465 . + . ID=id453;gbkey=repeat_region NC_008258.1 RefSeq region 2725035 2726462 . + . ID=id454;gbkey=mobile_element NC_008258.1 RefSeq gene 2725101 2725841 . + . ID=gene2935;Name=SFV_RS14760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14760;old_locus_tag=SFV_2655 NC_008258.1 Protein Homology CDS 2725101 2725841 . + 0 ID=cds2875;Parent=gene2935;Dbxref=Genbank:WP_011587261.1;Name=WP_011587261.1;gbkey=CDS;product=transposase;protein_id=WP_011587261.1;transl_table=11 NC_008258.1 RefSeq gene 2725810 2726448 . + . ID=gene2936;Name=SFV_RS14765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14765;old_locus_tag=SFV_2656 NC_008258.1 Protein Homology CDS 2725810 2726448 . + 0 ID=cds2876;Parent=gene2936;Dbxref=Genbank:WP_005060741.1;Name=WP_005060741.1;gbkey=CDS;product=transposase;protein_id=WP_005060741.1;transl_table=11 NC_008258.1 RefSeq gene 2726499 2727236 . - . ID=gene2937;Name=SFV_RS14770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14770;old_locus_tag=SFV_2657 NC_008258.1 Protein Homology CDS 2726499 2727236 . - 0 ID=cds2877;Parent=gene2937;Dbxref=Genbank:WP_000197690.1;Name=WP_000197690.1;gbkey=CDS;product=outer membrane biogenesis protein BamD;protein_id=WP_000197690.1;transl_table=11 NC_008258.1 RefSeq gene 2727371 2728351 . + . ID=gene2938;Name=rluD;gbkey=Gene;gene=rluD;gene_biotype=protein_coding;locus_tag=SFV_RS14775;old_locus_tag=SFV_2658 NC_008258.1 Protein Homology CDS 2727371 2728351 . + 0 ID=cds2878;Parent=gene2938;Dbxref=Genbank:WP_000079112.1;Name=WP_000079112.1;Note=responsible for synthesis of pseudouridine from uracil at positions 1911%2C 1915 and 1917 in 23S ribosomal RNA;gbkey=CDS;gene=rluD;product=ribosomal large subunit pseudouridine synthase D;protein_id=WP_000079112.1;transl_table=11 NC_008258.1 RefSeq gene 2728348 2729079 . + . ID=gene2939;Name=SFV_RS14780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14780;old_locus_tag=SFV_2659 NC_008258.1 Protein Homology CDS 2728348 2729079 . + 0 ID=cds2879;Parent=gene2939;Dbxref=Genbank:WP_000040142.1;Name=WP_000040142.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000040142.1;transl_table=11 NC_008258.1 RefSeq gene 2729209 2731782 . + . ID=gene2940;Name=SFV_RS14785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14785;old_locus_tag=SFV_2660 NC_008258.1 Protein Homology CDS 2729209 2731782 . + 0 ID=cds2880;Parent=gene2940;Dbxref=Genbank:WP_005051270.1;Name=WP_005051270.1;gbkey=CDS;product=chaperone protein ClpB;protein_id=WP_005051270.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2731803 2733237 . + . ID=id455;gbkey=repeat_region NC_008258.1 RefSeq region 2731806 2733232 . - . ID=id456;gbkey=mobile_element NC_008258.1 RefSeq gene 2731819 2733147 . - . ID=gene2941;Name=SFV_RS14790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14790;old_locus_tag=SFV_2661 NC_008258.1 Protein Homology CDS 2731819 2733147 . - 0 ID=cds2881;Parent=gene2941;Dbxref=Genbank:WP_000547277.1;Name=WP_000547277.1;gbkey=CDS;product=transposase;protein_id=WP_000547277.1;transl_table=11 NC_008258.1 RefSeq gene 2733249 2734613 . - . ID=gene2942;Name=SFV_RS14795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14795;old_locus_tag=SFV_2662 NC_008258.1 Protein Homology CDS 2733249 2734613 . - 0 ID=cds2882;Parent=gene2942;Dbxref=Genbank:WP_000627995.1;Name=WP_000627995.1;gbkey=CDS;product=LOG family protein YgdH;protein_id=WP_000627995.1;transl_table=11 NC_008258.1 RefSeq gene 2734725 2735573 . - . ID=gene2943;Name=queF;gbkey=Gene;gene=queF;gene_biotype=protein_coding;locus_tag=SFV_RS14800;old_locus_tag=SFV_2663 NC_008258.1 Protein Homology CDS 2734725 2735573 . - 0 ID=cds2883;Parent=gene2943;Dbxref=Genbank:WP_000100422.1;Name=WP_000100422.1;Note=catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis;gbkey=CDS;gene=queF;product=NADPH-dependent 7-cyano-7-deazaguanine reductase;protein_id=WP_000100422.1;transl_table=11 NC_008258.1 RefSeq gene 2735641 2736186 . + . ID=gene2944;Name=SFV_RS14805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14805;old_locus_tag=SFV_2664 NC_008258.1 Protein Homology CDS 2735641 2736186 . + 0 ID=cds2884;Parent=gene2944;Dbxref=Genbank:WP_000342438.1;Name=WP_000342438.1;Note=SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function;gbkey=CDS;product=protein Syd;protein_id=WP_000342438.1;transl_table=11 NC_008258.1 RefSeq gene 2736436 2736561 . + . ID=gene2945;Name=SFV_RS14810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14810 NC_008258.1 Protein Homology CDS 2736436 2736561 . + 0 ID=cds2885;Parent=gene2945;Dbxref=Genbank:WP_001393510.1;Name=WP_001393510.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001393510.1;transl_table=11 NC_008258.1 RefSeq gene 2736808 2737137 . + . ID=gene2946;Name=SFV_RS14815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14815;old_locus_tag=SFV_2665 NC_008258.1 Protein Homology CDS 2736808 2737137 . + 0 ID=cds2886;Parent=gene2946;Dbxref=Genbank:WP_000206998.1;Name=WP_000206998.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000206998.1;transl_table=11 NC_008258.1 RefSeq gene 2737137 2737919 . + . ID=gene2947;Name=SFV_RS14820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14820;old_locus_tag=SFV_2666 NC_008258.1 Protein Homology CDS 2737137 2737919 . + 0 ID=cds2887;Parent=gene2947;Dbxref=Genbank:WP_000890009.1;Name=WP_000890009.1;Note=catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp;gbkey=CDS;product=tRNA pseudouridine synthase C;protein_id=WP_000890009.1;transl_table=11 NC_008258.1 RefSeq gene 2737937 2738386 . + . ID=gene2948;Name=SFV_RS14825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14825;old_locus_tag=SFV_2667 NC_008258.1 Protein Homology CDS 2737937 2738386 . + 0 ID=cds2888;Parent=gene2948;Dbxref=Genbank:WP_000807753.1;Name=WP_000807753.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=flavodoxin;protein_id=WP_000807753.1;transl_table=11 NC_008258.1 RefSeq gene 2738820 2740172 . + . ID=gene2949;Name=SFV_RS14830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14830;old_locus_tag=SFV_2668 NC_008258.1 Protein Homology CDS 2738820 2740172 . + 0 ID=cds2889;Parent=gene2949;Dbxref=Genbank:WP_000097096.1;Name=WP_000097096.1;gbkey=CDS;product=glucarate transporter;protein_id=WP_000097096.1;transl_table=11 NC_008258.1 RefSeq gene 2740174 2741514 . + . ID=gene2950;Name=SFV_RS14835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14835;old_locus_tag=SFV_2669 NC_008258.1 Protein Homology CDS 2740174 2741514 . + 0 ID=cds2890;Parent=gene2950;Dbxref=Genbank:WP_000235403.1;Name=WP_000235403.1;gbkey=CDS;product=glucarate dehydratase;protein_id=WP_000235403.1;transl_table=11 NC_008258.1 RefSeq gene 2741535 2742875 . + . ID=gene2951;Name=gudD;gbkey=Gene;gene=gudD;gene_biotype=protein_coding;locus_tag=SFV_RS14840;old_locus_tag=SFV_2670 NC_008258.1 Protein Homology CDS 2741535 2742875 . + 0 ID=cds2891;Parent=gene2951;Dbxref=Genbank:WP_000098266.1;Name=WP_000098266.1;Note=catalyzes the formation of 5-keto-4-deoxy-D-glucarate from glucarate;gbkey=CDS;gene=gudD;product=glucarate dehydratase;protein_id=WP_000098266.1;transl_table=11 NC_008258.1 RefSeq gene 2743107 2745863 . - . ID=gene2952;Name=SFV_RS14845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14845;old_locus_tag=SFV_2671 NC_008258.1 Protein Homology CDS 2743107 2745863 . - 0 ID=cds2892;Parent=gene2952;Dbxref=Genbank:WP_000186424.1;Name=WP_000186424.1;Note=part of the two-component regulatory system with UvrY%3B involved in the regulation of carbon metabolism via the csrA/csrB regulatory system;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_000186424.1;transl_table=11 NC_008258.1 RefSeq gene 2745920 2747221 . + . ID=gene2953;Name=rumA;gbkey=Gene;gene=rumA;gene_biotype=protein_coding;locus_tag=SFV_RS14850;old_locus_tag=SFV_2672 NC_008258.1 Protein Homology CDS 2745920 2747221 . + 0 ID=cds2893;Parent=gene2953;Dbxref=Genbank:WP_000046799.1;Name=WP_000046799.1;Note=in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA%3B binds an iron-sulfur cluster [4Fe-4S];gbkey=CDS;gene=rumA;product=23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD;protein_id=WP_000046799.1;transl_table=11 NC_008258.1 RefSeq gene 2747269 2749503 . + . ID=gene2954;Name=relA;gbkey=Gene;gene=relA;gene_biotype=protein_coding;locus_tag=SFV_RS14855;old_locus_tag=SFV_2673 NC_008258.1 Protein Homology CDS 2747269 2749503 . + 0 ID=cds2894;Parent=gene2954;Dbxref=Genbank:WP_000226810.1;Name=WP_000226810.1;Note=(p)ppGpp synthetase%3B catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP;gbkey=CDS;gene=relA;product=GTP pyrophosphokinase;protein_id=WP_000226810.1;transl_table=11 NC_008258.1 RefSeq gene 2749599 2750390 . + . ID=gene2955;Name=mazG;gbkey=Gene;gene=mazG;gene_biotype=protein_coding;locus_tag=SFV_RS14860;old_locus_tag=SFV_2674 NC_008258.1 Protein Homology CDS 2749599 2750390 . + 0 ID=cds2895;Parent=gene2955;Dbxref=Genbank:WP_001071652.1;Name=WP_001071652.1;Note=functions in degradation of stringent response intracellular messenger ppGpp%3B in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF%3B activity of MazG is inhibited by MazEF in vitro%3B ppGpp inhibits mazEF expression%3B MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation%3B MazG also interacts with the GTPase protein Era;gbkey=CDS;gene=mazG;product=nucleoside triphosphate pyrophosphohydrolase;protein_id=WP_001071652.1;transl_table=11 NC_008258.1 RefSeq gene 2750618 2752255 . + . ID=gene2956;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=SFV_RS14865;old_locus_tag=SFV_2675 NC_008258.1 Protein Homology CDS 2750618 2752255 . + 0 ID=cds2896;Parent=gene2956;Dbxref=Genbank:WP_000210878.1;Name=WP_000210878.1;Note=CTP synthase%3B cytidine triphosphate synthetase%3B catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen%3B in Escherichia coli this enzyme forms a homotetramer;gbkey=CDS;gene=pyrG;product=CTP synthase;protein_id=WP_000210878.1;transl_table=11 NC_008258.1 RefSeq gene 2752343 2753638 . + . ID=gene2957;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=SFV_RS14870;old_locus_tag=SFV_2676 NC_008258.1 Protein Homology CDS 2752343 2753638 . + 0 ID=cds2897;Parent=gene2957;Dbxref=Genbank:WP_000036721.1;Name=WP_000036721.1;Note=catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis;gbkey=CDS;gene=eno;product=enolase;protein_id=WP_000036721.1;transl_table=11 NC_008258.1 RefSeq gene 2753698 2754570 . - . ID=gene2958;Name=SFV_RS14875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14875;old_locus_tag=SFV_2677 NC_008258.1 Protein Homology CDS 2753698 2754570 . - 0 ID=cds2898;Parent=gene2958;Dbxref=Genbank:WP_001268465.1;Name=WP_001268465.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001268465.1;transl_table=11 NC_008258.1 RefSeq gene 2754584 2754670 . - . ID=gene2959;Name=SFV_RS14880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14880 NC_008258.1 Protein Homology CDS 2754584 2754670 . - 0 ID=cds2899;Parent=gene2959;Dbxref=Genbank:WP_032149979.1;Name=WP_032149979.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032149979.1;transl_table=11 NC_008258.1 RefSeq gene 2754863 2755534 . + . ID=gene2960;Name=SFV_RS14885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14885;old_locus_tag=SFV_2678 NC_008258.1 Protein Homology CDS 2754863 2755534 . + 0 ID=cds2900;Parent=gene2960;Dbxref=Genbank:WP_001199952.1;Name=WP_001199952.1;gbkey=CDS;product=7-carboxy-7-deazaguanine synthase;protein_id=WP_001199952.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2755556 2756328 . + . ID=id457;gbkey=repeat_region NC_008258.1 RefSeq region 2755558 2756325 . - . ID=id458;gbkey=mobile_element NC_008258.1 RefSeq gene 2755573 2755866 . - . ID=gene2961;Name=SFV_RS14890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14890;old_locus_tag=SFV_2679 NC_008258.1 Protein Homology CDS 2755573 2755866 . - 0 ID=cds2901;Parent=gene2961;Dbxref=Genbank:WP_000951587.1;Name=WP_000951587.1;gbkey=CDS;product=transposase;protein_id=WP_000951587.1;transl_table=11 NC_008258.1 RefSeq gene 2755995 2756270 . - . ID=gene2962;Name=SFV_RS14895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14895 NC_008258.1 Protein Homology CDS 2755995 2756270 . - 0 ID=cds2902;Parent=gene2962;Dbxref=Genbank:WP_044024073.1;Name=WP_044024073.1;gbkey=CDS;product=transposase;protein_id=WP_044024073.1;transl_table=11 NC_008258.1 RefSeq gene 2756385 2757179 . + . ID=gene2963;Name=SFV_RS14900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14900 NC_008258.1 Protein Homology CDS 2756385 2757179 . + 0 ID=cds2903;Parent=gene2963;Dbxref=Genbank:WP_024260296.1;Name=WP_024260296.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_024260296.1;transl_table=11 NC_008258.1 RefSeq gene 2757273 2758610 . + . ID=gene2964;Name=SFV_RS14905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14905;old_locus_tag=SFV_2682 NC_008258.1 Protein Homology CDS 2757273 2758610 . + 0 ID=cds2904;Parent=gene2964;Dbxref=Genbank:WP_001098116.1;Name=WP_001098116.1;gbkey=CDS;product=MFS transporter;protein_id=WP_001098116.1;transl_table=11 NC_008258.1 RefSeq gene 2758588 2759367 . + . ID=gene2965;Name=SFV_RS14910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14910;old_locus_tag=SFV_2683 NC_008258.1 Protein Homology CDS 2758588 2759367 . + 0 ID=cds2905;Parent=gene2965;Dbxref=Genbank:WP_005051549.1;Name=WP_005051549.1;gbkey=CDS;product=transporter;protein_id=WP_005051549.1;transl_table=11 NC_008258.1 RefSeq gene 2759364 2760224 . + . ID=gene2966;Name=SFV_RS14915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14915;old_locus_tag=SFV_2684 NC_008258.1 Protein Homology CDS 2759364 2760224 . + 0 ID=cds2906;Parent=gene2966;Dbxref=Genbank:WP_005051545.1;Name=WP_005051545.1;gbkey=CDS;product=electron transfer flavoprotein;protein_id=WP_005051545.1;transl_table=11 NC_008258.1 RefSeq gene 2760372 2760947 . - . ID=gene2967;Name=SFV_RS14920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14920;pseudo=true NC_008258.1 Protein Homology CDS 2760372 2760947 . - 0 ID=cds2907;Parent=gene2967;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2760582..2760584)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2761046 2761736 . - . ID=gene2968;Name=SFV_RS14925;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14925;pseudo=true NC_008258.1 Protein Homology CDS 2761046 2761736 . - 0 ID=cds2908;Parent=gene2968;exception=annotated by transcript or proteomic data;gbkey=CDS;product=integrase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2761981 2763249 . + . ID=id459;gbkey=repeat_region NC_008258.1 RefSeq region 2761983 2763246 . - . ID=id460;gbkey=mobile_element NC_008258.1 RefSeq gene 2762026 2762739 . - . ID=gene2969;Name=SFV_RS14930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14930;old_locus_tag=SFV_2687 NC_008258.1 Protein Homology CDS 2762026 2762739 . - 0 ID=cds2909;Parent=gene2969;Dbxref=Genbank:WP_005105710.1;Name=WP_005105710.1;gbkey=CDS;product=transposase;protein_id=WP_005105710.1;transl_table=11 NC_008258.1 RefSeq gene 2762880 2763182 . - . ID=gene2970;Name=SFV_RS14935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14935;old_locus_tag=SFV_2688 NC_008258.1 Protein Homology CDS 2762880 2763182 . - 0 ID=cds2910;Parent=gene2970;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 2763458 2766364 . + . ID=gene2971;Name=SFV_RS14940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14940;old_locus_tag=SFV_2689 NC_008258.1 Protein Homology CDS 2763458 2766364 . + 0 ID=cds2911;Parent=gene2971;Dbxref=Genbank:WP_005105712.1;Name=WP_005105712.1;gbkey=CDS;product=replication protein P;protein_id=WP_005105712.1;transl_table=11 NC_008258.1 RefSeq gene 2766439 2766715 . + . ID=gene2972;Name=SFV_RS14945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS14945;old_locus_tag=SFV_2690;pseudo=true NC_008258.1 Protein Homology CDS 2766439 2766715 . + 0 ID=cds2912;Parent=gene2972;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2766712 2767122 . + . ID=gene2973;Name=SFV_RS14950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14950;old_locus_tag=SFV_2691 NC_008258.1 Protein Homology CDS 2766712 2767122 . + 0 ID=cds2913;Parent=gene2973;Dbxref=Genbank:WP_000814621.1;Name=WP_000814621.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000814621.1;transl_table=11 NC_008258.1 RefSeq gene 2767119 2767295 . + . ID=gene2974;Name=SFV_RS14955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14955 NC_008258.1 Protein Homology CDS 2767119 2767295 . + 0 ID=cds2914;Parent=gene2974;Dbxref=Genbank:WP_024260406.1;Name=WP_024260406.1;gbkey=CDS;product=protein ninE;protein_id=WP_024260406.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2767141 2767296 . + . ID=id461;gbkey=repeat_region NC_008258.1 RefSeq gene 2767337 2767645 . - . ID=gene2975;Name=SFV_RS14960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14960;old_locus_tag=SFV_2693 NC_008258.1 Protein Homology CDS 2767337 2767645 . - 0 ID=cds2915;Parent=gene2975;Dbxref=Genbank:WP_000147081.1;Name=WP_000147081.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_000147081.1;transl_table=11 NC_008258.1 RefSeq gene 2767830 2768336 . + . ID=gene2976;Name=SFV_RS14965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14965 NC_008258.1 Protein Homology CDS 2767830 2768336 . + 0 ID=cds2916;Parent=gene2976;Dbxref=Genbank:WP_044024397.1;Name=WP_044024397.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024397.1;transl_table=11 NC_008258.1 RefSeq gene 2768463 2768846 . + . ID=gene2977;Name=SFV_RS24525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24525;old_locus_tag=SFV_2694 NC_008258.1 Protein Homology CDS 2768463 2768846 . + 0 ID=cds2917;Parent=gene2977;Dbxref=Genbank:WP_000252174.1;Name=WP_000252174.1;gbkey=CDS;product=Rha family transcriptional regulator;protein_id=WP_000252174.1;transl_table=11 NC_008258.1 RefSeq gene 2768843 2769076 . + . ID=gene2978;Name=SFV_RS14975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14975 NC_008258.1 Protein Homology CDS 2768843 2769076 . + 0 ID=cds2918;Parent=gene2978;Dbxref=Genbank:WP_000618003.1;Name=WP_000618003.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000618003.1;transl_table=11 NC_008258.1 RefSeq gene 2769063 2769971 . + . ID=gene2979;Name=SFV_RS14980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14980;old_locus_tag=SFV_2695 NC_008258.1 Protein Homology CDS 2769063 2769971 . + 0 ID=cds2919;Parent=gene2979;Dbxref=Genbank:WP_001247829.1;Name=WP_001247829.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001247829.1;transl_table=11 NC_008258.1 RefSeq gene 2769982 2770860 . + . ID=gene2980;Name=SFV_RS14985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14985;old_locus_tag=SFV_2696 NC_008258.1 Protein Homology CDS 2769982 2770860 . + 0 ID=cds2920;Parent=gene2980;Dbxref=Genbank:WP_000988183.1;Name=WP_000988183.1;gbkey=CDS;product=ATPase AAA;protein_id=WP_000988183.1;transl_table=11 NC_008258.1 RefSeq gene 2770857 2772248 . + . ID=gene2981;Name=SFV_RS14990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14990;old_locus_tag=SFV_2697 NC_008258.1 Protein Homology CDS 2770857 2772248 . + 0 ID=cds2921;Parent=gene2981;Dbxref=Genbank:WP_000211321.1;Name=WP_000211321.1;gbkey=CDS;product=helicase;protein_id=WP_000211321.1;transl_table=11 NC_008258.1 RefSeq gene 2772260 2772502 . + . ID=gene2982;Name=SFV_RS14995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS14995;old_locus_tag=SFV_2698 NC_008258.1 Protein Homology CDS 2772260 2772502 . + 0 ID=cds2922;Parent=gene2982;Dbxref=Genbank:WP_001343960.1;Name=WP_001343960.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001343960.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2772363 2772516 . + . ID=id462;gbkey=repeat_region NC_008258.1 RefSeq gene 2772595 2772795 . + . ID=gene2983;Name=SFV_RS15000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15000;old_locus_tag=SFV_2699 NC_008258.1 Protein Homology CDS 2772595 2772795 . + 0 ID=cds2923;Parent=gene2983;Dbxref=Genbank:WP_000111769.1;Name=WP_000111769.1;gbkey=CDS;product=protein ninH;protein_id=WP_000111769.1;transl_table=11 NC_008258.1 RefSeq gene 2772788 2773168 . + . ID=gene2984;Name=SFV_RS15005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15005 NC_008258.1 Protein Homology CDS 2772788 2773168 . + 0 ID=cds2924;Parent=gene2984;Dbxref=Genbank:WP_001204832.1;Name=WP_001204832.1;gbkey=CDS;product=antitermination protein;protein_id=WP_001204832.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2773255 2775866 . + . ID=id463;gbkey=repeat_region NC_008258.1 RefSeq gene 2773368 2773444 . + . ID=gene2985;Name=SFV_RS15010;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15010;old_locus_tag=SFV_2700 NC_008258.1 tRNAscan-SE tRNA 2773368 2773444 . + . ID=rna60;Parent=gene2985;anticodon=(pos:2773402..2773404);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 2773368 2773444 . + . ID=id464;Parent=rna60;anticodon=(pos:2773402..2773404);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 2773446 2773522 . + . ID=gene2986;Name=SFV_RS15015;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15015;old_locus_tag=SFV_2701 NC_008258.1 tRNAscan-SE tRNA 2773446 2773522 . + . ID=rna61;Parent=gene2986;anticodon=(pos:2773480..2773482);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 2773446 2773522 . + . ID=id465;Parent=rna61;anticodon=(pos:2773480..2773482);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 2773525 2773600 . + . ID=gene2987;Name=SFV_RS15020;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15020;old_locus_tag=SFV_2702 NC_008258.1 tRNAscan-SE tRNA 2773525 2773600 . + . ID=rna62;Parent=gene2987;anticodon=(pos:2773558..2773560);gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 2773525 2773600 . + . ID=id466;Parent=rna62;anticodon=(pos:2773558..2773560);gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 2773604 2773678 . + . ID=gene2988;Name=SFV_RS15025;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15025;old_locus_tag=SFV_2703 NC_008258.1 tRNAscan-SE tRNA 2773604 2773678 . + . ID=rna63;Parent=gene2988;anticodon=(pos:2773637..2773639);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 2773604 2773678 . + . ID=id467;Parent=rna63;anticodon=(pos:2773637..2773639);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 2773971 2774186 . + . ID=gene2989;Name=SFV_RS15030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15030;old_locus_tag=SFV_2704 NC_008258.1 Protein Homology CDS 2773971 2774186 . + 0 ID=cds2925;Parent=gene2989;Dbxref=Genbank:WP_000839566.1;Name=WP_000839566.1;gbkey=CDS;product=holin;protein_id=WP_000839566.1;transl_table=11 NC_008258.1 RefSeq gene 2774260 2774820 . + . ID=gene2990;Name=SFV_RS15035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15035;old_locus_tag=SFV_2705 NC_008258.1 Protein Homology CDS 2774260 2774820 . + 0 ID=cds2926;Parent=gene2990;Dbxref=Genbank:WP_005105718.1;Name=WP_005105718.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105718.1;transl_table=11 NC_008258.1 RefSeq gene 2774886 2775419 . + . ID=gene2991;Name=SFV_RS15040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15040;old_locus_tag=SFV_2706 NC_008258.1 Protein Homology CDS 2774886 2775419 . + 0 ID=cds2927;Parent=gene2991;Dbxref=Genbank:WP_001274721.1;Name=WP_001274721.1;gbkey=CDS;product=lysozyme;protein_id=WP_001274721.1;transl_table=11 NC_008258.1 RefSeq gene 2775416 2775883 . + . ID=gene2992;Name=SFV_RS15045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15045;old_locus_tag=SFV_2707 NC_008258.1 Protein Homology CDS 2775416 2775883 . + 0 ID=cds2928;Parent=gene2992;Dbxref=Genbank:WP_000092287.1;Name=WP_000092287.1;gbkey=CDS;product=endopeptidase;protein_id=WP_000092287.1;transl_table=11 NC_008258.1 RefSeq gene 2776086 2776268 . + . ID=gene2993;Name=SFV_RS15050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15050 NC_008258.1 Protein Homology CDS 2776086 2776268 . + 0 ID=cds2929;Parent=gene2993;Dbxref=Genbank:WP_001043310.1;Name=WP_001043310.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001043310.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2776264 2777533 . + . ID=id468;gbkey=repeat_region NC_008258.1 RefSeq region 2776266 2777529 . - . ID=id469;gbkey=mobile_element NC_008258.1 RefSeq gene 2776309 2777022 . - . ID=gene2994;Name=SFV_RS15055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15055;old_locus_tag=SFV_2708 NC_008258.1 Protein Homology CDS 2776309 2777022 . - 0 ID=cds2930;Parent=gene2994;Dbxref=Genbank:WP_000940368.1;Name=WP_000940368.1;gbkey=CDS;product=transposase;protein_id=WP_000940368.1;transl_table=11 NC_008258.1 RefSeq gene 2777163 2777465 . - . ID=gene2995;Name=SFV_RS15060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15060;old_locus_tag=SFV_2709 NC_008258.1 Protein Homology CDS 2777163 2777465 . - 0 ID=cds2931;Parent=gene2995;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 2777530 2777949 . + . ID=gene2996;Name=SFV_RS15065;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15065;partial=true;pseudo=true;start_range=.,2777530 NC_008258.1 Protein Homology CDS 2777530 2777949 . + 0 ID=cds2932;Parent=gene2996;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=Rha family transcriptional regulator;pseudo=true;start_range=.,2777530;transl_table=11 NC_008258.1 RefSeq gene 2777946 2778158 . + . ID=gene2997;Name=SFV_RS15070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15070 NC_008258.1 Protein Homology CDS 2777946 2778158 . + 0 ID=cds2933;Parent=gene2997;Dbxref=Genbank:WP_000187851.1;Name=WP_000187851.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000187851.1;transl_table=11 NC_008258.1 RefSeq gene 2778365 2778678 . + . ID=gene2998;Name=SFV_RS15075;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15075;partial=true;pseudo=true;start_range=.,2778365 NC_008258.1 Protein Homology CDS 2778365 2778678 . + 0 ID=cds2934;Parent=gene2998;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,2778365;transl_except=(pos:2778479..2778481%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2778830 2779042 . + . ID=gene2999;Name=SFV_RS15080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15080 NC_008258.1 Protein Homology CDS 2778830 2779042 . + 0 ID=cds2935;Parent=gene2999;Dbxref=Genbank:WP_005107083.1;Name=WP_005107083.1;gbkey=CDS;product=protein convertase;protein_id=WP_005107083.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2779030 2781614 . + . ID=id470;gbkey=repeat_region NC_008258.1 RefSeq region 2779035 2779218 . + . ID=id471;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq region 2779218 2780527 . - . ID=id472;gbkey=mobile_element NC_008258.1 RefSeq gene 2779260 2780147 . - . ID=gene3000;Name=SFV_RS15090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15090;old_locus_tag=SFV_2711 NC_008258.1 Protein Homology CDS 2779260 2780147 . - 0 ID=cds2936;Parent=gene3000;Dbxref=Genbank:WP_011587264.1;Name=WP_011587264.1;gbkey=CDS;product=transposase;protein_id=WP_011587264.1;transl_table=11 NC_008258.1 RefSeq gene 2780147 2780473 . - . ID=gene3001;Name=SFV_RS15095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15095;old_locus_tag=SFV_2712 NC_008258.1 Protein Homology CDS 2780147 2780473 . - 0 ID=cds2937;Parent=gene3001;Dbxref=Genbank:WP_000165225.1;Name=WP_000165225.1;gbkey=CDS;product=transposase;protein_id=WP_000165225.1;transl_table=11 NC_008258.1 RefSeq region 2780528 2781611 . + . ID=id473;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2780589 2780714 . + . ID=gene3002;Name=SFV_RS15100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15100;old_locus_tag=SFV_2713 NC_008258.1 Protein Homology CDS 2780589 2780714 . + 0 ID=cds2938;Parent=gene3002;Dbxref=Genbank:WP_000818815.1;Name=WP_000818815.1;gbkey=CDS;product=transposase;protein_id=WP_000818815.1;transl_table=11 NC_008258.1 RefSeq gene 2780750 2781568 . + . ID=gene3003;Name=SFV_RS15105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15105;old_locus_tag=SFV_2714 NC_008258.1 Protein Homology CDS 2780750 2781568 . + 0 ID=cds2939;Parent=gene3003;Dbxref=Genbank:WP_000336644.1;Name=WP_000336644.1;gbkey=CDS;product=transposase;protein_id=WP_000336644.1;transl_table=11 NC_008258.1 RefSeq gene 2781596 2781919 . + . ID=gene3004;Name=SFV_RS15110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15110;old_locus_tag=SFV_2715 NC_008258.1 Protein Homology CDS 2781596 2781919 . + 0 ID=cds2940;Parent=gene3004;Dbxref=Genbank:WP_001143999.1;Name=WP_001143999.1;gbkey=CDS;product=DNA packaging protein;protein_id=WP_001143999.1;transl_table=11 NC_008258.1 RefSeq gene 2781891 2783819 . + . ID=gene3005;Name=SFV_RS15115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15115;old_locus_tag=SFV_2716 NC_008258.1 Protein Homology CDS 2781891 2783819 . + 0 ID=cds2941;Parent=gene3005;Dbxref=Genbank:WP_001026849.1;Name=WP_001026849.1;gbkey=CDS;product=terminase;protein_id=WP_001026849.1;transl_table=11 NC_008258.1 RefSeq gene 2783803 2784006 . + . ID=gene3006;Name=SFV_RS15120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15120 NC_008258.1 Protein Homology CDS 2783803 2784006 . + 0 ID=cds2942;Parent=gene3006;Dbxref=Genbank:WP_000259004.1;Name=WP_000259004.1;gbkey=CDS;product=head-tail joining protein;protein_id=WP_000259004.1;transl_table=11 NC_008258.1 RefSeq gene 2784003 2785058 . + . ID=gene3007;Name=SFV_RS15125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15125;old_locus_tag=SFV_2717 NC_008258.1 Protein Homology CDS 2784003 2785058 . + 0 ID=cds2943;Parent=gene3007;Dbxref=Genbank:WP_005049596.1;Name=WP_005049596.1;gbkey=CDS;product=head-tail joining protein;protein_id=WP_005049596.1;transl_table=11 NC_008258.1 RefSeq gene 2784973 2785596 . + . ID=gene3008;Name=SFV_RS15130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15130 NC_008258.1 Protein Homology CDS 2784973 2785596 . + 0 ID=cds2944;Parent=gene3008;Dbxref=Genbank:WP_044024074.1;Name=WP_044024074.1;gbkey=CDS;product=head-tail joining protein;protein_id=WP_044024074.1;transl_table=11 NC_008258.1 RefSeq gene 2785586 2787091 . + . ID=gene3009;Name=SFV_RS15135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15135;old_locus_tag=SFV_2719 NC_008258.1 Protein Homology CDS 2785586 2787091 . + 0 ID=cds2945;Parent=gene3009;Dbxref=Genbank:WP_001254016.1;Name=WP_001254016.1;gbkey=CDS;product=scaffold protein;protein_id=WP_001254016.1;transl_table=11 NC_008258.1 RefSeq gene 2787128 2787475 . + . ID=gene3010;Name=SFV_RS15140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15140;old_locus_tag=SFV_2720 NC_008258.1 Protein Homology CDS 2787128 2787475 . + 0 ID=cds2946;Parent=gene3010;Dbxref=Genbank:WP_000256830.1;Name=WP_000256830.1;gbkey=CDS;product=Head decoration protein;protein_id=WP_000256830.1;transl_table=11 NC_008258.1 RefSeq gene 2787533 2788561 . + . ID=gene3011;Name=SFV_RS15145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15145;old_locus_tag=SFV_2721 NC_008258.1 Protein Homology CDS 2787533 2788561 . + 0 ID=cds2947;Parent=gene3011;Dbxref=Genbank:WP_000522637.1;Name=WP_000522637.1;gbkey=CDS;product=head protein;protein_id=WP_000522637.1;transl_table=11 NC_008258.1 RefSeq gene 2788613 2788999 . + . ID=gene3012;Name=SFV_RS15150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15150;old_locus_tag=SFV_2722 NC_008258.1 Protein Homology CDS 2788613 2788999 . + 0 ID=cds2948;Parent=gene3012;Dbxref=Genbank:WP_000201488.1;Name=WP_000201488.1;gbkey=CDS;product=DNA-packaging protein FI;protein_id=WP_000201488.1;transl_table=11 NC_008258.1 RefSeq gene 2789011 2789364 . + . ID=gene3013;Name=SFV_RS15155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15155;old_locus_tag=SFV_2723 NC_008258.1 Protein Homology CDS 2789011 2789364 . + 0 ID=cds2949;Parent=gene3013;Dbxref=Genbank:WP_000348592.1;Name=WP_000348592.1;gbkey=CDS;product=tail attachment protein;protein_id=WP_000348592.1;transl_table=11 NC_008258.1 RefSeq gene 2789374 2789955 . + . ID=gene3014;Name=SFV_RS15160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15160;old_locus_tag=SFV_2724 NC_008258.1 Protein Homology CDS 2789374 2789955 . + 0 ID=cds2950;Parent=gene3014;Dbxref=Genbank:WP_000677139.1;Name=WP_000677139.1;gbkey=CDS;product=tail protein;protein_id=WP_000677139.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2789827 2804548 . + . ID=id474;gbkey=repeat_region NC_008258.1 RefSeq gene 2789952 2790353 . + . ID=gene3015;Name=SFV_RS15165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15165;old_locus_tag=SFV_2725 NC_008258.1 Protein Homology CDS 2789952 2790353 . + 0 ID=cds2951;Parent=gene3015;Dbxref=Genbank:WP_001079402.1;Name=WP_001079402.1;gbkey=CDS;product=tail protein;protein_id=WP_001079402.1;transl_table=11 NC_008258.1 RefSeq gene 2790364 2791104 . + . ID=gene3016;Name=SFV_RS15170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15170;old_locus_tag=SFV_2726 NC_008258.1 Protein Homology CDS 2790364 2791104 . + 0 ID=cds2952;Parent=gene3016;Dbxref=Genbank:WP_000211137.1;Name=WP_000211137.1;gbkey=CDS;product=tail protein;protein_id=WP_000211137.1;transl_table=11 NC_008258.1 RefSeq gene 2791163 2791549 . + . ID=gene3017;Name=SFV_RS15175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15175;old_locus_tag=SFV_2727 NC_008258.1 Protein Homology CDS 2791163 2791549 . + 0 ID=cds2953;Parent=gene3017;Dbxref=Genbank:WP_000478927.1;Name=WP_000478927.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000478927.1;transl_table=11 NC_008258.1 RefSeq gene 2791570 2791887 . + . ID=gene3018;Name=SFV_RS15180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15180;old_locus_tag=SFV_2728 NC_008258.1 Protein Homology CDS 2791570 2791887 . + 0 ID=cds2954;Parent=gene3018;Dbxref=Genbank:WP_005047552.1;Name=WP_005047552.1;gbkey=CDS;product=tail protein;protein_id=WP_005047552.1;transl_table=11 NC_008258.1 RefSeq gene 2791859 2794901 . + . ID=gene3019;Name=SFV_RS15185;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15185;pseudo=true NC_008258.1 Protein Homology CDS 2791859 2794901 . + 0 ID=cds2955;Parent=gene3019;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phage tail protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2795144 2795842 . + . ID=gene3020;Name=SFV_RS15190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15190 NC_008258.1 Protein Homology CDS 2795144 2795842 . + 0 ID=cds2956;Parent=gene3020;Dbxref=Genbank:WP_001152490.1;Name=WP_001152490.1;gbkey=CDS;product=tail protein;protein_id=WP_001152490.1;transl_table=11 NC_008258.1 RefSeq gene 2795991 2796590 . + . ID=gene3021;Name=SFV_RS15195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15195 NC_008258.1 Protein Homology CDS 2795991 2796590 . + 0 ID=cds2957;Parent=gene3021;Dbxref=Genbank:WP_005042174.1;Name=WP_005042174.1;gbkey=CDS;product=endopeptidase;protein_id=WP_005042174.1;transl_table=11 NC_008258.1 RefSeq gene 2796587 2797129 . + . ID=gene3022;Name=SFV_RS15200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15200;old_locus_tag=SFV_2732 NC_008258.1 Protein Homology CDS 2796587 2797129 . + 0 ID=cds2958;Parent=gene3022;Dbxref=Genbank:WP_000847648.1;Name=WP_000847648.1;gbkey=CDS;product=tail protein;protein_id=WP_000847648.1;transl_table=11 NC_008258.1 RefSeq gene 2797190 2800669 . + . ID=gene3023;Name=SFV_RS15205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15205;old_locus_tag=SFV_2733 NC_008258.1 Protein Homology CDS 2797190 2800669 . + 0 ID=cds2959;Parent=gene3023;Dbxref=Genbank:WP_000515521.1;Name=WP_000515521.1;gbkey=CDS;product=host specificity protein J;protein_id=WP_000515521.1;transl_table=11 NC_008258.1 RefSeq gene 2800737 2801336 . + . ID=gene3024;Name=SFV_RS15210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15210;old_locus_tag=SFV_2734 NC_008258.1 Protein Homology CDS 2800737 2801336 . + 0 ID=cds2960;Parent=gene3024;Dbxref=Genbank:WP_001230369.1;Name=WP_001230369.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001230369.1;transl_table=11 NC_008258.1 RefSeq gene 2801400 2802815 . + . ID=gene3025;Name=SFV_RS15215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15215;old_locus_tag=SFV_2735 NC_008258.1 Protein Homology CDS 2801400 2802815 . + 0 ID=cds2961;Parent=gene3025;Dbxref=Genbank:WP_000268794.1;Name=WP_000268794.1;gbkey=CDS;product=tail protein;protein_id=WP_000268794.1;transl_table=11 NC_008258.1 RefSeq gene 2802766 2803389 . + . ID=gene3026;Name=SFV_RS15220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15220;old_locus_tag=SFV_2736 NC_008258.1 Protein Homology CDS 2802766 2803389 . + 0 ID=cds2962;Parent=gene3026;Dbxref=Genbank:WP_000930151.1;Name=WP_000930151.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000930151.1;transl_table=11 NC_008258.1 RefSeq gene 2803389 2803568 . + . ID=gene3027;Name=SFV_RS15225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15225 NC_008258.1 Protein Homology CDS 2803389 2803568 . + 0 ID=cds2963;Parent=gene3027;Dbxref=Genbank:WP_001039885.1;Name=WP_001039885.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001039885.1;transl_table=11 NC_008258.1 RefSeq gene 2803569 2805332 . - . ID=gene3028;Name=SFV_RS15230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15230;old_locus_tag=SFV_2737 NC_008258.1 Protein Homology CDS 2803569 2805332 . - 0 ID=cds2964;Parent=gene3028;Dbxref=Genbank:WP_000801164.1;Name=WP_000801164.1;gbkey=CDS;product=E3 ubiquitin--protein ligase;protein_id=WP_000801164.1;transl_table=11 NC_008258.1 RefSeq gene 2805442 2805621 . + . ID=gene3029;Name=SFV_RS15235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15235 NC_008258.1 Protein Homology CDS 2805442 2805621 . + 0 ID=cds2965;Parent=gene3029;Dbxref=Genbank:WP_000266133.1;Name=WP_000266133.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000266133.1;transl_table=11 NC_008258.1 RefSeq gene 2805816 2806076 . - . ID=gene3030;Name=SFV_RS15240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15240;old_locus_tag=SFV_2738 NC_008258.1 Protein Homology CDS 2805816 2806076 . - 0 ID=cds2966;Parent=gene3030;Dbxref=Genbank:WP_000109522.1;Name=WP_000109522.1;gbkey=CDS;product=ferredoxin;protein_id=WP_000109522.1;transl_table=11 NC_008258.1 RefSeq gene 2806067 2807338 . - . ID=gene3031;Name=SFV_RS15245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15245;old_locus_tag=SFV_2739 NC_008258.1 Protein Homology CDS 2806067 2807338 . - 0 ID=cds2967;Parent=gene3031;Dbxref=Genbank:WP_005070644.1;Name=WP_005070644.1;gbkey=CDS;product=FAD-dependent oxidoreductase;protein_id=WP_005070644.1;transl_table=11 NC_008258.1 RefSeq gene 2807416 2807778 . - . ID=gene3032;Name=SFV_RS15250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15250;old_locus_tag=SFV_2740 NC_008258.1 Protein Homology CDS 2807416 2807778 . - 0 ID=cds2968;Parent=gene3032;Dbxref=Genbank:WP_000108294.1;Name=WP_000108294.1;gbkey=CDS;product=6-carboxy-5%2C6%2C7%2C8-tetrahydropterin synthase;protein_id=WP_000108294.1;transl_table=11 NC_008258.1 RefSeq gene 2808097 2809896 . + . ID=gene3033;Name=cysJ;gbkey=Gene;gene=cysJ;gene_biotype=protein_coding;locus_tag=SFV_RS15255;old_locus_tag=SFV_2741 NC_008258.1 Protein Homology CDS 2808097 2809896 . + 0 ID=cds2969;Parent=gene3033;Dbxref=Genbank:WP_000211949.1;Name=WP_000211949.1;Note=catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate%3B a flavoprotein with flavin reductase activity;gbkey=CDS;gene=cysJ;product=sulfite reductase subunit alpha;protein_id=WP_000211949.1;transl_table=11 NC_008258.1 RefSeq gene 2809896 2811608 . + . ID=gene3034;Name=SFV_RS15260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15260;old_locus_tag=SFV_2742 NC_008258.1 Protein Homology CDS 2809896 2811608 . + 0 ID=cds2970;Parent=gene3034;Dbxref=Genbank:WP_001290718.1;Name=WP_001290718.1;Note=hemoprotein%3B NADPH dependent%3B with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide;gbkey=CDS;product=sulfite reductase subunit beta;protein_id=WP_001290718.1;transl_table=11 NC_008258.1 RefSeq gene 2811682 2812416 . + . ID=gene3035;Name=SFV_RS15265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15265;old_locus_tag=SFV_2743 NC_008258.1 Protein Homology CDS 2811682 2812416 . + 0 ID=cds2971;Parent=gene3035;Dbxref=Genbank:WP_000039839.1;Name=WP_000039839.1;Note=catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite;gbkey=CDS;product=phosphoadenosine phosphosulfate reductase;protein_id=WP_000039839.1;transl_table=11 NC_008258.1 RefSeq gene 2812680 2812832 . + . ID=gene3036;Name=SFV_RS15270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15270 NC_008258.1 Protein Homology CDS 2812680 2812832 . + 0 ID=cds2972;Parent=gene3036;Dbxref=Genbank:WP_000956458.1;Name=WP_000956458.1;gbkey=CDS;product=protein hokG;protein_id=WP_000956458.1;transl_table=11 NC_008258.1 RefSeq gene 2813026 2814117 . + . ID=gene3037;Name=SFV_RS15275;end_range=2814117,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15275;old_locus_tag=SFV_2744;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2813026 2814117 . + 0 ID=cds2973;Parent=gene3037;end_range=2814117,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=helicase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2814263 2815300 . - . ID=gene3038;Name=SFV_RS15280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15280;old_locus_tag=SFV_2745 NC_008258.1 Protein Homology CDS 2814263 2815300 . - 0 ID=cds2974;Parent=gene3038;Dbxref=Genbank:WP_000490389.1;Name=WP_000490389.1;Note=catalyzes the sequential removal of 2 amino-terminal arginines from alkaline phosphatase isozyme 1 to form isozymes 2 and 3;gbkey=CDS;product=alkaline phosphatase isozyme conversion aminopeptidase;protein_id=WP_000490389.1;transl_table=11 NC_008258.1 RefSeq gene 2815552 2816460 . + . ID=gene3039;Name=SFV_RS15285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15285;old_locus_tag=SFV_2746 NC_008258.1 Protein Homology CDS 2815552 2816460 . + 0 ID=cds2975;Parent=gene3039;Dbxref=Genbank:WP_000372392.1;Name=WP_000372392.1;Note=with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP;gbkey=CDS;product=sulfate adenylyltransferase subunit 2;protein_id=WP_000372392.1;transl_table=11 NC_008258.1 RefSeq gene 2816462 2817889 . + . ID=gene3040;Name=cysN;gbkey=Gene;gene=cysN;gene_biotype=protein_coding;locus_tag=SFV_RS15290;old_locus_tag=SFV_2747 NC_008258.1 Protein Homology CDS 2816462 2817889 . + 0 ID=cds2976;Parent=gene3040;Dbxref=Genbank:WP_001098972.1;Name=WP_001098972.1;Note=may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step%3B forms a heterodimer with CysD%3B part of the GTP-binding elongation factor family CysN/NodQ;gbkey=CDS;gene=cysN;product=sulfate adenylyltransferase subunit 1;protein_id=WP_001098972.1;transl_table=11 NC_008258.1 RefSeq gene 2817889 2818494 . + . ID=gene3041;Name=SFV_RS15295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15295;old_locus_tag=SFV_2748 NC_008258.1 Protein Homology CDS 2817889 2818494 . + 0 ID=cds2977;Parent=gene3041;Dbxref=Genbank:WP_001173673.1;Name=WP_001173673.1;Note=converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate%3B in Escherichia coli this enzyme functions in cysteine biosynthesis;gbkey=CDS;product=adenylyl-sulfate kinase;protein_id=WP_001173673.1;transl_table=11 NC_008258.1 RefSeq gene 2818544 2818867 . + . ID=gene3042;Name=SFV_RS15300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15300;old_locus_tag=SFV_2749 NC_008258.1 Protein Homology CDS 2818544 2818867 . + 0 ID=cds2978;Parent=gene3042;Dbxref=Genbank:WP_001246104.1;Name=WP_001246104.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001246104.1;transl_table=11 NC_008258.1 RefSeq gene 2819061 2819372 . + . ID=gene3043;Name=ftsB;gbkey=Gene;gene=ftsB;gene_biotype=protein_coding;locus_tag=SFV_RS15305;old_locus_tag=SFV_2750 NC_008258.1 Protein Homology CDS 2819061 2819372 . + 0 ID=cds2979;Parent=gene3043;Dbxref=Genbank:WP_000517472.1;Name=WP_000517472.1;Note=forms a complex with FtsL and FtsQ%3B colocalizes to the septal region of the dividing cell%3B membrane protein;gbkey=CDS;gene=ftsB;product=cell division protein FtsB;protein_id=WP_000517472.1;transl_table=11 NC_008258.1 RefSeq gene 2819391 2820101 . + . ID=gene3044;Name=SFV_RS15310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15310;old_locus_tag=SFV_2751 NC_008258.1 Protein Homology CDS 2819391 2820101 . + 0 ID=cds2980;Parent=gene3044;Dbxref=Genbank:WP_000246155.1;Name=WP_000246155.1;gbkey=CDS;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase;protein_id=WP_000246155.1;transl_table=11 NC_008258.1 RefSeq gene 2820101 2820580 . + . ID=gene3045;Name=ispF;gbkey=Gene;gene=ispF;gene_biotype=protein_coding;locus_tag=SFV_RS15315;old_locus_tag=SFV_2752 NC_008258.1 Protein Homology CDS 2820101 2820580 . + 0 ID=cds2981;Parent=gene3045;Dbxref=Genbank:WP_001219242.1;Name=WP_001219242.1;Note=catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate;gbkey=CDS;gene=ispF;product=2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=WP_001219242.1;transl_table=11 NC_008258.1 RefSeq gene 2820577 2821626 . + . ID=gene3046;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;gene_synonym=ygbO;locus_tag=SFV_RS15320;old_locus_tag=SFV_2753 NC_008258.1 Protein Homology CDS 2820577 2821626 . + 0 ID=cds2982;Parent=gene3046;Dbxref=Genbank:WP_000568916.1;Name=WP_000568916.1;Note=catalyzes the modification of U13 in tRNA(Glu);gbkey=CDS;gene=truD;product=tRNA pseudouridine synthase D;protein_id=WP_000568916.1;transl_table=11 NC_008258.1 RefSeq gene 2821607 2822368 . + . ID=gene3047;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=SFV_RS15325;old_locus_tag=SFV_2754 NC_008258.1 Protein Homology CDS 2821607 2822368 . + 0 ID=cds2983;Parent=gene3047;Dbxref=Genbank:WP_024260194.1;Name=WP_024260194.1;Note=broad specificity 5'(3')-nucleotidase and polyphosphatase;gbkey=CDS;gene=surE;product=5'/3'-nucleotidase SurE;protein_id=WP_024260194.1;transl_table=11 NC_008258.1 RefSeq gene 2822362 2822988 . + . ID=gene3048;Name=pcm;gbkey=Gene;gene=pcm;gene_biotype=protein_coding;locus_tag=SFV_RS15330;old_locus_tag=SFV_2755 NC_008258.1 Protein Homology CDS 2822362 2822988 . + 0 ID=cds2984;Parent=gene3048;Dbxref=Genbank:WP_000254708.1;Name=WP_000254708.1;Note=catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins;gbkey=CDS;gene=pcm;product=protein-L-isoaspartate O-methyltransferase;protein_id=WP_000254708.1;transl_table=11 NC_008258.1 RefSeq gene 2823128 2824267 . + . ID=gene3049;Name=nlpD;gbkey=Gene;gene=nlpD;gene_biotype=protein_coding;locus_tag=SFV_RS15335;old_locus_tag=SFV_2756 NC_008258.1 Protein Homology CDS 2823128 2824267 . + 0 ID=cds2985;Parent=gene3049;Dbxref=Genbank:WP_001272592.1;Name=WP_001272592.1;Note=outer membrane lipoprotein involved in stationary-phase cell survival%3B similar to LppB virulence determinant from Haemophilus somnus;gbkey=CDS;gene=nlpD;product=murein hydrolase activator NlpD;protein_id=WP_001272592.1;transl_table=11 NC_008258.1 RefSeq gene 2824330 2825322 . + . ID=gene3050;Name=SFV_RS15340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15340;old_locus_tag=SFV_2757 NC_008258.1 Protein Homology CDS 2824330 2825322 . + 0 ID=cds2986;Parent=gene3050;Dbxref=Genbank:WP_000081550.1;Name=WP_000081550.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this sigma factor controls a regulon of genes required for protection against external stresses;gbkey=CDS;product=RNA polymerase sigma factor RpoS;protein_id=WP_000081550.1;transl_table=11 NC_008258.1 RefSeq gene 2825442 2825849 . - . ID=gene3051;Name=SFV_RS15345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15345;old_locus_tag=SFV_2758 NC_008258.1 Protein Homology CDS 2825442 2825849 . - 0 ID=cds2987;Parent=gene3051;Dbxref=Genbank:WP_001208075.1;Name=WP_001208075.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001208075.1;transl_table=11 NC_008258.1 RefSeq gene 2825996 2826589 . + . ID=gene3052;Name=SFV_RS15350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15350;old_locus_tag=SFV_2759 NC_008258.1 Protein Homology CDS 2825996 2826589 . + 0 ID=cds2988;Parent=gene3052;Dbxref=Genbank:WP_000767727.1;Name=WP_000767727.1;gbkey=CDS;product=aromatic acid decarboxylase;protein_id=WP_000767727.1;transl_table=11 NC_008258.1 RefSeq gene 2826589 2827536 . + . ID=gene3053;Name=SFV_RS15355;end_range=2827536,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15355;old_locus_tag=SFV_2760;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 2826589 2827536 . + 0 ID=cds2989;Parent=gene3053;end_range=2827536,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=phenolic acid decarboxylase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2827809 2828372 . - . ID=gene3054;Name=SFV_RS15360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15360;old_locus_tag=SFV_2761 NC_008258.1 Protein Homology CDS 2827809 2828372 . - 0 ID=cds2990;Parent=gene3054;Dbxref=Genbank:WP_001224023.1;Name=WP_001224023.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001224023.1;transl_table=11 NC_008258.1 RefSeq gene 2828537 2828788 . + . ID=gene3055;Name=SFV_RS15365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15365 NC_008258.1 Protein Homology CDS 2828537 2828788 . + 0 ID=cds2991;Parent=gene3055;Dbxref=Genbank:WP_001249841.1;Name=WP_001249841.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_001249841.1;transl_table=11 NC_008258.1 RefSeq gene 2828790 2830811 . + . ID=gene3056;Name=SFV_RS15370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15370;old_locus_tag=SFV_2762 NC_008258.1 Protein Homology CDS 2828790 2830811 . + 0 ID=cds2992;Parent=gene3056;Dbxref=Genbank:WP_001192436.1;Name=WP_001192436.1;gbkey=CDS;product=transposase;protein_id=WP_001192436.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2830905 2832949 . + . ID=id475;gbkey=repeat_region NC_008258.1 RefSeq region 2830908 2831856 . - . ID=id476;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2830951 2831664 . - . ID=gene3057;Name=SFV_RS15375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15375;old_locus_tag=SFV_2763 NC_008258.1 Protein Homology CDS 2830951 2831664 . - 0 ID=cds2993;Parent=gene3057;Dbxref=Genbank:WP_000940416.1;Name=WP_000940416.1;gbkey=CDS;product=transposase;protein_id=WP_000940416.1;transl_table=11 NC_008258.1 RefSeq region 2831857 2832624 . + . ID=id477;gbkey=mobile_element NC_008258.1 RefSeq gene 2832106 2832609 . + . ID=gene3058;Name=SFV_RS15380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15380;old_locus_tag=SFV_2765 NC_008258.1 Protein Homology CDS 2832106 2832609 . + 0 ID=cds2994;Parent=gene3058;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 2832603 2832884 . - . ID=gene3059;Name=SFV_RS15385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15385;old_locus_tag=SFV_2766 NC_008258.1 Protein Homology CDS 2832603 2832884 . - 0 ID=cds2995;Parent=gene3059;Dbxref=Genbank:WP_000088330.1;Name=WP_000088330.1;gbkey=CDS;product=transposase;protein_id=WP_000088330.1;transl_table=11 NC_008258.1 RefSeq region 2832625 2832948 . - . ID=id478;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 2832936 2833169 . - . ID=gene3060;Name=SFV_RS15390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15390 NC_008258.1 Protein Homology CDS 2832936 2833169 . - 0 ID=cds2996;Parent=gene3060;Dbxref=Genbank:WP_000590378.1;Name=WP_000590378.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000590378.1;transl_table=11 NC_008258.1 RefSeq gene 2833166 2834074 . - . ID=gene3061;Name=SFV_RS15395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15395;old_locus_tag=SFV_2767 NC_008258.1 Protein Homology CDS 2833166 2834074 . - 0 ID=cds2997;Parent=gene3061;Dbxref=Genbank:WP_000847961.1;Name=WP_000847961.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000847961.1;transl_table=11 NC_008258.1 RefSeq gene 2834270 2835037 . + . ID=gene3062;Name=SFV_RS15400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15400;old_locus_tag=SFV_2768 NC_008258.1 Protein Homology CDS 2834270 2835037 . + 0 ID=cds2998;Parent=gene3062;Dbxref=Genbank:WP_024260301.1;Name=WP_024260301.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_024260301.1;transl_table=11 NC_008258.1 RefSeq gene 2835088 2835740 . - . ID=gene3063;Name=SFV_RS15405;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15405;pseudo=true NC_008258.1 Protein Homology CDS 2835088 2835740 . - 0 ID=cds2999;Parent=gene3063;exception=annotated by transcript or proteomic data;gbkey=CDS;product=serine/threonine protein phosphatase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2835846 2838407 . - . ID=gene3064;Name=SFV_RS15410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15410;old_locus_tag=SFV_2770 NC_008258.1 Protein Homology CDS 2835846 2838407 . - 0 ID=cds3000;Parent=gene3064;Dbxref=Genbank:WP_001272883.1;Name=WP_001272883.1;Note=This protein performs the mismatch recognition step during the DNA repair process;gbkey=CDS;product=DNA mismatch repair protein MutS;protein_id=WP_001272883.1;transl_table=11 NC_008258.1 RefSeq gene 2838483 2838662 . + . ID=gene3065;Name=SFV_RS15415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15415 NC_008258.1 Protein Homology CDS 2838483 2838662 . + 0 ID=cds3001;Parent=gene3065;Dbxref=Genbank:WP_000611929.1;Name=WP_000611929.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000611929.1;transl_table=11 NC_008258.1 RefSeq gene 2838694 2839047 . + . ID=gene3066;Name=SFV_RS15420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15420;old_locus_tag=SFV_2771 NC_008258.1 Protein Homology CDS 2838694 2839047 . + 0 ID=cds3002;Parent=gene3066;Dbxref=Genbank:WP_000015498.1;Name=WP_000015498.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000015498.1;transl_table=11 NC_008258.1 RefSeq gene 2839084 2841162 . - . ID=gene3067;Name=SFV_RS15425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15425;old_locus_tag=SFV_2772 NC_008258.1 Protein Homology CDS 2839084 2841162 . - 0 ID=cds3003;Parent=gene3067;Dbxref=Genbank:WP_005063890.1;Name=WP_005063890.1;Note=regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005063890.1;transl_table=11 NC_008258.1 RefSeq gene 2841236 2842246 . - . ID=gene3068;Name=SFV_RS15430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15430;old_locus_tag=SFV_2773 NC_008258.1 Protein Homology CDS 2841236 2842246 . - 0 ID=cds3004;Parent=gene3068;Dbxref=Genbank:WP_001059905.1;Name=WP_001059905.1;Note=hydrogenase isoenzymes formation protein%3B involved in the formation of the cyanate group of the large subunit of the hydrogenase%3B catalyzes the formation of thiocyanate from thiocarbamate;gbkey=CDS;product=carbamoyl dehydratase;protein_id=WP_001059905.1;transl_table=11 NC_008258.1 RefSeq gene 2842243 2843364 . - . ID=gene3069;Name=SFV_RS15435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15435;old_locus_tag=SFV_2774 NC_008258.1 Protein Homology CDS 2842243 2843364 . - 0 ID=cds3005;Parent=gene3069;Dbxref=Genbank:WP_001212982.1;Name=WP_001212982.1;Note=necessary for the synthesis of all three hydrogenase isoenzymes;gbkey=CDS;product=hydrogenase formation protein HypD;protein_id=WP_001212982.1;transl_table=11 NC_008258.1 RefSeq gene 2843364 2843636 . - . ID=gene3070;Name=SFV_RS15440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15440;old_locus_tag=SFV_2775 NC_008258.1 Protein Homology CDS 2843364 2843636 . - 0 ID=cds3006;Parent=gene3070;Dbxref=Genbank:WP_000334877.1;Name=WP_000334877.1;Note=HypC%3B accessory protein necessary for maturation of the hydrogenase isoforms 1%2C 2 and 3%3B forms a complex with HypD%2C HypE%2C and HypF proteins%2C which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase;gbkey=CDS;product=hydrogenase assembly chaperone;protein_id=WP_000334877.1;transl_table=11 NC_008258.1 RefSeq gene 2843627 2844499 . - . ID=gene3071;Name=SFV_RS15445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15445;old_locus_tag=SFV_2776 NC_008258.1 Protein Homology CDS 2843627 2844499 . - 0 ID=cds3007;Parent=gene3071;Dbxref=Genbank:WP_000337685.1;Name=WP_000337685.1;Note=GTP hydrolase involved in nickel liganding into hydrogenases;gbkey=CDS;product=hydrogenase nickel incorporation protein HypB;protein_id=WP_000337685.1;transl_table=11 NC_008258.1 RefSeq gene 2844503 2844853 . - . ID=gene3072;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=SFV_RS15450;old_locus_tag=SFV_2777 NC_008258.1 Protein Homology CDS 2844503 2844853 . - 0 ID=cds3008;Parent=gene3072;Dbxref=Genbank:WP_001688794.1;Name=WP_001688794.1;Note=plays a role in hydrogenase nickel cofactor insertion;gbkey=CDS;gene=hypA;product=hydrogenase nickel incorporation protein;protein_id=WP_001688794.1;transl_table=11 NC_008258.1 RefSeq gene 2845065 2845526 . + . ID=gene3073;Name=SFV_RS15455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15455;old_locus_tag=SFV_2778 NC_008258.1 Protein Homology CDS 2845065 2845526 . + 0 ID=cds3009;Parent=gene3073;Dbxref=Genbank:WP_000158056.1;Name=WP_000158056.1;Note=regulates several genes involved in the formate hydrogenlyase system%3B seems to prevent binding of FhlA transcriptional activator to the activator sequence of hyc operon;gbkey=CDS;product=formate hydrogenlyase regulatory protein HycA;protein_id=WP_000158056.1;transl_table=11 NC_008258.1 RefSeq gene 2845442 2845750 . - . ID=gene3074;Name=SFV_RS15460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15460 NC_008258.1 Protein Homology CDS 2845442 2845750 . - 0 ID=cds3010;Parent=gene3074;Dbxref=Genbank:WP_032155822.1;Name=WP_032155822.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155822.1;transl_table=11 NC_008258.1 RefSeq gene 2845651 2846262 . + . ID=gene3075;Name=SFV_RS15465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15465;old_locus_tag=SFV_2779 NC_008258.1 Protein Homology CDS 2845651 2846262 . + 0 ID=cds3011;Parent=gene3075;Dbxref=Genbank:WP_001079186.1;Name=WP_001079186.1;gbkey=CDS;product=formate hydrogenlyase subunit 2;protein_id=WP_001079186.1;transl_table=11 NC_008258.1 RefSeq gene 2846299 2847969 . + . ID=gene3076;Name=SFV_RS15470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15470;old_locus_tag=SFV_2780 NC_008258.1 Protein Homology CDS 2846299 2847969 . + 0 ID=cds3012;Parent=gene3076;Dbxref=Genbank:WP_024260302.1;Name=WP_024260302.1;Note=catalyzes the oxidation of formate to carbon dioxide and molecular hydrogen%3B formate hydrogenlyase comprises of a formate dehydrogenase%2C unidentified electron carriers and a hydrogenase (subunit 3);gbkey=CDS;product=formate hydrogenlyase subunit 3;protein_id=WP_024260302.1;transl_table=11 NC_008258.1 RefSeq gene 2847972 2848895 . + . ID=gene3077;Name=hycD;gbkey=Gene;gene=hycD;gene_biotype=protein_coding;locus_tag=SFV_RS15475;old_locus_tag=SFV_2781 NC_008258.1 Protein Homology CDS 2847972 2848895 . + 0 ID=cds3013;Parent=gene3077;Dbxref=Genbank:WP_000115208.1;Name=WP_000115208.1;Note=formate hydrogenlyase subunit 4%3B HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hycD;product=hydrogenase 3 membrane subunit;protein_id=WP_000115208.1;transl_table=11 NC_008258.1 RefSeq gene 2848913 2850622 . + . ID=gene3078;Name=hycE;gbkey=Gene;gene=hycE;gene_biotype=protein_coding;locus_tag=SFV_RS15480;old_locus_tag=SFV_2782 NC_008258.1 Protein Homology CDS 2848913 2850622 . + 0 ID=cds3014;Parent=gene3078;Dbxref=Genbank:WP_005063855.1;Name=WP_005063855.1;Note=formate hydrogenlyase subunit 5%3B HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide;gbkey=CDS;gene=hycE;product=hydrogenase 3 large subunit;protein_id=WP_005063855.1;transl_table=11 NC_008258.1 RefSeq gene 2850632 2851174 . + . ID=gene3079;Name=SFV_RS15485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15485;old_locus_tag=SFV_2783 NC_008258.1 Protein Homology CDS 2850632 2851174 . + 0 ID=cds3015;Parent=gene3079;Dbxref=Genbank:WP_000493785.1;Name=WP_000493785.1;Note=electron transfer protein for hydrogenase-3%3B the formate hydrogenlyase complex comprises of a formate dehydrogenase%2C unidentified electron carriers and hydrogenase-3%3B in this non-energy conserving pathway%2C molecular hydrogen and carbodioxide are released from formate;gbkey=CDS;product=formate hydrogenlyase complex iron-sulfur subunit;protein_id=WP_000493785.1;transl_table=11 NC_008258.1 RefSeq gene 2851174 2851941 . + . ID=gene3080;Name=SFV_RS15490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15490;old_locus_tag=SFV_2784 NC_008258.1 Protein Homology CDS 2851174 2851941 . + 0 ID=cds3016;Parent=gene3080;Dbxref=Genbank:WP_000067379.1;Name=WP_000067379.1;gbkey=CDS;product=formate hydrogenlyase subunit 7;protein_id=WP_000067379.1;transl_table=11 NC_008258.1 RefSeq gene 2851938 2852348 . + . ID=gene3081;Name=SFV_RS15495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15495;old_locus_tag=SFV_2785 NC_008258.1 Protein Homology CDS 2851938 2852348 . + 0 ID=cds3017;Parent=gene3081;Dbxref=Genbank:WP_001291916.1;Name=WP_001291916.1;Note=required for the maturation of the formate hydrogenlyase complex;gbkey=CDS;product=formate hydrogenlyase maturation protein HycH;protein_id=WP_001291916.1;transl_table=11 NC_008258.1 RefSeq gene 2852341 2852811 . + . ID=gene3082;Name=hycI;gbkey=Gene;gene=hycI;gene_biotype=protein_coding;locus_tag=SFV_RS15500;old_locus_tag=SFV_2786 NC_008258.1 Protein Homology CDS 2852341 2852811 . + 0 ID=cds3018;Parent=gene3082;Dbxref=Genbank:WP_000132961.1;Name=WP_000132961.1;Note=involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE;gbkey=CDS;gene=hycI;product=hydrogenase 3 maturation protease;protein_id=WP_000132961.1;transl_table=11 NC_008258.1 RefSeq gene 2852854 2853597 . + . ID=gene3083;Name=SFV_RS15505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15505;old_locus_tag=SFV_2787 NC_008258.1 Protein Homology CDS 2852854 2853597 . + 0 ID=cds3019;Parent=gene3083;Dbxref=Genbank:WP_044024082.1;Name=WP_044024082.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024082.1;transl_table=11 NC_008258.1 RefSeq gene 2853770 2854080 . + . ID=gene3084;Name=SFV_RS15510;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15510;pseudo=true NC_008258.1 Protein Homology CDS 2853770 2854080 . + 0 ID=cds3020;Parent=gene3084;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cytoplasmic protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2854077 2854496 . + . ID=gene3085;Name=SFV_RS15515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15515;old_locus_tag=SFV_2788 NC_008258.1 Protein Homology CDS 2854077 2854496 . + 0 ID=cds3021;Parent=gene3085;Dbxref=Genbank:WP_000126296.1;Name=WP_000126296.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_000126296.1;transl_table=11 NC_008258.1 RefSeq gene 2854611 2856035 . - . ID=gene3086;Name=SFV_RS15520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15520;old_locus_tag=SFV_2789 NC_008258.1 Protein Homology CDS 2854611 2856035 . - 0 ID=cds3022;Parent=gene3086;Dbxref=Genbank:WP_005105741.1;Name=WP_005105741.1;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=WP_005105741.1;transl_table=11 NC_008258.1 RefSeq gene 2856044 2857501 . - . ID=gene3087;Name=SFV_RS15525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15525;old_locus_tag=SFV_2790 NC_008258.1 Protein Homology CDS 2856044 2857501 . - 0 ID=cds3023;Parent=gene3087;Dbxref=Genbank:WP_001107869.1;Name=WP_001107869.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS cellobiose transporter subunit IIBC;protein_id=WP_001107869.1;transl_table=11 NC_008258.1 RefSeq gene 2857761 2858771 . + . ID=gene3088;Name=SFV_RS15530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15530;old_locus_tag=SFV_2791 NC_008258.1 Protein Homology CDS 2857761 2858771 . + 0 ID=cds3024;Parent=gene3088;Dbxref=Genbank:WP_005051459.1;Name=WP_005051459.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005051459.1;transl_table=11 NC_008258.1 RefSeq gene 2858920 2859447 . + . ID=gene3089;Name=SFV_RS15535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15535;old_locus_tag=SFV_2792 NC_008258.1 Protein Homology CDS 2858920 2859447 . + 0 ID=cds3025;Parent=gene3089;Dbxref=Genbank:WP_001078777.1;Name=WP_001078777.1;Note=involved in electron transport from formate to hydrogen;gbkey=CDS;product=electron transporter HydN;protein_id=WP_001078777.1;transl_table=11 NC_008258.1 RefSeq gene 2859600 2861852 . + . ID=gene3090;Name=SFV_RS15540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15540;old_locus_tag=SFV_2793 NC_008258.1 Protein Homology CDS 2859600 2861852 . + 0 ID=cds3026;Parent=gene3090;Dbxref=Genbank:WP_001107668.1;Name=WP_001107668.1;Note=carbamoyltransferase%3B involved in the formation of the cyanate group of hydrogenase%3B catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE;gbkey=CDS;product=carbamoyl phosphate phosphatase;protein_id=WP_001107668.1;transl_table=11 NC_008258.1 RefSeq gene 2861980 2863113 . - . ID=gene3091;Name=SFV_RS15545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15545;old_locus_tag=SFV_2794 NC_008258.1 Protein Homology CDS 2861980 2863113 . - 0 ID=cds3027;Parent=gene3091;Dbxref=Genbank:WP_000064736.1;Name=WP_000064736.1;gbkey=CDS;product=nitric oxide reductase FlRd-NAD+ reductase;protein_id=WP_000064736.1;transl_table=11 NC_008258.1 RefSeq gene 2863110 2864549 . - . ID=gene3092;Name=SFV_RS15550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15550;old_locus_tag=SFV_2795 NC_008258.1 Protein Homology CDS 2863110 2864549 . - 0 ID=cds3028;Parent=gene3092;Dbxref=Genbank:WP_000029605.1;Name=WP_000029605.1;Note=detoxifies nitric oxide using NADH;gbkey=CDS;product=anaerobic nitric oxide reductase flavorubredoxin;protein_id=WP_000029605.1;transl_table=11 NC_008258.1 RefSeq gene 2864736 2866250 . + . ID=gene3093;Name=SFV_RS15555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15555;old_locus_tag=SFV_2796 NC_008258.1 Protein Homology CDS 2864736 2866250 . + 0 ID=cds3029;Parent=gene3093;Dbxref=Genbank:WP_000010783.1;Name=WP_000010783.1;Note=Required for the expression of anaerobic nitric oxide (NO) reductase%3B acts as a transcriptional activator for the norVW operon;gbkey=CDS;product=NorR family transcriptional regulator;protein_id=WP_000010783.1;transl_table=11 NC_008258.1 RefSeq gene 2866247 2867212 . - . ID=gene3094;Name=SFV_RS15560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15560;old_locus_tag=SFV_2797 NC_008258.1 Protein Homology CDS 2866247 2867212 . - 0 ID=cds3030;Parent=gene3094;Dbxref=Genbank:WP_001287417.1;Name=WP_001287417.1;gbkey=CDS;product=arabinose 5-phosphate isomerase GutQ;protein_id=WP_001287417.1;transl_table=11 NC_008258.1 RefSeq gene 2867205 2867978 . - . ID=gene3095;Name=srlR;gbkey=Gene;gene=srlR;gene_biotype=protein_coding;gene_synonym=gutR;locus_tag=SFV_RS15565;old_locus_tag=SFV_2798 NC_008258.1 Protein Homology CDS 2867205 2867978 . - 0 ID=cds3031;Parent=gene3095;Dbxref=Genbank:WP_000804550.1;Name=WP_000804550.1;Note=regulates genes involved in glucitol utilization;gbkey=CDS;gene=srlR;product=glucitol operon repressor;protein_id=WP_000804550.1;transl_table=11 NC_008258.1 RefSeq gene 2868045 2868404 . - . ID=gene3096;Name=SFV_RS15570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15570;old_locus_tag=SFV_2799 NC_008258.1 Protein Homology CDS 2868045 2868404 . - 0 ID=cds3032;Parent=gene3096;Dbxref=Genbank:WP_000252904.1;Name=WP_000252904.1;Note=regulator for glucitol utilization;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000252904.1;transl_table=11 NC_008258.1 RefSeq gene 2868509 2869288 . - . ID=gene3097;Name=SFV_RS15575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15575;old_locus_tag=SFV_2800 NC_008258.1 Protein Homology CDS 2868509 2869288 . - 0 ID=cds3033;Parent=gene3097;Dbxref=Genbank:WP_001077344.1;Name=WP_001077344.1;Note=catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate;gbkey=CDS;product=sorbitol-6-phosphate dehydrogenase;protein_id=WP_001077344.1;transl_table=11 NC_008258.1 RefSeq gene 2869292 2869663 . - . ID=gene3098;Name=SFV_RS15580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15580;old_locus_tag=SFV_2801 NC_008258.1 Protein Homology CDS 2869292 2869663 . - 0 ID=cds3034;Parent=gene3098;Dbxref=Genbank:WP_000216201.1;Name=WP_000216201.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=glucitol/sorbitol-specific phosphotransferase enzyme IIA component;protein_id=WP_000216201.1;transl_table=11 NC_008258.1 RefSeq gene 2869674 2870632 . - . ID=gene3099;Name=srlE;gbkey=Gene;gene=srlE;gene_biotype=pseudogene;locus_tag=SFV_RS15585;pseudo=true NC_008258.1 Protein Homology CDS 2869674 2870632 . - 0 ID=cds3035;Parent=gene3099;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIB transfers the phosphoryl group to the substrate;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=srlE;product=PTS glucitol/sorbitol transporter subunit IIB;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2870629 2871192 . - . ID=gene3100;Name=srlA;gbkey=Gene;gene=srlA;gene_biotype=protein_coding;locus_tag=SFV_RS15590;old_locus_tag=SFV_2803 NC_008258.1 Protein Homology CDS 2870629 2871192 . - 0 ID=cds3036;Parent=gene3100;Dbxref=Genbank:WP_000573338.1;Name=WP_000573338.1;Note=catalyzes the phosphorylation of incoming sugar substrates along with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site;gbkey=CDS;gene=srlA;product=PTS sorbitol transporter subunit IIC;protein_id=WP_000573338.1;transl_table=11 NC_008258.1 RefSeq gene 2871448 2872533 . + . ID=gene3101;Name=SFV_RS15595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15595;old_locus_tag=SFV_2804 NC_008258.1 Protein Homology CDS 2871448 2872533 . + 0 ID=cds3037;Parent=gene3101;Dbxref=Genbank:WP_005051417.1;Name=WP_005051417.1;Note=membrane-bound lytic murein transglycosylase B%3B catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan;gbkey=CDS;product=murein hydrolase B;protein_id=WP_005051417.1;transl_table=11 NC_008258.1 RefSeq gene 2872678 2873175 . + . ID=gene3102;Name=SFV_RS15600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15600;old_locus_tag=SFV_2805 NC_008258.1 Protein Homology CDS 2872678 2873175 . + 0 ID=cds3038;Parent=gene3102;Dbxref=Genbank:WP_005105750.1;Name=WP_005105750.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105750.1;transl_table=11 NC_008258.1 RefSeq gene 2873255 2874316 . + . ID=gene3103;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=SFV_RS15605;old_locus_tag=SFV_2806 NC_008258.1 Protein Homology CDS 2873255 2874316 . + 0 ID=cds3039;Parent=gene3103;Dbxref=Genbank:WP_000963143.1;Name=WP_000963143.1;Note=catalyzes the hydrolysis of ATP in the presence of single-stranded DNA%2C the ATP-dependent uptake of single-stranded DNA by duplex DNA%2C and the ATP-dependent hybridization of homologous single-stranded DNAs;gbkey=CDS;gene=recA;product=protein RecA;protein_id=WP_000963143.1;transl_table=11 NC_008258.1 RefSeq gene 2874559 2875059 . + . ID=gene3104;Name=recX;gbkey=Gene;gene=recX;gene_biotype=protein_coding;locus_tag=SFV_RS15610;old_locus_tag=SFV_2807 NC_008258.1 Protein Homology CDS 2874559 2875059 . + 0 ID=cds3040;Parent=gene3104;Dbxref=Genbank:WP_000140506.1;Name=WP_000140506.1;Note=binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities;gbkey=CDS;gene=recX;product=regulatory protein RecX;protein_id=WP_000140506.1;transl_table=11 NC_008258.1 RefSeq gene 2875100 2875237 . - . ID=gene3105;Name=SFV_RS15615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15615 NC_008258.1 Protein Homology CDS 2875100 2875237 . - 0 ID=cds3041;Parent=gene3105;Dbxref=Genbank:WP_001297217.1;Name=WP_001297217.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297217.1;transl_table=11 NC_008258.1 RefSeq gene 2875187 2877817 . + . ID=gene3106;Name=SFV_RS15620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15620;old_locus_tag=SFV_2808 NC_008258.1 Protein Homology CDS 2875187 2877817 . + 0 ID=cds3042;Parent=gene3106;Dbxref=Genbank:WP_000047164.1;Name=WP_000047164.1;gbkey=CDS;product=alanine--tRNA ligase;protein_id=WP_000047164.1;transl_table=11 NC_008258.1 RefSeq gene 2878052 2878237 . + . ID=gene3107;Name=SFV_RS15625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15625;old_locus_tag=SFV_2809 NC_008258.1 Protein Homology CDS 2878052 2878237 . + 0 ID=cds3043;Parent=gene3107;Dbxref=Genbank:WP_000906486.1;Name=WP_000906486.1;Note=affects carbohydrate metabolism%3B has regulatory role in many processes;gbkey=CDS;product=pleiotropic regulatory protein for carbon source metabolism;protein_id=WP_000906486.1;transl_table=11 NC_008258.1 RefSeq gene 2878553 2878645 . + . ID=gene3108;Name=SFV_RS15630;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15630;old_locus_tag=SFV_2810 NC_008258.1 tRNAscan-SE tRNA 2878553 2878645 . + . ID=rna64;Parent=gene3108;anticodon=(pos:2878587..2878589);gbkey=tRNA;product=tRNA-Ser NC_008258.1 tRNAscan-SE exon 2878553 2878645 . + . ID=id479;Parent=rna64;anticodon=(pos:2878587..2878589);gbkey=tRNA;product=tRNA-Ser NC_008258.1 RefSeq repeat_region 2878648 2879008 . + . ID=id480;gbkey=repeat_region NC_008258.1 RefSeq gene 2878649 2878725 . + . ID=gene3109;Name=SFV_RS15635;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15635;old_locus_tag=SFV_2811 NC_008258.1 tRNAscan-SE tRNA 2878649 2878725 . + . ID=rna65;Parent=gene3109;anticodon=(pos:2878683..2878685);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 2878649 2878725 . + . ID=id481;Parent=rna65;anticodon=(pos:2878683..2878685);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 2878790 2878866 . + . ID=gene3110;Name=SFV_RS15640;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15640;old_locus_tag=SFV_2812 NC_008258.1 tRNAscan-SE tRNA 2878790 2878866 . + . ID=rna66;Parent=gene3110;anticodon=(pos:2878824..2878826);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 2878790 2878866 . + . ID=id482;Parent=rna66;anticodon=(pos:2878824..2878826);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 2878931 2879007 . + . ID=gene3111;Name=SFV_RS15645;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15645;old_locus_tag=SFV_2813 NC_008258.1 tRNAscan-SE tRNA 2878931 2879007 . + . ID=rna67;Parent=gene3111;anticodon=(pos:2878965..2878967);gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 2878931 2879007 . + . ID=id483;Parent=rna67;anticodon=(pos:2878965..2878967);gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 2879155 2879721 . + . ID=gene3112;Name=SFV_RS15650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15650;old_locus_tag=SFV_2814 NC_008258.1 Protein Homology CDS 2879155 2879721 . + 0 ID=cds3044;Parent=gene3112;Dbxref=Genbank:WP_000273287.1;Name=WP_000273287.1;Note=YqaB%3B catalyzes the dephosphorylation of fructose 1-phosphate%2C 6-phosphogluconate and p-nitrophenyl phosphate (pNPP)%3B presents beta-phosphoglucomutase activity at a lower extent;gbkey=CDS;product=fructose-1-P/6-phosphogluconate phosphatase;protein_id=WP_000273287.1;transl_table=11 NC_008258.1 RefSeq gene 2879718 2880146 . + . ID=gene3113;Name=SFV_RS15655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15655;old_locus_tag=SFV_2815 NC_008258.1 Protein Homology CDS 2879718 2880146 . + 0 ID=cds3045;Parent=gene3113;Dbxref=Genbank:WP_001287454.1;Name=WP_001287454.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001287454.1;transl_table=11 NC_008258.1 RefSeq gene 2880219 2881775 . + . ID=gene3114;Name=SFV_RS15660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15660;old_locus_tag=SFV_2816 NC_008258.1 Protein Homology CDS 2880219 2881775 . + 0 ID=cds3046;Parent=gene3114;Dbxref=Genbank:WP_000611802.1;Name=WP_000611802.1;Note=involved in the first step of glutathione biosynthesis;gbkey=CDS;product=glutamate--cysteine ligase;protein_id=WP_000611802.1;transl_table=11 NC_008258.1 RefSeq gene 2881925 2882440 . + . ID=gene3115;Name=SFV_RS15665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15665;old_locus_tag=SFV_2817 NC_008258.1 Protein Homology CDS 2881925 2882440 . + 0 ID=cds3047;Parent=gene3115;Dbxref=Genbank:WP_001130216.1;Name=WP_001130216.1;Note=catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2;gbkey=CDS;product=S-ribosylhomocysteine lyase;protein_id=WP_001130216.1;transl_table=11 NC_008258.1 RefSeq gene 2882504 2884042 . - . ID=gene3116;Name=emrB;gbkey=Gene;gene=emrB;gene_biotype=protein_coding;locus_tag=SFV_RS15670;old_locus_tag=SFV_2818 NC_008258.1 Protein Homology CDS 2882504 2884042 . - 0 ID=cds3048;Parent=gene3116;Dbxref=Genbank:WP_001187312.1;Name=WP_001187312.1;Note=multidrug MFS transporte%3B with EmrA is involved in resistance to hydrophobic antibiotics such as nalidixic acid;gbkey=CDS;gene=emrB;product=multidrug effux MFS transporter subunit EmrB;protein_id=WP_001187312.1;transl_table=11 NC_008258.1 RefSeq gene 2884059 2885231 . - . ID=gene3117;Name=SFV_RS15675;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15675;pseudo=true NC_008258.1 Protein Homology CDS 2884059 2885231 . - 0 ID=cds3049;Parent=gene3117;Note=with ErmA and TolC forms a multidrug efflux system;gbkey=CDS;product=multidrug transporter;pseudo=true;transl_except=(pos:complement(2884602..2884604)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2885358 2885888 . - . ID=gene3118;Name=SFV_RS15680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15680;old_locus_tag=SFV_2820 NC_008258.1 Protein Homology CDS 2885358 2885888 . - 0 ID=cds3050;Parent=gene3118;Dbxref=Genbank:WP_000378448.1;Name=WP_000378448.1;Note=DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux%3B negative regulator of the multidrug operon emrAB;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000378448.1;transl_table=11 NC_008258.1 RefSeq gene 2885979 2886314 . - . ID=gene3119;Name=SFV_RS15685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15685;old_locus_tag=SFV_2821 NC_008258.1 Protein Homology CDS 2885979 2886314 . - 0 ID=cds3051;Parent=gene3119;Dbxref=Genbank:WP_000119749.1;Name=WP_000119749.1;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_000119749.1;transl_table=11 NC_008258.1 RefSeq gene 2886304 2887041 . - . ID=gene3120;Name=SFV_RS15690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15690;old_locus_tag=SFV_2822 NC_008258.1 Protein Homology CDS 2886304 2887041 . - 0 ID=cds3052;Parent=gene3120;Dbxref=Genbank:WP_000445658.1;Name=WP_000445658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000445658.1;transl_table=11 NC_008258.1 RefSeq gene 2887165 2887398 . - . ID=gene3121;Name=SFV_RS15695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15695 NC_008258.1 Protein Homology CDS 2887165 2887398 . - 0 ID=cds3053;Parent=gene3121;Dbxref=Genbank:WP_005063875.1;Name=WP_005063875.1;gbkey=CDS;product=transporter;protein_id=WP_005063875.1;transl_table=11 NC_008258.1 RefSeq gene 2887385 2888344 . - . ID=gene3122;Name=SFV_RS15700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15700;old_locus_tag=SFV_2823 NC_008258.1 Protein Homology CDS 2887385 2888344 . - 0 ID=cds3054;Parent=gene3122;Dbxref=Genbank:WP_005051382.1;Name=WP_005051382.1;gbkey=CDS;product=MFS transporter;protein_id=WP_005051382.1;transl_table=11 NC_008258.1 RefSeq gene 2888536 2889528 . - . ID=gene3123;Name=proX;gbkey=Gene;gene=proX;gene_biotype=protein_coding;locus_tag=SFV_RS15705;old_locus_tag=SFV_2824 NC_008258.1 Protein Homology CDS 2888536 2889528 . - 0 ID=cds3055;Parent=gene3123;Dbxref=Genbank:WP_001216522.1;Name=WP_001216522.1;Note=with ProVW%2C part of the high-affinity transport system for the osmoprotectant glycine betaine;gbkey=CDS;gene=proX;product=glycine/betaine ABC transporter substrate-binding protein;protein_id=WP_001216522.1;transl_table=11 NC_008258.1 RefSeq gene 2889586 2890650 . - . ID=gene3124;Name=SFV_RS15710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15710;old_locus_tag=SFV_2825 NC_008258.1 Protein Homology CDS 2889586 2890650 . - 0 ID=cds3056;Parent=gene3124;Dbxref=Genbank:WP_000774986.1;Name=WP_000774986.1;Note=with ProVX is involved in the high-affinity uptake of glycine betaine;gbkey=CDS;product=glycine/betaine ABC transporter permease;protein_id=WP_000774986.1;transl_table=11 NC_008258.1 RefSeq gene 2890643 2891845 . - . ID=gene3125;Name=SFV_RS15715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15715;old_locus_tag=SFV_2826 NC_008258.1 Protein Homology CDS 2890643 2891845 . - 0 ID=cds3057;Parent=gene3125;Dbxref=Genbank:WP_024260303.1;Name=WP_024260303.1;Note=with ProWX is involved in the high-affinity uptake of glycine betaine;gbkey=CDS;product=glycine/betaine ABC transporter ATP-binding protein;protein_id=WP_024260303.1;transl_table=11 NC_008258.1 RefSeq gene 2892200 2893159 . - . ID=gene3126;Name=SFV_RS15720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15720;old_locus_tag=SFV_2827 NC_008258.1 Protein Homology CDS 2892200 2893159 . - 0 ID=cds3058;Parent=gene3126;Dbxref=Genbank:WP_000777973.1;Name=WP_000777973.1;Note=B2 or R2 protein%3B type 1b enzyme%3B catalyzes the rate-limiting step in dNTP synthesis%3B converts nucleotides to deoxynucleotides%3B forms a homodimer and then a multimeric complex with NrdE;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit beta;protein_id=WP_000777973.1;transl_table=11 NC_008258.1 RefSeq gene 2893169 2895313 . - . ID=gene3127;Name=SFV_RS15725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15725;old_locus_tag=SFV_2828 NC_008258.1 Protein Homology CDS 2893169 2895313 . - 0 ID=cds3059;Parent=gene3127;Dbxref=Genbank:WP_000246518.1;Name=WP_000246518.1;gbkey=CDS;product=ribonucleotide-diphosphate reductase subunit alpha;protein_id=WP_000246518.1;transl_table=11 NC_008258.1 RefSeq gene 2895286 2895696 . - . ID=gene3128;Name=nrdI;gbkey=Gene;gene=nrdI;gene_biotype=protein_coding;locus_tag=SFV_RS15730;old_locus_tag=SFV_2829 NC_008258.1 Protein Homology CDS 2895286 2895696 . - 0 ID=cds3060;Parent=gene3128;Dbxref=Genbank:WP_000080947.1;Name=WP_000080947.1;Note=in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF;gbkey=CDS;gene=nrdI;product=protein NrdI;protein_id=WP_000080947.1;transl_table=11 NC_008258.1 RefSeq gene 2895693 2895938 . - . ID=gene3129;Name=SFV_RS15735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15735;old_locus_tag=SFV_2830 NC_008258.1 Protein Homology CDS 2895693 2895938 . - 0 ID=cds3061;Parent=gene3129;Dbxref=Genbank:WP_001223227.1;Name=WP_001223227.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_001223227.1;transl_table=11 NC_008258.1 RefSeq gene 2896187 2896516 . - . ID=gene3130;Name=SFV_RS15740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15740;old_locus_tag=SFV_2831 NC_008258.1 Protein Homology CDS 2896187 2896516 . - 0 ID=cds3062;Parent=gene3130;Dbxref=Genbank:WP_001295174.1;Name=WP_001295174.1;gbkey=CDS;product=DUF883 domain-containing protein;protein_id=WP_001295174.1;transl_table=11 NC_008258.1 RefSeq gene 2896668 2897012 . + . ID=gene3131;Name=SFV_RS15745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15745;old_locus_tag=SFV_2832 NC_008258.1 Protein Homology CDS 2896668 2897012 . + 0 ID=cds3063;Parent=gene3131;Dbxref=Genbank:WP_000281320.1;Name=WP_000281320.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000281320.1;transl_table=11 NC_008258.1 RefSeq gene 2897049 2897498 . - . ID=gene3132;Name=SFV_RS15750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15750;old_locus_tag=SFV_2833 NC_008258.1 Protein Homology CDS 2897049 2897498 . - 0 ID=cds3064;Parent=gene3132;Dbxref=Genbank:WP_000492656.1;Name=WP_000492656.1;gbkey=CDS;product=L-alanine exporter AlaE;protein_id=WP_000492656.1;transl_table=11 NC_008258.1 RefSeq gene 2898168 2898572 . + . ID=gene3133;Name=SFV_RS15755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15755;old_locus_tag=SFV_2834 NC_008258.1 Protein Homology CDS 2898168 2898572 . + 0 ID=cds3065;Parent=gene3133;Dbxref=Genbank:WP_000115383.1;Name=WP_000115383.1;gbkey=CDS;product=DNA-binding protein StpA;protein_id=WP_000115383.1;transl_table=11 NC_008258.1 RefSeq gene 2898619 2899143 . - . ID=gene3134;Name=SFV_RS15760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15760;old_locus_tag=SFV_2835 NC_008258.1 Protein Homology CDS 2898619 2899143 . - 0 ID=cds3066;Parent=gene3134;Dbxref=Genbank:WP_001229467.1;Name=WP_001229467.1;gbkey=CDS;product=membrane protein;protein_id=WP_001229467.1;transl_table=11 NC_008258.1 RefSeq gene 2899153 2899452 . - . ID=gene3135;Name=SFV_RS15765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15765;old_locus_tag=SFV_2836 NC_008258.1 Protein Homology CDS 2899153 2899452 . - 0 ID=cds3067;Parent=gene3135;Dbxref=Genbank:WP_000137292.1;Name=WP_000137292.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000137292.1;transl_table=11 NC_008258.1 RefSeq gene 2899635 2899793 . + . ID=gene3136;Name=SFV_RS15770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15770;old_locus_tag=SFV_2837 NC_008258.1 Protein Homology CDS 2899635 2899793 . + 0 ID=cds3068;Parent=gene3136;Dbxref=Genbank:WP_000508176.1;Name=WP_000508176.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000508176.1;transl_table=11 NC_008258.1 RefSeq gene 2899877 2900326 . + . ID=gene3137;Name=SFV_RS15775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15775;old_locus_tag=SFV_2838 NC_008258.1 Protein Homology CDS 2899877 2900326 . + 0 ID=cds3069;Parent=gene3137;Dbxref=Genbank:WP_000522424.1;Name=WP_000522424.1;gbkey=CDS;product=peptidoglycan-binding protein LysM;protein_id=WP_000522424.1;transl_table=11 NC_008258.1 RefSeq gene 2900327 2900989 . - . ID=gene3138;Name=SFV_RS15780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15780;old_locus_tag=SFV_2839 NC_008258.1 Protein Homology CDS 2900327 2900989 . - 0 ID=cds3070;Parent=gene3138;Dbxref=Genbank:WP_000156796.1;Name=WP_000156796.1;Note=regulator of gab gene expression;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000156796.1;transl_table=11 NC_008258.1 RefSeq gene 2901010 2902410 . - . ID=gene3139;Name=SFV_RS15785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15785;old_locus_tag=SFV_2840 NC_008258.1 Protein Homology CDS 2901010 2902410 . - 0 ID=cds3071;Parent=gene3139;Dbxref=Genbank:WP_005105760.1;Name=WP_005105760.1;gbkey=CDS;product=GABA permease;protein_id=WP_005105760.1;transl_table=11 NC_008258.1 RefSeq gene 2902648 2903934 . - . ID=gene3140;Name=SFV_RS15790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15790;old_locus_tag=SFV_2841 NC_008258.1 Protein Homology CDS 2902648 2903934 . - 0 ID=cds3072;Parent=gene3140;Dbxref=Genbank:WP_024260193.1;Name=WP_024260193.1;gbkey=CDS;product=4-aminobutyrate aminotransferase;protein_id=WP_024260193.1;transl_table=11 NC_008258.1 RefSeq gene 2903942 2905390 . - . ID=gene3141;Name=gabD;gbkey=Gene;gene=gabD;gene_biotype=pseudogene;locus_tag=SFV_RS15795;pseudo=true NC_008258.1 Protein Homology CDS 2903942 2905390 . - 0 ID=cds3073;Parent=gene3141;Note=catalyzes the formation of succinate from succinate semialdehyde%3B NADP dependent;gbkey=CDS;gene=gabD;product=succinate-semialdehyde dehydrogenase;pseudo=true;transl_except=(pos:complement(2904689..2904691)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2905413 2906681 . - . ID=gene3142;Name=SFV_RS15800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15800;old_locus_tag=SFV_2843 NC_008258.1 Protein Homology CDS 2905413 2906681 . - 0 ID=cds3074;Parent=gene3142;Dbxref=Genbank:WP_000271990.1;Name=WP_000271990.1;Note=catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate;gbkey=CDS;product=hydroxyglutarate oxidase;protein_id=WP_000271990.1;transl_table=11 NC_008258.1 RefSeq gene 2906701 2907678 . - . ID=gene3143;Name=SFV_RS15805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15805;old_locus_tag=SFV_2844 NC_008258.1 Protein Homology CDS 2906701 2907678 . - 0 ID=cds3075;Parent=gene3143;Dbxref=Genbank:WP_001315804.1;Name=WP_001315804.1;Note=in Escherichia coli this gene is induced by carbon starvation and depends on sigma S and cAMP-CRP%3B the structure of the Gab protein shows it is a member of non-heme iron (II)-dependent oxygenase superfamily which includes clavamini acid synthases%3B forms homotetramers in solution;gbkey=CDS;product=protein CsiD;protein_id=WP_001315804.1;transl_table=11 NC_008258.1 RefSeq gene 2908014 2910266 . - . ID=gene3144;Name=SFV_RS15810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15810;old_locus_tag=SFV_2845 NC_008258.1 Protein Homology CDS 2908014 2910266 . - 0 ID=cds3076;Parent=gene3144;Dbxref=Genbank:WP_000491415.1;Name=WP_000491415.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000491415.1;transl_table=11 NC_008258.1 RefSeq gene 2910825 2910900 . + . ID=gene3145;Name=SFV_RS15815;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS15815;old_locus_tag=SFV_2846 NC_008258.1 tRNAscan-SE tRNA 2910825 2910900 . + . ID=rna68;Parent=gene3145;anticodon=(pos:2910858..2910860);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 2910825 2910900 . + . ID=id484;Parent=rna68;anticodon=(pos:2910858..2910860);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 2910912 2911151 . + . ID=gene3146;Name=SFV_RS15820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15820 NC_008258.1 Protein Homology CDS 2910912 2911151 . + 0 ID=cds3077;Parent=gene3146;Dbxref=Genbank:WP_000284119.1;Name=WP_000284119.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000284119.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2911118 2912378 . + . ID=id485;gbkey=repeat_region NC_008258.1 RefSeq region 2911118 2912375 . - . ID=id486;gbkey=mobile_element NC_008258.1 RefSeq gene 2911148 2912014 . - . ID=gene3147;Name=SFV_RS15825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15825;old_locus_tag=SFV_2847 NC_008258.1 Protein Homology CDS 2911148 2912014 . - 0 ID=cds3078;Parent=gene3147;Dbxref=Genbank:WP_005061866.1;Name=WP_005061866.1;gbkey=CDS;product=transposase;protein_id=WP_005061866.1;transl_table=11 NC_008258.1 RefSeq gene 2912011 2912310 . - . ID=gene3148;Name=SFV_RS15830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15830;old_locus_tag=SFV_2848 NC_008258.1 Protein Homology CDS 2912011 2912310 . - 0 ID=cds3079;Parent=gene3148;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2912405 2913184 . + . ID=id487;gbkey=repeat_region NC_008258.1 RefSeq region 2912414 2913181 . - . ID=id488;gbkey=mobile_element NC_008258.1 RefSeq gene 2912429 2912932 . - . ID=gene3149;Name=SFV_RS15835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15835;old_locus_tag=SFV_2849 NC_008258.1 Protein Homology CDS 2912429 2912932 . - 0 ID=cds3080;Parent=gene3149;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 2913326 2914549 . - . ID=gene3150;Name=SFV_RS15840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15840;old_locus_tag=SFV_2851 NC_008258.1 Protein Homology CDS 2913326 2914549 . - 0 ID=cds3081;Parent=gene3150;Dbxref=Genbank:WP_000252184.1;Name=WP_000252184.1;gbkey=CDS;product=integrase;protein_id=WP_000252184.1;transl_table=11 NC_008258.1 RefSeq gene 2915331 2915813 . - . ID=gene3151;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=SFV_RS15845;old_locus_tag=SFV_2852 NC_008258.1 Protein Homology CDS 2915331 2915813 . - 0 ID=cds3082;Parent=gene3151;Dbxref=Genbank:WP_000162574.1;Name=WP_000162574.1;Note=binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes%3B also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site%3B SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus%3B both the tmRNA and SmpB are regulated in cell cycle-dependent manner%3B functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation;gbkey=CDS;gene=smpB;product=SsrA-binding protein;protein_id=WP_000162574.1;transl_table=11 NC_008258.1 RefSeq gene 2915945 2916421 . + . ID=gene3152;Name=SFV_RS15850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15850 NC_008258.1 Protein Homology CDS 2915945 2916421 . + 0 ID=cds3083;Parent=gene3152;Dbxref=Genbank:WP_000600189.1;Name=WP_000600189.1;gbkey=CDS;product=ribosome association toxin RatA;protein_id=WP_000600189.1;transl_table=11 NC_008258.1 RefSeq gene 2916411 2916701 . + . ID=gene3153;Name=SFV_RS15855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15855 NC_008258.1 Protein Homology CDS 2916411 2916701 . + 0 ID=cds3084;Parent=gene3153;Dbxref=Genbank:WP_000900741.1;Name=WP_000900741.1;gbkey=CDS;product=protein RnfH;protein_id=WP_000900741.1;transl_table=11 NC_008258.1 RefSeq gene 2916763 2917104 . - . ID=gene3154;Name=SFV_RS15860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15860;old_locus_tag=SFV_2854 NC_008258.1 Protein Homology CDS 2916763 2917104 . - 0 ID=cds3085;Parent=gene3154;Dbxref=Genbank:WP_001203437.1;Name=WP_001203437.1;gbkey=CDS;product=outer membrane protein assembly factor BamE;protein_id=WP_001203437.1;transl_table=11 NC_008258.1 RefSeq gene 2917253 2918914 . - . ID=gene3155;Name=SFV_RS15865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15865;old_locus_tag=SFV_2855 NC_008258.1 Protein Homology CDS 2917253 2918914 . - 0 ID=cds3086;Parent=gene3155;Dbxref=Genbank:WP_000880917.1;Name=WP_000880917.1;gbkey=CDS;product=DNA repair protein RecN;protein_id=WP_000880917.1;transl_table=11 NC_008258.1 RefSeq gene 2919000 2919878 . - . ID=gene3156;Name=ppnK;gbkey=Gene;gene=ppnK;gene_biotype=protein_coding;locus_tag=SFV_RS15870;old_locus_tag=SFV_2856 NC_008258.1 Protein Homology CDS 2919000 2919878 . - 0 ID=cds3087;Parent=gene3156;Dbxref=Genbank:WP_001059169.1;Name=WP_001059169.1;Note=catalyzes the phosphorylation of NAD to NADP;gbkey=CDS;gene=ppnK;product=NAD kinase;protein_id=WP_001059169.1;transl_table=11 NC_008258.1 RefSeq gene 2920001 2920594 . + . ID=gene3157;Name=SFV_RS15875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15875;old_locus_tag=SFV_2857 NC_008258.1 Protein Homology CDS 2920001 2920594 . + 0 ID=cds3088;Parent=gene3157;Dbxref=Genbank:WP_005105765.1;Name=WP_005105765.1;Note=with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins%3B may act as a thermosensor;gbkey=CDS;product=protein GrpE;protein_id=WP_005105765.1;transl_table=11 NC_008258.1 RefSeq gene 2920649 2921890 . - . ID=gene3158;Name=SFV_RS15880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15880;old_locus_tag=SFV_2858 NC_008258.1 Protein Homology CDS 2920649 2921890 . - 0 ID=cds3089;Parent=gene3158;Dbxref=Genbank:WP_024260304.1;Name=WP_024260304.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260304.1;transl_table=11 NC_008258.1 RefSeq gene 2921956 2922747 . - . ID=gene3159;Name=SFV_RS15885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15885;old_locus_tag=SFV_2859 NC_008258.1 Protein Homology CDS 2921956 2922747 . - 0 ID=cds3090;Parent=gene3159;Dbxref=Genbank:WP_005051300.1;Name=WP_005051300.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051300.1;transl_table=11 NC_008258.1 RefSeq gene 2922914 2924275 . + . ID=gene3160;Name=SFV_RS15890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15890;old_locus_tag=SFV_2860 NC_008258.1 Protein Homology CDS 2922914 2924275 . + 0 ID=cds3091;Parent=gene3160;Dbxref=Genbank:WP_000460044.1;Name=WP_000460044.1;gbkey=CDS;product=signal recognition particle protein;protein_id=WP_000460044.1;transl_table=11 NC_008258.1 RefSeq gene 2924412 2924660 . + . ID=gene3161;Name=SFV_RS15895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15895;old_locus_tag=SFV_2861 NC_008258.1 Protein Homology CDS 2924412 2924660 . + 0 ID=cds3092;Parent=gene3161;Dbxref=Genbank:WP_000256450.1;Name=WP_000256450.1;gbkey=CDS;product=30S ribosomal protein S16;protein_id=WP_000256450.1;transl_table=11 NC_008258.1 RefSeq gene 2924679 2925227 . + . ID=gene3162;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=SFV_RS15900;old_locus_tag=SFV_2862 NC_008258.1 Protein Homology CDS 2924679 2925227 . + 0 ID=cds3093;Parent=gene3162;Dbxref=Genbank:WP_000043335.1;Name=WP_000043335.1;Note=Essential for efficient processing of 16S rRNA;gbkey=CDS;gene=rimM;product=ribosome maturation factor RimM;protein_id=WP_000043335.1;transl_table=11 NC_008258.1 RefSeq gene 2925258 2926025 . + . ID=gene3163;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=SFV_RS15905;old_locus_tag=SFV_2863 NC_008258.1 Protein Homology CDS 2925258 2926025 . + 0 ID=cds3094;Parent=gene3163;Dbxref=Genbank:WP_000264779.1;Name=WP_000264779.1;Note=methylates guanosine-37 in various tRNAs%3B uses S-adenosyl-L-methionine to transfer methyl group to tRNA;gbkey=CDS;gene=trmD;product=tRNA (guanine-N(1)-)-methyltransferase;protein_id=WP_000264779.1;transl_table=11 NC_008258.1 RefSeq gene 2926067 2926414 . + . ID=gene3164;Name=SFV_RS15910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15910;old_locus_tag=SFV_2864 NC_008258.1 Protein Homology CDS 2926067 2926414 . + 0 ID=cds3095;Parent=gene3164;Dbxref=Genbank:WP_000065253.1;Name=WP_000065253.1;gbkey=CDS;product=50S ribosomal protein L19;protein_id=WP_000065253.1;transl_table=11 NC_008258.1 RefSeq gene 2926491 2926973 . - . ID=gene3165;Name=SFV_RS15915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15915;old_locus_tag=SFV_2865 NC_008258.1 Protein Homology CDS 2926491 2926973 . - 0 ID=cds3096;Parent=gene3165;Dbxref=Genbank:WP_000589830.1;Name=WP_000589830.1;gbkey=CDS;product=membrane protein;protein_id=WP_000589830.1;transl_table=11 NC_008258.1 RefSeq gene 2926989 2928211 . - . ID=gene3166;Name=SFV_RS15920;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS15920;pseudo=true NC_008258.1 Protein Homology CDS 2926989 2928211 . - 0 ID=cds3097;Parent=gene3166;exception=annotated by transcript or proteomic data;gbkey=CDS;product=diguanylate cyclase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 2928204 2928722 . - . ID=gene3167;Name=SFV_RS15925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15925;old_locus_tag=SFV_2868 NC_008258.1 Protein Homology CDS 2928204 2928722 . - 0 ID=cds3098;Parent=gene3167;Dbxref=Genbank:WP_001212392.1;Name=WP_001212392.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001212392.1;transl_table=11 NC_008258.1 RefSeq gene 2928872 2929237 . - . ID=gene3168;Name=SFV_RS15930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15930;old_locus_tag=SFV_2869 NC_008258.1 Protein Homology CDS 2928872 2929237 . - 0 ID=cds3099;Parent=gene3168;Dbxref=Genbank:WP_005051282.1;Name=WP_005051282.1;gbkey=CDS;product=lipoprotein;protein_id=WP_005051282.1;transl_table=11 NC_008258.1 RefSeq gene 2929447 2930517 . + . ID=gene3169;Name=SFV_RS15935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15935;old_locus_tag=SFV_2870 NC_008258.1 Protein Homology CDS 2929447 2930517 . + 0 ID=cds3100;Parent=gene3169;Dbxref=Genbank:WP_000548559.1;Name=WP_000548559.1;Note=catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate%2C tyrosine sensitive;gbkey=CDS;product=phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=WP_000548559.1;transl_table=11 NC_008258.1 RefSeq gene 2930528 2931649 . + . ID=gene3170;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=SFV_RS15940;old_locus_tag=SFV_2871 NC_008258.1 Protein Homology CDS 2930528 2931649 . + 0 ID=cds3101;Parent=gene3170;Dbxref=Genbank:WP_000225221.1;Name=WP_000225221.1;Note=catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis;gbkey=CDS;gene=tyrA;product=chorismate mutase;protein_id=WP_000225221.1;transl_table=11 NC_008258.1 RefSeq gene 2931692 2932852 . - . ID=gene3171;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=SFV_RS15945;old_locus_tag=SFV_2872 NC_008258.1 Protein Homology CDS 2931692 2932852 . - 0 ID=cds3102;Parent=gene3171;Dbxref=Genbank:WP_000200120.1;Name=WP_000200120.1;Note=catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis;gbkey=CDS;gene=pheA;product=P-protein;protein_id=WP_000200120.1;transl_table=11 NC_008258.1 RefSeq gene 2933102 2933443 . - . ID=gene3172;Name=SFV_RS15950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15950;old_locus_tag=SFV_2873 NC_008258.1 Protein Homology CDS 2933102 2933443 . - 0 ID=cds3103;Parent=gene3172;Dbxref=Genbank:WP_000178456.1;Name=WP_000178456.1;Note=associated with 30S ribosomal subunit%3B interferes with translation elongation;gbkey=CDS;product=ribosome-associated inhibitor A;protein_id=WP_000178456.1;transl_table=11 NC_008258.1 RefSeq gene 2933478 2933684 . - . ID=gene3173;Name=SFV_RS15955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15955 NC_008258.1 Protein Homology CDS 2933478 2933684 . - 0 ID=cds3104;Parent=gene3173;Dbxref=Genbank:WP_001330697.1;Name=WP_001330697.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001330697.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2933687 2935133 . + . ID=id489;gbkey=repeat_region NC_008258.1 RefSeq region 2933690 2935117 . + . ID=id490;gbkey=mobile_element NC_008258.1 RefSeq gene 2933775 2935103 . + . ID=gene3174;Name=SFV_RS15960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15960;old_locus_tag=SFV_2874 NC_008258.1 Protein Homology CDS 2933775 2935103 . + 0 ID=cds3105;Parent=gene3174;Dbxref=Genbank:WP_000547026.1;Name=WP_000547026.1;gbkey=CDS;product=transposase;protein_id=WP_000547026.1;transl_table=11 NC_008258.1 RefSeq gene 2935667 2936956 . + . ID=gene3175;Name=SFV_RS15965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15965;old_locus_tag=SFV_2875 NC_008258.1 Protein Homology CDS 2935667 2936956 . + 0 ID=cds3106;Parent=gene3175;Dbxref=Genbank:WP_000450476.1;Name=WP_000450476.1;gbkey=CDS;product=serine transporter;protein_id=WP_000450476.1;transl_table=11 NC_008258.1 RefSeq gene 2937014 2938381 . + . ID=gene3176;Name=SFV_RS15970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15970;old_locus_tag=SFV_2876 NC_008258.1 Protein Homology CDS 2937014 2938381 . + 0 ID=cds3107;Parent=gene3176;Dbxref=Genbank:WP_000626404.1;Name=WP_000626404.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase;protein_id=WP_000626404.1;transl_table=11 NC_008258.1 RefSeq gene 2938492 2939247 . + . ID=gene3177;Name=SFV_RS15975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15975;old_locus_tag=SFV_2877 NC_008258.1 Protein Homology CDS 2938492 2939247 . + 0 ID=cds3108;Parent=gene3177;Dbxref=Genbank:WP_005051589.1;Name=WP_005051589.1;Note=similar to flap endonuclease%3B FEN family%3B protein from E. coli does not have exonuclease activity;gbkey=CDS;product=flap endonuclease Xni;protein_id=WP_005051589.1;transl_table=11 NC_008258.1 RefSeq gene 2939300 2940448 . - . ID=gene3178;Name=SFV_RS15980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15980;old_locus_tag=SFV_2878 NC_008258.1 Protein Homology CDS 2939300 2940448 . - 0 ID=cds3109;Parent=gene3178;Dbxref=Genbank:WP_005105773.1;Name=WP_005105773.1;gbkey=CDS;product=L-1%2C2-propanediol oxidoreductase;protein_id=WP_005105773.1;transl_table=11 NC_008258.1 RefSeq gene 2940476 2941123 . - . ID=gene3179;Name=SFV_RS15985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15985;old_locus_tag=SFV_2879 NC_008258.1 Protein Homology CDS 2940476 2941123 . - 0 ID=cds3110;Parent=gene3179;Dbxref=Genbank:WP_000440781.1;Name=WP_000440781.1;Note=catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate;gbkey=CDS;product=L-fuculose phosphate aldolase;protein_id=WP_000440781.1;transl_table=11 NC_008258.1 RefSeq gene 2941670 2942986 . + . ID=gene3180;Name=SFV_RS15990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS15990;old_locus_tag=SFV_2880 NC_008258.1 Protein Homology CDS 2941670 2942986 . + 0 ID=cds3111;Parent=gene3180;Dbxref=Genbank:WP_000528612.1;Name=WP_000528612.1;gbkey=CDS;product=L-fucose transporter;protein_id=WP_000528612.1;transl_table=11 NC_008258.1 RefSeq gene 2943019 2944794 . + . ID=gene3181;Name=fucI;gbkey=Gene;gene=fucI;gene_biotype=protein_coding;locus_tag=SFV_RS15995;old_locus_tag=SFV_2881 NC_008258.1 Protein Homology CDS 2943019 2944794 . + 0 ID=cds3112;Parent=gene3181;Dbxref=Genbank:WP_000724153.1;Name=WP_000724153.1;Note=catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose;gbkey=CDS;gene=fucI;product=L-fucose isomerase;protein_id=WP_000724153.1;transl_table=11 NC_008258.1 RefSeq gene 2944903 2946322 . + . ID=gene3182;Name=SFV_RS16005;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16005;pseudo=true NC_008258.1 Protein Homology CDS 2944903 2946322 . + 0 ID=cds3113;Parent=gene3182;exception=annotated by transcript or proteomic data;gbkey=CDS;product=L-fuculose kinase;pseudo=true;transl_except=(pos:2945720..2945722%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2946324 2946746 . + . ID=gene3183;Name=SFV_RS16010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16010;old_locus_tag=SFV_2883 NC_008258.1 Protein Homology CDS 2946324 2946746 . + 0 ID=cds3114;Parent=gene3183;Dbxref=Genbank:WP_000920840.1;Name=WP_000920840.1;gbkey=CDS;product=L-fucose mutarotase;protein_id=WP_000920840.1;transl_table=11 NC_008258.1 RefSeq gene 2946804 2947535 . + . ID=gene3184;Name=SFV_RS16015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16015;old_locus_tag=SFV_2884 NC_008258.1 Protein Homology CDS 2946804 2947535 . + 0 ID=cds3115;Parent=gene3184;Dbxref=Genbank:WP_000642344.1;Name=WP_000642344.1;Note=regulates expression of genes involved in L-fucose utilization;gbkey=CDS;product=l-fucose operon activator;protein_id=WP_000642344.1;transl_table=11 NC_008258.1 RefSeq gene 2947579 2948679 . - . ID=gene3185;Name=SFV_RS16020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16020;old_locus_tag=SFV_2885 NC_008258.1 Protein Homology CDS 2947579 2948679 . - 0 ID=cds3116;Parent=gene3185;Dbxref=Genbank:WP_001045525.1;Name=WP_001045525.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase M;protein_id=WP_001045525.1;transl_table=11 NC_008258.1 RefSeq gene 2948672 2949067 . - . ID=gene3186;Name=SFV_RS16025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16025;old_locus_tag=SFV_2886 NC_008258.1 Protein Homology CDS 2948672 2949067 . - 0 ID=cds3117;Parent=gene3186;Dbxref=Genbank:WP_000203905.1;Name=WP_000203905.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000203905.1;transl_table=11 NC_008258.1 RefSeq gene 2949086 2950003 . - . ID=gene3187;Name=SFV_RS16030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16030;old_locus_tag=SFV_2887 NC_008258.1 Protein Homology CDS 2949086 2950003 . - 0 ID=cds3118;Parent=gene3187;Dbxref=Genbank:WP_000044395.1;Name=WP_000044395.1;Note=Glycine cleavage system transcriptional activator%3B activates the gcvTHP operon in the presence of glycine and represses the operon in its absence;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000044395.1;transl_table=11 NC_008258.1 RefSeq gene 2950354 2950581 . - . ID=gene3188;Name=SFV_RS16035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16035;old_locus_tag=SFV_2888 NC_008258.1 Protein Homology CDS 2950354 2950581 . - 0 ID=cds3119;Parent=gene3188;Dbxref=Genbank:WP_005051615.1;Name=WP_005051615.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051615.1;transl_table=11 NC_008258.1 RefSeq gene 2950773 2951978 . + . ID=gene3189;Name=SFV_RS16040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16040;old_locus_tag=SFV_2889 NC_008258.1 Protein Homology CDS 2950773 2951978 . + 0 ID=cds3120;Parent=gene3189;Dbxref=Genbank:WP_005064131.1;Name=WP_005064131.1;gbkey=CDS;product=cysteine sulfinate desulfinase;protein_id=WP_005064131.1;transl_table=11 NC_008258.1 RefSeq gene 2951978 2952421 . + . ID=gene3190;Name=SFV_RS16045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16045;old_locus_tag=SFV_2890 NC_008258.1 Protein Homology CDS 2951978 2952421 . + 0 ID=cds3121;Parent=gene3190;Dbxref=Genbank:WP_000184250.1;Name=WP_000184250.1;Note=binds and activates CsdA%3B Fe-S protein;gbkey=CDS;product=hypothetical protein;protein_id=WP_000184250.1;transl_table=11 NC_008258.1 RefSeq gene 2952472 2953278 . - . ID=gene3191;Name=SFV_RS16050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16050;old_locus_tag=SFV_2891 NC_008258.1 Protein Homology CDS 2952472 2953278 . - 0 ID=cds3122;Parent=gene3191;Dbxref=Genbank:WP_000117724.1;Name=WP_000117724.1;Note=accepts sulfur from CsdA;gbkey=CDS;product=sulfur acceptor protein CsdL;protein_id=WP_000117724.1;transl_table=11 NC_008258.1 RefSeq gene 2953517 2954614 . - . ID=gene3192;Name=mltA;gbkey=Gene;gene=mltA;gene_biotype=protein_coding;locus_tag=SFV_RS16055;old_locus_tag=SFV_2892 NC_008258.1 Protein Homology CDS 2953517 2954614 . - 0 ID=cds3123;Parent=gene3192;Dbxref=Genbank:WP_000678641.1;Name=WP_000678641.1;Note=membrane-bound%2C lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues;gbkey=CDS;gene=mltA;product=murein transglycosylase;protein_id=WP_000678641.1;transl_table=11 NC_008258.1 RefSeq gene 2954823 2954899 . + . ID=gene3193;Name=SFV_RS16060;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS16060;old_locus_tag=SFV_2893 NC_008258.1 tRNAscan-SE tRNA 2954823 2954899 . + . ID=rna69;Parent=gene3193;anticodon=(pos:2954857..2954859);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 2954823 2954899 . + . ID=id491;Parent=rna69;anticodon=(pos:2954857..2954859);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 2954933 2955009 . + . ID=gene3194;Name=SFV_RS16065;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS16065;old_locus_tag=SFV_2894 NC_008258.1 tRNAscan-SE tRNA 2954933 2955009 . + . ID=rna70;Parent=gene3194;anticodon=(pos:2954967..2954969);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 2954933 2955009 . + . ID=id492;Parent=rna70;anticodon=(pos:2954967..2954969);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 2955084 2956337 . - . ID=gene3195;Name=amiC;gbkey=Gene;gene=amiC;gene_biotype=protein_coding;locus_tag=SFV_RS16070;old_locus_tag=SFV_2895 NC_008258.1 Protein Homology CDS 2955084 2956337 . - 0 ID=cds3124;Parent=gene3195;Dbxref=Genbank:WP_005051625.1;Name=WP_005051625.1;Note=hydrolyzes the bond between N-acetylmuramic acid and amino acid residues in peptidoglycan;gbkey=CDS;gene=amiC;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_005051625.1;transl_table=11 NC_008258.1 RefSeq gene 2956569 2957900 . + . ID=gene3196;Name=SFV_RS16075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16075;old_locus_tag=SFV_2896 NC_008258.1 Protein Homology CDS 2956569 2957900 . + 0 ID=cds3125;Parent=gene3196;Dbxref=Genbank:WP_000237955.1;Name=WP_000237955.1;Note=catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis;gbkey=CDS;product=amino-acid acetyltransferase;protein_id=WP_000237955.1;transl_table=11 NC_008258.1 RefSeq gene 2957962 2959788 . - . ID=gene3197;Name=recD;gbkey=Gene;gene=recD;gene_biotype=protein_coding;locus_tag=SFV_RS16080;old_locus_tag=SFV_2897 NC_008258.1 Protein Homology CDS 2957962 2959788 . - 0 ID=cds3126;Parent=gene3197;Dbxref=Genbank:WP_000775982.1;Name=WP_000775982.1;Note=helicase/nuclease%3B with RecBC catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity;gbkey=CDS;gene=recD;product=exonuclease V subunit alpha;protein_id=WP_000775982.1;transl_table=11 NC_008258.1 RefSeq gene 2959788 2963330 . - . ID=gene3198;Name=recB;gbkey=Gene;gene=recB;gene_biotype=protein_coding;locus_tag=SFV_RS16085;old_locus_tag=SFV_2898 NC_008258.1 Protein Homology CDS 2959788 2963330 . - 0 ID=cds3127;Parent=gene3198;Dbxref=Genbank:WP_001285971.1;Name=WP_001285971.1;Note=helicase/nuclease%3B with RecCD catalyzes the exonucleolytic cleavage of DNA%3B RecD has 5' to 3' helicase activity;gbkey=CDS;gene=recB;product=exonuclease V subunit beta;protein_id=WP_001285971.1;transl_table=11 NC_008258.1 RefSeq gene 2963323 2966211 . - . ID=gene3199;Name=SFV_RS16090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16090;old_locus_tag=SFV_2899 NC_008258.1 Protein Homology CDS 2963323 2966211 . - 0 ID=cds3128;Parent=gene3199;Dbxref=Genbank:WP_001138152.1;Name=WP_001138152.1;Note=degrades small peptides;gbkey=CDS;product=protease 3;protein_id=WP_001138152.1;transl_table=11 NC_008258.1 RefSeq gene 2966387 2969755 . - . ID=gene3200;Name=recC;gbkey=Gene;gene=recC;gene_biotype=protein_coding;locus_tag=SFV_RS16095;old_locus_tag=SFV_2900 NC_008258.1 Protein Homology CDS 2966387 2969755 . - 0 ID=cds3129;Parent=gene3200;Dbxref=Genbank:WP_000946915.1;Name=WP_000946915.1;Note=catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides%3B component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination;gbkey=CDS;gene=recC;product=exonuclease V subunit gamma;protein_id=WP_000946915.1;transl_table=11 NC_008258.1 RefSeq gene 2969768 2970091 . - . ID=gene3201;Name=SFV_RS16100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16100;old_locus_tag=SFV_2901 NC_008258.1 Protein Homology CDS 2969768 2970091 . - 0 ID=cds3130;Parent=gene3201;Dbxref=Genbank:WP_001276479.1;Name=WP_001276479.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001276479.1;transl_table=11 NC_008258.1 RefSeq gene 2970076 2970483 . - . ID=gene3202;Name=SFV_RS16105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16105;old_locus_tag=SFV_2902 NC_008258.1 Protein Homology CDS 2970076 2970483 . - 0 ID=cds3131;Parent=gene3202;Dbxref=Genbank:WP_001078387.1;Name=WP_001078387.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001078387.1;transl_table=11 NC_008258.1 RefSeq gene 2970480 2971043 . - . ID=gene3203;Name=SFV_RS16110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16110;old_locus_tag=SFV_2903 NC_008258.1 Protein Homology CDS 2970480 2971043 . - 0 ID=cds3132;Parent=gene3203;Dbxref=Genbank:WP_001144322.1;Name=WP_001144322.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001144322.1;transl_table=11 NC_008258.1 RefSeq gene 2971034 2971504 . - . ID=gene3204;Name=SFV_RS16115;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16115;pseudo=true NC_008258.1 Protein Homology CDS 2971034 2971504 . - 0 ID=cds3133;Parent=gene3204;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(2971370..2971372)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2971688 2972482 . - . ID=gene3205;Name=SFV_RS16120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16120;old_locus_tag=SFV_2905 NC_008258.1 Protein Homology CDS 2971688 2972482 . - 0 ID=cds3134;Parent=gene3205;Dbxref=Genbank:WP_000816233.1;Name=WP_000816233.1;gbkey=CDS;product=thymidylate synthase;protein_id=WP_000816233.1;transl_table=11 NC_008258.1 RefSeq gene 2972489 2973364 . - . ID=gene3206;Name=SFV_RS16125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16125;old_locus_tag=SFV_2906 NC_008258.1 Protein Homology CDS 2972489 2973364 . - 0 ID=cds3135;Parent=gene3206;Dbxref=Genbank:WP_000204658.1;Name=WP_000204658.1;gbkey=CDS;product=prolipoprotein diacylglyceryl transferase;protein_id=WP_000204658.1;transl_table=11 NC_008258.1 RefSeq gene 2973515 2975761 . - . ID=gene3207;Name=SFV_RS16130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16130;old_locus_tag=SFV_2907 NC_008258.1 Protein Homology CDS 2973515 2975761 . - 0 ID=cds3136;Parent=gene3207;Dbxref=Genbank:WP_000957924.1;Name=WP_000957924.1;Note=member of a second PTS chain involved in nitrogen metabolism%3B PtsP phosphorylates NPr;gbkey=CDS;product=phosphoenolpyruvate-protein phosphotransferase;protein_id=WP_000957924.1;transl_table=11 NC_008258.1 RefSeq gene 2975774 2976304 . - . ID=gene3208;Name=SFV_RS16135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16135;old_locus_tag=SFV_2908 NC_008258.1 Protein Homology CDS 2975774 2976304 . - 0 ID=cds3137;Parent=gene3208;Dbxref=Genbank:WP_000564489.1;Name=WP_000564489.1;Note=hydrolyzes diadenosine polyphosphate;gbkey=CDS;product=RNA pyrophosphohydrolase;protein_id=WP_000564489.1;transl_table=11 NC_008258.1 RefSeq gene 2976616 2976810 . + . ID=gene3209;Name=SFV_RS16140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16140 NC_008258.1 Protein Homology CDS 2976616 2976810 . + 0 ID=cds3138;Parent=gene3209;Dbxref=Genbank:WP_032157132.1;Name=WP_032157132.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032157132.1;transl_table=11 NC_008258.1 RefSeq gene 2976749 2976910 . + . ID=gene3210;Name=SFV_RS16145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16145 NC_008258.1 Protein Homology CDS 2976749 2976910 . + 0 ID=cds3139;Parent=gene3210;Dbxref=Genbank:WP_000860229.1;Name=WP_000860229.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000860229.1;transl_table=11 NC_008258.1 RefSeq gene 2976989 2977678 . + . ID=gene3211;Name=SFV_RS16150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16150;old_locus_tag=SFV_2909 NC_008258.1 Protein Homology CDS 2976989 2977678 . + 0 ID=cds3140;Parent=gene3211;Dbxref=Genbank:WP_000082199.1;Name=WP_000082199.1;Note=MutH%3B Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair;gbkey=CDS;product=DNA mismatch repair protein MutH;protein_id=WP_000082199.1;transl_table=11 NC_008258.1 RefSeq gene 2977747 2978460 . + . ID=gene3212;Name=SFV_RS16155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16155;old_locus_tag=SFV_2910 NC_008258.1 Protein Homology CDS 2977747 2978460 . + 0 ID=cds3141;Parent=gene3212;Dbxref=Genbank:WP_000895627.1;Name=WP_000895627.1;gbkey=CDS;product=transporter;protein_id=WP_000895627.1;transl_table=11 NC_008258.1 RefSeq gene 2978598 2978816 . + . ID=gene3213;Name=SFV_RS16160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16160;old_locus_tag=SFV_2911 NC_008258.1 Protein Homology CDS 2978598 2978816 . + 0 ID=cds3142;Parent=gene3213;Dbxref=Genbank:WP_000758653.1;Name=WP_000758653.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000758653.1;transl_table=11 NC_008258.1 RefSeq gene 2978924 2979964 . + . ID=gene3214;Name=tas;gbkey=Gene;gene=tas;gene_biotype=protein_coding;locus_tag=SFV_RS16165;old_locus_tag=SFV_2912 NC_008258.1 Protein Homology CDS 2978924 2979964 . + 0 ID=cds3143;Parent=gene3214;Dbxref=Genbank:WP_001199295.1;Name=WP_001199295.1;Note=complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain%3B member of the aldo/keto reductase 2 family%3B crystal structure of purified Escherichia coli protein shows bound NADPH;gbkey=CDS;gene=tas;product=protein tas;protein_id=WP_001199295.1;transl_table=11 NC_008258.1 RefSeq gene 2979997 2981187 . - . ID=gene3215;Name=SFV_RS16170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16170;old_locus_tag=SFV_2913 NC_008258.1 Protein Homology CDS 2979997 2981187 . - 0 ID=cds3144;Parent=gene3215;Dbxref=Genbank:WP_000004637.1;Name=WP_000004637.1;gbkey=CDS;product=lysophospholipid transporter LplT;protein_id=WP_000004637.1;transl_table=11 NC_008258.1 RefSeq gene 2981180 2983339 . - . ID=gene3216;Name=SFV_RS16175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16175;old_locus_tag=SFV_2914 NC_008258.1 Protein Homology CDS 2981180 2983339 . - 0 ID=cds3145;Parent=gene3216;Dbxref=Genbank:WP_000899047.1;Name=WP_000899047.1;Note=Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1;gbkey=CDS;product=bifunctional protein Aas;protein_id=WP_000899047.1;transl_table=11 NC_008258.1 RefSeq gene 2983925 2984956 . + . ID=gene3217;Name=SFV_RS16180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16180;old_locus_tag=SFV_2915 NC_008258.1 Protein Homology CDS 2983925 2984956 . + 0 ID=cds3146;Parent=gene3217;Dbxref=Genbank:WP_000201052.1;Name=WP_000201052.1;Note=controls transcription of galETKM;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000201052.1;transl_table=11 NC_008258.1 RefSeq gene 2984963 2986225 . - . ID=gene3218;Name=SFV_RS16185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16185;old_locus_tag=SFV_2916 NC_008258.1 Protein Homology CDS 2984963 2986225 . - 0 ID=cds3147;Parent=gene3218;Dbxref=Genbank:WP_001120740.1;Name=WP_001120740.1;Note=catalyzes the decarboxylation of diaminopimelate into lysine%3B pyridoxal phosphate(PLP)-binding;gbkey=CDS;product=diaminopimelate decarboxylase;protein_id=WP_001120740.1;transl_table=11 NC_008258.1 RefSeq gene 2986347 2987282 . + . ID=gene3219;Name=SFV_RS16190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16190;old_locus_tag=SFV_2917 NC_008258.1 Protein Homology CDS 2986347 2987282 . + 0 ID=cds3148;Parent=gene3219;Dbxref=Genbank:WP_000741835.1;Name=WP_000741835.1;Note=activates the transcription of the lysA gene encoding diaminopimelate decarboxylase;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000741835.1;transl_table=11 NC_008258.1 RefSeq gene 2987269 2987961 . - . ID=gene3220;Name=SFV_RS16195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16195 NC_008258.1 Protein Homology CDS 2987269 2987961 . - 0 ID=cds3149;Parent=gene3220;Dbxref=Genbank:WP_000848640.1;Name=WP_000848640.1;gbkey=CDS;product=racemase;protein_id=WP_000848640.1;transl_table=11 NC_008258.1 RefSeq gene 2988090 2989506 . - . ID=gene3221;Name=SFV_RS16200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16200;pseudo=true NC_008258.1 Protein Homology CDS 2988090 2989506 . - 0 ID=cds3150;Parent=gene3221;exception=annotated by transcript or proteomic data;gbkey=CDS;product=arabinose:proton symporter;pseudo=true;transl_except=(pos:complement(2988292..2988294)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 2989821 2990582 . - . ID=gene3222;Name=SFV_RS16205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16205;old_locus_tag=SFV_2920 NC_008258.1 Protein Homology CDS 2989821 2990582 . - 0 ID=cds3151;Parent=gene3222;Dbxref=Genbank:WP_000603535.1;Name=WP_000603535.1;Note=catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate;gbkey=CDS;product=2-deoxy-D-gluconate 3-dehydrogenase;protein_id=WP_000603535.1;transl_table=11 NC_008258.1 RefSeq gene 2990612 2991448 . - . ID=gene3223;Name=SFV_RS16210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16210;old_locus_tag=SFV_2921 NC_008258.1 Protein Homology CDS 2990612 2991448 . - 0 ID=cds3152;Parent=gene3223;Dbxref=Genbank:WP_000383213.1;Name=WP_000383213.1;Note=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase%3B catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2%2C5-hexodiulosonate;gbkey=CDS;product=4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase;protein_id=WP_000383213.1;transl_table=11 NC_008258.1 RefSeq gene 2991735 2992916 . - . ID=gene3224;Name=SFV_RS16215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16215;old_locus_tag=SFV_2922 NC_008258.1 Protein Homology CDS 2991735 2992916 . - 0 ID=cds3153;Parent=gene3224;Dbxref=Genbank:WP_000656022.1;Name=WP_000656022.1;gbkey=CDS;product=acetyl-CoA acetyltransferase;protein_id=WP_000656022.1;transl_table=11 NC_008258.1 RefSeq gene 2993282 2994395 . + . ID=gene3225;Name=SFV_RS16220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16220;pseudo=true NC_008258.1 Protein Homology CDS 2993282 2994395 . + 0 ID=cds3154;Parent=gene3225;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 2994962 2996222 . + . ID=id493;gbkey=repeat_region NC_008258.1 RefSeq region 2994965 2996222 . + . ID=id494;gbkey=mobile_element NC_008258.1 RefSeq gene 2995030 2995329 . + . ID=gene3226;Name=SFV_RS16225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16225;old_locus_tag=SFV_2924 NC_008258.1 Protein Homology CDS 2995030 2995329 . + 0 ID=cds3155;Parent=gene3226;Dbxref=Genbank:WP_000169527.1;Name=WP_000169527.1;gbkey=CDS;product=transposase;protein_id=WP_000169527.1;transl_table=11 NC_008258.1 RefSeq gene 2995326 2996192 . + . ID=gene3227;Name=SFV_RS16230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16230;old_locus_tag=SFV_2925 NC_008258.1 Protein Homology CDS 2995326 2996192 . + 0 ID=cds3156;Parent=gene3227;Dbxref=Genbank:WP_011587267.1;Name=WP_011587267.1;gbkey=CDS;product=transposase;protein_id=WP_011587267.1;transl_table=11 NC_008258.1 RefSeq gene 2996206 2996769 . - . ID=gene3228;Name=SFV_RS16235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16235;old_locus_tag=SFV_2926 NC_008258.1 Protein Homology CDS 2996206 2996769 . - 0 ID=cds3157;Parent=gene3228;Dbxref=Genbank:WP_005089256.1;Name=WP_005089256.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005089256.1;transl_table=11 NC_008258.1 RefSeq gene 2996991 2997064 . - . ID=gene3229;Name=SFV_RS16240;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS16240;old_locus_tag=SFV_2927 NC_008258.1 tRNAscan-SE tRNA 2996991 2997064 . - . ID=rna71;Parent=gene3229;anticodon=(pos:complement(2997030..2997032));gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 2996991 2997064 . - . ID=id495;Parent=rna71;anticodon=(pos:complement(2997030..2997032));gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 2997143 2997898 . - . ID=gene3230;Name=SFV_RS16245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16245;old_locus_tag=SFV_2928 NC_008258.1 Protein Homology CDS 2997143 2997898 . - 0 ID=cds3158;Parent=gene3230;Dbxref=Genbank:WP_005051685.1;Name=WP_005051685.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051685.1;transl_table=11 NC_008258.1 RefSeq repeat_region 2998010 2998787 . + . ID=id496;gbkey=repeat_region NC_008258.1 RefSeq region 2998015 2998782 . + . ID=id497;gbkey=mobile_element NC_008258.1 RefSeq gene 2998121 2998345 . + . ID=gene3231;Name=SFV_RS16250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16250 NC_008258.1 Protein Homology CDS 2998121 2998345 . + 0 ID=cds3159;Parent=gene3231;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 2998372 2998767 . + . ID=gene3232;Name=SFV_RS16255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16255 NC_008258.1 Protein Homology CDS 2998372 2998767 . + 0 ID=cds3160;Parent=gene3232;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 2999090 3001387 . + . ID=gene3233;Name=SFV_RS16260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16260;old_locus_tag=SFV_2931 NC_008258.1 Protein Homology CDS 2999090 3001387 . + 0 ID=cds3161;Parent=gene3233;Dbxref=Genbank:WP_000388170.1;Name=WP_000388170.1;Note=molybdenum cofactor-binding protein%3B participates in purine salvage;gbkey=CDS;product=xanthine dehydrogenase subunit A;protein_id=WP_000388170.1;transl_table=11 NC_008258.1 RefSeq gene 3001398 3002276 . + . ID=gene3234;Name=SFV_RS16265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16265;old_locus_tag=SFV_2932 NC_008258.1 Protein Homology CDS 3001398 3002276 . + 0 ID=cds3162;Parent=gene3234;Dbxref=Genbank:WP_000459182.1;Name=WP_000459182.1;Note=FAD-binding subunit%3B with XdhA and XdhC participates in purine salvage;gbkey=CDS;product=xanthine dehydrogenase FAD-binding subunit;protein_id=WP_000459182.1;transl_table=11 NC_008258.1 RefSeq gene 3002273 3002752 . + . ID=gene3235;Name=SFV_RS16270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16270;old_locus_tag=SFV_2933 NC_008258.1 Protein Homology CDS 3002273 3002752 . + 0 ID=cds3163;Parent=gene3235;Dbxref=Genbank:WP_001016618.1;Name=WP_001016618.1;Note=iron-sulfur-binding subunit%3B with XdhA and XdhB participates in purine salvage;gbkey=CDS;product=xanthine dehydrogenase subunit C;protein_id=WP_001016618.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3002807 3003580 . + . ID=id498;gbkey=repeat_region NC_008258.1 RefSeq region 3002810 3003577 . + . ID=id499;gbkey=mobile_element NC_008258.1 RefSeq gene 3002916 3003140 . + . ID=gene3236;Name=SFV_RS16275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16275 NC_008258.1 Protein Homology CDS 3002916 3003140 . + 0 ID=cds3164;Parent=gene3236;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3003167 3003562 . + . ID=gene3237;Name=SFV_RS16280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16280 NC_008258.1 Protein Homology CDS 3003167 3003562 . + 0 ID=cds3165;Parent=gene3237;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 3003754 3003942 . + . ID=gene3238;Name=SFV_RS16285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16285;pseudo=true NC_008258.1 Protein Homology CDS 3003754 3003942 . + 0 ID=cds3166;Parent=gene3238;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3003838..3003840%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3003887 3005335 . + . ID=gene3239;Name=SFV_RS16290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16290;old_locus_tag=SFV_2936 NC_008258.1 Protein Homology CDS 3003887 3005335 . + 0 ID=cds3167;Parent=gene3239;Dbxref=Genbank:WP_005105789.1;Name=WP_005105789.1;gbkey=CDS;product=purine permease;protein_id=WP_005105789.1;transl_table=11 NC_008258.1 RefSeq gene 3005337 3005462 . + . ID=gene3240;Name=SFV_RS16295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16295 NC_008258.1 Protein Homology CDS 3005337 3005462 . + 0 ID=cds3168;Parent=gene3240;Dbxref=Genbank:WP_001010156.1;Name=WP_001010156.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001010156.1;transl_table=11 NC_008258.1 RefSeq gene 3005585 3006133 . + . ID=gene3241;Name=SFV_RS16300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16300;old_locus_tag=SFV_2937 NC_008258.1 Protein Homology CDS 3005585 3006133 . + 0 ID=cds3169;Parent=gene3241;Dbxref=Genbank:WP_001192802.1;Name=WP_001192802.1;Note=catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate;gbkey=CDS;product=isopentenyl-diphosphate delta isomerase;protein_id=WP_001192802.1;transl_table=11 NC_008258.1 RefSeq gene 3006176 3007693 . - . ID=gene3242;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=SFV_RS16305;old_locus_tag=SFV_2938 NC_008258.1 Protein Homology CDS 3006176 3007693 . - 0 ID=cds3170;Parent=gene3242;Dbxref=Genbank:WP_000003068.1;Name=WP_000003068.1;Note=class II%3B LysRS2%3B catalyzes a two-step reaction%2C first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP%2C followed by transfer of the aminoacyl-adenylate to its tRNA%3B in Methanosarcina barkeri%2C LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1;gbkey=CDS;gene=lysS;product=lysine--tRNA ligase;protein_id=WP_000003068.1;transl_table=11 NC_008258.1 RefSeq gene 3007703 3008584 . - . ID=gene3243;Name=SFV_RS16310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16310 NC_008258.1 Protein Homology CDS 3007703 3008584 . - 0 ID=cds3171;Parent=gene3243;Dbxref=Genbank:WP_000808990.1;Name=WP_000808990.1;Note=catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA;gbkey=CDS;product=peptide chain release factor 2;protein_id=WP_000808990.1;transl_table=11 NC_008258.1 RefSeq gene 3008892 3010625 . - . ID=gene3244;Name=SFV_RS16315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16315;old_locus_tag=SFV_2940 NC_008258.1 Protein Homology CDS 3008892 3010625 . - 0 ID=cds3172;Parent=gene3244;Dbxref=Genbank:WP_000813187.1;Name=WP_000813187.1;Note=5'-3' single-stranded-DNA-specific exonuclease;gbkey=CDS;product=ssDNA exonuclease RecJ;protein_id=WP_000813187.1;transl_table=11 NC_008258.1 RefSeq gene 3010631 3011341 . - . ID=gene3245;Name=SFV_RS16320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16320;old_locus_tag=SFV_2941 NC_008258.1 Protein Homology CDS 3010631 3011341 . - 0 ID=cds3173;Parent=gene3245;Dbxref=Genbank:WP_000715213.1;Name=WP_000715213.1;Note=DsbC%3B periplasmic protein with protein disulfide isomerase activity%3B this protein also shows disulfide oxidoreductase activity;gbkey=CDS;product=protein-disulfide isomerase;protein_id=WP_000715213.1;transl_table=11 NC_008258.1 RefSeq gene 3011366 3012262 . - . ID=gene3246;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=SFV_RS16325;old_locus_tag=SFV_2942 NC_008258.1 Protein Homology CDS 3011366 3012262 . - 0 ID=cds3174;Parent=gene3246;Dbxref=Genbank:WP_000806638.1;Name=WP_000806638.1;Note=site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B XerD specifically exchanges the bottom strands%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs;gbkey=CDS;gene=xerD;product=tyrosine recombinase XerD;protein_id=WP_000806638.1;transl_table=11 NC_008258.1 RefSeq gene 3012374 3012895 . + . ID=gene3247;Name=SFV_RS16330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16330;old_locus_tag=SFV_2943 NC_008258.1 Protein Homology CDS 3012374 3012895 . + 0 ID=cds3175;Parent=gene3247;Dbxref=Genbank:WP_001055867.1;Name=WP_001055867.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic;gbkey=CDS;product=flavodoxin;protein_id=WP_001055867.1;transl_table=11 NC_008258.1 RefSeq gene 3012935 3013342 . - . ID=gene3248;Name=SFV_RS16335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16335;old_locus_tag=SFV_2944 NC_008258.1 Protein Homology CDS 3012935 3013342 . - 0 ID=cds3176;Parent=gene3248;Dbxref=Genbank:WP_000244767.1;Name=WP_000244767.1;gbkey=CDS;product=membrane protein;protein_id=WP_000244767.1;transl_table=11 NC_008258.1 RefSeq gene 3013323 3013589 . - . ID=gene3249;Name=SFV_RS16340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16340;old_locus_tag=SFV_2945 NC_008258.1 Protein Homology CDS 3013323 3013589 . - 0 ID=cds3177;Parent=gene3249;Dbxref=Genbank:WP_000354044.1;Name=WP_000354044.1;gbkey=CDS;product=antitoxin CptB;protein_id=WP_000354044.1;transl_table=11 NC_008258.1 RefSeq gene 3013832 3014812 . + . ID=gene3250;Name=ygfZ;gbkey=Gene;gene=ygfZ;gene_biotype=protein_coding;locus_tag=SFV_RS16345;old_locus_tag=SFV_2946 NC_008258.1 Protein Homology CDS 3013832 3014812 . + 0 ID=cds3178;Parent=gene3250;Dbxref=Genbank:WP_000886062.1;Name=WP_000886062.1;Note=physiological role is not clear%3B not essential for growth but mutants grow poorly%3B mutations suppress hda null mutations%3B may be involved in regulation of ATP-DnaA levels%3B may also be involved in regulation of tRNA modifications%3B can bind folic acid and tetrahydrofolate%3B forms a three domain ring-like structure with a central channel%3B structurally similar to DMGO protein from A. globiformis%3B shows sequence similarity to yeast CAF17 transcriptional regulato%3B Hda supressor;gbkey=CDS;gene=ygfZ;product=tRNA-modifying protein YgfZ;protein_id=WP_000886062.1;transl_table=11 NC_008258.1 RefSeq gene 3015008 3015667 . - . ID=gene3251;Name=SFV_RS16350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16350;old_locus_tag=SFV_2947 NC_008258.1 Protein Homology CDS 3015008 3015667 . - 0 ID=cds3179;Parent=gene3251;Dbxref=Genbank:WP_000250267.1;Name=WP_000250267.1;gbkey=CDS;product=hemolysin;protein_id=WP_000250267.1;transl_table=11 NC_008258.1 RefSeq gene 3015831 3016141 . - . ID=gene3252;Name=SFV_RS16355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16355;pseudo=true NC_008258.1 Protein Homology CDS 3015831 3016141 . - 0 ID=cds3180;Parent=gene3252;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3016186 3017618 . + . ID=gene3253;Name=SFV_RS16360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16360;old_locus_tag=SFV_2949;pseudo=true NC_008258.1 Protein Homology CDS 3016186 3017618 . + 0 ID=cds3181;Parent=gene3253;exception=annotated by transcript or proteomic data;gbkey=CDS;product=6-phospho-beta-glucosidase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3017675 3018418 . - . ID=gene3254;Name=SFV_RS16365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16365;pseudo=true NC_008258.1 Protein Homology CDS 3017675 3018418 . - 0 ID=cds3182;Parent=gene3254;gbkey=CDS;product=NAD(P)-binding oxidoreductase;pseudo=true;transl_except=(pos:complement(3018224..3018226)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3018685 3021558 . - . ID=gene3255;Name=SFV_RS16370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16370;old_locus_tag=SFV_2951 NC_008258.1 Protein Homology CDS 3018685 3021558 . - 0 ID=cds3183;Parent=gene3255;Dbxref=Genbank:WP_000195082.1;Name=WP_000195082.1;Note=acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine;gbkey=CDS;product=glycine dehydrogenase (decarboxylating);protein_id=WP_000195082.1;transl_table=11 NC_008258.1 RefSeq gene 3021677 3022066 . - . ID=gene3256;Name=SFV_RS16375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16375;old_locus_tag=SFV_2952 NC_008258.1 Protein Homology CDS 3021677 3022066 . - 0 ID=cds3184;Parent=gene3256;Dbxref=Genbank:WP_001295377.1;Name=WP_001295377.1;Note=part of multienzyme complex composed of H%2C L%2C P%2C and T proteins which catalyzes oxidation of glycine to yield carbon dioxide%2C ammonia%2C 5%2C10-CH2-H4folate and a reduced pyridine nucleotide%3B protein H is involved in transfer of methylamine group from the P to T protein%3B covalently bound to a lipoyl cofactor;gbkey=CDS;product=glycine cleavage system protein H;protein_id=WP_001295377.1;transl_table=11 NC_008258.1 RefSeq gene 3022090 3023184 . - . ID=gene3257;Name=gcvT;gbkey=Gene;gene=gcvT;gene_biotype=protein_coding;locus_tag=SFV_RS16380;old_locus_tag=SFV_2953 NC_008258.1 Protein Homology CDS 3022090 3023184 . - 0 ID=cds3185;Parent=gene3257;Dbxref=Genbank:WP_000068744.1;Name=WP_000068744.1;Note=catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate%2C causing the release of ammonia and the generation of reduced GcvH protein;gbkey=CDS;gene=gcvT;product=aminomethyltransferase;protein_id=WP_000068744.1;transl_table=11 NC_008258.1 RefSeq gene 3023632 3024834 . - . ID=gene3258;Name=SFV_RS16385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16385;old_locus_tag=SFV_2954 NC_008258.1 Protein Homology CDS 3023632 3024834 . - 0 ID=cds3186;Parent=gene3258;Dbxref=Genbank:WP_001192222.1;Name=WP_001192222.1;gbkey=CDS;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_001192222.1;transl_table=11 NC_008258.1 RefSeq gene 3024857 3026035 . - . ID=gene3259;Name=SFV_RS16390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16390;old_locus_tag=SFV_2955 NC_008258.1 Protein Homology CDS 3024857 3026035 . - 0 ID=cds3187;Parent=gene3259;Dbxref=Genbank:WP_000111174.1;Name=WP_000111174.1;Note=Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1%2C4-benzoquinone;gbkey=CDS;product=2-octaprenyl-6-methoxyphenyl hydroxylase;protein_id=WP_000111174.1;transl_table=11 NC_008258.1 RefSeq gene 3026032 3027357 . - . ID=gene3260;Name=SFV_RS16395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16395;old_locus_tag=SFV_2956 NC_008258.1 Protein Homology CDS 3026032 3027357 . - 0 ID=cds3188;Parent=gene3260;Dbxref=Genbank:WP_001290098.1;Name=WP_001290098.1;Note=exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue%3B substrate can be as short as a dipeptide;gbkey=CDS;product=proline aminopeptidase P II;protein_id=WP_001290098.1;transl_table=11 NC_008258.1 RefSeq gene 3027383 3027967 . - . ID=gene3261;Name=SFV_RS16400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16400;old_locus_tag=SFV_2957 NC_008258.1 Protein Homology CDS 3027383 3027967 . - 0 ID=cds3189;Parent=gene3261;Dbxref=Genbank:WP_000930123.1;Name=WP_000930123.1;Note=the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers%3B function unknown;gbkey=CDS;product=hypothetical protein;protein_id=WP_000930123.1;transl_table=11 NC_008258.1 RefSeq gene 3028129 3028458 . + . ID=gene3262;Name=SFV_RS16405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16405;old_locus_tag=SFV_2958 NC_008258.1 Protein Homology CDS 3028129 3028458 . + 0 ID=cds3190;Parent=gene3262;Dbxref=Genbank:WP_001276008.1;Name=WP_001276008.1;gbkey=CDS;product=cell division protein ZapA;protein_id=WP_001276008.1;transl_table=11 NC_008258.1 RefSeq gene 3028704 3029306 . + . ID=gene3263;Name=SFV_RS16410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16410;old_locus_tag=SFV_2959 NC_008258.1 Protein Homology CDS 3028704 3029306 . + 0 ID=cds3191;Parent=gene3263;Dbxref=Genbank:WP_000192745.1;Name=WP_000192745.1;Note=ygfA expression increases five to eight fold in Escherichia coli cells growing as biofilms%3B unknown function;gbkey=CDS;product=5-formyltetrahydrofolate cyclo-ligase;protein_id=WP_000192745.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3029320 3029525 . + . ID=id500;gbkey=repeat_region NC_008258.1 RefSeq gene 3029479 3029708 . - . ID=gene3264;Name=SFV_RS16415;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16415;pseudo=true NC_008258.1 Protein Homology CDS 3029479 3029708 . - 0 ID=cds3192;Parent=gene3264;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3029712 3029917 . + . ID=id501;gbkey=repeat_region NC_008258.1 RefSeq gene 3030087 3031319 . - . ID=gene3265;Name=SFV_RS16420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16420;old_locus_tag=SFV_2960 NC_008258.1 Protein Homology CDS 3030087 3031319 . - 0 ID=cds3193;Parent=gene3265;Dbxref=Genbank:WP_001151604.1;Name=WP_001151604.1;Note=catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis%3B can also reduce alpha ketoglutarate to form 2-hydroxyglutarate;gbkey=CDS;product=D-3-phosphoglycerate dehydrogenase;protein_id=WP_001151604.1;transl_table=11 NC_008258.1 RefSeq gene 3031575 3032234 . - . ID=gene3266;Name=SFV_RS16425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16425;old_locus_tag=SFV_2961 NC_008258.1 Protein Homology CDS 3031575 3032234 . - 0 ID=cds3194;Parent=gene3266;Dbxref=Genbank:WP_000189743.1;Name=WP_000189743.1;Note=catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway;gbkey=CDS;product=ribose-5-phosphate isomerase A;protein_id=WP_000189743.1;transl_table=11 NC_008258.1 RefSeq gene 3032617 3033510 . + . ID=gene3267;Name=SFV_RS16430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16430;old_locus_tag=SFV_2962 NC_008258.1 Protein Homology CDS 3032617 3033510 . + 0 ID=cds3195;Parent=gene3267;Dbxref=Genbank:WP_000828351.1;Name=WP_000828351.1;Note=specific inhibitor of chromosomal initiation of replication in vitro%3B binds the three 13-mers in the origin (oriC) to block initiation of replication%3B also controls genes involved in arginine transport;gbkey=CDS;product=chromosome initiation inhibitor;protein_id=WP_000828351.1;transl_table=11 NC_008258.1 RefSeq gene 3033714 3035858 . + . ID=gene3268;Name=SFV_RS16435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16435;old_locus_tag=SFV_2963 NC_008258.1 Protein Homology CDS 3033714 3035858 . + 0 ID=cds3196;Parent=gene3268;Dbxref=Genbank:WP_000064244.1;Name=WP_000064244.1;gbkey=CDS;product=methylmalonyl-CoA mutase;protein_id=WP_000064244.1;transl_table=11 NC_008258.1 RefSeq gene 3035851 3036846 . + . ID=gene3269;Name=SFV_RS16440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16440;old_locus_tag=SFV_2964 NC_008258.1 Protein Homology CDS 3035851 3036846 . + 0 ID=cds3197;Parent=gene3269;Dbxref=Genbank:WP_000606499.1;Name=WP_000606499.1;gbkey=CDS;product=protein kinase;protein_id=WP_000606499.1;transl_table=11 NC_008258.1 RefSeq gene 3036857 3037642 . + . ID=gene3270;Name=SFV_RS16445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16445;old_locus_tag=SFV_2965 NC_008258.1 Protein Homology CDS 3036857 3037642 . + 0 ID=cds3198;Parent=gene3270;Dbxref=Genbank:WP_000122063.1;Name=WP_000122063.1;Note=catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA;gbkey=CDS;product=methylmalonyl-CoA decarboxylase;protein_id=WP_000122063.1;transl_table=11 NC_008258.1 RefSeq gene 3037666 3039144 . + . ID=gene3271;Name=SFV_RS16450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16450;old_locus_tag=SFV_2966 NC_008258.1 Protein Homology CDS 3037666 3039144 . + 0 ID=cds3199;Parent=gene3271;Dbxref=Genbank:WP_000449925.1;Name=WP_000449925.1;gbkey=CDS;product=acetyl-CoA hydrolase;protein_id=WP_000449925.1;transl_table=11 NC_008258.1 RefSeq gene 3039614 3040036 . - . ID=gene3272;Name=SFV_RS16455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16455;old_locus_tag=SFV_2967 NC_008258.1 Protein Homology CDS 3039614 3040036 . - 0 ID=cds3200;Parent=gene3272;Dbxref=Genbank:WP_000350798.1;Name=WP_000350798.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000350798.1;transl_table=11 NC_008258.1 RefSeq gene 3040203 3040943 . - . ID=gene3273;Name=SFV_RS16460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16460;old_locus_tag=SFV_2968 NC_008258.1 Protein Homology CDS 3040203 3040943 . - 0 ID=cds3201;Parent=gene3273;Dbxref=Genbank:WP_000669834.1;Name=WP_000669834.1;gbkey=CDS;product=oxidative stress defense protein;protein_id=WP_000669834.1;transl_table=11 NC_008258.1 RefSeq gene 3041036 3041629 . - . ID=gene3274;Name=SFV_RS16465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16465;old_locus_tag=SFV_2969 NC_008258.1 Protein Homology CDS 3041036 3041629 . - 0 ID=cds3202;Parent=gene3274;Dbxref=Genbank:WP_011587268.1;Name=WP_011587268.1;Note=Involved in the export of arginine;gbkey=CDS;product=arginine exporter protein;protein_id=WP_011587268.1;transl_table=11 NC_008258.1 RefSeq gene 3041810 3042670 . - . ID=gene3275;Name=SFV_RS16470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16470;old_locus_tag=SFV_2970 NC_008258.1 Protein Homology CDS 3041810 3042670 . - 0 ID=cds3203;Parent=gene3275;Dbxref=Genbank:WP_000389818.1;Name=WP_000389818.1;Note=participates in the regulation of osmotic pressure changes within the cel;gbkey=CDS;product=small-conductance mechanosensitive channel;protein_id=WP_000389818.1;transl_table=11 NC_008258.1 RefSeq gene 3042861 3043940 . - . ID=gene3276;Name=SFV_RS16475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16475;old_locus_tag=SFV_2971 NC_008258.1 Protein Homology CDS 3042861 3043940 . - 0 ID=cds3204;Parent=gene3276;Dbxref=Genbank:WP_000034372.1;Name=WP_000034372.1;Note=catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1%2C6%2C bisphosphate;gbkey=CDS;product=fructose-bisphosphate aldolase;protein_id=WP_000034372.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3043977 3044092 . + . ID=id502;gbkey=repeat_region NC_008258.1 RefSeq gene 3044155 3045318 . - . ID=gene3277;Name=SFV_RS16480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16480;old_locus_tag=SFV_2972 NC_008258.1 Protein Homology CDS 3044155 3045318 . - 0 ID=cds3205;Parent=gene3277;Dbxref=Genbank:WP_000111269.1;Name=WP_000111269.1;gbkey=CDS;product=phosphoglycerate kinase;protein_id=WP_000111269.1;transl_table=11 NC_008258.1 RefSeq gene 3045368 3046387 . - . ID=gene3278;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=SFV_RS16485;old_locus_tag=SFV_2973 NC_008258.1 Protein Homology CDS 3045368 3046387 . - 0 ID=cds3206;Parent=gene3278;Dbxref=Genbank:WP_000218480.1;Name=WP_000218480.1;Note=required for glycolysis%3B catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate;gbkey=CDS;gene=gapA;product=D-erythrose-4-phosphate dehydrogenase;protein_id=WP_000218480.1;transl_table=11 NC_008258.1 RefSeq gene 3046759 3047190 . + . ID=gene3279;Name=SFV_RS16490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16490;old_locus_tag=SFV_2974 NC_008258.1 Protein Homology CDS 3046759 3047190 . + 0 ID=cds3207;Parent=gene3279;Dbxref=Genbank:WP_000988718.1;Name=WP_000988718.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000988718.1;transl_table=11 NC_008258.1 RefSeq gene 3047213 3047791 . + . ID=gene3280;Name=SFV_RS16495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16495;old_locus_tag=SFV_2975 NC_008258.1 Protein Homology CDS 3047213 3047791 . + 0 ID=cds3208;Parent=gene3280;Dbxref=Genbank:WP_000124315.1;Name=WP_000124315.1;gbkey=CDS;product=membrane protein;protein_id=WP_000124315.1;transl_table=11 NC_008258.1 RefSeq gene 3047792 3048499 . + . ID=gene3281;Name=SFV_RS16500;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16500;pseudo=true NC_008258.1 Protein Homology CDS 3047792 3048499 . + 0 ID=cds3209;Parent=gene3281;gbkey=CDS;product=cobalt ABC transporter permease;pseudo=true;transl_except=(pos:3048098..3048100%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3048487 3049164 . + . ID=gene3282;Name=SFV_RS16505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16505;old_locus_tag=SFV_2978 NC_008258.1 Protein Homology CDS 3048487 3049164 . + 0 ID=cds3210;Parent=gene3282;Dbxref=Genbank:WP_000256979.1;Name=WP_000256979.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000256979.1;transl_table=11 NC_008258.1 RefSeq gene 3049302 3049835 . + . ID=gene3283;Name=SFV_RS16510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16510;old_locus_tag=SFV_2979 NC_008258.1 Protein Homology CDS 3049302 3049835 . + 0 ID=cds3211;Parent=gene3283;Dbxref=Genbank:WP_005105800.1;Name=WP_005105800.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_005105800.1;transl_table=11 NC_008258.1 RefSeq gene 3049807 3050520 . - . ID=gene3284;Name=SFV_RS16515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16515;old_locus_tag=SFV_2980 NC_008258.1 Protein Homology CDS 3049807 3050520 . - 0 ID=cds3212;Parent=gene3284;Dbxref=Genbank:WP_000687749.1;Name=WP_000687749.1;gbkey=CDS;product=nucleoside triphosphate hydrolase;protein_id=WP_000687749.1;transl_table=11 NC_008258.1 RefSeq gene 3050517 3051026 . - . ID=gene3285;Name=SFV_RS16520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16520;old_locus_tag=SFV_2981 NC_008258.1 Protein Homology CDS 3050517 3051026 . - 0 ID=cds3213;Parent=gene3285;Dbxref=Genbank:WP_000224135.1;Name=WP_000224135.1;gbkey=CDS;product=mannitol repressor;protein_id=WP_000224135.1;transl_table=11 NC_008258.1 RefSeq gene 3051048 3052013 . - . ID=gene3286;Name=SFV_RS16525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16525;old_locus_tag=SFV_2982 NC_008258.1 Protein Homology CDS 3051048 3052013 . - 0 ID=cds3214;Parent=gene3286;Dbxref=Genbank:WP_000987277.1;Name=WP_000987277.1;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_000987277.1;transl_table=11 NC_008258.1 RefSeq gene 3052010 3053251 . - . ID=gene3287;Name=SFV_RS16530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16530;old_locus_tag=SFV_2983 NC_008258.1 Protein Homology CDS 3052010 3053251 . - 0 ID=cds3215;Parent=gene3287;Dbxref=Genbank:WP_000444991.1;Name=WP_000444991.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000444991.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3053235 3054008 . + . ID=id503;gbkey=repeat_region NC_008258.1 RefSeq region 3053238 3054005 . - . ID=id504;gbkey=mobile_element NC_008258.1 RefSeq gene 3053253 3053756 . - . ID=gene3288;Name=SFV_RS16535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16535;old_locus_tag=SFV_2984 NC_008258.1 Protein Homology CDS 3053253 3053756 . - 0 ID=cds3216;Parent=gene3288;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 3054313 3055221 . + . ID=gene3289;Name=SFV_RS16540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16540;old_locus_tag=SFV_2986 NC_008258.1 Protein Homology CDS 3054313 3055221 . + 0 ID=cds3217;Parent=gene3289;Dbxref=Genbank:WP_000646937.1;Name=WP_000646937.1;gbkey=CDS;product=serine protease;protein_id=WP_000646937.1;transl_table=11 NC_008258.1 RefSeq gene 3055267 3057258 . - . ID=gene3290;Name=SFV_RS16545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16545;old_locus_tag=SFV_2987 NC_008258.1 Protein Homology CDS 3055267 3057258 . - 0 ID=cds3218;Parent=gene3290;Dbxref=Genbank:WP_000098613.1;Name=WP_000098613.1;Note=catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate%3B can transfer ketol groups between several groups%3B in Escherichia coli there are two tkt genes%2C tktA expressed during exponential growth and the tktB during stationary phase;gbkey=CDS;product=transketolase;protein_id=WP_000098613.1;transl_table=11 NC_008258.1 RefSeq gene 3057536 3058294 . + . ID=gene3291;Name=SFV_RS16550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16550 NC_008258.1 Protein Homology CDS 3057536 3058294 . + 0 ID=cds3219;Parent=gene3291;Dbxref=Genbank:WP_024260305.1;Name=WP_024260305.1;gbkey=CDS;product=metalloprotease;protein_id=WP_024260305.1;transl_table=11 NC_008258.1 RefSeq gene 3058495 3059415 . - . ID=gene3292;Name=SFV_RS16555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16555;old_locus_tag=SFV_2989 NC_008258.1 Protein Homology CDS 3058495 3059415 . - 0 ID=cds3220;Parent=gene3292;Dbxref=Genbank:WP_000105566.1;Name=WP_000105566.1;Note=catalyzes the formation of putrescine from agmatine;gbkey=CDS;product=agmatinase;protein_id=WP_000105566.1;transl_table=11 NC_008258.1 RefSeq gene 3059551 3059934 . - . ID=gene3293;Name=SFV_RS16560;end_range=3059934,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16560;old_locus_tag=SFV_2990;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3059551 3059934 . - 0 ID=cds3221;Parent=gene3293;end_range=3059934,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3059932 3060707 . + . ID=id505;gbkey=repeat_region NC_008258.1 RefSeq region 3059936 3060703 . - . ID=id506;gbkey=mobile_element NC_008258.1 RefSeq gene 3059951 3060454 . - . ID=gene3294;Name=SFV_RS16565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16565;old_locus_tag=SFV_2991 NC_008258.1 Protein Homology CDS 3059951 3060454 . - 0 ID=cds3222;Parent=gene3294;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 3060795 3062771 . - . ID=gene3295;Name=SFV_RS16570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16570;old_locus_tag=SFV_2993 NC_008258.1 Protein Homology CDS 3060795 3062771 . - 0 ID=cds3223;Parent=gene3295;Dbxref=Genbank:WP_005096955.1;Name=WP_005096955.1;Note=catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis;gbkey=CDS;product=arginine decarboxylase;protein_id=WP_005096955.1;transl_table=11 NC_008258.1 RefSeq gene 3062780 3062911 . - . ID=gene3296;Name=SFV_RS16575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16575;old_locus_tag=SFV_2994 NC_008258.1 Protein Homology CDS 3062780 3062911 . - 0 ID=cds3224;Parent=gene3296;Dbxref=Genbank:WP_005051767.1;Name=WP_005051767.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051767.1;transl_table=11 NC_008258.1 RefSeq gene 3063047 3063262 . + . ID=gene3297;Name=SFV_RS16580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16580 NC_008258.1 Protein Homology CDS 3063047 3063262 . + 0 ID=cds3225;Parent=gene3297;Dbxref=Genbank:WP_011110620.1;Name=WP_011110620.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110620.1;transl_table=11 NC_008258.1 RefSeq gene 3063259 3063510 . - . ID=gene3298;Name=SFV_RS16585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16585;old_locus_tag=SFV_2995 NC_008258.1 Protein Homology CDS 3063259 3063510 . - 0 ID=cds3226;Parent=gene3298;Dbxref=Genbank:WP_001303651.1;Name=WP_001303651.1;gbkey=CDS;product=membrane protein;protein_id=WP_001303651.1;transl_table=11 NC_008258.1 RefSeq gene 3063566 3064720 . + . ID=gene3299;Name=SFV_RS16590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16590;old_locus_tag=SFV_2996 NC_008258.1 Protein Homology CDS 3063566 3064720 . + 0 ID=cds3227;Parent=gene3299;Dbxref=Genbank:WP_001062128.1;Name=WP_001062128.1;Note=catalyzes the formation of S-adenosylmethionine from methionine and ATP%3B methionine adenosyltransferase;gbkey=CDS;product=S-adenosylmethionine synthase;protein_id=WP_001062128.1;transl_table=11 NC_008258.1 RefSeq gene 3065155 3066549 . + . ID=gene3300;Name=SFV_RS16595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16595;old_locus_tag=SFV_2997 NC_008258.1 Protein Homology CDS 3065155 3066549 . + 0 ID=cds3228;Parent=gene3300;Dbxref=Genbank:WP_001112298.1;Name=WP_001112298.1;gbkey=CDS;product=D-galactose transporter;protein_id=WP_001112298.1;transl_table=11 NC_008258.1 RefSeq gene 3066626 3067123 . + . ID=gene3301;Name=SFV_RS16600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16600;old_locus_tag=SFV_2998 NC_008258.1 Protein Homology CDS 3066626 3067123 . + 0 ID=cds3229;Parent=gene3301;Dbxref=Genbank:WP_005051770.1;Name=WP_005051770.1;gbkey=CDS;product=protein SprT;protein_id=WP_005051770.1;transl_table=11 NC_008258.1 RefSeq gene 3067218 3067925 . + . ID=gene3302;Name=SFV_RS16605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16605;old_locus_tag=SFV_2999 NC_008258.1 Protein Homology CDS 3067218 3067925 . + 0 ID=cds3230;Parent=gene3302;Dbxref=Genbank:WP_000286517.1;Name=WP_000286517.1;gbkey=CDS;product=endonuclease;protein_id=WP_000286517.1;transl_table=11 NC_008258.1 RefSeq gene 3068005 3068736 . + . ID=gene3303;Name=SFV_RS16610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16610;old_locus_tag=SFV_3000 NC_008258.1 Protein Homology CDS 3068005 3068736 . + 0 ID=cds3231;Parent=gene3303;Dbxref=Genbank:WP_001222509.1;Name=WP_001222509.1;Note=in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA%3B cells lacking this function can grow%2C but are outcompeted by wild-type%3B SAM-dependent m(3)U1498 methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase E;protein_id=WP_001222509.1;transl_table=11 NC_008258.1 RefSeq gene 3068749 3069699 . + . ID=gene3304;Name=SFV_RS16615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16615;old_locus_tag=SFV_3001 NC_008258.1 Protein Homology CDS 3068749 3069699 . + 0 ID=cds3232;Parent=gene3304;Dbxref=Genbank:WP_000593267.1;Name=WP_000593267.1;Note=catalyzes the second step in the glutathione biosynthesis pathway%2C where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine %3D ADP + phosphate + glutathione;gbkey=CDS;product=glutathione synthetase;protein_id=WP_000593267.1;transl_table=11 NC_008258.1 RefSeq gene 3069808 3070371 . + . ID=gene3305;Name=SFV_RS16620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16620;old_locus_tag=SFV_3002 NC_008258.1 Protein Homology CDS 3069808 3070371 . + 0 ID=cds3233;Parent=gene3305;Dbxref=Genbank:WP_024260306.1;Name=WP_024260306.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260306.1;transl_table=11 NC_008258.1 RefSeq gene 3070371 3070787 . + . ID=gene3306;Name=SFV_RS16625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16625;old_locus_tag=SFV_3003 NC_008258.1 Protein Homology CDS 3070371 3070787 . + 0 ID=cds3234;Parent=gene3306;Dbxref=Genbank:WP_000017111.1;Name=WP_000017111.1;Note=similar to RuvC resolvase with substantial differences%3B NMR structural information suggests this protein is monomeric%3B unknown cellular function;gbkey=CDS;product=Holliday junction DNA helicase;protein_id=WP_000017111.1;transl_table=11 NC_008258.1 RefSeq gene 3070963 3071844 . - . ID=gene3307;Name=SFV_RS16630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16630;old_locus_tag=SFV_3004 NC_008258.1 Protein Homology CDS 3070963 3071844 . - 0 ID=cds3235;Parent=gene3307;Dbxref=Genbank:WP_001367514.1;Name=WP_001367514.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001367514.1;transl_table=11 NC_008258.1 RefSeq gene 3071961 3072665 . + . ID=gene3308;Name=SFV_RS16635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16635;old_locus_tag=SFV_3005 NC_008258.1 Protein Homology CDS 3071961 3072665 . + 0 ID=cds3236;Parent=gene3308;Dbxref=Genbank:WP_000997795.1;Name=WP_000997795.1;gbkey=CDS;product=YggS family pyridoxal phosphate enzyme;protein_id=WP_000997795.1;transl_table=11 NC_008258.1 RefSeq gene 3072683 3073249 . + . ID=gene3309;Name=SFV_RS16640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16640;old_locus_tag=SFV_3006 NC_008258.1 Protein Homology CDS 3072683 3073249 . + 0 ID=cds3237;Parent=gene3309;Dbxref=Genbank:WP_001094817.1;Name=WP_001094817.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001094817.1;transl_table=11 NC_008258.1 RefSeq gene 3073246 3073536 . + . ID=gene3310;Name=SFV_RS16645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16645;old_locus_tag=SFV_3007 NC_008258.1 Protein Homology CDS 3073246 3073536 . + 0 ID=cds3238;Parent=gene3310;Dbxref=Genbank:WP_001277222.1;Name=WP_001277222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001277222.1;transl_table=11 NC_008258.1 RefSeq gene 3073544 3074137 . + . ID=gene3311;Name=SFV_RS16650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16650;old_locus_tag=SFV_3008 NC_008258.1 Protein Homology CDS 3073544 3074137 . + 0 ID=cds3239;Parent=gene3311;Dbxref=Genbank:WP_001174735.1;Name=WP_001174735.1;Note=HAM1-like protein%3B Rec-dependent growth%3B RgdB%3B yggV%3B it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine;gbkey=CDS;product=non-canonical purine NTP pyrophosphatase;protein_id=WP_001174735.1;transl_table=11 NC_008258.1 RefSeq gene 3074130 3075266 . + . ID=gene3312;Name=SFV_RS16655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16655;old_locus_tag=SFV_3009 NC_008258.1 Protein Homology CDS 3074130 3075266 . + 0 ID=cds3240;Parent=gene3312;Dbxref=Genbank:WP_000239914.1;Name=WP_000239914.1;gbkey=CDS;product=HemN family oxidoreductase;protein_id=WP_000239914.1;transl_table=11 NC_008258.1 RefSeq gene 3075580 3076543 . + . ID=gene3313;Name=SFV_RS16660;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16660;pseudo=true NC_008258.1 Protein Homology CDS 3075580 3076543 . + 0 ID=cds3241;Parent=gene3313;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3076588 3077091 . + . ID=gene3314;Name=SFV_RS16665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16665;old_locus_tag=SFV_3012 NC_008258.1 Protein Homology CDS 3076588 3077091 . + 0 ID=cds3242;Parent=gene3314;Dbxref=Genbank:WP_000577036.1;Name=WP_000577036.1;gbkey=CDS;product=C4-dicarboxylate ABC transporter permease;protein_id=WP_000577036.1;transl_table=11 NC_008258.1 RefSeq gene 3077091 3078392 . + . ID=gene3315;Name=SFV_RS16670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16670;old_locus_tag=SFV_3013 NC_008258.1 Protein Homology CDS 3077091 3078392 . + 0 ID=cds3243;Parent=gene3315;Dbxref=Genbank:WP_000378934.1;Name=WP_000378934.1;gbkey=CDS;product=membrane protein;protein_id=WP_000378934.1;transl_table=11 NC_008258.1 RefSeq gene 3078448 3079455 . - . ID=gene3316;Name=SFV_RS16675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16675;old_locus_tag=SFV_3014 NC_008258.1 Protein Homology CDS 3078448 3079455 . - 0 ID=cds3244;Parent=gene3316;Dbxref=Genbank:WP_000745205.1;Name=WP_000745205.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000745205.1;transl_table=11 NC_008258.1 RefSeq gene 3079572 3080618 . - . ID=gene3317;Name=ansB;gbkey=Gene;gene=ansB;gene_biotype=protein_coding;locus_tag=SFV_RS16680;old_locus_tag=SFV_3015 NC_008258.1 Protein Homology CDS 3079572 3080618 . - 0 ID=cds3245;Parent=gene3317;Dbxref=Genbank:WP_000394125.1;Name=WP_000394125.1;Note=catalyzes the formation of aspartate from asparagine%2C periplasmic%3B regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis;gbkey=CDS;gene=ansB;product=L-asparaginase;protein_id=WP_000394125.1;transl_table=11 NC_008258.1 RefSeq gene 3080794 3081513 . - . ID=gene3318;Name=SFV_RS16685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16685;old_locus_tag=SFV_3016 NC_008258.1 Protein Homology CDS 3080794 3081513 . - 0 ID=cds3246;Parent=gene3318;Dbxref=Genbank:WP_000984792.1;Name=WP_000984792.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000984792.1;transl_table=11 NC_008258.1 RefSeq gene 3081534 3081674 . - . ID=gene3319;Name=SFV_RS16690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16690 NC_008258.1 Protein Homology CDS 3081534 3081674 . - 0 ID=cds3247;Parent=gene3319;Dbxref=Genbank:WP_005064025.1;Name=WP_005064025.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005064025.1;transl_table=11 NC_008258.1 RefSeq gene 3081697 3082023 . - . ID=gene3320;Name=SFV_RS16695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16695;old_locus_tag=SFV_3017 NC_008258.1 Protein Homology CDS 3081697 3082023 . - 0 ID=cds3248;Parent=gene3320;Dbxref=Genbank:WP_001107556.1;Name=WP_001107556.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001107556.1;transl_table=11 NC_008258.1 RefSeq gene 3082023 3082742 . - . ID=gene3321;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;gene_synonym=yggH;locus_tag=SFV_RS16700;old_locus_tag=SFV_3018 NC_008258.1 Protein Homology CDS 3082023 3082742 . - 0 ID=cds3249;Parent=gene3321;Dbxref=Genbank:WP_000786911.1;Name=WP_000786911.1;Note=tRNA (guanine-N(7)-)-methyltransferase%3B catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine;gbkey=CDS;gene=trmB;product=tRNA (guanine-N(7)-)-methyltransferase;protein_id=WP_000786911.1;transl_table=11 NC_008258.1 RefSeq gene 3082903 3083955 . + . ID=gene3322;Name=SFV_RS16705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16705;old_locus_tag=SFV_3019 NC_008258.1 Protein Homology CDS 3082903 3083955 . + 0 ID=cds3250;Parent=gene3322;Dbxref=Genbank:WP_004972828.1;Name=WP_004972828.1;gbkey=CDS;product=A/G-specific adenine glycosylase;protein_id=WP_004972828.1;transl_table=11 NC_008258.1 RefSeq gene 3083983 3084258 . + . ID=gene3323;Name=SFV_RS16710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16710;old_locus_tag=SFV_3020 NC_008258.1 Protein Homology CDS 3083983 3084258 . + 0 ID=cds3251;Parent=gene3323;Dbxref=Genbank:WP_000091700.1;Name=WP_000091700.1;Note=protects iron-sulfur proteins against oxidative damage;gbkey=CDS;product=Fe(2+)-trafficking protein;protein_id=WP_000091700.1;transl_table=11 NC_008258.1 RefSeq gene 3084323 3085402 . + . ID=gene3324;Name=mltC;gbkey=Gene;gene=mltC;gene_biotype=protein_coding;locus_tag=SFV_RS16715;old_locus_tag=SFV_3022 NC_008258.1 Protein Homology CDS 3084323 3085402 . + 0 ID=cds3252;Parent=gene3324;Dbxref=Genbank:WP_005064048.1;Name=WP_005064048.1;Note=Murein hydrolase C%3B membrane-bound%3B lytic%3B catalyzes the cleavage of the beta-1%2C4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues;gbkey=CDS;gene=mltC;product=murein transglycosylase;protein_id=WP_005064048.1;transl_table=11 NC_008258.1 RefSeq gene 3085604 3086860 . + . ID=gene3325;Name=SFV_RS16720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16720;old_locus_tag=SFV_3023 NC_008258.1 Protein Homology CDS 3085604 3086860 . + 0 ID=cds3253;Parent=gene3325;Dbxref=Genbank:WP_001049791.1;Name=WP_001049791.1;gbkey=CDS;product=nucleoside permease NupG;protein_id=WP_001049791.1;transl_table=11 NC_008258.1 RefSeq gene 3086909 3089044 . - . ID=gene3326;Name=SFV_RS16725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16725;old_locus_tag=SFV_3024 NC_008258.1 Protein Homology CDS 3086909 3089044 . - 0 ID=cds3254;Parent=gene3326;Dbxref=Genbank:WP_024260307.1;Name=WP_024260307.1;gbkey=CDS;product=ornithine decarboxylase;protein_id=WP_024260307.1;transl_table=11 NC_008258.1 RefSeq gene 3089442 3090149 . + . ID=gene3327;Name=SFV_RS16730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16730;old_locus_tag=SFV_3025 NC_008258.1 Protein Homology CDS 3089442 3090149 . + 0 ID=cds3255;Parent=gene3327;Dbxref=Genbank:WP_000234511.1;Name=WP_000234511.1;gbkey=CDS;product=transporter;protein_id=WP_000234511.1;transl_table=11 NC_008258.1 RefSeq gene 3090255 3090330 . + . ID=gene3328;Name=SFV_RS16735;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS16735;old_locus_tag=SFV_3026 NC_008258.1 tRNAscan-SE tRNA 3090255 3090330 . + . ID=rna72;Parent=gene3328;anticodon=(pos:3090288..3090290);gbkey=tRNA;product=tRNA-Phe NC_008258.1 tRNAscan-SE exon 3090255 3090330 . + . ID=id507;Parent=rna72;anticodon=(pos:3090288..3090290);gbkey=tRNA;product=tRNA-Phe NC_008258.1 RefSeq gene 3090930 3091220 . + . ID=gene3329;Name=SFV_RS16740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16740;old_locus_tag=SFV_3027 NC_008258.1 Protein Homology CDS 3090930 3091220 . + 0 ID=cds3256;Parent=gene3329;Dbxref=Genbank:WP_000340141.1;Name=WP_000340141.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000340141.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3091335 3092117 . + . ID=id508;gbkey=repeat_region NC_008258.1 RefSeq region 3091344 3092111 . - . ID=id509;gbkey=mobile_element NC_008258.1 RefSeq gene 3091359 3091862 . - . ID=gene3330;Name=SFV_RS16745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16745;old_locus_tag=SFV_3028 NC_008258.1 Protein Homology CDS 3091359 3091862 . - 0 ID=cds3257;Parent=gene3330;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 3093450 3095045 . - . ID=gene3331;Name=SFV_RS16750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16750;old_locus_tag=SFV_3030 NC_008258.1 Protein Homology CDS 3093450 3095045 . - 0 ID=cds3258;Parent=gene3331;Dbxref=Genbank:WP_000259316.1;Name=WP_000259316.1;gbkey=CDS;product=glycolate permease glcA;protein_id=WP_000259316.1;transl_table=11 NC_008258.1 RefSeq gene 3095400 3097571 . - . ID=gene3332;Name=SFV_RS16755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16755;old_locus_tag=SFV_3031 NC_008258.1 Protein Homology CDS 3095400 3097571 . - 0 ID=cds3259;Parent=gene3332;Dbxref=Genbank:WP_000084122.1;Name=WP_000084122.1;gbkey=CDS;product=malate synthase G;protein_id=WP_000084122.1;transl_table=11 NC_008258.1 RefSeq gene 3097593 3097997 . - . ID=gene3333;Name=SFV_RS16760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16760;old_locus_tag=SFV_3032 NC_008258.1 Protein Homology CDS 3097593 3097997 . - 0 ID=cds3260;Parent=gene3333;Dbxref=Genbank:WP_000853256.1;Name=WP_000853256.1;gbkey=CDS;product=protein GlcG;protein_id=WP_000853256.1;transl_table=11 NC_008258.1 RefSeq gene 3098002 3099221 . - . ID=gene3334;Name=glcF;gbkey=Gene;gene=glcF;gene_biotype=pseudogene;locus_tag=SFV_RS16765;pseudo=true NC_008258.1 Protein Homology CDS 3098002 3099221 . - 0 ID=cds3261;Parent=gene3334;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=glcF;product=glycolate oxidase iron-sulfur subunit;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3099232 3100284 . - . ID=gene3335;Name=glcE;gbkey=Gene;gene=glcE;gene_biotype=protein_coding;locus_tag=SFV_RS16770 NC_008258.1 Protein Homology CDS 3099232 3100284 . - 0 ID=cds3262;Parent=gene3335;Dbxref=Genbank:WP_000943080.1;Name=WP_000943080.1;gbkey=CDS;gene=glcE;product=FAD-binding protein;protein_id=WP_000943080.1;transl_table=11 NC_008258.1 RefSeq gene 3100284 3101306 . - . ID=gene3336;Name=SFV_RS16775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16775 NC_008258.1 Protein Homology CDS 3100284 3101306 . - 0 ID=cds3263;Parent=gene3336;Dbxref=Genbank:WP_000829567.1;Name=WP_000829567.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000829567.1;transl_table=11 NC_008258.1 RefSeq gene 3101379 3101783 . - . ID=gene3337;Name=SFV_RS16780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16780 NC_008258.1 Protein Homology CDS 3101379 3101783 . - 0 ID=cds3264;Parent=gene3337;Dbxref=Genbank:WP_000026134.1;Name=WP_000026134.1;gbkey=CDS;product=glycolate oxidase;protein_id=WP_000026134.1;transl_table=11 NC_008258.1 RefSeq gene 3102034 3102811 . + . ID=gene3338;Name=SFV_RS16785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16785;old_locus_tag=SFV_3035;pseudo=true NC_008258.1 Protein Homology CDS 3102034 3102811 . + 0 ID=cds3265;Parent=gene3338;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3102935 3104076 . - . ID=gene3339;Name=SFV_RS16790;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16790;pseudo=true NC_008258.1 Protein Homology CDS 3102935 3104076 . - 0 ID=cds3266;Parent=gene3339;exception=annotated by transcript or proteomic data;gbkey=CDS;product=DNA-binding protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3104359 3105131 . + . ID=id510;gbkey=repeat_region NC_008258.1 RefSeq region 3104362 3105129 . + . ID=id511;gbkey=mobile_element NC_008258.1 RefSeq gene 3104611 3105114 . + . ID=gene3340;Name=SFV_RS16795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16795;old_locus_tag=SFV_3039 NC_008258.1 Protein Homology CDS 3104611 3105114 . + 0 ID=cds3267;Parent=gene3340;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 3105125 3105394 . - . ID=gene3341;Name=SFV_RS16800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16800 NC_008258.1 Protein Homology CDS 3105125 3105394 . - 0 ID=cds3268;Parent=gene3341;Dbxref=Genbank:WP_024260308.1;Name=WP_024260308.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260308.1;transl_table=11 NC_008258.1 RefSeq gene 3105688 3107547 . - . ID=gene3342;Name=SFV_RS16805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16805;old_locus_tag=SFV_3041 NC_008258.1 Protein Homology CDS 3105688 3107547 . - 0 ID=cds3269;Parent=gene3342;Dbxref=Genbank:WP_001297309.1;Name=WP_001297309.1;Note=catalyzes the formation of glutathionylspermidine from glutathione and spermidine%3B also catalyzes the reverse reaction;gbkey=CDS;product=bifunctional glutathionylspermidine synthetase/amidase;protein_id=WP_001297309.1;transl_table=11 NC_008258.1 RefSeq gene 3107752 3108618 . + . ID=gene3343;Name=SFV_RS16810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16810;old_locus_tag=SFV_3042 NC_008258.1 Protein Homology CDS 3107752 3108618 . + 0 ID=cds3270;Parent=gene3343;Dbxref=Genbank:WP_005051894.1;Name=WP_005051894.1;Note=YghU%3B B2989%3B one of eight putative glutathione transferase proteins from E. coli;gbkey=CDS;product=S-transferase;protein_id=WP_005051894.1;transl_table=11 NC_008258.1 RefSeq gene 3108741 3108989 . - . ID=gene3344;Name=SFV_RS16815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16815;old_locus_tag=SFV_3043 NC_008258.1 Protein Homology CDS 3108741 3108989 . - 0 ID=cds3271;Parent=gene3344;Dbxref=Genbank:WP_000334896.1;Name=WP_000334896.1;gbkey=CDS;product=hydrogenase-2 operon protein HybG;protein_id=WP_000334896.1;transl_table=11 NC_008258.1 RefSeq gene 3109123 3109464 . - . ID=gene3345;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=SFV_RS16820;old_locus_tag=SFV_3044 NC_008258.1 Protein Homology CDS 3109123 3109464 . - 0 ID=cds3272;Parent=gene3345;Dbxref=Genbank:WP_000544953.1;Name=WP_000544953.1;Note=plays a role in hydrogenase nickel cofactor insertion;gbkey=CDS;gene=hypA;product=hydrogenase nickel incorporation protein;protein_id=WP_000544953.1;transl_table=11 NC_008258.1 RefSeq gene 3109457 3109945 . - . ID=gene3346;Name=SFV_RS16825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16825;old_locus_tag=SFV_3045 NC_008258.1 Protein Homology CDS 3109457 3109945 . - 0 ID=cds3273;Parent=gene3346;Dbxref=Genbank:WP_000134012.1;Name=WP_000134012.1;gbkey=CDS;product=hydrogenase;protein_id=WP_000134012.1;transl_table=11 NC_008258.1 RefSeq gene 3109938 3110432 . - . ID=gene3347;Name=hybD;gbkey=Gene;gene=hybD;gene_biotype=protein_coding;locus_tag=SFV_RS16830;old_locus_tag=SFV_3046 NC_008258.1 Protein Homology CDS 3109938 3110432 . - 0 ID=cds3274;Parent=gene3347;Dbxref=Genbank:WP_001221946.1;Name=WP_001221946.1;Note=protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC);gbkey=CDS;gene=hybD;product=hydrogenase 2 maturation endopeptidase;protein_id=WP_001221946.1;transl_table=11 NC_008258.1 RefSeq gene 3110432 3112135 . - . ID=gene3348;Name=SFV_RS16835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16835;old_locus_tag=SFV_3047 NC_008258.1 Protein Homology CDS 3110432 3112135 . - 0 ID=cds3275;Parent=gene3348;Dbxref=Genbank:WP_000083082.1;Name=WP_000083082.1;Note=involved in hydrogen uptake;gbkey=CDS;product=hydrogenase 2 large subunit;protein_id=WP_000083082.1;transl_table=11 NC_008258.1 RefSeq gene 3112132 3113310 . - . ID=gene3349;Name=SFV_RS16840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16840;old_locus_tag=SFV_3048 NC_008258.1 Protein Homology CDS 3112132 3113310 . - 0 ID=cds3276;Parent=gene3349;Dbxref=Genbank:WP_000017699.1;Name=WP_000017699.1;Note=HybB%3B cytochrome b subunit of the hydrogenase 2 enzyme%2C composed of HybA%2C B%2C C%2C and O subunits;gbkey=CDS;product=hydrogenase;protein_id=WP_000017699.1;transl_table=11 NC_008258.1 RefSeq gene 3113300 3114286 . - . ID=gene3350;Name=SFV_RS16845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16845;old_locus_tag=SFV_3049 NC_008258.1 Protein Homology CDS 3113300 3114286 . - 0 ID=cds3277;Parent=gene3350;Dbxref=Genbank:WP_001081870.1;Name=WP_001081870.1;Note=Fe-S ferrodoxin type component%3B participates in the periplasmic electron-transferring activity of hydrogenase 2;gbkey=CDS;product=hydrogenase-2 operon protein HybA;protein_id=WP_001081870.1;transl_table=11 NC_008258.1 RefSeq gene 3114289 3115407 . - . ID=gene3351;Name=SFV_RS16850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16850;old_locus_tag=SFV_3050 NC_008258.1 Protein Homology CDS 3114289 3115407 . - 0 ID=cds3278;Parent=gene3351;Dbxref=Genbank:WP_000145413.1;Name=WP_000145413.1;Note=involved in hydrogen uptake;gbkey=CDS;product=hydrogenase 2 small subunit;protein_id=WP_000145413.1;transl_table=11 NC_008258.1 RefSeq gene 3115414 3115599 . - . ID=gene3352;Name=SFV_RS16855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16855 NC_008258.1 Protein Homology CDS 3115414 3115599 . - 0 ID=cds3279;Parent=gene3352;Dbxref=Genbank:WP_005051896.1;Name=WP_005051896.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051896.1;transl_table=11 NC_008258.1 RefSeq gene 3115596 3115883 . - . ID=gene3353;Name=SFV_RS16860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16860;old_locus_tag=SFV_3051 NC_008258.1 Protein Homology CDS 3115596 3115883 . - 0 ID=cds3280;Parent=gene3353;Dbxref=Genbank:WP_001059136.1;Name=WP_001059136.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001059136.1;transl_table=11 NC_008258.1 RefSeq gene 3116002 3116889 . - . ID=gene3354;Name=SFV_RS16865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16865;old_locus_tag=SFV_3052 NC_008258.1 Protein Homology CDS 3116002 3116889 . - 0 ID=cds3281;Parent=gene3354;Dbxref=Genbank:WP_005051897.1;Name=WP_005051897.1;gbkey=CDS;product=dienelactone hydrolase;protein_id=WP_005051897.1;transl_table=11 NC_008258.1 RefSeq gene 3117046 3118086 . + . ID=gene3355;Name=SFV_RS16870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16870;old_locus_tag=SFV_3053 NC_008258.1 Protein Homology CDS 3117046 3118086 . + 0 ID=cds3282;Parent=gene3355;Dbxref=Genbank:WP_000262150.1;Name=WP_000262150.1;gbkey=CDS;product=glyceraldehyde 3-phosphate reductase;protein_id=WP_000262150.1;transl_table=11 NC_008258.1 RefSeq gene 3118126 3118620 . - . ID=gene3356;Name=SFV_RS16875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16875;old_locus_tag=SFV_3054 NC_008258.1 Protein Homology CDS 3118126 3118620 . - 0 ID=cds3283;Parent=gene3356;Dbxref=Genbank:WP_005051898.1;Name=WP_005051898.1;gbkey=CDS;product=membrane protein;protein_id=WP_005051898.1;transl_table=11 NC_008258.1 RefSeq gene 3118811 3119695 . + . ID=gene3357;Name=SFV_RS16880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16880;old_locus_tag=SFV_3055 NC_008258.1 Protein Homology CDS 3118811 3119695 . + 0 ID=cds3284;Parent=gene3357;Dbxref=Genbank:WP_000018747.1;Name=WP_000018747.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000018747.1;transl_table=11 NC_008258.1 RefSeq gene 3119967 3120392 . - . ID=gene3358;Name=SFV_RS16885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16885;old_locus_tag=SFV_3056 NC_008258.1 Protein Homology CDS 3119967 3120392 . - 0 ID=cds3285;Parent=gene3358;Dbxref=Genbank:WP_001240712.1;Name=WP_001240712.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell;gbkey=CDS;product=biopolymer transporter ExbD;protein_id=WP_001240712.1;transl_table=11 NC_008258.1 RefSeq gene 3120399 3121133 . - . ID=gene3359;Name=SFV_RS16890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16890;old_locus_tag=SFV_3057 NC_008258.1 Protein Homology CDS 3120399 3121133 . - 0 ID=cds3286;Parent=gene3359;Dbxref=Genbank:WP_000527844.1;Name=WP_000527844.1;Note=membrane spanning protein in TonB-ExbB-ExbD complex%3B involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell;gbkey=CDS;product=biopolymer transporter ExbB;protein_id=WP_000527844.1;transl_table=11 NC_008258.1 RefSeq gene 3121126 3121263 . - . ID=gene3360;Name=SFV_RS16895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16895 NC_008258.1 Protein Homology CDS 3121126 3121263 . - 0 ID=cds3287;Parent=gene3360;Dbxref=Genbank:WP_024167679.1;Name=WP_024167679.1;gbkey=CDS;product=membrane protein;protein_id=WP_024167679.1;transl_table=11 NC_008258.1 RefSeq gene 3121385 3122572 . + . ID=gene3361;Name=SFV_RS16900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16900;old_locus_tag=SFV_3058 NC_008258.1 Protein Homology CDS 3121385 3122572 . + 0 ID=cds3288;Parent=gene3361;Dbxref=Genbank:WP_001302355.1;Name=WP_001302355.1;Note=catalyzes the formation of L-homocysteine from cystathionine;gbkey=CDS;product=cystathionine beta-lyase;protein_id=WP_001302355.1;transl_table=11 NC_008258.1 RefSeq gene 3122712 3123371 . + . ID=gene3362;Name=SFV_RS16905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16905;old_locus_tag=SFV_3059 NC_008258.1 Protein Homology CDS 3122712 3123371 . + 0 ID=cds3289;Parent=gene3362;Dbxref=Genbank:WP_000268419.1;Name=WP_000268419.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000268419.1;transl_table=11 NC_008258.1 RefSeq gene 3123411 3124309 . - . ID=gene3363;Name=SFV_RS16910;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16910;pseudo=true NC_008258.1 Protein Homology CDS 3123411 3124309 . - 0 ID=cds3290;Parent=gene3363;exception=annotated by transcript or proteomic data;gbkey=CDS;product=AraC family transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3124306 3124452 . - . ID=gene3364;Name=SFV_RS16915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16915 NC_008258.1 Protein Homology CDS 3124306 3124452 . - 0 ID=cds3291;Parent=gene3364;Dbxref=Genbank:WP_001298764.1;Name=WP_001298764.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001298764.1;transl_table=11 NC_008258.1 RefSeq gene 3124503 3125666 . + . ID=gene3365;Name=SFV_RS16920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16920;old_locus_tag=SFV_3060 NC_008258.1 Protein Homology CDS 3124503 3125666 . + 0 ID=cds3292;Parent=gene3365;Dbxref=Genbank:WP_001058807.1;Name=WP_001058807.1;gbkey=CDS;product=aldehyde reductase;protein_id=WP_001058807.1;transl_table=11 NC_008258.1 RefSeq gene 3125771 3126598 . + . ID=gene3366;Name=dkgA;gbkey=Gene;gene=dkgA;gene_biotype=protein_coding;locus_tag=SFV_RS16925;old_locus_tag=SFV_3062 NC_008258.1 Protein Homology CDS 3125771 3126598 . + 0 ID=cds3293;Parent=gene3366;Dbxref=Genbank:WP_000013147.1;Name=WP_000013147.1;Note=methylglyoxal reductase/beta-keto ester reductase%3B catalyzes the reduction of 2%2C5-diketo-D-gluconic acid to 2-keto-L-gulonic acid%3B also catalyzes the reduction of methylglyoxal%2C ethyl-2-methylacetoacetate and ethyl-acetoacetate;gbkey=CDS;gene=dkgA;product=2%2C5-diketo-D-gluconic acid reductase;protein_id=WP_000013147.1;transl_table=11 NC_008258.1 RefSeq gene 3126798 3127724 . + . ID=gene3367;Name=SFV_RS16930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16930;old_locus_tag=SFV_3063 NC_008258.1 Protein Homology CDS 3126798 3127724 . + 0 ID=cds3294;Parent=gene3367;Dbxref=Genbank:WP_000691642.1;Name=WP_000691642.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000691642.1;transl_table=11 NC_008258.1 RefSeq gene 3127775 3128032 . + . ID=gene3368;Name=SFV_RS16935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16935;old_locus_tag=SFV_3064 NC_008258.1 Protein Homology CDS 3127775 3128032 . + 0 ID=cds3295;Parent=gene3368;Dbxref=Genbank:WP_000848528.1;Name=WP_000848528.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000848528.1;transl_table=11 NC_008258.1 RefSeq gene 3128075 3130254 . - . ID=gene3369;Name=SFV_RS16940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS16940;pseudo=true NC_008258.1 Protein Homology CDS 3128075 3130254 . - 0 ID=cds3296;Parent=gene3369;exception=annotated by transcript or proteomic data;gbkey=CDS;product=YgiQ family radical SAM protein;pseudo=true;transl_except=(pos:complement(3129414..3129416)%2Caa:Other),(pos:complement(3128469..3128471)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3130365 3131777 . - . ID=gene3370;Name=SFV_RS16945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16945;old_locus_tag=SFV_3066 NC_008258.1 Protein Homology CDS 3130365 3131777 . - 0 ID=cds3297;Parent=gene3370;Dbxref=Genbank:WP_000059395.1;Name=WP_000059395.1;Note=septal ring component that protects the divisome from stress;gbkey=CDS;product=cell division protein FtsI;protein_id=WP_000059395.1;transl_table=11 NC_008258.1 RefSeq gene 3131852 3132589 . - . ID=gene3371;Name=SFV_RS16950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16950;old_locus_tag=SFV_3067 NC_008258.1 Protein Homology CDS 3131852 3132589 . - 0 ID=cds3298;Parent=gene3371;Dbxref=Genbank:WP_000965712.1;Name=WP_000965712.1;Note=catalyzes the formation of 1%2C2-diacyl-sn-glycerol 3-phosphate from 1-acyl-sn-glycerol 3-phosphate using either acyl-CoA or acyl-ACP;gbkey=CDS;product=1-acyl-sn-glycerol-3-phosphate acyltransferase;protein_id=WP_000965712.1;transl_table=11 NC_008258.1 RefSeq gene 3132823 3135081 . - . ID=gene3372;Name=SFV_RS16955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16955;old_locus_tag=SFV_3068 NC_008258.1 Protein Homology CDS 3132823 3135081 . - 0 ID=cds3299;Parent=gene3372;Dbxref=Genbank:WP_001281881.1;Name=WP_001281881.1;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;gbkey=CDS;product=DNA topoisomerase 4 subunit A;protein_id=WP_001281881.1;transl_table=11 NC_008258.1 RefSeq gene 3135409 3135627 . - . ID=gene3373;Name=SFV_RS16960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16960 NC_008258.1 Protein Homology CDS 3135409 3135627 . - 0 ID=cds3300;Parent=gene3373;Dbxref=Genbank:WP_000527661.1;Name=WP_000527661.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000527661.1;transl_table=11 NC_008258.1 RefSeq gene 3135627 3136109 . - . ID=gene3374;Name=SFV_RS16965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16965;old_locus_tag=SFV_3069 NC_008258.1 Protein Homology CDS 3135627 3136109 . - 0 ID=cds3301;Parent=gene3374;Dbxref=Genbank:WP_000183501.1;Name=WP_000183501.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_000183501.1;transl_table=11 NC_008258.1 RefSeq gene 3136162 3136554 . - . ID=gene3375;Name=SFV_RS16970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16970;old_locus_tag=SFV_3070 NC_008258.1 Protein Homology CDS 3136162 3136554 . - 0 ID=cds3302;Parent=gene3375;Dbxref=Genbank:WP_000712658.1;Name=WP_000712658.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000712658.1;transl_table=11 NC_008258.1 RefSeq gene 3136706 3137365 . + . ID=gene3376;Name=SFV_RS16975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16975;old_locus_tag=SFV_3071 NC_008258.1 Protein Homology CDS 3136706 3137365 . + 0 ID=cds3303;Parent=gene3376;Dbxref=Genbank:WP_001221509.1;Name=WP_001221509.1;Note=response regulator in two-component regulatory system with QseC%3B regulates FlhCD which is the master regulator for flagella and motility genes;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001221509.1;transl_table=11 NC_008258.1 RefSeq gene 3137362 3138711 . + . ID=gene3377;Name=SFV_RS16980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16980;old_locus_tag=SFV_3072 NC_008258.1 Protein Homology CDS 3137362 3138711 . + 0 ID=cds3304;Parent=gene3377;Dbxref=Genbank:WP_000673369.1;Name=WP_000673369.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_000673369.1;transl_table=11 NC_008258.1 RefSeq gene 3138757 3139089 . - . ID=gene3378;Name=SFV_RS16985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16985 NC_008258.1 Protein Homology CDS 3138757 3139089 . - 0 ID=cds3305;Parent=gene3378;Dbxref=Genbank:WP_000917682.1;Name=WP_000917682.1;gbkey=CDS;product=membrane protein;protein_id=WP_000917682.1;transl_table=11 NC_008258.1 RefSeq gene 3139408 3139989 . + . ID=gene3379;Name=SFV_RS16990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16990;old_locus_tag=SFV_3073 NC_008258.1 Protein Homology CDS 3139408 3139989 . + 0 ID=cds3306;Parent=gene3379;Dbxref=Genbank:WP_000065435.1;Name=WP_000065435.1;Note=involved in drug resistance;gbkey=CDS;product=modulator of drug activity B;protein_id=WP_000065435.1;transl_table=11 NC_008258.1 RefSeq gene 3140020 3140334 . + . ID=gene3380;Name=SFV_RS16995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS16995;old_locus_tag=SFV_3074 NC_008258.1 Protein Homology CDS 3140020 3140334 . + 0 ID=cds3307;Parent=gene3380;Dbxref=Genbank:WP_000958598.1;Name=WP_000958598.1;Note=catalyzes the oxidation of menadiol to menadione;gbkey=CDS;product=quinol monooxygenase YgiN;protein_id=WP_000958598.1;transl_table=11 NC_008258.1 RefSeq gene 3140382 3142274 . - . ID=gene3381;Name=SFV_RS17000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17000;old_locus_tag=SFV_3075 NC_008258.1 Protein Homology CDS 3140382 3142274 . - 0 ID=cds3308;Parent=gene3381;Dbxref=Genbank:WP_000195322.1;Name=WP_000195322.1;Note=decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling;gbkey=CDS;product=DNA topoisomerase IV subunit B;protein_id=WP_000195322.1;transl_table=11 NC_008258.1 RefSeq gene 3142303 3142884 . - . ID=gene3382;Name=SFV_RS17005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17005;old_locus_tag=SFV_3076 NC_008258.1 Protein Homology CDS 3142303 3142884 . - 0 ID=cds3309;Parent=gene3382;Dbxref=Genbank:WP_000105733.1;Name=WP_000105733.1;Note=Displays esterase activity toward palmitoyl-CoA and pNP-butyrate;gbkey=CDS;product=esterase;protein_id=WP_000105733.1;transl_table=11 NC_008258.1 RefSeq gene 3142884 3143711 . - . ID=gene3383;Name=SFV_RS17010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17010;old_locus_tag=SFV_3077 NC_008258.1 Protein Homology CDS 3142884 3143711 . - 0 ID=cds3310;Parent=gene3383;Dbxref=Genbank:WP_000444728.1;Name=WP_000444728.1;gbkey=CDS;product=3'%2C5'-cyclic-nucleotide phosphodiesterase;protein_id=WP_000444728.1;transl_table=11 NC_008258.1 RefSeq gene 3143736 3144158 . - . ID=gene3384;Name=SFV_RS17015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17015;old_locus_tag=SFV_3078 NC_008258.1 Protein Homology CDS 3143736 3144158 . - 0 ID=cds3311;Parent=gene3384;Dbxref=Genbank:WP_000833393.1;Name=WP_000833393.1;gbkey=CDS;product=dehydrogenase;protein_id=WP_000833393.1;transl_table=11 NC_008258.1 RefSeq gene 3144159 3144788 . - . ID=gene3385;Name=nudF;gbkey=Gene;gene=nudF;gene_biotype=protein_coding;locus_tag=SFV_RS17020;old_locus_tag=SFV_3079 NC_008258.1 Protein Homology CDS 3144159 3144788 . - 0 ID=cds3312;Parent=gene3385;Dbxref=Genbank:WP_000917119.1;Name=WP_000917119.1;Note=ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose;gbkey=CDS;gene=nudF;product=ADP-ribose pyrophosphatase;protein_id=WP_000917119.1;transl_table=11 NC_008258.1 RefSeq gene 3144993 3146474 . + . ID=gene3386;Name=tolC;gbkey=Gene;gene=tolC;gene_biotype=protein_coding;locus_tag=SFV_RS17025;old_locus_tag=SFV_3080 NC_008258.1 Protein Homology CDS 3144993 3146474 . + 0 ID=cds3313;Parent=gene3386;Dbxref=Genbank:WP_000735285.1;Name=WP_000735285.1;Note=trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules%3B functions with a number of efflux systems in the inner membrane to transport molecules out of the cell;gbkey=CDS;gene=tolC;product=outer membrane channel protein;protein_id=WP_000735285.1;transl_table=11 NC_008258.1 RefSeq gene 3146474 3146734 . + . ID=gene3387;Name=SFV_RS17030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17030 NC_008258.1 Protein Homology CDS 3146474 3146734 . + 0 ID=cds3314;Parent=gene3387;Dbxref=Genbank:WP_001701108.1;Name=WP_001701108.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001701108.1;transl_table=11 NC_008258.1 RefSeq gene 3146622 3147293 . + . ID=gene3388;Name=SFV_RS17035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17035;old_locus_tag=SFV_3081 NC_008258.1 Protein Homology CDS 3146622 3147293 . + 0 ID=cds3315;Parent=gene3388;Dbxref=Genbank:WP_000831543.1;Name=WP_000831543.1;gbkey=CDS;product=membrane protein;protein_id=WP_000831543.1;transl_table=11 NC_008258.1 RefSeq gene 3147299 3148459 . + . ID=gene3389;Name=SFV_RS17040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17040;old_locus_tag=SFV_3082 NC_008258.1 Protein Homology CDS 3147299 3148459 . + 0 ID=cds3316;Parent=gene3389;Dbxref=Genbank:WP_000442868.1;Name=WP_000442868.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000442868.1;transl_table=11 NC_008258.1 RefSeq gene 3148497 3149285 . - . ID=gene3390;Name=SFV_RS17045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17045;old_locus_tag=SFV_3083 NC_008258.1 Protein Homology CDS 3148497 3149285 . - 0 ID=cds3317;Parent=gene3390;Dbxref=Genbank:WP_005051905.1;Name=WP_005051905.1;Note=seems to be involved in biofilm formation%3B in asymptomatic bacteriuria E. coli strains 83972 and VR50%2C the ygiD gene is upregulated during biofilm formation in urine;gbkey=CDS;product=LigB family dioxygenase;protein_id=WP_005051905.1;transl_table=11 NC_008258.1 RefSeq gene 3149428 3150201 . + . ID=gene3391;Name=SFV_RS17050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17050;old_locus_tag=SFV_3084 NC_008258.1 Protein Homology CDS 3149428 3150201 . + 0 ID=cds3318;Parent=gene3391;Dbxref=Genbank:WP_005051906.1;Name=WP_005051906.1;gbkey=CDS;product=zinc transporter ZupT;protein_id=WP_005051906.1;transl_table=11 NC_008258.1 RefSeq gene 3150259 3150429 . - . ID=gene3392;Name=SFV_RS17055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17055 NC_008258.1 Protein Homology CDS 3150259 3150429 . - 0 ID=cds3319;Parent=gene3392;Dbxref=Genbank:WP_000469266.1;Name=WP_000469266.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000469266.1;transl_table=11 NC_008258.1 RefSeq gene 3150690 3151343 . - . ID=gene3393;Name=ribB;gbkey=Gene;gene=ribB;gene_biotype=protein_coding;locus_tag=SFV_RS17060;old_locus_tag=SFV_3085 NC_008258.1 Protein Homology CDS 3150690 3151343 . - 0 ID=cds3320;Parent=gene3393;Dbxref=Genbank:WP_001076997.1;Name=WP_001076997.1;Note=DHBP synthase%3B functions during riboflavin biosynthesis;gbkey=CDS;gene=ribB;product=3%2C4-dihydroxy-2-butanone 4-phosphate synthase;protein_id=WP_001076997.1;transl_table=11 NC_008258.1 RefSeq gene 3151717 3152007 . + . ID=gene3394;Name=SFV_RS17065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17065;old_locus_tag=SFV_3086 NC_008258.1 Protein Homology CDS 3151717 3152007 . + 0 ID=cds3321;Parent=gene3394;Dbxref=Genbank:WP_001295626.1;Name=WP_001295626.1;gbkey=CDS;product=BMFP family fusogenic protein;protein_id=WP_001295626.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3152171 3154204 . + . ID=id512;gbkey=repeat_region NC_008258.1 RefSeq region 3152172 3153432 . + . ID=id513;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3152263 3152628 . + . ID=gene3395;Name=SFV_RS17070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17070;old_locus_tag=SFV_3087 NC_008258.1 Protein Homology CDS 3152263 3152628 . + 0 ID=cds3322;Parent=gene3395;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 3152586 3153437 . + . ID=gene3396;Name=SFV_RS17075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17075;old_locus_tag=SFV_3088 NC_008258.1 Protein Homology CDS 3152586 3153437 . + 0 ID=cds3323;Parent=gene3396;Dbxref=Genbank:WP_011587269.1;Name=WP_011587269.1;gbkey=CDS;product=integrase;protein_id=WP_011587269.1;transl_table=11 NC_008258.1 RefSeq region 3153433 3154200 . + . ID=id514;gbkey=mobile_element NC_008258.1 RefSeq gene 3153682 3154185 . + . ID=gene3397;Name=SFV_RS17080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17080;old_locus_tag=SFV_3090 NC_008258.1 Protein Homology CDS 3153682 3154185 . + 0 ID=cds3324;Parent=gene3397;Dbxref=Genbank:WP_005050879.1;Name=WP_005050879.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005050879.1;transl_table=11 NC_008258.1 RefSeq gene 3154201 3155127 . + . ID=gene3398;Name=SFV_RS17085;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17085;partial=true;pseudo=true;start_range=.,3154201 NC_008258.1 Protein Homology CDS 3154201 3155127 . + 0 ID=cds3325;Parent=gene3398;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3154201;transl_table=11 NC_008258.1 RefSeq repeat_region 3155145 3156239 . + . ID=id515;gbkey=repeat_region NC_008258.1 RefSeq gene 3155227 3155478 . + . ID=gene3399;Name=SFV_RS17090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17090 NC_008258.1 Protein Homology CDS 3155227 3155478 . + 0 ID=cds3326;Parent=gene3399;Dbxref=Genbank:WP_001406537.1;Name=WP_001406537.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001406537.1;transl_table=11 NC_008258.1 RefSeq gene 3155837 3156229 . + . ID=gene3400;Name=SFV_RS17095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17095 NC_008258.1 Protein Homology CDS 3155837 3156229 . + 0 ID=cds3327;Parent=gene3400;Dbxref=Genbank:WP_024259304.1;Name=WP_024259304.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024259304.1;transl_table=11 NC_008258.1 RefSeq gene 3156296 3157729 . - . ID=gene3401;Name=SFV_RS17100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17100;old_locus_tag=SFV_3092 NC_008258.1 Protein Homology CDS 3156296 3157729 . - 0 ID=cds3328;Parent=gene3401;Dbxref=Genbank:WP_000869173.1;Name=WP_000869173.1;Note=catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D%2CD-heptose-1%2C7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D%2CD-heptose;gbkey=CDS;product=bifunctional protein HldE;protein_id=WP_000869173.1;transl_table=11 NC_008258.1 RefSeq gene 3157777 3160617 . - . ID=gene3402;Name=SFV_RS17105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17105;old_locus_tag=SFV_3093 NC_008258.1 Protein Homology CDS 3157777 3160617 . - 0 ID=cds3329;Parent=gene3402;Dbxref=Genbank:WP_005063950.1;Name=WP_005063950.1;Note=catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase%3B also catalyzes the reverse reaction - deadenylation%3B adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme;gbkey=CDS;product=glutamate--ammonia-ligase adenylyltransferase;protein_id=WP_005063950.1;transl_table=11 NC_008258.1 RefSeq gene 3160640 3161941 . - . ID=gene3403;Name=SFV_RS17110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17110;old_locus_tag=SFV_3094 NC_008258.1 Protein Homology CDS 3160640 3161941 . - 0 ID=cds3330;Parent=gene3403;Dbxref=Genbank:WP_000046320.1;Name=WP_000046320.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000046320.1;transl_table=11 NC_008258.1 RefSeq gene 3161958 3162143 . - . ID=gene3404;Name=SFV_RS17115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17115 NC_008258.1 Protein Homology CDS 3161958 3162143 . - 0 ID=cds3331;Parent=gene3404;Dbxref=Genbank:WP_001298386.1;Name=WP_001298386.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001298386.1;transl_table=11 NC_008258.1 RefSeq gene 3162183 3162803 . + . ID=gene3405;Name=SFV_RS17120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17120;old_locus_tag=SFV_3095 NC_008258.1 Protein Homology CDS 3162183 3162803 . + 0 ID=cds3332;Parent=gene3405;Dbxref=Genbank:WP_001125331.1;Name=WP_001125331.1;gbkey=CDS;product=signal transduction protein;protein_id=WP_001125331.1;transl_table=11 NC_008258.1 RefSeq gene 3162867 3164105 . + . ID=gene3406;Name=SFV_RS17125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17125;old_locus_tag=SFV_3096 NC_008258.1 Protein Homology CDS 3162867 3164105 . + 0 ID=cds3333;Parent=gene3406;Dbxref=Genbank:WP_000708527.1;Name=WP_000708527.1;gbkey=CDS;product=multifunctional CCA protein;protein_id=WP_000708527.1;transl_table=11 NC_008258.1 RefSeq gene 3164268 3165089 . - . ID=gene3407;Name=SFV_RS17130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17130;old_locus_tag=SFV_3097 NC_008258.1 Protein Homology CDS 3164268 3165089 . - 0 ID=cds3334;Parent=gene3407;Dbxref=Genbank:WP_001305111.1;Name=WP_001305111.1;Note=BacA%3B phosphatase activity in Escherichia coli not kinase%3B involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell;gbkey=CDS;product=undecaprenyl-diphosphatase;protein_id=WP_001305111.1;transl_table=11 NC_008258.1 RefSeq gene 3165180 3165548 . - . ID=gene3408;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=SFV_RS17135;old_locus_tag=SFV_3098 NC_008258.1 Protein Homology CDS 3165180 3165548 . - 0 ID=cds3335;Parent=gene3408;Dbxref=Genbank:WP_001295541.1;Name=WP_001295541.1;Note=catalyzes the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin;gbkey=CDS;gene=folB;product=dihydroneopterin aldolase;protein_id=WP_001295541.1;transl_table=11 NC_008258.1 RefSeq gene 3165653 3166270 . + . ID=gene3409;Name=SFV_RS17140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17140;old_locus_tag=SFV_3099 NC_008258.1 Protein Homology CDS 3165653 3166270 . + 0 ID=cds3336;Parent=gene3409;Dbxref=Genbank:WP_001272798.1;Name=WP_001272798.1;Note=involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis%3B functions with PlsX;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_001272798.1;transl_table=11 NC_008258.1 RefSeq gene 3166213 3167214 . - . ID=gene3410;Name=SFV_RS17145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17145;old_locus_tag=SFV_3100 NC_008258.1 Protein Homology CDS 3166213 3167214 . - 0 ID=cds3337;Parent=gene3410;Dbxref=Genbank:WP_005051916.1;Name=WP_005051916.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_005051916.1;transl_table=11 NC_008258.1 RefSeq gene 3167421 3168233 . + . ID=gene3411;Name=SFV_RS17150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17150;old_locus_tag=SFV_3101 NC_008258.1 Protein Homology CDS 3167421 3168233 . + 0 ID=cds3338;Parent=gene3411;Dbxref=Genbank:WP_005085750.1;Name=WP_005085750.1;Note=Involved in the tartrate degradation pathway;gbkey=CDS;product=L+-tartrate dehydratase subunit alpha;protein_id=WP_005085750.1;transl_table=11 NC_008258.1 RefSeq gene 3168261 3168866 . + . ID=gene3412;Name=SFV_RS17155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17155;old_locus_tag=SFV_3102 NC_008258.1 Protein Homology CDS 3168261 3168866 . + 0 ID=cds3339;Parent=gene3412;Dbxref=Genbank:WP_000722957.1;Name=WP_000722957.1;Note=Involved in the tartrate degradation pathway;gbkey=CDS;product=L+-tartrate dehydratase subunit beta;protein_id=WP_000722957.1;transl_table=11 NC_008258.1 RefSeq gene 3168914 3170377 . + . ID=gene3413;Name=SFV_RS17160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17160;old_locus_tag=SFV_3103 NC_008258.1 Protein Homology CDS 3168914 3170377 . + 0 ID=cds3340;Parent=gene3413;Dbxref=Genbank:WP_000804975.1;Name=WP_000804975.1;Note=involved in the transport of citrate into the cell along with the export of succinate out of the cell;gbkey=CDS;product=L-tartrate/succinate antiporter;protein_id=WP_000804975.1;transl_table=11 NC_008258.1 RefSeq gene 3170420 3171433 . - . ID=gene3414;Name=SFV_RS17165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17165;old_locus_tag=SFV_3104 NC_008258.1 Protein Homology CDS 3170420 3171433 . - 0 ID=cds3341;Parent=gene3414;Dbxref=Genbank:WP_001264365.1;Name=WP_001264365.1;Note=universal genome maintenance protein%3B Kae1/Qri7/OSGEP/YgjD family protein%3B in Archaea%2C some Kae1 are found as fusion proteins similar to two distinct proteins in yeast that are involved in the KEOPS complex%3B kinase associated endopeptidase 1 (Kae1) and a serine/threonine protein kinase (Bud32)%3B in Pyrococcus Kae1 has atypical AP endonuclease activity and inhibits the kinase activity of Bud32%3B the protein is essential in Escherichia coli and Bacillus subtilis;gbkey=CDS;product=tRNA N6-adenosine threonylcarbamoyltransferase;protein_id=WP_001264365.1;transl_table=11 NC_008258.1 RefSeq gene 3171671 3171886 . + . ID=gene3415;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=SFV_RS17170;old_locus_tag=SFV_3105 NC_008258.1 Protein Homology CDS 3171671 3171886 . + 0 ID=cds3342;Parent=gene3415;Dbxref=Genbank:WP_001144069.1;Name=WP_001144069.1;Note=a small basic protein that is one of the last in the subunit assembly%3B omission does not prevent assembly but the subunit is inactive%3B binds central domain of 16S rRNA;gbkey=CDS;gene=rpsU;product=30S ribosomal protein S21;protein_id=WP_001144069.1;transl_table=11 NC_008258.1 RefSeq gene 3171997 3173742 . + . ID=gene3416;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=SFV_RS17175;old_locus_tag=SFV_3106 NC_008258.1 Protein Homology CDS 3171997 3173742 . + 0 ID=cds3343;Parent=gene3416;Dbxref=Genbank:WP_000918821.1;Name=WP_000918821.1;Note=synthesizes RNA primers at the replication forks;gbkey=CDS;gene=dnaG;product=DNA primase;protein_id=WP_000918821.1;transl_table=11 NC_008258.1 RefSeq gene 3173937 3175778 . + . ID=gene3417;Name=SFV_RS17180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17180;old_locus_tag=SFV_3107 NC_008258.1 Protein Homology CDS 3173937 3175778 . + 0 ID=cds3344;Parent=gene3417;Dbxref=Genbank:WP_000437371.1;Name=WP_000437371.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B this is the primary sigma factor of bacteria;gbkey=CDS;product=RNA polymerase sigma factor RpoD;protein_id=WP_000437371.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3175845 3177292 . + . ID=id516;gbkey=repeat_region NC_008258.1 RefSeq region 3175849 3177276 . + . ID=id517;gbkey=mobile_element NC_008258.1 RefSeq gene 3175934 3177262 . + . ID=gene3418;Name=SFV_RS17185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17185;old_locus_tag=SFV_3108 NC_008258.1 Protein Homology CDS 3175934 3177262 . + 0 ID=cds3345;Parent=gene3418;Dbxref=Genbank:WP_000547291.1;Name=WP_000547291.1;gbkey=CDS;product=transposase;protein_id=WP_000547291.1;transl_table=11 NC_008258.1 RefSeq gene 3177294 3177800 . - . ID=gene3419;Name=SFV_RS17190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17190;old_locus_tag=SFV_3109 NC_008258.1 Protein Homology CDS 3177294 3177800 . - 0 ID=cds3346;Parent=gene3419;Dbxref=Genbank:WP_000228937.1;Name=WP_000228937.1;gbkey=CDS;product=G/U mismatch DNA glycosylase;protein_id=WP_000228937.1;transl_table=11 NC_008258.1 RefSeq gene 3177925 3178000 . + . ID=gene3420;Name=SFV_RS17195;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS17195;old_locus_tag=SFV_3110 NC_008258.1 tRNAscan-SE tRNA 3177925 3178000 . + . ID=rna73;Parent=gene3420;anticodon=(pos:3177958..3177960);gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 3177925 3178000 . + . ID=id518;Parent=rna73;anticodon=(pos:3177958..3177960);gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 3178054 3178799 . - . ID=gene3421;Name=SFV_RS17200;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17200;pseudo=true NC_008258.1 Protein Homology CDS 3178054 3178799 . - 0 ID=cds3347;Parent=gene3421;exception=annotated by transcript or proteomic data;gbkey=CDS;product=FMN reductase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3179076 3179699 . + . ID=gene3422;Name=SFV_RS17205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17205;old_locus_tag=SFV_3112 NC_008258.1 Protein Homology CDS 3179076 3179699 . + 0 ID=cds3348;Parent=gene3422;Dbxref=Genbank:WP_000018003.1;Name=WP_000018003.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000018003.1;transl_table=11 NC_008258.1 RefSeq gene 3179853 3181373 . - . ID=gene3423;Name=SFV_RS17210;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17210;pseudo=true NC_008258.1 Protein Homology CDS 3179853 3181373 . - 0 ID=cds3349;Parent=gene3423;gbkey=CDS;product=aerotaxis receptor Aer;pseudo=true;transl_except=(pos:complement(3180327..3180329)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3181791 3183170 . + . ID=gene3424;Name=SFV_RS17215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17215;old_locus_tag=SFV_3114 NC_008258.1 Protein Homology CDS 3181791 3183170 . + 0 ID=cds3350;Parent=gene3424;Dbxref=Genbank:WP_005051020.1;Name=WP_005051020.1;Note=catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate;gbkey=CDS;product=putrescine aminotransferase;protein_id=WP_005051020.1;transl_table=11 NC_008258.1 RefSeq gene 3183212 3183543 . - . ID=gene3425;Name=SFV_RS17220;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17220;pseudo=true NC_008258.1 Protein Homology CDS 3183212 3183543 . - 0 ID=cds3351;Parent=gene3425;exception=annotated by transcript or proteomic data;gbkey=CDS;product=methionyl-tRNA synthetase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3183763 3184746 . + . ID=gene3426;Name=SFV_RS17225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17225;old_locus_tag=SFV_3116 NC_008258.1 Protein Homology CDS 3183763 3184746 . + 0 ID=cds3352;Parent=gene3426;Dbxref=Genbank:WP_000212445.1;Name=WP_000212445.1;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_000212445.1;transl_table=11 NC_008258.1 RefSeq gene 3184930 3188016 . + . ID=gene3427;Name=ebgA;gbkey=Gene;gene=ebgA;gene_biotype=protein_coding;locus_tag=SFV_RS17230;old_locus_tag=SFV_3117 NC_008258.1 Protein Homology CDS 3184930 3188016 . + 0 ID=cds3353;Parent=gene3427;Dbxref=Genbank:WP_001082921.1;Name=WP_001082921.1;Note=in Escherichia coli this is the second beta-galactosidase system;gbkey=CDS;gene=ebgA;product=beta-D-galactosidase subunit alpha;protein_id=WP_001082921.1;transl_table=11 NC_008258.1 RefSeq gene 3188013 3188462 . + . ID=gene3428;Name=ebgC;gbkey=Gene;gene=ebgC;gene_biotype=protein_coding;locus_tag=SFV_RS17235;old_locus_tag=SFV_3118 NC_008258.1 Protein Homology CDS 3188013 3188462 . + 0 ID=cds3354;Parent=gene3428;Dbxref=Genbank:WP_001219967.1;Name=WP_001219967.1;Note=in Escherichia coli this is the second beta-galactosidase system;gbkey=CDS;gene=ebgC;product=beta-D-galactosidase subunit beta;protein_id=WP_001219967.1;transl_table=11 NC_008258.1 RefSeq gene 3188525 3189958 . + . ID=gene3429;Name=SFV_RS17240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17240;old_locus_tag=SFV_3119 NC_008258.1 Protein Homology CDS 3188525 3189958 . + 0 ID=cds3355;Parent=gene3429;Dbxref=Genbank:WP_001285461.1;Name=WP_001285461.1;gbkey=CDS;product=amino acid permease;protein_id=WP_001285461.1;transl_table=11 NC_008258.1 RefSeq gene 3190092 3191163 . + . ID=gene3430;Name=SFV_RS17245;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17245;pseudo=true NC_008258.1 Protein Homology CDS 3190092 3191163 . + 0 ID=cds3356;Parent=gene3430;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3190410..3190412%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3191180 3191476 . + . ID=gene3431;Name=SFV_RS17250;end_range=3191476,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17250;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3191180 3191476 . + 0 ID=cds3357;Parent=gene3431;end_range=3191476,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_except=(pos:3191360..3191362%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3191396 3193531 . + . ID=gene3432;Name=SFV_RS17255;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17255;pseudo=true NC_008258.1 Protein Homology CDS 3191396 3193531 . + 0 ID=cds3358;Parent=gene3432;gbkey=CDS;product=alpha-glucosidase;pseudo=true;transl_except=(pos:3192785..3192787%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3193757 3195775 . + . ID=gene3433;Name=SFV_RS17260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17260;old_locus_tag=SFV_3122 NC_008258.1 Protein Homology CDS 3193757 3195775 . + 0 ID=cds3359;Parent=gene3433;Dbxref=Genbank:WP_000121485.1;Name=WP_000121485.1;gbkey=CDS;product=2%2C4-dienoyl-CoA reductase;protein_id=WP_000121485.1;transl_table=11 NC_008258.1 RefSeq gene 3195820 3196236 . - . ID=gene3434;Name=SFV_RS17265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17265;old_locus_tag=SFV_3123 NC_008258.1 Protein Homology CDS 3195820 3196236 . - 0 ID=cds3360;Parent=gene3434;Dbxref=Genbank:WP_000560266.1;Name=WP_000560266.1;gbkey=CDS;product=antitoxin HigA;protein_id=WP_000560266.1;transl_table=11 NC_008258.1 RefSeq gene 3196233 3196547 . - . ID=gene3435;Name=SFV_RS17270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17270;old_locus_tag=SFV_3124 NC_008258.1 Protein Homology CDS 3196233 3196547 . - 0 ID=cds3361;Parent=gene3435;Dbxref=Genbank:WP_000550189.1;Name=WP_000550189.1;gbkey=CDS;product=mRNA interferase HigB;protein_id=WP_000550189.1;transl_table=11 NC_008258.1 RefSeq gene 3196489 3196728 . - . ID=gene3436;Name=SFV_RS17275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17275 NC_008258.1 Protein Homology CDS 3196489 3196728 . - 0 ID=cds3362;Parent=gene3436;Dbxref=Genbank:WP_032140301.1;Name=WP_032140301.1;gbkey=CDS;product=toxin RelE;protein_id=WP_032140301.1;transl_table=11 NC_008258.1 RefSeq gene 3196832 3197968 . - . ID=gene3437;Name=SFV_RS17280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17280 NC_008258.1 Protein Homology CDS 3196832 3197968 . - 0 ID=cds3363;Parent=gene3437;Dbxref=Genbank:WP_000018658.1;Name=WP_000018658.1;gbkey=CDS;product=ribosomal RNA large subunit methyltransferase G;protein_id=WP_000018658.1;transl_table=11 NC_008258.1 RefSeq gene 3198053 3198556 . + . ID=gene3438;Name=SFV_RS17285;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17285;pseudo=true NC_008258.1 Protein Homology CDS 3198053 3198556 . + 0 ID=cds3364;Parent=gene3438;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3198194..3198196%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3198633 3199325 . + . ID=gene3439;Name=SFV_RS17290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17290;old_locus_tag=SFV_3127 NC_008258.1 Protein Homology CDS 3198633 3199325 . + 0 ID=cds3365;Parent=gene3439;Dbxref=Genbank:WP_000942537.1;Name=WP_000942537.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000942537.1;transl_table=11 NC_008258.1 RefSeq gene 3199404 3200402 . + . ID=gene3440;Name=SFV_RS17295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17295;old_locus_tag=SFV_3128 NC_008258.1 Protein Homology CDS 3199404 3200402 . + 0 ID=cds3366;Parent=gene3440;Dbxref=Genbank:WP_005050984.1;Name=WP_005050984.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_005050984.1;transl_table=11 NC_008258.1 RefSeq gene 3200673 3201638 . + . ID=gene3441;Name=SFV_RS17300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17300;old_locus_tag=SFV_3129 NC_008258.1 Protein Homology CDS 3200673 3201638 . + 0 ID=cds3367;Parent=gene3441;Dbxref=Genbank:WP_001098805.1;Name=WP_001098805.1;gbkey=CDS;product=membrane protein;protein_id=WP_001098805.1;transl_table=11 NC_008258.1 RefSeq gene 3202234 3203478 . + . ID=gene3442;Name=SFV_RS17305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17305;old_locus_tag=SFV_3130 NC_008258.1 Protein Homology CDS 3202234 3203478 . + 0 ID=cds3368;Parent=gene3442;Dbxref=Genbank:WP_000211655.1;Name=WP_000211655.1;Note=involved in the import of serine and threonine coupled with the import of sodium;gbkey=CDS;product=serine/threonine transporter SstT;protein_id=WP_000211655.1;transl_table=11 NC_008258.1 RefSeq gene 3203483 3204034 . - . ID=gene3443;Name=SFV_RS17310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17310;old_locus_tag=SFV_3131 NC_008258.1 Protein Homology CDS 3203483 3204034 . - 0 ID=cds3369;Parent=gene3443;Dbxref=Genbank:WP_000128136.1;Name=WP_000128136.1;gbkey=CDS;product=membrane protein;protein_id=WP_000128136.1;transl_table=11 NC_008258.1 RefSeq gene 3204117 3205604 . - . ID=gene3444;Name=SFV_RS17315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17315;old_locus_tag=SFV_3132 NC_008258.1 Protein Homology CDS 3204117 3205604 . - 0 ID=cds3370;Parent=gene3444;Dbxref=Genbank:WP_001199360.1;Name=WP_001199360.1;gbkey=CDS;product=altronate hydrolase;protein_id=WP_001199360.1;transl_table=11 NC_008258.1 RefSeq gene 3205619 3207031 . - . ID=gene3445;Name=SFV_RS17320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17320;old_locus_tag=SFV_3133 NC_008258.1 Protein Homology CDS 3205619 3207031 . - 0 ID=cds3371;Parent=gene3445;Dbxref=Genbank:WP_000187442.1;Name=WP_000187442.1;Note=catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate%3B functions in glucuronic and galacturonic metabolism;gbkey=CDS;product=uronate isomerase;protein_id=WP_000187442.1;transl_table=11 NC_008258.1 RefSeq gene 3207515 3208813 . + . ID=gene3446;Name=SFV_RS17325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17325;old_locus_tag=SFV_3134 NC_008258.1 Protein Homology CDS 3207515 3208813 . + 0 ID=cds3372;Parent=gene3446;Dbxref=Genbank:WP_001226465.1;Name=WP_001226465.1;Note=involved in the transport of aldohexuronates;gbkey=CDS;product=hexuronate transporter;protein_id=WP_001226465.1;transl_table=11 NC_008258.1 RefSeq gene 3208901 3209989 . - . ID=gene3447;Name=SFV_RS17330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17330;old_locus_tag=SFV_3135 NC_008258.1 Protein Homology CDS 3208901 3209989 . - 0 ID=cds3373;Parent=gene3447;Dbxref=Genbank:WP_005050975.1;Name=WP_005050975.1;gbkey=CDS;product=cblD like pilus biogenesis initiator family protein;protein_id=WP_005050975.1;transl_table=11 NC_008258.1 RefSeq gene 3209986 3212670 . - . ID=gene3448;Name=SFV_RS17335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17335;old_locus_tag=SFV_3136 NC_008258.1 Protein Homology CDS 3209986 3212670 . - 0 ID=cds3374;Parent=gene3448;Dbxref=Genbank:WP_000358679.1;Name=WP_000358679.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000358679.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3212696 3213473 . + . ID=id519;gbkey=repeat_region NC_008258.1 RefSeq region 3212700 3213467 . + . ID=id520;gbkey=mobile_element NC_008258.1 RefSeq gene 3212949 3213452 . + . ID=gene3449;Name=SFV_RS17340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17340;old_locus_tag=SFV_3137 NC_008258.1 Protein Homology CDS 3212949 3213452 . + 0 ID=cds3375;Parent=gene3449;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 3213560 3214336 . + . ID=gene3450;Name=SFV_RS17345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17345;old_locus_tag=SFV_3138 NC_008258.1 Protein Homology CDS 3213560 3214336 . + 0 ID=cds3376;Parent=gene3450;Dbxref=Genbank:WP_000406488.1;Name=WP_000406488.1;Note=regulates the expression of uxuBA;gbkey=CDS;product=exu regulon transcriptional regulator;protein_id=WP_000406488.1;transl_table=11 NC_008258.1 RefSeq gene 3214681 3215343 . + . ID=gene3451;Name=SFV_RS17350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17350;old_locus_tag=SFV_3139 NC_008258.1 Protein Homology CDS 3214681 3215343 . + 0 ID=cds3377;Parent=gene3451;Dbxref=Genbank:WP_000422149.1;Name=WP_000422149.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000422149.1;transl_table=11 NC_008258.1 RefSeq gene 3215347 3215730 . + . ID=gene3452;Name=SFV_RS17355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17355;old_locus_tag=SFV_3140 NC_008258.1 Protein Homology CDS 3215347 3215730 . + 0 ID=cds3378;Parent=gene3452;Dbxref=Genbank:WP_001166766.1;Name=WP_001166766.1;gbkey=CDS;product=membrane protein;protein_id=WP_001166766.1;transl_table=11 NC_008258.1 RefSeq gene 3215877 3216311 . + . ID=gene3453;Name=SFV_RS17360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17360;old_locus_tag=SFV_3141 NC_008258.1 Protein Homology CDS 3215877 3216311 . + 0 ID=cds3379;Parent=gene3453;Dbxref=Genbank:WP_005050960.1;Name=WP_005050960.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005050960.1;transl_table=11 NC_008258.1 RefSeq gene 3216269 3216574 . + . ID=gene3454;Name=SFV_RS17365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17365;old_locus_tag=SFV_3142 NC_008258.1 Protein Homology CDS 3216269 3216574 . + 0 ID=cds3380;Parent=gene3454;Dbxref=Genbank:WP_000031413.1;Name=WP_000031413.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000031413.1;transl_table=11 NC_008258.1 RefSeq gene 3216577 3216981 . + . ID=gene3455;Name=SFV_RS17370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17370;old_locus_tag=SFV_3143 NC_008258.1 Protein Homology CDS 3216577 3216981 . + 0 ID=cds3381;Parent=gene3455;Dbxref=Genbank:WP_000785722.1;Name=WP_000785722.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000785722.1;transl_table=11 NC_008258.1 RefSeq gene 3216971 3217270 . + . ID=gene3456;Name=SFV_RS17375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17375;old_locus_tag=SFV_3144 NC_008258.1 Protein Homology CDS 3216971 3217270 . + 0 ID=cds3382;Parent=gene3456;Dbxref=Genbank:WP_000096086.1;Name=WP_000096086.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000096086.1;transl_table=11 NC_008258.1 RefSeq gene 3217456 3217752 . + . ID=gene3457;Name=SFV_RS17380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17380 NC_008258.1 Protein Homology CDS 3217456 3217752 . + 0 ID=cds3383;Parent=gene3457;Dbxref=Genbank:WP_000732224.1;Name=WP_000732224.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000732224.1;transl_table=11 NC_008258.1 RefSeq gene 3217822 3218808 . + . ID=gene3458;Name=SFV_RS17385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17385;old_locus_tag=SFV_3146 NC_008258.1 Protein Homology CDS 3217822 3218808 . + 0 ID=cds3384;Parent=gene3458;Dbxref=Genbank:WP_000531201.1;Name=WP_000531201.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000531201.1;transl_table=11 NC_008258.1 RefSeq gene 3219101 3219469 . + . ID=gene3459;Name=SFV_RS17390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17390;old_locus_tag=SFV_3147 NC_008258.1 Protein Homology CDS 3219101 3219469 . + 0 ID=cds3385;Parent=gene3459;Dbxref=Genbank:WP_001314179.1;Name=WP_001314179.1;gbkey=CDS;product=membrane protein;protein_id=WP_001314179.1;transl_table=11 NC_008258.1 RefSeq gene 3219676 3220572 . - . ID=gene3460;Name=SFV_RS17395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17395;old_locus_tag=SFV_3148 NC_008258.1 Protein Homology CDS 3219676 3220572 . - 0 ID=cds3386;Parent=gene3460;Dbxref=Genbank:WP_001041008.1;Name=WP_001041008.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_001041008.1;transl_table=11 NC_008258.1 RefSeq gene 3220677 3221378 . + . ID=gene3461;Name=SFV_RS17400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17400;old_locus_tag=SFV_3149 NC_008258.1 Protein Homology CDS 3220677 3221378 . + 0 ID=cds3387;Parent=gene3461;Dbxref=Genbank:WP_000633581.1;Name=WP_000633581.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000633581.1;transl_table=11 NC_008258.1 RefSeq gene 3221398 3221565 . + . ID=gene3462;Name=SFV_RS17405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17405;old_locus_tag=SFV_3150 NC_008258.1 Protein Homology CDS 3221398 3221565 . + 0 ID=cds3388;Parent=gene3462;Dbxref=Genbank:WP_005089560.1;Name=WP_005089560.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005089560.1;transl_table=11 NC_008258.1 RefSeq gene 3221777 3223087 . - . ID=gene3463;Name=SFV_RS17410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17410;old_locus_tag=SFV_3151 NC_008258.1 Protein Homology CDS 3221777 3223087 . - 0 ID=cds3389;Parent=gene3463;Dbxref=Genbank:WP_000460517.1;Name=WP_000460517.1;gbkey=CDS;product=membrane protein;protein_id=WP_000460517.1;transl_table=11 NC_008258.1 RefSeq gene 3223115 3224446 . - . ID=gene3464;Name=SFV_RS17415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17415;old_locus_tag=SFV_3152 NC_008258.1 Protein Homology CDS 3223115 3224446 . - 0 ID=cds3390;Parent=gene3464;Dbxref=Genbank:WP_000401609.1;Name=WP_000401609.1;gbkey=CDS;product=membrane protein;protein_id=WP_000401609.1;transl_table=11 NC_008258.1 RefSeq gene 3224721 3226085 . - . ID=gene3465;Name=SFV_RS17420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17420;old_locus_tag=SFV_3153 NC_008258.1 Protein Homology CDS 3224721 3226085 . - 0 ID=cds3391;Parent=gene3465;Dbxref=Genbank:WP_000622115.1;Name=WP_000622115.1;Note=catalyzes the formation of pyruvate from serine;gbkey=CDS;product=L-serine dehydratase;protein_id=WP_000622115.1;transl_table=11 NC_008258.1 RefSeq gene 3226157 3226546 . - . ID=gene3466;Name=SFV_RS17425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17425;old_locus_tag=SFV_3154 NC_008258.1 Protein Homology CDS 3226157 3226546 . - 0 ID=cds3392;Parent=gene3466;Dbxref=Genbank:WP_000719990.1;Name=WP_000719990.1;Note=has endoribonuclease activity on mRNA;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_000719990.1;transl_table=11 NC_008258.1 RefSeq gene 3226560 3228854 . - . ID=gene3467;Name=SFV_RS17430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17430;old_locus_tag=SFV_3155 NC_008258.1 Protein Homology CDS 3226560 3228854 . - 0 ID=cds3393;Parent=gene3467;Dbxref=Genbank:WP_000861754.1;Name=WP_000861754.1;Note=formate acetyltransferase%3B catalyzes the formation of formate and acetyl-CoA from pyruvate;gbkey=CDS;product=keto-acid formate acetyltransferase;protein_id=WP_000861754.1;transl_table=11 NC_008258.1 RefSeq gene 3228888 3230096 . - . ID=gene3468;Name=SFV_RS17435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17435;old_locus_tag=SFV_3156 NC_008258.1 Protein Homology CDS 3228888 3230096 . - 0 ID=cds3394;Parent=gene3468;Dbxref=Genbank:WP_005050924.1;Name=WP_005050924.1;Note=catalyzes the formation of propanoyl phosphate from propanoate and ATP%3B TdcD also has acetate kinase activities and functions in anaerobic threonine catabolism;gbkey=CDS;product=kinase;protein_id=WP_005050924.1;transl_table=11 NC_008258.1 RefSeq gene 3230122 3231453 . - . ID=gene3469;Name=SFV_RS17440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17440;old_locus_tag=SFV_3157 NC_008258.1 Protein Homology CDS 3230122 3231453 . - 0 ID=cds3395;Parent=gene3469;Dbxref=Genbank:WP_000107721.1;Name=WP_000107721.1;gbkey=CDS;product=threonine/serine transporter TdcC;protein_id=WP_000107721.1;transl_table=11 NC_008258.1 RefSeq gene 3231475 3232464 . - . ID=gene3470;Name=SFV_RS17445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17445;old_locus_tag=SFV_3158 NC_008258.1 Protein Homology CDS 3231475 3232464 . - 0 ID=cds3396;Parent=gene3470;Dbxref=Genbank:WP_000548348.1;Name=WP_000548348.1;Note=catalyzes the formation of 2-oxobutanoate from L-threonine%3B catabolic;gbkey=CDS;product=threonine dehydratase;protein_id=WP_000548348.1;transl_table=11 NC_008258.1 RefSeq gene 3232563 3233501 . - . ID=gene3471;Name=SFV_RS17450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17450;old_locus_tag=SFV_3159 NC_008258.1 Protein Homology CDS 3232563 3233501 . - 0 ID=cds3397;Parent=gene3471;Dbxref=Genbank:WP_000104211.1;Name=WP_000104211.1;Note=regulates the tdcABCDEFG operon which is involved in amino acid degradation;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000104211.1;transl_table=11 NC_008258.1 RefSeq gene 3233691 3234035 . + . ID=gene3472;Name=SFV_RS17455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17455;old_locus_tag=SFV_3160 NC_008258.1 Protein Homology CDS 3233691 3234035 . + 0 ID=cds3398;Parent=gene3472;Dbxref=Genbank:WP_000145836.1;Name=WP_000145836.1;Note=participates in controlling the expression of several structural genes for the enzyme threonine dehydratase%3B TdcR activates the tdcABCDEFG operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000145836.1;transl_table=11 NC_008258.1 RefSeq gene 3234291 3234830 . + . ID=gene3473;Name=SFV_RS17460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17460;old_locus_tag=SFV_3161 NC_008258.1 Protein Homology CDS 3234291 3234830 . + 0 ID=cds3399;Parent=gene3473;Dbxref=Genbank:WP_000675742.1;Name=WP_000675742.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000675742.1;transl_table=11 NC_008258.1 RefSeq gene 3234852 3236018 . + . ID=gene3474;Name=SFV_RS17465;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17465;pseudo=true NC_008258.1 Protein Homology CDS 3234852 3236018 . + 0 ID=cds3400;Parent=gene3474;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3236136 3236243 . + . ID=id521;gbkey=repeat_region NC_008258.1 RefSeq repeat_region 3236289 3236661 . + . ID=id522;gbkey=repeat_region NC_008258.1 RefSeq gene 3237049 3238194 . - . ID=gene3475;Name=SFV_RS17470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17470;old_locus_tag=SFV_3164 NC_008258.1 Protein Homology CDS 3237049 3238194 . - 0 ID=cds3401;Parent=gene3475;Dbxref=Genbank:WP_024260310.1;Name=WP_024260310.1;gbkey=CDS;product=glycerate kinase;protein_id=WP_024260310.1;transl_table=11 NC_008258.1 RefSeq gene 3238291 3239181 . - . ID=gene3476;Name=garR;gbkey=Gene;gene=garR;gene_biotype=protein_coding;locus_tag=SFV_RS17475;old_locus_tag=SFV_3165 NC_008258.1 Protein Homology CDS 3238291 3239181 . - 0 ID=cds3402;Parent=gene3476;Dbxref=Genbank:WP_005071094.1;Name=WP_005071094.1;Note=catalyzes the reduction of tartronate semialdehyde to glycerate;gbkey=CDS;gene=garR;product=2-hydroxy-3-oxopropionate reductase;protein_id=WP_005071094.1;transl_table=11 NC_008258.1 RefSeq gene 3239211 3239756 . - . ID=gene3477;Name=SFV_RS17480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17480;old_locus_tag=SFV_3166 NC_008258.1 Protein Homology CDS 3239211 3239756 . - 0 ID=cds3403;Parent=gene3477;Dbxref=Genbank:WP_001142824.1;Name=WP_001142824.1;Note=cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate;gbkey=CDS;product=aldolase;protein_id=WP_001142824.1;transl_table=11 NC_008258.1 RefSeq gene 3239757 3239981 . - . ID=gene3478;Name=SFV_RS17485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17485 NC_008258.1 Protein Homology CDS 3239757 3239981 . - 0 ID=cds3404;Parent=gene3478;Dbxref=Genbank:WP_001058206.1;Name=WP_001058206.1;gbkey=CDS;product=2-dehydro-3-deoxyglucarate aldolase;protein_id=WP_001058206.1;transl_table=11 NC_008258.1 RefSeq gene 3239997 3241292 . - . ID=gene3479;Name=SFV_RS17490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17490;old_locus_tag=SFV_3167 NC_008258.1 Protein Homology CDS 3239997 3241292 . - 0 ID=cds3405;Parent=gene3479;Dbxref=Genbank:WP_049760417.1;Name=WP_049760417.1;gbkey=CDS;product=galactonate transporter;protein_id=WP_049760417.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3241268 3242040 . + . ID=id523;gbkey=repeat_region NC_008258.1 RefSeq region 3241270 3242037 . - . ID=id524;gbkey=mobile_element NC_008258.1 RefSeq gene 3241285 3241680 . - . ID=gene3480;Name=SFV_RS17495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17495 NC_008258.1 Protein Homology CDS 3241285 3241680 . - 0 ID=cds3406;Parent=gene3480;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 3241707 3241982 . - . ID=gene3481;Name=SFV_RS17500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17500 NC_008258.1 Protein Homology CDS 3241707 3241982 . - 0 ID=cds3407;Parent=gene3481;Dbxref=Genbank:WP_005027844.1;Name=WP_005027844.1;gbkey=CDS;product=transposase;protein_id=WP_005027844.1;transl_table=11 NC_008258.1 RefSeq gene 3242032 3242538 . + . ID=gene3482;Name=SFV_RS17505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17505 NC_008258.1 Protein Homology CDS 3242032 3242538 . + 0 ID=cds3408;Parent=gene3482;Dbxref=Genbank:WP_044024163.1;Name=WP_044024163.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_044024163.1;transl_table=11 NC_008258.1 RefSeq gene 3242618 3243313 . + . ID=gene3483;Name=SFV_RS17510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17510;old_locus_tag=SFV_3171 NC_008258.1 Protein Homology CDS 3242618 3243313 . + 0 ID=cds3409;Parent=gene3483;Dbxref=Genbank:WP_000044776.1;Name=WP_000044776.1;gbkey=CDS;product=fimbrial chaperone;protein_id=WP_000044776.1;transl_table=11 NC_008258.1 RefSeq gene 3243342 3245066 . + . ID=gene3484;Name=SFV_RS17515;end_range=3245066,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17515;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3243342 3245066 . + 0 ID=cds3410;Parent=gene3484;end_range=3245066,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_except=(pos:3243993..3243995%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 3245063 3246399 . + . ID=id525;gbkey=repeat_region NC_008258.1 RefSeq region 3245067 3246397 . - . ID=id526;gbkey=mobile_element NC_008258.1 RefSeq gene 3245078 3245500 . - . ID=gene3485;Name=SFV_RS17520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17520 NC_008258.1 Protein Homology CDS 3245078 3245500 . - 0 ID=cds3411;Parent=gene3485;Dbxref=Genbank:WP_011069523.1;Name=WP_011069523.1;gbkey=CDS;product=transposase;protein_id=WP_011069523.1;transl_table=11 NC_008258.1 RefSeq gene 3245636 3245938 . + . ID=gene3486;Name=SFV_RS17525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17525 NC_008258.1 Protein Homology CDS 3245636 3245938 . + 0 ID=cds3412;Parent=gene3486;Dbxref=Genbank:WP_000336276.1;Name=WP_000336276.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000336276.1;transl_table=11 NC_008258.1 RefSeq gene 3245941 3246306 . - . ID=gene3487;Name=SFV_RS17530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17530;old_locus_tag=SFV_3174 NC_008258.1 Protein Homology CDS 3245941 3246306 . - 0 ID=cds3413;Parent=gene3487;Dbxref=Genbank:WP_000567796.1;Name=WP_000567796.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567796.1;transl_table=11 NC_008258.1 RefSeq gene 3246400 3247194 . + . ID=gene3488;Name=SFV_RS17535;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17535;partial=true;pseudo=true;start_range=.,3246400 NC_008258.1 Protein Homology CDS 3246400 3247194 . + 0 ID=cds3414;Parent=gene3488;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3246400;transl_table=11 NC_008258.1 RefSeq gene 3247205 3248296 . + . ID=gene3489;Name=SFV_RS17540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17540;old_locus_tag=SFV_3175 NC_008258.1 Protein Homology CDS 3247205 3248296 . + 0 ID=cds3415;Parent=gene3489;Dbxref=Genbank:WP_000816998.1;Name=WP_000816998.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000816998.1;transl_table=11 NC_008258.1 RefSeq gene 3248339 3249199 . - . ID=gene3490;Name=SFV_RS17545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17545;old_locus_tag=SFV_3176 NC_008258.1 Protein Homology CDS 3248339 3249199 . - 0 ID=cds3416;Parent=gene3490;Dbxref=Genbank:WP_000809275.1;Name=WP_000809275.1;gbkey=CDS;product=16S rRNA (cytidine(1402)-2'-O)-methyltransferase;protein_id=WP_000809275.1;transl_table=11 NC_008258.1 RefSeq gene 3249264 3251300 . + . ID=gene3491;Name=SFV_RS17550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17550;old_locus_tag=SFV_3177 NC_008258.1 Protein Homology CDS 3249264 3251300 . + 0 ID=cds3417;Parent=gene3491;Dbxref=Genbank:WP_000249125.1;Name=WP_000249125.1;gbkey=CDS;product=penicillin-binding protein activator LpoA;protein_id=WP_000249125.1;transl_table=11 NC_008258.1 RefSeq gene 3251258 3251653 . + . ID=gene3492;Name=SFV_RS17555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17555;old_locus_tag=SFV_3178 NC_008258.1 Protein Homology CDS 3251258 3251653 . + 0 ID=cds3418;Parent=gene3492;Dbxref=Genbank:WP_000246827.1;Name=WP_000246827.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000246827.1;transl_table=11 NC_008258.1 RefSeq gene 3251673 3252263 . + . ID=gene3493;Name=SFV_RS17560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17560;old_locus_tag=SFV_3179 NC_008258.1 Protein Homology CDS 3251673 3252263 . + 0 ID=cds3419;Parent=gene3493;Dbxref=Genbank:WP_001158030.1;Name=WP_001158030.1;Note=Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein;gbkey=CDS;product=DnaA initiator-associating protein DiaA;protein_id=WP_001158030.1;transl_table=11 NC_008258.1 RefSeq gene 3252273 3252848 . + . ID=gene3494;Name=SFV_RS17565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17565;old_locus_tag=SFV_3180 NC_008258.1 Protein Homology CDS 3252273 3252848 . + 0 ID=cds3420;Parent=gene3494;Dbxref=Genbank:WP_000646043.1;Name=WP_000646043.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000646043.1;transl_table=11 NC_008258.1 RefSeq gene 3252962 3254002 . - . ID=gene3495;Name=SFV_RS17570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17570;old_locus_tag=SFV_3181 NC_008258.1 Protein Homology CDS 3252962 3254002 . - 0 ID=cds3421;Parent=gene3495;Dbxref=Genbank:WP_000147611.1;Name=WP_000147611.1;gbkey=CDS;product=membrane protein;protein_id=WP_000147611.1;transl_table=11 NC_008258.1 RefSeq gene 3254075 3254710 . - . ID=gene3496;Name=SFV_RS17575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17575;old_locus_tag=SFV_3182 NC_008258.1 Protein Homology CDS 3254075 3254710 . - 0 ID=cds3422;Parent=gene3496;Dbxref=Genbank:WP_001343556.1;Name=WP_001343556.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001343556.1;transl_table=11 NC_008258.1 RefSeq gene 3254838 3255356 . + . ID=gene3497;Name=SFV_RS17580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17580;old_locus_tag=SFV_3183 NC_008258.1 Protein Homology CDS 3254838 3255356 . + 0 ID=cds3423;Parent=gene3497;Dbxref=Genbank:WP_005050810.1;Name=WP_005050810.1;gbkey=CDS;product=general stress protein;protein_id=WP_005050810.1;transl_table=11 NC_008258.1 RefSeq gene 3255336 3255779 . - . ID=gene3498;Name=SFV_RS17585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17585;old_locus_tag=SFV_3184 NC_008258.1 Protein Homology CDS 3255336 3255779 . - 0 ID=cds3424;Parent=gene3498;Dbxref=Genbank:WP_000449030.1;Name=WP_000449030.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000449030.1;transl_table=11 NC_008258.1 RefSeq gene 3255830 3256132 . + . ID=gene3499;Name=SFV_RS17590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17590;old_locus_tag=SFV_3185 NC_008258.1 Protein Homology CDS 3255830 3256132 . + 0 ID=cds3425;Parent=gene3499;Dbxref=Genbank:WP_000189314.1;Name=WP_000189314.1;gbkey=CDS;product=nuclease;protein_id=WP_000189314.1;transl_table=11 NC_008258.1 RefSeq gene 3256119 3256622 . - . ID=gene3500;Name=SFV_RS17595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17595;old_locus_tag=SFV_3186 NC_008258.1 Protein Homology CDS 3256119 3256622 . - 0 ID=cds3426;Parent=gene3500;Dbxref=Genbank:WP_000908550.1;Name=WP_000908550.1;gbkey=CDS;product=N-acetyltransferase;protein_id=WP_000908550.1;transl_table=11 NC_008258.1 RefSeq gene 3256616 3257140 . - . ID=gene3501;Name=SFV_RS17600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17600;old_locus_tag=SFV_3187 NC_008258.1 Protein Homology CDS 3256616 3257140 . - 0 ID=cds3427;Parent=gene3501;Dbxref=Genbank:WP_005105898.1;Name=WP_005105898.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005105898.1;transl_table=11 NC_008258.1 RefSeq gene 3257349 3258344 . + . ID=gene3502;Name=SFV_RS17605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17605;old_locus_tag=SFV_3188 NC_008258.1 Protein Homology CDS 3257349 3258344 . + 0 ID=cds3428;Parent=gene3502;Dbxref=Genbank:WP_000421305.1;Name=WP_000421305.1;gbkey=CDS;product=collagenase;protein_id=WP_000421305.1;transl_table=11 NC_008258.1 RefSeq gene 3258353 3259198 . + . ID=gene3503;Name=SFV_RS17610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17610;old_locus_tag=SFV_3189 NC_008258.1 Protein Homology CDS 3258353 3259198 . + 0 ID=cds3429;Parent=gene3503;Dbxref=Genbank:WP_000877707.1;Name=WP_000877707.1;gbkey=CDS;product=protease;protein_id=WP_000877707.1;transl_table=11 NC_008258.1 RefSeq gene 3259312 3260319 . + . ID=gene3504;Name=SFV_RS17615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17615;old_locus_tag=SFV_3190 NC_008258.1 Protein Homology CDS 3259312 3260319 . + 0 ID=cds3430;Parent=gene3504;Dbxref=Genbank:WP_000130375.1;Name=WP_000130375.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000130375.1;transl_table=11 NC_008258.1 RefSeq gene 3260437 3261681 . - . ID=gene3505;Name=SFV_RS17620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17620;old_locus_tag=SFV_3191 NC_008258.1 Protein Homology CDS 3260437 3261681 . - 0 ID=cds3431;Parent=gene3505;Dbxref=Genbank:WP_000224351.1;Name=WP_000224351.1;Note=tryptophan transporter of high affinity;gbkey=CDS;product=tryptophan-specific transporter;protein_id=WP_000224351.1;transl_table=11 NC_008258.1 RefSeq gene 3261697 3261834 . + . ID=gene3506;Name=SFV_RS17625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17625 NC_008258.1 Protein Homology CDS 3261697 3261834 . + 0 ID=cds3432;Parent=gene3506;Dbxref=Genbank:WP_001346700.1;Name=WP_001346700.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001346700.1;transl_table=11 NC_008258.1 RefSeq gene 3261835 3263724 . - . ID=gene3507;Name=SFV_RS17630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17630;old_locus_tag=SFV_3192 NC_008258.1 Protein Homology CDS 3261835 3263724 . - 0 ID=cds3433;Parent=gene3507;Dbxref=Genbank:WP_001295553.1;Name=WP_001295553.1;Note=participates in the assembly of the large subunit of the ribosome%3B plays a key role in optimal cell growth at low temperature and is required for normal cell division;gbkey=CDS;product=DEAD/DEAH box family ATP-dependent RNA helicase;protein_id=WP_001295553.1;transl_table=11 NC_008258.1 RefSeq gene 3263904 3264788 . - . ID=gene3508;Name=SFV_RS17635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17635;old_locus_tag=SFV_3193 NC_008258.1 Protein Homology CDS 3263904 3264788 . - 0 ID=cds3434;Parent=gene3508;Dbxref=Genbank:WP_000802080.1;Name=WP_000802080.1;Note=lipoprotein that appears to be involved in cell division%3B interacts with the periplasmic protease Prc and may be activated by protease processing;gbkey=CDS;product=lipoprotein NlpI;protein_id=WP_000802080.1;transl_table=11 NC_008258.1 RefSeq gene 3264897 3267032 . - . ID=gene3509;Name=SFV_RS17640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17640;old_locus_tag=SFV_3194 NC_008258.1 Protein Homology CDS 3264897 3267032 . - 0 ID=cds3435;Parent=gene3509;Dbxref=Genbank:WP_001297425.1;Name=WP_001297425.1;gbkey=CDS;product=polyribonucleotide nucleotidyltransferase;protein_id=WP_001297425.1;transl_table=11 NC_008258.1 RefSeq gene 3267279 3267548 . - . ID=gene3510;Name=SFV_RS17645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17645;old_locus_tag=SFV_3195 NC_008258.1 Protein Homology CDS 3267279 3267548 . - 0 ID=cds3436;Parent=gene3510;Dbxref=Genbank:WP_000059466.1;Name=WP_000059466.1;gbkey=CDS;product=30S ribosomal protein S15;protein_id=WP_000059466.1;transl_table=11 NC_008258.1 RefSeq gene 3267697 3268641 . - . ID=gene3511;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=SFV_RS17650;old_locus_tag=SFV_3196 NC_008258.1 Protein Homology CDS 3267697 3268641 . - 0 ID=cds3437;Parent=gene3511;Dbxref=Genbank:WP_000089698.1;Name=WP_000089698.1;Note=catalyzes isomerization of specific uridines in RNA to pseudouridine%3B responsible for residues in T loops of many tRNAs;gbkey=CDS;gene=truB;product=tRNA pseudouridine synthase B;protein_id=WP_000089698.1;transl_table=11 NC_008258.1 RefSeq gene 3268641 3269042 . - . ID=gene3512;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=SFV_RS17655;old_locus_tag=SFV_3197 NC_008258.1 Protein Homology CDS 3268641 3269042 . - 0 ID=cds3438;Parent=gene3512;Dbxref=Genbank:WP_001040205.1;Name=WP_001040205.1;Note=associates with free 30S ribosomal subunits%3B essential for efficient processing of 16S rRNA%3B in Escherichia coli rbfA is induced by cold shock;gbkey=CDS;gene=rbfA;product=ribosome-binding factor A;protein_id=WP_001040205.1;transl_table=11 NC_008258.1 RefSeq gene 3269206 3271854 . - . ID=gene3513;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=SFV_RS17660;old_locus_tag=SFV_3198 NC_008258.1 Protein Homology CDS 3269206 3271854 . - 0 ID=cds3439;Parent=gene3513;Dbxref=Genbank:WP_000133056.1;Name=WP_000133056.1;Note=Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex;gbkey=CDS;gene=infB;product=translation initiation factor IF-2;protein_id=WP_000133056.1;transl_table=11 NC_008258.1 RefSeq gene 3271879 3273366 . - . ID=gene3514;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=SFV_RS17665;old_locus_tag=SFV_3199 NC_008258.1 Protein Homology CDS 3271879 3273366 . - 0 ID=cds3440;Parent=gene3514;Dbxref=Genbank:WP_001031050.1;Name=WP_001031050.1;Note=modifies transcription through interactions with RNA polymerase affecting elongation%2C readthrough%2C termination%2C and antitermination;gbkey=CDS;gene=nusA;product=transcription termination factor NusA;protein_id=WP_001031050.1;transl_table=11 NC_008258.1 RefSeq gene 3273394 3273846 . - . ID=gene3515;Name=SFV_RS17670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17670;old_locus_tag=SFV_3200 NC_008258.1 Protein Homology CDS 3273394 3273846 . - 0 ID=cds3441;Parent=gene3515;Dbxref=Genbank:WP_001300397.1;Name=WP_001300397.1;Note=required for the maturation of the 30S ribosomal subunits;gbkey=CDS;product=ribosome maturation factor RimP;protein_id=WP_001300397.1;transl_table=11 NC_008258.1 RefSeq gene 3274053 3274129 . - . ID=gene3516;Name=SFV_RS17675;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS17675;old_locus_tag=SFV_3201 NC_008258.1 tRNAscan-SE tRNA 3274053 3274129 . - . ID=rna74;Parent=gene3516;anticodon=(pos:complement(3274093..3274095));gbkey=tRNA;product=tRNA-Met NC_008258.1 tRNAscan-SE exon 3274053 3274129 . - . ID=id527;Parent=rna74;anticodon=(pos:complement(3274093..3274095));gbkey=tRNA;product=tRNA-Met NC_008258.1 RefSeq gene 3274477 3275820 . + . ID=gene3517;Name=SFV_RS17680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17680;old_locus_tag=SFV_3202 NC_008258.1 Protein Homology CDS 3274477 3275820 . + 0 ID=cds3442;Parent=gene3517;Dbxref=Genbank:WP_000207682.1;Name=WP_000207682.1;Note=catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis;gbkey=CDS;product=argininosuccinate synthase;protein_id=WP_000207682.1;transl_table=11 NC_008258.1 RefSeq gene 3275828 3277345 . - . ID=gene3518;Name=SFV_RS17685;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17685;pseudo=true NC_008258.1 Protein Homology CDS 3275828 3277345 . - 0 ID=cds3443;Parent=gene3518;gbkey=CDS;product=phosphate starvation-inducible protein PsiE;pseudo=true;transl_except=(pos:complement(3276914..3276916)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3277913 3277999 . - . ID=gene3519;Name=SFV_RS17690;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS17690;old_locus_tag=SFV_3204 NC_008258.1 tRNAscan-SE tRNA 3277913 3277999 . - . ID=rna75;Parent=gene3519;anticodon=(pos:complement(3277963..3277965));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 3277913 3277999 . - . ID=id528;Parent=rna75;anticodon=(pos:complement(3277963..3277965));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 3278014 3278346 . - . ID=gene3520;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=SFV_RS17695;old_locus_tag=SFV_3205 NC_008258.1 Protein Homology CDS 3278014 3278346 . - 0 ID=cds3444;Parent=gene3520;Dbxref=Genbank:WP_005050778.1;Name=WP_005050778.1;gbkey=CDS;gene=secG;product=preprotein translocase subunit SecG;protein_id=WP_005050778.1;transl_table=11 NC_008258.1 RefSeq gene 3278573 3279910 . - . ID=gene3521;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=SFV_RS17700;old_locus_tag=SFV_3206 NC_008258.1 Protein Homology CDS 3278573 3279910 . - 0 ID=cds3445;Parent=gene3521;Dbxref=Genbank:WP_000071149.1;Name=WP_000071149.1;Note=catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate;gbkey=CDS;gene=glmM;product=phosphoglucosamine mutase;protein_id=WP_000071149.1;transl_table=11 NC_008258.1 RefSeq gene 3279903 3280751 . - . ID=gene3522;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=SFV_RS17705;old_locus_tag=SFV_3207 NC_008258.1 Protein Homology CDS 3279903 3280751 . - 0 ID=cds3446;Parent=gene3522;Dbxref=Genbank:WP_000764731.1;Name=WP_000764731.1;Note=catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7%2C8-dihydropteridine diphosphate and 4-aminobenzoate;gbkey=CDS;gene=folP;product=dihydropteroate synthase;protein_id=WP_000764731.1;transl_table=11 NC_008258.1 RefSeq gene 3280841 3282775 . - . ID=gene3523;Name=hflB;gbkey=Gene;gene=hflB;gene_biotype=protein_coding;gene_synonym=ftsH;locus_tag=SFV_RS17710;old_locus_tag=SFV_3208 NC_008258.1 Protein Homology CDS 3280841 3282775 . - 0 ID=cds3447;Parent=gene3523;Dbxref=Genbank:WP_001107467.1;Name=WP_001107467.1;Note=inner membrane metalloprotease%3B may be involved in degradation of aberrant cytoplasmic and membrane proteins;gbkey=CDS;gene=hflB;product=ATP-dependent zinc metalloprotease FtsH;protein_id=WP_001107467.1;transl_table=11 NC_008258.1 RefSeq gene 3282875 3283504 . - . ID=gene3524;Name=rrmJ;gbkey=Gene;gene=rrmJ;gene_biotype=protein_coding;locus_tag=SFV_RS17715;old_locus_tag=SFV_3209 NC_008258.1 Protein Homology CDS 3282875 3283504 . - 0 ID=cds3448;Parent=gene3524;Dbxref=Genbank:WP_000145975.1;Name=WP_000145975.1;Note=Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit;gbkey=CDS;gene=rrmJ;product=ribosomal RNA large subunit methyltransferase E;protein_id=WP_000145975.1;transl_table=11 NC_008258.1 RefSeq gene 3283630 3283923 . + . ID=gene3525;Name=SFV_RS17720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17720;old_locus_tag=SFV_3210 NC_008258.1 Protein Homology CDS 3283630 3283923 . + 0 ID=cds3449;Parent=gene3525;Dbxref=Genbank:WP_001054420.1;Name=WP_001054420.1;Note=RNA binding protein found associated to pre-50S subunit of the ribosome%3B putative role in ribosome assembly%3B necessary for optimal growth but not cell viability;gbkey=CDS;product=RNA-binding protein;protein_id=WP_001054420.1;transl_table=11 NC_008258.1 RefSeq gene 3284079 3284555 . - . ID=gene3526;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=SFV_RS17725;old_locus_tag=SFV_3211 NC_008258.1 Protein Homology CDS 3284079 3284555 . - 0 ID=cds3450;Parent=gene3526;Dbxref=Genbank:WP_001148001.1;Name=WP_001148001.1;Note=necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus;gbkey=CDS;gene=greA;product=transcription elongation factor GreA;protein_id=WP_001148001.1;transl_table=11 NC_008258.1 RefSeq gene 3284803 3286236 . + . ID=gene3527;Name=SFV_RS17730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17730;old_locus_tag=SFV_3212 NC_008258.1 Protein Homology CDS 3284803 3286236 . + 0 ID=cds3451;Parent=gene3527;Dbxref=Genbank:WP_001212661.1;Name=WP_001212661.1;Note=penicillin binding protein 4%3B penicillin sensitive%3B catalyzes the formation of D-alanine from D-alanyl-D-alanine%3B one of four%2C DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains;gbkey=CDS;product=D-alanyl-D-alanine carboxypeptidase;protein_id=WP_001212661.1;transl_table=11 NC_008258.1 RefSeq gene 3286422 3287594 . - . ID=gene3528;Name=obgE;gbkey=Gene;gene=obgE;gene_biotype=protein_coding;gene_synonym=cgtA,obg,yhbZ;locus_tag=SFV_RS17735;old_locus_tag=SFV_3213 NC_008258.1 Protein Homology CDS 3286422 3287594 . - 0 ID=cds3452;Parent=gene3528;Dbxref=Genbank:WP_000673561.1;Name=WP_000673561.1;Note=ObgE%3B essential GTPase%3B exhibits high exchange rate for GTP/GDP%3B associates with 50S ribosomal subunit%3B involved in regulation of chromosomal replication;gbkey=CDS;gene=obgE;product=GTPase Obg;protein_id=WP_000673561.1;transl_table=11 NC_008258.1 RefSeq gene 3287610 3288575 . - . ID=gene3529;Name=SFV_RS17740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17740;old_locus_tag=SFV_3214 NC_008258.1 Protein Homology CDS 3287610 3288575 . - 0 ID=cds3453;Parent=gene3529;Dbxref=Genbank:WP_000813037.1;Name=WP_000813037.1;gbkey=CDS;product=transporter;protein_id=WP_000813037.1;transl_table=11 NC_008258.1 RefSeq gene 3288702 3288959 . - . ID=gene3530;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=SFV_RS17745;old_locus_tag=SFV_3215 NC_008258.1 Protein Homology CDS 3288702 3288959 . - 0 ID=cds3454;Parent=gene3530;Dbxref=Genbank:WP_000940595.1;Name=WP_000940595.1;Note=involved in the peptidyltransferase reaction during translation;gbkey=CDS;gene=rpmA;product=50S ribosomal protein L27;protein_id=WP_000940595.1;transl_table=11 NC_008258.1 RefSeq gene 3288980 3289291 . - . ID=gene3531;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=SFV_RS17750;old_locus_tag=SFV_3216 NC_008258.1 Protein Homology CDS 3288980 3289291 . - 0 ID=cds3455;Parent=gene3531;Dbxref=Genbank:WP_000271401.1;Name=WP_000271401.1;gbkey=CDS;gene=rplU;product=50S ribosomal protein L21;protein_id=WP_000271401.1;transl_table=11 NC_008258.1 RefSeq gene 3289549 3290520 . + . ID=gene3532;Name=SFV_RS17755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17755;old_locus_tag=SFV_3217 NC_008258.1 Protein Homology CDS 3289549 3290520 . + 0 ID=cds3456;Parent=gene3532;Dbxref=Genbank:WP_001047336.1;Name=WP_001047336.1;gbkey=CDS;product=octaprenyl-diphosphate synthase;protein_id=WP_001047336.1;transl_table=11 NC_008258.1 RefSeq gene 3290747 3291025 . + . ID=gene3533;Name=SFV_RS17760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17760;old_locus_tag=SFV_3218 NC_008258.1 Protein Homology CDS 3290747 3291025 . + 0 ID=cds3457;Parent=gene3533;Dbxref=Genbank:WP_000445413.1;Name=WP_000445413.1;Note=activator of maltose metabolism genes;gbkey=CDS;product=sugar fermentation stimulation protein B;protein_id=WP_000445413.1;transl_table=11 NC_008258.1 RefSeq gene 3291073 3292332 . - . ID=gene3534;Name=SFV_RS17765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17765;old_locus_tag=SFV_3219 NC_008258.1 Protein Homology CDS 3291073 3292332 . - 0 ID=cds3458;Parent=gene3534;Dbxref=Genbank:WP_000357259.1;Name=WP_000357259.1;gbkey=CDS;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=WP_000357259.1;transl_table=11 NC_008258.1 RefSeq gene 3292387 3292641 . - . ID=gene3535;Name=SFV_RS17770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17770;old_locus_tag=SFV_3220 NC_008258.1 Protein Homology CDS 3292387 3292641 . - 0 ID=cds3459;Parent=gene3535;Dbxref=Genbank:WP_000429656.1;Name=WP_000429656.1;gbkey=CDS;product=acid stress protein IbaG;protein_id=WP_000429656.1;transl_table=11 NC_008258.1 RefSeq gene 3292801 3293094 . - . ID=gene3536;Name=SFV_RS17775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17775 NC_008258.1 Protein Homology CDS 3292801 3293094 . - 0 ID=cds3460;Parent=gene3536;Dbxref=Genbank:WP_000004488.1;Name=WP_000004488.1;gbkey=CDS;product=phospholipid ABC transporter-binding protein;protein_id=WP_000004488.1;transl_table=11 NC_008258.1 RefSeq gene 3293094 3293729 . - . ID=gene3537;Name=SFV_RS17780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17780;old_locus_tag=SFV_3222 NC_008258.1 Protein Homology CDS 3293094 3293729 . - 0 ID=cds3461;Parent=gene3537;Dbxref=Genbank:WP_000476487.1;Name=WP_000476487.1;Note=involved in maintaining outer membrane lipid asymmetry;gbkey=CDS;product=phospholipid-binding protein;protein_id=WP_000476487.1;transl_table=11 NC_008258.1 RefSeq gene 3293748 3294299 . - . ID=gene3538;Name=SFV_RS17785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17785;old_locus_tag=SFV_3223 NC_008258.1 Protein Homology CDS 3293748 3294299 . - 0 ID=cds3462;Parent=gene3538;Dbxref=Genbank:WP_005050758.1;Name=WP_005050758.1;gbkey=CDS;product=outer membrane lipid asymmetry maintenance protein MlaD;protein_id=WP_005050758.1;transl_table=11 NC_008258.1 RefSeq gene 3294304 3295086 . - . ID=gene3539;Name=SFV_RS17790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17790;old_locus_tag=SFV_3224 NC_008258.1 Protein Homology CDS 3294304 3295086 . - 0 ID=cds3463;Parent=gene3539;Dbxref=Genbank:WP_000925795.1;Name=WP_000925795.1;gbkey=CDS;product=phospholipid ABC transporter permease;protein_id=WP_000925795.1;transl_table=11 NC_008258.1 RefSeq gene 3295094 3295903 . - . ID=gene3540;Name=SFV_RS17795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17795;old_locus_tag=SFV_3225 NC_008258.1 Protein Homology CDS 3295094 3295903 . - 0 ID=cds3464;Parent=gene3540;Dbxref=Genbank:WP_000438248.1;Name=WP_000438248.1;Note=ABC transporter maintaining outer membrane lipid asymmetry;gbkey=CDS;product=organic solvent ABC transporter ATP-binding protein;protein_id=WP_000438248.1;transl_table=11 NC_008258.1 RefSeq gene 3296113 3297078 . + . ID=gene3541;Name=SFV_RS17800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17800;old_locus_tag=SFV_3226 NC_008258.1 Protein Homology CDS 3296113 3297078 . + 0 ID=cds3465;Parent=gene3541;Dbxref=Genbank:WP_000922887.1;Name=WP_000922887.1;Note=YrbG%3B inner membrane protein involved in cell envelope integrity%3B putative sodium ion/calcium ion exchanger%3B in E. coli it is non essential for cell viability%3B member of the YRBG family of cation/Ca2+ exchangers;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_000922887.1;transl_table=11 NC_008258.1 RefSeq gene 3297092 3298078 . + . ID=gene3542;Name=SFV_RS17805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17805;old_locus_tag=SFV_3227 NC_008258.1 Protein Homology CDS 3297092 3298078 . + 0 ID=cds3466;Parent=gene3542;Dbxref=Genbank:WP_005050755.1;Name=WP_005050755.1;gbkey=CDS;product=arabinose 5-phosphate isomerase KdsD;protein_id=WP_005050755.1;transl_table=11 NC_008258.1 RefSeq gene 3298099 3298665 . + . ID=gene3543;Name=SFV_RS17810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17810;old_locus_tag=SFV_3228 NC_008258.1 Protein Homology CDS 3298099 3298665 . + 0 ID=cds3467;Parent=gene3543;Dbxref=Genbank:WP_000030016.1;Name=WP_000030016.1;Note=forms homotetramers%3B catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate%3B functions in lipopolysaccharide biosynthesis;gbkey=CDS;product=3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC;protein_id=WP_000030016.1;transl_table=11 NC_008258.1 RefSeq gene 3298662 3299237 . + . ID=gene3544;Name=SFV_RS17815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17815;old_locus_tag=SFV_3229 NC_008258.1 Protein Homology CDS 3298662 3299237 . + 0 ID=cds3468;Parent=gene3544;Dbxref=Genbank:WP_000030537.1;Name=WP_000030537.1;gbkey=CDS;product=LPS export ABC transporter periplasmic protein LptC;protein_id=WP_000030537.1;transl_table=11 NC_008258.1 RefSeq gene 3299206 3299763 . + . ID=gene3545;Name=SFV_RS17820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17820;old_locus_tag=SFV_3230 NC_008258.1 Protein Homology CDS 3299206 3299763 . + 0 ID=cds3469;Parent=gene3545;Dbxref=Genbank:WP_000669785.1;Name=WP_000669785.1;Note=LptA%3B periplasmic binding protein part of a putative ABC superfamily of uptake transporters%3B interacts with LptB protein%2C the ATP binding component of the uptake system;gbkey=CDS;product=LPS export system protein LptA;protein_id=WP_000669785.1;transl_table=11 NC_008258.1 RefSeq gene 3299770 3300495 . + . ID=gene3546;Name=SFV_RS17825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17825;old_locus_tag=SFV_3231 NC_008258.1 Protein Homology CDS 3299770 3300495 . + 0 ID=cds3470;Parent=gene3546;Dbxref=Genbank:WP_000224097.1;Name=WP_000224097.1;gbkey=CDS;product=LPS export ABC transporter ATP-binding protein;protein_id=WP_000224097.1;transl_table=11 NC_008258.1 RefSeq gene 3300543 3301976 . + . ID=gene3547;Name=SFV_RS17830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17830;old_locus_tag=SFV_3232 NC_008258.1 Protein Homology CDS 3300543 3301976 . + 0 ID=cds3471;Parent=gene3547;Dbxref=Genbank:WP_000809011.1;Name=WP_000809011.1;Note=sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released%3B sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism%3B the rhizobia often have 2 copies of this sigma factor%3B in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation%3B in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions%2C rpoN1 gene was regulated in response to oxygen;gbkey=CDS;product=RNA polymerase sigma-54 factor;protein_id=WP_000809011.1;transl_table=11 NC_008258.1 RefSeq gene 3301999 3302286 . + . ID=gene3548;Name=SFV_RS17835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17835;old_locus_tag=SFV_3233 NC_008258.1 Protein Homology CDS 3301999 3302286 . + 0 ID=cds3472;Parent=gene3548;Dbxref=Genbank:WP_001176599.1;Name=WP_001176599.1;Note=YhbH%3B resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase%3B binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization)%3B seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing;gbkey=CDS;product=ribosome hibernation promoting factor;protein_id=WP_001176599.1;transl_table=11 NC_008258.1 RefSeq gene 3302404 3302895 . + . ID=gene3549;Name=SFV_RS17840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17840;old_locus_tag=SFV_3234 NC_008258.1 Protein Homology CDS 3302404 3302895 . + 0 ID=cds3473;Parent=gene3549;Dbxref=Genbank:WP_000183676.1;Name=WP_000183676.1;Note=involved in nitrogen metabolism%3B protein IIA is phosphorylated by enzyme I(Ntr);gbkey=CDS;product=nitrogen regulatory protein;protein_id=WP_000183676.1;transl_table=11 NC_008258.1 RefSeq gene 3302941 3303795 . + . ID=gene3550;Name=SFV_RS17845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17845;old_locus_tag=SFV_3235 NC_008258.1 Protein Homology CDS 3302941 3303795 . + 0 ID=cds3474;Parent=gene3550;Dbxref=Genbank:WP_000243741.1;Name=WP_000243741.1;Note=glucosamine-6-phosphate regulated%3B inactivates the glmS upregulator glmZ;gbkey=CDS;product=glmZ(sRNA)-inactivating NTPase;protein_id=WP_000243741.1;transl_table=11 NC_008258.1 RefSeq gene 3303792 3304064 . + . ID=gene3551;Name=SFV_RS17850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17850;old_locus_tag=SFV_3236 NC_008258.1 Protein Homology CDS 3303792 3304064 . + 0 ID=cds3475;Parent=gene3551;Dbxref=Genbank:WP_000216791.1;Name=WP_000216791.1;gbkey=CDS;product=phosphocarrier protein NPr;protein_id=WP_000216791.1;transl_table=11 NC_008258.1 RefSeq gene 3304277 3304771 . + . ID=gene3552;Name=SFV_RS17855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17855;old_locus_tag=SFV_3237 NC_008258.1 Protein Homology CDS 3304277 3304771 . + 0 ID=cds3476;Parent=gene3552;Dbxref=Genbank:WP_000620400.1;Name=WP_000620400.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000620400.1;transl_table=11 NC_008258.1 RefSeq gene 3304906 3305633 . - . ID=gene3553;Name=mtgA;gbkey=Gene;gene=mtgA;gene_biotype=pseudogene;locus_tag=SFV_RS17860;pseudo=true NC_008258.1 Protein Homology CDS 3304906 3305633 . - 0 ID=cds3477;Parent=gene3553;Note=glycosyltransferase%3B polymerizes glycan strands in the peptidoglycan;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=mtgA;product=peptidoglycan transglycosylase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3305630 3306283 . - . ID=gene3554;Name=SFV_RS17865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17865;old_locus_tag=SFV_3239 NC_008258.1 Protein Homology CDS 3305630 3306283 . - 0 ID=cds3478;Parent=gene3554;Dbxref=Genbank:WP_001300411.1;Name=WP_001300411.1;gbkey=CDS;product=enhancing lycopene biosynthesis protein 2;protein_id=WP_001300411.1;transl_table=11 NC_008258.1 RefSeq gene 3306513 3308849 . - . ID=gene3555;Name=SFV_RS17870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17870;old_locus_tag=SFV_3240 NC_008258.1 Protein Homology CDS 3306513 3308849 . - 0 ID=cds3479;Parent=gene3555;Dbxref=Genbank:WP_000809774.1;Name=WP_000809774.1;Note=sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon%3B hybrid sensory histidine kinase in two-component regulatory system with ArcA;gbkey=CDS;product=PAS domain-containing two-component system sensor histidine kinase/response regulator;protein_id=WP_000809774.1;transl_table=11 NC_008258.1 RefSeq gene 3308945 3309874 . - . ID=gene3556;Name=SFV_RS17875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17875;old_locus_tag=SFV_3241 NC_008258.1 Protein Homology CDS 3308945 3309874 . - 0 ID=cds3480;Parent=gene3556;Dbxref=Genbank:WP_005050728.1;Name=WP_005050728.1;gbkey=CDS;product=radical SAM protein;protein_id=WP_005050728.1;transl_table=11 NC_008258.1 RefSeq gene 3310549 3315009 . + . ID=gene3557;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=SFV_RS17880;old_locus_tag=SFV_3242 NC_008258.1 Protein Homology CDS 3310549 3315009 . + 0 ID=cds3481;Parent=gene3557;Dbxref=Genbank:WP_005105927.1;Name=WP_005105927.1;Note=catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate;gbkey=CDS;gene=gltB;product=glutamate synthase subunit alpha;protein_id=WP_005105927.1;transl_table=11 NC_008258.1 RefSeq gene 3315022 3316440 . + . ID=gene3558;Name=SFV_RS17885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17885;old_locus_tag=SFV_3243 NC_008258.1 Protein Homology CDS 3315022 3316440 . + 0 ID=cds3482;Parent=gene3558;Dbxref=Genbank:WP_000081699.1;Name=WP_000081699.1;gbkey=CDS;product=glutamate synthase subunit beta;protein_id=WP_000081699.1;transl_table=11 NC_008258.1 RefSeq gene 3316624 3317028 . + . ID=gene3559;Name=SFV_RS17890;end_range=3317028,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS17890;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3316624 3317028 . + 0 ID=cds3483;Parent=gene3559;end_range=3317028,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3317110 3318379 . + . ID=id529;gbkey=repeat_region NC_008258.1 RefSeq region 3317113 3318376 . + . ID=id530;gbkey=mobile_element NC_008258.1 RefSeq gene 3317177 3317479 . + . ID=gene3560;Name=SFV_RS17895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17895;old_locus_tag=SFV_3244 NC_008258.1 Protein Homology CDS 3317177 3317479 . + 0 ID=cds3484;Parent=gene3560;Dbxref=Genbank:WP_005087094.1;Name=WP_005087094.1;gbkey=CDS;product=transposase;protein_id=WP_005087094.1;transl_table=11 NC_008258.1 RefSeq gene 3317620 3318333 . + . ID=gene3561;Name=SFV_RS17900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17900;old_locus_tag=SFV_3245 NC_008258.1 Protein Homology CDS 3317620 3318333 . + 0 ID=cds3485;Parent=gene3561;Dbxref=Genbank:WP_000940368.1;Name=WP_000940368.1;gbkey=CDS;product=transposase;protein_id=WP_000940368.1;transl_table=11 NC_008258.1 RefSeq gene 3318386 3318691 . + . ID=gene3562;Name=SFV_RS17905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17905 NC_008258.1 Protein Homology CDS 3318386 3318691 . + 0 ID=cds3486;Parent=gene3562;Dbxref=Genbank:WP_000639208.1;Name=WP_000639208.1;gbkey=CDS;product=transposase;protein_id=WP_000639208.1;transl_table=11 NC_008258.1 RefSeq gene 3318767 3319231 . - . ID=gene3563;Name=SFV_RS17910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17910;old_locus_tag=SFV_3246 NC_008258.1 Protein Homology CDS 3318767 3319231 . - 0 ID=cds3487;Parent=gene3563;Dbxref=Genbank:WP_000979880.1;Name=WP_000979880.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000979880.1;transl_table=11 NC_008258.1 RefSeq gene 3319228 3320103 . - . ID=gene3564;Name=SFV_RS17915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17915;old_locus_tag=SFV_3247 NC_008258.1 Protein Homology CDS 3319228 3320103 . - 0 ID=cds3488;Parent=gene3564;Dbxref=Genbank:WP_000153624.1;Name=WP_000153624.1;Note=catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein;gbkey=CDS;product=N-acetylmannosamine kinase;protein_id=WP_000153624.1;transl_table=11 NC_008258.1 RefSeq gene 3320100 3320789 . - . ID=gene3565;Name=SFV_RS17920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17920;old_locus_tag=SFV_3248 NC_008258.1 Protein Homology CDS 3320100 3320789 . - 0 ID=cds3489;Parent=gene3565;Dbxref=Genbank:WP_001300570.1;Name=WP_001300570.1;Note=Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate;gbkey=CDS;product=N-acetylmannosamine-6-phosphate 2-epimerase;protein_id=WP_001300570.1;transl_table=11 NC_008258.1 RefSeq gene 3320837 3322327 . - . ID=gene3566;Name=SFV_RS17925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17925;old_locus_tag=SFV_3249 NC_008258.1 Protein Homology CDS 3320837 3322327 . - 0 ID=cds3490;Parent=gene3566;Dbxref=Genbank:WP_000108459.1;Name=WP_000108459.1;gbkey=CDS;product=sialic acid transporter;protein_id=WP_000108459.1;transl_table=11 NC_008258.1 RefSeq gene 3322437 3323330 . - . ID=gene3567;Name=SFV_RS17930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17930;old_locus_tag=SFV_3250 NC_008258.1 Protein Homology CDS 3322437 3323330 . - 0 ID=cds3491;Parent=gene3567;Dbxref=Genbank:WP_000224714.1;Name=WP_000224714.1;Note=catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid;gbkey=CDS;product=N-acetylneuraminate lyase;protein_id=WP_000224714.1;transl_table=11 NC_008258.1 RefSeq gene 3323452 3324243 . - . ID=gene3568;Name=SFV_RS17935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17935;old_locus_tag=SFV_3251 NC_008258.1 Protein Homology CDS 3323452 3324243 . - 0 ID=cds3492;Parent=gene3568;Dbxref=Genbank:WP_000523845.1;Name=WP_000523845.1;Note=Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization;gbkey=CDS;product=transcriptional regulator NanR;protein_id=WP_000523845.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3324622 3325396 . + . ID=id531;gbkey=repeat_region NC_008258.1 RefSeq region 3324626 3325393 . + . ID=id532;gbkey=mobile_element NC_008258.1 RefSeq gene 3324875 3325378 . + . ID=gene3569;Name=SFV_RS17940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17940;old_locus_tag=SFV_3253 NC_008258.1 Protein Homology CDS 3324875 3325378 . + 0 ID=cds3493;Parent=gene3569;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 3325399 3326766 . + . ID=gene3570;Name=SFV_RS17945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17945;old_locus_tag=SFV_3254 NC_008258.1 Protein Homology CDS 3325399 3326766 . + 0 ID=cds3494;Parent=gene3570;Dbxref=Genbank:WP_000467029.1;Name=WP_000467029.1;Note=YhcL%3B uncharacterized member of the DcuC family of anaerobic dicarboxylate transporters%3B probable role in transport of carboxylates across the inner membrane from the periplasm%3B its encoding gene is not essential for growth and is probably cryptic;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_000467029.1;transl_table=11 NC_008258.1 RefSeq gene 3326809 3327306 . - . ID=gene3571;Name=SFV_RS17950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17950;old_locus_tag=SFV_3255 NC_008258.1 Protein Homology CDS 3326809 3327306 . - 0 ID=cds3495;Parent=gene3571;Dbxref=Genbank:WP_000366129.1;Name=WP_000366129.1;gbkey=CDS;product=stringent starvation protein B;protein_id=WP_000366129.1;transl_table=11 NC_008258.1 RefSeq gene 3327312 3327950 . - . ID=gene3572;Name=sspA;gbkey=Gene;gene=sspA;gene_biotype=protein_coding;locus_tag=SFV_RS17955;old_locus_tag=SFV_3256 NC_008258.1 Protein Homology CDS 3327312 3327950 . - 0 ID=cds3496;Parent=gene3572;Dbxref=Genbank:WP_000257293.1;Name=WP_000257293.1;Note=transcriptional activator%3B required for activation of bacteriophage P1 late promoter%3B induced by starvation;gbkey=CDS;gene=sspA;product=stringent starvation protein A;protein_id=WP_000257293.1;transl_table=11 NC_008258.1 RefSeq gene 3328345 3328737 . - . ID=gene3573;Name=SFV_RS17960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17960;old_locus_tag=SFV_3257 NC_008258.1 Protein Homology CDS 3328345 3328737 . - 0 ID=cds3497;Parent=gene3573;Dbxref=Genbank:WP_000829818.1;Name=WP_000829818.1;gbkey=CDS;product=30S ribosomal protein S9;protein_id=WP_000829818.1;transl_table=11 NC_008258.1 RefSeq gene 3328753 3329181 . - . ID=gene3574;Name=SFV_RS17965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17965;old_locus_tag=SFV_3258 NC_008258.1 Protein Homology CDS 3328753 3329181 . - 0 ID=cds3498;Parent=gene3574;Dbxref=Genbank:WP_000847559.1;Name=WP_000847559.1;gbkey=CDS;product=50S ribosomal protein L13;protein_id=WP_000847559.1;transl_table=11 NC_008258.1 RefSeq gene 3329400 3330527 . - . ID=gene3575;Name=SFV_RS17970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17970;old_locus_tag=SFV_3259 NC_008258.1 Protein Homology CDS 3329400 3330527 . - 0 ID=cds3499;Parent=gene3575;Dbxref=Genbank:WP_001192314.1;Name=WP_001192314.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001192314.1;transl_table=11 NC_008258.1 RefSeq gene 3330721 3331119 . + . ID=gene3576;Name=SFV_RS17975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17975;old_locus_tag=SFV_3260 NC_008258.1 Protein Homology CDS 3330721 3331119 . + 0 ID=cds3500;Parent=gene3576;Dbxref=Genbank:WP_005050708.1;Name=WP_005050708.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005050708.1;transl_table=11 NC_008258.1 RefSeq gene 3331273 3332640 . + . ID=gene3577;Name=SFV_RS17980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17980;old_locus_tag=SFV_3261 NC_008258.1 Protein Homology CDS 3331273 3332640 . + 0 ID=cds3501;Parent=gene3577;Dbxref=Genbank:WP_005105939.1;Name=WP_005105939.1;gbkey=CDS;product=serine endoprotease DegQ;protein_id=WP_005105939.1;transl_table=11 NC_008258.1 RefSeq gene 3332730 3333797 . + . ID=gene3578;Name=SFV_RS17985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17985;old_locus_tag=SFV_3262 NC_008258.1 Protein Homology CDS 3332730 3333797 . + 0 ID=cds3502;Parent=gene3578;Dbxref=Genbank:WP_000497724.1;Name=WP_000497724.1;gbkey=CDS;product=serine endoprotease;protein_id=WP_000497724.1;transl_table=11 NC_008258.1 RefSeq gene 3333859 3334797 . - . ID=gene3579;Name=SFV_RS17990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17990;old_locus_tag=SFV_3263 NC_008258.1 Protein Homology CDS 3333859 3334797 . - 0 ID=cds3503;Parent=gene3579;Dbxref=Genbank:WP_005050705.1;Name=WP_005050705.1;Note=oxidizes malate to oxaloacetate;gbkey=CDS;product=malate dehydrogenase;protein_id=WP_005050705.1;transl_table=11 NC_008258.1 RefSeq gene 3335232 3335702 . + . ID=gene3580;Name=SFV_RS17995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS17995;old_locus_tag=SFV_3264 NC_008258.1 Protein Homology CDS 3335232 3335702 . + 0 ID=cds3504;Parent=gene3580;Dbxref=Genbank:WP_001257846.1;Name=WP_001257846.1;Note=regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes;gbkey=CDS;product=arginine repressor;protein_id=WP_001257846.1;transl_table=11 NC_008258.1 RefSeq gene 3336067 3336330 . + . ID=gene3581;Name=SFV_RS18000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18000;old_locus_tag=SFV_3265 NC_008258.1 Protein Homology CDS 3336067 3336330 . + 0 ID=cds3505;Parent=gene3581;Dbxref=Genbank:WP_000695688.1;Name=WP_000695688.1;gbkey=CDS;product=membrane protein;protein_id=WP_000695688.1;transl_table=11 NC_008258.1 RefSeq gene 3336386 3336658 . - . ID=gene3582;Name=SFV_RS18005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18005;old_locus_tag=SFV_3266 NC_008258.1 Protein Homology CDS 3336386 3336658 . - 0 ID=cds3506;Parent=gene3582;Dbxref=Genbank:WP_001028769.1;Name=WP_001028769.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001028769.1;transl_table=11 NC_008258.1 RefSeq gene 3336750 3338717 . - . ID=gene3583;Name=SFV_RS18010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18010;old_locus_tag=SFV_3267 NC_008258.1 Protein Homology CDS 3336750 3338717 . - 0 ID=cds3507;Parent=gene3583;Dbxref=Genbank:WP_000510962.1;Name=WP_000510962.1;Note=with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate;gbkey=CDS;product=p-hydroxybenzoic acid efflux pump subunit AaeB;protein_id=WP_000510962.1;transl_table=11 NC_008258.1 RefSeq gene 3338723 3339655 . - . ID=gene3584;Name=SFV_RS18015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18015;old_locus_tag=SFV_3268 NC_008258.1 Protein Homology CDS 3338723 3339655 . - 0 ID=cds3508;Parent=gene3584;Dbxref=Genbank:WP_000854021.1;Name=WP_000854021.1;Note=with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid%2C 6-hydroxy-2-naphthoic and 2-hydroxycinnamate;gbkey=CDS;product=p-hydroxybenzoic acid efflux pump subunit AaeA;protein_id=WP_000854021.1;transl_table=11 NC_008258.1 RefSeq gene 3339663 3339866 . - . ID=gene3585;Name=SFV_RS18020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18020;old_locus_tag=SFV_3269 NC_008258.1 Protein Homology CDS 3339663 3339866 . - 0 ID=cds3509;Parent=gene3585;Dbxref=Genbank:WP_000051841.1;Name=WP_000051841.1;Note=membrane protein AaeX%3B the gene is a member of the aaeXAB operon;gbkey=CDS;product=protein AaeX;protein_id=WP_000051841.1;transl_table=11 NC_008258.1 RefSeq gene 3340049 3340978 . + . ID=gene3586;Name=SFV_RS18025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18025;old_locus_tag=SFV_3270 NC_008258.1 Protein Homology CDS 3340049 3340978 . + 0 ID=cds3510;Parent=gene3586;Dbxref=Genbank:WP_000440309.1;Name=WP_000440309.1;Note=for aaeXAB operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000440309.1;transl_table=11 NC_008258.1 RefSeq gene 3341106 3342551 . - . ID=gene3587;Name=tldD;gbkey=Gene;gene=tldD;gene_biotype=protein_coding;locus_tag=SFV_RS18030;old_locus_tag=SFV_3271 NC_008258.1 Protein Homology CDS 3341106 3342551 . - 0 ID=cds3511;Parent=gene3587;Dbxref=Genbank:WP_000055909.1;Name=WP_000055909.1;Note=responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17%2C an exported protein that targets the essential topoisomerase II DNA gyrase%3B degrades the E. coli plasmid F-encoded CcdA;gbkey=CDS;gene=tldD;product=protease TldD;protein_id=WP_000055909.1;transl_table=11 NC_008258.1 RefSeq gene 3342707 3346507 . - . ID=gene3588;Name=SFV_RS18035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18035;old_locus_tag=SFV_3272 NC_008258.1 Protein Homology CDS 3342707 3346507 . - 0 ID=cds3512;Parent=gene3588;Dbxref=Genbank:WP_001253599.1;Name=WP_001253599.1;gbkey=CDS;product=membrane protein;protein_id=WP_001253599.1;transl_table=11 NC_008258.1 RefSeq gene 3346575 3348044 . - . ID=gene3589;Name=SFV_RS18040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18040;old_locus_tag=SFV_3273 NC_008258.1 Protein Homology CDS 3346575 3348044 . - 0 ID=cds3513;Parent=gene3589;Dbxref=Genbank:WP_000123199.1;Name=WP_000123199.1;Note=involved in the processing of the 5'end of 16S rRNA;gbkey=CDS;product=ribonuclease G;protein_id=WP_000123199.1;transl_table=11 NC_008258.1 RefSeq gene 3348034 3348627 . - . ID=gene3590;Name=SFV_RS18045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18045;old_locus_tag=SFV_3274 NC_008258.1 Protein Homology CDS 3348034 3348627 . - 0 ID=cds3514;Parent=gene3590;Dbxref=Genbank:WP_000203090.1;Name=WP_000203090.1;Note=Maf%3B overexpression in Bacillus subtilis inhibits septation in the dividing cell;gbkey=CDS;product=septum formation inhibitor Maf;protein_id=WP_000203090.1;transl_table=11 NC_008258.1 RefSeq gene 3348636 3349124 . - . ID=gene3591;Name=SFV_RS18050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18050;old_locus_tag=SFV_3275 NC_008258.1 Protein Homology CDS 3348636 3349124 . - 0 ID=cds3515;Parent=gene3591;Dbxref=Genbank:WP_000179406.1;Name=WP_000179406.1;Note=part of cell wall structural complex MreBCD%3B transmembrane component;gbkey=CDS;product=rod shape-determining protein MreD;protein_id=WP_000179406.1;transl_table=11 NC_008258.1 RefSeq gene 3349124 3350209 . - . ID=gene3592;Name=SFV_RS18055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18055;old_locus_tag=SFV_3276 NC_008258.1 Protein Homology CDS 3349124 3350209 . - 0 ID=cds3516;Parent=gene3592;Dbxref=Genbank:WP_000802520.1;Name=WP_000802520.1;Note=in some organisms this protein is a transmembrane protein while in others it is periplasmic%3B involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall;gbkey=CDS;product=rod shape-determining protein MreC;protein_id=WP_000802520.1;transl_table=11 NC_008258.1 RefSeq gene 3350275 3351318 . - . ID=gene3593;Name=SFV_RS18060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18060;old_locus_tag=SFV_3277 NC_008258.1 Protein Homology CDS 3350275 3351318 . - 0 ID=cds3517;Parent=gene3593;Dbxref=Genbank:WP_000913396.1;Name=WP_000913396.1;gbkey=CDS;product=rod shape-determining protein MreB;protein_id=WP_000913396.1;transl_table=11 NC_008258.1 RefSeq gene 3351426 3351614 . + . ID=gene3594;Name=SFV_RS18065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18065 NC_008258.1 Protein Homology CDS 3351426 3351614 . + 0 ID=cds3518;Parent=gene3594;Dbxref=Genbank:WP_001303690.1;Name=WP_001303690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303690.1;transl_table=11 NC_008258.1 RefSeq gene 3351623 3353563 . - . ID=gene3595;Name=SFV_RS18070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18070;old_locus_tag=SFV_3278 NC_008258.1 Protein Homology CDS 3351623 3353563 . - 0 ID=cds3519;Parent=gene3595;Dbxref=Genbank:WP_001241418.1;Name=WP_001241418.1;Note=regulates the degradation of the small RNAs CsrB and CsrC%3B may function to targate RNase E to specific RNA molecules;gbkey=CDS;product=hypothetical protein;protein_id=WP_001241418.1;transl_table=11 NC_008258.1 RefSeq gene 3353715 3354689 . + . ID=gene3596;Name=SFV_RS18075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18075;old_locus_tag=SFV_3279 NC_008258.1 Protein Homology CDS 3353715 3354689 . + 0 ID=cds3520;Parent=gene3596;Dbxref=Genbank:WP_001148466.1;Name=WP_001148466.1;gbkey=CDS;product=quinone oxidoreductase;protein_id=WP_001148466.1;transl_table=11 NC_008258.1 RefSeq gene 3354747 3354848 . - . ID=gene3597;Name=SFV_RS18080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18080 NC_008258.1 Protein Homology CDS 3354747 3354848 . - 0 ID=cds3521;Parent=gene3597;Dbxref=Genbank:WP_011110633.1;Name=WP_011110633.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110633.1;transl_table=11 NC_008258.1 RefSeq gene 3354975 3355094 . + . ID=gene3598;Name=SFV_RS18085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18085 NC_008258.1 Protein Homology CDS 3354975 3355094 . + 0 ID=cds3522;Parent=gene3598;Dbxref=Genbank:WP_001061203.1;Name=WP_001061203.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001061203.1;transl_table=11 NC_008258.1 RefSeq gene 3355098 3355262 . + . ID=gene3599;Name=SFV_RS18090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18090 NC_008258.1 Protein Homology CDS 3355098 3355262 . + 0 ID=cds3523;Parent=gene3599;Dbxref=Genbank:WP_001326891.1;Name=WP_001326891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001326891.1;transl_table=11 NC_008258.1 RefSeq gene 3355667 3356137 . + . ID=gene3600;Name=SFV_RS18095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18095;old_locus_tag=SFV_3280 NC_008258.1 Protein Homology CDS 3355667 3356137 . + 0 ID=cds3524;Parent=gene3600;Dbxref=Genbank:WP_000354622.1;Name=WP_000354622.1;Note=composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex%2C the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxyl carrier protein subunit;protein_id=WP_000354622.1;transl_table=11 NC_008258.1 RefSeq gene 3356148 3357497 . + . ID=gene3601;Name=SFV_RS18100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18100;old_locus_tag=SFV_3281 NC_008258.1 Protein Homology CDS 3356148 3357497 . + 0 ID=cds3525;Parent=gene3601;Dbxref=Genbank:WP_000884655.1;Name=WP_000884655.1;Note=an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase%2C an enzyme that catalyzes the formation of malonyl-CoA%2C which in turn controls the rate of fatty acid metabolism;gbkey=CDS;product=acetyl-CoA carboxylase biotin carboxylase subunit;protein_id=WP_000884655.1;transl_table=11 NC_008258.1 RefSeq gene 3357606 3357848 . + . ID=gene3602;Name=SFV_RS18105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18105;old_locus_tag=SFV_3282 NC_008258.1 Protein Homology CDS 3357606 3357848 . + 0 ID=cds3526;Parent=gene3602;Dbxref=Genbank:WP_000381174.1;Name=WP_000381174.1;gbkey=CDS;product=membrane protein;protein_id=WP_000381174.1;transl_table=11 NC_008258.1 RefSeq gene 3357838 3359289 . + . ID=gene3603;Name=panF;gbkey=Gene;gene=panF;gene_biotype=protein_coding;locus_tag=SFV_RS18110;old_locus_tag=SFV_3283 NC_008258.1 Protein Homology CDS 3357838 3359289 . + 0 ID=cds3527;Parent=gene3603;Dbxref=Genbank:WP_001175725.1;Name=WP_001175725.1;Note=mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions%3B member of SSS family of sodium/solute symporters%3B the imported panthothenate is phosphorylated by panthothenate kinase;gbkey=CDS;gene=panF;product=sodium:pantothenate symporter;protein_id=WP_001175725.1;transl_table=11 NC_008258.1 RefSeq gene 3359301 3360182 . + . ID=gene3604;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=SFV_RS18115;old_locus_tag=SFV_3284 NC_008258.1 Protein Homology CDS 3359301 3360182 . + 0 ID=cds3528;Parent=gene3604;Dbxref=Genbank:WP_001145827.1;Name=WP_001145827.1;Note=methylates ribosomal protein L11 at multiple amino acid positions%3B mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype;gbkey=CDS;gene=prmA;product=ribosomal protein L11 methyltransferase;protein_id=WP_001145827.1;transl_table=11 NC_008258.1 RefSeq gene 3360511 3361476 . + . ID=gene3605;Name=SFV_RS18120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18120;old_locus_tag=SFV_3285 NC_008258.1 Protein Homology CDS 3360511 3361476 . + 0 ID=cds3529;Parent=gene3605;Dbxref=Genbank:WP_001219649.1;Name=WP_001219649.1;gbkey=CDS;product=tRNA-dihydrouridine synthase B;protein_id=WP_001219649.1;transl_table=11 NC_008258.1 RefSeq gene 3361502 3361798 . + . ID=gene3606;Name=fis;gbkey=Gene;gene=fis;gene_biotype=protein_coding;locus_tag=SFV_RS18125;old_locus_tag=SFV_3286 NC_008258.1 Protein Homology CDS 3361502 3361798 . + 0 ID=cds3530;Parent=gene3606;Dbxref=Genbank:WP_000462905.1;Name=WP_000462905.1;Note=Stimulates excision of phage lambda%3B affects Mu development%3B acts as an activator of rRNA and iRNA transcription;gbkey=CDS;gene=fis;product=Fis family transcriptional regulator;protein_id=WP_000462905.1;transl_table=11 NC_008258.1 RefSeq gene 3361884 3362768 . + . ID=gene3607;Name=SFV_RS18130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18130;old_locus_tag=SFV_3287 NC_008258.1 Protein Homology CDS 3361884 3362768 . + 0 ID=cds3531;Parent=gene3607;Dbxref=Genbank:WP_001258883.1;Name=WP_001258883.1;gbkey=CDS;product=methyltransferase;protein_id=WP_001258883.1;transl_table=11 NC_008258.1 RefSeq gene 3362852 3363052 . + . ID=gene3608;Name=SFV_RS18135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18135 NC_008258.1 Protein Homology CDS 3362852 3363052 . + 0 ID=cds3532;Parent=gene3608;Dbxref=Genbank:WP_024259309.1;Name=WP_024259309.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024259309.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3363026 3363805 . + . ID=id533;gbkey=repeat_region NC_008258.1 RefSeq region 3363031 3363798 . - . ID=id534;gbkey=mobile_element NC_008258.1 RefSeq gene 3363046 3363549 . - . ID=gene3609;Name=SFV_RS18140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18140;old_locus_tag=SFV_3288 NC_008258.1 Protein Homology CDS 3363046 3363549 . - 0 ID=cds3533;Parent=gene3609;Dbxref=Genbank:WP_005047028.1;Name=WP_005047028.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005047028.1;transl_table=11 NC_008258.1 RefSeq gene 3363624 3363950 . + . ID=gene3610;Name=SFV_RS18145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18145;old_locus_tag=SFV_3289 NC_008258.1 Protein Homology CDS 3363624 3363950 . + 0 ID=cds3534;Parent=gene3610;Dbxref=Genbank:WP_005050690.1;Name=WP_005050690.1;gbkey=CDS;product=transposase;protein_id=WP_005050690.1;transl_table=11 NC_008258.1 RefSeq gene 3363979 3365004 . + . ID=gene3611;Name=SFV_RS18150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18150;old_locus_tag=SFV_3290 NC_008258.1 Protein Homology CDS 3363979 3365004 . + 0 ID=cds3535;Parent=gene3611;Dbxref=Genbank:WP_000738593.1;Name=WP_000738593.1;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_000738593.1;transl_table=11 NC_008258.1 RefSeq gene 3365072 3366242 . + . ID=gene3612;Name=SFV_RS18155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS18155;pseudo=true NC_008258.1 Protein Homology CDS 3365072 3366242 . + 0 ID=cds3536;Parent=gene3612;exception=annotated by transcript or proteomic data;gbkey=CDS;product=amino acid ABC transporter permease;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3366252 3367355 . + . ID=gene3613;Name=SFV_RS18160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18160;old_locus_tag=SFV_3292 NC_008258.1 Protein Homology CDS 3366252 3367355 . + 0 ID=cds3537;Parent=gene3613;Dbxref=Genbank:WP_005105955.1;Name=WP_005105955.1;gbkey=CDS;product=amino acid ABC transporter permease;protein_id=WP_005105955.1;transl_table=11 NC_008258.1 RefSeq gene 3367363 3368121 . + . ID=gene3614;Name=SFV_RS18165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18165;old_locus_tag=SFV_3293 NC_008258.1 Protein Homology CDS 3367363 3368121 . + 0 ID=cds3538;Parent=gene3614;Dbxref=Genbank:WP_000078314.1;Name=WP_000078314.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000078314.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3368141 3368286 . + . ID=id535;gbkey=repeat_region NC_008258.1 RefSeq gene 3368184 3368299 . - . ID=gene3615;Name=SFV_RS18170;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS18170;old_locus_tag=SFV_3294 NC_008258.1 cmsearch rRNA 3368184 3368299 . - . ID=rna76;Parent=gene3615;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 3368184 3368299 . - . ID=id536;Parent=rna76;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 3368339 3368414 . - . ID=gene3616;Name=SFV_RS18175;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS18175;old_locus_tag=SFV_3295 NC_008258.1 tRNAscan-SE tRNA 3368339 3368414 . - . ID=rna77;Parent=gene3616;anticodon=(pos:complement(3368379..3368381));gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 3368339 3368414 . - . ID=id537;Parent=rna77;anticodon=(pos:complement(3368379..3368381));gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq repeat_region 3368421 3373675 . + . ID=id538;gbkey=repeat_region NC_008258.1 RefSeq gene 3368429 3368544 . - . ID=gene3617;Name=SFV_RS18180;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS18180;old_locus_tag=SFV_3296 NC_008258.1 cmsearch rRNA 3368429 3368544 . - . ID=rna78;Parent=gene3617;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 3368429 3368544 . - . ID=id539;Parent=rna78;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 3368628 3371552 . - . ID=gene3618;Name=SFV_RS18185;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS18185;old_locus_tag=SFV_3297 NC_008258.1 RefSeq rRNA 3368628 3371552 . - . ID=rna79;Parent=gene3618;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 3368628 3371552 . - . ID=id540;Parent=rna79;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 3371737 3371812 . - . ID=gene3619;Name=SFV_RS18190;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS18190;old_locus_tag=SFV_3298 NC_008258.1 tRNAscan-SE tRNA 3371737 3371812 . - . ID=rna80;Parent=gene3619;anticodon=(pos:complement(3371776..3371778));gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 3371737 3371812 . - . ID=id541;Parent=rna80;anticodon=(pos:complement(3371776..3371778));gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 3371886 3373441 . - . ID=gene3620;Name=SFV_RS18195;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS18195;old_locus_tag=SFV_3299 NC_008258.1 RefSeq rRNA 3371886 3373441 . - . ID=rna81;Parent=gene3620;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 3371886 3373441 . - . ID=id542;Parent=rna81;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq gene 3373909 3374463 . + . ID=gene3621;Name=SFV_RS18200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18200 NC_008258.1 Protein Homology CDS 3373909 3374463 . + 0 ID=cds3539;Parent=gene3621;Dbxref=Genbank:WP_001286216.1;Name=WP_001286216.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001286216.1;transl_table=11 NC_008258.1 RefSeq gene 3374439 3374696 . - . ID=gene3622;Name=SFV_RS18205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18205;old_locus_tag=SFV_3301 NC_008258.1 Protein Homology CDS 3374439 3374696 . - 0 ID=cds3540;Parent=gene3622;Dbxref=Genbank:WP_001070563.1;Name=WP_001070563.1;gbkey=CDS;product=DUF1488 domain-containing protein;protein_id=WP_001070563.1;transl_table=11 NC_008258.1 RefSeq gene 3374693 3375511 . - . ID=gene3623;Name=SFV_RS18210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18210;old_locus_tag=SFV_3302 NC_008258.1 Protein Homology CDS 3374693 3375511 . - 0 ID=cds3541;Parent=gene3623;Dbxref=Genbank:WP_000451223.1;Name=WP_000451223.1;gbkey=CDS;product=shikimate dehydrogenase (NADP+);protein_id=WP_000451223.1;transl_table=11 NC_008258.1 RefSeq gene 3375516 3376088 . - . ID=gene3624;Name=SFV_RS18215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18215;old_locus_tag=SFV_3303 NC_008258.1 Protein Homology CDS 3375516 3376088 . - 0 ID=cds3542;Parent=gene3624;Dbxref=Genbank:WP_005050640.1;Name=WP_005050640.1;Note=involved in the biosynthesis of the threonylcarbamoyladenosine (t6A) residue at position 37 of ANN-decoding tRNAs;gbkey=CDS;product=threonylcarbamoyl-AMP synthase;protein_id=WP_005050640.1;transl_table=11 NC_008258.1 RefSeq gene 3376093 3376635 . - . ID=gene3625;Name=SFV_RS18220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18220 NC_008258.1 Protein Homology CDS 3376093 3376635 . - 0 ID=cds3543;Parent=gene3625;Dbxref=Genbank:WP_001129726.1;Name=WP_001129726.1;gbkey=CDS;product=DNA topoisomerase;protein_id=WP_001129726.1;transl_table=11 NC_008258.1 RefSeq gene 3376664 3377137 . - . ID=gene3626;Name=SFV_RS18225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18225;old_locus_tag=SFV_3304 NC_008258.1 Protein Homology CDS 3376664 3377137 . - 0 ID=cds3544;Parent=gene3626;Dbxref=Genbank:WP_000460680.1;Name=WP_000460680.1;gbkey=CDS;product=protein Smg;protein_id=WP_000460680.1;transl_table=11 NC_008258.1 RefSeq gene 3377109 3378233 . - . ID=gene3627;Name=SFV_RS18230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18230;old_locus_tag=SFV_3305 NC_008258.1 Protein Homology CDS 3377109 3378233 . - 0 ID=cds3545;Parent=gene3627;Dbxref=Genbank:WP_000227557.1;Name=WP_000227557.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000227557.1;transl_table=11 NC_008258.1 RefSeq gene 3378398 3378907 . + . ID=gene3628;Name=SFV_RS18235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18235;old_locus_tag=SFV_3306 NC_008258.1 Protein Homology CDS 3378398 3378907 . + 0 ID=cds3546;Parent=gene3628;Dbxref=Genbank:WP_000114986.1;Name=WP_000114986.1;gbkey=CDS;product=peptide deformylase;protein_id=WP_000114986.1;transl_table=11 NC_008258.1 RefSeq gene 3378922 3379869 . + . ID=gene3629;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=SFV_RS18240;old_locus_tag=SFV_3307 NC_008258.1 Protein Homology CDS 3378922 3379869 . + 0 ID=cds3547;Parent=gene3629;Dbxref=Genbank:WP_000004428.1;Name=WP_000004428.1;Note=modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation%3B inactivation of this gene in Escherichia coli severely impairs growth;gbkey=CDS;gene=fmt;product=methionyl-tRNA formyltransferase;protein_id=WP_000004428.1;transl_table=11 NC_008258.1 RefSeq gene 3379915 3381204 . + . ID=gene3630;Name=SFV_RS18245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18245;old_locus_tag=SFV_3308 NC_008258.1 Protein Homology CDS 3379915 3381204 . + 0 ID=cds3548;Parent=gene3630;Dbxref=Genbank:WP_005103892.1;Name=WP_005103892.1;Note=catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA%3B SAM-dependent methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase B;protein_id=WP_005103892.1;transl_table=11 NC_008258.1 RefSeq gene 3381226 3382602 . + . ID=gene3631;Name=trkA;gbkey=Gene;gene=trkA;gene_biotype=protein_coding;gene_synonym=sapG;locus_tag=SFV_RS18250;old_locus_tag=SFV_3309 NC_008258.1 Protein Homology CDS 3381226 3382602 . + 0 ID=cds3549;Parent=gene3631;Dbxref=Genbank:WP_000691382.1;Name=WP_000691382.1;Note=involved in potassium uptake%3B found to be peripherally associated with the inner membrane in Escherichia coli%3B contains an NAD-binding domain;gbkey=CDS;gene=trkA;product=trk system potassium uptake protein trkA;protein_id=WP_000691382.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3382700 3385796 . + . ID=id543;gbkey=repeat_region NC_008258.1 RefSeq region 3382701 3385454 . - . ID=id544;gbkey=mobile_element NC_008258.1 RefSeq gene 3382783 3383457 . + . ID=gene3632;Name=SFV_RS18255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18255;old_locus_tag=SFV_3310 NC_008258.1 Protein Homology CDS 3382783 3383457 . + 0 ID=cds3550;Parent=gene3632;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq gene 3383454 3383801 . + . ID=gene3633;Name=SFV_RS18260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18260;old_locus_tag=SFV_3311 NC_008258.1 Protein Homology CDS 3383454 3383801 . + 0 ID=cds3551;Parent=gene3633;Dbxref=Genbank:WP_000631712.1;Name=WP_000631712.1;gbkey=CDS;product=transposase;protein_id=WP_000631712.1;transl_table=11 NC_008258.1 RefSeq gene 3383821 3385422 . + . ID=gene3634;Name=SFV_RS18265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18265;old_locus_tag=SFV_3312 NC_008258.1 Protein Homology CDS 3383821 3385422 . + 0 ID=cds3552;Parent=gene3634;Dbxref=Genbank:WP_004967149.1;Name=WP_004967149.1;gbkey=CDS;product=transposase;protein_id=WP_004967149.1;transl_table=11 NC_008258.1 RefSeq gene 3385426 3385713 . - . ID=gene3635;Name=SFV_RS18270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18270;old_locus_tag=SFV_3313 NC_008258.1 Protein Homology CDS 3385426 3385713 . - 0 ID=cds3553;Parent=gene3635;Dbxref=Genbank:WP_001088296.1;Name=WP_001088296.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001088296.1;transl_table=11 NC_008258.1 RefSeq region 3385454 3385795 . + . ID=id545;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3385883 3386266 . - . ID=gene3636;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=SFV_RS18275;old_locus_tag=SFV_3314 NC_008258.1 Protein Homology CDS 3385883 3386266 . - 0 ID=cds3554;Parent=gene3636;Dbxref=Genbank:WP_001216368.1;Name=WP_001216368.1;Note=is a component of the macrolide binding site in the peptidyl transferase center;gbkey=CDS;gene=rplQ;product=50S ribosomal protein L17;protein_id=WP_001216368.1;transl_table=11 NC_008258.1 RefSeq gene 3386307 3387296 . - . ID=gene3637;Name=SFV_RS18280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18280;old_locus_tag=SFV_3315 NC_008258.1 Protein Homology CDS 3386307 3387296 . - 0 ID=cds3555;Parent=gene3637;Dbxref=Genbank:WP_001162094.1;Name=WP_001162094.1;Note=catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme;gbkey=CDS;product=DNA-directed RNA polymerase subunit alpha;protein_id=WP_001162094.1;transl_table=11 NC_008258.1 RefSeq gene 3387322 3387942 . - . ID=gene3638;Name=SFV_RS18285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18285;old_locus_tag=SFV_3316 NC_008258.1 Protein Homology CDS 3387322 3387942 . - 0 ID=cds3556;Parent=gene3638;Dbxref=Genbank:WP_000135224.1;Name=WP_000135224.1;gbkey=CDS;product=30S ribosomal protein S4;protein_id=WP_000135224.1;transl_table=11 NC_008258.1 RefSeq gene 3387976 3388365 . - . ID=gene3639;Name=SFV_RS18290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18290;old_locus_tag=SFV_3317 NC_008258.1 Protein Homology CDS 3387976 3388365 . - 0 ID=cds3557;Parent=gene3639;Dbxref=Genbank:WP_001029684.1;Name=WP_001029684.1;gbkey=CDS;product=30S ribosomal protein S11;protein_id=WP_001029684.1;transl_table=11 NC_008258.1 RefSeq gene 3388382 3388738 . - . ID=gene3640;Name=SFV_RS18295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18295;old_locus_tag=SFV_3318 NC_008258.1 Protein Homology CDS 3388382 3388738 . - 0 ID=cds3558;Parent=gene3640;Dbxref=Genbank:WP_000090775.1;Name=WP_000090775.1;gbkey=CDS;product=30S ribosomal protein S13;protein_id=WP_000090775.1;transl_table=11 NC_008258.1 RefSeq gene 3388885 3389001 . - . ID=gene3641;Name=SFV_RS18300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18300;old_locus_tag=SFV_3319 NC_008258.1 Protein Homology CDS 3388885 3389001 . - 0 ID=cds3559;Parent=gene3641;Dbxref=Genbank:WP_000868187.1;Name=WP_000868187.1;gbkey=CDS;product=50S ribosomal protein L36;protein_id=WP_000868187.1;transl_table=11 NC_008258.1 RefSeq gene 3389033 3390364 . - . ID=gene3642;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=SFV_RS18305;old_locus_tag=SFV_3320 NC_008258.1 Protein Homology CDS 3389033 3390364 . - 0 ID=cds3560;Parent=gene3642;Dbxref=Genbank:WP_001118861.1;Name=WP_001118861.1;Note=forms heterotrimeric complex in the membrane%3B in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG%3B the SecG subunit is not essential%3B in bacteria translocation is driven via the SecA ATPase;gbkey=CDS;gene=secY;product=protein translocase subunit SecY;protein_id=WP_001118861.1;transl_table=11 NC_008258.1 RefSeq gene 3390372 3390806 . - . ID=gene3643;Name=SFV_RS18310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18310;old_locus_tag=SFV_3321 NC_008258.1 Protein Homology CDS 3390372 3390806 . - 0 ID=cds3561;Parent=gene3643;Dbxref=Genbank:WP_001238917.1;Name=WP_001238917.1;gbkey=CDS;product=50S ribosomal protein L15;protein_id=WP_001238917.1;transl_table=11 NC_008258.1 RefSeq gene 3390810 3390989 . - . ID=gene3644;Name=rpmD;gbkey=Gene;gene=rpmD;gene_biotype=protein_coding;locus_tag=SFV_RS18315;old_locus_tag=SFV_3322 NC_008258.1 Protein Homology CDS 3390810 3390989 . - 0 ID=cds3562;Parent=gene3644;Dbxref=Genbank:WP_001140433.1;Name=WP_001140433.1;Note=L30 binds domain II of the 23S rRNA and the 5S rRNA%3B similar to eukaryotic protein L7;gbkey=CDS;gene=rpmD;product=50S ribosomal protein L30;protein_id=WP_001140433.1;transl_table=11 NC_008258.1 RefSeq gene 3390993 3391496 . - . ID=gene3645;Name=SFV_RS18320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18320;old_locus_tag=SFV_3323 NC_008258.1 Protein Homology CDS 3390993 3391496 . - 0 ID=cds3563;Parent=gene3645;Dbxref=Genbank:WP_000940121.1;Name=WP_000940121.1;gbkey=CDS;product=30S ribosomal protein S5;protein_id=WP_000940121.1;transl_table=11 NC_008258.1 RefSeq gene 3391511 3391864 . - . ID=gene3646;Name=SFV_RS18325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18325;old_locus_tag=SFV_3324 NC_008258.1 Protein Homology CDS 3391511 3391864 . - 0 ID=cds3564;Parent=gene3646;Dbxref=Genbank:WP_000358960.1;Name=WP_000358960.1;gbkey=CDS;product=50S ribosomal protein L18;protein_id=WP_000358960.1;transl_table=11 NC_008258.1 RefSeq gene 3391874 3392407 . - . ID=gene3647;Name=SFV_RS18330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18330;old_locus_tag=SFV_3325 NC_008258.1 Protein Homology CDS 3391874 3392407 . - 0 ID=cds3565;Parent=gene3647;Dbxref=Genbank:WP_000091945.1;Name=WP_000091945.1;gbkey=CDS;product=50S ribosomal protein L6;protein_id=WP_000091945.1;transl_table=11 NC_008258.1 RefSeq gene 3392420 3392812 . - . ID=gene3648;Name=SFV_RS18335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18335;old_locus_tag=SFV_3326 NC_008258.1 Protein Homology CDS 3392420 3392812 . - 0 ID=cds3566;Parent=gene3648;Dbxref=Genbank:WP_000062611.1;Name=WP_000062611.1;gbkey=CDS;product=30S ribosomal protein S8;protein_id=WP_000062611.1;transl_table=11 NC_008258.1 RefSeq gene 3392846 3393151 . - . ID=gene3649;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=SFV_RS18340;old_locus_tag=SFV_3327 NC_008258.1 Protein Homology CDS 3392846 3393151 . - 0 ID=cds3567;Parent=gene3649;Dbxref=Genbank:WP_001118930.1;Name=WP_001118930.1;Note=located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit%3B similar to what is observed with proteins L31 and L33%2C some proteins in this family contain CXXC motifs that are involved in zinc binding%3B if two copies are present in a genome%2C then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc%3B the proteins in this group do not appear to have the zinc-binding motif;gbkey=CDS;gene=rpsN;product=30S ribosomal protein S14;protein_id=WP_001118930.1;transl_table=11 NC_008258.1 RefSeq gene 3393166 3393705 . - . ID=gene3650;Name=SFV_RS18345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18345;old_locus_tag=SFV_3328 NC_008258.1 Protein Homology CDS 3393166 3393705 . - 0 ID=cds3568;Parent=gene3650;Dbxref=Genbank:WP_001096200.1;Name=WP_001096200.1;gbkey=CDS;product=50S ribosomal protein L5;protein_id=WP_001096200.1;transl_table=11 NC_008258.1 RefSeq gene 3393720 3394034 . - . ID=gene3651;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=SFV_RS18350;old_locus_tag=SFV_3329 NC_008258.1 Protein Homology CDS 3393720 3394034 . - 0 ID=cds3569;Parent=gene3651;Dbxref=Genbank:WP_000729185.1;Name=WP_000729185.1;Note=assembly initiator protein%3B binds to 5' end of 23S rRNA and nucleates assembly of the 50S%3B surrounds polypeptide exit tunnel;gbkey=CDS;gene=rplX;product=50S ribosomal protein L24;protein_id=WP_000729185.1;transl_table=11 NC_008258.1 RefSeq gene 3394045 3394416 . - . ID=gene3652;Name=SFV_RS18355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18355;old_locus_tag=SFV_3330 NC_008258.1 Protein Homology CDS 3394045 3394416 . - 0 ID=cds3570;Parent=gene3652;Dbxref=Genbank:WP_000613955.1;Name=WP_000613955.1;gbkey=CDS;product=50S ribosomal protein L14;protein_id=WP_000613955.1;transl_table=11 NC_008258.1 RefSeq gene 3394581 3394835 . - . ID=gene3653;Name=SFV_RS18360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18360;old_locus_tag=SFV_3331 NC_008258.1 Protein Homology CDS 3394581 3394835 . - 0 ID=cds3571;Parent=gene3653;Dbxref=Genbank:WP_000130100.1;Name=WP_000130100.1;gbkey=CDS;product=30S ribosomal protein S17;protein_id=WP_000130100.1;transl_table=11 NC_008258.1 RefSeq gene 3394835 3395026 . - . ID=gene3654;Name=SFV_RS18365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18365;old_locus_tag=SFV_3332 NC_008258.1 Protein Homology CDS 3394835 3395026 . - 0 ID=cds3572;Parent=gene3654;Dbxref=Genbank:WP_000644741.1;Name=WP_000644741.1;Note=one of the stabilizing components for the large ribosomal subunit;gbkey=CDS;product=50S ribosomal protein L29;protein_id=WP_000644741.1;transl_table=11 NC_008258.1 RefSeq gene 3395026 3395436 . - . ID=gene3655;Name=SFV_RS18370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18370;old_locus_tag=SFV_3333 NC_008258.1 Protein Homology CDS 3395026 3395436 . - 0 ID=cds3573;Parent=gene3655;Dbxref=Genbank:WP_000941212.1;Name=WP_000941212.1;gbkey=CDS;product=50S ribosomal protein L16;protein_id=WP_000941212.1;transl_table=11 NC_008258.1 RefSeq gene 3395449 3396150 . - . ID=gene3656;Name=SFV_RS18375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18375;old_locus_tag=SFV_3334 NC_008258.1 Protein Homology CDS 3395449 3396150 . - 0 ID=cds3574;Parent=gene3656;Dbxref=Genbank:WP_000529945.1;Name=WP_000529945.1;gbkey=CDS;product=30S ribosomal protein S3;protein_id=WP_000529945.1;transl_table=11 NC_008258.1 RefSeq gene 3396168 3396500 . - . ID=gene3657;Name=SFV_RS18380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18380;old_locus_tag=SFV_3335 NC_008258.1 Protein Homology CDS 3396168 3396500 . - 0 ID=cds3575;Parent=gene3657;Dbxref=Genbank:WP_000447531.1;Name=WP_000447531.1;gbkey=CDS;product=50S ribosomal protein L22;protein_id=WP_000447531.1;transl_table=11 NC_008258.1 RefSeq gene 3396515 3396793 . - . ID=gene3658;Name=SFV_RS18385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18385 NC_008258.1 Protein Homology CDS 3396515 3396793 . - 0 ID=cds3576;Parent=gene3658;Dbxref=Genbank:WP_001138117.1;Name=WP_001138117.1;gbkey=CDS;product=30S ribosomal protein S19;protein_id=WP_001138117.1;transl_table=11 NC_008258.1 RefSeq gene 3396810 3397631 . - . ID=gene3659;Name=SFV_RS18390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18390;old_locus_tag=SFV_3336 NC_008258.1 Protein Homology CDS 3396810 3397631 . - 0 ID=cds3577;Parent=gene3659;Dbxref=Genbank:WP_000301864.1;Name=WP_000301864.1;gbkey=CDS;product=50S ribosomal protein L2;protein_id=WP_000301864.1;transl_table=11 NC_008258.1 RefSeq gene 3397649 3397951 . - . ID=gene3660;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=SFV_RS18395;old_locus_tag=SFV_3337 NC_008258.1 Protein Homology CDS 3397649 3397951 . - 0 ID=cds3578;Parent=gene3660;Dbxref=Genbank:WP_000617544.1;Name=WP_000617544.1;Note=binds third domain of 23S rRNA and protein L29%3B part of exit tunnel;gbkey=CDS;gene=rplW;product=50S ribosomal protein L23;protein_id=WP_000617544.1;transl_table=11 NC_008258.1 RefSeq gene 3397948 3398553 . - . ID=gene3661;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=SFV_RS18400;old_locus_tag=SFV_3338 NC_008258.1 Protein Homology CDS 3397948 3398553 . - 0 ID=cds3579;Parent=gene3661;Dbxref=Genbank:WP_000424397.1;Name=WP_000424397.1;Note=L4 is important during the early stages of 50S assembly%3B it initially binds near the 5' end of the 23S rRNA;gbkey=CDS;gene=rplD;product=50S ribosomal protein L4;protein_id=WP_000424397.1;transl_table=11 NC_008258.1 RefSeq gene 3398564 3399193 . - . ID=gene3662;Name=SFV_RS18405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18405;old_locus_tag=SFV_3339 NC_008258.1 Protein Homology CDS 3398564 3399193 . - 0 ID=cds3580;Parent=gene3662;Dbxref=Genbank:WP_000579833.1;Name=WP_000579833.1;gbkey=CDS;product=50S ribosomal protein L3;protein_id=WP_000579833.1;transl_table=11 NC_008258.1 RefSeq gene 3399226 3399537 . - . ID=gene3663;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;gene_synonym=nusE;locus_tag=SFV_RS18410;old_locus_tag=SFV_3340 NC_008258.1 Protein Homology CDS 3399226 3399537 . - 0 ID=cds3581;Parent=gene3663;Dbxref=Genbank:WP_001181004.1;Name=WP_001181004.1;Note=NusE%3B involved in assembly of the 30S subunit%3B in the ribosome%2C this protein is involved in the binding of tRNA%3B in Escherichia coli this protein was also found to be involved in transcription antitermination%3B NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination%3B binding of NusB/S10 to boxA nucleates assembly of the antitermination complex;gbkey=CDS;gene=rpsJ;product=30S ribosomal protein S10;protein_id=WP_001181004.1;transl_table=11 NC_008258.1 RefSeq gene 3399666 3399827 . - . ID=gene3664;Name=SFV_RS18415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18415 NC_008258.1 Protein Homology CDS 3399666 3399827 . - 0 ID=cds3582;Parent=gene3664;Dbxref=Genbank:WP_000786137.1;Name=WP_000786137.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000786137.1;transl_table=11 NC_008258.1 RefSeq gene 3399916 3400383 . + . ID=gene3665;Name=SFV_RS18420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18420;old_locus_tag=SFV_3341 NC_008258.1 Protein Homology CDS 3399916 3400383 . + 0 ID=cds3583;Parent=gene3665;Dbxref=Genbank:WP_000381748.1;Name=WP_000381748.1;gbkey=CDS;product=type 4 prepilin peptidase 1;protein_id=WP_000381748.1;transl_table=11 NC_008258.1 RefSeq gene 3400380 3400856 . - . ID=gene3666;Name=SFV_RS18425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18425;old_locus_tag=SFV_3342 NC_008258.1 Protein Homology CDS 3400380 3400856 . - 0 ID=cds3584;Parent=gene3666;Dbxref=Genbank:WP_000675515.1;Name=WP_000675515.1;Note=iron storage protein;gbkey=CDS;product=bacterioferritin;protein_id=WP_000675515.1;transl_table=11 NC_008258.1 RefSeq gene 3400929 3401123 . - . ID=gene3667;Name=SFV_RS18430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18430;old_locus_tag=SFV_3343 NC_008258.1 Protein Homology CDS 3400929 3401123 . - 0 ID=cds3585;Parent=gene3667;Dbxref=Genbank:WP_000289090.1;Name=WP_000289090.1;gbkey=CDS;product=bacterioferritin-associated ferredoxin;protein_id=WP_000289090.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3401304 3402489 . + . ID=id546;gbkey=repeat_region NC_008258.1 RefSeq gene 3401306 3402490 . - . ID=gene3668;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=SFV_RS18435;old_locus_tag=SFV_3344 NC_008258.1 Protein Homology CDS 3401306 3402490 . - 0 ID=cds3586;Parent=gene3668;Dbxref=Genbank:WP_000031786.1;Name=WP_000031786.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=elongation factor Tu;protein_id=WP_000031786.1;transl_table=11 NC_008258.1 RefSeq gene 3402561 3404675 . - . ID=gene3669;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=SFV_RS18440;old_locus_tag=SFV_3345 NC_008258.1 Protein Homology CDS 3402561 3404675 . - 0 ID=cds3587;Parent=gene3669;Dbxref=Genbank:WP_000124706.1;Name=WP_000124706.1;Note=EF-G%3B promotes GTP-dependent translocation of the ribosome during translation%3B many organisms have multiple copies of this gene;gbkey=CDS;gene=fusA;product=elongation factor G;protein_id=WP_000124706.1;transl_table=11 NC_008258.1 RefSeq gene 3404703 3405242 . - . ID=gene3670;Name=SFV_RS18445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18445;old_locus_tag=SFV_3346 NC_008258.1 Protein Homology CDS 3404703 3405242 . - 0 ID=cds3588;Parent=gene3670;Dbxref=Genbank:WP_001138044.1;Name=WP_001138044.1;gbkey=CDS;product=30S ribosomal protein S7;protein_id=WP_001138044.1;transl_table=11 NC_008258.1 RefSeq gene 3405339 3405713 . - . ID=gene3671;Name=SFV_RS18450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18450;old_locus_tag=SFV_3347 NC_008258.1 Protein Homology CDS 3405339 3405713 . - 0 ID=cds3589;Parent=gene3671;Dbxref=Genbank:WP_000246815.1;Name=WP_000246815.1;gbkey=CDS;product=30S ribosomal protein S12;protein_id=WP_000246815.1;transl_table=11 NC_008258.1 RefSeq gene 3405839 3406126 . - . ID=gene3672;Name=SFV_RS18455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18455;old_locus_tag=SFV_3348 NC_008258.1 Protein Homology CDS 3405839 3406126 . - 0 ID=cds3590;Parent=gene3672;Dbxref=Genbank:WP_000903372.1;Name=WP_000903372.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=protein TusB;protein_id=WP_000903372.1;transl_table=11 NC_008258.1 RefSeq gene 3406134 3406493 . - . ID=gene3673;Name=SFV_RS18460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18460;old_locus_tag=SFV_3349 NC_008258.1 Protein Homology CDS 3406134 3406493 . - 0 ID=cds3591;Parent=gene3673;Dbxref=Genbank:WP_000820723.1;Name=WP_000820723.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur transfer that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=protein TusC;protein_id=WP_000820723.1;transl_table=11 NC_008258.1 RefSeq gene 3406493 3406879 . - . ID=gene3674;Name=SFV_RS18465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18465;old_locus_tag=SFV_3350 NC_008258.1 Protein Homology CDS 3406493 3406879 . - 0 ID=cds3592;Parent=gene3674;Dbxref=Genbank:WP_001209706.1;Name=WP_001209706.1;Note=in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs;gbkey=CDS;product=sulfurtransferase TusD;protein_id=WP_001209706.1;transl_table=11 NC_008258.1 RefSeq gene 3406879 3407601 . - . ID=gene3675;Name=SFV_RS18470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18470;old_locus_tag=SFV_3351 NC_008258.1 Protein Homology CDS 3406879 3407601 . - 0 ID=cds3593;Parent=gene3675;Dbxref=Genbank:WP_011587272.1;Name=WP_011587272.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011587272.1;transl_table=11 NC_008258.1 RefSeq gene 3407768 3408580 . - . ID=gene3676;Name=SFV_RS18475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18475;old_locus_tag=SFV_3352 NC_008258.1 Protein Homology CDS 3407768 3408580 . - 0 ID=cds3594;Parent=gene3676;Dbxref=Genbank:WP_000838272.1;Name=WP_000838272.1;Note=rotamase;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000838272.1;transl_table=11 NC_008258.1 RefSeq gene 3408801 3409019 . + . ID=gene3677;Name=SFV_RS18480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18480;old_locus_tag=SFV_3353 NC_008258.1 Protein Homology CDS 3408801 3409019 . + 0 ID=cds3595;Parent=gene3677;Dbxref=Genbank:WP_001153615.1;Name=WP_001153615.1;Note=required for phi X174 lysis;gbkey=CDS;product=protein SlyX;protein_id=WP_001153615.1;transl_table=11 NC_008258.1 RefSeq gene 3409068 3409658 . - . ID=gene3678;Name=SFV_RS18485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18485;old_locus_tag=SFV_3354 NC_008258.1 Protein Homology CDS 3409068 3409658 . - 0 ID=cds3596;Parent=gene3678;Dbxref=Genbank:WP_000861334.1;Name=WP_000861334.1;Note=rotamase;gbkey=CDS;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000861334.1;transl_table=11 NC_008258.1 RefSeq gene 3409753 3409953 . - . ID=gene3679;Name=SFV_RS18490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18490;old_locus_tag=SFV_3355 NC_008258.1 Protein Homology CDS 3409753 3409953 . - 0 ID=cds3597;Parent=gene3679;Dbxref=Genbank:WP_001007729.1;Name=WP_001007729.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001007729.1;transl_table=11 NC_008258.1 RefSeq gene 3409963 3411675 . - . ID=gene3680;Name=SFV_RS18495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18495;old_locus_tag=SFV_3356 NC_008258.1 Protein Homology CDS 3409963 3411675 . - 0 ID=cds3598;Parent=gene3680;Dbxref=Genbank:WP_005105968.1;Name=WP_005105968.1;Note=involved in potassium efflux;gbkey=CDS;product=potassium transporter;protein_id=WP_005105968.1;transl_table=11 NC_008258.1 RefSeq gene 3411739 3412290 . - . ID=gene3681;Name=SFV_RS18500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18500;old_locus_tag=SFV_3357 NC_008258.1 Protein Homology CDS 3411739 3412290 . - 0 ID=cds3599;Parent=gene3681;Dbxref=Genbank:WP_001445921.1;Name=WP_001445921.1;Note=required for KefB activity;gbkey=CDS;product=glutathione-regulated potassium-efflux system ancillary protein KefG;protein_id=WP_001445921.1;transl_table=11 NC_008258.1 RefSeq gene 3412421 3414334 . + . ID=gene3682;Name=SFV_RS18505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18505;old_locus_tag=SFV_3358 NC_008258.1 Protein Homology CDS 3412421 3414334 . + 0 ID=cds3600;Parent=gene3682;Dbxref=Genbank:WP_000634826.1;Name=WP_000634826.1;gbkey=CDS;product=ABC transporter ATP-binding protein;protein_id=WP_000634826.1;transl_table=11 NC_008258.1 RefSeq gene 3414334 3415383 . + . ID=gene3683;Name=SFV_RS18510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18510;old_locus_tag=SFV_3359 NC_008258.1 Protein Homology CDS 3414334 3415383 . + 0 ID=cds3601;Parent=gene3683;Dbxref=Genbank:WP_000057407.1;Name=WP_000057407.1;gbkey=CDS;product=hydrolase;protein_id=WP_000057407.1;transl_table=11 NC_008258.1 RefSeq gene 3415350 3415568 . + . ID=gene3684;Name=SFV_RS18515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18515;old_locus_tag=SFV_3360 NC_008258.1 Protein Homology CDS 3415350 3415568 . + 0 ID=cds3602;Parent=gene3684;Dbxref=Genbank:WP_000264963.1;Name=WP_000264963.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000264963.1;transl_table=11 NC_008258.1 RefSeq gene 3415622 3416491 . + . ID=gene3685;Name=SFV_RS18520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18520;old_locus_tag=SFV_3361 NC_008258.1 Protein Homology CDS 3415622 3416491 . + 0 ID=cds3603;Parent=gene3685;Dbxref=Genbank:WP_001274680.1;Name=WP_001274680.1;gbkey=CDS;product=phosphoribulokinase;protein_id=WP_001274680.1;transl_table=11 NC_008258.1 RefSeq gene 3416546 3416950 . - . ID=gene3686;Name=SFV_RS18525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18525;old_locus_tag=SFV_3362 NC_008258.1 Protein Homology CDS 3416546 3416950 . - 0 ID=cds3604;Parent=gene3686;Dbxref=Genbank:WP_001148908.1;Name=WP_001148908.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001148908.1;transl_table=11 NC_008258.1 RefSeq gene 3417030 3417245 . + . ID=gene3687;Name=SFV_RS18530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18530 NC_008258.1 Protein Homology CDS 3417030 3417245 . + 0 ID=cds3605;Parent=gene3687;Dbxref=Genbank:WP_001303699.1;Name=WP_001303699.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303699.1;transl_table=11 NC_008258.1 RefSeq gene 3417252 3417884 . + . ID=gene3688;Name=SFV_RS18535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18535;old_locus_tag=SFV_3363 NC_008258.1 Protein Homology CDS 3417252 3417884 . + 0 ID=cds3606;Parent=gene3688;Dbxref=Genbank:WP_000242759.1;Name=WP_000242759.1;Note=cAMP receptor protein%3B complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000242759.1;transl_table=11 NC_008258.1 RefSeq gene 3417935 3420025 . + . ID=gene3689;Name=SFV_RS18540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18540;old_locus_tag=SFV_3364 NC_008258.1 Protein Homology CDS 3417935 3420025 . + 0 ID=cds3607;Parent=gene3689;Dbxref=Genbank:WP_005052777.1;Name=WP_005052777.1;gbkey=CDS;product=membrane protein;protein_id=WP_005052777.1;transl_table=11 NC_008258.1 RefSeq gene 3420092 3421312 . - . ID=gene3690;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;locus_tag=SFV_RS18545;old_locus_tag=SFV_3365 NC_008258.1 Protein Homology CDS 3420092 3421312 . - 0 ID=cds3608;Parent=gene3690;Dbxref=Genbank:WP_000963807.1;Name=WP_000963807.1;Note=DapATase%3B bifunctional enzyme that functions in arginine and lysine biosynthetic pathways%3B catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2%2C6-diaminoheptanedioate;gbkey=CDS;gene=argD;product=acetylornithine aminotransferase;protein_id=WP_000963807.1;transl_table=11 NC_008258.1 RefSeq gene 3421398 3421961 . - . ID=gene3691;Name=SFV_RS18550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18550;old_locus_tag=SFV_3366 NC_008258.1 Protein Homology CDS 3421398 3421961 . - 0 ID=cds3609;Parent=gene3691;Dbxref=Genbank:WP_000601855.1;Name=WP_000601855.1;Note=TrpG%3B with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine%3B TrpG provides the glutamine amidotransferase activity;gbkey=CDS;product=anthranilate synthase subunit II;protein_id=WP_000601855.1;transl_table=11 NC_008258.1 RefSeq gene 3421993 3422595 . - . ID=gene3692;Name=SFV_RS18555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18555;old_locus_tag=SFV_3367 NC_008258.1 Protein Homology CDS 3421993 3422595 . - 0 ID=cds3610;Parent=gene3692;Dbxref=Genbank:WP_001280643.1;Name=WP_001280643.1;gbkey=CDS;product=adenosine monophosphate-protein transferase;protein_id=WP_001280643.1;transl_table=11 NC_008258.1 RefSeq gene 3422585 3422752 . - . ID=gene3693;Name=SFV_RS18560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18560;old_locus_tag=SFV_3368 NC_008258.1 Protein Homology CDS 3422585 3422752 . - 0 ID=cds3611;Parent=gene3693;Dbxref=Genbank:WP_000736860.1;Name=WP_000736860.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000736860.1;transl_table=11 NC_008258.1 RefSeq gene 3422857 3423438 . - . ID=gene3694;Name=SFV_RS18565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18565;old_locus_tag=SFV_3369 NC_008258.1 Protein Homology CDS 3422857 3423438 . - 0 ID=cds3612;Parent=gene3694;Dbxref=Genbank:WP_000477215.1;Name=WP_000477215.1;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_000477215.1;transl_table=11 NC_008258.1 RefSeq gene 3423709 3424890 . + . ID=gene3695;Name=SFV_RS18570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18570;old_locus_tag=SFV_3370 NC_008258.1 Protein Homology CDS 3423709 3424890 . + 0 ID=cds3613;Parent=gene3695;Dbxref=Genbank:WP_000185260.1;Name=WP_000185260.1;gbkey=CDS;product=protein TsgA;protein_id=WP_000185260.1;transl_table=11 NC_008258.1 RefSeq gene 3425152 3427695 . + . ID=gene3696;Name=SFV_RS18575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18575;old_locus_tag=SFV_3371 NC_008258.1 Protein Homology CDS 3425152 3427695 . + 0 ID=cds3614;Parent=gene3696;Dbxref=Genbank:WP_000049213.1;Name=WP_000049213.1;gbkey=CDS;product=nitrite reductase subunit NirD;protein_id=WP_000049213.1;transl_table=11 NC_008258.1 RefSeq gene 3427692 3428018 . + . ID=gene3697;Name=nirD;gbkey=Gene;gene=nirD;gene_biotype=protein_coding;locus_tag=SFV_RS18580;old_locus_tag=SFV_3372 NC_008258.1 Protein Homology CDS 3427692 3428018 . + 0 ID=cds3615;Parent=gene3697;Dbxref=Genbank:WP_000084764.1;Name=WP_000084764.1;Note=involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+%3B bounds to NirB%2C the cytoplasmic subunit%2C whose expression is induced at high nitrate concentrations;gbkey=CDS;gene=nirD;product=nitrite reductase (NADH) small subunit;protein_id=WP_000084764.1;transl_table=11 NC_008258.1 RefSeq gene 3428144 3428950 . + . ID=gene3698;Name=SFV_RS18585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18585;old_locus_tag=SFV_3373 NC_008258.1 Protein Homology CDS 3428144 3428950 . + 0 ID=cds3616;Parent=gene3698;Dbxref=Genbank:WP_000493556.1;Name=WP_000493556.1;Note=member of the FNT family of formate and nitrite transporters;gbkey=CDS;product=nitrite transporter NirC;protein_id=WP_000493556.1;transl_table=11 NC_008258.1 RefSeq gene 3428969 3430342 . + . ID=gene3699;Name=cysG;gbkey=Gene;gene=cysG;gene_biotype=protein_coding;locus_tag=SFV_RS18590;old_locus_tag=SFV_3374 NC_008258.1 Protein Homology CDS 3428969 3430342 . + 0 ID=cds3617;Parent=gene3699;Dbxref=Genbank:WP_000349881.1;Name=WP_000349881.1;Note=multifunction enzyme consisting of uroporphyrin-III C-methyltransferase%2C precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase%3B catalyzes the methylation of uroporphyrinogen III to form precorrin-2%2C then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin;gbkey=CDS;gene=cysG;product=siroheme synthase;protein_id=WP_000349881.1;transl_table=11 NC_008258.1 RefSeq gene 3430589 3430756 . + . ID=gene3700;Name=SFV_RS18595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18595;old_locus_tag=SFV_3375 NC_008258.1 Protein Homology CDS 3430589 3430756 . + 0 ID=cds3618;Parent=gene3700;Dbxref=Genbank:WP_001031835.1;Name=WP_001031835.1;gbkey=CDS;product=membrane protein;protein_id=WP_001031835.1;transl_table=11 NC_008258.1 RefSeq gene 3431051 3432388 . + . ID=gene3701;Name=frlA;gbkey=Gene;gene=frlA;gene_biotype=pseudogene;locus_tag=SFV_RS18600;pseudo=true NC_008258.1 Protein Homology CDS 3431051 3432388 . + 0 ID=cds3619;Parent=gene3701;Note=inner membrane protein possibly involved in fructoselysine transport%3B member of the flr operon;gbkey=CDS;gene=frlA;product=fructoselysine transporter;pseudo=true;transl_except=(pos:3431864..3431866%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3432409 3433431 . + . ID=gene3702;Name=frlB;gbkey=Gene;gene=frlB;gene_biotype=protein_coding;locus_tag=SFV_RS18605;old_locus_tag=SFV_3377 NC_008258.1 Protein Homology CDS 3432409 3433431 . + 0 ID=cds3620;Parent=gene3702;Dbxref=Genbank:WP_001295163.1;Name=WP_001295163.1;Note=catalyzes the conversion of fructoselysine 6-phosphate to glucose 6-phosphate and lysine;gbkey=CDS;gene=frlB;product=fructoselysine 6-phosphate deglycase;protein_id=WP_001295163.1;transl_table=11 NC_008258.1 RefSeq gene 3433481 3434311 . + . ID=gene3703;Name=SFV_RS18610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18610;old_locus_tag=SFV_3378 NC_008258.1 Protein Homology CDS 3433481 3434311 . + 0 ID=cds3621;Parent=gene3703;Dbxref=Genbank:WP_000847820.1;Name=WP_000847820.1;Note=YhfOP%3B YhfP%3B YhfO%3B FrlC%3B catalyzes the interconversion of fructoselysine and psicoselysine;gbkey=CDS;product=protein FrlC;protein_id=WP_000847820.1;transl_table=11 NC_008258.1 RefSeq gene 3434308 3435093 . + . ID=gene3704;Name=SFV_RS18615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18615;old_locus_tag=SFV_3379 NC_008258.1 Protein Homology CDS 3434308 3435093 . + 0 ID=cds3622;Parent=gene3704;Dbxref=Genbank:WP_000853346.1;Name=WP_000853346.1;gbkey=CDS;product=fructoselysine kinase;protein_id=WP_000853346.1;transl_table=11 NC_008258.1 RefSeq gene 3435193 3435924 . + . ID=gene3705;Name=SFV_RS18620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18620;old_locus_tag=SFV_3380 NC_008258.1 Protein Homology CDS 3435193 3435924 . + 0 ID=cds3623;Parent=gene3705;Dbxref=Genbank:WP_001276847.1;Name=WP_001276847.1;Note=may act as a transcriptional regulator of a putative fructoselysine-induced operon containing the yhfM%2C yhfN%2C yhfO%2C yhfP%2C yhfQ%2C and yhfR genes;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001276847.1;transl_table=11 NC_008258.1 RefSeq gene 3436084 3437169 . - . ID=gene3706;Name=SFV_RS18625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18625;old_locus_tag=SFV_3381 NC_008258.1 Protein Homology CDS 3436084 3437169 . - 0 ID=cds3624;Parent=gene3706;Dbxref=Genbank:WP_000847157.1;Name=WP_000847157.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000847157.1;transl_table=11 NC_008258.1 RefSeq gene 3437181 3438485 . - . ID=gene3707;Name=SFV_RS18630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18630;old_locus_tag=SFV_3382 NC_008258.1 Protein Homology CDS 3437181 3438485 . - 0 ID=cds3625;Parent=gene3707;Dbxref=Genbank:WP_000366833.1;Name=WP_000366833.1;gbkey=CDS;product=membrane protein;protein_id=WP_000366833.1;transl_table=11 NC_008258.1 RefSeq gene 3438497 3438850 . - . ID=gene3708;Name=SFV_RS18635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18635;old_locus_tag=SFV_3383 NC_008258.1 Protein Homology CDS 3438497 3438850 . - 0 ID=cds3626;Parent=gene3708;Dbxref=Genbank:WP_000719728.1;Name=WP_000719728.1;gbkey=CDS;product=DUF2620 domain-containing protein;protein_id=WP_000719728.1;transl_table=11 NC_008258.1 RefSeq gene 3438861 3439739 . - . ID=gene3709;Name=SFV_RS18640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18640;old_locus_tag=SFV_3384 NC_008258.1 Protein Homology CDS 3438861 3439739 . - 0 ID=cds3627;Parent=gene3709;Dbxref=Genbank:WP_000007018.1;Name=WP_000007018.1;Note=phosphotriesterase homology protein%3B PhP%3B YhfV%3B member of a family of proteins related to phosphotriesterase (PTE);gbkey=CDS;product=hydrolase;protein_id=WP_000007018.1;transl_table=11 NC_008258.1 RefSeq gene 3439736 3440962 . - . ID=gene3710;Name=SFV_RS18645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18645;old_locus_tag=SFV_3385 NC_008258.1 Protein Homology CDS 3439736 3440962 . - 0 ID=cds3628;Parent=gene3710;Dbxref=Genbank:WP_000090630.1;Name=WP_000090630.1;gbkey=CDS;product=mutase;protein_id=WP_000090630.1;transl_table=11 NC_008258.1 RefSeq gene 3440963 3442126 . - . ID=gene3711;Name=SFV_RS18650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18650;old_locus_tag=SFV_3386 NC_008258.1 Protein Homology CDS 3440963 3442126 . - 0 ID=cds3629;Parent=gene3711;Dbxref=Genbank:WP_000497332.1;Name=WP_000497332.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000497332.1;transl_table=11 NC_008258.1 RefSeq gene 3442210 3442572 . - . ID=gene3712;Name=SFV_RS18655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18655;old_locus_tag=SFV_3387 NC_008258.1 Protein Homology CDS 3442210 3442572 . - 0 ID=cds3630;Parent=gene3712;Dbxref=Genbank:WP_024260311.1;Name=WP_024260311.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260311.1;transl_table=11 NC_008258.1 RefSeq gene 3442589 3443494 . - . ID=gene3713;Name=SFV_RS18660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18660;old_locus_tag=SFV_3388 NC_008258.1 Protein Homology CDS 3442589 3443494 . - 0 ID=cds3631;Parent=gene3713;Dbxref=Genbank:WP_001254808.1;Name=WP_001254808.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001254808.1;transl_table=11 NC_008258.1 RefSeq gene 3443764 3444768 . - . ID=gene3714;Name=SFV_RS18665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18665;old_locus_tag=SFV_3389 NC_008258.1 Protein Homology CDS 3443764 3444768 . - 0 ID=cds3632;Parent=gene3714;Dbxref=Genbank:WP_000165556.1;Name=WP_000165556.1;gbkey=CDS;product=tryptophan--tRNA ligase;protein_id=WP_000165556.1;transl_table=11 NC_008258.1 RefSeq gene 3444761 3445519 . - . ID=gene3715;Name=SFV_RS18670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18670;old_locus_tag=SFV_3390 NC_008258.1 Protein Homology CDS 3444761 3445519 . - 0 ID=cds3633;Parent=gene3715;Dbxref=Genbank:WP_001031724.1;Name=WP_001031724.1;Note=catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate;gbkey=CDS;product=phosphoglycolate phosphatase;protein_id=WP_001031724.1;transl_table=11 NC_008258.1 RefSeq gene 3445512 3446189 . - . ID=gene3716;Name=SFV_RS18675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18675;old_locus_tag=SFV_3391 NC_008258.1 Protein Homology CDS 3445512 3446189 . - 0 ID=cds3634;Parent=gene3716;Dbxref=Genbank:WP_000816280.1;Name=WP_000816280.1;gbkey=CDS;product=ribulose-phosphate 3-epimerase;protein_id=WP_000816280.1;transl_table=11 NC_008258.1 RefSeq gene 3446207 3447043 . - . ID=gene3717;Name=SFV_RS18680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18680;old_locus_tag=SFV_3392 NC_008258.1 Protein Homology CDS 3446207 3447043 . - 0 ID=cds3635;Parent=gene3717;Dbxref=Genbank:WP_000742151.1;Name=WP_000742151.1;gbkey=CDS;product=DNA adenine methylase;protein_id=WP_000742151.1;transl_table=11 NC_008258.1 RefSeq gene 3447150 3448436 . - . ID=gene3718;Name=SFV_RS18685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18685;old_locus_tag=SFV_3393 NC_008258.1 Protein Homology CDS 3447150 3448436 . - 0 ID=cds3636;Parent=gene3718;Dbxref=Genbank:WP_000343184.1;Name=WP_000343184.1;Note=binds the septal ring;gbkey=CDS;product=cell division protein DamX;protein_id=WP_000343184.1;transl_table=11 NC_008258.1 RefSeq gene 3448528 3449616 . - . ID=gene3719;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=SFV_RS18690;old_locus_tag=SFV_3394 NC_008258.1 Protein Homology CDS 3448528 3449616 . - 0 ID=cds3637;Parent=gene3719;Dbxref=Genbank:WP_000439873.1;Name=WP_000439873.1;Note=catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate%3B functions in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroB;product=3-dehydroquinate synthase;protein_id=WP_000439873.1;transl_table=11 NC_008258.1 RefSeq gene 3449673 3450194 . - . ID=gene3720;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=SFV_RS18695;old_locus_tag=SFV_3395 NC_008258.1 Protein Homology CDS 3449673 3450194 . - 0 ID=cds3638;Parent=gene3720;Dbxref=Genbank:WP_000818618.1;Name=WP_000818618.1;Note=type I enzyme similar to type II but differentially regulated%3B major shikimate kinase in fully repressed cells%3B catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis;gbkey=CDS;gene=aroK;product=shikimate kinase;protein_id=WP_000818618.1;transl_table=11 NC_008258.1 RefSeq gene 3450595 3451755 . - . ID=gene3721;Name=hofQ;gbkey=Gene;gene=hofQ;gene_biotype=protein_coding;locus_tag=SFV_RS18700;old_locus_tag=SFV_3396 NC_008258.1 Protein Homology CDS 3450595 3451755 . - 0 ID=cds3639;Parent=gene3721;Dbxref=Genbank:WP_001325235.1;Name=WP_001325235.1;Note=outer membrane porin probably involved in uptake of extracellular double-stranded DNA%3B similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa;gbkey=CDS;gene=hofQ;product=porin;protein_id=WP_001325235.1;transl_table=11 NC_008258.1 RefSeq gene 3451745 3452149 . - . ID=gene3722;Name=SFV_RS18705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18705;old_locus_tag=SFV_3397 NC_008258.1 Protein Homology CDS 3451745 3452149 . - 0 ID=cds3640;Parent=gene3722;Dbxref=Genbank:WP_005064917.1;Name=WP_005064917.1;gbkey=CDS;product=DNA utilization protein HofP;protein_id=WP_005064917.1;transl_table=11 NC_008258.1 RefSeq gene 3452139 3452579 . - . ID=gene3723;Name=SFV_RS18710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18710;old_locus_tag=SFV_3398 NC_008258.1 Protein Homology CDS 3452139 3452579 . - 0 ID=cds3641;Parent=gene3723;Dbxref=Genbank:WP_001055753.1;Name=WP_001055753.1;gbkey=CDS;product=DNA utilization protein HofO;protein_id=WP_001055753.1;transl_table=11 NC_008258.1 RefSeq gene 3452563 3453102 . - . ID=gene3724;Name=SFV_RS18715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18715;old_locus_tag=SFV_3399 NC_008258.1 Protein Homology CDS 3452563 3453102 . - 0 ID=cds3642;Parent=gene3724;Dbxref=Genbank:WP_001069315.1;Name=WP_001069315.1;gbkey=CDS;product=DNA utilization protein HofN;protein_id=WP_001069315.1;transl_table=11 NC_008258.1 RefSeq gene 3453102 3453881 . - . ID=gene3725;Name=SFV_RS18720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18720;old_locus_tag=SFV_3400 NC_008258.1 Protein Homology CDS 3453102 3453881 . - 0 ID=cds3643;Parent=gene3725;Dbxref=Genbank:WP_005052731.1;Name=WP_005052731.1;gbkey=CDS;product=DNA utilization protein HofM;protein_id=WP_005052731.1;transl_table=11 NC_008258.1 RefSeq gene 3454001 3456553 . + . ID=gene3726;Name=mrcA;gbkey=Gene;gene=mrcA;gene_biotype=protein_coding;locus_tag=SFV_RS18725;old_locus_tag=SFV_3401 NC_008258.1 Protein Homology CDS 3454001 3456553 . + 0 ID=cds3644;Parent=gene3726;Dbxref=Genbank:WP_005065087.1;Name=WP_005065087.1;Note=bifunctional murein transglycosylase/murein transpeptidase%3B penicillin-binding protein 1A%3B involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation%3B penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits;gbkey=CDS;gene=mrcA;product=penicillin-binding protein 1A;protein_id=WP_005065087.1;transl_table=11 NC_008258.1 RefSeq gene 3456718 3457278 . - . ID=gene3727;Name=nudE;gbkey=Gene;gene=nudE;gene_biotype=protein_coding;locus_tag=SFV_RS18730;old_locus_tag=SFV_3402 NC_008258.1 Protein Homology CDS 3456718 3457278 . - 0 ID=cds3645;Parent=gene3727;Dbxref=Genbank:WP_001043306.1;Name=WP_001043306.1;Note=ADP-sugar pyrophosphatase%3B catalyzes the formation of D-ribose 5-phosphate from ADP-ribose%3B can also act on ADP-mannose and ADP-glucose;gbkey=CDS;gene=nudE;product=adenosine nucleotide hydrolase;protein_id=WP_001043306.1;transl_table=11 NC_008258.1 RefSeq gene 3457598 3459733 . + . ID=gene3728;Name=SFV_RS18735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18735;old_locus_tag=SFV_3403 NC_008258.1 Protein Homology CDS 3457598 3459733 . + 0 ID=cds3646;Parent=gene3728;Dbxref=Genbank:WP_000104521.1;Name=WP_000104521.1;gbkey=CDS;product=intracellular growth attenuator protein IgaA;protein_id=WP_000104521.1;transl_table=11 NC_008258.1 RefSeq gene 3459798 3460499 . + . ID=gene3729;Name=SFV_RS18740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18740;old_locus_tag=SFV_3404 NC_008258.1 Protein Homology CDS 3459798 3460499 . + 0 ID=cds3647;Parent=gene3729;Dbxref=Genbank:WP_000547897.1;Name=WP_000547897.1;gbkey=CDS;product=nucleotidase;protein_id=WP_000547897.1;transl_table=11 NC_008258.1 RefSeq gene 3460477 3460878 . + . ID=gene3730;Name=SFV_RS18745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18745;old_locus_tag=SFV_3405 NC_008258.1 Protein Homology CDS 3460477 3460878 . + 0 ID=cds3648;Parent=gene3730;Dbxref=Genbank:WP_000660489.1;Name=WP_000660489.1;gbkey=CDS;product=heat-shock protein Hsp15;protein_id=WP_000660489.1;transl_table=11 NC_008258.1 RefSeq gene 3460903 3461772 . + . ID=gene3731;Name=hslO;gbkey=Gene;gene=hslO;gene_biotype=protein_coding;locus_tag=SFV_RS18750;old_locus_tag=SFV_3406 NC_008258.1 Protein Homology CDS 3460903 3461772 . + 0 ID=cds3649;Parent=gene3731;Dbxref=Genbank:WP_005052722.1;Name=WP_005052722.1;Note=becomes active under oxidative stress%3B four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive%3B oxidative stress results in oxidized cysteines%2C release of zinc%2C and binding of Hsp33 to aggregation-prone proteins%3B forms dimers and higher order oligomers;gbkey=CDS;gene=hslO;product=molecular chaperone Hsp33;protein_id=WP_005052722.1;transl_table=11 NC_008258.1 RefSeq gene 3461916 3463640 . - . ID=gene3732;Name=SFV_RS18755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18755;old_locus_tag=SFV_3407 NC_008258.1 Protein Homology CDS 3461916 3463640 . - 0 ID=cds3650;Parent=gene3732;Dbxref=Genbank:WP_000370835.1;Name=WP_000370835.1;gbkey=CDS;product=transporter;protein_id=WP_000370835.1;transl_table=11 NC_008258.1 RefSeq gene 3463716 3463847 . - . ID=gene3733;Name=SFV_RS18760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18760 NC_008258.1 Protein Homology CDS 3463716 3463847 . - 0 ID=cds3651;Parent=gene3733;Dbxref=Genbank:WP_001303701.1;Name=WP_001303701.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303701.1;transl_table=11 NC_008258.1 RefSeq gene 3464019 3465641 . + . ID=gene3734;Name=SFV_RS18765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18765;old_locus_tag=SFV_3408 NC_008258.1 Protein Homology CDS 3464019 3465641 . + 0 ID=cds3652;Parent=gene3734;Dbxref=Genbank:WP_005105989.1;Name=WP_005105989.1;Note=PEP carboxykinase%3B PEP carboxylase%3B PEPCK%3B catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP;gbkey=CDS;product=phosphoenolpyruvate carboxykinase [ATP];protein_id=WP_005105989.1;transl_table=11 NC_008258.1 RefSeq gene 3465717 3467069 . - . ID=gene3735;Name=envZ;gbkey=Gene;gene=envZ;gene_biotype=protein_coding;gene_synonym=ompB;locus_tag=SFV_RS18770;old_locus_tag=SFV_3409 NC_008258.1 Protein Homology CDS 3465717 3467069 . - 0 ID=cds3653;Parent=gene3735;Dbxref=Genbank:WP_001253696.1;Name=WP_001253696.1;Note=membrane-localized osmosensor%3B histidine kinase%3B in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR;gbkey=CDS;gene=envZ;product=two-component system sensor histidine kinase;protein_id=WP_001253696.1;transl_table=11 NC_008258.1 RefSeq gene 3467066 3467785 . - . ID=gene3736;Name=ompR;gbkey=Gene;gene=ompR;gene_biotype=protein_coding;locus_tag=SFV_RS18775;old_locus_tag=SFV_3410 NC_008258.1 Protein Homology CDS 3467066 3467785 . - 0 ID=cds3654;Parent=gene3736;Dbxref=Genbank:WP_001157751.1;Name=WP_001157751.1;Note=part of two-component system EnvZ/OmpR%3B regulates transcription of outer membrane porin genes ompC/F%3B under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR%3B the result is increased expression of ompC and repression of ompF%3B also functions in regulation of other genes%3B forms dimers upon phosphorylation;gbkey=CDS;gene=ompR;product=two-component system response regulator;protein_id=WP_001157751.1;transl_table=11 NC_008258.1 RefSeq gene 3468013 3468489 . + . ID=gene3737;Name=greB;gbkey=Gene;gene=greB;gene_biotype=protein_coding;locus_tag=SFV_RS18780;old_locus_tag=SFV_3411 NC_008258.1 Protein Homology CDS 3468013 3468489 . + 0 ID=cds3655;Parent=gene3737;Dbxref=Genbank:WP_000856735.1;Name=WP_000856735.1;Note=necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites%3B arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through%2C resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus;gbkey=CDS;gene=greB;product=transcription elongation factor GreB;protein_id=WP_000856735.1;transl_table=11 NC_008258.1 RefSeq gene 3468586 3470907 . + . ID=gene3738;Name=SFV_RS18785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18785;old_locus_tag=SFV_3412 NC_008258.1 Protein Homology CDS 3468586 3470907 . + 0 ID=cds3656;Parent=gene3738;Dbxref=Genbank:WP_000980715.1;Name=WP_000980715.1;gbkey=CDS;product=transcription accessory protein;protein_id=WP_000980715.1;transl_table=11 NC_008258.1 RefSeq gene 3471345 3471572 . + . ID=gene3739;Name=feoA;gbkey=Gene;gene=feoA;gene_biotype=protein_coding;locus_tag=SFV_RS18790;old_locus_tag=SFV_3413 NC_008258.1 Protein Homology CDS 3471345 3471572 . + 0 ID=cds3657;Parent=gene3739;Dbxref=Genbank:WP_001200453.1;Name=WP_001200453.1;gbkey=CDS;gene=feoA;product=iron transporter;protein_id=WP_001200453.1;transl_table=11 NC_008258.1 RefSeq gene 3471589 3473910 . + . ID=gene3740;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=SFV_RS18795;old_locus_tag=SFV_3414 NC_008258.1 Protein Homology CDS 3471589 3473910 . + 0 ID=cds3658;Parent=gene3740;Dbxref=Genbank:WP_000737024.1;Name=WP_000737024.1;Note=cytoplasmic membrane ferrous uptake system permease%3B mutations disrupt the ability of Escherichia coli to take up ferrous iron%3B GTP-binding protein which requires GTP for efficient iron(II) uptake;gbkey=CDS;gene=feoB;product=ferrous iron transporter B;protein_id=WP_000737024.1;transl_table=11 NC_008258.1 RefSeq gene 3473910 3474146 . + . ID=gene3741;Name=SFV_RS18800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18800;old_locus_tag=SFV_3415 NC_008258.1 Protein Homology CDS 3473910 3474146 . + 0 ID=cds3659;Parent=gene3741;Dbxref=Genbank:WP_001295699.1;Name=WP_001295699.1;Note=regulatory protein that controls transcription of feoABC genes;gbkey=CDS;product=ferrous iron transporter C;protein_id=WP_001295699.1;transl_table=11 NC_008258.1 RefSeq gene 3474349 3475236 . + . ID=gene3742;Name=SFV_RS18805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18805;old_locus_tag=SFV_3416 NC_008258.1 Protein Homology CDS 3474349 3475236 . + 0 ID=cds3660;Parent=gene3742;Dbxref=Genbank:WP_000039078.1;Name=WP_000039078.1;gbkey=CDS;product=transposase;protein_id=WP_000039078.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3475218 3476554 . + . ID=id547;gbkey=repeat_region NC_008258.1 RefSeq region 3475221 3476551 . + . ID=id548;gbkey=mobile_element NC_008258.1 RefSeq gene 3475312 3475677 . + . ID=gene3743;Name=SFV_RS18810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18810;old_locus_tag=SFV_3417 NC_008258.1 Protein Homology CDS 3475312 3475677 . + 0 ID=cds3661;Parent=gene3743;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 3475635 3476540 . + . ID=gene3744;Name=SFV_RS18815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18815;old_locus_tag=SFV_3418 NC_008258.1 Protein Homology CDS 3475635 3476540 . + 0 ID=cds3662;Parent=gene3744;Dbxref=Genbank:WP_011069312.1;Name=WP_011069312.1;gbkey=CDS;product=integrase;protein_id=WP_011069312.1;transl_table=11 NC_008258.1 RefSeq gene 3476636 3476905 . + . ID=gene3745;Name=SFV_RS18820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18820 NC_008258.1 Protein Homology CDS 3476636 3476905 . + 0 ID=cds3663;Parent=gene3745;Dbxref=Genbank:WP_011069541.1;Name=WP_011069541.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069541.1;transl_table=11 NC_008258.1 RefSeq gene 3476899 3477264 . + . ID=gene3746;Name=SFV_RS18825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18825;old_locus_tag=SFV_3419 NC_008258.1 Protein Homology CDS 3476899 3477264 . + 0 ID=cds3664;Parent=gene3746;Dbxref=Genbank:WP_000237588.1;Name=WP_000237588.1;gbkey=CDS;product=mRNA interferase PemK;protein_id=WP_000237588.1;transl_table=11 NC_008258.1 RefSeq gene 3477265 3478053 . - . ID=gene3747;Name=SFV_RS18830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18830;old_locus_tag=SFV_3420 NC_008258.1 Protein Homology CDS 3477265 3478053 . - 0 ID=cds3665;Parent=gene3747;Dbxref=Genbank:WP_001060072.1;Name=WP_001060072.1;Note=Shows carboxylesterase activity with a preference for short chain fatty acid esters%3B involved in pimeloyl-CoA synthesis;gbkey=CDS;product=pimeloyl-[acyl-carrier protein] methyl ester esterase;protein_id=WP_001060072.1;transl_table=11 NC_008258.1 RefSeq gene 3478091 3478774 . + . ID=gene3748;Name=SFV_RS18835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18835;old_locus_tag=SFV_3421 NC_008258.1 Protein Homology CDS 3478091 3478774 . + 0 ID=cds3666;Parent=gene3748;Dbxref=Genbank:WP_000958727.1;Name=WP_000958727.1;Note=required for utilization of DNA as the sole source of carbon and energy;gbkey=CDS;product=protein GntX;protein_id=WP_000958727.1;transl_table=11 NC_008258.1 RefSeq gene 3478833 3479408 . + . ID=gene3749;Name=SFV_RS18840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18840;old_locus_tag=SFV_3422 NC_008258.1 Protein Homology CDS 3478833 3479408 . + 0 ID=cds3667;Parent=gene3749;Dbxref=Genbank:WP_000619389.1;Name=WP_000619389.1;Note=cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source;gbkey=CDS;product=fe/S biogenesis protein nfuA;protein_id=WP_000619389.1;transl_table=11 NC_008258.1 RefSeq gene 3479769 3481085 . + . ID=gene3750;Name=SFV_RS18845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18845;old_locus_tag=SFV_3423 NC_008258.1 Protein Homology CDS 3479769 3481085 . + 0 ID=cds3668;Parent=gene3750;Dbxref=Genbank:WP_001131758.1;Name=WP_001131758.1;gbkey=CDS;product=gluconate transporter;protein_id=WP_001131758.1;transl_table=11 NC_008258.1 RefSeq gene 3481130 3483214 . - . ID=gene3751;Name=malQ;gbkey=Gene;gene=malQ;gene_biotype=protein_coding;locus_tag=SFV_RS18850;old_locus_tag=SFV_3424 NC_008258.1 Protein Homology CDS 3481130 3483214 . - 0 ID=cds3669;Parent=gene3751;Dbxref=Genbank:WP_000444366.1;Name=WP_000444366.1;Note=amylomaltase%3B acts to release glucose from maltodextrins;gbkey=CDS;gene=malQ;product=4-alpha-glucanotransferase;protein_id=WP_000444366.1;transl_table=11 NC_008258.1 RefSeq gene 3483224 3485617 . - . ID=gene3752;Name=SFV_RS18855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18855;old_locus_tag=SFV_3425 NC_008258.1 Protein Homology CDS 3483224 3485617 . - 0 ID=cds3670;Parent=gene3752;Dbxref=Genbank:WP_000081894.1;Name=WP_000081894.1;gbkey=CDS;product=glycogen phosphorylase;protein_id=WP_000081894.1;transl_table=11 NC_008258.1 RefSeq gene 3486229 3488934 . + . ID=gene3753;Name=SFV_RS18860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18860;old_locus_tag=SFV_3426 NC_008258.1 Protein Homology CDS 3486229 3488934 . + 0 ID=cds3671;Parent=gene3753;Dbxref=Genbank:WP_000907013.1;Name=WP_000907013.1;Note=Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000907013.1;transl_table=11 NC_008258.1 RefSeq gene 3488977 3489879 . - . ID=gene3754;Name=SFV_RS18865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18865;old_locus_tag=SFV_3427 NC_008258.1 Protein Homology CDS 3488977 3489879 . - 0 ID=cds3672;Parent=gene3754;Dbxref=Genbank:WP_005105991.1;Name=WP_005105991.1;Note=catalyzes the conversion of terminal3'-phosphate of RNA to the 2'%2C3'-cyclicphosphodiester;gbkey=CDS;product=RNA 3'-terminal phosphate cyclase;protein_id=WP_005105991.1;transl_table=11 NC_008258.1 RefSeq gene 3489883 3491109 . - . ID=gene3755;Name=SFV_RS18870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18870;old_locus_tag=SFV_3428 NC_008258.1 Protein Homology CDS 3489883 3491109 . - 0 ID=cds3673;Parent=gene3755;Dbxref=Genbank:WP_001105485.1;Name=WP_001105485.1;gbkey=CDS;product=RNA-splicing ligase;protein_id=WP_001105485.1;transl_table=11 NC_008258.1 RefSeq gene 3491298 3492896 . + . ID=gene3756;Name=SFV_RS18875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18875;old_locus_tag=SFV_3429 NC_008258.1 Protein Homology CDS 3491298 3492896 . + 0 ID=cds3674;Parent=gene3756;Dbxref=Genbank:WP_001232887.1;Name=WP_001232887.1;Note=sigma 54-dependent%3B regulates genes involved in forming a 2'%2C3'-cyclic phosphodiester on RNA;gbkey=CDS;product=Fis family transcriptional regulator;protein_id=WP_001232887.1;transl_table=11 NC_008258.1 RefSeq gene 3492878 3493636 . - . ID=gene3757;Name=SFV_RS18880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18880;old_locus_tag=SFV_3430 NC_008258.1 Protein Homology CDS 3492878 3493636 . - 0 ID=cds3675;Parent=gene3757;Dbxref=Genbank:WP_000815099.1;Name=WP_000815099.1;Note=represses the glpD%2C glpFK%2C glpTQ%2C and glpACB operons involved in glycerol-3-phosphate metabolism;gbkey=CDS;product=glycerol-3-phosphate regulon repressor;protein_id=WP_000815099.1;transl_table=11 NC_008258.1 RefSeq gene 3493653 3494483 . - . ID=gene3758;Name=SFV_RS18885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18885;old_locus_tag=SFV_3431 NC_008258.1 Protein Homology CDS 3493653 3494483 . - 0 ID=cds3676;Parent=gene3758;Dbxref=Genbank:WP_000928716.1;Name=WP_000928716.1;Note=protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity;gbkey=CDS;product=rhomboid protease GlpG;protein_id=WP_000928716.1;transl_table=11 NC_008258.1 RefSeq gene 3494528 3494854 . - . ID=gene3759;Name=glpE;gbkey=Gene;gene=glpE;gene_biotype=protein_coding;locus_tag=SFV_RS18890;old_locus_tag=SFV_3432 NC_008258.1 Protein Homology CDS 3494528 3494854 . - 0 ID=cds3677;Parent=gene3759;Dbxref=Genbank:WP_000371928.1;Name=WP_000371928.1;Note=belongs to rhodanese family%3B thiosulfate thiotransferase%3B in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency%3B contains an active site cysteine;gbkey=CDS;gene=glpE;product=thiosulfate sulfurtransferase GlpE;protein_id=WP_000371928.1;transl_table=11 NC_008258.1 RefSeq gene 3495044 3496549 . + . ID=gene3760;Name=glpD;gbkey=Gene;gene=glpD;gene_biotype=protein_coding;locus_tag=SFV_RS18895;old_locus_tag=SFV_3433 NC_008258.1 Protein Homology CDS 3495044 3496549 . + 0 ID=cds3678;Parent=gene3760;Dbxref=Genbank:WP_000448143.1;Name=WP_000448143.1;Note=in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions%3B anaerobic expression is repressed by the arcAB system%3B converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8%3B associates with the cytoplasmic membrane;gbkey=CDS;gene=glpD;product=glycerol-3-phosphate dehydrogenase;protein_id=WP_000448143.1;transl_table=11 NC_008258.1 RefSeq gene 3496755 3497036 . - . ID=gene3761;Name=SFV_RS18900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18900;old_locus_tag=SFV_3434 NC_008258.1 Protein Homology CDS 3496755 3497036 . - 0 ID=cds3679;Parent=gene3761;Dbxref=Genbank:WP_001181211.1;Name=WP_001181211.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001181211.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3497142 3498570 . + . ID=id549;gbkey=repeat_region NC_008258.1 RefSeq region 3497143 3498569 . - . ID=id550;gbkey=mobile_element NC_008258.1 RefSeq gene 3497156 3498485 . - . ID=gene3762;Name=SFV_RS18905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS18905;pseudo=true NC_008258.1 Protein Homology CDS 3497156 3498485 . - 0 ID=cds3680;Parent=gene3762;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3498603 3501050 . - . ID=gene3763;Name=SFV_RS18910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18910;old_locus_tag=SFV_3437 NC_008258.1 Protein Homology CDS 3498603 3501050 . - 0 ID=cds3681;Parent=gene3763;Dbxref=Genbank:WP_000993449.1;Name=WP_000993449.1;gbkey=CDS;product=glycogen phosphorylase;protein_id=WP_000993449.1;transl_table=11 NC_008258.1 RefSeq gene 3501069 3502502 . - . ID=gene3764;Name=glgA;gbkey=Gene;gene=glgA;gene_biotype=protein_coding;locus_tag=SFV_RS18915;old_locus_tag=SFV_3438 NC_008258.1 Protein Homology CDS 3501069 3502502 . - 0 ID=cds3682;Parent=gene3764;Dbxref=Genbank:WP_001197649.1;Name=WP_001197649.1;Note=catalyzes the formation of alpha-1%2C4-glucan chains from ADP-glucose;gbkey=CDS;gene=glgA;product=glycogen synthase;protein_id=WP_001197649.1;transl_table=11 NC_008258.1 RefSeq gene 3502502 3503797 . - . ID=gene3765;Name=glgC;gbkey=Gene;gene=glgC;gene_biotype=protein_coding;locus_tag=SFV_RS18920;old_locus_tag=SFV_3439 NC_008258.1 Protein Homology CDS 3502502 3503797 . - 0 ID=cds3683;Parent=gene3765;Dbxref=Genbank:WP_000253975.1;Name=WP_000253975.1;Note=catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate;gbkey=CDS;gene=glgC;product=glucose-1-phosphate adenylyltransferase;protein_id=WP_000253975.1;transl_table=11 NC_008258.1 RefSeq gene 3503815 3505788 . - . ID=gene3766;Name=SFV_RS18925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18925;old_locus_tag=SFV_3440 NC_008258.1 Protein Homology CDS 3503815 3505788 . - 0 ID=cds3684;Parent=gene3766;Dbxref=Genbank:WP_000192556.1;Name=WP_000192556.1;Note=catalyzes the hydrolysis of the alpha-1%2C6-glucosidic linkages in partially depolymerized glycogen;gbkey=CDS;product=glycogen debranching protein;protein_id=WP_000192556.1;transl_table=11 NC_008258.1 RefSeq gene 3505785 3507971 . - . ID=gene3767;Name=SFV_RS18930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18930;old_locus_tag=SFV_3441 NC_008258.1 Protein Homology CDS 3505785 3507971 . - 0 ID=cds3685;Parent=gene3767;Dbxref=Genbank:WP_001283719.1;Name=WP_001283719.1;gbkey=CDS;product=1%2C4-alpha-glucan-branching protein;protein_id=WP_001283719.1;transl_table=11 NC_008258.1 RefSeq gene 3508244 3509347 . - . ID=gene3768;Name=SFV_RS18935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18935;old_locus_tag=SFV_3442 NC_008258.1 Protein Homology CDS 3508244 3509347 . - 0 ID=cds3686;Parent=gene3768;Dbxref=Genbank:WP_000799956.1;Name=WP_000799956.1;Note=catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde;gbkey=CDS;product=aspartate-semialdehyde dehydrogenase;protein_id=WP_000799956.1;transl_table=11 NC_008258.1 RefSeq gene 3509539 3510132 . + . ID=gene3769;Name=SFV_RS18940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18940;old_locus_tag=SFV_3443 NC_008258.1 Protein Homology CDS 3509539 3510132 . + 0 ID=cds3687;Parent=gene3769;Dbxref=Genbank:WP_001002544.1;Name=WP_001002544.1;gbkey=CDS;product=membrane protein;protein_id=WP_001002544.1;transl_table=11 NC_008258.1 RefSeq gene 3510189 3511528 . - . ID=gene3770;Name=SFV_RS18945;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS18945;pseudo=true NC_008258.1 Protein Homology CDS 3510189 3511528 . - 0 ID=cds3688;Parent=gene3770;exception=annotated by transcript or proteomic data;gbkey=CDS;product=gluconate transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3511532 3512059 . - . ID=gene3771;Name=gntK;gbkey=Gene;gene=gntK;gene_biotype=protein_coding;locus_tag=SFV_RS18950;old_locus_tag=SFV_3445 NC_008258.1 Protein Homology CDS 3511532 3512059 . - 0 ID=cds3689;Parent=gene3771;Dbxref=Genbank:WP_000108334.1;Name=WP_000108334.1;Note=thermoresistant%3B catalyzes the formation of 6-phospho-D-gluconate from gluconate;gbkey=CDS;gene=gntK;product=gluconate kinase;protein_id=WP_000108334.1;transl_table=11 NC_008258.1 RefSeq gene 3512198 3513193 . - . ID=gene3772;Name=SFV_RS18955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18955;old_locus_tag=SFV_3446 NC_008258.1 Protein Homology CDS 3512198 3513193 . - 0 ID=cds3690;Parent=gene3772;Dbxref=Genbank:WP_000730263.1;Name=WP_000730263.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000730263.1;transl_table=11 NC_008258.1 RefSeq gene 3513417 3514112 . - . ID=gene3773;Name=SFV_RS18960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18960;old_locus_tag=SFV_3447 NC_008258.1 Protein Homology CDS 3513417 3514112 . - 0 ID=cds3691;Parent=gene3773;Dbxref=Genbank:WP_000639797.1;Name=WP_000639797.1;gbkey=CDS;product=quercetin 2%2C3-dioxygenase;protein_id=WP_000639797.1;transl_table=11 NC_008258.1 RefSeq gene 3514235 3515272 . - . ID=gene3774;Name=SFV_RS18965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18965;old_locus_tag=SFV_3448 NC_008258.1 Protein Homology CDS 3514235 3515272 . - 0 ID=cds3692;Parent=gene3774;Dbxref=Genbank:WP_000236312.1;Name=WP_000236312.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000236312.1;transl_table=11 NC_008258.1 RefSeq gene 3515605 3516093 . + . ID=gene3775;Name=SFV_RS18970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18970;old_locus_tag=SFV_3449 NC_008258.1 Protein Homology CDS 3515605 3516093 . + 0 ID=cds3693;Parent=gene3775;Dbxref=Genbank:WP_001315054.1;Name=WP_001315054.1;Note=YhhY%3B regulated by the fur regulator%3B unknown function;gbkey=CDS;product=acetyltransferase;protein_id=WP_001315054.1;transl_table=11 NC_008258.1 RefSeq gene 3516152 3517894 . - . ID=gene3776;Name=ggt;gbkey=Gene;gene=ggt;gene_biotype=protein_coding;locus_tag=SFV_RS18975;old_locus_tag=SFV_3450 NC_008258.1 Protein Homology CDS 3516152 3517894 . - 0 ID=cds3694;Parent=gene3776;Dbxref=Genbank:WP_000595080.1;Name=WP_000595080.1;Note=periplasmic enzyme%3B post-translationally processed into two subunits which are required for wild-type enzyme activity%3B cleaves the gammaglutamyl linkages of compounds such as glutathione and transfer the gammaglutamyl group to other amino acids and peptides;gbkey=CDS;gene=ggt;product=gamma-glutamyltranspeptidase;protein_id=WP_000595080.1;transl_table=11 NC_008258.1 RefSeq gene 3518014 3518454 . + . ID=gene3777;Name=SFV_RS18980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18980;old_locus_tag=SFV_3451 NC_008258.1 Protein Homology CDS 3518014 3518454 . + 0 ID=cds3695;Parent=gene3777;Dbxref=Genbank:WP_000825996.1;Name=WP_000825996.1;gbkey=CDS;product=DUF2756 domain-containing protein;protein_id=WP_000825996.1;transl_table=11 NC_008258.1 RefSeq gene 3518441 3519184 . - . ID=gene3778;Name=ugpQ;gbkey=Gene;gene=ugpQ;gene_biotype=protein_coding;locus_tag=SFV_RS18985;old_locus_tag=SFV_3452 NC_008258.1 Protein Homology CDS 3518441 3519184 . - 0 ID=cds3696;Parent=gene3778;Dbxref=Genbank:WP_000073595.1;Name=WP_000073595.1;Note=hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol%3B induced when cells are starved for inorganic phosphate;gbkey=CDS;gene=ugpQ;product=glycerophosphodiester phosphodiesterase;protein_id=WP_000073595.1;transl_table=11 NC_008258.1 RefSeq gene 3519181 3520171 . - . ID=gene3779;Name=SFV_RS18990;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS18990;pseudo=true NC_008258.1 Protein Homology CDS 3519181 3520171 . - 0 ID=cds3697;Parent=gene3779;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(3520118..3520120)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3520173 3521018 . - . ID=gene3780;Name=SFV_RS18995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS18995;old_locus_tag=SFV_3454 NC_008258.1 Protein Homology CDS 3520173 3521018 . - 0 ID=cds3698;Parent=gene3780;Dbxref=Genbank:WP_000572160.1;Name=WP_000572160.1;Note=with UgpABC is involved in uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol 3-phosphate ABC transporter permease;protein_id=WP_000572160.1;transl_table=11 NC_008258.1 RefSeq gene 3521015 3521902 . - . ID=gene3781;Name=SFV_RS19000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19000;old_locus_tag=SFV_3455 NC_008258.1 Protein Homology CDS 3521015 3521902 . - 0 ID=cds3699;Parent=gene3781;Dbxref=Genbank:WP_000099287.1;Name=WP_000099287.1;Note=with UgpEC is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol 3-phosphate ABC transporter permease;protein_id=WP_000099287.1;transl_table=11 NC_008258.1 RefSeq gene 3522000 3523316 . - . ID=gene3782;Name=SFV_RS19005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19005;old_locus_tag=SFV_3456 NC_008258.1 Protein Homology CDS 3522000 3523316 . - 0 ID=cds3700;Parent=gene3782;Dbxref=Genbank:WP_000803201.1;Name=WP_000803201.1;Note=with UgpACE is involved in the uptake of glycerol-3-phosphate;gbkey=CDS;product=sn-glycerol-3-phosphate-binding periplasmic protein UgpB;protein_id=WP_000803201.1;transl_table=11 NC_008258.1 RefSeq gene 3523549 3523677 . - . ID=gene3783;Name=SFV_RS19010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19010 NC_008258.1 Protein Homology CDS 3523549 3523677 . - 0 ID=cds3701;Parent=gene3783;Dbxref=Genbank:WP_005093467.1;Name=WP_005093467.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005093467.1;transl_table=11 NC_008258.1 RefSeq gene 3523713 3524426 . - . ID=gene3784;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=SFV_RS19015;old_locus_tag=SFV_3457 NC_008258.1 Protein Homology CDS 3523713 3524426 . - 0 ID=cds3702;Parent=gene3784;Dbxref=Genbank:WP_000416895.1;Name=WP_000416895.1;Note=with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livF;product=branched-chain amino acid ABC transporter ATP-binding protein;protein_id=WP_000416895.1;transl_table=11 NC_008258.1 RefSeq gene 3524428 3525195 . - . ID=gene3785;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=SFV_RS19020;old_locus_tag=SFV_3458 NC_008258.1 Protein Homology CDS 3524428 3525195 . - 0 ID=cds3703;Parent=gene3785;Dbxref=Genbank:WP_000082101.1;Name=WP_000082101.1;Note=Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livG;product=branched-chain amino acid ABC transporter ATP-binding protein;protein_id=WP_000082101.1;transl_table=11 NC_008258.1 RefSeq gene 3525192 3526469 . - . ID=gene3786;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=SFV_RS19025;old_locus_tag=SFV_3459 NC_008258.1 Protein Homology CDS 3525192 3526469 . - 0 ID=cds3704;Parent=gene3786;Dbxref=Genbank:WP_000803791.1;Name=WP_000803791.1;Note=Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids%3B LivFGHMK is specific for the transport of leucine%2C while LivFGHMJ is a transporter for leucine%2C isoleucine%2C and valine;gbkey=CDS;gene=livM;product=leucine/isoleucine/valine transporter permease subunit;protein_id=WP_000803791.1;transl_table=11 NC_008258.1 RefSeq gene 3526466 3527392 . - . ID=gene3787;Name=SFV_RS19030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19030;old_locus_tag=SFV_3460 NC_008258.1 Protein Homology CDS 3526466 3527392 . - 0 ID=cds3705;Parent=gene3787;Dbxref=Genbank:WP_001295108.1;Name=WP_001295108.1;Note=LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter;gbkey=CDS;product=branched-chain amino acid ABC transporter permease;protein_id=WP_001295108.1;transl_table=11 NC_008258.1 RefSeq gene 3527440 3528549 . - . ID=gene3788;Name=SFV_RS19035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19035;old_locus_tag=SFV_3461 NC_008258.1 Protein Homology CDS 3527440 3528549 . - 0 ID=cds3706;Parent=gene3788;Dbxref=Genbank:WP_000827697.1;Name=WP_000827697.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_000827697.1;transl_table=11 NC_008258.1 RefSeq gene 3528973 3529356 . + . ID=gene3789;Name=SFV_RS19040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19040;old_locus_tag=SFV_3462 NC_008258.1 Protein Homology CDS 3528973 3529356 . + 0 ID=cds3707;Parent=gene3789;Dbxref=Genbank:WP_000778795.1;Name=WP_000778795.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000778795.1;transl_table=11 NC_008258.1 RefSeq gene 3529380 3529499 . + . ID=gene3790;Name=SFV_RS19045;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19045;pseudo=true NC_008258.1 Protein Homology CDS 3529380 3529499 . + 0 ID=cds3708;Parent=gene3790;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:3529425..3529427%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3529555 3530673 . - . ID=gene3791;Name=SFV_RS19050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19050;old_locus_tag=SFV_3463 NC_008258.1 Protein Homology CDS 3529555 3530673 . - 0 ID=cds3709;Parent=gene3791;Dbxref=Genbank:WP_001326754.1;Name=WP_001326754.1;Note=with LivFGHM is involved in the high affinity leucine transport;gbkey=CDS;product=amino acid ABC transporter substrate-binding protein;protein_id=WP_001326754.1;transl_table=11 NC_008258.1 RefSeq gene 3530929 3531783 . - . ID=gene3792;Name=SFV_RS19055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19055;old_locus_tag=SFV_3464 NC_008258.1 Protein Homology CDS 3530929 3531783 . - 0 ID=cds3710;Parent=gene3792;Dbxref=Genbank:WP_000130216.1;Name=WP_000130216.1;Note=binds with the catalytic core of RNA polymerase to produce the holoenzyme%3B this sigma factor is responsible for the expression of heat shock promoters;gbkey=CDS;product=RNA polymerase factor sigma-32;protein_id=WP_000130216.1;transl_table=11 NC_008258.1 RefSeq gene 3532029 3533087 . - . ID=gene3793;Name=ftsX;gbkey=Gene;gene=ftsX;gene_biotype=protein_coding;locus_tag=SFV_RS19060;old_locus_tag=SFV_3465 NC_008258.1 Protein Homology CDS 3532029 3533087 . - 0 ID=cds3711;Parent=gene3793;Dbxref=Genbank:WP_001042003.1;Name=WP_001042003.1;Note=ABC transporter%2C membrane protein;gbkey=CDS;gene=ftsX;product=cell division protein FtsX;protein_id=WP_001042003.1;transl_table=11 NC_008258.1 RefSeq gene 3533080 3533748 . - . ID=gene3794;Name=SFV_RS19065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19065;old_locus_tag=SFV_3466 NC_008258.1 Protein Homology CDS 3533080 3533748 . - 0 ID=cds3712;Parent=gene3794;Dbxref=Genbank:WP_000617723.1;Name=WP_000617723.1;Note=ATP-binding protein of an ATP-binding cassette transporter%3B when bound to FtsX%2C FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions;gbkey=CDS;product=cell division ATP-binding protein FtsE;protein_id=WP_000617723.1;transl_table=11 NC_008258.1 RefSeq gene 3533751 3535176 . - . ID=gene3795;Name=SFV_RS19070;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19070;pseudo=true NC_008258.1 Protein Homology CDS 3533751 3535176 . - 0 ID=cds3713;Parent=gene3795;Note=cell division protein%3B signal recognition protein receptor%3B functions in the targeting and insertion of membrane proteins;exception=annotated by transcript or proteomic data;gbkey=CDS;product=cell division protein FtsY;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3535326 3535922 . + . ID=gene3796;Name=rsmD;gbkey=Gene;gene=rsmD;gene_biotype=protein_coding;locus_tag=SFV_RS19075;old_locus_tag=SFV_3468 NC_008258.1 Protein Homology CDS 3535326 3535922 . + 0 ID=cds3714;Parent=gene3796;Dbxref=Genbank:WP_000743178.1;Name=WP_000743178.1;Note=catalyzes the methylation of 16S rRNA at position G966;gbkey=CDS;gene=rsmD;product=16S rRNA methyltransferase;protein_id=WP_000743178.1;transl_table=11 NC_008258.1 RefSeq gene 3535912 3536181 . + . ID=gene3797;Name=SFV_RS19080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19080;old_locus_tag=SFV_3469 NC_008258.1 Protein Homology CDS 3535912 3536181 . + 0 ID=cds3715;Parent=gene3797;Dbxref=Genbank:WP_001295207.1;Name=WP_001295207.1;gbkey=CDS;product=membrane protein;protein_id=WP_001295207.1;transl_table=11 NC_008258.1 RefSeq gene 3536184 3536543 . - . ID=gene3798;Name=SFV_RS19085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19085;old_locus_tag=SFV_3470 NC_008258.1 Protein Homology CDS 3536184 3536543 . - 0 ID=cds3716;Parent=gene3798;Dbxref=Genbank:WP_000042900.1;Name=WP_000042900.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000042900.1;transl_table=11 NC_008258.1 RefSeq gene 3536684 3537310 . + . ID=gene3799;Name=SFV_RS19090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19090;old_locus_tag=SFV_3471 NC_008258.1 Protein Homology CDS 3536684 3537310 . + 0 ID=cds3717;Parent=gene3799;Dbxref=Genbank:WP_000964719.1;Name=WP_000964719.1;gbkey=CDS;product=membrane protein;protein_id=WP_000964719.1;transl_table=11 NC_008258.1 RefSeq gene 3537384 3539582 . + . ID=gene3800;Name=zntA;gbkey=Gene;gene=zntA;gene_biotype=protein_coding;locus_tag=SFV_RS19095;old_locus_tag=SFV_3472 NC_008258.1 Protein Homology CDS 3537384 3539582 . + 0 ID=cds3718;Parent=gene3800;Dbxref=Genbank:WP_000106529.1;Name=WP_000106529.1;Note=P-type ATPase involved in the export of lead%2C cadmium%2C zinc and mercury;gbkey=CDS;gene=zntA;product=cadmium-transporting ATPase;protein_id=WP_000106529.1;transl_table=11 NC_008258.1 RefSeq gene 3539684 3539929 . - . ID=gene3801;Name=SFV_RS19100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19100;old_locus_tag=SFV_3473 NC_008258.1 Protein Homology CDS 3539684 3539929 . - 0 ID=cds3719;Parent=gene3801;Dbxref=Genbank:WP_000130621.1;Name=WP_000130621.1;Note=TusA%3B transfers sulfur to TusBCD complex%3B involved in thiouridation of U34 position of some tRNAs;gbkey=CDS;product=sulfurtransferase TusA;protein_id=WP_000130621.1;transl_table=11 NC_008258.1 RefSeq gene 3540150 3540815 . + . ID=gene3802;Name=SFV_RS19105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19105;old_locus_tag=SFV_3474 NC_008258.1 Protein Homology CDS 3540150 3540815 . + 0 ID=cds3720;Parent=gene3802;Dbxref=Genbank:WP_001100467.1;Name=WP_001100467.1;gbkey=CDS;product=membrane protein;protein_id=WP_001100467.1;transl_table=11 NC_008258.1 RefSeq gene 3540888 3541445 . + . ID=gene3803;Name=SFV_RS19110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19110;old_locus_tag=SFV_3475 NC_008258.1 Protein Homology CDS 3540888 3541445 . + 0 ID=cds3721;Parent=gene3803;Dbxref=Genbank:WP_001245295.1;Name=WP_001245295.1;gbkey=CDS;product=protein DcrB;protein_id=WP_001245295.1;transl_table=11 NC_008258.1 RefSeq gene 3541449 3542666 . - . ID=gene3804;Name=SFV_RS19115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19115;old_locus_tag=SFV_3476 NC_008258.1 Protein Homology CDS 3541449 3542666 . - 0 ID=cds3722;Parent=gene3804;Dbxref=Genbank:WP_005106000.1;Name=WP_005106000.1;gbkey=CDS;product=MFS transporter;protein_id=WP_005106000.1;transl_table=11 NC_008258.1 RefSeq gene 3542800 3543849 . + . ID=gene3805;Name=SFV_RS19120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19120;old_locus_tag=SFV_3477 NC_008258.1 Protein Homology CDS 3542800 3543849 . + 0 ID=cds3723;Parent=gene3805;Dbxref=Genbank:WP_000449758.1;Name=WP_000449758.1;gbkey=CDS;product=pheromone autoinducer 2 transporter;protein_id=WP_000449758.1;transl_table=11 NC_008258.1 RefSeq gene 3543904 3544491 . + . ID=gene3806;Name=SFV_RS19125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19125;old_locus_tag=SFV_3478 NC_008258.1 Protein Homology CDS 3543904 3544491 . + 0 ID=cds3724;Parent=gene3806;Dbxref=Genbank:WP_000285784.1;Name=WP_000285784.1;gbkey=CDS;product=4'-phosphopantetheinyl transferase;protein_id=WP_000285784.1;transl_table=11 NC_008258.1 RefSeq gene 3544602 3546176 . + . ID=gene3807;Name=SFV_RS19130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19130;old_locus_tag=SFV_3479 NC_008258.1 Protein Homology CDS 3544602 3546176 . + 0 ID=cds3725;Parent=gene3807;Dbxref=Genbank:WP_000953343.1;Name=WP_000953343.1;gbkey=CDS;product=nickel ABC transporter substrate-binding protein;protein_id=WP_000953343.1;transl_table=11 NC_008258.1 RefSeq gene 3546176 3547120 . + . ID=gene3808;Name=SFV_RS19135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19135;old_locus_tag=SFV_3480 NC_008258.1 Protein Homology CDS 3546176 3547120 . + 0 ID=cds3726;Parent=gene3808;Dbxref=Genbank:WP_000947077.1;Name=WP_000947077.1;Note=with NikACDE is involved in nickel transport into the cell;gbkey=CDS;product=nickel ABC transporter permease;protein_id=WP_000947077.1;transl_table=11 NC_008258.1 RefSeq gene 3547117 3547950 . + . ID=gene3809;Name=nikC;gbkey=Gene;gene=nikC;gene_biotype=protein_coding;locus_tag=SFV_RS19140;old_locus_tag=SFV_3481 NC_008258.1 Protein Homology CDS 3547117 3547950 . + 0 ID=cds3727;Parent=gene3809;Dbxref=Genbank:WP_001008974.1;Name=WP_001008974.1;Note=with NikABDE is involved in nickel transport into the cell;gbkey=CDS;gene=nikC;product=nickel ABC transporter permease;protein_id=WP_001008974.1;transl_table=11 NC_008258.1 RefSeq gene 3547950 3548714 . + . ID=gene3810;Name=nikD;gbkey=Gene;gene=nikD;gene_biotype=protein_coding;locus_tag=SFV_RS19145;old_locus_tag=SFV_3482 NC_008258.1 Protein Homology CDS 3547950 3548714 . + 0 ID=cds3728;Parent=gene3810;Dbxref=Genbank:WP_001136248.1;Name=WP_001136248.1;Note=with NikABCE is involved in nickel transport into the cell;gbkey=CDS;gene=nikD;product=nickel import ATP-binding protein NikD;protein_id=WP_001136248.1;transl_table=11 NC_008258.1 RefSeq gene 3548711 3549517 . + . ID=gene3811;Name=nikE;gbkey=Gene;gene=nikE;gene_biotype=protein_coding;locus_tag=SFV_RS19150;old_locus_tag=SFV_3483 NC_008258.1 Protein Homology CDS 3548711 3549517 . + 0 ID=cds3729;Parent=gene3811;Dbxref=Genbank:WP_000173670.1;Name=WP_000173670.1;Note=with NikABCD is involved with nickel transport into the cell;gbkey=CDS;gene=nikE;product=nickel import ATP-binding protein NikE;protein_id=WP_000173670.1;transl_table=11 NC_008258.1 RefSeq gene 3549523 3549924 . + . ID=gene3812;Name=SFV_RS19155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19155;old_locus_tag=SFV_3484 NC_008258.1 Protein Homology CDS 3549523 3549924 . + 0 ID=cds3730;Parent=gene3812;Dbxref=Genbank:WP_001190062.1;Name=WP_001190062.1;Note=Inhibits transcription at high concentrations of nickel;gbkey=CDS;product=nickel-responsive regulator;protein_id=WP_001190062.1;transl_table=11 NC_008258.1 RefSeq gene 3550044 3550403 . - . ID=gene3813;Name=SFV_RS19160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19160;old_locus_tag=SFV_3485 NC_008258.1 Protein Homology CDS 3550044 3550403 . - 0 ID=cds3731;Parent=gene3813;Dbxref=Genbank:WP_000593555.1;Name=WP_000593555.1;gbkey=CDS;product=DNA repair protein HhH-GPD;protein_id=WP_000593555.1;transl_table=11 NC_008258.1 RefSeq gene 3550400 3550675 . - . ID=gene3814;Name=SFV_RS19165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19165 NC_008258.1 Protein Homology CDS 3550400 3550675 . - 0 ID=cds3732;Parent=gene3814;Dbxref=Genbank:WP_001259385.1;Name=WP_001259385.1;gbkey=CDS;product=hexulose-6-phosphate synthase;protein_id=WP_001259385.1;transl_table=11 NC_008258.1 RefSeq gene 3550734 3551858 . - . ID=gene3815;Name=SFV_RS19170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19170;old_locus_tag=SFV_3486 NC_008258.1 Protein Homology CDS 3550734 3551858 . - 0 ID=cds3733;Parent=gene3815;Dbxref=Genbank:WP_001216257.1;Name=WP_001216257.1;gbkey=CDS;product=inner membrane transport permease YhhJ;protein_id=WP_001216257.1;transl_table=11 NC_008258.1 RefSeq gene 3551858 3554593 . - . ID=gene3816;Name=SFV_RS19175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19175;old_locus_tag=SFV_3487 NC_008258.1 Protein Homology CDS 3551858 3554593 . - 0 ID=cds3734;Parent=gene3816;Dbxref=Genbank:WP_000149171.1;Name=WP_000149171.1;gbkey=CDS;product=multidrug ABC transporter ATP-binding protein;protein_id=WP_000149171.1;transl_table=11 NC_008258.1 RefSeq gene 3554590 3555657 . - . ID=gene3817;Name=SFV_RS19180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19180;old_locus_tag=SFV_3488 NC_008258.1 Protein Homology CDS 3554590 3555657 . - 0 ID=cds3735;Parent=gene3817;Dbxref=Genbank:WP_000361470.1;Name=WP_000361470.1;gbkey=CDS;product=membrane protein;protein_id=WP_000361470.1;transl_table=11 NC_008258.1 RefSeq gene 3556023 3557645 . - . ID=gene3818;Name=SFV_RS19185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19185;old_locus_tag=SFV_3489 NC_008258.1 Protein Homology CDS 3556023 3557645 . - 0 ID=cds3736;Parent=gene3818;Dbxref=Genbank:WP_005106002.1;Name=WP_005106002.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106002.1;transl_table=11 NC_008258.1 RefSeq gene 3557907 3559496 . - . ID=gene3819;Name=SFV_RS19190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19190;old_locus_tag=SFV_3490 NC_008258.1 Protein Homology CDS 3557907 3559496 . - 0 ID=cds3737;Parent=gene3819;Dbxref=Genbank:WP_024260312.1;Name=WP_024260312.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260312.1;transl_table=11 NC_008258.1 RefSeq gene 3559483 3559682 . - . ID=gene3820;Name=SFV_RS19195;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19195;pseudo=true NC_008258.1 Protein Homology CDS 3559483 3559682 . - 0 ID=cds3738;Parent=gene3820;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3559811 3559942 . - . ID=gene3821;Name=SFV_RS19200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19200 NC_008258.1 Protein Homology CDS 3559811 3559942 . - 0 ID=cds3739;Parent=gene3821;Dbxref=Genbank:WP_032155607.1;Name=WP_032155607.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155607.1;transl_table=11 NC_008258.1 RefSeq gene 3559993 3560912 . + . ID=gene3822;Name=SFV_RS19205;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19205;pseudo=true NC_008258.1 Protein Homology CDS 3559993 3560912 . + 0 ID=cds3740;Parent=gene3822;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3560999 3561514 . - . ID=gene3823;Name=SFV_RS19210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19210 NC_008258.1 Protein Homology CDS 3560999 3561514 . - 0 ID=cds3741;Parent=gene3823;Dbxref=Genbank:WP_011069548.1;Name=WP_011069548.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069548.1;transl_table=11 NC_008258.1 RefSeq gene 3561468 3562232 . - . ID=gene3824;Name=SFV_RS19215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19215;old_locus_tag=SFV_3492 NC_008258.1 Protein Homology CDS 3561468 3562232 . - 0 ID=cds3742;Parent=gene3824;Dbxref=Genbank:WP_000442144.1;Name=WP_000442144.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000442144.1;transl_table=11 NC_008258.1 RefSeq gene 3562511 3563239 . + . ID=gene3825;Name=SFV_RS19220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19220;old_locus_tag=SFV_3493 NC_008258.1 Protein Homology CDS 3562511 3563239 . + 0 ID=cds3743;Parent=gene3825;Dbxref=Genbank:WP_001067057.1;Name=WP_001067057.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_001067057.1;transl_table=11 NC_008258.1 RefSeq gene 3563346 3563858 . - . ID=gene3826;Name=SFV_RS19225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19225;old_locus_tag=SFV_3494 NC_008258.1 Protein Homology CDS 3563346 3563858 . - 0 ID=cds3744;Parent=gene3826;Dbxref=Genbank:WP_000751953.1;Name=WP_000751953.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000751953.1;transl_table=11 NC_008258.1 RefSeq gene 3563997 3565145 . - . ID=gene3827;Name=SFV_RS19230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19230;old_locus_tag=SFV_3495 NC_008258.1 Protein Homology CDS 3563997 3565145 . - 0 ID=cds3745;Parent=gene3827;Dbxref=Genbank:WP_005104238.1;Name=WP_005104238.1;gbkey=CDS;product=fimbrial usher protein;protein_id=WP_005104238.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3565145 3566478 . + . ID=id551;gbkey=repeat_region NC_008258.1 RefSeq region 3565146 3566476 . + . ID=id552;gbkey=mobile_element NC_008258.1 RefSeq gene 3565237 3565602 . + . ID=gene3828;Name=SFV_RS19235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19235;old_locus_tag=SFV_3496 NC_008258.1 Protein Homology CDS 3565237 3565602 . + 0 ID=cds3746;Parent=gene3828;Dbxref=Genbank:WP_000567848.1;Name=WP_000567848.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567848.1;transl_table=11 NC_008258.1 RefSeq gene 3565560 3566465 . + . ID=gene3829;Name=SFV_RS19240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19240;old_locus_tag=SFV_3497 NC_008258.1 Protein Homology CDS 3565560 3566465 . + 0 ID=cds3747;Parent=gene3829;Dbxref=Genbank:WP_000376511.1;Name=WP_000376511.1;gbkey=CDS;product=integrase;protein_id=WP_000376511.1;transl_table=11 NC_008258.1 RefSeq gene 3566720 3567769 . - . ID=gene3830;Name=SFV_RS19245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19245;old_locus_tag=SFV_3498 NC_008258.1 Protein Homology CDS 3566720 3567769 . - 0 ID=cds3748;Parent=gene3830;Dbxref=Genbank:WP_005099994.1;Name=WP_005099994.1;gbkey=CDS;product=fimbrial Usher family protein;protein_id=WP_005099994.1;transl_table=11 NC_008258.1 RefSeq gene 3567843 3568604 . - . ID=gene3831;Name=SFV_RS19250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19250;old_locus_tag=SFV_3499 NC_008258.1 Protein Homology CDS 3567843 3568604 . - 0 ID=cds3749;Parent=gene3831;Dbxref=Genbank:WP_005090407.1;Name=WP_005090407.1;gbkey=CDS;product=molecular chaperone;protein_id=WP_005090407.1;transl_table=11 NC_008258.1 RefSeq gene 3569072 3569806 . - . ID=gene3832;Name=SFV_RS19255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19255 NC_008258.1 Protein Homology CDS 3569072 3569806 . - 0 ID=cds3750;Parent=gene3832;Dbxref=Genbank:WP_000245840.1;Name=WP_000245840.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_000245840.1;transl_table=11 NC_008258.1 RefSeq gene 3569806 3570714 . - . ID=gene3833;Name=SFV_RS19260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19260;old_locus_tag=SFV_3500 NC_008258.1 Protein Homology CDS 3569806 3570714 . - 0 ID=cds3751;Parent=gene3833;Dbxref=Genbank:WP_001117626.1;Name=WP_001117626.1;gbkey=CDS;product=polymerase;protein_id=WP_001117626.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3571029 3572166 . + . ID=id553;gbkey=repeat_region NC_008258.1 RefSeq region 3571032 3571390 . + . ID=id554;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3571096 3571395 . + . ID=gene3834;Name=SFV_RS19265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19265;old_locus_tag=SFV_3501 NC_008258.1 Protein Homology CDS 3571096 3571395 . + 0 ID=cds3752;Parent=gene3834;Dbxref=Genbank:WP_000088247.1;Name=WP_000088247.1;gbkey=CDS;product=transposase;protein_id=WP_000088247.1;transl_table=11 NC_008258.1 RefSeq region 3571391 3572158 . - . ID=id555;gbkey=mobile_element NC_008258.1 RefSeq gene 3571406 3571798 . - . ID=gene3835;Name=SFV_RS19270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19270;old_locus_tag=SFV_3502 NC_008258.1 Protein Homology CDS 3571406 3571798 . - 0 ID=cds3753;Parent=gene3835;Dbxref=Genbank:WP_044024413.1;Name=WP_044024413.1;gbkey=CDS;product=transposase;protein_id=WP_044024413.1;transl_table=11 NC_008258.1 RefSeq gene 3571828 3572052 . - . ID=gene3836;Name=SFV_RS19275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19275 NC_008258.1 Protein Homology CDS 3571828 3572052 . - 0 ID=cds3754;Parent=gene3836;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3572632 3573831 . - . ID=gene3837;Name=SFV_RS19280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19280;old_locus_tag=SFV_3504 NC_008258.1 Protein Homology CDS 3572632 3573831 . - 0 ID=cds3755;Parent=gene3837;Dbxref=Genbank:WP_000439212.1;Name=WP_000439212.1;gbkey=CDS;product=membrane protein;protein_id=WP_000439212.1;transl_table=11 NC_008258.1 RefSeq gene 3574063 3575562 . + . ID=gene3838;Name=SFV_RS19285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19285;old_locus_tag=SFV_3505 NC_008258.1 Protein Homology CDS 3574063 3575562 . + 0 ID=cds3756;Parent=gene3838;Dbxref=Genbank:WP_000902779.1;Name=WP_000902779.1;Note=involved in the transport of inorganic phosphate;gbkey=CDS;product=phosphate transporter PitA;protein_id=WP_000902779.1;transl_table=11 NC_008258.1 RefSeq gene 3575633 3575968 . - . ID=gene3839;Name=SFV_RS19290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19290;old_locus_tag=SFV_3506 NC_008258.1 Protein Homology CDS 3575633 3575968 . - 0 ID=cds3757;Parent=gene3839;Dbxref=Genbank:WP_000626187.1;Name=WP_000626187.1;Note=ppGpp-dependent%2C membrane associated%2C stress protein produced under conditions of nutrient deprivation%2C osmotic shock and oxidative stress;gbkey=CDS;product=universal stress protein B;protein_id=WP_000626187.1;transl_table=11 NC_008258.1 RefSeq gene 3576359 3576793 . + . ID=gene3840;Name=SFV_RS19295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19295;old_locus_tag=SFV_3507 NC_008258.1 Protein Homology CDS 3576359 3576793 . + 0 ID=cds3758;Parent=gene3840;Dbxref=Genbank:WP_000323571.1;Name=WP_000323571.1;Note=involved in resistance to DNA-damaging agents;gbkey=CDS;product=universal stress protein A;protein_id=WP_000323571.1;transl_table=11 NC_008258.1 RefSeq gene 3577111 3578580 . + . ID=gene3841;Name=tppB;gbkey=Gene;gene=tppB;gene_biotype=pseudogene;gene_synonym=ydgR;locus_tag=SFV_RS19300;pseudo=true NC_008258.1 Protein Homology CDS 3577111 3578580 . + 0 ID=cds3759;Parent=gene3841;Note=mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium%3B member of proton-dependent oligopeptide transport (POT) system family%3B in Escherichia coli this gene is regulated by OmpR although not via osmoregulation;gbkey=CDS;gene=tppB;product=peptide ABC transporter permease;pseudo=true;transl_except=(pos:3578275..3578277%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3578629 3579381 . - . ID=gene3842;Name=SFV_RS19305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19305;old_locus_tag=SFV_3509 NC_008258.1 Protein Homology CDS 3578629 3579381 . - 0 ID=cds3760;Parent=gene3842;Dbxref=Genbank:WP_000686608.1;Name=WP_000686608.1;Note=predicted SAM-dependent methyltransferase;gbkey=CDS;product=ribosomal RNA small subunit methyltransferase J;protein_id=WP_000686608.1;transl_table=11 NC_008258.1 RefSeq gene 3579389 3581431 . - . ID=gene3843;Name=SFV_RS19310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19310;old_locus_tag=SFV_3510 NC_008258.1 Protein Homology CDS 3579389 3581431 . - 0 ID=cds3761;Parent=gene3843;Dbxref=Genbank:WP_005065284.1;Name=WP_005065284.1;gbkey=CDS;product=oligopeptidase A;protein_id=WP_005065284.1;transl_table=11 NC_008258.1 RefSeq gene 3581634 3582476 . + . ID=gene3844;Name=SFV_RS19315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19315;old_locus_tag=SFV_3511 NC_008258.1 Protein Homology CDS 3581634 3582476 . + 0 ID=cds3762;Parent=gene3844;Dbxref=Genbank:WP_005052521.1;Name=WP_005052521.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052521.1;transl_table=11 NC_008258.1 RefSeq gene 3582548 3583900 . + . ID=gene3845;Name=SFV_RS19320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19320;old_locus_tag=SFV_3512 NC_008258.1 Protein Homology CDS 3582548 3583900 . + 0 ID=cds3763;Parent=gene3845;Dbxref=Genbank:WP_000160805.1;Name=WP_000160805.1;Note=catalyzes the reduction of 2 glutathione to glutathione disulfide%3B maintains high levels of reduced glutathione in the cytosol%3B involved in redox regulation and oxidative defense;gbkey=CDS;product=glutathione reductase;protein_id=WP_000160805.1;transl_table=11 NC_008258.1 RefSeq gene 3583954 3584070 . - . ID=gene3846;Name=SFV_RS19325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19325 NC_008258.1 Protein Homology CDS 3583954 3584070 . - 0 ID=cds3764;Parent=gene3846;Dbxref=Genbank:WP_000555608.1;Name=WP_000555608.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000555608.1;transl_table=11 NC_008258.1 RefSeq gene 3584065 3584238 . + . ID=gene3847;Name=SFV_RS19330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19330 NC_008258.1 Protein Homology CDS 3584065 3584238 . + 0 ID=cds3765;Parent=gene3847;Dbxref=Genbank:WP_005064932.1;Name=WP_005064932.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005064932.1;transl_table=11 NC_008258.1 RefSeq gene 3584780 3585133 . + . ID=gene3848;Name=SFV_RS19335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19335;old_locus_tag=SFV_3513 NC_008258.1 Protein Homology CDS 3584780 3585133 . + 0 ID=cds3766;Parent=gene3848;Dbxref=Genbank:WP_000008955.1;Name=WP_000008955.1;Note=regulates the expression of of the arsRBC involved in resistance to arsenic;gbkey=CDS;product=arsenical resistance operon repressor;protein_id=WP_000008955.1;transl_table=11 NC_008258.1 RefSeq gene 3585187 3586476 . + . ID=gene3849;Name=SFV_RS19340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19340;old_locus_tag=SFV_3514 NC_008258.1 Protein Homology CDS 3585187 3586476 . + 0 ID=cds3767;Parent=gene3849;Dbxref=Genbank:WP_000922639.1;Name=WP_000922639.1;gbkey=CDS;product=arsenical pump membrane protein;protein_id=WP_000922639.1;transl_table=11 NC_008258.1 RefSeq gene 3586489 3586914 . + . ID=gene3850;Name=SFV_RS19345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19345;old_locus_tag=SFV_3515 NC_008258.1 Protein Homology CDS 3586489 3586914 . + 0 ID=cds3768;Parent=gene3850;Dbxref=Genbank:WP_000065769.1;Name=WP_000065769.1;gbkey=CDS;product=arsenate reductase;protein_id=WP_000065769.1;transl_table=11 NC_008258.1 RefSeq gene 3587048 3587344 . - . ID=gene3851;Name=SFV_RS19350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19350 NC_008258.1 Protein Homology CDS 3587048 3587344 . - 0 ID=cds3769;Parent=gene3851;Dbxref=Genbank:WP_001175589.1;Name=WP_001175589.1;gbkey=CDS;product=ArsR family transcriptional regulator;protein_id=WP_001175589.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3587486 3588259 . + . ID=id556;gbkey=repeat_region NC_008258.1 RefSeq region 3587490 3588257 . + . ID=id557;gbkey=mobile_element NC_008258.1 RefSeq gene 3587596 3587820 . + . ID=gene3852;Name=SFV_RS19355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19355 NC_008258.1 Protein Homology CDS 3587596 3587820 . + 0 ID=cds3770;Parent=gene3852;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3587847 3588242 . + . ID=gene3853;Name=SFV_RS19360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19360 NC_008258.1 Protein Homology CDS 3587847 3588242 . + 0 ID=cds3771;Parent=gene3853;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 3588267 3589229 . + . ID=gene3854;Name=SFV_RS19365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19365;old_locus_tag=SFV_3518 NC_008258.1 Protein Homology CDS 3588267 3589229 . + 0 ID=cds3772;Parent=gene3854;Dbxref=Genbank:WP_000497515.1;Name=WP_000497515.1;gbkey=CDS;product=transporter;protein_id=WP_000497515.1;transl_table=11 NC_008258.1 RefSeq gene 3589810 3591033 . + . ID=gene3855;Name=SFV_RS19370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19370;old_locus_tag=SFV_3519 NC_008258.1 Protein Homology CDS 3589810 3591033 . + 0 ID=cds3773;Parent=gene3855;Dbxref=Genbank:WP_000020616.1;Name=WP_000020616.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000020616.1;transl_table=11 NC_008258.1 RefSeq gene 3591280 3591846 . + . ID=gene3856;Name=SFV_RS19375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19375 NC_008258.1 Protein Homology CDS 3591280 3591846 . + 0 ID=cds3774;Parent=gene3856;Dbxref=Genbank:WP_001057453.1;Name=WP_001057453.1;gbkey=CDS;product=outer membrane protein slp;protein_id=WP_001057453.1;transl_table=11 NC_008258.1 RefSeq gene 3592002 3592532 . + . ID=gene3857;Name=SFV_RS19380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19380;old_locus_tag=SFV_3521 NC_008258.1 Protein Homology CDS 3592002 3592532 . + 0 ID=cds3775;Parent=gene3857;Dbxref=Genbank:WP_000478623.1;Name=WP_000478623.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000478623.1;transl_table=11 NC_008258.1 RefSeq gene 3592574 3593220 . - . ID=gene3858;Name=SFV_RS19385;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19385;pseudo=true NC_008258.1 Protein Homology CDS 3592574 3593220 . - 0 ID=cds3776;Parent=gene3858;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3593284 3593610 . - . ID=gene3859;Name=hdeB;gbkey=Gene;gene=hdeB;gene_biotype=protein_coding;locus_tag=SFV_RS19390;old_locus_tag=SFV_3523 NC_008258.1 Protein Homology CDS 3593284 3593610 . - 0 ID=cds3777;Parent=gene3859;Dbxref=Genbank:WP_001298717.1;Name=WP_001298717.1;gbkey=CDS;gene=hdeB;product=acid stress chaperone HdeB;protein_id=WP_001298717.1;transl_table=11 NC_008258.1 RefSeq gene 3593726 3594058 . - . ID=gene3860;Name=SFV_RS19395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19395;old_locus_tag=SFV_3524 NC_008258.1 Protein Homology CDS 3593726 3594058 . - 0 ID=cds3778;Parent=gene3860;Dbxref=Genbank:WP_000756550.1;Name=WP_000756550.1;Note=inactive form;gbkey=CDS;product=acid stress chaperone HdeA;protein_id=WP_000756550.1;transl_table=11 NC_008258.1 RefSeq gene 3594313 3594885 . + . ID=gene3861;Name=SFV_RS19400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19400;old_locus_tag=SFV_3525 NC_008258.1 Protein Homology CDS 3594313 3594885 . + 0 ID=cds3779;Parent=gene3861;Dbxref=Genbank:WP_000965672.1;Name=WP_000965672.1;gbkey=CDS;product=protein HdeD;protein_id=WP_000965672.1;transl_table=11 NC_008258.1 RefSeq gene 3595684 3596211 . + . ID=gene3862;Name=SFV_RS19405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19405;old_locus_tag=SFV_3526 NC_008258.1 Protein Homology CDS 3595684 3596211 . + 0 ID=cds3780;Parent=gene3862;Dbxref=Genbank:WP_000576690.1;Name=WP_000576690.1;gbkey=CDS;product=transcriptional regulator GadE;protein_id=WP_000576690.1;transl_table=11 NC_008258.1 RefSeq gene 3596212 3596490 . - . ID=gene3863;Name=SFV_RS19410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19410 NC_008258.1 Protein Homology CDS 3596212 3596490 . - 0 ID=cds3781;Parent=gene3863;Dbxref=Genbank:WP_001205330.1;Name=WP_001205330.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001205330.1;transl_table=11 NC_008258.1 RefSeq gene 3596550 3597467 . + . ID=gene3864;Name=SFV_RS19415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19415 NC_008258.1 Protein Homology CDS 3596550 3597467 . + 0 ID=cds3782;Parent=gene3864;Dbxref=Genbank:WP_001081980.1;Name=WP_001081980.1;gbkey=CDS;product=multidrug transporter;protein_id=WP_001081980.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3597455 3599730 . + . ID=id558;gbkey=repeat_region NC_008258.1 RefSeq region 3597593 3598360 . - . ID=id559;gbkey=mobile_element NC_008258.1 RefSeq gene 3597608 3598111 . - . ID=gene3865;Name=SFV_RS19420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19420;old_locus_tag=SFV_3528 NC_008258.1 Protein Homology CDS 3597608 3598111 . - 0 ID=cds3783;Parent=gene3865;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 3598186 3598389 . + . ID=gene3866;Name=SFV_RS19425;end_range=3598389,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19425;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3598186 3598389 . + 0 ID=cds3784;Parent=gene3866;end_range=3598389,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3598360 3598854 . + . ID=gene3867;Name=SFV_RS19430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19430 NC_008258.1 Protein Homology CDS 3598360 3598854 . + 0 ID=cds3785;Parent=gene3867;Dbxref=Genbank:WP_029717998.1;Name=WP_029717998.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_029717998.1;transl_table=11 NC_008258.1 RefSeq region 3598362 3599728 . + . ID=id560;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3598851 3599702 . + . ID=gene3868;Name=SFV_RS19435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19435;old_locus_tag=SFV_3530 NC_008258.1 Protein Homology CDS 3598851 3599702 . + 0 ID=cds3786;Parent=gene3868;Dbxref=Genbank:WP_000866383.1;Name=WP_000866383.1;gbkey=CDS;product=integrase;protein_id=WP_000866383.1;transl_table=11 NC_008258.1 RefSeq gene 3599804 3599956 . + . ID=gene3869;Name=SFV_RS19440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19440 NC_008258.1 Protein Homology CDS 3599804 3599956 . + 0 ID=cds3787;Parent=gene3869;Dbxref=Genbank:WP_001135734.1;Name=WP_001135734.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001135734.1;transl_table=11 NC_008258.1 RefSeq gene 3600143 3600355 . - . ID=gene3870;Name=SFV_RS19445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19445;old_locus_tag=SFV_3531 NC_008258.1 Protein Homology CDS 3600143 3600355 . - 0 ID=cds3788;Parent=gene3870;Dbxref=Genbank:WP_000014594.1;Name=WP_000014594.1;gbkey=CDS;product=cold-shock protein;protein_id=WP_000014594.1;transl_table=11 NC_008258.1 RefSeq gene 3600636 3600926 . - . ID=gene3871;Name=SFV_RS19450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19450;old_locus_tag=SFV_3532 NC_008258.1 Protein Homology CDS 3600636 3600926 . - 0 ID=cds3789;Parent=gene3871;Dbxref=Genbank:WP_005077766.1;Name=WP_005077766.1;gbkey=CDS;product=XRE family transcriptional regulator;protein_id=WP_005077766.1;transl_table=11 NC_008258.1 RefSeq gene 3601360 3602070 . + . ID=gene3872;Name=SFV_RS19455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19455;old_locus_tag=SFV_3533 NC_008258.1 Protein Homology CDS 3601360 3602070 . + 0 ID=cds3790;Parent=gene3872;Dbxref=Genbank:WP_000190516.1;Name=WP_000190516.1;gbkey=CDS;product=DUF3053 domain-containing protein;protein_id=WP_000190516.1;transl_table=11 NC_008258.1 RefSeq gene 3602120 3603094 . - . ID=gene3873;Name=SFV_RS19460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19460;old_locus_tag=SFV_3534 NC_008258.1 Protein Homology CDS 3602120 3603094 . - 0 ID=cds3791;Parent=gene3873;Dbxref=Genbank:WP_000804995.1;Name=WP_000804995.1;Note=catalyzes the formation of glycolate from glyoxylate and glycerate from hydroxypyruvate;gbkey=CDS;product=glyoxylate/hydroxypyruvate reductase B;protein_id=WP_000804995.1;transl_table=11 NC_008258.1 RefSeq gene 3603198 3603848 . - . ID=gene3874;Name=SFV_RS19465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19465;old_locus_tag=SFV_3535 NC_008258.1 Protein Homology CDS 3603198 3603848 . - 0 ID=cds3792;Parent=gene3874;Dbxref=Genbank:WP_000470321.1;Name=WP_000470321.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000470321.1;transl_table=11 NC_008258.1 RefSeq gene 3604065 3606344 . + . ID=gene3875;Name=SFV_RS19470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19470;old_locus_tag=SFV_3536 NC_008258.1 Protein Homology CDS 3604065 3606344 . + 0 ID=cds3793;Parent=gene3875;Dbxref=Genbank:WP_000959818.1;Name=WP_000959818.1;Note=catalyzes the reduction of trimethylamine-N-oxide to form trimethylamine;gbkey=CDS;product=biotin sulfoxide reductase;protein_id=WP_000959818.1;transl_table=11 NC_008258.1 RefSeq gene 3606313 3606753 . - . ID=gene3876;Name=SFV_RS19475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19475;old_locus_tag=SFV_3537 NC_008258.1 Protein Homology CDS 3606313 3606753 . - 0 ID=cds3794;Parent=gene3876;Dbxref=Genbank:WP_000617478.1;Name=WP_000617478.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_000617478.1;transl_table=11 NC_008258.1 RefSeq gene 3606750 3607313 . - . ID=gene3877;Name=SFV_RS19480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19480;old_locus_tag=SFV_3539 NC_008258.1 Protein Homology CDS 3606750 3607313 . - 0 ID=cds3795;Parent=gene3877;Dbxref=Genbank:WP_000438969.1;Name=WP_000438969.1;gbkey=CDS;product=DNA-3-methyladenine glycosylase;protein_id=WP_000438969.1;transl_table=11 NC_008258.1 RefSeq gene 3607471 3608169 . + . ID=gene3878;Name=SFV_RS19485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19485;old_locus_tag=SFV_3538 NC_008258.1 Protein Homology CDS 3607471 3608169 . + 0 ID=cds3796;Parent=gene3878;Dbxref=Genbank:WP_001296791.1;Name=WP_001296791.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296791.1;transl_table=11 NC_008258.1 RefSeq gene 3608398 3609606 . + . ID=gene3879;Name=SFV_RS19490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19490;old_locus_tag=SFV_3540 NC_008258.1 Protein Homology CDS 3608398 3609606 . + 0 ID=cds3797;Parent=gene3879;Dbxref=Genbank:WP_000189008.1;Name=WP_000189008.1;gbkey=CDS;product=membrane protein;protein_id=WP_000189008.1;transl_table=11 NC_008258.1 RefSeq gene 3609930 3611621 . + . ID=gene3880;Name=SFV_RS19495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19495;old_locus_tag=SFV_3541 NC_008258.1 Protein Homology CDS 3609930 3611621 . + 0 ID=cds3798;Parent=gene3880;Dbxref=Genbank:WP_001269239.1;Name=WP_001269239.1;Note=catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide;gbkey=CDS;product=phosphoethanolamine transferase;protein_id=WP_001269239.1;transl_table=11 NC_008258.1 RefSeq gene 3611713 3611789 . + . ID=gene3881;Name=SFV_RS19500;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS19500;old_locus_tag=SFV_3542 NC_008258.1 tRNAscan-SE tRNA 3611713 3611789 . + . ID=rna82;Parent=gene3881;anticodon=(pos:3611747..3611749);gbkey=tRNA;product=tRNA-Pro NC_008258.1 tRNAscan-SE exon 3611713 3611789 . + . ID=id561;Parent=rna82;anticodon=(pos:3611747..3611749);gbkey=tRNA;product=tRNA-Pro NC_008258.1 RefSeq gene 3611844 3612182 . + . ID=gene3882;Name=SFV_RS19505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19505 NC_008258.1 Protein Homology CDS 3611844 3612182 . + 0 ID=cds3799;Parent=gene3882;Dbxref=Genbank:WP_001260552.1;Name=WP_001260552.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001260552.1;transl_table=11 NC_008258.1 RefSeq gene 3612534 3614141 . + . ID=gene3883;Name=SFV_RS19510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19510;old_locus_tag=SFV_3543 NC_008258.1 Protein Homology CDS 3612534 3614141 . + 0 ID=cds3800;Parent=gene3883;Dbxref=Genbank:WP_001222888.1;Name=WP_001222888.1;Note=DppABCDF is involved in the transport of dipeptides%3B also binds heme and mediates chemotaxis to dipeptides;gbkey=CDS;product=periplasmic dipeptide transporter;protein_id=WP_001222888.1;transl_table=11 NC_008258.1 RefSeq gene 3614204 3614431 . - . ID=gene3884;Name=SFV_RS19515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19515 NC_008258.1 Protein Homology CDS 3614204 3614431 . - 0 ID=cds3801;Parent=gene3884;Dbxref=Genbank:WP_000198578.1;Name=WP_000198578.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000198578.1;transl_table=11 NC_008258.1 RefSeq gene 3614449 3615468 . + . ID=gene3885;Name=SFV_RS19520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19520;old_locus_tag=SFV_3544 NC_008258.1 Protein Homology CDS 3614449 3615468 . + 0 ID=cds3802;Parent=gene3885;Dbxref=Genbank:WP_000938867.1;Name=WP_000938867.1;gbkey=CDS;product=peptide ABC transporter permease;protein_id=WP_000938867.1;transl_table=11 NC_008258.1 RefSeq gene 3615478 3616381 . + . ID=gene3886;Name=SFV_RS19525;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19525;pseudo=true NC_008258.1 Protein Homology CDS 3615478 3616381 . + 0 ID=cds3803;Parent=gene3886;exception=annotated by transcript or proteomic data;gbkey=CDS;product=peptide transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3616392 3617375 . + . ID=gene3887;Name=dppD;gbkey=Gene;gene=dppD;gene_biotype=protein_coding;locus_tag=SFV_RS19530;old_locus_tag=SFV_3546 NC_008258.1 Protein Homology CDS 3616392 3617375 . + 0 ID=cds3804;Parent=gene3887;Dbxref=Genbank:WP_001196486.1;Name=WP_001196486.1;Note=DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF;gbkey=CDS;gene=dppD;product=dipeptide transport ATP-binding protein DppD;protein_id=WP_001196486.1;transl_table=11 NC_008258.1 RefSeq gene 3617372 3618376 . + . ID=gene3888;Name=dppF;gbkey=Gene;gene=dppF;gene_biotype=protein_coding;locus_tag=SFV_RS19535;old_locus_tag=SFV_3547 NC_008258.1 Protein Homology CDS 3617372 3618376 . + 0 ID=cds3805;Parent=gene3888;Dbxref=Genbank:WP_000107041.1;Name=WP_000107041.1;Note=Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides;gbkey=CDS;gene=dppF;product=peptide ABC transporter ATP-binding protein;protein_id=WP_000107041.1;transl_table=11 NC_008258.1 RefSeq gene 3618406 3619677 . - . ID=gene3889;Name=SFV_RS19540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19540;old_locus_tag=SFV_3548 NC_008258.1 Protein Homology CDS 3618406 3619677 . - 0 ID=cds3806;Parent=gene3889;Dbxref=Genbank:WP_005072070.1;Name=WP_005072070.1;gbkey=CDS;product=transporter;protein_id=WP_005072070.1;transl_table=11 NC_008258.1 RefSeq gene 3619827 3619988 . + . ID=gene3890;Name=SFV_RS19545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19545 NC_008258.1 Protein Homology CDS 3619827 3619988 . + 0 ID=cds3807;Parent=gene3890;Dbxref=Genbank:WP_032155594.1;Name=WP_032155594.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155594.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3619952 3621310 . + . ID=id562;gbkey=repeat_region NC_008258.1 RefSeq gene 3620093 3620260 . + . ID=gene3891;Name=SFV_RS19550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19550 NC_008258.1 Protein Homology CDS 3620093 3620260 . + 0 ID=cds3808;Parent=gene3891;Dbxref=Genbank:WP_005072073.1;Name=WP_005072073.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005072073.1;transl_table=11 NC_008258.1 RefSeq gene 3620576 3620743 . + . ID=gene3892;Name=SFV_RS19555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19555 NC_008258.1 Protein Homology CDS 3620576 3620743 . + 0 ID=cds3809;Parent=gene3892;Dbxref=Genbank:WP_001296798.1;Name=WP_001296798.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296798.1;transl_table=11 NC_008258.1 RefSeq gene 3621059 3621226 . + . ID=gene3893;Name=SFV_RS19560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19560 NC_008258.1 Protein Homology CDS 3621059 3621226 . + 0 ID=cds3810;Parent=gene3893;Dbxref=Genbank:WP_001300922.1;Name=WP_001300922.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001300922.1;transl_table=11 NC_008258.1 RefSeq gene 3621313 3622992 . - . ID=gene3894;Name=SFV_RS19565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19565;old_locus_tag=SFV_3549 NC_008258.1 Protein Homology CDS 3621313 3622992 . - 0 ID=cds3811;Parent=gene3894;Dbxref=Genbank:WP_000191558.1;Name=WP_000191558.1;gbkey=CDS;product=membrane protein;protein_id=WP_000191558.1;transl_table=11 NC_008258.1 RefSeq gene 3622989 3623180 . - . ID=gene3895;Name=SFV_RS19570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19570;old_locus_tag=SFV_3550 NC_008258.1 Protein Homology CDS 3622989 3623180 . - 0 ID=cds3812;Parent=gene3895;Dbxref=Genbank:WP_000988299.1;Name=WP_000988299.1;gbkey=CDS;product=membrane protein;protein_id=WP_000988299.1;transl_table=11 NC_008258.1 RefSeq gene 3623177 3624265 . - . ID=gene3896;Name=SFV_RS19575;end_range=3624265,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19575;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3623177 3624265 . - 0 ID=cds3813;Parent=gene3896;Note=required for cellulose biosynthesis;end_range=3624265,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=cellulose biosynthesis protein BcsE;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3624257 3625032 . + . ID=id563;gbkey=repeat_region NC_008258.1 RefSeq region 3624261 3625028 . + . ID=id564;gbkey=mobile_element NC_008258.1 RefSeq gene 3624367 3624591 . + . ID=gene3897;Name=SFV_RS19580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19580 NC_008258.1 Protein Homology CDS 3624367 3624591 . + 0 ID=cds3814;Parent=gene3897;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3624621 3625013 . + . ID=gene3898;Name=SFV_RS19585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19585 NC_008258.1 Protein Homology CDS 3624621 3625013 . + 0 ID=cds3815;Parent=gene3898;Dbxref=Genbank:WP_044024418.1;Name=WP_044024418.1;gbkey=CDS;product=transposase;protein_id=WP_044024418.1;transl_table=11 NC_008258.1 RefSeq gene 3625022 3625513 . - . ID=gene3899;Name=SFV_RS19590;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19590;partial=true;pseudo=true;start_range=.,3625022 NC_008258.1 Protein Homology CDS 3625022 3625513 . - 0 ID=cds3816;Parent=gene3899;Note=required for cellulose biosynthesis;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=cellulose biosynthesis protein BcsE;pseudo=true;start_range=.,3625022;transl_table=11 NC_008258.1 RefSeq gene 3625798 3625986 . + . ID=gene3900;Name=SFV_RS19595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19595;old_locus_tag=SFV_3553 NC_008258.1 Protein Homology CDS 3625798 3625986 . + 0 ID=cds3817;Parent=gene3900;Dbxref=Genbank:WP_001063318.1;Name=WP_001063318.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001063318.1;transl_table=11 NC_008258.1 RefSeq gene 3625998 3626750 . + . ID=gene3901;Name=SFV_RS19600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19600;old_locus_tag=SFV_3554 NC_008258.1 Protein Homology CDS 3625998 3626750 . + 0 ID=cds3818;Parent=gene3901;Dbxref=Genbank:WP_000279498.1;Name=WP_000279498.1;gbkey=CDS;product=cell division protein;protein_id=WP_000279498.1;transl_table=11 NC_008258.1 RefSeq gene 3626747 3629142 . + . ID=gene3902;Name=bcsA;gbkey=Gene;gene=bcsA;gene_biotype=pseudogene;locus_tag=SFV_RS19605;pseudo=true NC_008258.1 Protein Homology CDS 3626747 3629142 . + 0 ID=cds3819;Parent=gene3902;Note=polymerizes uridine 5'-diphosphate glucose to cellulose%3B acts with BcsB%2C BcsZ and BcsC in cellulose biosynthesis;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=bcsA;product=cellulose synthase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3629375 3631714 . + . ID=gene3903;Name=SFV_RS19610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19610;old_locus_tag=SFV_3556 NC_008258.1 Protein Homology CDS 3629375 3631714 . + 0 ID=cds3820;Parent=gene3903;Dbxref=Genbank:WP_024260313.1;Name=WP_024260313.1;Note=binds the cellulose synthase activator%2C bis-(3'-5') cyclic diguanylic acid (c-di-GMP);gbkey=CDS;product=cellulose synthase;protein_id=WP_024260313.1;transl_table=11 NC_008258.1 RefSeq gene 3631721 3632827 . + . ID=gene3904;Name=SFV_RS19615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19615;old_locus_tag=SFV_3557 NC_008258.1 Protein Homology CDS 3631721 3632827 . + 0 ID=cds3821;Parent=gene3904;Dbxref=Genbank:WP_005052370.1;Name=WP_005052370.1;Note=catalyzes the hydrolysis of 1%2C4-beta-D-glucosidic linkages in cellulose%2C lichenin and cereal beta-D-glucans;gbkey=CDS;product=endonuclease III;protein_id=WP_005052370.1;transl_table=11 NC_008258.1 RefSeq gene 3632886 3635138 . + . ID=gene3905;Name=SFV_RS19620;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19620;partial=true;pseudo=true;start_range=.,3632886 NC_008258.1 Protein Homology CDS 3632886 3635138 . + 0 ID=cds3822;Parent=gene3905;Note=cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium%3B the cellulose biosynthesis genes bcsA%2C bcsB%2C bcsZ and bcsC are constitutively transcribed%2C however%2C cellulose synthesis is dependent on the expression of adrA;gbkey=CDS;partial=true;product=cellulose synthase;pseudo=true;start_range=.,3632886;transl_except=(pos:3633504..3633506%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3635253 3637208 . + . ID=gene3906;Name=SFV_RS19625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19625;old_locus_tag=SFV_3559 NC_008258.1 Protein Homology CDS 3635253 3637208 . + 0 ID=cds3823;Parent=gene3906;Dbxref=Genbank:WP_005106016.1;Name=WP_005106016.1;Note=HmsP in Yersinia pestis plays a role in invasion of epithelial cells%3B the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation%3B inner membrane protein;gbkey=CDS;product=biofilm formation regulator HmsP;protein_id=WP_005106016.1;transl_table=11 NC_008258.1 RefSeq gene 3637393 3638679 . + . ID=gene3907;Name=SFV_RS19630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19630;old_locus_tag=SFV_3560 NC_008258.1 Protein Homology CDS 3637393 3638679 . + 0 ID=cds3824;Parent=gene3907;Dbxref=Genbank:WP_000858214.1;Name=WP_000858214.1;Note=involved in the transport of C4-dicarboxylates across the membrane;gbkey=CDS;product=C4-dicarboxylate ABC transporter;protein_id=WP_000858214.1;transl_table=11 NC_008258.1 RefSeq gene 3638900 3640396 . + . ID=gene3908;Name=SFV_RS19635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19635;old_locus_tag=SFV_3561 NC_008258.1 Protein Homology CDS 3638900 3640396 . + 0 ID=cds3825;Parent=gene3908;Dbxref=Genbank:WP_001161570.1;Name=WP_001161570.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001161570.1;transl_table=11 NC_008258.1 RefSeq gene 3640492 3641421 . - . ID=gene3909;Name=SFV_RS19640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19640;old_locus_tag=SFV_3562 NC_008258.1 Protein Homology CDS 3640492 3641421 . - 0 ID=cds3826;Parent=gene3909;Dbxref=Genbank:WP_000037560.1;Name=WP_000037560.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate-6-phosphate from 2-dehydro-3-deoxy-D-gluconate;gbkey=CDS;product=ketodeoxygluconokinase;protein_id=WP_000037560.1;transl_table=11 NC_008258.1 RefSeq gene 3641505 3641699 . - . ID=gene3910;Name=SFV_RS19645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19645 NC_008258.1 Protein Homology CDS 3641505 3641699 . - 0 ID=cds3827;Parent=gene3910;Dbxref=Genbank:WP_001328969.1;Name=WP_001328969.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001328969.1;transl_table=11 NC_008258.1 RefSeq gene 3641653 3642420 . + . ID=gene3911;Name=SFV_RS19650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19650;old_locus_tag=SFV_3563 NC_008258.1 Protein Homology CDS 3641653 3642420 . + 0 ID=cds3828;Parent=gene3911;Dbxref=Genbank:WP_005106017.1;Name=WP_005106017.1;Note=in Escherichia coli this protein is involved in flagellar function;gbkey=CDS;product=cyclic di-GMP phosphodiesterase;protein_id=WP_005106017.1;transl_table=11 NC_008258.1 RefSeq gene 3642490 3644550 . + . ID=gene3912;Name=SFV_RS19655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19655;old_locus_tag=SFV_3564 NC_008258.1 Protein Homology CDS 3642490 3644550 . + 0 ID=cds3829;Parent=gene3912;Dbxref=Genbank:WP_005106018.1;Name=WP_005106018.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106018.1;transl_table=11 NC_008258.1 RefSeq gene 3644732 3646054 . - . ID=gene3913;Name=SFV_RS19660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19660;old_locus_tag=SFV_3565 NC_008258.1 Protein Homology CDS 3644732 3646054 . - 0 ID=cds3830;Parent=gene3913;Dbxref=Genbank:WP_001149006.1;Name=WP_001149006.1;gbkey=CDS;product=transporter;protein_id=WP_001149006.1;transl_table=11 NC_008258.1 RefSeq gene 3646465 3647478 . - . ID=gene3914;Name=SFV_RS19665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19665;old_locus_tag=SFV_3566 NC_008258.1 Protein Homology CDS 3646465 3647478 . - 0 ID=cds3831;Parent=gene3914;Dbxref=Genbank:WP_000191257.1;Name=WP_000191257.1;gbkey=CDS;product=membrane protein;protein_id=WP_000191257.1;transl_table=11 NC_008258.1 RefSeq gene 3647527 3648426 . - . ID=gene3915;Name=SFV_RS19670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19670;old_locus_tag=SFV_3567 NC_008258.1 Protein Homology CDS 3647527 3648426 . - 0 ID=cds3832;Parent=gene3915;Dbxref=Genbank:WP_000357791.1;Name=WP_000357791.1;gbkey=CDS;product=LysR family transcriptional regulator;protein_id=WP_000357791.1;transl_table=11 NC_008258.1 RefSeq gene 3648946 3649548 . + . ID=gene3916;Name=SFV_RS19675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19675;old_locus_tag=SFV_3568 NC_008258.1 Protein Homology CDS 3648946 3649548 . + 0 ID=cds3833;Parent=gene3916;Dbxref=Genbank:WP_001167660.1;Name=WP_001167660.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_001167660.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3649548 3650983 . + . ID=id565;gbkey=repeat_region NC_008258.1 RefSeq region 3649550 3650977 . - . ID=id566;gbkey=mobile_element NC_008258.1 RefSeq gene 3649564 3650892 . - . ID=gene3917;Name=SFV_RS19680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19680;old_locus_tag=SFV_3569 NC_008258.1 Protein Homology CDS 3649564 3650892 . - 0 ID=cds3834;Parent=gene3917;Dbxref=Genbank:WP_000547274.1;Name=WP_000547274.1;gbkey=CDS;product=transposase;protein_id=WP_000547274.1;transl_table=11 NC_008258.1 RefSeq gene 3651037 3652686 . - . ID=gene3918;Name=treF;gbkey=Gene;gene=treF;gene_biotype=protein_coding;locus_tag=SFV_RS19685;old_locus_tag=SFV_3570 NC_008258.1 Protein Homology CDS 3651037 3652686 . - 0 ID=cds3835;Parent=gene3918;Dbxref=Genbank:WP_000934208.1;Name=WP_000934208.1;Note=cytoplasmic%3B catalyzes the hydrolysis of trehalose to glucose;gbkey=CDS;gene=treF;product=trehalase;protein_id=WP_000934208.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3652899 3653674 . + . ID=id567;gbkey=repeat_region NC_008258.1 RefSeq region 3652902 3653669 . + . ID=id568;gbkey=mobile_element NC_008258.1 RefSeq gene 3653008 3653232 . + . ID=gene3919;Name=SFV_RS19690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19690 NC_008258.1 Protein Homology CDS 3653008 3653232 . + 0 ID=cds3836;Parent=gene3919;Dbxref=Genbank:WP_001243682.1;Name=WP_001243682.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001243682.1;transl_table=11 NC_008258.1 RefSeq gene 3653259 3653654 . + . ID=gene3920;Name=SFV_RS19695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19695 NC_008258.1 Protein Homology CDS 3653259 3653654 . + 0 ID=cds3837;Parent=gene3920;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 3653670 3654077 . - . ID=gene3921;Name=SFV_RS19700;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19700;partial=true;pseudo=true;start_range=.,3653670 NC_008258.1 Protein Homology CDS 3653670 3654077 . - 0 ID=cds3838;Parent=gene3921;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3653670;transl_except=(pos:complement(3653808..3653810)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3654178 3654777 . + . ID=gene3922;Name=SFV_RS19705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19705;old_locus_tag=SFV_3574 NC_008258.1 Protein Homology CDS 3654178 3654777 . + 0 ID=cds3839;Parent=gene3922;Dbxref=Genbank:WP_000802226.1;Name=WP_000802226.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000802226.1;transl_table=11 NC_008258.1 RefSeq gene 3654885 3655652 . + . ID=gene3923;Name=SFV_RS19710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19710;old_locus_tag=SFV_3575 NC_008258.1 Protein Homology CDS 3654885 3655652 . + 0 ID=cds3840;Parent=gene3923;Dbxref=Genbank:WP_001216325.1;Name=WP_001216325.1;Note=Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate;gbkey=CDS;product=triosephosphate isomerase;protein_id=WP_001216325.1;transl_table=11 NC_008258.1 RefSeq gene 3655707 3656462 . - . ID=gene3924;Name=SFV_RS19715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19715 NC_008258.1 Protein Homology CDS 3655707 3656462 . - 0 ID=cds3841;Parent=gene3924;Dbxref=Genbank:WP_000708994.1;Name=WP_000708994.1;gbkey=CDS;product=CDP-diacylglycerol pyrophosphatase;protein_id=WP_000708994.1;transl_table=11 NC_008258.1 RefSeq gene 3656569 3657558 . - . ID=gene3925;Name=SFV_RS19720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19720;old_locus_tag=SFV_3577 NC_008258.1 Protein Homology CDS 3656569 3657558 . - 0 ID=cds3842;Parent=gene3925;Dbxref=Genbank:WP_001045689.1;Name=WP_001045689.1;gbkey=CDS;product=sulfate-binding protein;protein_id=WP_001045689.1;transl_table=11 NC_008258.1 RefSeq gene 3657878 3658840 . - . ID=gene3926;Name=SFV_RS19725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19725;old_locus_tag=SFV_3578 NC_008258.1 Protein Homology CDS 3657878 3658840 . - 0 ID=cds3843;Parent=gene3926;Dbxref=Genbank:WP_000591795.1;Name=WP_000591795.1;Note=catalyzes the formation of D-fructose 1%2C6-bisphosphate from D-fructose 6-phosphate in glycolysis;gbkey=CDS;product=ATP-dependent 6-phosphofructokinase;protein_id=WP_000591795.1;transl_table=11 NC_008258.1 RefSeq gene 3659021 3659923 . - . ID=gene3927;Name=fieF;gbkey=Gene;gene=fieF;gene_biotype=protein_coding;gene_synonym=yiiP;locus_tag=SFV_RS19730;old_locus_tag=SFV_3579 NC_008258.1 Protein Homology CDS 3659021 3659923 . - 0 ID=cds3844;Parent=gene3927;Dbxref=Genbank:WP_001076750.1;Name=WP_001076750.1;Note=member of cation diffusion facilitator family%3B CDF%3B membrane-bound%3B induced by both zinc and iron%2C but does not induce resistance to zinc%3B can transport zinc(II) in a proton-dependent manner%3B instead this protein induces iron resistance%3B forms dimers;gbkey=CDS;gene=fieF;product=cation-efflux pump FieF;protein_id=WP_001076750.1;transl_table=11 NC_008258.1 RefSeq gene 3660071 3660571 . - . ID=gene3928;Name=cpxP;gbkey=Gene;gene=cpxP;gene_biotype=protein_coding;locus_tag=SFV_RS19735;old_locus_tag=SFV_3580 NC_008258.1 Protein Homology CDS 3660071 3660571 . - 0 ID=cds3845;Parent=gene3928;Dbxref=Genbank:WP_001223800.1;Name=WP_001223800.1;Note=repressor of the Cpx envelope stress response pathway which occurs via periplasmic interactions with CpxA%3B CpxP is degraded by DegP protease especially in the presence of misfolded substrates;gbkey=CDS;gene=cpxP;product=periplasmic protein CpxP;protein_id=WP_001223800.1;transl_table=11 NC_008258.1 RefSeq gene 3660721 3661419 . + . ID=gene3929;Name=SFV_RS19740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19740;old_locus_tag=SFV_3581 NC_008258.1 Protein Homology CDS 3660721 3661419 . + 0 ID=cds3846;Parent=gene3929;Dbxref=Genbank:WP_001033722.1;Name=WP_001033722.1;Note=response regulator in two-component regulatory system with CpxA%3B part of the envelope stress response system;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001033722.1;transl_table=11 NC_008258.1 RefSeq gene 3661416 3662789 . + . ID=gene3930;Name=cpxA;gbkey=Gene;gene=cpxA;gene_biotype=protein_coding;locus_tag=SFV_RS19745;old_locus_tag=SFV_3582 NC_008258.1 Protein Homology CDS 3661416 3662789 . + 0 ID=cds3847;Parent=gene3930;Dbxref=Genbank:WP_000580417.1;Name=WP_000580417.1;Note=part of two-component CpxA/CpxR system%3B senses envelope stress%3B upregulates a number of periplasmic folding and trafficking factors;gbkey=CDS;gene=cpxA;product=two-component system sensor histidine kinase;protein_id=WP_000580417.1;transl_table=11 NC_008258.1 RefSeq gene 3662895 3663569 . - . ID=gene3931;Name=SFV_RS19750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19750;old_locus_tag=SFV_3583 NC_008258.1 Protein Homology CDS 3662895 3663569 . - 0 ID=cds3848;Parent=gene3931;Dbxref=Genbank:WP_001270270.1;Name=WP_001270270.1;gbkey=CDS;product=6-N-hydroxylaminopurine resistance protein;protein_id=WP_001270270.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3663702 3665037 . + . ID=id569;gbkey=repeat_region NC_008258.1 RefSeq region 3663705 3665035 . + . ID=id570;gbkey=mobile_element NC_008258.1 RefSeq gene 3663796 3664161 . + . ID=gene3932;Name=SFV_RS19755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19755;old_locus_tag=SFV_3584 NC_008258.1 Protein Homology CDS 3663796 3664161 . + 0 ID=cds3849;Parent=gene3932;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 3664119 3665024 . + . ID=gene3933;Name=SFV_RS19760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19760;old_locus_tag=SFV_3585 NC_008258.1 Protein Homology CDS 3664119 3665024 . + 0 ID=cds3850;Parent=gene3933;Dbxref=Genbank:WP_000376512.1;Name=WP_000376512.1;gbkey=CDS;product=integrase;protein_id=WP_000376512.1;transl_table=11 NC_008258.1 RefSeq gene 3665054 3666037 . - . ID=gene3934;Name=SFV_RS19765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19765;old_locus_tag=SFV_3586 NC_008258.1 Protein Homology CDS 3665054 3666037 . - 0 ID=cds3851;Parent=gene3934;Dbxref=Genbank:WP_001166063.1;Name=WP_001166063.1;Note=transports degraded pectin products into the bacterial cell;gbkey=CDS;product=2-keto-3-deoxygluconate permease;protein_id=WP_001166063.1;transl_table=11 NC_008258.1 RefSeq gene 3666140 3666255 . + . ID=gene3935;Name=SFV_RS19770;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19770;pseudo=true NC_008258.1 Protein Homology CDS 3666140 3666255 . + 0 ID=cds3852;Parent=gene3935;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3666296 3666916 . - . ID=gene3936;Name=SFV_RS19775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19775;old_locus_tag=SFV_3587 NC_008258.1 Protein Homology CDS 3666296 3666916 . - 0 ID=cds3853;Parent=gene3936;Dbxref=Genbank:WP_001297064.1;Name=WP_001297064.1;Note=SodA%3B manganese binding%3B only present under aerobic conditions%3B destroys free radicals;gbkey=CDS;product=superoxide dismutase [Mn];protein_id=WP_001297064.1;transl_table=11 NC_008258.1 RefSeq gene 3667201 3668235 . + . ID=gene3937;Name=SFV_RS19780;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19780;pseudo=true NC_008258.1 Protein Homology CDS 3667201 3668235 . + 0 ID=cds3854;Parent=gene3937;Note=transports L-rhamnose and L-lyxose into the cell;gbkey=CDS;product=rhamnose:proton symporter;pseudo=true;transl_except=(pos:3668032..3668034%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3668232 3669080 . - . ID=gene3938;Name=SFV_RS19785;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19785;pseudo=true NC_008258.1 Protein Homology CDS 3668232 3669080 . - 0 ID=cds3855;Parent=gene3938;Note=activates the expression of rhaRS in response to L-rhamnose;gbkey=CDS;product=transcriptional regulator;pseudo=true;transl_except=(pos:complement(3668400..3668402)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3669154 3669990 . - . ID=gene3939;Name=SFV_RS19790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19790;old_locus_tag=SFV_3590 NC_008258.1 Protein Homology CDS 3669154 3669990 . - 0 ID=cds3856;Parent=gene3939;Dbxref=Genbank:WP_000217105.1;Name=WP_000217105.1;gbkey=CDS;product=transcriptional activator RhaS;protein_id=WP_000217105.1;transl_table=11 NC_008258.1 RefSeq gene 3670050 3670199 . - . ID=gene3940;Name=SFV_RS19795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19795 NC_008258.1 Protein Homology CDS 3670050 3670199 . - 0 ID=cds3857;Parent=gene3940;Dbxref=Genbank:WP_000510376.1;Name=WP_000510376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000510376.1;transl_table=11 NC_008258.1 RefSeq gene 3670278 3671747 . + . ID=gene3941;Name=rhaB;gbkey=Gene;gene=rhaB;gene_biotype=protein_coding;locus_tag=SFV_RS19800;old_locus_tag=SFV_3591 NC_008258.1 Protein Homology CDS 3670278 3671747 . + 0 ID=cds3858;Parent=gene3941;Dbxref=Genbank:WP_000144088.1;Name=WP_000144088.1;Note=catalyzes the ATP-dependent phosphorylation of rhamnulose;gbkey=CDS;gene=rhaB;product=rhamnulokinase;protein_id=WP_000144088.1;transl_table=11 NC_008258.1 RefSeq gene 3671744 3673003 . + . ID=gene3942;Name=SFV_RS19805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19805;old_locus_tag=SFV_3592 NC_008258.1 Protein Homology CDS 3671744 3673003 . + 0 ID=cds3859;Parent=gene3942;Dbxref=Genbank:WP_000211507.1;Name=WP_000211507.1;Note=catalyzes the formation of L-rhamnulose from L-rhamnose;gbkey=CDS;product=L-rhamnose isomerase;protein_id=WP_000211507.1;transl_table=11 NC_008258.1 RefSeq gene 3673245 3674069 . + . ID=gene3943;Name=SFV_RS19810;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19810;pseudo=true NC_008258.1 Protein Homology CDS 3673245 3674069 . + 0 ID=cds3860;Parent=gene3943;gbkey=CDS;product=rhamnulose-1-phosphate aldolase;pseudo=true;transl_except=(pos:3673305..3673307%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3674079 3674393 . + . ID=gene3944;Name=SFV_RS19815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19815;old_locus_tag=SFV_3594 NC_008258.1 Protein Homology CDS 3674079 3674393 . + 0 ID=cds3861;Parent=gene3944;Dbxref=Genbank:WP_000619511.1;Name=WP_000619511.1;gbkey=CDS;product=L-rhamnose mutarotase;protein_id=WP_000619511.1;transl_table=11 NC_008258.1 RefSeq gene 3674694 3675140 . + . ID=gene3945;Name=SFV_RS19820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19820;old_locus_tag=SFV_3595 NC_008258.1 Protein Homology CDS 3674694 3675140 . + 0 ID=cds3862;Parent=gene3945;Dbxref=Genbank:WP_000729598.1;Name=WP_000729598.1;Note=with FrvBRX is part of the phosphoenolpyruvate-dependent sugar phosphotransferase system involved in the transport and phosphorylation of sugars%3B possibly responsible for the sugar specificity of the system;gbkey=CDS;product=PTS fructose transporter subunit EIIA;protein_id=WP_000729598.1;transl_table=11 NC_008258.1 RefSeq gene 3675151 3676602 . + . ID=gene3946;Name=SFV_RS19825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19825;old_locus_tag=SFV_3596 NC_008258.1 Protein Homology CDS 3675151 3676602 . + 0 ID=cds3863;Parent=gene3946;Dbxref=Genbank:WP_005086168.1;Name=WP_005086168.1;gbkey=CDS;product=PTS fructose transporter subunit IIBC;protein_id=WP_005086168.1;transl_table=11 NC_008258.1 RefSeq gene 3676592 3677662 . + . ID=gene3947;Name=SFV_RS19830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19830;old_locus_tag=SFV_3597 NC_008258.1 Protein Homology CDS 3676592 3677662 . + 0 ID=cds3864;Parent=gene3947;Dbxref=Genbank:WP_001019472.1;Name=WP_001019472.1;gbkey=CDS;product=peptidase;protein_id=WP_001019472.1;transl_table=11 NC_008258.1 RefSeq gene 3677662 3678312 . + . ID=gene3948;Name=SFV_RS19835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19835;old_locus_tag=SFV_3598 NC_008258.1 Protein Homology CDS 3677662 3678312 . + 0 ID=cds3865;Parent=gene3948;Dbxref=Genbank:WP_000931295.1;Name=WP_000931295.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000931295.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3678288 3679064 . + . ID=id571;gbkey=repeat_region NC_008258.1 RefSeq region 3678291 3679058 . + . ID=id572;gbkey=mobile_element NC_008258.1 RefSeq gene 3678540 3679043 . + . ID=gene3949;Name=SFV_RS19840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19840;old_locus_tag=SFV_3599 NC_008258.1 Protein Homology CDS 3678540 3679043 . + 0 ID=cds3866;Parent=gene3949;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 3679115 3679948 . - . ID=gene3950;Name=SFV_RS19845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19845;old_locus_tag=SFV_3600 NC_008258.1 Protein Homology CDS 3679115 3679948 . - 0 ID=cds3867;Parent=gene3950;Dbxref=Genbank:WP_000753620.1;Name=WP_000753620.1;Note=involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth;gbkey=CDS;product=protein FdhD;protein_id=WP_000753620.1;transl_table=11 NC_008258.1 RefSeq gene 3680142 3680729 . + . ID=gene3951;Name=SFV_RS19850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19850 NC_008258.1 Protein Homology CDS 3680142 3680729 . + 0 ID=cds3868;Parent=gene3951;Dbxref=Genbank:WP_001198358.1;Name=WP_001198358.1;gbkey=CDS;product=sulfate ABC transporter substrate-binding protein;protein_id=WP_001198358.1;transl_table=11 NC_008258.1 RefSeq gene 3680778 3683192 . + . ID=gene3952;Name=SFV_RS19855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19855 NC_008258.1 Protein Homology CDS 3680778 3683192 . + 0 ID=cds3869;Parent=gene3952;Dbxref=Genbank:WP_000181515.1;Name=WP_000181515.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_000181515.1;transl_table=11 NC_008258.1 RefSeq gene 3683205 3684107 . + . ID=gene3953;Name=SFV_RS19860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19860;old_locus_tag=SFV_3602 NC_008258.1 Protein Homology CDS 3683205 3684107 . + 0 ID=cds3870;Parent=gene3953;Dbxref=Genbank:WP_000331377.1;Name=WP_000331377.1;Note=beta subunit%3B involved in the use of formate as an electron donor during aerobic respiration%3B acts to transfer electrons from the major(alpha subunit) to the cytochrome b556(gamma subunit);gbkey=CDS;product=formate dehydrogenase-O iron-sulfur subunit;protein_id=WP_000331377.1;transl_table=11 NC_008258.1 RefSeq gene 3684104 3684739 . + . ID=gene3954;Name=SFV_RS19865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19865;old_locus_tag=SFV_3603 NC_008258.1 Protein Homology CDS 3684104 3684739 . + 0 ID=cds3871;Parent=gene3954;Dbxref=Genbank:WP_000829017.1;Name=WP_000829017.1;Note=cytochrome b556(FDO) component%3B heme containing;gbkey=CDS;product=formate dehydrogenase-N subunit gamma;protein_id=WP_000829017.1;transl_table=11 NC_008258.1 RefSeq gene 3684736 3685665 . + . ID=gene3955;Name=SFV_RS19870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19870;old_locus_tag=SFV_3604 NC_008258.1 Protein Homology CDS 3684736 3685665 . + 0 ID=cds3872;Parent=gene3955;Dbxref=Genbank:WP_000027722.1;Name=WP_000027722.1;Note=required for the formation of active formate dehydrogenase;gbkey=CDS;product=formate dehydrogenase accessory protein FdhE;protein_id=WP_000027722.1;transl_table=11 NC_008258.1 RefSeq gene 3685845 3685979 . + . ID=gene3956;Name=SFV_RS19875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19875 NC_008258.1 Protein Homology CDS 3685845 3685979 . + 0 ID=cds3873;Parent=gene3956;Dbxref=Genbank:WP_014334093.1;Name=WP_014334093.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_014334093.1;transl_table=11 NC_008258.1 RefSeq gene 3685995 3686237 . - . ID=gene3957;Name=SFV_RS19880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19880;old_locus_tag=SFV_3605 NC_008258.1 Protein Homology CDS 3685995 3686237 . - 0 ID=cds3874;Parent=gene3957;Dbxref=Genbank:WP_001086388.1;Name=WP_001086388.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001086388.1;transl_table=11 NC_008258.1 RefSeq gene 3686455 3686673 . - . ID=gene3958;Name=SFV_RS19885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19885 NC_008258.1 Protein Homology CDS 3686455 3686673 . - 0 ID=cds3875;Parent=gene3958;Dbxref=Genbank:WP_001295676.1;Name=WP_001295676.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295676.1;transl_table=11 NC_008258.1 RefSeq gene 3686958 3687077 . + . ID=gene3959;Name=SFV_RS19890;end_range=3687077,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19890;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3686958 3687077 . + 0 ID=cds3876;Parent=gene3959;end_range=3687077,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3687201 3687302 . - . ID=gene3960;Name=SFV_RS19895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19895 NC_008258.1 Protein Homology CDS 3687201 3687302 . - 0 ID=cds3877;Parent=gene3960;Dbxref=Genbank:WP_032155602.1;Name=WP_032155602.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155602.1;transl_table=11 NC_008258.1 RefSeq gene 3687352 3688254 . - . ID=gene3961;Name=SFV_RS19900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19900 NC_008258.1 Protein Homology CDS 3687352 3688254 . - 0 ID=cds3878;Parent=gene3961;Dbxref=Genbank:WP_024260314.1;Name=WP_024260314.1;gbkey=CDS;product=transposase;protein_id=WP_024260314.1;transl_table=11 NC_008258.1 RefSeq gene 3688279 3688996 . - . ID=gene3962;Name=SFV_RS19905;end_range=3688996,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS19905;partial=true;pseudo=true;start_range=.,3688279 NC_008258.1 Protein Homology CDS 3688279 3688996 . - 0 ID=cds3879;Parent=gene3962;end_range=3688996,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3688279;transl_table=11 NC_008258.1 RefSeq repeat_region 3688994 3689767 . + . ID=id573;gbkey=repeat_region NC_008258.1 RefSeq region 3688997 3689764 . + . ID=id574;gbkey=mobile_element NC_008258.1 RefSeq gene 3689103 3689327 . + . ID=gene3963;Name=SFV_RS19910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19910 NC_008258.1 Protein Homology CDS 3689103 3689327 . + 0 ID=cds3880;Parent=gene3963;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3689354 3689749 . + . ID=gene3964;Name=SFV_RS19915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19915 NC_008258.1 Protein Homology CDS 3689354 3689749 . + 0 ID=cds3881;Parent=gene3964;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 3690360 3691301 . - . ID=gene3965;Name=SFV_RS19920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19920;old_locus_tag=SFV_3611 NC_008258.1 Protein Homology CDS 3690360 3691301 . - 0 ID=cds3882;Parent=gene3965;Dbxref=Genbank:WP_005071557.1;Name=WP_005071557.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005071557.1;transl_table=11 NC_008258.1 RefSeq gene 3691346 3691783 . - . ID=gene3966;Name=SFV_RS19925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19925;old_locus_tag=SFV_3612 NC_008258.1 Protein Homology CDS 3691346 3691783 . - 0 ID=cds3883;Parent=gene3966;Dbxref=Genbank:WP_000560982.1;Name=WP_000560982.1;Note=hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr)%3B possible defense mechanism against a harmful effect of D-tyrosine;gbkey=CDS;product=D-aminoacyl-tRNA deacylase;protein_id=WP_000560982.1;transl_table=11 NC_008258.1 RefSeq gene 3691780 3692652 . - . ID=gene3967;Name=SFV_RS19930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19930;old_locus_tag=SFV_3613 NC_008258.1 Protein Homology CDS 3691780 3692652 . - 0 ID=cds3884;Parent=gene3967;Dbxref=Genbank:WP_000920762.1;Name=WP_000920762.1;gbkey=CDS;product=membrane protein;protein_id=WP_000920762.1;transl_table=11 NC_008258.1 RefSeq gene 3692646 3693245 . - . ID=gene3968;Name=SFV_RS19935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19935;old_locus_tag=SFV_3614 NC_008258.1 Protein Homology CDS 3692646 3693245 . - 0 ID=cds3885;Parent=gene3968;Dbxref=Genbank:WP_011587275.1;Name=WP_011587275.1;gbkey=CDS;product=alpha-D-glucose-1-phosphatase;protein_id=WP_011587275.1;transl_table=11 NC_008258.1 RefSeq gene 3693344 3694129 . - . ID=gene3969;Name=SFV_RS19940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19940;old_locus_tag=SFV_3615 NC_008258.1 Protein Homology CDS 3693344 3694129 . - 0 ID=cds3886;Parent=gene3969;Dbxref=Genbank:WP_000059682.1;Name=WP_000059682.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000059682.1;transl_table=11 NC_008258.1 RefSeq gene 3694163 3695059 . - . ID=gene3970;Name=SFV_RS19945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19945;old_locus_tag=SFV_3616 NC_008258.1 Protein Homology CDS 3694163 3695059 . - 0 ID=cds3887;Parent=gene3970;Dbxref=Genbank:WP_000621635.1;Name=WP_000621635.1;gbkey=CDS;product=sugar kinase;protein_id=WP_000621635.1;transl_table=11 NC_008258.1 RefSeq gene 3695227 3696123 . + . ID=gene3971;Name=SFV_RS19950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19950;old_locus_tag=SFV_3617 NC_008258.1 Protein Homology CDS 3695227 3696123 . + 0 ID=cds3888;Parent=gene3971;Dbxref=Genbank:WP_000718893.1;Name=WP_000718893.1;Note=catalyzes the formation of gamma hydroxybutyrate from succinate semialdehyde;gbkey=CDS;product=3-sulfolactaldehyde reductase;protein_id=WP_000718893.1;transl_table=11 NC_008258.1 RefSeq gene 3696147 3697025 . + . ID=gene3972;Name=SFV_RS19955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19955;old_locus_tag=SFV_3618 NC_008258.1 Protein Homology CDS 3696147 3697025 . + 0 ID=cds3889;Parent=gene3972;Dbxref=Genbank:WP_001046469.1;Name=WP_001046469.1;gbkey=CDS;product=aldolase;protein_id=WP_001046469.1;transl_table=11 NC_008258.1 RefSeq gene 3697042 3698283 . + . ID=gene3973;Name=SFV_RS19960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19960;old_locus_tag=SFV_3619 NC_008258.1 Protein Homology CDS 3697042 3698283 . + 0 ID=cds3890;Parent=gene3973;Dbxref=Genbank:WP_000870898.1;Name=WP_000870898.1;gbkey=CDS;product=sugar isomerase;protein_id=WP_000870898.1;transl_table=11 NC_008258.1 RefSeq gene 3698421 3699323 . + . ID=gene3974;Name=SFV_RS19965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19965;old_locus_tag=SFV_3620 NC_008258.1 Protein Homology CDS 3698421 3699323 . + 0 ID=cds3891;Parent=gene3974;Dbxref=Genbank:WP_005052848.1;Name=WP_005052848.1;gbkey=CDS;product=aldose-1-epimerase;protein_id=WP_005052848.1;transl_table=11 NC_008258.1 RefSeq gene 3699522 3701558 . + . ID=gene3975;Name=SFV_RS19970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19970;old_locus_tag=SFV_3621 NC_008258.1 Protein Homology CDS 3699522 3701558 . + 0 ID=cds3892;Parent=gene3975;Dbxref=Genbank:WP_000380824.1;Name=WP_000380824.1;gbkey=CDS;product=alpha-glucosidase;protein_id=WP_000380824.1;transl_table=11 NC_008258.1 RefSeq gene 3701604 3702989 . + . ID=gene3976;Name=SFV_RS19975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19975;old_locus_tag=SFV_3622 NC_008258.1 Protein Homology CDS 3701604 3702989 . + 0 ID=cds3893;Parent=gene3976;Dbxref=Genbank:WP_000018376.1;Name=WP_000018376.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000018376.1;transl_table=11 NC_008258.1 RefSeq gene 3703032 3704489 . + . ID=gene3977;Name=SFV_RS19980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19980;old_locus_tag=SFV_3623 NC_008258.1 Protein Homology CDS 3703032 3704489 . + 0 ID=cds3894;Parent=gene3977;Dbxref=Genbank:WP_001279680.1;Name=WP_001279680.1;gbkey=CDS;product=membrane protein;protein_id=WP_001279680.1;transl_table=11 NC_008258.1 RefSeq gene 3704468 3704854 . + . ID=gene3978;Name=SFV_RS19985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19985;old_locus_tag=SFV_3624 NC_008258.1 Protein Homology CDS 3704468 3704854 . + 0 ID=cds3895;Parent=gene3978;Dbxref=Genbank:WP_011069582.1;Name=WP_011069582.1;gbkey=CDS;product=porin;protein_id=WP_011069582.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3704834 3705607 . + . ID=id575;gbkey=repeat_region NC_008258.1 RefSeq region 3704834 3705600 . - . ID=id576;gbkey=mobile_element NC_008258.1 RefSeq gene 3704848 3705243 . - . ID=gene3979;Name=SFV_RS19990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19990 NC_008258.1 Protein Homology CDS 3704848 3705243 . - 0 ID=cds3896;Parent=gene3979;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 3705270 3705494 . - . ID=gene3980;Name=SFV_RS19995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS19995 NC_008258.1 Protein Homology CDS 3705270 3705494 . - 0 ID=cds3897;Parent=gene3980;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3705601 3706632 . - . ID=gene3981;Name=SFV_RS20000;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20000;old_locus_tag=SFV_3626;partial=true;pseudo=true;start_range=.,3705601 NC_008258.1 Protein Homology CDS 3705601 3706632 . - 0 ID=cds3898;Parent=gene3981;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3705601;transl_table=11 NC_008258.1 RefSeq gene 3706734 3707714 . - . ID=gene3982;Name=SFV_RS20005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20005;old_locus_tag=SFV_3627 NC_008258.1 Protein Homology CDS 3706734 3707714 . - 0 ID=cds3899;Parent=gene3982;Dbxref=Genbank:WP_000256406.1;Name=WP_000256406.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000256406.1;transl_table=11 NC_008258.1 RefSeq gene 3707722 3708432 . - . ID=gene3983;Name=SFV_RS20010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20010;old_locus_tag=SFV_3628 NC_008258.1 Protein Homology CDS 3707722 3708432 . - 0 ID=cds3900;Parent=gene3983;Dbxref=Genbank:WP_000829798.1;Name=WP_000829798.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000829798.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3708620 3710051 . + . ID=id577;gbkey=repeat_region NC_008258.1 RefSeq region 3708623 3710048 . + . ID=id578;gbkey=mobile_element NC_008258.1 RefSeq gene 3708707 3710035 . + . ID=gene3984;Name=SFV_RS20015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20015;old_locus_tag=SFV_3629 NC_008258.1 Protein Homology CDS 3708707 3710035 . + 0 ID=cds3901;Parent=gene3984;Dbxref=Genbank:WP_000547274.1;Name=WP_000547274.1;gbkey=CDS;product=transposase;protein_id=WP_000547274.1;transl_table=11 NC_008258.1 RefSeq gene 3710087 3711910 . - . ID=gene3985;Name=SFV_RS20020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20020;old_locus_tag=SFV_3630 NC_008258.1 Protein Homology CDS 3710087 3711910 . - 0 ID=cds3902;Parent=gene3985;Dbxref=Genbank:WP_000570661.1;Name=WP_000570661.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_000570661.1;transl_table=11 NC_008258.1 RefSeq gene 3712071 3712304 . + . ID=gene3986;Name=SFV_RS20025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20025 NC_008258.1 Protein Homology CDS 3712071 3712304 . + 0 ID=cds3903;Parent=gene3986;Dbxref=Genbank:WP_032142137.1;Name=WP_032142137.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032142137.1;transl_table=11 NC_008258.1 RefSeq gene 3712283 3713692 . + . ID=gene3987;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=SFV_RS20030;old_locus_tag=SFV_3631 NC_008258.1 Protein Homology CDS 3712283 3713692 . + 0 ID=cds3904;Parent=gene3987;Dbxref=Genbank:WP_001271717.1;Name=WP_001271717.1;Note=forms a homododecamer%3B forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate%3B also functions in the assimilation of ammonia%3B highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues%3B addition of adenylyl groups results in inactivation of the enzyme;gbkey=CDS;gene=glnA;product=glutamine synthetase;protein_id=WP_001271717.1;transl_table=11 NC_008258.1 RefSeq gene 3713865 3714914 . + . ID=gene3988;Name=glnL;gbkey=Gene;gene=glnL;gene_biotype=protein_coding;locus_tag=SFV_RS20035;old_locus_tag=SFV_3632 NC_008258.1 Protein Homology CDS 3713865 3714914 . + 0 ID=cds3905;Parent=gene3988;Dbxref=Genbank:WP_000190577.1;Name=WP_000190577.1;Note=sensory histidine kinase in two-component regulatory system with GlnG%3B acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation;gbkey=CDS;gene=glnL;product=PAS domain-containing two-component system sensor histidine kinase;protein_id=WP_000190577.1;transl_table=11 NC_008258.1 RefSeq gene 3714926 3716335 . + . ID=gene3989;Name=glnG;gbkey=Gene;gene=glnG;gene_biotype=protein_coding;locus_tag=SFV_RS20040;old_locus_tag=SFV_3633 NC_008258.1 Protein Homology CDS 3714926 3716335 . + 0 ID=cds3906;Parent=gene3989;Dbxref=Genbank:WP_005052855.1;Name=WP_005052855.1;Note=response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes%3B interacts with sigma-54;gbkey=CDS;gene=glnG;product=nitrogen regulation protein NR(I);protein_id=WP_005052855.1;transl_table=11 NC_008258.1 RefSeq gene 3716446 3716556 . + . ID=gene3990;Name=SFV_RS20045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20045 NC_008258.1 Protein Homology CDS 3716446 3716556 . + 0 ID=cds3907;Parent=gene3990;Dbxref=Genbank:WP_000893994.1;Name=WP_000893994.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000893994.1;transl_table=11 NC_008258.1 RefSeq gene 3716785 3718158 . - . ID=gene3991;Name=SFV_RS20050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20050;old_locus_tag=SFV_3634 NC_008258.1 Protein Homology CDS 3716785 3718158 . - 0 ID=cds3908;Parent=gene3991;Dbxref=Genbank:WP_000116080.1;Name=WP_000116080.1;Note=catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III;gbkey=CDS;product=coproporphyrinogen III oxidase;protein_id=WP_000116080.1;transl_table=11 NC_008258.1 RefSeq gene 3718347 3718856 . - . ID=gene3992;Name=SFV_RS20055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20055;old_locus_tag=SFV_3635 NC_008258.1 Protein Homology CDS 3718347 3718856 . - 0 ID=cds3909;Parent=gene3992;Dbxref=Genbank:WP_001295266.1;Name=WP_001295266.1;gbkey=CDS;product=der GTPase-activating protein YihI;protein_id=WP_001295266.1;transl_table=11 NC_008258.1 RefSeq gene 3719438 3720070 . + . ID=gene3993;Name=SFV_RS20060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20060;old_locus_tag=SFV_3636 NC_008258.1 Protein Homology CDS 3719438 3720070 . + 0 ID=cds3910;Parent=gene3993;Dbxref=Genbank:WP_000183342.1;Name=WP_000183342.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_000183342.1;transl_table=11 NC_008258.1 RefSeq gene 3720452 3723238 . - . ID=gene3994;Name=SFV_RS20065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20065;old_locus_tag=SFV_3637 NC_008258.1 Protein Homology CDS 3720452 3723238 . - 0 ID=cds3911;Parent=gene3994;Dbxref=Genbank:WP_000250049.1;Name=WP_000250049.1;gbkey=CDS;product=DNA polymerase I;protein_id=WP_000250049.1;transl_table=11 NC_008258.1 RefSeq gene 3723240 3723482 . + . ID=gene3995;Name=SFV_RS20070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20070 NC_008258.1 Protein Homology CDS 3723240 3723482 . + 0 ID=cds3912;Parent=gene3995;Dbxref=Genbank:WP_000115988.1;Name=WP_000115988.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000115988.1;transl_table=11 NC_008258.1 RefSeq gene 3723602 3724534 . + . ID=gene3996;Name=SFV_RS20075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20075;old_locus_tag=SFV_3638 NC_008258.1 Protein Homology CDS 3723602 3724534 . + 0 ID=cds3913;Parent=gene3996;Dbxref=Genbank:WP_005106026.1;Name=WP_005106026.1;gbkey=CDS;product=acyltransferase;protein_id=WP_005106026.1;transl_table=11 NC_008258.1 RefSeq gene 3724575 3725354 . - . ID=gene3997;Name=SFV_RS20080;end_range=3725354,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20080;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3724575 3725354 . - 0 ID=cds3914;Parent=gene3997;end_range=3725354,.;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(3725349..3725351)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 3725314 3726091 . + . ID=id579;gbkey=repeat_region NC_008258.1 RefSeq region 3725320 3726087 . - . ID=id580;gbkey=mobile_element NC_008258.1 RefSeq gene 3725335 3725628 . - . ID=gene3998;Name=SFV_RS20085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20085 NC_008258.1 Protein Homology CDS 3725335 3725628 . - 0 ID=cds3915;Parent=gene3998;Dbxref=Genbank:WP_000951585.1;Name=WP_000951585.1;gbkey=CDS;product=transposase;protein_id=WP_000951585.1;transl_table=11 NC_008258.1 RefSeq gene 3725757 3725981 . - . ID=gene3999;Name=SFV_RS20090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20090 NC_008258.1 Protein Homology CDS 3725757 3725981 . - 0 ID=cds3916;Parent=gene3999;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3726089 3726781 . - . ID=gene4000;Name=SFV_RS20095;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20095;partial=true;pseudo=true;start_range=.,3726089 NC_008258.1 Protein Homology CDS 3726089 3726781 . - 0 ID=cds3917;Parent=gene4000;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3726089;transl_table=11 NC_008258.1 RefSeq gene 3726936 3727562 . - . ID=gene4001;Name=SFV_RS20100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20100;old_locus_tag=SFV_3641 NC_008258.1 Protein Homology CDS 3726936 3727562 . - 0 ID=cds3918;Parent=gene4001;Dbxref=Genbank:WP_000725337.1;Name=WP_000725337.1;gbkey=CDS;product=thiol:disulfide interchange protein DsbA;protein_id=WP_000725337.1;transl_table=11 NC_008258.1 RefSeq gene 3727579 3728565 . - . ID=gene4002;Name=SFV_RS20105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20105;old_locus_tag=SFV_3642 NC_008258.1 Protein Homology CDS 3727579 3728565 . - 0 ID=cds3919;Parent=gene4002;Dbxref=Genbank:WP_001065539.1;Name=WP_001065539.1;Note=catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro%3B specific substrate in vivo has not been identified yet%3B plays a role in long-term cell survival and expression of surface appendages;gbkey=CDS;product=protein RdoA;protein_id=WP_001065539.1;transl_table=11 NC_008258.1 RefSeq gene 3728642 3728911 . - . ID=gene4003;Name=SFV_RS20110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20110;old_locus_tag=SFV_3643 NC_008258.1 Protein Homology CDS 3728642 3728911 . - 0 ID=cds3920;Parent=gene4003;Dbxref=Genbank:WP_005052859.1;Name=WP_005052859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052859.1;transl_table=11 NC_008258.1 RefSeq gene 3728981 3729565 . + . ID=gene4004;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=SFV_RS20115;old_locus_tag=SFV_3644 NC_008258.1 Protein Homology CDS 3728981 3729565 . + 0 ID=cds3921;Parent=gene4004;Dbxref=Genbank:WP_001052156.1;Name=WP_001052156.1;Note=in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis;gbkey=CDS;gene=mobA;product=molybdopterin-guanine dinucleotide biosynthesis protein MobA;protein_id=WP_001052156.1;transl_table=11 NC_008258.1 RefSeq gene 3729547 3730074 . + . ID=gene4005;Name=SFV_RS20120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20120;old_locus_tag=SFV_3645 NC_008258.1 Protein Homology CDS 3729547 3730074 . + 0 ID=cds3922;Parent=gene4005;Dbxref=Genbank:WP_000907614.1;Name=WP_000907614.1;Note=in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway;gbkey=CDS;product=molybdopterin-guanine dinucleotide biosynthesis protein B;protein_id=WP_000907614.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3730100 3735552 . + . ID=id581;gbkey=repeat_region NC_008258.1 RefSeq gene 3730176 3730291 . - . ID=gene4006;Name=SFV_RS20125;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS20125;old_locus_tag=SFV_3646 NC_008258.1 cmsearch rRNA 3730176 3730291 . - . ID=rna83;Parent=gene4006;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 3730176 3730291 . - . ID=id582;Parent=rna83;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 3730375 3733299 . - . ID=gene4007;Name=SFV_RS20130;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS20130;old_locus_tag=SFV_3647 NC_008258.1 RefSeq rRNA 3730375 3733299 . - . ID=rna84;Parent=gene4007;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 3730375 3733299 . - . ID=id583;Parent=rna84;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 3733484 3733559 . - . ID=gene4008;Name=SFV_RS20135;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20135;old_locus_tag=SFV_3648 NC_008258.1 tRNAscan-SE tRNA 3733484 3733559 . - . ID=rna85;Parent=gene4008;anticodon=(pos:complement(3733523..3733525));gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 3733484 3733559 . - . ID=id584;Parent=rna85;anticodon=(pos:complement(3733523..3733525));gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 3733633 3735188 . - . ID=gene4009;Name=SFV_RS20140;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS20140;old_locus_tag=SFV_3649 NC_008258.1 RefSeq rRNA 3733633 3735188 . - . ID=rna86;Parent=gene4009;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 3733633 3735188 . - . ID=id585;Parent=rna86;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq gene 3735564 3736109 . - . ID=gene4010;Name=hemG;gbkey=Gene;gene=hemG;gene_biotype=protein_coding;locus_tag=SFV_RS20145;old_locus_tag=SFV_3650 NC_008258.1 Protein Homology CDS 3735564 3736109 . - 0 ID=cds3923;Parent=gene4010;Dbxref=Genbank:WP_000853972.1;Name=WP_000853972.1;Note=catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX;gbkey=CDS;gene=hemG;product=protoporphyrinogen oxidase;protein_id=WP_000853972.1;transl_table=11 NC_008258.1 RefSeq gene 3736121 3737572 . - . ID=gene4011;Name=SFV_RS20150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20150;old_locus_tag=SFV_3651 NC_008258.1 Protein Homology CDS 3736121 3737572 . - 0 ID=cds3924;Parent=gene4011;Dbxref=Genbank:WP_000545676.1;Name=WP_000545676.1;gbkey=CDS;product=potassium transporter;protein_id=WP_000545676.1;transl_table=11 NC_008258.1 RefSeq gene 3737611 3738225 . - . ID=gene4012;Name=SFV_RS20155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20155;old_locus_tag=SFV_3652 NC_008258.1 Protein Homology CDS 3737611 3738225 . - 0 ID=cds3925;Parent=gene4012;Dbxref=Genbank:WP_001482972.1;Name=WP_001482972.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001482972.1;transl_table=11 NC_008258.1 RefSeq gene 3738225 3739556 . - . ID=gene4013;Name=SFV_RS20160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20160;old_locus_tag=SFV_3653 NC_008258.1 Protein Homology CDS 3738225 3739556 . - 0 ID=cds3926;Parent=gene4013;Dbxref=Genbank:WP_000444553.1;Name=WP_000444553.1;Note=catalyzes the hydrolysis of dipeptides with a proline at the C-terminal%3B also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters;gbkey=CDS;product=Xaa-Pro dipeptidase;protein_id=WP_000444553.1;transl_table=11 NC_008258.1 RefSeq gene 3739746 3741935 . + . ID=gene4014;Name=fadB;gbkey=Gene;gene=fadB;gene_biotype=protein_coding;locus_tag=SFV_RS20165;old_locus_tag=SFV_3654 NC_008258.1 Protein Homology CDS 3739746 3741935 . + 0 ID=cds3927;Parent=gene4014;Dbxref=Genbank:WP_000965917.1;Name=WP_000965917.1;Note=includes enoyl-CoA hydratase%2C delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase%2C 3-hydroxyacyl-CoA dehydrogenase%2C and 3-hydroxybutyryl-CoA epimerase%3B catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA%3B also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities%3B forms a heterotetramer with FadA%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids;gbkey=CDS;gene=fadB;product=fatty acid oxidation complex subunit alpha;protein_id=WP_000965917.1;transl_table=11 NC_008258.1 RefSeq gene 3741945 3743108 . + . ID=gene4015;Name=fadA;gbkey=Gene;gene=fadA;gene_biotype=protein_coding;locus_tag=SFV_RS20170;old_locus_tag=SFV_3655 NC_008258.1 Protein Homology CDS 3741945 3743108 . + 0 ID=cds3928;Parent=gene4015;Dbxref=Genbank:WP_000438720.1;Name=WP_000438720.1;Note=FadA%3B fatty acid oxidation complex component beta%3B functions in a heterotetramer with FadB%3B similar to FadI2J2 complex%3B functions in beta-oxidation of fatty acids;gbkey=CDS;gene=fadA;product=3-ketoacyl-CoA thiolase;protein_id=WP_000438720.1;transl_table=11 NC_008258.1 RefSeq gene 3743300 3744001 . - . ID=gene4016;Name=fre;gbkey=Gene;gene=fre;gene_biotype=protein_coding;gene_synonym=fadI;locus_tag=SFV_RS20175;old_locus_tag=SFV_3656 NC_008258.1 Protein Homology CDS 3743300 3744001 . - 0 ID=cds3929;Parent=gene4016;Dbxref=Genbank:WP_024260316.1;Name=WP_024260316.1;Note=NAD(P)H-flavin reductase%3B catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide%3B in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin;gbkey=CDS;gene=fre;product=FMN reductase;protein_id=WP_024260316.1;transl_table=11 NC_008258.1 RefSeq gene 3744047 3745540 . - . ID=gene4017;Name=SFV_RS20180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20180;old_locus_tag=SFV_3657 NC_008258.1 Protein Homology CDS 3744047 3745540 . - 0 ID=cds3930;Parent=gene4017;Dbxref=Genbank:WP_000339794.1;Name=WP_000339794.1;Note=catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol;gbkey=CDS;product=3-polyprenyl-4-hydroxybenzoate decarboxylase;protein_id=WP_000339794.1;transl_table=11 NC_008258.1 RefSeq gene 3745707 3746195 . + . ID=gene4018;Name=rfaH;gbkey=Gene;gene=rfaH;gene_biotype=protein_coding;locus_tag=SFV_RS20185;old_locus_tag=SFV_3658 NC_008258.1 Protein Homology CDS 3745707 3746195 . + 0 ID=cds3931;Parent=gene4018;Dbxref=Genbank:WP_001192403.1;Name=WP_001192403.1;gbkey=CDS;gene=rfaH;product=transcriptional regulator;protein_id=WP_001192403.1;transl_table=11 NC_008258.1 RefSeq gene 3746192 3746974 . - . ID=gene4019;Name=SFV_RS20190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20190;old_locus_tag=SFV_3659 NC_008258.1 Protein Homology CDS 3746192 3746974 . - 0 ID=cds3932;Parent=gene4019;Dbxref=Genbank:WP_001299486.1;Name=WP_001299486.1;Note=magnesium dependent%3B involved in quality control of mutated Tat exported substrates%3B not involved in the Sec-independent protein export system;gbkey=CDS;product=Tat-linked quality control protein TatD;protein_id=WP_001299486.1;transl_table=11 NC_008258.1 RefSeq gene 3747016 3747792 . - . ID=gene4020;Name=SFV_RS20195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20195;old_locus_tag=SFV_3660 NC_008258.1 Protein Homology CDS 3747016 3747792 . - 0 ID=cds3933;Parent=gene4020;Dbxref=Genbank:WP_000109941.1;Name=WP_000109941.1;Note=with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane;gbkey=CDS;product=preprotein translocase subunit TatC;protein_id=WP_000109941.1;transl_table=11 NC_008258.1 RefSeq gene 3747795 3748310 . - . ID=gene4021;Name=SFV_RS20200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20200;old_locus_tag=SFV_3661 NC_008258.1 Protein Homology CDS 3747795 3748310 . - 0 ID=cds3934;Parent=gene4021;Dbxref=Genbank:WP_000459594.1;Name=WP_000459594.1;Note=mediates the export of protein precursors bearing twin-arginine signal peptides;gbkey=CDS;product=Sec-independent protein translocase TatB;protein_id=WP_000459594.1;transl_table=11 NC_008258.1 RefSeq gene 3748314 3748583 . - . ID=gene4022;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=SFV_RS20205;old_locus_tag=SFV_3662 NC_008258.1 Protein Homology CDS 3748314 3748583 . - 0 ID=cds3935;Parent=gene4022;Dbxref=Genbank:WP_001295260.1;Name=WP_001295260.1;Note=TatA%3B similar to TatE that is found in some proteobacteria%3B part of system that translocates proteins with a conserved twin arginine motif across the inner membrane%3B capable of translocating folded substrates typically those with bound cofactors%3B similar to a protein import system in thylakoid membranes;gbkey=CDS;gene=tatA;product=protein translocase TatA;protein_id=WP_001295260.1;transl_table=11 NC_008258.1 RefSeq gene 3748662 3750302 . - . ID=gene4023;Name=ubiB;gbkey=Gene;gene=ubiB;gene_biotype=protein_coding;gene_synonym=aarF,yigQ,yigR;locus_tag=SFV_RS20210;old_locus_tag=SFV_3663 NC_008258.1 Protein Homology CDS 3748662 3750302 . - 0 ID=cds3936;Parent=gene4023;Dbxref=Genbank:WP_000187530.1;Name=WP_000187530.1;Note=an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone%3B functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis%3B similar to eukaryotic proteins that exhibit kinase functions;gbkey=CDS;gene=ubiB;product=hypothetical protein;protein_id=WP_000187530.1;transl_table=11 NC_008258.1 RefSeq gene 3750299 3750904 . - . ID=gene4024;Name=SFV_RS20215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20215;old_locus_tag=SFV_3664 NC_008258.1 Protein Homology CDS 3750299 3750904 . - 0 ID=cds3937;Parent=gene4024;Dbxref=Genbank:WP_005106028.1;Name=WP_005106028.1;gbkey=CDS;product=membrane protein;protein_id=WP_005106028.1;transl_table=11 NC_008258.1 RefSeq gene 3750918 3751673 . - . ID=gene4025;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=SFV_RS20220;old_locus_tag=SFV_3665 NC_008258.1 Protein Homology CDS 3750918 3751673 . - 0 ID=cds3938;Parent=gene4025;Dbxref=Genbank:WP_000227958.1;Name=WP_000227958.1;Note=Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone and menaquinone;gbkey=CDS;gene=ubiE;product=ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE;protein_id=WP_000227958.1;transl_table=11 NC_008258.1 RefSeq gene 3751768 3753195 . - . ID=gene4026;Name=SFV_RS20225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20225;old_locus_tag=SFV_3666 NC_008258.1 Protein Homology CDS 3751768 3753195 . - 0 ID=cds3939;Parent=gene4026;Dbxref=Genbank:WP_000347714.1;Name=WP_000347714.1;Note=YigN%3B nuclease that may cleave DNA structures arising during the recombination of short-inverted repeats and thereby prevents the inversion of the internal sequence%3B transcription is induced by DNA-damaging agents such as nalidixic acid or mitomycin C in a LexA-dependent manner;gbkey=CDS;product=DNA recombination protein RmuC;protein_id=WP_000347714.1;transl_table=11 NC_008258.1 RefSeq gene 3753336 3754097 . - . ID=gene4027;Name=SFV_RS20230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20230;old_locus_tag=SFV_3667 NC_008258.1 Protein Homology CDS 3753336 3754097 . - 0 ID=cds3940;Parent=gene4027;Dbxref=Genbank:WP_000045183.1;Name=WP_000045183.1;Note=catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate%3B involved in the pyrimidine salvage pathway;gbkey=CDS;product=uridine phosphorylase;protein_id=WP_000045183.1;transl_table=11 NC_008258.1 RefSeq gene 3754359 3755174 . + . ID=gene4028;Name=SFV_RS20235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20235;old_locus_tag=SFV_3668 NC_008258.1 Protein Homology CDS 3754359 3755174 . + 0 ID=cds3941;Parent=gene4028;Dbxref=Genbank:WP_001296987.1;Name=WP_001296987.1;gbkey=CDS;product=carboxymethylenebutenolidase;protein_id=WP_001296987.1;transl_table=11 NC_008258.1 RefSeq gene 3755213 3757474 . - . ID=gene4029;Name=SFV_RS20240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20240;old_locus_tag=SFV_3669 NC_008258.1 Protein Homology CDS 3755213 3757474 . - 0 ID=cds3942;Parent=gene4029;Dbxref=Genbank:WP_000153986.1;Name=WP_000153986.1;gbkey=CDS;product=5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase;protein_id=WP_000153986.1;transl_table=11 NC_008258.1 RefSeq gene 3757710 3758663 . + . ID=gene4030;Name=SFV_RS20245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20245;old_locus_tag=SFV_3670 NC_008258.1 Protein Homology CDS 3757710 3758663 . + 0 ID=cds3943;Parent=gene4030;Dbxref=Genbank:WP_000573621.1;Name=WP_000573621.1;Note=homocysteine-binding%3B positive regulator of metA%2C metE and metH;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000573621.1;transl_table=11 NC_008258.1 RefSeq gene 3758551 3759450 . - . ID=gene4031;Name=SFV_RS20250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20250;old_locus_tag=SFV_3671 NC_008258.1 Protein Homology CDS 3758551 3759450 . - 0 ID=cds3944;Parent=gene4031;Dbxref=Genbank:WP_005071626.1;Name=WP_005071626.1;gbkey=CDS;product=membrane protein;protein_id=WP_005071626.1;transl_table=11 NC_008258.1 RefSeq gene 3759526 3760326 . - . ID=gene4032;Name=SFV_RS20255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20255;old_locus_tag=SFV_3672 NC_008258.1 Protein Homology CDS 3759526 3760326 . - 0 ID=cds3945;Parent=gene4032;Dbxref=Genbank:WP_000285352.1;Name=WP_000285352.1;gbkey=CDS;product=pyridoxal phosphate phosphatase YigL;protein_id=WP_000285352.1;transl_table=11 NC_008258.1 RefSeq gene 3760334 3761356 . - . ID=gene4033;Name=SFV_RS20260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20260;old_locus_tag=SFV_3673 NC_008258.1 Protein Homology CDS 3760334 3761356 . - 0 ID=cds3946;Parent=gene4033;Dbxref=Genbank:WP_000487641.1;Name=WP_000487641.1;Note=lecithinase B%3B catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine%3B can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates;gbkey=CDS;product=lysophospholipase L2;protein_id=WP_000487641.1;transl_table=11 NC_008258.1 RefSeq gene 3761467 3762087 . + . ID=gene4034;Name=rhtB;gbkey=Gene;gene=rhtB;gene_biotype=protein_coding;locus_tag=SFV_RS20265;old_locus_tag=SFV_3674 NC_008258.1 Protein Homology CDS 3761467 3762087 . + 0 ID=cds3947;Parent=gene4034;Dbxref=Genbank:WP_000171704.1;Name=WP_000171704.1;gbkey=CDS;gene=rhtB;product=threonine transporter RhtB;protein_id=WP_000171704.1;transl_table=11 NC_008258.1 RefSeq gene 3762149 3762769 . - . ID=gene4035;Name=SFV_RS20270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20270;old_locus_tag=SFV_3675 NC_008258.1 Protein Homology CDS 3762149 3762769 . - 0 ID=cds3948;Parent=gene4035;Dbxref=Genbank:WP_000928829.1;Name=WP_000928829.1;gbkey=CDS;product=threonine transporter RhtB;protein_id=WP_000928829.1;transl_table=11 NC_008258.1 RefSeq gene 3762833 3764662 . - . ID=gene4036;Name=SFV_RS20275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20275;old_locus_tag=SFV_3676 NC_008258.1 Protein Homology CDS 3762833 3764662 . - 0 ID=cds3949;Parent=gene4036;Dbxref=Genbank:WP_005052866.1;Name=WP_005052866.1;Note=functions in blocking illegitimate recombination%2C enhancing topoisomerase activity%2C initiating SOS signaling and clearing blocked replication forks%3B component of the RecF recombinational pathway;gbkey=CDS;product=ATP-dependent DNA helicase RecQ;protein_id=WP_005052866.1;transl_table=11 NC_008258.1 RefSeq gene 3764795 3765664 . - . ID=gene4037;Name=SFV_RS20280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20280;old_locus_tag=SFV_3677 NC_008258.1 Protein Homology CDS 3764795 3765664 . - 0 ID=cds3950;Parent=gene4037;Dbxref=Genbank:WP_001259700.1;Name=WP_001259700.1;Note=catalyzes the hydrolysis of phosphatidylcholine;gbkey=CDS;product=phospholipase A1;protein_id=WP_001259700.1;transl_table=11 NC_008258.1 RefSeq gene 3765829 3766296 . + . ID=gene4038;Name=SFV_RS20285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20285;old_locus_tag=SFV_3678 NC_008258.1 Protein Homology CDS 3765829 3766296 . + 0 ID=cds3951;Parent=gene4038;Dbxref=Genbank:WP_001277142.1;Name=WP_001277142.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001277142.1;transl_table=11 NC_008258.1 RefSeq gene 3766348 3767238 . + . ID=gene4039;Name=SFV_RS20290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20290;old_locus_tag=SFV_3679 NC_008258.1 Protein Homology CDS 3766348 3767238 . + 0 ID=cds3952;Parent=gene4039;Dbxref=Genbank:WP_000339107.1;Name=WP_000339107.1;gbkey=CDS;product=protein RarD;protein_id=WP_000339107.1;transl_table=11 NC_008258.1 RefSeq gene 3767333 3767707 . + . ID=gene4040;Name=SFV_RS20295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20295;old_locus_tag=SFV_3680 NC_008258.1 Protein Homology CDS 3767333 3767707 . + 0 ID=cds3953;Parent=gene4040;Dbxref=Genbank:WP_024260317.1;Name=WP_024260317.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260317.1;transl_table=11 NC_008258.1 RefSeq gene 3767721 3768101 . + . ID=gene4041;Name=SFV_RS20300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20300;old_locus_tag=SFV_3681 NC_008258.1 Protein Homology CDS 3767721 3768101 . + 0 ID=cds3954;Parent=gene4041;Dbxref=Genbank:WP_000032578.1;Name=WP_000032578.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000032578.1;transl_table=11 NC_008258.1 RefSeq gene 3768142 3769092 . - . ID=gene4042;Name=SFV_RS20305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20305;old_locus_tag=SFV_3682 NC_008258.1 Protein Homology CDS 3768142 3769092 . - 0 ID=cds3955;Parent=gene4042;Dbxref=Genbank:WP_000947159.1;Name=WP_000947159.1;Note=responsible for the influx of magnesium ions;gbkey=CDS;product=magnesium transporter CorA;protein_id=WP_000947159.1;transl_table=11 NC_008258.1 RefSeq gene 3769336 3769470 . - . ID=gene4043;Name=SFV_RS20310;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20310;pseudo=true NC_008258.1 Protein Homology CDS 3769336 3769470 . - 0 ID=cds3956;Parent=gene4043;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:complement(3769450..3769452)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3769462 3769797 . + . ID=gene4044;Name=SFV_RS20315;end_range=3769797,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20315;old_locus_tag=SFV_3683;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3769462 3769797 . + 0 ID=cds3957;Parent=gene4044;end_range=3769797,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3769789 3771227 . + . ID=id586;gbkey=repeat_region NC_008258.1 RefSeq region 3769797 3771224 . - . ID=id587;gbkey=mobile_element NC_008258.1 RefSeq gene 3769811 3771139 . - . ID=gene4045;Name=SFV_RS20320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20320;old_locus_tag=SFV_3684 NC_008258.1 Protein Homology CDS 3769811 3771139 . - 0 ID=cds3958;Parent=gene4045;Dbxref=Genbank:WP_000547356.1;Name=WP_000547356.1;gbkey=CDS;product=transposase;protein_id=WP_000547356.1;transl_table=11 NC_008258.1 RefSeq gene 3771125 3771664 . + . ID=gene4046;Name=SFV_RS20325;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20325;partial=true;pseudo=true;start_range=.,3771125 NC_008258.1 Protein Homology CDS 3771125 3771664 . + 0 ID=cds3959;Parent=gene4046;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,3771125;transl_except=(pos:3771212..3771214%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3771812 3773974 . - . ID=gene4047;Name=uvrD;gbkey=Gene;gene=uvrD;gene_biotype=protein_coding;locus_tag=SFV_RS20330;old_locus_tag=SFV_3686 NC_008258.1 Protein Homology CDS 3771812 3773974 . - 0 ID=cds3960;Parent=gene4047;Dbxref=Genbank:WP_000383393.1;Name=WP_000383393.1;Note=unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present%3B involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.;gbkey=CDS;gene=uvrD;product=DNA-dependent helicase;protein_id=WP_000383393.1;transl_table=11 NC_008258.1 RefSeq gene 3774058 3774774 . - . ID=gene4048;Name=SFV_RS20335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20335;old_locus_tag=SFV_3687 NC_008258.1 Protein Homology CDS 3774058 3774774 . - 0 ID=cds3961;Parent=gene4048;Dbxref=Genbank:WP_001213584.1;Name=WP_001213584.1;Note=YigB%3B member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein%3B unknown function;gbkey=CDS;product=flavin mononucleotide phosphatase YigB;protein_id=WP_001213584.1;transl_table=11 NC_008258.1 RefSeq gene 3774774 3775670 . - . ID=gene4049;Name=xerC;gbkey=Gene;gene=xerC;gene_biotype=protein_coding;locus_tag=SFV_RS20340;old_locus_tag=SFV_3688 NC_008258.1 Protein Homology CDS 3774774 3775670 . - 0 ID=cds3962;Parent=gene4049;Dbxref=Genbank:WP_000130683.1;Name=WP_000130683.1;Note=site-specific tyrosine recombinase which cuts and rejoins DNA molecules%3B binds cooperatively to specific DNA consensus sites%3B forms a heterotetrameric complex with XerC%3B XerCD exhibit similar sequences%3B essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation%3B cell division protein FtsK may regulate the XerCD complex%3B enzyme from Streptococcus group has unusual active site motifs;gbkey=CDS;gene=xerC;product=tyrosine recombinase XerC;protein_id=WP_000130683.1;transl_table=11 NC_008258.1 RefSeq gene 3775667 3776374 . - . ID=gene4050;Name=SFV_RS20345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20345;old_locus_tag=SFV_3689 NC_008258.1 Protein Homology CDS 3775667 3776374 . - 0 ID=cds3963;Parent=gene4050;Dbxref=Genbank:WP_000812796.1;Name=WP_000812796.1;gbkey=CDS;product=DUF484 domain-containing protein;protein_id=WP_000812796.1;transl_table=11 NC_008258.1 RefSeq gene 3776371 3777195 . - . ID=gene4051;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=SFV_RS20350;old_locus_tag=SFV_3690 NC_008258.1 Protein Homology CDS 3776371 3777195 . - 0 ID=cds3964;Parent=gene4051;Dbxref=Genbank:WP_005001985.1;Name=WP_005001985.1;Note=involved in lysine biosynthesis%3B DAP epimerase%3B produces DL-diaminopimelate from LL-diaminopimelate;gbkey=CDS;gene=dapF;product=diaminopimelate epimerase;protein_id=WP_005001985.1;transl_table=11 NC_008258.1 RefSeq gene 3777232 3777435 . - . ID=gene4052;Name=SFV_RS20355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20355;old_locus_tag=SFV_3691 NC_008258.1 Protein Homology CDS 3777232 3777435 . - 0 ID=cds3965;Parent=gene4052;Dbxref=Genbank:WP_000799889.1;Name=WP_000799889.1;gbkey=CDS;product=membrane protein;protein_id=WP_000799889.1;transl_table=11 NC_008258.1 RefSeq gene 3777624 3779102 . + . ID=gene4053;Name=SFV_RS20360;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20360;pseudo=true NC_008258.1 Protein Homology CDS 3777624 3779102 . + 0 ID=cds3966;Parent=gene4053;gbkey=CDS;product=DKNYY family protein;pseudo=true;transl_except=(pos:3778773..3778775%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3779099 3780408 . + . ID=gene4054;Name=SFV_RS20365;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20365;pseudo=true NC_008258.1 Protein Homology CDS 3779099 3780408 . + 0 ID=cds3967;Parent=gene4054;exception=annotated by transcript or proteomic data;gbkey=CDS;product=DKNYY family protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3780456 3780776 . + . ID=gene4055;Name=cyaY;gbkey=Gene;gene=cyaY;gene_biotype=protein_coding;locus_tag=SFV_RS20370;old_locus_tag=SFV_3695 NC_008258.1 Protein Homology CDS 3780456 3780776 . + 0 ID=cds3968;Parent=gene4055;Dbxref=Genbank:WP_000999938.1;Name=WP_000999938.1;Note=iron-dependent inhibitor of iron-sulfur cluster formation%3B iron-binding and oxidizing protein%3B defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease%3B based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly;gbkey=CDS;gene=cyaY;product=protein CyaY;protein_id=WP_000999938.1;transl_table=11 NC_008258.1 RefSeq gene 3780816 3783362 . - . ID=gene4056;Name=cyaA;gbkey=Gene;gene=cyaA;gene_biotype=protein_coding;locus_tag=SFV_RS20375;old_locus_tag=SFV_3696 NC_008258.1 Protein Homology CDS 3780816 3783362 . - 0 ID=cds3969;Parent=gene4056;Dbxref=Genbank:WP_000281679.1;Name=WP_000281679.1;Note=catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP;gbkey=CDS;gene=cyaA;product=adenylate cyclase;protein_id=WP_000281679.1;transl_table=11 NC_008258.1 RefSeq gene 3783749 3784690 . + . ID=gene4057;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=SFV_RS20380;old_locus_tag=SFV_3697 NC_008258.1 Protein Homology CDS 3783749 3784690 . + 0 ID=cds3970;Parent=gene4057;Dbxref=Genbank:WP_005052874.1;Name=WP_005052874.1;Note=transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis;gbkey=CDS;gene=hemC;product=porphobilinogen deaminase;protein_id=WP_005052874.1;transl_table=11 NC_008258.1 RefSeq gene 3784687 3785427 . + . ID=gene4058;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=SFV_RS20385;old_locus_tag=SFV_3698 NC_008258.1 Protein Homology CDS 3784687 3785427 . + 0 ID=cds3971;Parent=gene4058;Dbxref=Genbank:WP_000026057.1;Name=WP_000026057.1;Note=catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane%3B functions in tetrapyrrole and heme biosynthesis;gbkey=CDS;gene=hemD;product=uroporphyrinogen III methyltransferase;protein_id=WP_000026057.1;transl_table=11 NC_008258.1 RefSeq gene 3785449 3786666 . + . ID=gene4059;Name=SFV_RS20390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20390;old_locus_tag=SFV_3699 NC_008258.1 Protein Homology CDS 3785449 3786666 . + 0 ID=cds3972;Parent=gene4059;Dbxref=Genbank:WP_000139017.1;Name=WP_000139017.1;gbkey=CDS;product=uroporphyrinogen III methyltransferase;protein_id=WP_000139017.1;transl_table=11 NC_008258.1 RefSeq gene 3786669 3787865 . + . ID=gene4060;Name=SFV_RS20395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20395;old_locus_tag=SFV_3700 NC_008258.1 Protein Homology CDS 3786669 3787865 . + 0 ID=cds3973;Parent=gene4060;Dbxref=Genbank:WP_000921791.1;Name=WP_000921791.1;gbkey=CDS;product=heme biosynthesis protein HemY;protein_id=WP_000921791.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3788635 3789968 . + . ID=id588;gbkey=repeat_region NC_008258.1 RefSeq region 3788636 3789966 . + . ID=id589;gbkey=mobile_element NC_008258.1 RefSeq gene 3788727 3789092 . + . ID=gene4061;Name=SFV_RS20405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20405;old_locus_tag=SFV_3701 NC_008258.1 Protein Homology CDS 3788727 3789092 . + 0 ID=cds3974;Parent=gene4061;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 3789050 3789955 . + . ID=gene4062;Name=SFV_RS20410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20410;old_locus_tag=SFV_3702 NC_008258.1 Protein Homology CDS 3789050 3789955 . + 0 ID=cds3975;Parent=gene4062;Dbxref=Genbank:WP_011069578.1;Name=WP_011069578.1;gbkey=CDS;product=integrase;protein_id=WP_011069578.1;transl_table=11 NC_008258.1 RefSeq gene 3790125 3791360 . - . ID=gene4063;Name=SFV_RS20420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20420;old_locus_tag=SFV_3703 NC_008258.1 Protein Homology CDS 3790125 3791360 . - 0 ID=cds3976;Parent=gene4063;Dbxref=Genbank:WP_000941512.1;Name=WP_000941512.1;gbkey=CDS;product=anaerobic sulfatase maturase AslB;protein_id=WP_000941512.1;transl_table=11 NC_008258.1 RefSeq gene 3791507 3791583 . - . ID=gene4064;Name=SFV_RS20425;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20425;old_locus_tag=SFV_3704 NC_008258.1 tRNAscan-SE tRNA 3791507 3791583 . - . ID=rna87;Parent=gene4064;anticodon=(pos:complement(3791547..3791549));gbkey=tRNA;product=tRNA-Pro NC_008258.1 tRNAscan-SE exon 3791507 3791583 . - . ID=id590;Parent=rna87;anticodon=(pos:complement(3791547..3791549));gbkey=tRNA;product=tRNA-Pro NC_008258.1 RefSeq gene 3791626 3791712 . - . ID=gene4065;Name=SFV_RS20430;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20430;old_locus_tag=SFV_3705 NC_008258.1 tRNAscan-SE tRNA 3791626 3791712 . - . ID=rna88;Parent=gene4065;anticodon=(pos:complement(3791676..3791678));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 3791626 3791712 . - . ID=id591;Parent=rna88;anticodon=(pos:complement(3791676..3791678));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 3791733 3791808 . - . ID=gene4066;Name=SFV_RS20435;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20435;old_locus_tag=SFV_3706 NC_008258.1 tRNAscan-SE tRNA 3791733 3791808 . - . ID=rna89;Parent=gene4066;anticodon=(pos:complement(3791773..3791775));gbkey=tRNA;product=tRNA-His NC_008258.1 tRNAscan-SE exon 3791733 3791808 . - . ID=id592;Parent=rna89;anticodon=(pos:complement(3791773..3791775));gbkey=tRNA;product=tRNA-His NC_008258.1 RefSeq gene 3791867 3791943 . - . ID=gene4067;Name=SFV_RS20440;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20440;old_locus_tag=SFV_3707 NC_008258.1 tRNAscan-SE tRNA 3791867 3791943 . - . ID=rna90;Parent=gene4067;anticodon=(pos:complement(3791907..3791909));gbkey=tRNA;product=tRNA-Arg NC_008258.1 tRNAscan-SE exon 3791867 3791943 . - . ID=id593;Parent=rna90;anticodon=(pos:complement(3791907..3791909));gbkey=tRNA;product=tRNA-Arg NC_008258.1 RefSeq gene 3792046 3793431 . - . ID=gene4068;Name=SFV_RS20445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20445;old_locus_tag=SFV_3708 NC_008258.1 Protein Homology CDS 3792046 3793431 . - 0 ID=cds3977;Parent=gene4068;Dbxref=Genbank:WP_000774749.1;Name=WP_000774749.1;Note=involved in the transport across the cytoplasmic membrane of D-alanine%2C D-serine and glycine;gbkey=CDS;product=alanine glycine permease;protein_id=WP_000774749.1;transl_table=11 NC_008258.1 RefSeq gene 3793622 3794362 . - . ID=gene4069;Name=SFV_RS20450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20450;old_locus_tag=SFV_3709 NC_008258.1 Protein Homology CDS 3793622 3794362 . - 0 ID=cds3978;Parent=gene4069;Dbxref=Genbank:WP_001064038.1;Name=WP_001064038.1;gbkey=CDS;product=UDP-N-acetyl-D-mannosaminuronic acid transferase;protein_id=WP_001064038.1;transl_table=11 NC_008258.1 RefSeq gene 3794365 3795717 . - . ID=gene4070;Name=SFV_RS20455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20455;old_locus_tag=SFV_3710 NC_008258.1 Protein Homology CDS 3794365 3795717 . - 0 ID=cds3979;Parent=gene4070;Dbxref=Genbank:WP_000055132.1;Name=WP_000055132.1;Note=enterobacterial common antigen polymerase;gbkey=CDS;product=polymerase;protein_id=WP_000055132.1;transl_table=11 NC_008258.1 RefSeq gene 3795714 3796793 . - . ID=gene4071;Name=SFV_RS20460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20460;old_locus_tag=SFV_3711 NC_008258.1 Protein Homology CDS 3795714 3796793 . - 0 ID=cds3980;Parent=gene4071;Dbxref=Genbank:WP_000217247.1;Name=WP_000217247.1;Note=catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis;gbkey=CDS;product=TDP-N-acetylfucosamine--lipid II N-acetylfucosaminyltransferase;protein_id=WP_000217247.1;transl_table=11 NC_008258.1 RefSeq gene 3796790 3798040 . - . ID=gene4072;Name=SFV_RS20465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20465;old_locus_tag=SFV_3712 NC_008258.1 Protein Homology CDS 3796790 3798040 . - 0 ID=cds3981;Parent=gene4072;Dbxref=Genbank:WP_000050252.1;Name=WP_000050252.1;Note=involved in the movement of lipid III across the membrane;gbkey=CDS;product=translocase;protein_id=WP_000050252.1;transl_table=11 NC_008258.1 RefSeq gene 3798042 3799172 . - . ID=gene4073;Name=SFV_RS20470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20470;old_locus_tag=SFV_3713 NC_008258.1 Protein Homology CDS 3798042 3799172 . - 0 ID=cds3982;Parent=gene4073;Dbxref=Genbank:WP_000612053.1;Name=WP_000612053.1;Note=catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis;gbkey=CDS;product=TDP-4-oxo-6-deoxy-D-glucose aminotransferase;protein_id=WP_000612053.1;transl_table=11 NC_008258.1 RefSeq gene 3799177 3799851 . - . ID=gene4074;Name=SFV_RS20475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20475;old_locus_tag=SFV_3714 NC_008258.1 Protein Homology CDS 3799177 3799851 . - 0 ID=cds3983;Parent=gene4074;Dbxref=Genbank:WP_001145201.1;Name=WP_001145201.1;gbkey=CDS;product=TDP-fucosamine acetyltransferase;protein_id=WP_001145201.1;transl_table=11 NC_008258.1 RefSeq gene 3799829 3800710 . - . ID=gene4075;Name=SFV_RS20480;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20480;old_locus_tag=SFV_3715 NC_008258.1 Protein Homology CDS 3799829 3800710 . - 0 ID=cds3984;Parent=gene4075;Dbxref=Genbank:WP_000676056.1;Name=WP_000676056.1;gbkey=CDS;product=glucose-1-phosphate thymidylyltransferase 2;protein_id=WP_000676056.1;transl_table=11 NC_008258.1 RefSeq gene 3800729 3801796 . - . ID=gene4076;Name=SFV_RS20485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20485;old_locus_tag=SFV_3716 NC_008258.1 Protein Homology CDS 3800729 3801796 . - 0 ID=cds3985;Parent=gene4076;Dbxref=Genbank:WP_001226607.1;Name=WP_001226607.1;gbkey=CDS;product=dTDP-glucose 4%2C6-dehydratase;protein_id=WP_001226607.1;transl_table=11 NC_008258.1 RefSeq gene 3801796 3803058 . - . ID=gene4077;Name=wecC;gbkey=Gene;gene=wecC;gene_biotype=protein_coding;locus_tag=SFV_RS20490;old_locus_tag=SFV_3717 NC_008258.1 Protein Homology CDS 3801796 3803058 . - 0 ID=cds3986;Parent=gene4077;Dbxref=Genbank:WP_000006621.1;Name=WP_000006621.1;Note=catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid;gbkey=CDS;gene=wecC;product=UDP-N-acetyl-D-mannosamine dehydrogenase;protein_id=WP_000006621.1;transl_table=11 NC_008258.1 RefSeq gene 3803055 3804185 . - . ID=gene4078;Name=SFV_RS20495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20495;old_locus_tag=SFV_3718 NC_008258.1 Protein Homology CDS 3803055 3804185 . - 0 ID=cds3987;Parent=gene4078;Dbxref=Genbank:WP_005106033.1;Name=WP_005106033.1;gbkey=CDS;product=UDP-N-acetylglucosamine 2-epimerase;protein_id=WP_005106033.1;transl_table=11 NC_008258.1 RefSeq gene 3804241 3805287 . - . ID=gene4079;Name=SFV_RS20500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20500;old_locus_tag=SFV_3719 NC_008258.1 Protein Homology CDS 3804241 3805287 . - 0 ID=cds3988;Parent=gene4079;Dbxref=Genbank:WP_005106034.1;Name=WP_005106034.1;Note=Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_005106034.1;transl_table=11 NC_008258.1 RefSeq gene 3805299 3806402 . - . ID=gene4080;Name=SFV_RS20505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20505;old_locus_tag=SFV_3720 NC_008258.1 Protein Homology CDS 3805299 3806402 . - 0 ID=cds3989;Parent=gene4080;Dbxref=Genbank:WP_001050960.1;Name=WP_001050960.1;Note=catalyzes the formation of alpha-N-acetylglucosaminyl-pyrophosphoryl-undecaprenyl from alpha-N-acetylglucosaminyl 1-phosphate and the lipid carrier undecaprenyl phosphate;gbkey=CDS;product=undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase;protein_id=WP_001050960.1;transl_table=11 NC_008258.1 RefSeq gene 3806414 3806632 . - . ID=gene4081;Name=SFV_RS20510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20510;old_locus_tag=SFV_3721 NC_008258.1 Protein Homology CDS 3806414 3806632 . - 0 ID=cds3990;Parent=gene4081;Dbxref=Genbank:WP_001127088.1;Name=WP_001127088.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001127088.1;transl_table=11 NC_008258.1 RefSeq gene 3806642 3807901 . - . ID=gene4082;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=SFV_RS20515;old_locus_tag=SFV_3722 NC_008258.1 Protein Homology CDS 3806642 3807901 . - 0 ID=cds3991;Parent=gene4082;Dbxref=Genbank:WP_001054527.1;Name=WP_001054527.1;Note=An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes;gbkey=CDS;gene=rho;product=transcription termination factor Rho;protein_id=WP_001054527.1;transl_table=11 NC_008258.1 RefSeq gene 3807986 3808087 . - . ID=gene4083;Name=SFV_RS20520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20520 NC_008258.1 Protein Homology CDS 3807986 3808087 . - 0 ID=cds3992;Parent=gene4083;Dbxref=Genbank:WP_001295255.1;Name=WP_001295255.1;gbkey=CDS;product=rho operon leader peptide;protein_id=WP_001295255.1;transl_table=11 NC_008258.1 RefSeq gene 3808228 3808557 . - . ID=gene4084;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=SFV_RS20525 NC_008258.1 Protein Homology CDS 3808228 3808557 . - 0 ID=cds3993;Parent=gene4084;Dbxref=Genbank:WP_001280776.1;Name=WP_001280776.1;gbkey=CDS;gene=trxA;product=thioredoxin;protein_id=WP_001280776.1;transl_table=11 NC_008258.1 RefSeq gene 3808688 3809953 . + . ID=gene4085;Name=SFV_RS20530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20530;old_locus_tag=SFV_3724 NC_008258.1 Protein Homology CDS 3808688 3809953 . + 0 ID=cds3994;Parent=gene4085;Dbxref=Genbank:WP_000047497.1;Name=WP_000047497.1;Note=enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome%2C a multi-enzyme complex important in RNA processing and messenger RNA degradation;gbkey=CDS;product=ATP-dependent RNA helicase RhlB;protein_id=WP_000047497.1;transl_table=11 NC_008258.1 RefSeq gene 3810087 3811571 . + . ID=gene4086;Name=SFV_RS20535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20535;old_locus_tag=SFV_3725 NC_008258.1 Protein Homology CDS 3810087 3811571 . + 0 ID=cds3995;Parent=gene4086;Dbxref=Genbank:WP_000535983.1;Name=WP_000535983.1;Note=catalyzes the conversion of guanosine 5'-triphosphate%2C3'-diphosphate (pppGpp) to guanosine 5'-diphosphate%2C3'-diphosphate (ppGpp)%3B pppGpp and ppGpp control the stringent response during amino acid starvation;gbkey=CDS;product=guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase;protein_id=WP_000535983.1;transl_table=11 NC_008258.1 RefSeq gene 3811618 3813639 . - . ID=gene4087;Name=SFV_RS20540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20540;old_locus_tag=SFV_3726 NC_008258.1 Protein Homology CDS 3811618 3813639 . - 0 ID=cds3996;Parent=gene4087;Dbxref=Genbank:WP_024260318.1;Name=WP_024260318.1;Note=single-stranded DNA-dependent ATPase%3B initiates unwinding at a nick in the DNA%3B involved in DNA replication;gbkey=CDS;product=ATP-dependent DNA helicase Rep;protein_id=WP_024260318.1;transl_table=11 NC_008258.1 RefSeq gene 3813726 3814007 . + . ID=gene4088;Name=SFV_RS20545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20545;old_locus_tag=SFV_3727 NC_008258.1 Protein Homology CDS 3813726 3814007 . + 0 ID=cds3997;Parent=gene4088;Dbxref=Genbank:WP_001140256.1;Name=WP_001140256.1;Note=rotamase C%3B accelerates isomerization of the peptidyl prolyl bond;gbkey=CDS;product=peptidyl-prolyl cis-trans isomerase;protein_id=WP_001140256.1;transl_table=11 NC_008258.1 RefSeq gene 3814053 3815528 . - . ID=gene4089;Name=SFV_RS20550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20550;old_locus_tag=SFV_3729 NC_008258.1 Protein Homology CDS 3814053 3815528 . - 0 ID=cds3998;Parent=gene4089;Dbxref=Genbank:WP_000024951.1;Name=WP_000024951.1;Note=catalyzes the formation of (R)-2%2C3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=ketol-acid reductoisomerase;protein_id=WP_000024951.1;transl_table=11 NC_008258.1 RefSeq gene 3815678 3816568 . + . ID=gene4090;Name=SFV_RS20555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20555;old_locus_tag=SFV_3728 NC_008258.1 Protein Homology CDS 3815678 3816568 . + 0 ID=cds3999;Parent=gene4090;Dbxref=Genbank:WP_000365767.1;Name=WP_000365767.1;Note=participates in controlling several genes involved in isoleucine and valine biosynthesis%3B activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000365767.1;transl_table=11 NC_008258.1 RefSeq gene 3816565 3818109 . - . ID=gene4091;Name=SFV_RS20560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20560;old_locus_tag=SFV_3730 NC_008258.1 Protein Homology CDS 3816565 3818109 . - 0 ID=cds4000;Parent=gene4091;Dbxref=Genbank:WP_000785599.1;Name=WP_000785599.1;Note=threonine deaminase%3B threonine dehydratase%3B in Escherichia coli%2C IlvA is part of the isoleucine biosynthetic pathway;gbkey=CDS;product=threonine dehydratase;protein_id=WP_000785599.1;transl_table=11 NC_008258.1 RefSeq gene 3818112 3819962 . - . ID=gene4092;Name=SFV_RS20565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20565;old_locus_tag=SFV_3731 NC_008258.1 Protein Homology CDS 3818112 3819962 . - 0 ID=cds4001;Parent=gene4092;Dbxref=Genbank:WP_001127394.1;Name=WP_001127394.1;Note=catalyzes the dehydration of 2%2C3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis;gbkey=CDS;product=dihydroxy-acid dehydratase;protein_id=WP_001127394.1;transl_table=11 NC_008258.1 RefSeq gene 3820027 3820956 . - . ID=gene4093;Name=SFV_RS20570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20570;old_locus_tag=SFV_3732 NC_008258.1 Protein Homology CDS 3820027 3820956 . - 0 ID=cds4002;Parent=gene4093;Dbxref=Genbank:WP_000208517.1;Name=WP_000208517.1;gbkey=CDS;product=branched-chain amino acid aminotransferase;protein_id=WP_000208517.1;transl_table=11 NC_008258.1 RefSeq gene 3820976 3821239 . - . ID=gene4094;Name=ilvM;gbkey=Gene;gene=ilvM;gene_biotype=protein_coding;locus_tag=SFV_RS20575;old_locus_tag=SFV_3733 NC_008258.1 Protein Homology CDS 3820976 3821239 . - 0 ID=cds4003;Parent=gene4094;Dbxref=Genbank:WP_000983255.1;Name=WP_000983255.1;gbkey=CDS;gene=ilvM;product=acetolactate synthase isozyme 2 small subunit;protein_id=WP_000983255.1;transl_table=11 NC_008258.1 RefSeq gene 3821236 3822882 . - . ID=gene4095;Name=SFV_RS20580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20580;old_locus_tag=SFV_3734 NC_008258.1 Protein Homology CDS 3821236 3822882 . - 0 ID=cds4004;Parent=gene4095;Dbxref=Genbank:WP_001012616.1;Name=WP_001012616.1;Note=catalyzes the formation of 2-acetolactate from pyruvate%3B also known as acetolactate synthase large subunit;gbkey=CDS;product=acetolactate synthase;protein_id=WP_001012616.1;transl_table=11 NC_008258.1 RefSeq gene 3823021 3823119 . - . ID=gene4096;Name=SFV_RS20585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20585 NC_008258.1 Protein Homology CDS 3823021 3823119 . - 0 ID=cds4005;Parent=gene4096;Dbxref=Genbank:WP_001311244.1;Name=WP_001311244.1;gbkey=CDS;product=IlvGMEDA operon leader peptide;protein_id=WP_001311244.1;transl_table=11 NC_008258.1 RefSeq gene 3823471 3824991 . + . ID=gene4097;Name=SFV_RS20590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20590;old_locus_tag=SFV_3735 NC_008258.1 Protein Homology CDS 3823471 3824991 . + 0 ID=cds4006;Parent=gene4097;Dbxref=Genbank:WP_000058936.1;Name=WP_000058936.1;Note=among the AAA+ ATPases%2C the YifB protease family belongs to the Helix 2 insert clade%3B unknown function;gbkey=CDS;product=ATP-dependent protease;protein_id=WP_000058936.1;transl_table=11 NC_008258.1 RefSeq gene 3825016 3825354 . - . ID=gene4098;Name=SFV_RS20595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20595;old_locus_tag=SFV_3736 NC_008258.1 Protein Homology CDS 3825016 3825354 . - 0 ID=cds4007;Parent=gene4098;Dbxref=Genbank:WP_000841001.1;Name=WP_000841001.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000841001.1;transl_table=11 NC_008258.1 RefSeq gene 3825473 3826312 . + . ID=gene4099;Name=SFV_RS20600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20600;old_locus_tag=SFV_3737 NC_008258.1 Protein Homology CDS 3825473 3826312 . + 0 ID=cds4008;Parent=gene4099;Dbxref=Genbank:WP_000379245.1;Name=WP_000379245.1;Note=Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000379245.1;transl_table=11 NC_008258.1 RefSeq gene 3826408 3826483 . - . ID=gene4100;Name=SFV_RS20605;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20605;old_locus_tag=SFV_3738 NC_008258.1 tRNAscan-SE tRNA 3826408 3826483 . - . ID=rna91;Parent=gene4100;anticodon=(pos:complement(3826448..3826450));gbkey=tRNA;product=tRNA-Trp NC_008258.1 tRNAscan-SE exon 3826408 3826483 . - . ID=id594;Parent=rna91;anticodon=(pos:complement(3826448..3826450));gbkey=tRNA;product=tRNA-Trp NC_008258.1 RefSeq repeat_region 3826491 3832000 . + . ID=id595;gbkey=repeat_region NC_008258.1 RefSeq gene 3826492 3826568 . - . ID=gene4101;Name=SFV_RS20610;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20610;old_locus_tag=SFV_3739 NC_008258.1 tRNAscan-SE tRNA 3826492 3826568 . - . ID=rna92;Parent=gene4101;anticodon=(pos:complement(3826532..3826534));gbkey=tRNA;product=tRNA-Asp NC_008258.1 tRNAscan-SE exon 3826492 3826568 . - . ID=id596;Parent=rna92;anticodon=(pos:complement(3826532..3826534));gbkey=tRNA;product=tRNA-Asp NC_008258.1 RefSeq gene 3826623 3826738 . - . ID=gene4102;Name=SFV_RS20615;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS20615;old_locus_tag=SFV_3740 NC_008258.1 cmsearch rRNA 3826623 3826738 . - . ID=rna93;Parent=gene4102;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 3826623 3826738 . - . ID=id597;Parent=rna93;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 3826822 3829746 . - . ID=gene4103;Name=SFV_RS20620;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS20620;old_locus_tag=SFV_3741 NC_008258.1 RefSeq rRNA 3826822 3829746 . - . ID=rna94;Parent=gene4103;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 3826822 3829746 . - . ID=id598;Parent=rna94;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 3829931 3830006 . - . ID=gene4104;Name=SFV_RS20625;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS20625;old_locus_tag=SFV_3742 NC_008258.1 tRNAscan-SE tRNA 3829931 3830006 . - . ID=rna95;Parent=gene4104;anticodon=(pos:complement(3829970..3829972));gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 3829931 3830006 . - . ID=id599;Parent=rna95;anticodon=(pos:complement(3829970..3829972));gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 3830080 3831635 . - . ID=gene4105;Name=SFV_RS20630;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS20630;old_locus_tag=SFV_3743 NC_008258.1 RefSeq rRNA 3830080 3831635 . - . ID=rna96;Parent=gene4105;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 3830080 3831635 . - . ID=id600;Parent=rna96;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq gene 3832116 3832808 . + . ID=gene4106;Name=SFV_RS20635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20635;old_locus_tag=SFV_3744 NC_008258.1 Protein Homology CDS 3832116 3832808 . + 0 ID=cds4009;Parent=gene4106;Dbxref=Genbank:WP_001131160.1;Name=WP_001131160.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_001131160.1;transl_table=11 NC_008258.1 RefSeq gene 3832831 3834258 . + . ID=gene4107;Name=SFV_RS20640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20640;old_locus_tag=SFV_3745 NC_008258.1 Protein Homology CDS 3832831 3834258 . + 0 ID=cds4010;Parent=gene4107;Dbxref=Genbank:WP_001280876.1;Name=WP_001280876.1;gbkey=CDS;product=transporter;protein_id=WP_001280876.1;transl_table=11 NC_008258.1 RefSeq gene 3834224 3835207 . - . ID=gene4108;Name=SFV_RS20645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20645;old_locus_tag=SFV_3746 NC_008258.1 Protein Homology CDS 3834224 3835207 . - 0 ID=cds4011;Parent=gene4108;Dbxref=Genbank:WP_005106037.1;Name=WP_005106037.1;Note=binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis%3B is involved in regulation of purB%2C purC%2C purEK%2C purHD%2C purL%2C purMN and guaBA expression%3B binds hypoxanthine and guanine as inducers;gbkey=CDS;product=LacI family transcriptional regulator;protein_id=WP_005106037.1;transl_table=11 NC_008258.1 RefSeq gene 3835220 3836149 . - . ID=gene4109;Name=SFV_RS20650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20650;old_locus_tag=SFV_3747 NC_008258.1 Protein Homology CDS 3835220 3836149 . - 0 ID=cds4012;Parent=gene4109;Dbxref=Genbank:WP_005051970.1;Name=WP_005051970.1;Note=catalyzes the formation of D-ribose 5-phosphate from ribose;gbkey=CDS;product=ribokinase;protein_id=WP_005051970.1;transl_table=11 NC_008258.1 RefSeq gene 3836275 3837161 . - . ID=gene4110;Name=SFV_RS20655;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20655;pseudo=true NC_008258.1 Protein Homology CDS 3836275 3837161 . - 0 ID=cds4013;Parent=gene4110;Note=periplasmic substrate-binding component of the ATP-dependent ribose transport system;exception=annotated by transcript or proteomic data;gbkey=CDS;product=D-ribose transporter subunit RbsB;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3837186 3838151 . - . ID=gene4111;Name=rbsC;gbkey=Gene;gene=rbsC;gene_biotype=protein_coding;locus_tag=SFV_RS20660;old_locus_tag=SFV_3749 NC_008258.1 Protein Homology CDS 3837186 3838151 . - 0 ID=cds4014;Parent=gene4111;Dbxref=Genbank:WP_000632679.1;Name=WP_000632679.1;Note=functions to transport ribose at high affinity%3B forms a complex with RbsA2C2B;gbkey=CDS;gene=rbsC;product=ribose ABC transporter permease;protein_id=WP_000632679.1;transl_table=11 NC_008258.1 RefSeq gene 3838156 3839315 . - . ID=gene4112;Name=SFV_RS20665;end_range=3839315,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20665;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3838156 3839315 . - 0 ID=cds4015;Parent=gene4112;end_range=3839315,.;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=sugar ABC transporter ATP-binding protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3839315 3840090 . + . ID=id601;gbkey=repeat_region NC_008258.1 RefSeq region 3839318 3840085 . - . ID=id602;gbkey=mobile_element NC_008258.1 RefSeq gene 3839333 3839728 . - . ID=gene4113;Name=SFV_RS20670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20670 NC_008258.1 Protein Homology CDS 3839333 3839728 . - 0 ID=cds4016;Parent=gene4113;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 3839755 3839979 . - . ID=gene4114;Name=SFV_RS20675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20675 NC_008258.1 Protein Homology CDS 3839755 3839979 . - 0 ID=cds4017;Parent=gene4114;Dbxref=Genbank:WP_001243684.1;Name=WP_001243684.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001243684.1;transl_table=11 NC_008258.1 RefSeq gene 3840081 3840437 . - . ID=gene4115;Name=SFV_RS20680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20680 NC_008258.1 Protein Homology CDS 3840081 3840437 . - 0 ID=cds4018;Parent=gene4115;Dbxref=Genbank:WP_000387787.1;Name=WP_000387787.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_000387787.1;transl_table=11 NC_008258.1 RefSeq gene 3840445 3840864 . - . ID=gene4116;Name=SFV_RS20685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20685;old_locus_tag=SFV_3752 NC_008258.1 Protein Homology CDS 3840445 3840864 . - 0 ID=cds4019;Parent=gene4116;Dbxref=Genbank:WP_000715936.1;Name=WP_000715936.1;Note=cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose%3B RbsD is required for efficient ribose utilization in E. coli%3B rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source;gbkey=CDS;product=D-ribose pyranase;protein_id=WP_000715936.1;transl_table=11 NC_008258.1 RefSeq gene 3841031 3842899 . - . ID=gene4117;Name=trkD;gbkey=Gene;gene=trkD;gene_biotype=protein_coding;locus_tag=SFV_RS20690;old_locus_tag=SFV_3753 NC_008258.1 Protein Homology CDS 3841031 3842899 . - 0 ID=cds4020;Parent=gene4117;Dbxref=Genbank:WP_000102296.1;Name=WP_000102296.1;Note=Responsible for the low-affinity transport of potassium into the cell%3B involved in potassium ion uptake under hyper-osmotic stress at a low pH;gbkey=CDS;gene=trkD;product=low affinity potassium transport system protein kup;protein_id=WP_000102296.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3843041 3844475 . + . ID=id603;gbkey=repeat_region NC_008258.1 RefSeq region 3843043 3844470 . - . ID=id604;gbkey=mobile_element NC_008258.1 RefSeq gene 3843057 3844385 . - . ID=gene4118;Name=SFV_RS20695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20695;old_locus_tag=SFV_3754 NC_008258.1 Protein Homology CDS 3843057 3844385 . - 0 ID=cds4021;Parent=gene4118;Dbxref=Genbank:WP_000547026.1;Name=WP_000547026.1;gbkey=CDS;product=transposase;protein_id=WP_000547026.1;transl_table=11 NC_008258.1 RefSeq gene 3844506 3846335 . - . ID=gene4119;Name=SFV_RS20700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20700;old_locus_tag=SFV_3755 NC_008258.1 Protein Homology CDS 3844506 3846335 . - 0 ID=cds4022;Parent=gene4119;Dbxref=Genbank:WP_000334086.1;Name=WP_000334086.1;Note=Catalyzes the first step in hexosamine metabolism%2C converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source;gbkey=CDS;product=glutamine--fructose-6-phosphate aminotransferase [isomerizing];protein_id=WP_000334086.1;transl_table=11 NC_008258.1 RefSeq gene 3846497 3847867 . - . ID=gene4120;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=SFV_RS20705;old_locus_tag=SFV_3756 NC_008258.1 Protein Homology CDS 3846497 3847867 . - 0 ID=cds4023;Parent=gene4120;Dbxref=Genbank:WP_000933743.1;Name=WP_000933743.1;Note=forms a homotrimer%3B catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc%3B function in cell wall synthesis;gbkey=CDS;gene=glmU;product=bifunctional protein GlmU;protein_id=WP_000933743.1;transl_table=11 NC_008258.1 RefSeq gene 3848219 3848638 . - . ID=gene4121;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=SFV_RS20710;old_locus_tag=SFV_3757 NC_008258.1 Protein Homology CDS 3848219 3848638 . - 0 ID=cds4024;Parent=gene4121;Dbxref=Genbank:WP_001251965.1;Name=WP_001251965.1;Note=part of catalytic core of ATP synthase%3B alpha(3)beta(3)gamma(1)delta(1)epsilon(1)%3B involved in producing ATP from ADP in the presence of the proton motive force across the membrane;gbkey=CDS;gene=atpC;product=ATP synthase epsilon chain;protein_id=WP_001251965.1;transl_table=11 NC_008258.1 RefSeq gene 3848659 3850041 . - . ID=gene4122;Name=SFV_RS20715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20715;old_locus_tag=SFV_3758 NC_008258.1 Protein Homology CDS 3848659 3850041 . - 0 ID=cds4025;Parent=gene4122;Dbxref=Genbank:WP_000190506.1;Name=WP_000190506.1;gbkey=CDS;product=ATP synthase subunit beta;protein_id=WP_000190506.1;transl_table=11 NC_008258.1 RefSeq gene 3850068 3850931 . - . ID=gene4123;Name=SFV_RS20720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20720;old_locus_tag=SFV_3759 NC_008258.1 Protein Homology CDS 3850068 3850931 . - 0 ID=cds4026;Parent=gene4123;Dbxref=Genbank:WP_000896498.1;Name=WP_000896498.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit;gbkey=CDS;product=ATP synthase subunit gamma;protein_id=WP_000896498.1;transl_table=11 NC_008258.1 RefSeq gene 3850982 3852523 . - . ID=gene4124;Name=SFV_RS20725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20725;old_locus_tag=SFV_3760 NC_008258.1 Protein Homology CDS 3850982 3852523 . - 0 ID=cds4027;Parent=gene4124;Dbxref=Genbank:WP_001176745.1;Name=WP_001176745.1;Note=produces ATP from ADP in the presence of a proton gradient across the membrane%3B the alpha chain is a catalytic subunit;gbkey=CDS;product=ATP synthase subunit alpha;protein_id=WP_001176745.1;transl_table=11 NC_008258.1 RefSeq gene 3852536 3853069 . - . ID=gene4125;Name=SFV_RS20730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20730;old_locus_tag=SFV_3761 NC_008258.1 Protein Homology CDS 3852536 3853069 . - 0 ID=cds4028;Parent=gene4125;Dbxref=Genbank:WP_001288587.1;Name=WP_001288587.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane%3B the delta subunit is part of the catalytic core of the ATP synthase complex;gbkey=CDS;product=ATP synthase subunit delta;protein_id=WP_001288587.1;transl_table=11 NC_008258.1 RefSeq gene 3853084 3853554 . - . ID=gene4126;Name=SFV_RS20735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20735;old_locus_tag=SFV_3762 NC_008258.1 Protein Homology CDS 3853084 3853554 . - 0 ID=cds4029;Parent=gene4126;Dbxref=Genbank:WP_001052219.1;Name=WP_001052219.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.;gbkey=CDS;product=ATP synthase subunit b;protein_id=WP_001052219.1;transl_table=11 NC_008258.1 RefSeq gene 3853616 3853855 . - . ID=gene4127;Name=SFV_RS20740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20740;old_locus_tag=SFV_3763 NC_008258.1 Protein Homology CDS 3853616 3853855 . - 0 ID=cds4030;Parent=gene4127;Dbxref=Genbank:WP_000429386.1;Name=WP_000429386.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0;gbkey=CDS;product=ATP synthase subunit c;protein_id=WP_000429386.1;transl_table=11 NC_008258.1 RefSeq gene 3853902 3854717 . - . ID=gene4128;Name=SFV_RS20745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20745;old_locus_tag=SFV_3764 NC_008258.1 Protein Homology CDS 3853902 3854717 . - 0 ID=cds4031;Parent=gene4128;Dbxref=Genbank:WP_000135623.1;Name=WP_000135623.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0;gbkey=CDS;product=ATP synthase subunit a;protein_id=WP_000135623.1;transl_table=11 NC_008258.1 RefSeq gene 3854726 3855106 . - . ID=gene4129;Name=SFV_RS20750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20750;old_locus_tag=SFV_3765 NC_008258.1 Protein Homology CDS 3854726 3855106 . - 0 ID=cds4032;Parent=gene4129;Dbxref=Genbank:WP_000116695.1;Name=WP_000116695.1;Note=Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation;gbkey=CDS;product=ATP synthase I;protein_id=WP_000116695.1;transl_table=11 NC_008258.1 RefSeq gene 3855723 3856346 . - . ID=gene4130;Name=gidB;gbkey=Gene;gene=gidB;gene_biotype=protein_coding;locus_tag=SFV_RS20755;old_locus_tag=SFV_3766 NC_008258.1 Protein Homology CDS 3855723 3856346 . - 0 ID=cds4033;Parent=gene4130;Dbxref=Genbank:WP_000932839.1;Name=WP_000932839.1;Note=glucose-inhibited division protein B%3B SAM-dependent methyltransferase%3B methylates the N7 position of guanosine in position 527 of 16S rRNA;gbkey=CDS;gene=gidB;product=ribosomal RNA small subunit methyltransferase G;protein_id=WP_000932839.1;transl_table=11 NC_008258.1 RefSeq gene 3856410 3858299 . - . ID=gene4131;Name=gidA;gbkey=Gene;gene=gidA;gene_biotype=protein_coding;locus_tag=SFV_RS20760;old_locus_tag=SFV_3767 NC_008258.1 Protein Homology CDS 3856410 3858299 . - 0 ID=cds4034;Parent=gene4131;Dbxref=Genbank:WP_000499813.1;Name=WP_000499813.1;Note=GidA%3B glucose-inhibited cell division protein A%3B involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs;gbkey=CDS;gene=gidA;product=tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG;protein_id=WP_000499813.1;transl_table=11 NC_008258.1 RefSeq gene 3858678 3859121 . - . ID=gene4132;Name=SFV_RS20765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20765;old_locus_tag=SFV_3768 NC_008258.1 Protein Homology CDS 3858678 3859121 . - 0 ID=cds4035;Parent=gene4132;Dbxref=Genbank:WP_000763763.1;Name=WP_000763763.1;Note=An electron-transfer protein%3B flavodoxin binds one FMN molecule%2C which serves as a redox-active prosthetic group;gbkey=CDS;product=FMN-binding protein MioC;protein_id=WP_000763763.1;transl_table=11 NC_008258.1 RefSeq gene 3859211 3859669 . - . ID=gene4133;Name=SFV_RS20770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20770;old_locus_tag=SFV_3769 NC_008258.1 Protein Homology CDS 3859211 3859669 . - 0 ID=cds4036;Parent=gene4133;Dbxref=Genbank:WP_000432970.1;Name=WP_000432970.1;Note=transcriptional repressor of asnA which codes for aspartate-ammonia ligase;gbkey=CDS;product=AsnC family transcriptional regulator;protein_id=WP_000432970.1;transl_table=11 NC_008258.1 RefSeq gene 3859821 3860813 . + . ID=gene4134;Name=SFV_RS20775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20775;old_locus_tag=SFV_3770 NC_008258.1 Protein Homology CDS 3859821 3860813 . + 0 ID=cds4037;Parent=gene4134;Dbxref=Genbank:WP_000845131.1;Name=WP_000845131.1;Note=catalyzes the formation of asparagine from aspartate and ammonia;gbkey=CDS;product=aspartate--ammonia ligase;protein_id=WP_000845131.1;transl_table=11 NC_008258.1 RefSeq gene 3860818 3862269 . - . ID=gene4135;Name=SFV_RS20780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20780;old_locus_tag=SFV_3771 NC_008258.1 Protein Homology CDS 3860818 3862269 . - 0 ID=cds4038;Parent=gene4135;Dbxref=Genbank:WP_000956623.1;Name=WP_000956623.1;Note=contains a von Willibrand factor type A domain%3B stimulates the ATPase activity of RavA;gbkey=CDS;product=protein ViaA;protein_id=WP_000956623.1;transl_table=11 NC_008258.1 RefSeq gene 3862263 3863759 . - . ID=gene4136;Name=SFV_RS20785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20785;old_locus_tag=SFV_3772 NC_008258.1 Protein Homology CDS 3862263 3863759 . - 0 ID=cds4039;Parent=gene4136;Dbxref=Genbank:WP_005097542.1;Name=WP_005097542.1;Note=interacts with LdcI%2C lysine decarboxylase%3B may be active in late log/ early stationary phase;gbkey=CDS;product=ATPase RavA;protein_id=WP_005097542.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3863844 3865275 . + . ID=id605;gbkey=repeat_region NC_008258.1 RefSeq region 3863847 3865274 . + . ID=id606;gbkey=mobile_element NC_008258.1 RefSeq gene 3863932 3865260 . + . ID=gene4137;Name=SFV_RS20790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20790;old_locus_tag=SFV_3773 NC_008258.1 Protein Homology CDS 3863932 3865260 . + 0 ID=cds4040;Parent=gene4137;Dbxref=Genbank:WP_000547274.1;Name=WP_000547274.1;gbkey=CDS;product=transposase;protein_id=WP_000547274.1;transl_table=11 NC_008258.1 RefSeq gene 3865552 3866124 . + . ID=gene4138;Name=lpfA;gbkey=Gene;gene=lpfA;gene_biotype=protein_coding;gene_synonym=stgA;locus_tag=SFV_RS20795;old_locus_tag=SFV_3774 NC_008258.1 Protein Homology CDS 3865552 3866124 . + 0 ID=cds4041;Parent=gene4138;Dbxref=Genbank:WP_000827814.1;Name=WP_000827814.1;gbkey=CDS;gene=lpfA;product=fimbrial protein;protein_id=WP_000827814.1;transl_table=11 NC_008258.1 RefSeq gene 3866238 3866894 . + . ID=gene4139;Name=lfpB;end_range=3866894,.;gbkey=Gene;gene=lfpB;gene_biotype=pseudogene;gene_synonym=stgB;locus_tag=SFV_RS20800;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3866238 3866894 . + 0 ID=cds4042;Parent=gene4139;end_range=3866894,.;exception=unextendable partial coding region;gbkey=CDS;gene=lfpB;partial=true;product=fimbrial chaperone protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3866875 3868211 . + . ID=id607;gbkey=repeat_region;gene=lfpB NC_008258.1 RefSeq region 3866879 3868209 . - . ID=id608;gbkey=mobile_element;gene=lfpB NC_008258.1 RefSeq gene 3867448 3867750 . + . ID=gene4140;Name=SFV_RS20805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20805 NC_008258.1 Protein Homology CDS 3867448 3867750 . + 0 ID=cds4043;Parent=gene4140;Dbxref=Genbank:WP_000336274.1;Name=WP_000336274.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000336274.1;transl_table=11 NC_008258.1 RefSeq gene 3867753 3868118 . - . ID=gene4141;Name=SFV_RS20810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20810;old_locus_tag=SFV_3776 NC_008258.1 Protein Homology CDS 3867753 3868118 . - 0 ID=cds4044;Parent=gene4141;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 3868264 3870786 . + . ID=gene4142;Name=SFV_RS20815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20815;old_locus_tag=SFV_3777 NC_008258.1 Protein Homology CDS 3868264 3870786 . + 0 ID=cds4045;Parent=gene4142;Dbxref=Genbank:WP_000989226.1;Name=WP_000989226.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_000989226.1;transl_table=11 NC_008258.1 RefSeq gene 3870797 3871870 . + . ID=gene4143;Name=SFV_RS20820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20820;old_locus_tag=SFV_3778 NC_008258.1 Protein Homology CDS 3870797 3871870 . + 0 ID=cds4046;Parent=gene4143;Dbxref=Genbank:WP_001046018.1;Name=WP_001046018.1;gbkey=CDS;product=fimbrial protein;protein_id=WP_001046018.1;transl_table=11 NC_008258.1 RefSeq gene 3872118 3873158 . + . ID=gene4144;Name=SFV_RS20825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20825;old_locus_tag=SFV_3779 NC_008258.1 Protein Homology CDS 3872118 3873158 . + 0 ID=cds4047;Parent=gene4144;Dbxref=Genbank:WP_000867148.1;Name=WP_000867148.1;gbkey=CDS;product=phosphate-binding protein;protein_id=WP_000867148.1;transl_table=11 NC_008258.1 RefSeq gene 3873245 3874204 . + . ID=gene4145;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=SFV_RS20830;old_locus_tag=SFV_3780 NC_008258.1 Protein Homology CDS 3873245 3874204 . + 0 ID=cds4048;Parent=gene4145;Dbxref=Genbank:WP_000741620.1;Name=WP_000741620.1;Note=part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions;gbkey=CDS;gene=pstC;product=phosphate ABC transporter permease;protein_id=WP_000741620.1;transl_table=11 NC_008258.1 RefSeq gene 3874204 3875094 . + . ID=gene4146;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=SFV_RS20835;old_locus_tag=SFV_3781 NC_008258.1 Protein Homology CDS 3874204 3875094 . + 0 ID=cds4049;Parent=gene4146;Dbxref=Genbank:WP_001251997.1;Name=WP_001251997.1;Note=Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions;gbkey=CDS;gene=pstA;product=phosphate transporter permease subunit PtsA;protein_id=WP_001251997.1;transl_table=11 NC_008258.1 RefSeq gene 3875186 3875959 . + . ID=gene4147;Name=SFV_RS20840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20840;old_locus_tag=SFV_3782 NC_008258.1 Protein Homology CDS 3875186 3875959 . + 0 ID=cds4050;Parent=gene4147;Dbxref=Genbank:WP_000063125.1;Name=WP_000063125.1;gbkey=CDS;product=phosphate import ATP-binding protein PstB;protein_id=WP_000063125.1;transl_table=11 NC_008258.1 RefSeq gene 3875974 3876699 . + . ID=gene4148;Name=SFV_RS20845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20845;old_locus_tag=SFV_3783 NC_008258.1 Protein Homology CDS 3875974 3876699 . + 0 ID=cds4051;Parent=gene4148;Dbxref=Genbank:WP_000377786.1;Name=WP_000377786.1;Note=regulates several genes involved in high affinity phosphate uptake%3B under conditions of high phosphate concentrations downregulates the PHO regulon;gbkey=CDS;product=phosphate-specific transport system accessory protein PhoU;protein_id=WP_000377786.1;transl_table=11 NC_008258.1 RefSeq gene 3876986 3877822 . + . ID=gene4149;Name=SFV_RS20850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20850;old_locus_tag=SFV_3784 NC_008258.1 Protein Homology CDS 3876986 3877822 . + 0 ID=cds4052;Parent=gene4149;Dbxref=Genbank:WP_005071737.1;Name=WP_005071737.1;Note=positive regulator of the beta-glucoside operon%3B transcriptional antiterminator;gbkey=CDS;product=cryptic beta-glucoside bgl operon antiterminator;protein_id=WP_005071737.1;transl_table=11 NC_008258.1 RefSeq gene 3877956 3879833 . + . ID=gene4150;Name=SFV_RS20855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20855;old_locus_tag=SFV_3785 NC_008258.1 Protein Homology CDS 3877956 3879833 . + 0 ID=cds4053;Parent=gene4150;Dbxref=Genbank:WP_000137305.1;Name=WP_000137305.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS beta-glucoside transporter subunit IIABC;protein_id=WP_000137305.1;transl_table=11 NC_008258.1 RefSeq gene 3879852 3881246 . + . ID=gene4151;Name=SFV_RS20860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20860;old_locus_tag=SFV_3786 NC_008258.1 Protein Homology CDS 3879852 3881246 . + 0 ID=cds4054;Parent=gene4151;Dbxref=Genbank:WP_000643221.1;Name=WP_000643221.1;gbkey=CDS;product=6-phospho-beta-glucosidase;protein_id=WP_000643221.1;transl_table=11 NC_008258.1 RefSeq gene 3881332 3882948 . + . ID=gene4152;Name=SFV_RS20865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20865;old_locus_tag=SFV_3787 NC_008258.1 Protein Homology CDS 3881332 3882948 . + 0 ID=cds4055;Parent=gene4152;Dbxref=Genbank:WP_000489864.1;Name=WP_000489864.1;gbkey=CDS;product=porin;protein_id=WP_000489864.1;transl_table=11 NC_008258.1 RefSeq gene 3882975 3884150 . + . ID=gene4153;Name=SFV_RS20870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20870;old_locus_tag=SFV_3788 NC_008258.1 Protein Homology CDS 3882975 3884150 . + 0 ID=cds4056;Parent=gene4153;Dbxref=Genbank:WP_005052068.1;Name=WP_005052068.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052068.1;transl_table=11 NC_008258.1 RefSeq gene 3884152 3884874 . + . ID=gene4154;Name=SFV_RS20875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20875;old_locus_tag=SFV_3789 NC_008258.1 Protein Homology CDS 3884152 3884874 . + 0 ID=cds4057;Parent=gene4154;Dbxref=Genbank:WP_000766898.1;Name=WP_000766898.1;gbkey=CDS;product=6-phosphogluconolactonase;protein_id=WP_000766898.1;transl_table=11 NC_008258.1 RefSeq gene 3884936 3885472 . - . ID=gene4155;Name=SFV_RS24530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24530;old_locus_tag=SFV_3790 NC_008258.1 Protein Homology CDS 3884936 3885472 . - 0 ID=cds4058;Parent=gene4155;Dbxref=Genbank:WP_045178171.1;Name=WP_045178171.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_045178171.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3885494 3887568 . + . ID=id609;gbkey=repeat_region NC_008258.1 RefSeq region 3885495 3886342 . + . ID=id610;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3885527 3886369 . - . ID=gene4156;Name=SFV_RS20885;end_range=3886369,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20885;old_locus_tag=SFV_3791;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3885527 3886369 . - 0 ID=cds4059;Parent=gene4156;end_range=3886369,.;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_except=(pos:complement(3886343..3886345)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq region 3886335 3887563 . + . ID=id611;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3886463 3886810 . - . ID=gene4157;Name=SFV_RS20890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20890;old_locus_tag=SFV_3793 NC_008258.1 Protein Homology CDS 3886463 3886810 . - 0 ID=cds4060;Parent=gene4157;Dbxref=Genbank:WP_000631709.1;Name=WP_000631709.1;gbkey=CDS;product=transposase;protein_id=WP_000631709.1;transl_table=11 NC_008258.1 RefSeq gene 3886807 3887481 . - . ID=gene4158;Name=SFV_RS20895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20895;old_locus_tag=SFV_3794 NC_008258.1 Protein Homology CDS 3886807 3887481 . - 0 ID=cds4061;Parent=gene4158;Dbxref=Genbank:WP_004967157.1;Name=WP_004967157.1;gbkey=CDS;product=transposase;protein_id=WP_004967157.1;transl_table=11 NC_008258.1 RefSeq gene 3887649 3888122 . - . ID=gene4159;Name=SFV_RS20900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20900;old_locus_tag=SFV_3795 NC_008258.1 Protein Homology CDS 3887649 3888122 . - 0 ID=cds4062;Parent=gene4159;Dbxref=Genbank:WP_000116772.1;Name=WP_000116772.1;Note=might be involved in hypersensitivity to nitrofurzone;gbkey=CDS;product=protein CbrB;protein_id=WP_000116772.1;transl_table=11 NC_008258.1 RefSeq gene 3888189 3888845 . - . ID=gene4160;Name=SFV_RS20905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20905;old_locus_tag=SFV_3796 NC_008258.1 Protein Homology CDS 3888189 3888845 . - 0 ID=cds4063;Parent=gene4160;Dbxref=Genbank:WP_000086484.1;Name=WP_000086484.1;Note=YieH%3B catalyzes the dephosphorylation of phosphoenolpyruvate%2C AMP and p-nitrophenyl phosphate%3B purine and pyrimidine nucleotides are secondary substrates%3B member of the haloacid dehalogenase-like hydrolases superfamily;gbkey=CDS;product=6-phosphogluconate phosphatase;protein_id=WP_000086484.1;transl_table=11 NC_008258.1 RefSeq gene 3889010 3890347 . + . ID=gene4161;Name=SFV_RS20910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20910;old_locus_tag=SFV_3797 NC_008258.1 Protein Homology CDS 3889010 3890347 . + 0 ID=cds4064;Parent=gene4161;Dbxref=Genbank:WP_005081549.1;Name=WP_005081549.1;Note=involved in the transport or adenine;gbkey=CDS;product=adenine permease;protein_id=WP_005081549.1;transl_table=11 NC_008258.1 RefSeq gene 3890401 3890967 . - . ID=gene4162;Name=SFV_RS20915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20915;old_locus_tag=SFV_3798 NC_008258.1 Protein Homology CDS 3890401 3890967 . - 0 ID=cds4065;Parent=gene4162;Dbxref=Genbank:WP_001291268.1;Name=WP_001291268.1;gbkey=CDS;product=chromate reductase;protein_id=WP_001291268.1;transl_table=11 NC_008258.1 RefSeq gene 3890989 3891738 . - . ID=gene4163;Name=SFV_RS20920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20920;old_locus_tag=SFV_3799 NC_008258.1 Protein Homology CDS 3890989 3891738 . - 0 ID=cds4066;Parent=gene4163;Dbxref=Genbank:WP_000190670.1;Name=WP_000190670.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000190670.1;transl_table=11 NC_008258.1 RefSeq gene 3891895 3892206 . - . ID=gene4164;Name=SFV_RS20925;end_range=3892206,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20925;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3891895 3892206 . - 0 ID=cds4067;Parent=gene4164;Note=Involved in anaerobic NO protection;end_range=3892206,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transcriptional regulator;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3892207 3893474 . + . ID=id612;gbkey=repeat_region NC_008258.1 RefSeq region 3892209 3893472 . + . ID=id613;gbkey=mobile_element NC_008258.1 RefSeq gene 3892273 3892575 . + . ID=gene4165;Name=SFV_RS20930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20930;old_locus_tag=SFV_3800 NC_008258.1 Protein Homology CDS 3892273 3892575 . + 0 ID=cds4068;Parent=gene4165;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 3892611 3893429 . + . ID=gene4166;Name=SFV_RS20935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20935;old_locus_tag=SFV_3801 NC_008258.1 Protein Homology CDS 3892611 3893429 . + 0 ID=cds4069;Parent=gene4166;Dbxref=Genbank:WP_000336672.1;Name=WP_000336672.1;gbkey=CDS;product=transposase;protein_id=WP_000336672.1;transl_table=11 NC_008258.1 RefSeq gene 3893474 3894121 . - . ID=gene4167;Name=SFV_RS20940;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS20940;partial=true;pseudo=true;start_range=.,3893474 NC_008258.1 Protein Homology CDS 3893474 3894121 . - 0 ID=cds4070;Parent=gene4167;Note=Involved in anaerobic NO protection;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transcriptional regulator;pseudo=true;start_range=.,3893474;transl_table=11 NC_008258.1 RefSeq gene 3894096 3895271 . - . ID=gene4168;Name=SFV_RS20945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20945;old_locus_tag=SFV_3803 NC_008258.1 Protein Homology CDS 3894096 3895271 . - 0 ID=cds4071;Parent=gene4168;Dbxref=Genbank:WP_000085961.1;Name=WP_000085961.1;Note=Confers resistance to chloramphenicol;gbkey=CDS;product=multidrug resistance protein MdtL;protein_id=WP_000085961.1;transl_table=11 NC_008258.1 RefSeq gene 3895403 3896650 . - . ID=gene4169;Name=SFV_RS20950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20950;old_locus_tag=SFV_3804 NC_008258.1 Protein Homology CDS 3895403 3896650 . - 0 ID=cds4072;Parent=gene4169;Dbxref=Genbank:WP_000131907.1;Name=WP_000131907.1;Note=tryptophan transporter of high affinity;gbkey=CDS;product=low affinity tryptophan permease;protein_id=WP_000131907.1;transl_table=11 NC_008258.1 RefSeq gene 3896741 3898156 . - . ID=gene4170;Name=tnaA;gbkey=Gene;gene=tnaA;gene_biotype=protein_coding;locus_tag=SFV_RS20955;old_locus_tag=SFV_3805 NC_008258.1 Protein Homology CDS 3896741 3898156 . - 0 ID=cds4073;Parent=gene4170;Dbxref=Genbank:WP_001295247.1;Name=WP_001295247.1;Note=tryptophan indole-lyase%3B catalyzes the formation of indole and pyruvate from tryptophan%3B also has xysteine desulfhydrase activity;gbkey=CDS;gene=tnaA;product=tryptophanase;protein_id=WP_001295247.1;transl_table=11 NC_008258.1 RefSeq gene 3898377 3898451 . - . ID=gene4171;Name=SFV_RS20960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20960 NC_008258.1 Protein Homology CDS 3898377 3898451 . - 0 ID=cds4074;Parent=gene4171;Dbxref=Genbank:WP_011069570.1;Name=WP_011069570.1;gbkey=CDS;product=tryptophanase leader peptide;protein_id=WP_011069570.1;transl_table=11 NC_008258.1 RefSeq gene 3898693 3900057 . - . ID=gene4172;Name=trmE;gbkey=Gene;gene=trmE;gene_biotype=protein_coding;gene_synonym=mnmE,thdF;locus_tag=SFV_RS20965;old_locus_tag=SFV_3806 NC_008258.1 Protein Homology CDS 3898693 3900057 . - 0 ID=cds4075;Parent=gene4172;Dbxref=Genbank:WP_001282349.1;Name=WP_001282349.1;Note=in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine%2C which is found in the wobble position of some tRNAs and affects ribosomal frameshifting%3B shows potassium-dependent dimerization and GTP hydrolysis%3B also involved in regulation of glutamate-dependent acid resistance and activation of gadE;gbkey=CDS;gene=trmE;product=tRNA modification GTPase MnmE;protein_id=WP_001282349.1;transl_table=11 NC_008258.1 RefSeq gene 3900163 3901809 . - . ID=gene4173;Name=SFV_RS20970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20970;old_locus_tag=SFV_3807 NC_008258.1 Protein Homology CDS 3900163 3901809 . - 0 ID=cds4076;Parent=gene4173;Dbxref=Genbank:WP_000378252.1;Name=WP_000378252.1;Note=functions to insert inner membrane proteins into the IM in Escherichia coli%3B interacts with transmembrane segments%3B functions in both Sec-dependent and -independent membrane insertion%3B similar to Oxa1p in mitochondria;gbkey=CDS;product=protein translocase component YidC;protein_id=WP_000378252.1;transl_table=11 NC_008258.1 RefSeq gene 3901812 3902069 . - . ID=gene4174;Name=SFV_RS20975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20975 NC_008258.1 Protein Homology CDS 3901812 3902069 . - 0 ID=cds4077;Parent=gene4174;Dbxref=Genbank:WP_001307474.1;Name=WP_001307474.1;gbkey=CDS;product=membrane protein insertion efficiency factor YidD;protein_id=WP_001307474.1;transl_table=11 NC_008258.1 RefSeq gene 3902033 3902392 . - . ID=gene4175;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=SFV_RS20980;old_locus_tag=SFV_3808 NC_008258.1 Protein Homology CDS 3902033 3902392 . - 0 ID=cds4078;Parent=gene4175;Dbxref=Genbank:WP_000239730.1;Name=WP_000239730.1;Note=protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus%3B this enzyme also cleaves other RNA substrates;gbkey=CDS;gene=rnpA;product=ribonuclease P protein component;protein_id=WP_000239730.1;transl_table=11 NC_008258.1 RefSeq gene 3902409 3902549 . - . ID=gene4176;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=SFV_RS20985;old_locus_tag=SFV_3809 NC_008258.1 Protein Homology CDS 3902409 3902549 . - 0 ID=cds4079;Parent=gene4176;Dbxref=Genbank:WP_000831330.1;Name=WP_000831330.1;Note=in Escherichia coli transcription of this gene is enhanced by polyamines;gbkey=CDS;gene=rpmH;product=50S ribosomal protein L34;protein_id=WP_000831330.1;transl_table=11 NC_008258.1 RefSeq gene 3903156 3904556 . + . ID=gene4177;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=pseudogene;locus_tag=SFV_RS20990;old_locus_tag=SFV_3810;pseudo=true NC_008258.1 Protein Homology CDS 3903156 3904556 . + 0 ID=cds4080;Parent=gene4177;Note=binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication%3B can also affect transcription of multiple genes including itself.;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=dnaA;product=chromosomal replication initiation protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3904561 3905661 . + . ID=gene4178;Name=SFV_RS20995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS20995;old_locus_tag=SFV_3811 NC_008258.1 Protein Homology CDS 3904561 3905661 . + 0 ID=cds4081;Parent=gene4178;Dbxref=Genbank:WP_000673462.1;Name=WP_000673462.1;Note=binds the polymerase to DNA and acts as a sliding clamp;gbkey=CDS;product=DNA polymerase III subunit beta;protein_id=WP_000673462.1;transl_table=11 NC_008258.1 RefSeq gene 3905661 3906734 . + . ID=gene4179;Name=recF;gbkey=Gene;gene=recF;gene_biotype=protein_coding;locus_tag=SFV_RS21000;old_locus_tag=SFV_3812 NC_008258.1 Protein Homology CDS 3905661 3906734 . + 0 ID=cds4082;Parent=gene4179;Dbxref=Genbank:WP_000060095.1;Name=WP_000060095.1;Note=Required for DNA replication%3B binds preferentially to single-stranded%2C linear DNA;gbkey=CDS;gene=recF;product=DNA recombination protein RecF;protein_id=WP_000060095.1;transl_table=11 NC_008258.1 RefSeq gene 3906763 3909177 . + . ID=gene4180;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=SFV_RS21005;old_locus_tag=SFV_3813 NC_008258.1 Protein Homology CDS 3906763 3909177 . + 0 ID=cds4083;Parent=gene4180;Dbxref=Genbank:WP_000072067.1;Name=WP_000072067.1;Note=negatively supercoils closed circular double-stranded DNA;gbkey=CDS;gene=gyrB;product=DNA gyrase subunit B;protein_id=WP_000072067.1;transl_table=11 NC_008258.1 RefSeq gene 3909197 3909397 . + . ID=gene4181;Name=SFV_RS21010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21010 NC_008258.1 Protein Homology CDS 3909197 3909397 . + 0 ID=cds4084;Parent=gene4181;Dbxref=Genbank:WP_001443519.1;Name=WP_001443519.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001443519.1;transl_table=11 NC_008258.1 RefSeq gene 3909417 3909815 . + . ID=gene4182;Name=SFV_RS21015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21015;old_locus_tag=SFV_3814 NC_008258.1 Protein Homology CDS 3909417 3909815 . + 0 ID=cds4085;Parent=gene4182;Dbxref=Genbank:WP_005052034.1;Name=WP_005052034.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052034.1;transl_table=11 NC_008258.1 RefSeq gene 3909929 3910741 . + . ID=gene4183;Name=SFV_RS21020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21020;old_locus_tag=SFV_3815 NC_008258.1 Protein Homology CDS 3909929 3910741 . + 0 ID=cds4086;Parent=gene4183;Dbxref=Genbank:WP_000985556.1;Name=WP_000985556.1;Note=YidA%3B catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate)%2C mannose 1-phosphate and p-nitrophenyl phosphate%3B hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form%3B member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins;gbkey=CDS;product=sugar phosphate phosphatase;protein_id=WP_000985556.1;transl_table=11 NC_008258.1 RefSeq gene 3910787 3911443 . - . ID=gene4184;Name=SFV_RS21025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21025;old_locus_tag=SFV_3816 NC_008258.1 Protein Homology CDS 3910787 3911443 . - 0 ID=cds4087;Parent=gene4184;Dbxref=Genbank:WP_000772933.1;Name=WP_000772933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000772933.1;transl_table=11 NC_008258.1 RefSeq gene 3911721 3912410 . + . ID=gene4185;Name=SFV_RS21030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21030 NC_008258.1 Protein Homology CDS 3911721 3912410 . + 0 ID=cds4088;Parent=gene4185;Dbxref=Genbank:WP_000174312.1;Name=WP_000174312.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000174312.1;transl_table=11 NC_008258.1 RefSeq gene 3912407 3913285 . + . ID=gene4186;Name=SFV_RS21035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21035;old_locus_tag=SFV_3818 NC_008258.1 Protein Homology CDS 3912407 3913285 . + 0 ID=cds4089;Parent=gene4186;Dbxref=Genbank:WP_000127104.1;Name=WP_000127104.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-galactonate 6-phosphate from 2-dehydro-3-deoxy-D-galactonate;gbkey=CDS;product=2-oxo-3-deoxygalactonate kinase;protein_id=WP_000127104.1;transl_table=11 NC_008258.1 RefSeq gene 3913269 3913886 . + . ID=gene4187;Name=SFV_RS21040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21040 NC_008258.1 Protein Homology CDS 3913269 3913886 . + 0 ID=cds4090;Parent=gene4187;Dbxref=Genbank:WP_001198719.1;Name=WP_001198719.1;Note=catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate%3B functions in galactonate metabolism;gbkey=CDS;product=2-dehydro-3-deoxy-6-phosphogalactonate aldolase;protein_id=WP_001198719.1;transl_table=11 NC_008258.1 RefSeq gene 3913883 3914812 . + . ID=gene4188;Name=SFV_RS21045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21045 NC_008258.1 Protein Homology CDS 3913883 3914812 . + 0 ID=cds4091;Parent=gene4188;Dbxref=Genbank:WP_000704996.1;Name=WP_000704996.1;gbkey=CDS;product=galactonate dehydratase;protein_id=WP_000704996.1;transl_table=11 NC_008258.1 RefSeq gene 3914819 3915031 . + . ID=gene4189;Name=SFV_RS21050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21050 NC_008258.1 Protein Homology CDS 3914819 3915031 . + 0 ID=cds4092;Parent=gene4189;Dbxref=Genbank:WP_000511257.1;Name=WP_000511257.1;gbkey=CDS;product=galactonate dehydratase;protein_id=WP_000511257.1;transl_table=11 NC_008258.1 RefSeq gene 3915151 3916443 . + . ID=gene4190;Name=SFV_RS21055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21055;old_locus_tag=SFV_3820 NC_008258.1 Protein Homology CDS 3915151 3916443 . + 0 ID=cds4093;Parent=gene4190;Dbxref=Genbank:WP_005052032.1;Name=WP_005052032.1;gbkey=CDS;product=D-galactonate transporter;protein_id=WP_005052032.1;transl_table=11 NC_008258.1 RefSeq gene 3916404 3917504 . - . ID=gene4191;Name=SFV_RS21060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21060;old_locus_tag=SFV_3821 NC_008258.1 Protein Homology CDS 3916404 3917504 . - 0 ID=cds4094;Parent=gene4191;Dbxref=Genbank:WP_005106049.1;Name=WP_005106049.1;Note=FAD/NAD(P)-binding domain;gbkey=CDS;product=protein CbrA;protein_id=WP_005106049.1;transl_table=11 NC_008258.1 RefSeq gene 3917605 3918825 . + . ID=gene4192;Name=SFV_RS21065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21065;old_locus_tag=SFV_3822 NC_008258.1 Protein Homology CDS 3917605 3918825 . + 0 ID=cds4095;Parent=gene4192;Dbxref=Genbank:WP_005065225.1;Name=WP_005065225.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005065225.1;transl_table=11 NC_008258.1 RefSeq gene 3918827 3919087 . - . ID=gene4193;Name=SFV_RS21070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21070 NC_008258.1 Protein Homology CDS 3918827 3919087 . - 0 ID=cds4096;Parent=gene4193;Dbxref=Genbank:WP_000019930.1;Name=WP_000019930.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000019930.1;transl_table=11 NC_008258.1 RefSeq gene 3919464 3919877 . + . ID=gene4194;Name=SFV_RS21075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21075;old_locus_tag=SFV_3824 NC_008258.1 Protein Homology CDS 3919464 3919877 . + 0 ID=cds4097;Parent=gene4194;Dbxref=Genbank:WP_001243437.1;Name=WP_001243437.1;Note=with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress;gbkey=CDS;product=heat-shock protein IbpA;protein_id=WP_001243437.1;transl_table=11 NC_008258.1 RefSeq gene 3919989 3920417 . + . ID=gene4195;Name=SFV_RS21080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21080;old_locus_tag=SFV_3825 NC_008258.1 Protein Homology CDS 3919989 3920417 . + 0 ID=cds4098;Parent=gene4195;Dbxref=Genbank:WP_001243431.1;Name=WP_001243431.1;Note=16 kDa heat shock protein B%3B associates with aggregated proteins%2C together with ibpA%2C to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress%3B ATP-independent;gbkey=CDS;product=heat-shock protein IbpB;protein_id=WP_001243431.1;transl_table=11 NC_008258.1 RefSeq gene 3920422 3920571 . - . ID=gene4196;Name=SFV_RS21085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21085 NC_008258.1 Protein Homology CDS 3920422 3920571 . - 0 ID=cds4099;Parent=gene4196;Dbxref=Genbank:WP_001300956.1;Name=WP_001300956.1;gbkey=CDS;product=peptide ABC transporter ATP-binding protein;protein_id=WP_001300956.1;transl_table=11 NC_008258.1 RefSeq gene 3920613 3922274 . + . ID=gene4197;Name=SFV_RS21090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21090;old_locus_tag=SFV_3826 NC_008258.1 Protein Homology CDS 3920613 3922274 . + 0 ID=cds4100;Parent=gene4197;Dbxref=Genbank:WP_001279744.1;Name=WP_001279744.1;gbkey=CDS;product=transporter;protein_id=WP_001279744.1;transl_table=11 NC_008258.1 RefSeq gene 3922313 3922987 . - . ID=gene4198;Name=SFV_RS21095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21095;old_locus_tag=SFV_3827 NC_008258.1 Protein Homology CDS 3922313 3922987 . - 0 ID=cds4101;Parent=gene4198;Dbxref=Genbank:WP_005106050.1;Name=WP_005106050.1;gbkey=CDS;product=GntR family transcriptional regulator;protein_id=WP_005106050.1;transl_table=11 NC_008258.1 RefSeq gene 3923282 3924895 . + . ID=gene4199;Name=SFV_RS21100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21100;old_locus_tag=SFV_3828 NC_008258.1 Protein Homology CDS 3923282 3924895 . + 0 ID=cds4102;Parent=gene4199;Dbxref=Genbank:WP_000945994.1;Name=WP_000945994.1;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=PTS alpha-glucoside transporter subunit IICB;protein_id=WP_000945994.1;transl_table=11 NC_008258.1 RefSeq gene 3924895 3925533 . + . ID=gene4200;Name=SFV_RS21105;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21105;pseudo=true NC_008258.1 Protein Homology CDS 3924895 3925533 . + 0 ID=cds4103;Parent=gene4200;gbkey=CDS;product=inactive 6-phospho-alpha-glucosidase;pseudo=true;transl_except=(pos:3925315..3925317%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 3925706 3926599 . - . ID=gene4201;Name=SFV_RS21110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21110;old_locus_tag=SFV_3830 NC_008258.1 Protein Homology CDS 3925706 3926599 . - 0 ID=cds4104;Parent=gene4201;Dbxref=Genbank:WP_005106052.1;Name=WP_005106052.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_005106052.1;transl_table=11 NC_008258.1 RefSeq gene 3926766 3928481 . + . ID=gene4202;Name=SFV_RS21115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21115;old_locus_tag=SFV_3831 NC_008258.1 Protein Homology CDS 3926766 3928481 . + 0 ID=cds4105;Parent=gene4202;Dbxref=Genbank:WP_001087134.1;Name=WP_001087134.1;Note=uncharacterized member of the SSS superfamily of sodium-dependent solute transporters%3B unknown function;gbkey=CDS;product=transporter;protein_id=WP_001087134.1;transl_table=11 NC_008258.1 RefSeq gene 3928516 3929958 . + . ID=gene4203;Name=SFV_RS21120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21120;old_locus_tag=SFV_3832 NC_008258.1 Protein Homology CDS 3928516 3929958 . + 0 ID=cds4106;Parent=gene4203;Dbxref=Genbank:WP_005106053.1;Name=WP_005106053.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106053.1;transl_table=11 NC_008258.1 RefSeq gene 3930005 3930418 . - . ID=gene4204;Name=SFV_RS21125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21125;old_locus_tag=SFV_3833 NC_008258.1 Protein Homology CDS 3930005 3930418 . - 0 ID=cds4107;Parent=gene4204;Dbxref=Genbank:WP_000511292.1;Name=WP_000511292.1;gbkey=CDS;product=membrane protein;protein_id=WP_000511292.1;transl_table=11 NC_008258.1 RefSeq gene 3930527 3930874 . + . ID=gene4205;Name=SFV_RS21130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21130;old_locus_tag=SFV_3834 NC_008258.1 Protein Homology CDS 3930527 3930874 . + 0 ID=cds4108;Parent=gene4205;Dbxref=Genbank:WP_000703959.1;Name=WP_000703959.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000703959.1;transl_table=11 NC_008258.1 RefSeq gene 3930864 3931226 . + . ID=gene4206;Name=SFV_RS21135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21135;old_locus_tag=SFV_3835 NC_008258.1 Protein Homology CDS 3930864 3931226 . + 0 ID=cds4109;Parent=gene4206;Dbxref=Genbank:WP_001113432.1;Name=WP_001113432.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001113432.1;transl_table=11 NC_008258.1 RefSeq gene 3931223 3931720 . + . ID=gene4207;Name=SFV_RS21140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21140;old_locus_tag=SFV_3836 NC_008258.1 Protein Homology CDS 3931223 3931720 . + 0 ID=cds4110;Parent=gene4207;Dbxref=Genbank:WP_000148063.1;Name=WP_000148063.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000148063.1;transl_table=11 NC_008258.1 RefSeq gene 3931728 3932912 . - . ID=gene4208;Name=emrD;gbkey=Gene;gene=emrD;gene_biotype=protein_coding;locus_tag=SFV_RS21145;old_locus_tag=SFV_3837 NC_008258.1 Protein Homology CDS 3931728 3932912 . - 0 ID=cds4111;Parent=gene4208;Dbxref=Genbank:WP_000828746.1;Name=WP_000828746.1;Note=multidrug efflux protein involved in adaptation to low energy shock;gbkey=CDS;gene=emrD;product=multidrug resistance protein D;protein_id=WP_000828746.1;transl_table=11 NC_008258.1 RefSeq gene 3933192 3933281 . - . ID=gene4209;Name=SFV_RS21150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21150 NC_008258.1 Protein Homology CDS 3933192 3933281 . - 0 ID=cds4112;Parent=gene4209;Dbxref=Genbank:WP_000060506.1;Name=WP_000060506.1;gbkey=CDS;product=toxic peptide TisB;protein_id=WP_000060506.1;transl_table=11 NC_008258.1 RefSeq gene 3933414 3933572 . - . ID=gene4210;Name=SFV_RS21155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21155 NC_008258.1 Protein Homology CDS 3933414 3933572 . - 0 ID=cds4113;Parent=gene4210;Dbxref=Genbank:WP_032157196.1;Name=WP_032157196.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032157196.1;transl_table=11 NC_008258.1 RefSeq gene 3933569 3933859 . - . ID=gene4211;Name=SFV_RS21160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21160 NC_008258.1 Protein Homology CDS 3933569 3933859 . - 0 ID=cds4114;Parent=gene4211;Dbxref=Genbank:WP_000454294.1;Name=WP_000454294.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000454294.1;transl_table=11 NC_008258.1 RefSeq gene 3933846 3933944 . + . ID=gene4212;Name=SFV_RS21165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21165 NC_008258.1 Protein Homology CDS 3933846 3933944 . + 0 ID=cds4115;Parent=gene4212;Dbxref=Genbank:WP_001312198.1;Name=WP_001312198.1;gbkey=CDS;product=IlvB leader peptide;protein_id=WP_001312198.1;transl_table=11 NC_008258.1 RefSeq gene 3934050 3935738 . + . ID=gene4213;Name=SFV_RS21170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21170;old_locus_tag=SFV_3838 NC_008258.1 Protein Homology CDS 3934050 3935738 . + 0 ID=cds4116;Parent=gene4213;Dbxref=Genbank:WP_000168490.1;Name=WP_000168490.1;gbkey=CDS;product=acetolactate synthase;protein_id=WP_000168490.1;transl_table=11 NC_008258.1 RefSeq gene 3935742 3936032 . + . ID=gene4214;Name=SFV_RS21175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21175;old_locus_tag=SFV_3839 NC_008258.1 Protein Homology CDS 3935742 3936032 . + 0 ID=cds4117;Parent=gene4214;Dbxref=Genbank:WP_001181711.1;Name=WP_001181711.1;Note=with IlvB catalyzes the formation of 2-acetolactate from pyruvate%2C the small subunit is required for full activity and valine sensitivity%3B E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates%2C valine sensitivity and affinity for cofactors%3B also known as acetolactate synthase small subunit;gbkey=CDS;product=acetolactate synthase;protein_id=WP_001181711.1;transl_table=11 NC_008258.1 RefSeq gene 3936107 3936697 . + . ID=gene4215;Name=SFV_RS21180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21180;old_locus_tag=SFV_3840 NC_008258.1 Protein Homology CDS 3936107 3936697 . + 0 ID=cds4118;Parent=gene4215;Dbxref=Genbank:WP_000633668.1;Name=WP_000633668.1;Note=response regulator in two-component regulatory system wtih UhpB%3B phosphorylated UhpA is a positive activator uhpT%2C a hexose phosphates transporter;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000633668.1;transl_table=11 NC_008258.1 RefSeq gene 3936697 3938199 . + . ID=gene4216;Name=SFV_RS21185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21185;old_locus_tag=SFV_3841 NC_008258.1 Protein Homology CDS 3936697 3938199 . + 0 ID=cds4119;Parent=gene4216;Dbxref=Genbank:WP_005052000.1;Name=WP_005052000.1;Note=Member of the two-component regulatory system UhpB/UhpA involved in the regulation of the uptake of hexose ph;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_005052000.1;transl_table=11 NC_008258.1 RefSeq gene 3938209 3939528 . + . ID=gene4217;Name=SFV_RS21190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21190;old_locus_tag=SFV_3842 NC_008258.1 Protein Homology CDS 3938209 3939528 . + 0 ID=cds4120;Parent=gene4217;Dbxref=Genbank:WP_005051998.1;Name=WP_005051998.1;Note=membrane protein regulates uhpT expression;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051998.1;transl_table=11 NC_008258.1 RefSeq gene 3939666 3941057 . + . ID=gene4218;Name=uhpT;gbkey=Gene;gene=uhpT;gene_biotype=protein_coding;locus_tag=SFV_RS21195;old_locus_tag=SFV_3843 NC_008258.1 Protein Homology CDS 3939666 3941057 . + 0 ID=cds4121;Parent=gene4218;Dbxref=Genbank:WP_000879194.1;Name=WP_000879194.1;Note=cytoplasmic membrane protein that functions as a monomer%3B catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate;gbkey=CDS;gene=uhpT;product=hexose phosphate transporter;protein_id=WP_000879194.1;transl_table=11 NC_008258.1 RefSeq gene 3941103 3942869 . - . ID=gene4219;Name=SFV_RS21200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21200;old_locus_tag=SFV_3844 NC_008258.1 Protein Homology CDS 3941103 3942869 . - 0 ID=cds4122;Parent=gene4219;Dbxref=Genbank:WP_001065672.1;Name=WP_001065672.1;Note=catalyzes the formation of hypoxanthine from adenine%3B in E. coli this activity has been detected in mutant strains but not in wild type;gbkey=CDS;product=adenine deaminase;protein_id=WP_001065672.1;transl_table=11 NC_008258.1 RefSeq gene 3942966 3944378 . + . ID=gene4220;Name=SFV_RS21205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21205;old_locus_tag=SFV_3845 NC_008258.1 Protein Homology CDS 3942966 3944378 . + 0 ID=cds4123;Parent=gene4220;Dbxref=Genbank:WP_000584148.1;Name=WP_000584148.1;Note=involved in the transport or adenine;gbkey=CDS;product=adenine permease;protein_id=WP_000584148.1;transl_table=11 NC_008258.1 RefSeq gene 3944431 3944883 . + . ID=gene4221;Name=SFV_RS21210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21210;old_locus_tag=SFV_3846 NC_008258.1 Protein Homology CDS 3944431 3944883 . + 0 ID=cds4124;Parent=gene4221;Dbxref=Genbank:WP_005051995.1;Name=WP_005051995.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005051995.1;transl_table=11 NC_008258.1 RefSeq gene 3945094 3946284 . + . ID=gene4222;Name=nepI;gbkey=Gene;gene=nepI;gene_biotype=protein_coding;gene_synonym=yicM;locus_tag=SFV_RS21215;old_locus_tag=SFV_3847 NC_008258.1 Protein Homology CDS 3945094 3946284 . + 0 ID=cds4125;Parent=gene4222;Dbxref=Genbank:WP_001288549.1;Name=WP_001288549.1;Note=experimental results in Escherichia coli suggest that this gene encodes an inosine export protein%3B member of major facilitator superfamily%3B MFS;gbkey=CDS;gene=nepI;product=purine ribonucleoside efflux pump NepI;protein_id=WP_001288549.1;transl_table=11 NC_008258.1 RefSeq gene 3946325 3946618 . - . ID=gene4223;Name=SFV_RS21220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21220 NC_008258.1 Protein Homology CDS 3946325 3946618 . - 0 ID=cds4126;Parent=gene4223;Dbxref=Genbank:WP_000805509.1;Name=WP_000805509.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000805509.1;transl_table=11 NC_008258.1 RefSeq gene 3946623 3946742 . - . ID=gene4224;Name=SFV_RS21225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21225 NC_008258.1 Protein Homology CDS 3946623 3946742 . - 0 ID=cds4127;Parent=gene4224;Dbxref=Genbank:WP_000456043.1;Name=WP_000456043.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000456043.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3946806 3948073 . + . ID=id614;gbkey=repeat_region NC_008258.1 RefSeq region 3946809 3948072 . + . ID=id615;gbkey=mobile_element NC_008258.1 RefSeq gene 3946873 3947175 . + . ID=gene4225;Name=SFV_RS21230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21230;old_locus_tag=SFV_3848 NC_008258.1 Protein Homology CDS 3946873 3947175 . + 0 ID=cds4128;Parent=gene4225;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 3947316 3948029 . + . ID=gene4226;Name=SFV_RS21235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21235;old_locus_tag=SFV_3849 NC_008258.1 Protein Homology CDS 3947316 3948029 . + 0 ID=cds4129;Parent=gene4226;Dbxref=Genbank:WP_000940368.1;Name=WP_000940368.1;gbkey=CDS;product=transposase;protein_id=WP_000940368.1;transl_table=11 NC_008258.1 RefSeq gene 3948103 3948300 . + . ID=gene4227;Name=SFV_RS21240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21240 NC_008258.1 Protein Homology CDS 3948103 3948300 . + 0 ID=cds4130;Parent=gene4227;Dbxref=Genbank:WP_044024175.1;Name=WP_044024175.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024175.1;transl_table=11 NC_008258.1 RefSeq gene 3948286 3950484 . - . ID=gene4228;Name=SFV_RS21245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21245;old_locus_tag=SFV_3850 NC_008258.1 Protein Homology CDS 3948286 3950484 . - 0 ID=cds4131;Parent=gene4228;Dbxref=Genbank:WP_000984719.1;Name=WP_000984719.1;gbkey=CDS;product=ligand-gated channel protein;protein_id=WP_000984719.1;transl_table=11 NC_008258.1 RefSeq gene 3950487 3951824 . - . ID=gene4229;Name=SFV_RS21250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21250;old_locus_tag=SFV_3851 NC_008258.1 Protein Homology CDS 3950487 3951824 . - 0 ID=cds4132;Parent=gene4229;Dbxref=Genbank:WP_000750135.1;Name=WP_000750135.1;gbkey=CDS;product=lysine 6-monooxygenase;protein_id=WP_000750135.1;transl_table=11 NC_008258.1 RefSeq gene 3951821 3953563 . - . ID=gene4230;Name=SFV_RS21255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21255;old_locus_tag=SFV_3852 NC_008258.1 Protein Homology CDS 3951821 3953563 . - 0 ID=cds4133;Parent=gene4230;Dbxref=Genbank:WP_001015713.1;Name=WP_001015713.1;gbkey=CDS;product=aerobactin synthase IucC;protein_id=WP_001015713.1;transl_table=11 NC_008258.1 RefSeq gene 3953563 3954510 . - . ID=gene4231;Name=SFV_RS21260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21260;old_locus_tag=SFV_3853 NC_008258.1 Protein Homology CDS 3953563 3954510 . - 0 ID=cds4134;Parent=gene4231;Dbxref=Genbank:WP_001287501.1;Name=WP_001287501.1;gbkey=CDS;product=N(6)-hydroxylysine O-acetyltransferase;protein_id=WP_001287501.1;transl_table=11 NC_008258.1 RefSeq gene 3954511 3956235 . - . ID=gene4232;Name=SFV_RS21265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21265;old_locus_tag=SFV_3854 NC_008258.1 Protein Homology CDS 3954511 3956235 . - 0 ID=cds4135;Parent=gene4232;Dbxref=Genbank:WP_001403387.1;Name=WP_001403387.1;gbkey=CDS;product=aerobactin synthase IucA;protein_id=WP_001403387.1;transl_table=11 NC_008258.1 RefSeq gene 3956371 3957564 . + . ID=gene4233;Name=SFV_RS21270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21270;old_locus_tag=SFV_3855 NC_008258.1 Protein Homology CDS 3956371 3957564 . + 0 ID=cds4136;Parent=gene4233;Dbxref=Genbank:WP_000074477.1;Name=WP_000074477.1;gbkey=CDS;product=MFS transporter;protein_id=WP_000074477.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3958308 3959081 . + . ID=id616;gbkey=repeat_region NC_008258.1 RefSeq region 3958311 3959078 . + . ID=id617;gbkey=mobile_element NC_008258.1 RefSeq gene 3958560 3959063 . + . ID=gene4234;Name=SFV_RS21275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21275;old_locus_tag=SFV_3857 NC_008258.1 Protein Homology CDS 3958560 3959063 . + 0 ID=cds4137;Parent=gene4234;Dbxref=Genbank:WP_011069565.1;Name=WP_011069565.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_011069565.1;transl_table=11 NC_008258.1 RefSeq gene 3959585 3959983 . - . ID=gene4235;Name=SFV_RS21280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21280 NC_008258.1 Protein Homology CDS 3959585 3959983 . - 0 ID=cds4138;Parent=gene4235;Dbxref=Genbank:WP_011069564.1;Name=WP_011069564.1;gbkey=CDS;product=colV-immunity protein;protein_id=WP_011069564.1;transl_table=11 NC_008258.1 RefSeq gene 3960252 3960380 . - . ID=gene4236;Name=SFV_RS21285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21285 NC_008258.1 Protein Homology CDS 3960252 3960380 . - 0 ID=cds4139;Parent=gene4236;Dbxref=Genbank:WP_001304210.1;Name=WP_001304210.1;gbkey=CDS;product=transposase;protein_id=WP_001304210.1;transl_table=11 NC_008258.1 RefSeq gene 3960741 3960935 . - . ID=gene4237;Name=SFV_RS21290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21290 NC_008258.1 Protein Homology CDS 3960741 3960935 . - 0 ID=cds4140;Parent=gene4237;Dbxref=Genbank:WP_001004881.1;Name=WP_001004881.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001004881.1;transl_table=11 NC_008258.1 RefSeq gene 3961015 3961239 . + . ID=gene4238;Name=SFV_RS21295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21295 NC_008258.1 Protein Homology CDS 3961015 3961239 . + 0 ID=cds4141;Parent=gene4238;Dbxref=Genbank:WP_001303897.1;Name=WP_001303897.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303897.1;transl_table=11 NC_008258.1 RefSeq gene 3961255 3961443 . + . ID=gene4239;Name=SFV_RS21300;end_range=3961443,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21300;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 3961255 3961443 . + 0 ID=cds4142;Parent=gene4239;end_range=3961443,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 3961442 3962776 . + . ID=id618;gbkey=repeat_region NC_008258.1 RefSeq region 3961444 3962774 . + . ID=id619;gbkey=mobile_element NC_008258.1 RefSeq gene 3961535 3961900 . + . ID=gene4240;Name=SFV_RS21305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21305;old_locus_tag=SFV_3858 NC_008258.1 Protein Homology CDS 3961535 3961900 . + 0 ID=cds4143;Parent=gene4240;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 3961858 3962763 . + . ID=gene4241;Name=SFV_RS21310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21310;old_locus_tag=SFV_3859 NC_008258.1 Protein Homology CDS 3961858 3962763 . + 0 ID=cds4144;Parent=gene4241;Dbxref=Genbank:WP_000376502.1;Name=WP_000376502.1;gbkey=CDS;product=integrase;protein_id=WP_000376502.1;transl_table=11 NC_008258.1 RefSeq gene 3962738 3963193 . + . ID=gene4242;Name=SFV_RS21315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21315;old_locus_tag=SFV_3860 NC_008258.1 Protein Homology CDS 3962738 3963193 . + 0 ID=cds4145;Parent=gene4242;Dbxref=Genbank:WP_000627185.1;Name=WP_000627185.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000627185.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3962784 3964070 . + . ID=id620;gbkey=repeat_region NC_008258.1 RefSeq region 3962784 3964067 . + . ID=id621;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 3963217 3964056 . + . ID=gene4243;Name=SFV_RS21320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21320;old_locus_tag=SFV_3861 NC_008258.1 Protein Homology CDS 3963217 3964056 . + 0 ID=cds4146;Parent=gene4243;Dbxref=Genbank:WP_000085530.1;Name=WP_000085530.1;gbkey=CDS;product=integrase;protein_id=WP_000085530.1;transl_table=11 NC_008258.1 RefSeq gene 3964161 3964274 . - . ID=gene4244;Name=SFV_RS21325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21325 NC_008258.1 Protein Homology CDS 3964161 3964274 . - 0 ID=cds4147;Parent=gene4244;Dbxref=Genbank:WP_005052132.1;Name=WP_005052132.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052132.1;transl_table=11 NC_008258.1 RefSeq region 3964343 3964686 . + . ID=id622;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq repeat_region 3964771 3966078 . + . ID=id623;gbkey=repeat_region NC_008258.1 RefSeq region 3964772 3966077 . + . ID=id624;gbkey=mobile_element NC_008258.1 RefSeq gene 3964826 3965152 . + . ID=gene4245;Name=SFV_RS21330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21330;old_locus_tag=SFV_3862 NC_008258.1 Protein Homology CDS 3964826 3965152 . + 0 ID=cds4148;Parent=gene4245;Dbxref=Genbank:WP_000165261.1;Name=WP_000165261.1;gbkey=CDS;product=transposase;protein_id=WP_000165261.1;transl_table=11 NC_008258.1 RefSeq gene 3965152 3965505 . + . ID=gene4246;Name=SFV_RS21335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21335 NC_008258.1 Protein Homology CDS 3965152 3965505 . + 0 ID=cds4149;Parent=gene4246;Dbxref=Genbank:WP_001128914.1;Name=WP_001128914.1;gbkey=CDS;product=transposase;protein_id=WP_001128914.1;transl_table=11 NC_008258.1 RefSeq gene 3965517 3966035 . + . ID=gene4247;Name=SFV_RS21340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21340 NC_008258.1 Protein Homology CDS 3965517 3966035 . + 0 ID=cds4150;Parent=gene4247;Dbxref=Genbank:WP_024259184.1;Name=WP_024259184.1;gbkey=CDS;product=transposase;protein_id=WP_024259184.1;transl_table=11 NC_008258.1 RefSeq gene 3966116 3966634 . - . ID=gene4248;Name=SFV_RS21345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21345 NC_008258.1 Protein Homology CDS 3966116 3966634 . - 0 ID=cds4151;Parent=gene4248;Dbxref=Genbank:WP_011069562.1;Name=WP_011069562.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069562.1;transl_table=11 NC_008258.1 RefSeq region 3966762 3968006 . + . ID=id625;gbkey=mobile_element NC_008258.1 RefSeq gene 3966825 3967124 . + . ID=gene4249;Name=SFV_RS21350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21350;old_locus_tag=SFV_3865 NC_008258.1 Protein Homology CDS 3966825 3967124 . + 0 ID=cds4152;Parent=gene4249;Dbxref=Genbank:WP_000165821.1;Name=WP_000165821.1;gbkey=CDS;product=transposase;protein_id=WP_000165821.1;transl_table=11 NC_008258.1 RefSeq gene 3967121 3967976 . + . ID=gene4250;Name=SFV_RS21355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21355;pseudo=true NC_008258.1 Protein Homology CDS 3967121 3967976 . + 0 ID=cds4153;Parent=gene4250;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3967973 3968434 . - . ID=gene4251;Name=SFV_RS21360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21360;old_locus_tag=SFV_3868 NC_008258.1 Protein Homology CDS 3967973 3968434 . - 0 ID=cds4154;Parent=gene4251;Dbxref=Genbank:WP_005106062.1;Name=WP_005106062.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106062.1;transl_table=11 NC_008258.1 RefSeq gene 3968949 3969992 . - . ID=gene4252;Name=SFV_RS21365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21365;old_locus_tag=SFV_3869 NC_008258.1 Protein Homology CDS 3968949 3969992 . - 0 ID=cds4155;Parent=gene4252;Dbxref=Genbank:WP_000999840.1;Name=WP_000999840.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000999840.1;transl_table=11 NC_008258.1 RefSeq gene 3970404 3971588 . - . ID=gene4253;Name=SFV_RS21370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21370;old_locus_tag=SFV_3870 NC_008258.1 Protein Homology CDS 3970404 3971588 . - 0 ID=cds4156;Parent=gene4253;Dbxref=Genbank:WP_001218904.1;Name=WP_001218904.1;gbkey=CDS;product=integrase;protein_id=WP_001218904.1;transl_table=11 NC_008258.1 RefSeq gene 3971888 3971982 . - . ID=gene4254;Name=SFV_RS21375;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS21375;old_locus_tag=SFV_3871 NC_008258.1 tRNAscan-SE tRNA 3971888 3971982 . - . ID=rna97;Parent=gene4254;anticodon=(pos:complement(3971946..3971948));gbkey=tRNA;product=tRNA-Sec NC_008258.1 tRNAscan-SE exon 3971888 3971982 . - . ID=id626;Parent=rna97;anticodon=(pos:complement(3971946..3971948));gbkey=tRNA;product=tRNA-Sec NC_008258.1 RefSeq gene 3972275 3973658 . + . ID=gene4255;Name=SFV_RS21380;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21380;pseudo=true NC_008258.1 Protein Homology CDS 3972275 3973658 . + 0 ID=cds4157;Parent=gene4255;Note=may be involved in the transport of galactosides-pentoses-hexuronides;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 3973668 3975986 . + . ID=gene4256;Name=SFV_RS21385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21385;old_locus_tag=SFV_3873 NC_008258.1 Protein Homology CDS 3973668 3975986 . + 0 ID=cds4158;Parent=gene4256;Dbxref=Genbank:WP_000702914.1;Name=WP_000702914.1;Note=catalyzes the transfer of alpha-xylosyl residue;gbkey=CDS;product=alpha-glucosidase;protein_id=WP_000702914.1;transl_table=11 NC_008258.1 RefSeq gene 3976039 3977748 . - . ID=gene4257;Name=SFV_RS21390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21390;old_locus_tag=SFV_3874 NC_008258.1 Protein Homology CDS 3976039 3977748 . - 0 ID=cds4159;Parent=gene4257;Dbxref=Genbank:WP_005106066.1;Name=WP_005106066.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106066.1;transl_table=11 NC_008258.1 RefSeq gene 3977869 3979260 . - . ID=gene4258;Name=SFV_RS21395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21395;old_locus_tag=SFV_3875 NC_008258.1 Protein Homology CDS 3977869 3979260 . - 0 ID=cds4160;Parent=gene4258;Dbxref=Genbank:WP_001295238.1;Name=WP_001295238.1;Note=high-affinity transporter for xanthine;gbkey=CDS;product=xanthine permease XanP;protein_id=WP_001295238.1;transl_table=11 NC_008258.1 RefSeq gene 3979540 3980745 . + . ID=gene4259;Name=SFV_RS21400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21400;old_locus_tag=SFV_3876 NC_008258.1 Protein Homology CDS 3979540 3980745 . + 0 ID=cds4161;Parent=gene4259;Dbxref=Genbank:WP_000468833.1;Name=WP_000468833.1;Note=is involved with the sodium-dependent uptake of glutamate;gbkey=CDS;product=sodium/glutamate symport carrier protein;protein_id=WP_000468833.1;transl_table=11 NC_008258.1 RefSeq gene 3980779 3982860 . - . ID=gene4260;Name=SFV_RS21405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21405;old_locus_tag=SFV_3877 NC_008258.1 Protein Homology CDS 3980779 3982860 . - 0 ID=cds4162;Parent=gene4260;Dbxref=Genbank:WP_000678442.1;Name=WP_000678442.1;Note=catalyzes branch migration in Holliday junction intermediates;gbkey=CDS;product=ATP-dependent DNA helicase RecG;protein_id=WP_000678442.1;transl_table=11 NC_008258.1 RefSeq gene 3982866 3983555 . - . ID=gene4261;Name=SFV_RS21410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21410;old_locus_tag=SFV_3878 NC_008258.1 Protein Homology CDS 3982866 3983555 . - 0 ID=cds4163;Parent=gene4261;Dbxref=Genbank:WP_001070177.1;Name=WP_001070177.1;Note=specifically modifies tRNA at position G18;gbkey=CDS;product=tRNA (guanosine(18)-2'-O)-methyltransferase;protein_id=WP_001070177.1;transl_table=11 NC_008258.1 RefSeq gene 3983562 3985670 . - . ID=gene4262;Name=SFV_RS21415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21415;old_locus_tag=SFV_3879 NC_008258.1 Protein Homology CDS 3983562 3985670 . - 0 ID=cds4164;Parent=gene4262;Dbxref=Genbank:WP_000280488.1;Name=WP_000280488.1;gbkey=CDS;product=bifunctional (p)ppGpp synthetase II/ guanosine-3'%2C5'-bis pyrophosphate 3'-pyrophosphohydrolase;protein_id=WP_000280488.1;transl_table=11 NC_008258.1 RefSeq gene 3985689 3985964 . - . ID=gene4263;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=SFV_RS21420;old_locus_tag=SFV_3880 NC_008258.1 Protein Homology CDS 3985689 3985964 . - 0 ID=cds4165;Parent=gene4263;Dbxref=Genbank:WP_000135058.1;Name=WP_000135058.1;Note=Promotes RNA polymerase assembly%3B latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits;gbkey=CDS;gene=rpoZ;product=DNA-directed RNA polymerase subunit omega;protein_id=WP_000135058.1;transl_table=11 NC_008258.1 RefSeq gene 3986019 3986642 . - . ID=gene4264;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=SFV_RS21425;old_locus_tag=SFV_3881 NC_008258.1 Protein Homology CDS 3986019 3986642 . - 0 ID=cds4166;Parent=gene4264;Dbxref=Genbank:WP_001295237.1;Name=WP_001295237.1;Note=Essential for recycling GMP and indirectly%2C cGMP;gbkey=CDS;gene=gmk;product=guanylate kinase;protein_id=WP_001295237.1;transl_table=11 NC_008258.1 RefSeq gene 3986900 3988582 . + . ID=gene4265;Name=ligB;gbkey=Gene;gene=ligB;gene_biotype=protein_coding;gene_synonym=yicF;locus_tag=SFV_RS21430;old_locus_tag=SFV_3883 NC_008258.1 Protein Homology CDS 3986900 3988582 . + 0 ID=cds4167;Parent=gene4265;Dbxref=Genbank:WP_024260205.1;Name=WP_024260205.1;Note=this ligase is similar to LigA but it lacks the C-terminal BRCT domain%3B catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+;gbkey=CDS;gene=ligB;product=DNA ligase B;protein_id=WP_024260205.1;transl_table=11 NC_008258.1 RefSeq gene 3988579 3989196 . - . ID=gene4266;Name=SFV_RS21435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21435;old_locus_tag=SFV_3884 NC_008258.1 Protein Homology CDS 3988579 3989196 . - 0 ID=cds4168;Parent=gene4266;Dbxref=Genbank:WP_000924289.1;Name=WP_000924289.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000924289.1;transl_table=11 NC_008258.1 RefSeq gene 3989487 3990311 . - . ID=gene4267;Name=dinD;gbkey=Gene;gene=dinD;gene_biotype=protein_coding;locus_tag=SFV_RS21440;old_locus_tag=SFV_3885 NC_008258.1 Protein Homology CDS 3989487 3990311 . - 0 ID=cds4169;Parent=gene4267;Dbxref=Genbank:WP_005071853.1;Name=WP_005071853.1;gbkey=CDS;gene=dinD;product=DNA damage-inducible protein DnaD;protein_id=WP_005071853.1;transl_table=11 NC_008258.1 RefSeq gene 3990533 3991396 . - . ID=gene4268;Name=SFV_RS21445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21445;old_locus_tag=SFV_3886 NC_008258.1 Protein Homology CDS 3990533 3991396 . - 0 ID=cds4170;Parent=gene4268;Dbxref=Genbank:WP_000621323.1;Name=WP_000621323.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000621323.1;transl_table=11 NC_008258.1 RefSeq gene 3991523 3992239 . + . ID=gene4269;Name=rph;gbkey=Gene;gene=rph;gene_biotype=protein_coding;locus_tag=SFV_RS21450;old_locus_tag=SFV_3887 NC_008258.1 Protein Homology CDS 3991523 3992239 . + 0 ID=cds4171;Parent=gene4269;Dbxref=Genbank:WP_001247089.1;Name=WP_001247089.1;Note=RNase PH%3B tRNA nucleotidyltransferase%3B forms hexamers in Bacillus subtilis%3B phosphoroltic 3'-5' exoribonuclease%3B involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs;gbkey=CDS;gene=rph;product=ribonuclease PH;protein_id=WP_001247089.1;transl_table=11 NC_008258.1 RefSeq gene 3992305 3992946 . + . ID=gene4270;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=SFV_RS21455;old_locus_tag=SFV_3888 NC_008258.1 Protein Homology CDS 3992305 3992946 . + 0 ID=cds4172;Parent=gene4270;Dbxref=Genbank:WP_000806190.1;Name=WP_000806190.1;Note=involved in fifth step of pyrimidine biosynthesis%3B converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate;gbkey=CDS;gene=pyrE;product=orotate phosphoribosyltransferase;protein_id=WP_000806190.1;transl_table=11 NC_008258.1 RefSeq gene 3992983 3993579 . - . ID=gene4271;Name=slmA;gbkey=Gene;gene=slmA;gene_biotype=protein_coding;gene_synonym=ttk;locus_tag=SFV_RS21460;old_locus_tag=SFV_3889 NC_008258.1 Protein Homology CDS 3992983 3993579 . - 0 ID=cds4173;Parent=gene4271;Dbxref=Genbank:WP_000818601.1;Name=WP_000818601.1;Note=FtsZ binding protein%3B synthetically lethal with a defect in the Min system%3B this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly;gbkey=CDS;gene=slmA;product=nucleoid occlusion factor SlmA;protein_id=WP_000818601.1;transl_table=11 NC_008258.1 RefSeq gene 3993686 3994144 . - . ID=gene4272;Name=SFV_RS21465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21465;old_locus_tag=SFV_3890 NC_008258.1 Protein Homology CDS 3993686 3994144 . - 0 ID=cds4174;Parent=gene4272;Dbxref=Genbank:WP_000976081.1;Name=WP_000976081.1;Note=catalyzes the formation of dUMP from dUTP;gbkey=CDS;product=deoxyuridine 5'-triphosphate nucleotidohydrolase;protein_id=WP_000976081.1;transl_table=11 NC_008258.1 RefSeq gene 3994122 3995342 . - . ID=gene4273;Name=SFV_RS21470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21470;old_locus_tag=SFV_3891 NC_008258.1 Protein Homology CDS 3994122 3995342 . - 0 ID=cds4175;Parent=gene4273;Dbxref=Genbank:WP_000050133.1;Name=WP_000050133.1;Note=catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine%2C which is then decarboxylated to form 4'-phosphopantotheine;gbkey=CDS;product=phosphopantothenoylcysteine decarboxylase;protein_id=WP_000050133.1;transl_table=11 NC_008258.1 RefSeq gene 3995514 3996182 . + . ID=gene4274;Name=SFV_RS21475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21475;old_locus_tag=SFV_3892 NC_008258.1 Protein Homology CDS 3995514 3996182 . + 0 ID=cds4176;Parent=gene4274;Dbxref=Genbank:WP_001297375.1;Name=WP_001297375.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001297375.1;transl_table=11 NC_008258.1 RefSeq gene 3996399 3996635 . + . ID=gene4275;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=SFV_RS21480 NC_008258.1 Protein Homology CDS 3996399 3996635 . + 0 ID=cds4177;Parent=gene4275;Dbxref=Genbank:WP_000091955.1;Name=WP_000091955.1;Note=required for 70S ribosome assembly;gbkey=CDS;gene=rpmB;product=50S ribosomal protein L28;protein_id=WP_000091955.1;transl_table=11 NC_008258.1 RefSeq gene 3996656 3996823 . + . ID=gene4276;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=SFV_RS21485;old_locus_tag=SFV_3893 NC_008258.1 Protein Homology CDS 3996656 3996823 . + 0 ID=cds4178;Parent=gene4276;Dbxref=Genbank:WP_001051798.1;Name=WP_001051798.1;Note=in Escherichia coli BM108%2C a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function%3B there are paralogous genes in several bacterial genomes%2C and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31%3B the proteins in this group lack the CXXC motif;gbkey=CDS;gene=rpmG;product=50S ribosomal protein L33;protein_id=WP_001051798.1;transl_table=11 NC_008258.1 RefSeq gene 3996921 3997730 . + . ID=gene4277;Name=SFV_RS21490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21490;old_locus_tag=SFV_3894 NC_008258.1 Protein Homology CDS 3996921 3997730 . + 0 ID=cds4179;Parent=gene4277;Dbxref=Genbank:WP_001114533.1;Name=WP_001114533.1;Note=Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases;gbkey=CDS;product=formamidopyrimidine-DNA glycosylase;protein_id=WP_001114533.1;transl_table=11 NC_008258.1 RefSeq gene 3997769 3998248 . - . ID=gene4278;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=SFV_RS21495;old_locus_tag=SFV_3895 NC_008258.1 Protein Homology CDS 3997769 3998248 . - 0 ID=cds4180;Parent=gene4278;Dbxref=Genbank:WP_001171866.1;Name=WP_001171866.1;Note=Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA;gbkey=CDS;gene=coaD;product=phosphopantetheine adenylyltransferase;protein_id=WP_001171866.1;transl_table=11 NC_008258.1 RefSeq gene 3998256 3999533 . - . ID=gene4279;Name=SFV_RS21500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21500;old_locus_tag=SFV_3896 NC_008258.1 Protein Homology CDS 3998256 3999533 . - 0 ID=cds4181;Parent=gene4279;Dbxref=Genbank:WP_000891565.1;Name=WP_000891565.1;Note=catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A;gbkey=CDS;product=3-deoxy-D-manno-octulosonic acid transferase;protein_id=WP_000891565.1;transl_table=11 NC_008258.1 RefSeq repeat_region 3999606 4000383 . + . ID=id627;gbkey=repeat_region NC_008258.1 RefSeq region 3999612 4000379 . + . ID=id628;gbkey=mobile_element NC_008258.1 RefSeq gene 3999718 3999942 . + . ID=gene4280;Name=SFV_RS21505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21505 NC_008258.1 Protein Homology CDS 3999718 3999942 . + 0 ID=cds4182;Parent=gene4280;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 3999969 4000364 . + . ID=gene4281;Name=SFV_RS21510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21510 NC_008258.1 Protein Homology CDS 3999969 4000364 . + 0 ID=cds4183;Parent=gene4281;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 4000758 4001780 . + . ID=gene4282;Name=SFV_RS21515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21515;old_locus_tag=SFV_3899 NC_008258.1 Protein Homology CDS 4000758 4001780 . + 0 ID=cds4184;Parent=gene4282;Dbxref=Genbank:WP_001303718.1;Name=WP_001303718.1;Note=catalyzes the transfer of heptose(III) to heptose(II) in the lipopolysaccharide inner core;gbkey=CDS;product=LPS core heptosyltransferase RfaQ;protein_id=WP_001303718.1;transl_table=11 NC_008258.1 RefSeq gene 4001777 4002901 . + . ID=gene4283;Name=SFV_RS21520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21520;old_locus_tag=SFV_3900 NC_008258.1 Protein Homology CDS 4001777 4002901 . + 0 ID=cds4185;Parent=gene4283;Dbxref=Genbank:WP_000634268.1;Name=WP_000634268.1;Note=catalyzes the addition of the first glucose residue to the LPS core;gbkey=CDS;product=glucosyltransferase;protein_id=WP_000634268.1;transl_table=11 NC_008258.1 RefSeq gene 4002894 4003691 . + . ID=gene4284;Name=SFV_RS21525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21525;old_locus_tag=SFV_3901 NC_008258.1 Protein Homology CDS 4002894 4003691 . + 0 ID=cds4186;Parent=gene4284;Dbxref=Genbank:WP_005052194.1;Name=WP_005052194.1;Note=catalyzes the phosphorylation of heptose I in the lipopolysaccharide core;gbkey=CDS;product=LPS core heptose(I) kinase RfaP;protein_id=WP_005052194.1;transl_table=11 NC_008258.1 RefSeq gene 4003734 4004741 . + . ID=gene4285;Name=SFV_RS21530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21530;old_locus_tag=SFV_3902 NC_008258.1 Protein Homology CDS 4003734 4004741 . + 0 ID=cds4187;Parent=gene4285;Dbxref=Genbank:WP_000080639.1;Name=WP_000080639.1;gbkey=CDS;product=LPS 1%2C3-galactosyltransferase;protein_id=WP_000080639.1;transl_table=11 NC_008258.1 RefSeq gene 4004767 4005474 . + . ID=gene4286;Name=SFV_RS21535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21535;old_locus_tag=SFV_3903 NC_008258.1 Protein Homology CDS 4004767 4005474 . + 0 ID=cds4188;Parent=gene4286;Dbxref=Genbank:WP_000639946.1;Name=WP_000639946.1;gbkey=CDS;product=LPS biosynthesis protein;protein_id=WP_000639946.1;transl_table=11 NC_008258.1 RefSeq gene 4005499 4006512 . + . ID=gene4287;Name=SFV_RS21540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21540;old_locus_tag=SFV_3904 NC_008258.1 Protein Homology CDS 4005499 4006512 . + 0 ID=cds4189;Parent=gene4287;Dbxref=Genbank:WP_000346002.1;Name=WP_000346002.1;gbkey=CDS;product=UDP-glucose--(galactosyl) LPS alpha1%2C2-glucosyltransferase;protein_id=WP_000346002.1;transl_table=11 NC_008258.1 RefSeq gene 4006521 4007663 . + . ID=gene4288;Name=SFV_RS21545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21545;old_locus_tag=SFV_3905 NC_008258.1 Protein Homology CDS 4006521 4007663 . + 0 ID=cds4190;Parent=gene4288;Dbxref=Genbank:WP_000227806.1;Name=WP_000227806.1;gbkey=CDS;product=LPS 1%2C2-N-acetylglucosaminetransferase;protein_id=WP_000227806.1;transl_table=11 NC_008258.1 RefSeq gene 4007699 4008907 . - . ID=gene4289;Name=SFV_RS21550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21550;old_locus_tag=SFV_3906 NC_008258.1 Protein Homology CDS 4007699 4008907 . - 0 ID=cds4191;Parent=gene4289;Dbxref=Genbank:WP_000204753.1;Name=WP_000204753.1;gbkey=CDS;product=ligase;protein_id=WP_000204753.1;transl_table=11 NC_008258.1 RefSeq gene 4008904 4009896 . - . ID=gene4290;Name=SFV_RS21555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21555;old_locus_tag=SFV_3907 NC_008258.1 Protein Homology CDS 4008904 4009896 . - 0 ID=cds4192;Parent=gene4290;Dbxref=Genbank:WP_001264565.1;Name=WP_001264565.1;gbkey=CDS;product=ADP-heptose--LPS heptosyl transferase;protein_id=WP_001264565.1;transl_table=11 NC_008258.1 RefSeq gene 4009900 4010946 . - . ID=gene4291;Name=SFV_RS21560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21560;old_locus_tag=SFV_3908 NC_008258.1 Protein Homology CDS 4009900 4010946 . - 0 ID=cds4193;Parent=gene4291;Dbxref=Genbank:WP_000699228.1;Name=WP_000699228.1;Note=catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core;gbkey=CDS;product=ADP-heptose--LPS heptosyl transferase;protein_id=WP_000699228.1;transl_table=11 NC_008258.1 RefSeq gene 4010956 4011888 . - . ID=gene4292;Name=rfaD;gbkey=Gene;gene=rfaD;gene_biotype=protein_coding;locus_tag=SFV_RS21565;old_locus_tag=SFV_3909 NC_008258.1 Protein Homology CDS 4010956 4011888 . - 0 ID=cds4194;Parent=gene4292;Dbxref=Genbank:WP_000587750.1;Name=WP_000587750.1;Note=catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose;gbkey=CDS;gene=rfaD;product=ADP-L-glycero-D-manno-heptose-6-epimerase;protein_id=WP_000587750.1;transl_table=11 NC_008258.1 RefSeq gene 4012192 4013049 . + . ID=gene4293;Name=SFV_RS21570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21570;old_locus_tag=SFV_3910 NC_008258.1 Protein Homology CDS 4012192 4013049 . + 0 ID=cds4195;Parent=gene4293;Dbxref=Genbank:WP_000842816.1;Name=WP_000842816.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000842816.1;transl_table=11 NC_008258.1 RefSeq gene 4013324 4014520 . + . ID=gene4294;Name=SFV_RS21575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21575;old_locus_tag=SFV_3911 NC_008258.1 Protein Homology CDS 4013324 4014520 . + 0 ID=cds4196;Parent=gene4294;Dbxref=Genbank:WP_001213849.1;Name=WP_001213849.1;Note=catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine;gbkey=CDS;product=2-amino-3-ketobutyrate CoA ligase;protein_id=WP_001213849.1;transl_table=11 NC_008258.1 RefSeq gene 4014530 4015555 . + . ID=gene4295;Name=tdh;gbkey=Gene;gene=tdh;gene_biotype=protein_coding;locus_tag=SFV_RS21580;old_locus_tag=SFV_3912 NC_008258.1 Protein Homology CDS 4014530 4015555 . + 0 ID=cds4197;Parent=gene4295;Dbxref=Genbank:WP_000646014.1;Name=WP_000646014.1;Note=converts threonine and NAD to 1%2C2-amino-3-oxobutanoate and NADH%3B functions in threonine catabolism;gbkey=CDS;gene=tdh;product=L-threonine 3-dehydrogenase;protein_id=WP_000646014.1;transl_table=11 NC_008258.1 RefSeq gene 4015794 4016633 . + . ID=gene4296;Name=SFV_RS21585;end_range=4016633,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21585;old_locus_tag=SFV_3913;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 4015794 4016633 . + 0 ID=cds4198;Parent=gene4296;end_range=4016633,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=glycosyl transferase;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 4016627 4017403 . + . ID=id629;gbkey=repeat_region NC_008258.1 RefSeq region 4016632 4017399 . + . ID=id630;gbkey=mobile_element NC_008258.1 RefSeq gene 4016881 4017384 . + . ID=gene4297;Name=SFV_RS21590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21590;old_locus_tag=SFV_3914 NC_008258.1 Protein Homology CDS 4016881 4017384 . + 0 ID=cds4199;Parent=gene4297;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 4017402 4017605 . + . ID=gene4298;Name=SFV_RS21595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21595 NC_008258.1 Protein Homology CDS 4017402 4017605 . + 0 ID=cds4200;Parent=gene4298;Dbxref=Genbank:WP_024260319.1;Name=WP_024260319.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024260319.1;transl_table=11 NC_008258.1 RefSeq gene 4017592 4018551 . - . ID=gene4299;Name=SFV_RS21600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21600;old_locus_tag=SFV_3915 NC_008258.1 Protein Homology CDS 4017592 4018551 . - 0 ID=cds4201;Parent=gene4299;Dbxref=Genbank:WP_000483856.1;Name=WP_000483856.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000483856.1;transl_table=11 NC_008258.1 RefSeq gene 4018555 4019838 . - . ID=gene4300;Name=SFV_RS21605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21605;old_locus_tag=SFV_3916 NC_008258.1 Protein Homology CDS 4018555 4019838 . - 0 ID=cds4202;Parent=gene4300;Dbxref=Genbank:WP_001214153.1;Name=WP_001214153.1;gbkey=CDS;product=peptidase M37;protein_id=WP_001214153.1;transl_table=11 NC_008258.1 RefSeq gene 4019848 4021392 . - . ID=gene4301;Name=SFV_RS21610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21610;old_locus_tag=SFV_3917 NC_008258.1 Protein Homology CDS 4019848 4021392 . - 0 ID=cds4203;Parent=gene4301;Dbxref=Genbank:WP_005106088.1;Name=WP_005106088.1;Note=catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate;gbkey=CDS;product=phosphoglyceromutase;protein_id=WP_005106088.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4021506 4022284 . + . ID=id631;gbkey=repeat_region NC_008258.1 RefSeq region 4021511 4022278 . - . ID=id632;gbkey=mobile_element NC_008258.1 RefSeq gene 4021526 4021819 . - . ID=gene4302;Name=SFV_RS21615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21615 NC_008258.1 Protein Homology CDS 4021526 4021819 . - 0 ID=cds4204;Parent=gene4302;Dbxref=Genbank:WP_000951587.1;Name=WP_000951587.1;gbkey=CDS;product=transposase;protein_id=WP_000951587.1;transl_table=11 NC_008258.1 RefSeq gene 4021948 4022172 . - . ID=gene4303;Name=SFV_RS21620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21620 NC_008258.1 Protein Homology CDS 4021948 4022172 . - 0 ID=cds4205;Parent=gene4303;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4022413 4022844 . + . ID=gene4304;Name=SFV_RS21625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21625;old_locus_tag=SFV_3920 NC_008258.1 Protein Homology CDS 4022413 4022844 . + 0 ID=cds4206;Parent=gene4304;Dbxref=Genbank:WP_005052206.1;Name=WP_005052206.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005052206.1;transl_table=11 NC_008258.1 RefSeq gene 4022986 4023237 . + . ID=gene4305;Name=SFV_RS21630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21630;old_locus_tag=SFV_3921 NC_008258.1 Protein Homology CDS 4022986 4023237 . + 0 ID=cds4207;Parent=gene4305;Dbxref=Genbank:WP_000024392.1;Name=WP_000024392.1;gbkey=CDS;product=glutaredoxin;protein_id=WP_000024392.1;transl_table=11 NC_008258.1 RefSeq gene 4023300 4023767 . + . ID=gene4306;Name=SFV_RS21635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21635;old_locus_tag=SFV_3922 NC_008258.1 Protein Homology CDS 4023300 4023767 . + 0 ID=cds4208;Parent=gene4306;Dbxref=Genbank:WP_000003377.1;Name=WP_000003377.1;Note=molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm%3B in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA;gbkey=CDS;product=protein-export protein SecB;protein_id=WP_000003377.1;transl_table=11 NC_008258.1 RefSeq gene 4023767 4024786 . + . ID=gene4307;Name=SFV_RS21640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21640;old_locus_tag=SFV_3923 NC_008258.1 Protein Homology CDS 4023767 4024786 . + 0 ID=cds4209;Parent=gene4307;Dbxref=Genbank:WP_001076203.1;Name=WP_001076203.1;gbkey=CDS;product=glycerol-3-phosphate dehydrogenase [NAD(P)+];protein_id=WP_001076203.1;transl_table=11 NC_008258.1 RefSeq gene 4024866 4025687 . + . ID=gene4308;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=SFV_RS21645;old_locus_tag=SFV_3924 NC_008258.1 Protein Homology CDS 4024866 4025687 . + 0 ID=cds4210;Parent=gene4308;Dbxref=Genbank:WP_001277561.1;Name=WP_001277561.1;Note=catalyzes the O-acetylation of serine;gbkey=CDS;gene=cysE;product=serine acetyltransferase;protein_id=WP_001277561.1;transl_table=11 NC_008258.1 RefSeq gene 4025740 4026213 . - . ID=gene4309;Name=SFV_RS21650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21650;old_locus_tag=SFV_3925 NC_008258.1 Protein Homology CDS 4025740 4026213 . - 0 ID=cds4211;Parent=gene4309;Dbxref=Genbank:WP_000932346.1;Name=WP_000932346.1;Note=member of the SPOUT superfamily of RNA methyltransferases;gbkey=CDS;product=rRNA methyltransferase;protein_id=WP_000932346.1;transl_table=11 NC_008258.1 RefSeq gene 4026409 4027599 . - . ID=gene4310;Name=lldD;gbkey=Gene;gene=lldD;gene_biotype=protein_coding;locus_tag=SFV_RS21655;old_locus_tag=SFV_3926 NC_008258.1 Protein Homology CDS 4026409 4027599 . - 0 ID=cds4212;Parent=gene4310;Dbxref=Genbank:WP_000586964.1;Name=WP_000586964.1;Note=flavin mononucleotide-dependent dehydrogenase%3B functions in aerobic respiration and also has a role in anaerobic nitrate respiration;gbkey=CDS;gene=lldD;product=lactate dehydrogenase;protein_id=WP_000586964.1;transl_table=11 NC_008258.1 RefSeq gene 4027596 4028372 . - . ID=gene4311;Name=SFV_RS21660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21660;old_locus_tag=SFV_3927 NC_008258.1 Protein Homology CDS 4027596 4028372 . - 0 ID=cds4213;Parent=gene4311;Dbxref=Genbank:WP_000636500.1;Name=WP_000636500.1;Note=represses the lctPRD operon;gbkey=CDS;product=dual role activator/repressor for lldPRD operon;protein_id=WP_000636500.1;transl_table=11 NC_008258.1 RefSeq gene 4028372 4030027 . - . ID=gene4312;Name=SFV_RS21665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21665;old_locus_tag=SFV_3928 NC_008258.1 Protein Homology CDS 4028372 4030027 . - 0 ID=cds4214;Parent=gene4312;Dbxref=Genbank:WP_005052212.1;Name=WP_005052212.1;gbkey=CDS;product=L-lactate permease;protein_id=WP_005052212.1;transl_table=11 NC_008258.1 RefSeq gene 4030395 4034694 . - . ID=gene4313;Name=SFV_RS21670;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21670;pseudo=true NC_008258.1 Protein Homology CDS 4030395 4034694 . - 0 ID=cds4215;Parent=gene4313;exception=annotated by transcript or proteomic data;gbkey=CDS;product=adhesin;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 4032701 4032817 . + . ID=id633;gbkey=repeat_region NC_008258.1 RefSeq repeat_region 4032935 4033051 . + . ID=id634;gbkey=repeat_region NC_008258.1 RefSeq gene 4034738 4035421 . - . ID=gene4314;Name=SFV_RS21675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21675;old_locus_tag=SFV_3931 NC_008258.1 Protein Homology CDS 4034738 4035421 . - 0 ID=cds4216;Parent=gene4314;Dbxref=Genbank:WP_001049544.1;Name=WP_001049544.1;gbkey=CDS;product=membrane protein;protein_id=WP_001049544.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4035795 4036567 . + . ID=id635;gbkey=repeat_region NC_008258.1 RefSeq region 4035797 4036564 . - . ID=id636;gbkey=mobile_element NC_008258.1 RefSeq gene 4035812 4036207 . - . ID=gene4315;Name=SFV_RS21680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21680 NC_008258.1 Protein Homology CDS 4035812 4036207 . - 0 ID=cds4217;Parent=gene4315;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 4036234 4036458 . - . ID=gene4316;Name=SFV_RS21685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21685 NC_008258.1 Protein Homology CDS 4036234 4036458 . - 0 ID=cds4218;Parent=gene4316;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4036742 4037104 . - . ID=gene4317;Name=SFV_RS21690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21690;old_locus_tag=SFV_3934 NC_008258.1 Protein Homology CDS 4036742 4037104 . - 0 ID=cds4219;Parent=gene4317;Dbxref=Genbank:WP_000665677.1;Name=WP_000665677.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000665677.1;transl_table=11 NC_008258.1 RefSeq gene 4037388 4037597 . + . ID=gene4318;Name=SFV_RS21695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21695;old_locus_tag=SFV_3935 NC_008258.1 Protein Homology CDS 4037388 4037597 . + 0 ID=cds4220;Parent=gene4318;Dbxref=Genbank:WP_000517100.1;Name=WP_000517100.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000517100.1;transl_table=11 NC_008258.1 RefSeq gene 4037609 4038199 . - . ID=gene4319;Name=SFV_RS21700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21700;old_locus_tag=SFV_3936 NC_008258.1 Protein Homology CDS 4037609 4038199 . - 0 ID=cds4221;Parent=gene4319;Dbxref=Genbank:WP_032082767.1;Name=WP_032082767.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032082767.1;transl_table=11 NC_008258.1 RefSeq gene 4038196 4039344 . - . ID=gene4320;Name=SFV_RS21705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21705;old_locus_tag=SFV_3937 NC_008258.1 Protein Homology CDS 4038196 4039344 . - 0 ID=cds4222;Parent=gene4320;Dbxref=Genbank:WP_000645424.1;Name=WP_000645424.1;gbkey=CDS;product=mannitol-1-phosphate 5-dehydrogenase;protein_id=WP_000645424.1;transl_table=11 NC_008258.1 RefSeq gene 4039439 4041352 . - . ID=gene4321;Name=SFV_RS21710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21710;old_locus_tag=SFV_3938 NC_008258.1 Protein Homology CDS 4039439 4041352 . - 0 ID=cds4223;Parent=gene4321;Dbxref=Genbank:WP_000093279.1;Name=WP_000093279.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B subunit IIC forms the translocation channel and contains the specific substrate-binding site%3B subunit IIA is phosphorylated and transfers the phosphoryl group to the IIB subunit%3B subunit IIB transfers the phosphoryl group to the substrate;gbkey=CDS;product=PTS mannitol transporter subunit IIABC;protein_id=WP_000093279.1;transl_table=11 NC_008258.1 RefSeq gene 4041889 4042251 . + . ID=gene4322;Name=SFV_RS21715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21715;old_locus_tag=SFV_3939 NC_008258.1 Protein Homology CDS 4041889 4042251 . + 0 ID=cds4224;Parent=gene4322;Dbxref=Genbank:WP_000479627.1;Name=WP_000479627.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000479627.1;transl_table=11 NC_008258.1 RefSeq gene 4042254 4043339 . + . ID=gene4323;Name=SFV_RS21720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21720;old_locus_tag=SFV_3940 NC_008258.1 Protein Homology CDS 4042254 4043339 . + 0 ID=cds4225;Parent=gene4323;Dbxref=Genbank:WP_000364912.1;Name=WP_000364912.1;gbkey=CDS;product=membrane protein;protein_id=WP_000364912.1;transl_table=11 NC_008258.1 RefSeq gene 4043410 4044018 . + . ID=gene4324;Name=SFV_RS21725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21725;old_locus_tag=SFV_3941 NC_008258.1 Protein Homology CDS 4043410 4044018 . + 0 ID=cds4226;Parent=gene4324;Dbxref=Genbank:WP_000779797.1;Name=WP_000779797.1;gbkey=CDS;product=glutathione S-transferase;protein_id=WP_000779797.1;transl_table=11 NC_008258.1 RefSeq gene 4044116 4045507 . + . ID=gene4325;Name=SFV_RS21730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21730;old_locus_tag=SFV_3942 NC_008258.1 Protein Homology CDS 4044116 4045507 . + 0 ID=cds4227;Parent=gene4325;Dbxref=Genbank:WP_000206284.1;Name=WP_000206284.1;Note=catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis;gbkey=CDS;product=L-seryl-tRNA(Sec) selenium transferase;protein_id=WP_000206284.1;transl_table=11 NC_008258.1 RefSeq gene 4045504 4047348 . + . ID=gene4326;Name=SFV_RS21735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21735;old_locus_tag=SFV_3943 NC_008258.1 Protein Homology CDS 4045504 4047348 . + 0 ID=cds4228;Parent=gene4326;Dbxref=Genbank:WP_000582449.1;Name=WP_000582449.1;gbkey=CDS;product=selenocysteine-specific translation elongation factor;protein_id=WP_000582449.1;transl_table=11 NC_008258.1 RefSeq gene 4047538 4048689 . + . ID=gene4327;Name=SFV_RS21740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21740;old_locus_tag=SFV_3944 NC_008258.1 Protein Homology CDS 4047538 4048689 . + 0 ID=cds4229;Parent=gene4327;Dbxref=Genbank:WP_000168707.1;Name=WP_000168707.1;gbkey=CDS;product=alcohol dehydrogenase;protein_id=WP_000168707.1;transl_table=11 NC_008258.1 RefSeq gene 4048854 4050392 . + . ID=gene4328;Name=SFV_RS21745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21745;old_locus_tag=SFV_3945 NC_008258.1 Protein Homology CDS 4048854 4050392 . + 0 ID=cds4230;Parent=gene4328;Dbxref=Genbank:WP_001614076.1;Name=WP_001614076.1;Note=catalyzes the oxidation of acetaldehyde%2C benzaldehyde%2C propionaldehyde and other aldehydes;gbkey=CDS;product=aldehyde dehydrogenase;protein_id=WP_001614076.1;transl_table=11 NC_008258.1 RefSeq gene 4050611 4050823 . - . ID=gene4329;Name=SFV_RS21750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21750;old_locus_tag=SFV_3946 NC_008258.1 Protein Homology CDS 4050611 4050823 . - 0 ID=cds4231;Parent=gene4329;Dbxref=Genbank:WP_000332751.1;Name=WP_000332751.1;gbkey=CDS;product=membrane protein;protein_id=WP_000332751.1;transl_table=11 NC_008258.1 RefSeq gene 4050937 4051260 . + . ID=gene4330;Name=SFV_RS21755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21755;old_locus_tag=SFV_3947 NC_008258.1 Protein Homology CDS 4050937 4051260 . + 0 ID=cds4232;Parent=gene4330;Dbxref=Genbank:WP_000478188.1;Name=WP_000478188.1;gbkey=CDS;product=membrane protein;protein_id=WP_000478188.1;transl_table=11 NC_008258.1 RefSeq gene 4051266 4052402 . + . ID=gene4331;Name=SFV_RS21760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21760;old_locus_tag=SFV_3948 NC_008258.1 Protein Homology CDS 4051266 4052402 . + 0 ID=cds4233;Parent=gene4331;Dbxref=Genbank:WP_000364897.1;Name=WP_000364897.1;gbkey=CDS;product=membrane protein;protein_id=WP_000364897.1;transl_table=11 NC_008258.1 RefSeq gene 4052399 4053025 . - . ID=gene4332;Name=SFV_RS21765;end_range=4053025,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21765;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 4052399 4053025 . - 0 ID=cds4234;Parent=gene4332;end_range=4053025,.;gbkey=CDS;partial=true;product=LysR family transcriptional regulator;pseudo=true;transl_except=(pos:complement(4053005..4053007)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq repeat_region 4052975 4053752 . + . ID=id637;gbkey=repeat_region NC_008258.1 RefSeq region 4052982 4053749 . + . ID=id638;gbkey=mobile_element NC_008258.1 RefSeq gene 4053231 4053734 . + . ID=gene4333;Name=SFV_RS21770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21770;old_locus_tag=SFV_3951 NC_008258.1 Protein Homology CDS 4053231 4053734 . + 0 ID=cds4235;Parent=gene4333;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 4053751 4054148 . - . ID=gene4334;Name=SFV_RS21775;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21775;partial=true;pseudo=true;start_range=.,4053751 NC_008258.1 Protein Homology CDS 4053751 4054148 . - 0 ID=cds4236;Parent=gene4334;exception=annotated by transcript or proteomic data;gbkey=CDS;partial=true;product=LysR family transcriptional regulator;pseudo=true;start_range=.,4053751;transl_table=11 NC_008258.1 RefSeq gene 4054272 4055012 . + . ID=gene4335;Name=SFV_RS21780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21780;old_locus_tag=SFV_3952 NC_008258.1 Protein Homology CDS 4054272 4055012 . + 0 ID=cds4237;Parent=gene4335;Dbxref=Genbank:WP_000906806.1;Name=WP_000906806.1;gbkey=CDS;product=outer membrane protein;protein_id=WP_000906806.1;transl_table=11 NC_008258.1 RefSeq gene 4055133 4057112 . - . ID=gene4336;Name=SFV_RS21785;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21785;old_locus_tag=SFV_3953 NC_008258.1 Protein Homology CDS 4055133 4057112 . - 0 ID=cds4238;Parent=gene4336;Dbxref=Genbank:WP_001026891.1;Name=WP_001026891.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001026891.1;transl_table=11 NC_008258.1 RefSeq gene 4057123 4058523 . - . ID=gene4337;Name=SFV_RS21790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21790;old_locus_tag=SFV_3954 NC_008258.1 Protein Homology CDS 4057123 4058523 . - 0 ID=cds4239;Parent=gene4337;Dbxref=Genbank:WP_000204831.1;Name=WP_000204831.1;gbkey=CDS;product=permease;protein_id=WP_000204831.1;transl_table=11 NC_008258.1 RefSeq gene 4058749 4059564 . + . ID=gene4338;Name=SFV_RS21795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21795;old_locus_tag=SFV_3955 NC_008258.1 Protein Homology CDS 4058749 4059564 . + 0 ID=cds4240;Parent=gene4338;Dbxref=Genbank:WP_000891839.1;Name=WP_000891839.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000891839.1;transl_table=11 NC_008258.1 RefSeq gene 4059596 4060291 . - . ID=gene4339;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=SFV_RS21800;old_locus_tag=SFV_3956 NC_008258.1 Protein Homology CDS 4059596 4060291 . - 0 ID=cds4241;Parent=gene4339;Dbxref=Genbank:WP_000893144.1;Name=WP_000893144.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase SgbE;protein_id=WP_000893144.1;transl_table=11 NC_008258.1 RefSeq gene 4060285 4061145 . - . ID=gene4340;Name=SFV_RS21805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21805;old_locus_tag=SFV_3957 NC_008258.1 Protein Homology CDS 4060285 4061145 . - 0 ID=cds4242;Parent=gene4340;Dbxref=Genbank:WP_005108786.1;Name=WP_005108786.1;Note=L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated%3B may be involved in the utilization of 2%2C3-diketo-L-gulonate;gbkey=CDS;product=L-xylulose 5-phosphate 3-epimerase;protein_id=WP_005108786.1;transl_table=11 NC_008258.1 RefSeq gene 4061138 4061800 . - . ID=gene4341;Name=sgbH;gbkey=Gene;gene=sgbH;gene_biotype=protein_coding;locus_tag=SFV_RS21810;old_locus_tag=SFV_3958 NC_008258.1 Protein Homology CDS 4061138 4061800 . - 0 ID=cds4243;Parent=gene4341;Dbxref=Genbank:WP_000089543.1;Name=WP_000089543.1;Note=catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate;gbkey=CDS;gene=sgbH;product=3-keto-L-gulonate-6-phosphate decarboxylase;protein_id=WP_000089543.1;transl_table=11 NC_008258.1 RefSeq gene 4061797 4063293 . - . ID=gene4342;Name=SFV_RS21815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21815;old_locus_tag=SFV_3959 NC_008258.1 Protein Homology CDS 4061797 4063293 . - 0 ID=cds4244;Parent=gene4342;Dbxref=Genbank:WP_000196077.1;Name=WP_000196077.1;Note=catalyzes the formation of L-xylulose 5-phosphate and 3-dehydro-L-gulonate 6-phosphate from L-xylulose or 3-dehydro-L-gulonate%2C respectively;gbkey=CDS;product=L-xylulose/3-keto-L-gulonate kinase;protein_id=WP_000196077.1;transl_table=11 NC_008258.1 RefSeq gene 4063297 4064283 . - . ID=gene4343;Name=SFV_RS21820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21820;old_locus_tag=SFV_3960 NC_008258.1 Protein Homology CDS 4063297 4064283 . - 0 ID=cds4245;Parent=gene4343;Dbxref=Genbank:WP_000776892.1;Name=WP_000776892.1;Note=involved in the transport of 2%2C3-diketo-L-gulonate;gbkey=CDS;product=transporter;protein_id=WP_000776892.1;transl_table=11 NC_008258.1 RefSeq gene 4064296 4065573 . - . ID=gene4344;Name=SFV_RS21825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21825;old_locus_tag=SFV_3961 NC_008258.1 Protein Homology CDS 4064296 4065573 . - 0 ID=cds4246;Parent=gene4344;Dbxref=Genbank:WP_000279578.1;Name=WP_000279578.1;Note=TRAP family transporter%3B with YiaMO is involved in the uptake of L-dehydroascorbate;gbkey=CDS;product=dehydroascorbate transporter;protein_id=WP_000279578.1;transl_table=11 NC_008258.1 RefSeq gene 4065576 4065878 . - . ID=gene4345;Name=SFV_RS21830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21830;old_locus_tag=SFV_3962 NC_008258.1 Protein Homology CDS 4065576 4065878 . - 0 ID=cds4247;Parent=gene4345;Dbxref=Genbank:WP_005086295.1;Name=WP_005086295.1;Note=membrane-spanning protein involved in uptake of 2%2C3-diketo-L-gulonate%3B part of the tri-partite ATP-independent periplasmic transport system (TRAP) YiaMNO;gbkey=CDS;product=phage tail protein;protein_id=WP_005086295.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4065886 4066665 . + . ID=id639;gbkey=repeat_region NC_008258.1 RefSeq region 4065893 4066660 . - . ID=id640;gbkey=mobile_element NC_008258.1 RefSeq gene 4065908 4066303 . - . ID=gene4346;Name=SFV_RS21835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21835 NC_008258.1 Protein Homology CDS 4065908 4066303 . - 0 ID=cds4248;Parent=gene4346;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 4066330 4066554 . - . ID=gene4347;Name=SFV_RS21840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21840 NC_008258.1 Protein Homology CDS 4066330 4066554 . - 0 ID=cds4249;Parent=gene4347;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4066656 4066808 . - . ID=gene4348;Name=SFV_RS21845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21845 NC_008258.1 Protein Homology CDS 4066656 4066808 . - 0 ID=cds4250;Parent=gene4348;Dbxref=Genbank:WP_000576085.1;Name=WP_000576085.1;gbkey=CDS;product=beta-galactosidase;protein_id=WP_000576085.1;transl_table=11 NC_008258.1 RefSeq gene 4066820 4067812 . - . ID=gene4349;Name=SFV_RS21850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21850;old_locus_tag=SFV_3965 NC_008258.1 Protein Homology CDS 4066820 4067812 . - 0 ID=cds4251;Parent=gene4349;Dbxref=Genbank:WP_000869029.1;Name=WP_000869029.1;Note=NAD(P)H-dependent%3B catalyzes the reduction of 2%2C3-diketo-L-gulonate to 3-keto-L-gulonate;gbkey=CDS;product=2%2C3-diketo-L-gulonate reductase;protein_id=WP_000869029.1;transl_table=11 NC_008258.1 RefSeq gene 4068013 4068861 . + . ID=gene4350;Name=SFV_RS21855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21855;old_locus_tag=SFV_3966 NC_008258.1 Protein Homology CDS 4068013 4068861 . + 0 ID=cds4252;Parent=gene4350;Dbxref=Genbank:WP_000514230.1;Name=WP_000514230.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000514230.1;transl_table=11 NC_008258.1 RefSeq gene 4068963 4069436 . + . ID=gene4351;Name=SFV_RS21860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21860;old_locus_tag=SFV_3967 NC_008258.1 Protein Homology CDS 4068963 4069436 . + 0 ID=cds4253;Parent=gene4351;Dbxref=Genbank:WP_001078799.1;Name=WP_001078799.1;gbkey=CDS;product=electron transporter;protein_id=WP_001078799.1;transl_table=11 NC_008258.1 RefSeq gene 4069455 4069583 . - . ID=gene4352;Name=SFV_RS21865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21865 NC_008258.1 Protein Homology CDS 4069455 4069583 . - 0 ID=cds4254;Parent=gene4352;Dbxref=Genbank:WP_001331222.1;Name=WP_001331222.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001331222.1;transl_table=11 NC_008258.1 RefSeq gene 4069587 4070840 . - . ID=gene4353;Name=avtA;gbkey=Gene;gene=avtA;gene_biotype=protein_coding;locus_tag=SFV_RS21870;old_locus_tag=SFV_3968 NC_008258.1 Protein Homology CDS 4069587 4070840 . - 0 ID=cds4255;Parent=gene4353;Dbxref=Genbank:WP_000144361.1;Name=WP_000144361.1;Note=transaminase C%3B catalyzes transamination of alanine%2C valine%2C and 2-aminobutyrate with their respective 2-keto acids%3B also catalyzes terminal step in valine biosynthesis;gbkey=CDS;gene=avtA;product=valine--pyruvate aminotransferase;protein_id=WP_000144361.1;transl_table=11 NC_008258.1 RefSeq gene 4071018 4073048 . - . ID=gene4354;Name=malS;gbkey=Gene;gene=malS;gene_biotype=protein_coding;locus_tag=SFV_RS21875;old_locus_tag=SFV_3969 NC_008258.1 Protein Homology CDS 4071018 4073048 . - 0 ID=cds4256;Parent=gene4354;Dbxref=Genbank:WP_000761274.1;Name=WP_000761274.1;Note=periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB%3B hydrolyzes alpha-(1%2C4) glycosidic linkages%3B contains internal disulfide bonds;gbkey=CDS;gene=malS;product=alpha-amylase;protein_id=WP_000761274.1;transl_table=11 NC_008258.1 RefSeq gene 4073368 4074192 . + . ID=gene4355;Name=SFV_RS21880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21880;old_locus_tag=SFV_3970 NC_008258.1 Protein Homology CDS 4073368 4074192 . + 0 ID=cds4257;Parent=gene4355;Dbxref=Genbank:WP_001297957.1;Name=WP_001297957.1;gbkey=CDS;product=protein bax;protein_id=WP_001297957.1;transl_table=11 NC_008258.1 RefSeq gene 4074300 4075478 . - . ID=gene4356;Name=SFV_RS21885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21885;pseudo=true NC_008258.1 Protein Homology CDS 4074300 4075478 . - 0 ID=cds4258;Parent=gene4356;gbkey=CDS;product=XylR family transcriptional regulator;pseudo=true;transl_except=(pos:complement(4074948..4074950)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4075556 4076737 . - . ID=gene4357;Name=SFV_RS21890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21890;pseudo=true NC_008258.1 Protein Homology CDS 4075556 4076737 . - 0 ID=cds4259;Parent=gene4357;gbkey=CDS;product=sugar ABC transporter permease;pseudo=true;transl_except=(pos:complement(4076603..4076605)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4076715 4078256 . - . ID=gene4358;Name=SFV_RS21895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21895;old_locus_tag=SFV_3973 NC_008258.1 Protein Homology CDS 4076715 4078256 . - 0 ID=cds4260;Parent=gene4358;Dbxref=Genbank:WP_001146518.1;Name=WP_001146518.1;Note=with XylFH is part of the high affinity xylose ABC transporter;gbkey=CDS;product=xylose import ATP-binding protein XylG;protein_id=WP_001146518.1;transl_table=11 NC_008258.1 RefSeq gene 4078334 4079326 . - . ID=gene4359;Name=xylF;gbkey=Gene;gene=xylF;gene_biotype=protein_coding;locus_tag=SFV_RS21900;old_locus_tag=SFV_3974 NC_008258.1 Protein Homology CDS 4078334 4079326 . - 0 ID=cds4261;Parent=gene4359;Dbxref=Genbank:WP_001300957.1;Name=WP_001300957.1;Note=periplasmic substrate-binding component of the ATP-dependent xylose transport system%3B high affinity;gbkey=CDS;gene=xylF;product=D-xylose-binding periplasmic protein;protein_id=WP_001300957.1;transl_table=11 NC_008258.1 RefSeq gene 4079692 4080977 . + . ID=gene4360;Name=SFV_RS21905;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS21905;pseudo=true NC_008258.1 Protein Homology CDS 4079692 4080977 . + 0 ID=cds4262;Parent=gene4360;Note=catalyzes the interconversion of D-xylose to D-xylulose;exception=annotated by transcript or proteomic data;gbkey=CDS;product=xylose isomerase;pseudo=true;transl_except=(pos:4080367..4080369%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4081049 4082503 . + . ID=gene4361;Name=SFV_RS21910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21910;old_locus_tag=SFV_3976 NC_008258.1 Protein Homology CDS 4081049 4082503 . + 0 ID=cds4263;Parent=gene4361;Dbxref=Genbank:WP_000275378.1;Name=WP_000275378.1;Note=catalyzes the formation of D-xylulose-5-phosphate fro D-xylulose;gbkey=CDS;product=xylulokinase;protein_id=WP_000275378.1;transl_table=11 NC_008258.1 RefSeq gene 4082672 4083013 . + . ID=gene4362;Name=SFV_RS21915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21915;old_locus_tag=SFV_3977 NC_008258.1 Protein Homology CDS 4082672 4083013 . + 0 ID=cds4264;Parent=gene4362;Dbxref=Genbank:WP_000858193.1;Name=WP_000858193.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000858193.1;transl_table=11 NC_008258.1 RefSeq gene 4083059 4083496 . + . ID=gene4363;Name=SFV_RS21920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21920;old_locus_tag=SFV_3978 NC_008258.1 Protein Homology CDS 4083059 4083496 . + 0 ID=cds4265;Parent=gene4363;Dbxref=Genbank:WP_001296808.1;Name=WP_001296808.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296808.1;transl_table=11 NC_008258.1 RefSeq gene 4083538 4084533 . - . ID=gene4364;Name=SFV_RS21925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21925;old_locus_tag=SFV_3979 NC_008258.1 Protein Homology CDS 4083538 4084533 . - 0 ID=cds4266;Parent=gene4364;Dbxref=Genbank:WP_001182653.1;Name=WP_001182653.1;Note=involved in enterobacterial common antigen biosynthesis%3B catalyzes the addition of O-acetyl groups to the N-acetyl-D-glucosamine residues of the trisaccharide repeat units of the enterobacterial common antigen;gbkey=CDS;product=O-acetyltransferase;protein_id=WP_001182653.1;transl_table=11 NC_008258.1 RefSeq gene 4084707 4085006 . + . ID=gene4365;Name=SFV_RS21930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21930;old_locus_tag=SFV_3980 NC_008258.1 Protein Homology CDS 4084707 4085006 . + 0 ID=cds4267;Parent=gene4365;Dbxref=Genbank:WP_000980111.1;Name=WP_000980111.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000980111.1;transl_table=11 NC_008258.1 RefSeq gene 4085101 4086012 . + . ID=gene4366;Name=SFV_RS21935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21935;old_locus_tag=SFV_3981 NC_008258.1 Protein Homology CDS 4085101 4086012 . + 0 ID=cds4268;Parent=gene4366;Dbxref=Genbank:WP_001168544.1;Name=WP_001168544.1;gbkey=CDS;product=glycine--tRNA ligase subunit alpha;protein_id=WP_001168544.1;transl_table=11 NC_008258.1 RefSeq gene 4086022 4088091 . + . ID=gene4367;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=SFV_RS21940;old_locus_tag=SFV_3982 NC_008258.1 Protein Homology CDS 4086022 4088091 . + 0 ID=cds4269;Parent=gene4367;Dbxref=Genbank:WP_001291774.1;Name=WP_001291774.1;Note=glycine--tRNA ligase beta chain%3B glyS%3B class II aminoacyl tRNA synthetase%3B tetramer of alpha(2)beta(2)%3B catalyzes a two-step reaction%3B first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP%3B second by transfer of the aminoacyl-adenylate to its tRNA;gbkey=CDS;gene=glyS;product=glycine--tRNA ligase subunit beta;protein_id=WP_001291774.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4088128 4088905 . + . ID=id641;gbkey=repeat_region NC_008258.1 RefSeq region 4088134 4088901 . - . ID=id642;gbkey=mobile_element NC_008258.1 RefSeq gene 4088149 4088544 . - . ID=gene4368;Name=SFV_RS21945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21945 NC_008258.1 Protein Homology CDS 4088149 4088544 . - 0 ID=cds4270;Parent=gene4368;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 4088571 4088795 . - . ID=gene4369;Name=SFV_RS21950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21950 NC_008258.1 Protein Homology CDS 4088571 4088795 . - 0 ID=cds4271;Parent=gene4369;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4089067 4089363 . + . ID=gene4370;Name=SFV_RS21955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21955;old_locus_tag=SFV_3985 NC_008258.1 Protein Homology CDS 4089067 4089363 . + 0 ID=cds4272;Parent=gene4370;Dbxref=Genbank:WP_000576411.1;Name=WP_000576411.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000576411.1;transl_table=11 NC_008258.1 RefSeq gene 4089388 4092501 . + . ID=gene4371;Name=SFV_RS21960;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21960;old_locus_tag=SFV_3986 NC_008258.1 Protein Homology CDS 4089388 4092501 . + 0 ID=cds4273;Parent=gene4371;Dbxref=Genbank:WP_000024859.1;Name=WP_000024859.1;gbkey=CDS;product=multidrug efflux RND transporter permease subunit;protein_id=WP_000024859.1;transl_table=11 NC_008258.1 RefSeq gene 4092864 4093592 . - . ID=gene4372;Name=SFV_RS21965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21965;old_locus_tag=SFV_3987 NC_008258.1 Protein Homology CDS 4092864 4093592 . - 0 ID=cds4274;Parent=gene4372;Dbxref=Genbank:WP_000149999.1;Name=WP_000149999.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000149999.1;transl_table=11 NC_008258.1 RefSeq gene 4093960 4094784 . - . ID=gene4373;Name=SFV_RS21970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21970;old_locus_tag=SFV_3988 NC_008258.1 Protein Homology CDS 4093960 4094784 . - 0 ID=cds4275;Parent=gene4373;Dbxref=Genbank:WP_001191060.1;Name=WP_001191060.1;Note=regulates genes in response to acid and/or during stationary phase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001191060.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4095150 4096521 . + . ID=id643;gbkey=repeat_region NC_008258.1 RefSeq gene 4095154 4096554 . - . ID=gene4374;Name=SFV_RS21975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21975;old_locus_tag=SFV_3989 NC_008258.1 Protein Homology CDS 4095154 4096554 . - 0 ID=cds4276;Parent=gene4374;Dbxref=Genbank:WP_000372181.1;Name=WP_000372181.1;gbkey=CDS;product=glutamate decarboxylase;protein_id=WP_000372181.1;transl_table=11 NC_008258.1 RefSeq gene 4096765 4098162 . - . ID=gene4375;Name=SFV_RS21980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21980;old_locus_tag=SFV_3990 NC_008258.1 Protein Homology CDS 4096765 4098162 . - 0 ID=cds4277;Parent=gene4375;Dbxref=Genbank:WP_000784828.1;Name=WP_000784828.1;gbkey=CDS;product=cytochrome C peroxidase;protein_id=WP_000784828.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4098202 4098976 . + . ID=id644;gbkey=repeat_region NC_008258.1 RefSeq region 4098206 4098973 . - . ID=id645;gbkey=mobile_element NC_008258.1 RefSeq gene 4098221 4098616 . - . ID=gene4376;Name=SFV_RS21985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21985;old_locus_tag=SFV_3991 NC_008258.1 Protein Homology CDS 4098221 4098616 . - 0 ID=cds4278;Parent=gene4376;Dbxref=Genbank:WP_000634384.1;Name=WP_000634384.1;gbkey=CDS;product=Insertion element IS1 protein InsB;protein_id=WP_000634384.1;transl_table=11 NC_008258.1 RefSeq gene 4098643 4098867 . - . ID=gene4377;Name=SFV_RS24535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24535 NC_008258.1 Protein Homology CDS 4098643 4098867 . - 0 ID=cds4279;Parent=gene4377;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4099227 4099526 . + . ID=gene4378;Name=SFV_RS21990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21990;old_locus_tag=SFV_3993 NC_008258.1 Protein Homology CDS 4099227 4099526 . + 0 ID=cds4280;Parent=gene4378;Dbxref=Genbank:WP_001154414.1;Name=WP_001154414.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001154414.1;transl_table=11 NC_008258.1 RefSeq gene 4099553 4099981 . + . ID=gene4379;Name=SFV_RS21995;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS21995;old_locus_tag=SFV_3994 NC_008258.1 Protein Homology CDS 4099553 4099981 . + 0 ID=cds4281;Parent=gene4379;Dbxref=Genbank:WP_000323557.1;Name=WP_000323557.1;Note=with UspC and Usp E is involved in resistance to UV radiation;gbkey=CDS;product=universal stress protein D;protein_id=WP_000323557.1;transl_table=11 NC_008258.1 RefSeq gene 4099986 4100732 . - . ID=gene4380;Name=SFV_RS22000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22000;old_locus_tag=SFV_3995 NC_008258.1 Protein Homology CDS 4099986 4100732 . - 0 ID=cds4282;Parent=gene4380;Dbxref=Genbank:WP_000796320.1;Name=WP_000796320.1;gbkey=CDS;product=ferredoxin--NADP reductase;protein_id=WP_000796320.1;transl_table=11 NC_008258.1 RefSeq gene 4100829 4101839 . - . ID=gene4381;Name=SFV_RS22005;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22005;old_locus_tag=SFV_3996 NC_008258.1 Protein Homology CDS 4100829 4101839 . - 0 ID=cds4283;Parent=gene4381;Dbxref=Genbank:WP_001250644.1;Name=WP_001250644.1;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_001250644.1;transl_table=11 NC_008258.1 RefSeq gene 4102069 4103559 . - . ID=gene4382;Name=glpK;gbkey=Gene;gene=glpK;gene_biotype=protein_coding;locus_tag=SFV_RS22010;old_locus_tag=SFV_3997 NC_008258.1 Protein Homology CDS 4102069 4103559 . - 0 ID=cds4284;Parent=gene4382;Dbxref=Genbank:WP_029208390.1;Name=WP_029208390.1;Note=Converts glycerol and ADP to glycerol-3-phosphate and ADP;gbkey=CDS;gene=glpK;product=glycerol kinase;protein_id=WP_029208390.1;transl_table=11 NC_008258.1 RefSeq gene 4103599 4104444 . - . ID=gene4383;Name=SFV_RS22015;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22015;pseudo=true NC_008258.1 Protein Homology CDS 4103599 4104444 . - 0 ID=cds4285;Parent=gene4383;Note=involved in the transport of glycerol into the cell;gbkey=CDS;product=glycerol uptake facilitator GlpF;pseudo=true;transl_except=(pos:complement(4103800..4103802)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4104876 4105115 . + . ID=gene4384;Name=SFV_RS22020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22020;old_locus_tag=SFV_3999 NC_008258.1 Protein Homology CDS 4104876 4105115 . + 0 ID=cds4286;Parent=gene4384;Dbxref=Genbank:WP_001295521.1;Name=WP_001295521.1;Note=interacts with FisZ and is necessary for Z-ring formation;gbkey=CDS;product=cell division protein ZapB;protein_id=WP_001295521.1;transl_table=11 NC_008258.1 RefSeq gene 4105200 4105685 . - . ID=gene4385;Name=SFV_RS22025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22025;old_locus_tag=SFV_4000 NC_008258.1 Protein Homology CDS 4105200 4105685 . - 0 ID=cds4287;Parent=gene4385;Dbxref=Genbank:WP_000872911.1;Name=WP_000872911.1;Note=regulator of RNase E%3B increases half-life and abundance of RNAs%3B interacts with RNase E possibly inhibiting catalytic activity;gbkey=CDS;product=ribonuclease E activity regulator RraA;protein_id=WP_000872911.1;transl_table=11 NC_008258.1 RefSeq gene 4105778 4106704 . - . ID=gene4386;Name=SFV_RS22030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22030;old_locus_tag=SFV_4001 NC_008258.1 Protein Homology CDS 4105778 4106704 . - 0 ID=cds4288;Parent=gene4386;Dbxref=Genbank:WP_005106134.1;Name=WP_005106134.1;Note=catalyzes the formation of dimethylmenaquinone from 1%2C4-dihydroxy-2-naphthoate and octaprenyl diphosphate;gbkey=CDS;product=1%2C4-dihydroxy-2-naphthoate octaprenyltransferase;protein_id=WP_005106134.1;transl_table=11 NC_008258.1 RefSeq gene 4106771 4108102 . - . ID=gene4387;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=SFV_RS22035;old_locus_tag=SFV_4002 NC_008258.1 Protein Homology CDS 4106771 4108102 . - 0 ID=cds4289;Parent=gene4387;Dbxref=Genbank:WP_001293341.1;Name=WP_001293341.1;Note=heat shock protein involved in degradation of misfolded proteins;gbkey=CDS;gene=hslU;product=ATP-dependent protease ATPase subunit HslU;protein_id=WP_001293341.1;transl_table=11 NC_008258.1 RefSeq gene 4108112 4108642 . - . ID=gene4388;Name=SFV_RS22040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22040;old_locus_tag=SFV_4003 NC_008258.1 Protein Homology CDS 4108112 4108642 . - 0 ID=cds4290;Parent=gene4388;Dbxref=Genbank:WP_000208242.1;Name=WP_000208242.1;gbkey=CDS;product=ATP-dependent protease subunit HslV;protein_id=WP_000208242.1;transl_table=11 NC_008258.1 RefSeq gene 4108735 4109589 . - . ID=gene4389;Name=SFV_RS22045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22045;old_locus_tag=SFV_4004 NC_008258.1 Protein Homology CDS 4108735 4109589 . - 0 ID=cds4291;Parent=gene4389;Dbxref=Genbank:WP_001296624.1;Name=WP_001296624.1;gbkey=CDS;product=cell division protein FtsN;protein_id=WP_001296624.1;transl_table=11 NC_008258.1 RefSeq gene 4109786 4110748 . - . ID=gene4390;Name=SFV_RS22050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22050;old_locus_tag=SFV_4005 NC_008258.1 Protein Homology CDS 4109786 4110748 . - 0 ID=cds4292;Parent=gene4390;Dbxref=Genbank:WP_005106138.1;Name=WP_005106138.1;Note=negatively controls the transcription initiation of genes such as deoCABD%2C udp%2C and cdd encoding catabolizing enzymes and nupC%2C nupG%2C and tsx encoding transporting and pore-forming proteins;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005106138.1;transl_table=11 NC_008258.1 RefSeq gene 4110864 4113062 . - . ID=gene4391;Name=SFV_RS22055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22055;old_locus_tag=SFV_4006 NC_008258.1 Protein Homology CDS 4110864 4113062 . - 0 ID=cds4293;Parent=gene4391;Dbxref=Genbank:WP_005050440.1;Name=WP_005050440.1;Note=binding of PriA to forked DNA starts the assembly of the primosome%2C also possesses 3'-5' helicase activity;gbkey=CDS;product=primosome assembly protein PriA;protein_id=WP_005050440.1;transl_table=11 NC_008258.1 RefSeq gene 4113265 4113477 . + . ID=gene4392;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=SFV_RS22060 NC_008258.1 Protein Homology CDS 4113265 4113477 . + 0 ID=cds4294;Parent=gene4392;Dbxref=Genbank:WP_000710769.1;Name=WP_000710769.1;Note=RpmE%3B there appears to be two types of ribosomal proteins L31 in bacterial genomes%3B some contain a CxxC motif while others do not%3B Bacillus subtilis has both types%3B the proteins in this cluster have the CXXC motif%3B RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth%3B expression of ytiA is controlled by a zinc-specific transcriptional repressor%3B RpmE contains one zinc ion and a CxxC motif is responsible for this binding%3B forms an RNP particle along with proteins L5%2C L18%2C and L25 and 5S rRNA%3B found crosslinked to L2 and L25 and EF-G%3B may be near the peptidyltransferase site of the 50S ribosome;gbkey=CDS;gene=rpmE;product=50S ribosomal protein L31;protein_id=WP_000710769.1;transl_table=11 NC_008258.1 RefSeq gene 4113538 4114146 . - . ID=gene4393;Name=SFV_RS22065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22065;old_locus_tag=SFV_4007 NC_008258.1 Protein Homology CDS 4113538 4114146 . - 0 ID=cds4295;Parent=gene4393;Dbxref=Genbank:WP_000797352.1;Name=WP_000797352.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000797352.1;transl_table=11 NC_008258.1 RefSeq gene 4114330 4114647 . - . ID=gene4394;Name=SFV_RS22070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22070;old_locus_tag=SFV_4008 NC_008258.1 Protein Homology CDS 4114330 4114647 . - 0 ID=cds4296;Parent=gene4394;Dbxref=Genbank:WP_000852812.1;Name=WP_000852812.1;Note=when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis;gbkey=CDS;product=met repressor;protein_id=WP_000852812.1;transl_table=11 NC_008258.1 RefSeq gene 4114924 4116084 . + . ID=gene4395;Name=SFV_RS22075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22075;old_locus_tag=SFV_4009 NC_008258.1 Protein Homology CDS 4114924 4116084 . + 0 ID=cds4297;Parent=gene4395;Dbxref=Genbank:WP_005050443.1;Name=WP_005050443.1;Note=catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine;gbkey=CDS;product=cystathionine gamma-synthase;protein_id=WP_005050443.1;transl_table=11 NC_008258.1 RefSeq gene 4116087 4118519 . + . ID=gene4396;Name=metL;gbkey=Gene;gene=metL;gene_biotype=protein_coding;gene_synonym=metM;locus_tag=SFV_RS22080;old_locus_tag=SFV_4010 NC_008258.1 Protein Homology CDS 4116087 4118519 . + 0 ID=cds4298;Parent=gene4396;Dbxref=Genbank:WP_000110744.1;Name=WP_000110744.1;Note=multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine%3B functions in a number of amino acid biosynthetic pathways;gbkey=CDS;gene=metL;product=bifunctional aspartate kinase II/homoserine dehydrogenase II;protein_id=WP_000110744.1;transl_table=11 NC_008258.1 RefSeq gene 4118658 4118792 . - . ID=gene4397;Name=SFV_RS22085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22085 NC_008258.1 Protein Homology CDS 4118658 4118792 . - 0 ID=cds4299;Parent=gene4397;Dbxref=Genbank:WP_000660586.1;Name=WP_000660586.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000660586.1;transl_table=11 NC_008258.1 RefSeq gene 4118868 4119758 . + . ID=gene4398;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=SFV_RS22090;old_locus_tag=SFV_4011 NC_008258.1 Protein Homology CDS 4118868 4119758 . + 0 ID=cds4300;Parent=gene4398;Dbxref=Genbank:WP_000007523.1;Name=WP_000007523.1;Note=MTHFR%3B catalyzes NADH-linked reduction of 5%2C10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor;gbkey=CDS;gene=metF;product=5%2C10-methylenetetrahydrofolate reductase;protein_id=WP_000007523.1;transl_table=11 NC_008258.1 RefSeq gene 4120087 4122267 . + . ID=gene4399;Name=SFV_RS22095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22095;old_locus_tag=SFV_4012 NC_008258.1 Protein Homology CDS 4120087 4122267 . + 0 ID=cds4301;Parent=gene4399;Dbxref=Genbank:WP_001297636.1;Name=WP_001297636.1;gbkey=CDS;product=catalase/hydroperoxidase HPI(I);protein_id=WP_001297636.1;transl_table=11 NC_008258.1 RefSeq gene 4122361 4123266 . + . ID=gene4400;Name=SFV_RS22100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22100;old_locus_tag=SFV_4013 NC_008258.1 Protein Homology CDS 4122361 4123266 . + 0 ID=cds4302;Parent=gene4400;Dbxref=Genbank:WP_001577485.1;Name=WP_001577485.1;gbkey=CDS;product=permease;protein_id=WP_001577485.1;transl_table=11 NC_008258.1 RefSeq gene 4123293 4123910 . - . ID=gene4401;Name=SFV_RS22105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22105;old_locus_tag=SFV_4014 NC_008258.1 Protein Homology CDS 4123293 4123910 . - 0 ID=cds4303;Parent=gene4401;Dbxref=Genbank:WP_000647878.1;Name=WP_000647878.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000647878.1;transl_table=11 NC_008258.1 RefSeq gene 4124022 4124141 . - . ID=gene4402;Name=SFV_RS22110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22110 NC_008258.1 Protein Homology CDS 4124022 4124141 . - 0 ID=cds4304;Parent=gene4402;Dbxref=Genbank:WP_001442985.1;Name=WP_001442985.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001442985.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4124041 4124148 . + . ID=id646;gbkey=repeat_region NC_008258.1 RefSeq gene 4124185 4125286 . - . ID=gene4403;Name=gldA;gbkey=Gene;gene=gldA;gene_biotype=pseudogene;locus_tag=SFV_RS22115;pseudo=true NC_008258.1 Protein Homology CDS 4124185 4125286 . - 0 ID=cds4305;Parent=gene4403;Note=forms dimers and octamers%3B involved in conversion of glycerol to dihydroxy-acetone;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=gldA;product=glycerol dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4125297 4125497 . - . ID=gene4404;Name=SFV_RS22120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22120 NC_008258.1 Protein Homology CDS 4125297 4125497 . - 0 ID=cds4306;Parent=gene4404;Dbxref=Genbank:WP_000543267.1;Name=WP_000543267.1;gbkey=CDS;product=fructose-bisphosphate aldolase;protein_id=WP_000543267.1;transl_table=11 NC_008258.1 RefSeq gene 4125654 4125959 . - . ID=gene4405;Name=SFV_RS22125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22125 NC_008258.1 Protein Homology CDS 4125654 4125959 . - 0 ID=cds4307;Parent=gene4405;Dbxref=Genbank:WP_000424834.1;Name=WP_000424834.1;gbkey=CDS;product=transaldolase;protein_id=WP_000424834.1;transl_table=11 NC_008258.1 RefSeq gene 4125971 4128472 . - . ID=gene4406;Name=SFV_RS22130;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22130;pseudo=true NC_008258.1 Protein Homology CDS 4125971 4128472 . - 0 ID=cds4308;Parent=gene4406;Note=Phosphotransferase system%2C enzyme I%3B transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein HPr%3B HPr transfers the phosphoryl group to subunit A%3B subunit IIA transfers a phosphoryl group to subunit IIB%3B subunit IIB transfers the phosphoryl group to the substrate%3B part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS)%2C a major carbohydrate active-transport system;gbkey=CDS;product=PTS fructose transporter subunit IIA;pseudo=true;transl_except=(pos:complement(4127369..4127371)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4128781 4129860 . + . ID=gene4407;Name=SFV_RS22135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22135;old_locus_tag=SFV_4018 NC_008258.1 Protein Homology CDS 4128781 4129860 . + 0 ID=cds4309;Parent=gene4407;Dbxref=Genbank:WP_001004442.1;Name=WP_001004442.1;gbkey=CDS;product=PTS fructose transporter subunit IIC;protein_id=WP_001004442.1;transl_table=11 NC_008258.1 RefSeq gene 4129875 4130195 . + . ID=gene4408;Name=SFV_RS22140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22140;old_locus_tag=SFV_4019 NC_008258.1 Protein Homology CDS 4129875 4130195 . + 0 ID=cds4310;Parent=gene4408;Dbxref=Genbank:WP_000161265.1;Name=WP_000161265.1;Note=FrwB with FrwC%2C FrwD and PtsA forms a PEP-dependent sugar phosphotransferase system (PTS) permease which may phosphorylate and transport sugars into the cell%3B cytoplasmic protein that interacts with complex EIIA%3B contains the second phosphorylation site of the PTS;gbkey=CDS;product=fructose-like phosphotransferase enzyme IIB component 2;protein_id=WP_000161265.1;transl_table=11 NC_008258.1 RefSeq gene 4130246 4132543 . + . ID=gene4409;Name=pflD;gbkey=Gene;gene=pflD;gene_biotype=protein_coding;locus_tag=SFV_RS22145;old_locus_tag=SFV_4020 NC_008258.1 Protein Homology CDS 4130246 4132543 . + 0 ID=cds4311;Parent=gene4409;Dbxref=Genbank:WP_000184806.1;Name=WP_000184806.1;Note=involved in production of D-lactate from glucose under microaerobic conditions%3B cytoplasmic protein;gbkey=CDS;gene=pflD;product=formate acetyltransferase;protein_id=WP_000184806.1;transl_table=11 NC_008258.1 RefSeq gene 4132509 4133387 . + . ID=gene4410;Name=SFV_RS22150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22150;old_locus_tag=SFV_4021 NC_008258.1 Protein Homology CDS 4132509 4133387 . + 0 ID=cds4312;Parent=gene4410;Dbxref=Genbank:WP_000204101.1;Name=WP_000204101.1;gbkey=CDS;product=pyruvate formate lyase II activase;protein_id=WP_000204101.1;transl_table=11 NC_008258.1 RefSeq gene 4133389 4133730 . + . ID=gene4411;Name=SFV_RS22155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22155;old_locus_tag=SFV_4022 NC_008258.1 Protein Homology CDS 4133389 4133730 . + 0 ID=cds4313;Parent=gene4411;Dbxref=Genbank:WP_000323849.1;Name=WP_000323849.1;Note=FrwD with FrwB%2C FrwC and PtsA forms a PEP-dependent sugar phosphotransferase system permease which may phosphorylate and transport sugars into the cell%3B phosphorylated by EIIA%3B FrwB homolog;gbkey=CDS;product=PTS fructose transporter subunit IIB;protein_id=WP_000323849.1;transl_table=11 NC_008258.1 RefSeq gene 4133717 4134568 . - . ID=gene4412;Name=SFV_RS22160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22160;old_locus_tag=SFV_4023 NC_008258.1 Protein Homology CDS 4133717 4134568 . - 0 ID=cds4314;Parent=gene4412;Dbxref=Genbank:WP_000274623.1;Name=WP_000274623.1;gbkey=CDS;product=AraC family transcriptional regulator;protein_id=WP_000274623.1;transl_table=11 NC_008258.1 RefSeq gene 4134717 4136450 . - . ID=gene4413;Name=SFV_RS22165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22165;old_locus_tag=SFV_4024 NC_008258.1 Protein Homology CDS 4134717 4136450 . - 0 ID=cds4315;Parent=gene4413;Dbxref=Genbank:WP_000556326.1;Name=WP_000556326.1;gbkey=CDS;product=membrane protein;protein_id=WP_000556326.1;transl_table=11 NC_008258.1 RefSeq gene 4136633 4139284 . - . ID=gene4414;Name=SFV_RS22170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22170;old_locus_tag=SFV_4025 NC_008258.1 Protein Homology CDS 4136633 4139284 . - 0 ID=cds4316;Parent=gene4414;Dbxref=Genbank:WP_001005571.1;Name=WP_001005571.1;Note=catalyzes the formation of oxaloacetate from phosphoenolpyruvate;gbkey=CDS;product=phosphoenolpyruvate carboxylase;protein_id=WP_001005571.1;transl_table=11 NC_008258.1 RefSeq gene 4139636 4140787 . - . ID=gene4415;Name=SFV_RS22175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22175;old_locus_tag=SFV_4026 NC_008258.1 Protein Homology CDS 4139636 4140787 . - 0 ID=cds4317;Parent=gene4415;Dbxref=Genbank:WP_005071452.1;Name=WP_005071452.1;Note=catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis;gbkey=CDS;product=acetylornithine deacetylase;protein_id=WP_005071452.1;transl_table=11 NC_008258.1 RefSeq gene 4140941 4141945 . + . ID=gene4416;Name=SFV_RS22180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22180;old_locus_tag=SFV_4027 NC_008258.1 Protein Homology CDS 4140941 4141945 . + 0 ID=cds4318;Parent=gene4416;Dbxref=Genbank:WP_000935388.1;Name=WP_000935388.1;gbkey=CDS;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=WP_000935388.1;transl_table=11 NC_008258.1 RefSeq gene 4141956 4142729 . + . ID=gene4417;Name=SFV_RS22185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22185;old_locus_tag=SFV_4028 NC_008258.1 Protein Homology CDS 4141956 4142729 . + 0 ID=cds4319;Parent=gene4417;Dbxref=Genbank:WP_024260321.1;Name=WP_024260321.1;gbkey=CDS;product=acetylglutamate kinase;protein_id=WP_024260321.1;transl_table=11 NC_008258.1 RefSeq gene 4142790 4144163 . + . ID=gene4418;Name=SFV_RS22190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22190;old_locus_tag=SFV_4029 NC_008258.1 Protein Homology CDS 4142790 4144163 . + 0 ID=cds4320;Parent=gene4418;Dbxref=Genbank:WP_001230091.1;Name=WP_001230091.1;Note=catalyzes the formation of arginine from (N-L-arginino)succinate;gbkey=CDS;product=argininosuccinate lyase;protein_id=WP_001230091.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4144273 4145710 . + . ID=id647;gbkey=repeat_region NC_008258.1 RefSeq region 4144280 4145707 . + . ID=id648;gbkey=mobile_element NC_008258.1 RefSeq gene 4144365 4145693 . + . ID=gene4419;Name=SFV_RS22195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22195;old_locus_tag=SFV_4030 NC_008258.1 Protein Homology CDS 4144365 4145693 . + 0 ID=cds4321;Parent=gene4419;Dbxref=Genbank:WP_000547150.1;Name=WP_000547150.1;gbkey=CDS;product=transposase;protein_id=WP_000547150.1;transl_table=11 NC_008258.1 RefSeq gene 4146101 4147315 . + . ID=gene4420;Name=SFV_RS22200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22200;old_locus_tag=SFV_4031 NC_008258.1 Protein Homology CDS 4146101 4147315 . + 0 ID=cds4322;Parent=gene4420;Dbxref=Genbank:WP_000690940.1;Name=WP_000690940.1;Note=starvation-sensing protein%3B maybe involved in homoserine lactone degradation;gbkey=CDS;product=bifunctional D-altronate/D-mannonate dehydratase;protein_id=WP_000690940.1;transl_table=11 NC_008258.1 RefSeq gene 4147382 4147774 . + . ID=gene4421;Name=SFV_RS22205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22205 NC_008258.1 Protein Homology CDS 4147382 4147774 . + 0 ID=cds4323;Parent=gene4421;Dbxref=Genbank:WP_000382172.1;Name=WP_000382172.1;gbkey=CDS;product=photosystem I reaction center subunit VIII;protein_id=WP_000382172.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4147745 4148519 . + . ID=id649;gbkey=repeat_region NC_008258.1 RefSeq region 4147748 4148515 . + . ID=id650;gbkey=mobile_element NC_008258.1 RefSeq gene 4147997 4148500 . + . ID=gene4422;Name=SFV_RS22210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22210;old_locus_tag=SFV_4033 NC_008258.1 Protein Homology CDS 4147997 4148500 . + 0 ID=cds4324;Parent=gene4422;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 4148502 4149440 . + . ID=gene4423;Name=SFV_RS22215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22215 NC_008258.1 Protein Homology CDS 4148502 4149440 . + 0 ID=cds4325;Parent=gene4423;Dbxref=Genbank:WP_044024178.1;Name=WP_044024178.1;gbkey=CDS;product=L-galactonate transporter;protein_id=WP_044024178.1;transl_table=11 NC_008258.1 RefSeq gene 4149696 4150613 . + . ID=gene4424;Name=SFV_RS22220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22220;old_locus_tag=SFV_4034 NC_008258.1 Protein Homology CDS 4149696 4150613 . + 0 ID=cds4326;Parent=gene4424;Dbxref=Genbank:WP_001025932.1;Name=WP_001025932.1;Note=Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG%2C gor%2C ahpC%2C ahpF%2C oxyS%2C dps%2C fur and grxA;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001025932.1;transl_table=11 NC_008258.1 RefSeq gene 4150596 4151996 . - . ID=gene4425;Name=SFV_RS22225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22225;old_locus_tag=SFV_4035 NC_008258.1 Protein Homology CDS 4150596 4151996 . - 0 ID=cds4327;Parent=gene4425;Dbxref=Genbank:WP_001120815.1;Name=WP_001120815.1;Note=catalyzes the conversion of NADPH to NADH;gbkey=CDS;product=soluble pyridine nucleotide transhydrogenase;protein_id=WP_001120815.1;transl_table=11 NC_008258.1 RefSeq gene 4152320 4152967 . + . ID=gene4426;Name=SFV_RS22230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22230 NC_008258.1 Protein Homology CDS 4152320 4152967 . + 0 ID=cds4328;Parent=gene4426;Dbxref=Genbank:WP_001300495.1;Name=WP_001300495.1;Note=negatively controls the expression of fabA and fabB%2C genes involved in the unsaturated fatty acid biosynthesis;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001300495.1;transl_table=11 NC_008258.1 RefSeq gene 4152967 4153326 . + . ID=gene4427;Name=SFV_RS22235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22235;old_locus_tag=SFV_4037 NC_008258.1 Protein Homology CDS 4152967 4153326 . + 0 ID=cds4329;Parent=gene4427;Dbxref=Genbank:WP_000806414.1;Name=WP_000806414.1;gbkey=CDS;product=membrane protein;protein_id=WP_000806414.1;transl_table=11 NC_008258.1 RefSeq gene 4153366 4154466 . - . ID=gene4428;Name=SFV_RS22240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22240;old_locus_tag=SFV_4038 NC_008258.1 Protein Homology CDS 4153366 4154466 . - 0 ID=cds4330;Parent=gene4428;Dbxref=Genbank:WP_000187011.1;Name=WP_000187011.1;Note=catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs;gbkey=CDS;product=tRNA/tmRNA (uracil-C(5))-methyltransferase;protein_id=WP_000187011.1;transl_table=11 NC_008258.1 RefSeq gene 4154835 4156679 . + . ID=gene4429;Name=btuB;gbkey=Gene;gene=btuB;gene_biotype=protein_coding;locus_tag=SFV_RS22245;old_locus_tag=SFV_4039 NC_008258.1 Protein Homology CDS 4154835 4156679 . + 0 ID=cds4331;Parent=gene4429;Dbxref=Genbank:WP_000591338.1;Name=WP_000591338.1;Note=involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space;gbkey=CDS;gene=btuB;product=vitamin B12 transporter BtuB;protein_id=WP_000591338.1;transl_table=11 NC_008258.1 RefSeq gene 4156693 4157481 . + . ID=gene4430;Name=SFV_RS22250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22250;old_locus_tag=SFV_4040 NC_008258.1 Protein Homology CDS 4156693 4157481 . + 0 ID=cds4332;Parent=gene4430;Dbxref=Genbank:WP_001295508.1;Name=WP_001295508.1;Note=converts L-glutamate to D-glutamate%2C a component of peptidoglycan;gbkey=CDS;product=glutamate racemase;protein_id=WP_001295508.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4157495 4162879 . + . ID=id651;gbkey=repeat_region NC_008258.1 RefSeq gene 4157853 4159408 . + . ID=gene4431;Name=SFV_RS22255;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS22255;old_locus_tag=SFV_4041 NC_008258.1 RefSeq rRNA 4157853 4159408 . + . ID=rna98;Parent=gene4431;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 4157853 4159408 . + . ID=id652;Parent=rna98;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq gene 4159482 4159557 . + . ID=gene4432;Name=SFV_RS22260;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS22260;old_locus_tag=SFV_4042 NC_008258.1 tRNAscan-SE tRNA 4159482 4159557 . + . ID=rna99;Parent=gene4432;anticodon=(pos:4159516..4159518);gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 4159482 4159557 . + . ID=id653;Parent=rna99;anticodon=(pos:4159516..4159518);gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 4159742 4162666 . + . ID=gene4433;Name=SFV_RS22265;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS22265;old_locus_tag=SFV_4043 NC_008258.1 RefSeq rRNA 4159742 4162666 . + . ID=rna100;Parent=gene4433;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 4159742 4162666 . + . ID=id654;Parent=rna100;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 4162750 4162865 . + . ID=gene4434;Name=SFV_RS22270;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS22270;old_locus_tag=SFV_4044 NC_008258.1 cmsearch rRNA 4162750 4162865 . + . ID=rna101;Parent=gene4434;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 4162750 4162865 . + . ID=id655;Parent=rna101;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 4162994 4164022 . + . ID=gene4435;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=SFV_RS22275;old_locus_tag=SFV_4045 NC_008258.1 Protein Homology CDS 4162994 4164022 . + 0 ID=cds4333;Parent=gene4435;Dbxref=Genbank:WP_001016669.1;Name=WP_001016669.1;Note=catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis;gbkey=CDS;gene=murB;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=WP_001016669.1;transl_table=11 NC_008258.1 RefSeq gene 4164019 4164984 . + . ID=gene4436;Name=SFV_RS22280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22280;old_locus_tag=SFV_4046 NC_008258.1 Protein Homology CDS 4164019 4164984 . + 0 ID=cds4334;Parent=gene4436;Dbxref=Genbank:WP_000654605.1;Name=WP_000654605.1;Note=catalyzes the formation of biotinyl-5'-AMP%2C also acts as a transcriptional repressor of the biotin operon;gbkey=CDS;product=bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor;protein_id=WP_000654605.1;transl_table=11 NC_008258.1 RefSeq gene 4165013 4165969 . - . ID=gene4437;Name=SFV_RS22285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22285;old_locus_tag=SFV_4047 NC_008258.1 Protein Homology CDS 4165013 4165969 . - 0 ID=cds4335;Parent=gene4437;Dbxref=Genbank:WP_032155837.1;Name=WP_032155837.1;gbkey=CDS;product=type I pantothenate kinase;protein_id=WP_032155837.1;transl_table=11 NC_008258.1 RefSeq gene 4166150 4166305 . - . ID=gene4438;Name=SFV_RS22290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22290 NC_008258.1 Protein Homology CDS 4166150 4166305 . - 0 ID=cds4336;Parent=gene4438;Dbxref=Genbank:WP_011110634.1;Name=WP_011110634.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011110634.1;transl_table=11 NC_008258.1 RefSeq gene 4166325 4166400 . + . ID=gene4439;Name=SFV_RS22295;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS22295;old_locus_tag=SFV_4048 NC_008258.1 tRNAscan-SE tRNA 4166325 4166400 . + . ID=rna102;Parent=gene4439;anticodon=(pos:4166358..4166360);gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 4166325 4166400 . + . ID=id656;Parent=rna102;anticodon=(pos:4166358..4166360);gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 4166409 4166493 . + . ID=gene4440;Name=SFV_RS22300;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS22300;old_locus_tag=SFV_4049 NC_008258.1 tRNAscan-SE tRNA 4166409 4166493 . + . ID=rna103;Parent=gene4440;anticodon=(pos:4166443..4166445);gbkey=tRNA;product=tRNA-Tyr NC_008258.1 tRNAscan-SE exon 4166409 4166493 . + . ID=id657;Parent=rna103;anticodon=(pos:4166443..4166445);gbkey=tRNA;product=tRNA-Tyr NC_008258.1 RefSeq gene 4166610 4166684 . + . ID=gene4441;Name=SFV_RS22305;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS22305;old_locus_tag=SFV_4050 NC_008258.1 tRNAscan-SE tRNA 4166610 4166684 . + . ID=rna104;Parent=gene4441;anticodon=(pos:4166643..4166645);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 4166610 4166684 . + . ID=id658;Parent=rna104;anticodon=(pos:4166643..4166645);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 4166691 4166766 . + . ID=gene4442;Name=SFV_RS22310;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS22310;old_locus_tag=SFV_4051 NC_008258.1 tRNAscan-SE tRNA 4166691 4166766 . + . ID=rna105;Parent=gene4442;anticodon=(pos:4166724..4166726);gbkey=tRNA;product=tRNA-Thr NC_008258.1 tRNAscan-SE exon 4166691 4166766 . + . ID=id659;Parent=rna105;anticodon=(pos:4166724..4166726);gbkey=tRNA;product=tRNA-Thr NC_008258.1 RefSeq gene 4166881 4168065 . + . ID=gene4443;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=SFV_RS22315;old_locus_tag=SFV_4052 NC_008258.1 Protein Homology CDS 4166881 4168065 . + 0 ID=cds4337;Parent=gene4443;Dbxref=Genbank:WP_000031784.1;Name=WP_000031784.1;Note=EF-Tu%3B promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis%3B when the tRNA anticodon matches the mRNA codon%2C GTP hydrolysis results%3B the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts%3B many prokaryotes have two copies of the gene encoding EF-Tu;gbkey=CDS;gene=tuf;product=translation elongation factor EF-Tu 2;protein_id=WP_000031784.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4166882 4168067 . + . ID=id660;gbkey=repeat_region;gene=tuf NC_008258.1 RefSeq gene 4168295 4168678 . + . ID=gene4444;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=SFV_RS22320;old_locus_tag=SFV_4053 NC_008258.1 Protein Homology CDS 4168295 4168678 . + 0 ID=cds4338;Parent=gene4444;Dbxref=Genbank:WP_001275696.1;Name=WP_001275696.1;Note=forms a complex with SecY and SecG%3B SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane%2C a process driven by ATP and a proton-motive force;gbkey=CDS;gene=secE;product=preprotein translocase subunit SecE;protein_id=WP_001275696.1;transl_table=11 NC_008258.1 RefSeq gene 4168680 4169225 . + . ID=gene4445;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=SFV_RS22325;old_locus_tag=SFV_4054 NC_008258.1 Protein Homology CDS 4168680 4169225 . + 0 ID=cds4339;Parent=gene4445;Dbxref=Genbank:WP_001287516.1;Name=WP_001287516.1;Note=Modulates Rho-dependent transcription termination;gbkey=CDS;gene=nusG;product=transcription termination/antitermination protein NusG;protein_id=WP_001287516.1;transl_table=11 NC_008258.1 RefSeq gene 4169384 4169812 . + . ID=gene4446;Name=SFV_RS22330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22330;old_locus_tag=SFV_4055 NC_008258.1 Protein Homology CDS 4169384 4169812 . + 0 ID=cds4340;Parent=gene4446;Dbxref=Genbank:WP_001085926.1;Name=WP_001085926.1;gbkey=CDS;product=50S ribosomal protein L11;protein_id=WP_001085926.1;transl_table=11 NC_008258.1 RefSeq gene 4169816 4170520 . + . ID=gene4447;Name=SFV_RS22335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22335;old_locus_tag=SFV_4056 NC_008258.1 Protein Homology CDS 4169816 4170520 . + 0 ID=cds4341;Parent=gene4447;Dbxref=Genbank:WP_001096684.1;Name=WP_001096684.1;gbkey=CDS;product=50S ribosomal protein L1;protein_id=WP_001096684.1;transl_table=11 NC_008258.1 RefSeq gene 4170933 4171430 . + . ID=gene4448;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=SFV_RS22340;old_locus_tag=SFV_4057 NC_008258.1 Protein Homology CDS 4170933 4171430 . + 0 ID=cds4342;Parent=gene4448;Dbxref=Genbank:WP_001207201.1;Name=WP_001207201.1;Note=binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit;gbkey=CDS;gene=rplJ;product=50S ribosomal protein L10;protein_id=WP_001207201.1;transl_table=11 NC_008258.1 RefSeq gene 4171497 4171862 . + . ID=gene4449;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=SFV_RS22345;old_locus_tag=SFV_4058 NC_008258.1 Protein Homology CDS 4171497 4171862 . + 0 ID=cds4343;Parent=gene4449;Dbxref=Genbank:WP_000028878.1;Name=WP_000028878.1;Note=present in two forms%3B L12 is normal%2C while L7 is aminoacylated at the N-terminal serine%3B the only multicopy ribosomal protein%3B 4:1 ratio of L7/L12 per ribosome%3B two L12 dimers bind L10%3B critically important for translation efficiency and fidelity%3B stimulates GTPase activity of translation factors;gbkey=CDS;gene=rplL;product=50S ribosomal protein L7/L12;protein_id=WP_000028878.1;transl_table=11 NC_008258.1 RefSeq gene 4172182 4176210 . + . ID=gene4450;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=SFV_RS22350;old_locus_tag=SFV_4059 NC_008258.1 Protein Homology CDS 4172182 4176210 . + 0 ID=cds4344;Parent=gene4450;Dbxref=Genbank:WP_011587284.1;Name=WP_011587284.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates%3B beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme;gbkey=CDS;gene=rpoB;product=DNA-directed RNA polymerase subunit beta;protein_id=WP_011587284.1;transl_table=11 NC_008258.1 RefSeq gene 4176287 4180510 . + . ID=gene4451;Name=SFV_RS22355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22355;old_locus_tag=SFV_4060 NC_008258.1 Protein Homology CDS 4176287 4180510 . + 0 ID=cds4345;Parent=gene4451;Dbxref=Genbank:WP_000653955.1;Name=WP_000653955.1;Note=DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter;gbkey=CDS;product=DNA-directed RNA polymerase subunit beta';protein_id=WP_000653955.1;transl_table=11 NC_008258.1 RefSeq gene 4180752 4181885 . - . ID=gene4452;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=SFV_RS22360;old_locus_tag=SFV_4061 NC_008258.1 Protein Homology CDS 4180752 4181885 . - 0 ID=cds4346;Parent=gene4452;Dbxref=Genbank:WP_000847551.1;Name=WP_000847551.1;Note=in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS%3B with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine%2C cysteine and 1-deoxy-D-xylulose-5-phosphate%3B forms a complex with ThiG%3B contains an iron-sulfur center;gbkey=CDS;gene=thiH;product=thiamine biosynthesis protein ThiH;protein_id=WP_000847551.1;transl_table=11 NC_008258.1 RefSeq gene 4181882 4182652 . - . ID=gene4453;Name=SFV_RS22365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22365;old_locus_tag=SFV_4063 NC_008258.1 Protein Homology CDS 4181882 4182652 . - 0 ID=cds4347;Parent=gene4453;Dbxref=Genbank:WP_000944090.1;Name=WP_000944090.1;gbkey=CDS;product=thiazole synthase;protein_id=WP_000944090.1;transl_table=11 NC_008258.1 RefSeq gene 4182654 4182854 . - . ID=gene4454;Name=SFV_RS22370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22370;old_locus_tag=SFV_4062 NC_008258.1 Protein Homology CDS 4182654 4182854 . - 0 ID=cds4348;Parent=gene4454;Dbxref=Genbank:WP_001166232.1;Name=WP_001166232.1;Note=with ThiF%2C ThiG%2C and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate;gbkey=CDS;product=thiamine biosynthesis protein ThiS;protein_id=WP_001166232.1;transl_table=11 NC_008258.1 RefSeq gene 4182838 4183593 . - . ID=gene4455;Name=SFV_RS22375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22375;old_locus_tag=SFV_4064 NC_008258.1 Protein Homology CDS 4182838 4183593 . - 0 ID=cds4349;Parent=gene4455;Dbxref=Genbank:WP_000999749.1;Name=WP_000999749.1;Note=ATP-dependent adenylate transferase%2C transfers adenyl moiety to the MoeD subunit of molybdopterin synthase;gbkey=CDS;product=molybdopterin biosynthesis protein MoeB;protein_id=WP_000999749.1;transl_table=11 NC_008258.1 RefSeq gene 4183586 4184221 . - . ID=gene4456;Name=SFV_RS22380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22380;old_locus_tag=SFV_4065 NC_008258.1 Protein Homology CDS 4183586 4184221 . - 0 ID=cds4350;Parent=gene4456;Dbxref=Genbank:WP_000284600.1;Name=WP_000284600.1;Note=catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate;gbkey=CDS;product=thiamine-phosphate synthase;protein_id=WP_000284600.1;transl_table=11 NC_008258.1 RefSeq gene 4184221 4186116 . - . ID=gene4457;Name=SFV_RS22385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22385;old_locus_tag=SFV_4066 NC_008258.1 Protein Homology CDS 4184221 4186116 . - 0 ID=cds4351;Parent=gene4457;Dbxref=Genbank:WP_001276920.1;Name=WP_001276920.1;Note=catalyzes the formation of 4-amino-2-methyl-5-phosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole and S-adenosyl-L-methionine in thiamine biosynthesis;gbkey=CDS;product=phosphomethylpyrimidine synthase;protein_id=WP_001276920.1;transl_table=11 NC_008258.1 RefSeq gene 4186350 4186826 . - . ID=gene4458;Name=SFV_RS22390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22390;old_locus_tag=SFV_4067 NC_008258.1 Protein Homology CDS 4186350 4186826 . - 0 ID=cds4352;Parent=gene4458;Dbxref=Genbank:WP_000934302.1;Name=WP_000934302.1;Note=binds specifically to the major sigma factor sigma 70%3B active in stationary phase;gbkey=CDS;product=regulator of sigma D;protein_id=WP_000934302.1;transl_table=11 NC_008258.1 RefSeq gene 4186921 4187694 . + . ID=gene4459;Name=nudC;gbkey=Gene;gene=nudC;gene_biotype=protein_coding;locus_tag=SFV_RS22395;old_locus_tag=SFV_4068 NC_008258.1 Protein Homology CDS 4186921 4187694 . + 0 ID=cds4353;Parent=gene4459;Dbxref=Genbank:WP_000373929.1;Name=WP_000373929.1;Note=can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH%3B requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates;gbkey=CDS;gene=nudC;product=NADH pyrophosphatase;protein_id=WP_000373929.1;transl_table=11 NC_008258.1 RefSeq gene 4187734 4188798 . + . ID=gene4460;Name=hemE;gbkey=Gene;gene=hemE;gene_biotype=protein_coding;locus_tag=SFV_RS22400;old_locus_tag=SFV_4069 NC_008258.1 Protein Homology CDS 4187734 4188798 . + 0 ID=cds4354;Parent=gene4460;Dbxref=Genbank:WP_000137636.1;Name=WP_000137636.1;Note=catalyzes the formation of coproporphyrinogen from uroporphyrinogen III;gbkey=CDS;gene=hemE;product=uroporphyrinogen decarboxylase;protein_id=WP_000137636.1;transl_table=11 NC_008258.1 RefSeq gene 4188955 4189626 . + . ID=gene4461;Name=SFV_RS22405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22405;old_locus_tag=SFV_4070 NC_008258.1 Protein Homology CDS 4188955 4189626 . + 0 ID=cds4355;Parent=gene4461;Dbxref=Genbank:WP_000362374.1;Name=WP_000362374.1;Note=Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA%3B cleaves DNA containing urea residues%2C AP sites%2C base mismatches%2C insertion/deletion mismatches%2C flaps%2C and pseudo-Y structures;gbkey=CDS;product=endonuclease V;protein_id=WP_000362374.1;transl_table=11 NC_008258.1 RefSeq gene 4189669 4190259 . + . ID=gene4462;Name=SFV_RS22410;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22410;old_locus_tag=SFV_4071 NC_008258.1 Protein Homology CDS 4189669 4190259 . + 0 ID=cds4356;Parent=gene4462;Dbxref=Genbank:WP_000941112.1;Name=WP_000941112.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000941112.1;transl_table=11 NC_008258.1 RefSeq gene 4190446 4190718 . + . ID=gene4463;Name=SFV_RS22415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22415;old_locus_tag=SFV_4072 NC_008258.1 Protein Homology CDS 4190446 4190718 . + 0 ID=cds4357;Parent=gene4463;Dbxref=Genbank:WP_001044513.1;Name=WP_001044513.1;gbkey=CDS;product=DNA-binding protein HU-alpha;protein_id=WP_001044513.1;transl_table=11 NC_008258.1 RefSeq gene 4190731 4191426 . + . ID=gene4464;Name=SFV_RS22420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22420;old_locus_tag=SFV_4073 NC_008258.1 Protein Homology CDS 4190731 4191426 . + 0 ID=cds4358;Parent=gene4464;Dbxref=Genbank:WP_001300651.1;Name=WP_001300651.1;gbkey=CDS;product=membrane protein;protein_id=WP_001300651.1;transl_table=11 NC_008258.1 RefSeq gene 4191428 4191853 . - . ID=gene4465;Name=zraP;gbkey=Gene;gene=zraP;gene_biotype=protein_coding;locus_tag=SFV_RS22425 NC_008258.1 Protein Homology CDS 4191428 4191853 . - 0 ID=cds4359;Parent=gene4465;Dbxref=Genbank:WP_000828222.1;Name=WP_000828222.1;gbkey=CDS;gene=zraP;product=zinc resistance-associated protein;protein_id=WP_000828222.1;transl_table=11 NC_008258.1 RefSeq gene 4192091 4193467 . + . ID=gene4466;Name=SFV_RS22430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22430;old_locus_tag=SFV_4075 NC_008258.1 Protein Homology CDS 4192091 4193467 . + 0 ID=cds4360;Parent=gene4466;Dbxref=Genbank:WP_001211915.1;Name=WP_001211915.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001211915.1;transl_table=11 NC_008258.1 RefSeq gene 4193464 4194789 . + . ID=gene4467;Name=SFV_RS22435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22435;old_locus_tag=SFV_4076 NC_008258.1 Protein Homology CDS 4193464 4194789 . + 0 ID=cds4361;Parent=gene4467;Dbxref=Genbank:WP_000148513.1;Name=WP_000148513.1;Note=DNA-binding response regulator in two-component regulatory system with ZraS%3B response regulator/sigma54 interaction protein;gbkey=CDS;product=acetoacetate metabolism regulatory protein AtoC;protein_id=WP_000148513.1;transl_table=11 NC_008258.1 RefSeq gene 4194786 4196075 . - . ID=gene4468;Name=SFV_RS22440;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22440;old_locus_tag=SFV_4077 NC_008258.1 Protein Homology CDS 4194786 4196075 . - 0 ID=cds4362;Parent=gene4468;Dbxref=Genbank:WP_000866820.1;Name=WP_000866820.1;Note=catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis;gbkey=CDS;product=phosphoribosylamine--glycine ligase;protein_id=WP_000866820.1;transl_table=11 NC_008258.1 RefSeq gene 4196087 4197676 . - . ID=gene4469;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=SFV_RS22445;old_locus_tag=SFV_4078 NC_008258.1 Protein Homology CDS 4196087 4197676 . - 0 ID=cds4363;Parent=gene4469;Dbxref=Genbank:WP_001187566.1;Name=WP_001187566.1;Note=involved in de novo purine biosynthesis;gbkey=CDS;gene=purH;product=bifunctional purine biosynthesis protein PurH;protein_id=WP_001187566.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4197986 4203380 . + . ID=id661;gbkey=repeat_region NC_008258.1 RefSeq gene 4198288 4199847 . + . ID=gene4470;Name=SFV_RS22450;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS22450;old_locus_tag=SFV_4079 NC_008258.1 RefSeq rRNA 4198288 4199847 . + . ID=rna106;Parent=gene4470;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq exon 4198288 4199847 . + . ID=id662;Parent=rna106;gbkey=rRNA;product=16S ribosomal RNA NC_008258.1 RefSeq gene 4199921 4199996 . + . ID=gene4471;Name=SFV_RS22455;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS22455;old_locus_tag=SFV_4080 NC_008258.1 tRNAscan-SE tRNA 4199921 4199996 . + . ID=rna107;Parent=gene4471;anticodon=(pos:4199955..4199957);gbkey=tRNA;product=tRNA-Glu NC_008258.1 tRNAscan-SE exon 4199921 4199996 . + . ID=id663;Parent=rna107;anticodon=(pos:4199955..4199957);gbkey=tRNA;product=tRNA-Glu NC_008258.1 RefSeq gene 4200181 4203105 . + . ID=gene4472;Name=SFV_RS22460;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS22460;old_locus_tag=SFV_4081 NC_008258.1 RefSeq rRNA 4200181 4203105 . + . ID=rna108;Parent=gene4472;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq exon 4200181 4203105 . + . ID=id664;Parent=rna108;gbkey=rRNA;product=23S ribosomal RNA NC_008258.1 RefSeq gene 4203189 4203304 . + . ID=gene4473;Name=SFV_RS22465;gbkey=Gene;gene_biotype=rRNA;locus_tag=SFV_RS22465;old_locus_tag=SFV_4082 NC_008258.1 cmsearch rRNA 4203189 4203304 . + . ID=rna109;Parent=gene4473;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 cmsearch exon 4203189 4203304 . + . ID=id665;Parent=rna109;gbkey=rRNA;product=5S ribosomal RNA NC_008258.1 RefSeq gene 4203419 4203862 . - . ID=gene4474;Name=SFV_RS22470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22470;old_locus_tag=SFV_4083 NC_008258.1 Protein Homology CDS 4203419 4203862 . - 0 ID=cds4364;Parent=gene4474;Dbxref=Genbank:WP_000236995.1;Name=WP_000236995.1;gbkey=CDS;product=acetyltransferase;protein_id=WP_000236995.1;transl_table=11 NC_008258.1 RefSeq gene 4204019 4204948 . + . ID=gene4475;Name=SFV_RS22475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22475;old_locus_tag=SFV_4084 NC_008258.1 Protein Homology CDS 4204019 4204948 . + 0 ID=cds4365;Parent=gene4475;Dbxref=Genbank:WP_001122794.1;Name=WP_001122794.1;Note=catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis;gbkey=CDS;product=homoserine O-succinyltransferase;protein_id=WP_001122794.1;transl_table=11 NC_008258.1 RefSeq gene 4205217 4206815 . + . ID=gene4476;Name=SFV_RS22480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22480;pseudo=true NC_008258.1 Protein Homology CDS 4205217 4206815 . + 0 ID=cds4366;Parent=gene4476;Note=Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle;exception=annotated by transcript or proteomic data;gbkey=CDS;product=malate synthase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4206845 4208149 . + . ID=gene4477;Name=SFV_RS22485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22485;old_locus_tag=SFV_4086 NC_008258.1 Protein Homology CDS 4206845 4208149 . + 0 ID=cds4367;Parent=gene4477;Dbxref=Genbank:WP_000857866.1;Name=WP_000857866.1;gbkey=CDS;product=isocitrate lyase;protein_id=WP_000857866.1;transl_table=11 NC_008258.1 RefSeq gene 4208333 4210070 . + . ID=gene4478;Name=aceK;gbkey=Gene;gene=aceK;gene_biotype=pseudogene;locus_tag=SFV_RS22490;pseudo=true NC_008258.1 Protein Homology CDS 4208333 4210070 . + 0 ID=cds4368;Parent=gene4478;Note=catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity%3B unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=aceK;product=isocitrate dehydrogenase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4210039 4212223 . - . ID=gene4479;Name=SFV_RS22495;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22495;pseudo=true NC_008258.1 Protein Homology CDS 4210039 4212223 . - 0 ID=cds4369;Parent=gene4479;exception=annotated by transcript or proteomic data;gbkey=CDS;product=ankyrin;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4212540 4213364 . - . ID=gene4480;Name=SFV_RS22500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22500;old_locus_tag=SFV_4089 NC_008258.1 Protein Homology CDS 4212540 4213364 . - 0 ID=cds4370;Parent=gene4480;Dbxref=Genbank:WP_000226394.1;Name=WP_000226394.1;Note=regulates the glyoxylate bypass operon (aceBAK)%2C which encodes isocitrate lyase%2C malate synthase and isocitrate dehydrogenase kinase/phosphorylase;gbkey=CDS;product=IclR family transcriptional regulator;protein_id=WP_000226394.1;transl_table=11 NC_008258.1 RefSeq gene 4213564 4217247 . + . ID=gene4481;Name=metH;gbkey=Gene;gene=metH;gene_biotype=protein_coding;locus_tag=SFV_RS22505;old_locus_tag=SFV_4090 NC_008258.1 Protein Homology CDS 4213564 4217247 . + 0 ID=cds4371;Parent=gene4481;Dbxref=Genbank:WP_000096020.1;Name=WP_000096020.1;Note=one of two methionine synthases in Escherichia coli%3B MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine%3B requires zinc for activity;gbkey=CDS;gene=metH;product=B12-dependent methionine synthase;protein_id=WP_000096020.1;transl_table=11 NC_008258.1 RefSeq gene 4217467 4219098 . + . ID=gene4482;Name=SFV_RS22510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22510;old_locus_tag=SFV_4091 NC_008258.1 Protein Homology CDS 4217467 4219098 . + 0 ID=cds4372;Parent=gene4482;Dbxref=Genbank:WP_000956830.1;Name=WP_000956830.1;gbkey=CDS;product=transporter;protein_id=WP_000956830.1;transl_table=11 NC_008258.1 RefSeq gene 4219189 4219878 . - . ID=gene4483;Name=SFV_RS22515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22515;old_locus_tag=SFV_4092 NC_008258.1 Protein Homology CDS 4219189 4219878 . - 0 ID=cds4373;Parent=gene4483;Dbxref=Genbank:WP_000421772.1;Name=WP_000421772.1;Note=peptidase E%3B catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue%3B belongs to peptidase S51 family;gbkey=CDS;product=peptidase E;protein_id=WP_000421772.1;transl_table=11 NC_008258.1 RefSeq gene 4219986 4220141 . + . ID=gene4484;Name=SFV_RS22520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22520 NC_008258.1 Protein Homology CDS 4219986 4220141 . + 0 ID=cds4374;Parent=gene4484;Dbxref=Genbank:WP_023517643.1;Name=WP_023517643.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_023517643.1;transl_table=11 NC_008258.1 RefSeq gene 4220260 4221489 . - . ID=gene4485;Name=SFV_RS22525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22525;old_locus_tag=SFV_4093 NC_008258.1 Protein Homology CDS 4220260 4221489 . - 0 ID=cds4375;Parent=gene4485;Dbxref=Genbank:WP_000858580.1;Name=WP_000858580.1;gbkey=CDS;product=L-sorbose 1-phosphate reductase;protein_id=WP_000858580.1;transl_table=11 NC_008258.1 RefSeq gene 4221541 4222329 . - . ID=gene4486;Name=SFV_RS22530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22530;old_locus_tag=SFV_4094 NC_008258.1 Protein Homology CDS 4221541 4222329 . - 0 ID=cds4376;Parent=gene4486;Dbxref=Genbank:WP_000437890.1;Name=WP_000437890.1;gbkey=CDS;product=PTS mannose transporter subunit IID;protein_id=WP_000437890.1;transl_table=11 NC_008258.1 RefSeq gene 4222340 4223137 . - . ID=gene4487;Name=SFV_RS22535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22535;old_locus_tag=SFV_4095 NC_008258.1 Protein Homology CDS 4222340 4223137 . - 0 ID=cds4377;Parent=gene4487;Dbxref=Genbank:WP_000406325.1;Name=WP_000406325.1;Note=catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B the IIC domain forms the PTS system translocation channel and contains the specific substrate-binding site;gbkey=CDS;product=PTS mannose transporter subunit IIC;protein_id=WP_000406325.1;transl_table=11 NC_008258.1 RefSeq gene 4223203 4223697 . - . ID=gene4488;Name=SFV_RS22540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22540;old_locus_tag=SFV_4096 NC_008258.1 Protein Homology CDS 4223203 4223697 . - 0 ID=cds4378;Parent=gene4488;Dbxref=Genbank:WP_001027853.1;Name=WP_001027853.1;gbkey=CDS;product=PTS fructose transporter subunit IIB;protein_id=WP_001027853.1;transl_table=11 NC_008258.1 RefSeq gene 4223697 4224104 . - . ID=gene4489;Name=SFV_RS22545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22545;old_locus_tag=SFV_4097 NC_008258.1 Protein Homology CDS 4223697 4224104 . - 0 ID=cds4379;Parent=gene4489;Dbxref=Genbank:WP_000245638.1;Name=WP_000245638.1;gbkey=CDS;product=PTS sorbose transporter subunit IIA;protein_id=WP_000245638.1;transl_table=11 NC_008258.1 RefSeq gene 4224114 4224920 . - . ID=gene4490;Name=SFV_RS22550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22550;old_locus_tag=SFV_4098 NC_008258.1 Protein Homology CDS 4224114 4224920 . - 0 ID=cds4380;Parent=gene4490;Dbxref=Genbank:WP_001195431.1;Name=WP_001195431.1;Note=Converts D-sorbitol-dphosphate to D-fructose-6-phosphate;gbkey=CDS;product=sorbitol-6-phosphate 2-dehydrogenase;protein_id=WP_001195431.1;transl_table=11 NC_008258.1 RefSeq gene 4224990 4225937 . - . ID=gene4491;Name=SFV_RS22555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22555;old_locus_tag=SFV_4099 NC_008258.1 Protein Homology CDS 4224990 4225937 . - 0 ID=cds4381;Parent=gene4491;Dbxref=Genbank:WP_011587285.1;Name=WP_011587285.1;gbkey=CDS;product=Cro/Cl family transcriptional regulator;protein_id=WP_011587285.1;transl_table=11 NC_008258.1 RefSeq gene 4226285 4227157 . + . ID=gene4492;Name=SFV_RS22560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22560;old_locus_tag=SFV_4100 NC_008258.1 Protein Homology CDS 4226285 4227157 . + 0 ID=cds4382;Parent=gene4492;Dbxref=Genbank:WP_000936346.1;Name=WP_000936346.1;Note=catalyzes the synthesis of pseudouridine from U-2604 in the 23S ribosomal RNA;gbkey=CDS;product=ribosomal large subunit pseudouridine synthase F;protein_id=WP_000936346.1;transl_table=11 NC_008258.1 RefSeq gene 4227290 4227508 . - . ID=gene4493;Name=SFV_RS22565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22565;old_locus_tag=SFV_4101 NC_008258.1 Protein Homology CDS 4227290 4227508 . - 0 ID=cds4383;Parent=gene4493;Dbxref=Genbank:WP_000627171.1;Name=WP_000627171.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000627171.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4227469 4228804 . + . ID=id666;gbkey=repeat_region NC_008258.1 RefSeq region 4227472 4228802 . - . ID=id667;gbkey=mobile_element NC_008258.1 RefSeq gene 4227804 4228388 . - . ID=gene4494;Name=SFV_RS22570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22570;old_locus_tag=SFV_4103 NC_008258.1 Protein Homology CDS 4227804 4228388 . - 0 ID=cds4384;Parent=gene4494;Dbxref=Genbank:WP_044024190.1;Name=WP_044024190.1;gbkey=CDS;product=transposase;protein_id=WP_044024190.1;transl_table=11 NC_008258.1 RefSeq gene 4228346 4228711 . - . ID=gene4495;Name=SFV_RS22575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22575;old_locus_tag=SFV_4104 NC_008258.1 Protein Homology CDS 4228346 4228711 . - 0 ID=cds4385;Parent=gene4495;Dbxref=Genbank:WP_000567796.1;Name=WP_000567796.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567796.1;transl_table=11 NC_008258.1 RefSeq gene 4229126 4230757 . + . ID=gene4496;Name=SFV_RS22585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22585;old_locus_tag=SFV_4105 NC_008258.1 Protein Homology CDS 4229126 4230757 . + 0 ID=cds4386;Parent=gene4496;Dbxref=Genbank:WP_001216446.1;Name=WP_001216446.1;Note=C4-dicarboxylate-sensing histidine kinase%3B part of two-component regulatory system with DcuR%3B regulates anaerobic fumarate respiration;gbkey=CDS;product=sensor histidine kinase;protein_id=WP_001216446.1;transl_table=11 NC_008258.1 RefSeq gene 4230754 4231473 . + . ID=gene4497;Name=SFV_RS22590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22590;old_locus_tag=SFV_4106 NC_008258.1 Protein Homology CDS 4230754 4231473 . + 0 ID=cds4387;Parent=gene4497;Dbxref=Genbank:WP_000611281.1;Name=WP_000611281.1;Note=response regulator in two-component regulatory system with DcuS%3B phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000611281.1;transl_table=11 NC_008258.1 RefSeq gene 4232045 4233385 . + . ID=gene4498;Name=SFV_RS22595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22595;old_locus_tag=SFV_4107 NC_008258.1 Protein Homology CDS 4232045 4233385 . + 0 ID=cds4388;Parent=gene4498;Dbxref=Genbank:WP_000899522.1;Name=WP_000899522.1;Note=functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to DcuA%3B DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate%2C malate%2C fumarate and succinate) transporters;gbkey=CDS;product=anaerobic C4-dicarboxylate transporter DcuB;protein_id=WP_000899522.1;transl_table=11 NC_008258.1 RefSeq gene 4233463 4235109 . + . ID=gene4499;Name=SFV_RS22600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22600;old_locus_tag=SFV_4108 NC_008258.1 Protein Homology CDS 4233463 4235109 . + 0 ID=cds4389;Parent=gene4499;Dbxref=Genbank:WP_000066675.1;Name=WP_000066675.1;Note=catalyzes the formation of malate from fumerate;gbkey=CDS;product=fumarate hydratase;protein_id=WP_000066675.1;transl_table=11 NC_008258.1 RefSeq gene 4235232 4235861 . + . ID=gene4500;Name=SFV_RS22605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22605;old_locus_tag=SFV_4109 NC_008258.1 Protein Homology CDS 4235232 4235861 . + 0 ID=cds4390;Parent=gene4500;Dbxref=Genbank:WP_000198728.1;Name=WP_000198728.1;gbkey=CDS;product=membrane protein;protein_id=WP_000198728.1;transl_table=11 NC_008258.1 RefSeq gene 4236000 4237421 . - . ID=gene4501;Name=SFV_RS22610;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22610;old_locus_tag=SFV_4110 NC_008258.1 Protein Homology CDS 4236000 4237421 . - 0 ID=cds4391;Parent=gene4501;Dbxref=Genbank:WP_000028118.1;Name=WP_000028118.1;gbkey=CDS;product=melibiose:sodium symporter;protein_id=WP_000028118.1;transl_table=11 NC_008258.1 RefSeq gene 4237524 4238879 . - . ID=gene4502;Name=SFV_RS22615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22615;old_locus_tag=SFV_4111 NC_008258.1 Protein Homology CDS 4237524 4238879 . - 0 ID=cds4392;Parent=gene4502;Dbxref=Genbank:WP_000986606.1;Name=WP_000986606.1;Note=catalyses the hydrolysis of terminal non-reducing alpha-D-galactose residues in alpha-D-galactosides;gbkey=CDS;product=alpha-galactosidase;protein_id=WP_000986606.1;transl_table=11 NC_008258.1 RefSeq gene 4238969 4239130 . - . ID=gene4503;Name=SFV_RS22620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22620 NC_008258.1 Protein Homology CDS 4238969 4239130 . - 0 ID=cds4393;Parent=gene4503;Dbxref=Genbank:WP_044024193.1;Name=WP_044024193.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_044024193.1;transl_table=11 NC_008258.1 RefSeq gene 4239162 4240070 . + . ID=gene4504;Name=SFV_RS22625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22625;old_locus_tag=SFV_4112 NC_008258.1 Protein Homology CDS 4239162 4240070 . + 0 ID=cds4394;Parent=gene4504;Dbxref=Genbank:WP_001090765.1;Name=WP_001090765.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001090765.1;transl_table=11 NC_008258.1 RefSeq gene 4240266 4242536 . + . ID=gene4505;Name=SFV_RS22630;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22630;old_locus_tag=SFV_4113 NC_008258.1 Protein Homology CDS 4240266 4242536 . + 0 ID=cds4395;Parent=gene4505;Dbxref=Genbank:WP_000978634.1;Name=WP_000978634.1;Note=biodegradative%3B catalyzes the formation of agmatine from arginine;gbkey=CDS;product=arginine decarboxylase;protein_id=WP_000978634.1;transl_table=11 NC_008258.1 RefSeq gene 4242861 4243622 . + . ID=gene4506;Name=SFV_RS22635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22635;old_locus_tag=SFV_4114 NC_008258.1 Protein Homology CDS 4242861 4243622 . + 0 ID=cds4396;Parent=gene4506;Dbxref=Genbank:WP_001217059.1;Name=WP_001217059.1;Note=regulates genes involved in arginine decarboxylase;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001217059.1;transl_table=11 NC_008258.1 RefSeq gene 4243759 4245096 . + . ID=gene4507;Name=SFV_RS22640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22640;old_locus_tag=SFV_4115 NC_008258.1 Protein Homology CDS 4243759 4245096 . + 0 ID=cds4397;Parent=gene4507;Dbxref=Genbank:WP_000093154.1;Name=WP_000093154.1;gbkey=CDS;product=arginine/agmatine antiporter;protein_id=WP_000093154.1;transl_table=11 NC_008258.1 RefSeq gene 4245254 4246843 . + . ID=gene4508;Name=SFV_RS22645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22645;old_locus_tag=SFV_4116 NC_008258.1 Protein Homology CDS 4245254 4246843 . + 0 ID=cds4398;Parent=gene4508;Dbxref=Genbank:WP_005108689.1;Name=WP_005108689.1;gbkey=CDS;product=metal dependent hydrolase;protein_id=WP_005108689.1;transl_table=11 NC_008258.1 RefSeq gene 4246840 4247508 . + . ID=gene4509;Name=SFV_RS22650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22650;old_locus_tag=SFV_4117 NC_008258.1 Protein Homology CDS 4246840 4247508 . + 0 ID=cds4399;Parent=gene4509;Dbxref=Genbank:WP_000697923.1;Name=WP_000697923.1;Note=response regulator in two-component regulatory system with BasS;gbkey=CDS;product=two-component system response regulator;protein_id=WP_000697923.1;transl_table=11 NC_008258.1 RefSeq gene 4247518 4248609 . + . ID=gene4510;Name=SFV_RS22655;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22655;old_locus_tag=SFV_4118 NC_008258.1 Protein Homology CDS 4247518 4248609 . + 0 ID=cds4400;Parent=gene4510;Dbxref=Genbank:WP_001344046.1;Name=WP_001344046.1;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001344046.1;transl_table=11 NC_008258.1 RefSeq gene 4248585 4248674 . - . ID=gene4511;Name=SFV_RS22660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22660 NC_008258.1 Protein Homology CDS 4248585 4248674 . - 0 ID=cds4401;Parent=gene4511;Dbxref=Genbank:WP_000797656.1;Name=WP_000797656.1;gbkey=CDS;product=membrane protein;protein_id=WP_000797656.1;transl_table=11 NC_008258.1 RefSeq gene 4248786 4250288 . - . ID=gene4512;Name=SFV_RS22665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22665;old_locus_tag=SFV_4119 NC_008258.1 Protein Homology CDS 4248786 4250288 . - 0 ID=cds4402;Parent=gene4512;Dbxref=Genbank:WP_000919720.1;Name=WP_000919720.1;gbkey=CDS;product=glycine/betaine ABC transporter;protein_id=WP_000919720.1;transl_table=11 NC_008258.1 RefSeq gene 4250552 4251430 . - . ID=gene4513;Name=SFV_RS22670;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22670;old_locus_tag=SFV_4120 NC_008258.1 Protein Homology CDS 4250552 4251430 . - 0 ID=cds4403;Parent=gene4513;Dbxref=Genbank:WP_000169147.1;Name=WP_000169147.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000169147.1;transl_table=11 NC_008258.1 RefSeq gene 4251427 4253655 . - . ID=gene4514;Name=SFV_RS22675;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22675;old_locus_tag=SFV_4121 NC_008258.1 Protein Homology CDS 4251427 4253655 . - 0 ID=cds4404;Parent=gene4514;Dbxref=Genbank:WP_000288548.1;Name=WP_000288548.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000288548.1;transl_table=11 NC_008258.1 RefSeq gene 4254057 4254392 . + . ID=gene4515;Name=SFV_RS22680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22680 NC_008258.1 Protein Homology CDS 4254057 4254392 . + 0 ID=cds4405;Parent=gene4515;Dbxref=Genbank:WP_001300891.1;Name=WP_001300891.1;gbkey=CDS;product=protein PhnA;protein_id=WP_001300891.1;transl_table=11 NC_008258.1 RefSeq gene 4254550 4254993 . + . ID=gene4516;Name=SFV_RS22685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22685;old_locus_tag=SFV_4123 NC_008258.1 Protein Homology CDS 4254550 4254993 . + 0 ID=cds4406;Parent=gene4516;Dbxref=Genbank:WP_001131335.1;Name=WP_001131335.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001131335.1;transl_table=11 NC_008258.1 RefSeq gene 4255126 4255914 . + . ID=gene4517;Name=SFV_RS22690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22690;old_locus_tag=SFV_4124 NC_008258.1 Protein Homology CDS 4255126 4255914 . + 0 ID=cds4407;Parent=gene4517;Dbxref=Genbank:WP_001193423.1;Name=WP_001193423.1;gbkey=CDS;product=phosphonates import ATP-binding protein PhnC;protein_id=WP_001193423.1;transl_table=11 NC_008258.1 RefSeq gene 4255939 4256955 . + . ID=gene4518;Name=SFV_RS22695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22695;old_locus_tag=SFV_4125 NC_008258.1 Protein Homology CDS 4255939 4256955 . + 0 ID=cds4408;Parent=gene4518;Dbxref=Genbank:WP_000991992.1;Name=WP_000991992.1;Note=with PhnCE is involved in the transport of phosphonates;gbkey=CDS;product=phosphonate ABC transporter substrate-binding protein;protein_id=WP_000991992.1;transl_table=11 NC_008258.1 RefSeq gene 4257010 4257234 . + . ID=gene4519;Name=SFV_RS22700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22700;old_locus_tag=SFV_4126 NC_008258.1 Protein Homology CDS 4257010 4257234 . + 0 ID=cds4409;Parent=gene4519;Dbxref=Genbank:WP_001112357.1;Name=WP_001112357.1;gbkey=CDS;product=membrane channel protein of phosphonate transporter;protein_id=WP_001112357.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4257211 4257984 . + . ID=id668;gbkey=repeat_region NC_008258.1 RefSeq region 4257213 4257980 . - . ID=id669;gbkey=mobile_element NC_008258.1 RefSeq gene 4257231 4257731 . - . ID=gene4520;Name=SFV_RS22705;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22705;old_locus_tag=SFV_4127;partial=true;pseudo=true;start_range=.,4257231 NC_008258.1 Protein Homology CDS 4257231 4257731 . - 0 ID=cds4410;Parent=gene4520;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;start_range=.,4257231;transl_table=11 NC_008258.1 RefSeq gene 4257975 4258073 . + . ID=gene4521;Name=SFV_RS22710;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22710;partial=true;pseudo=true;start_range=.,4257975 NC_008258.1 Protein Homology CDS 4257975 4258073 . + 0 ID=cds4411;Parent=gene4521;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4257975;transl_table=11 NC_008258.1 RefSeq gene 4258092 4259123 . + . ID=gene4522;Name=SFV_RS22715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22715;old_locus_tag=SFV_4129 NC_008258.1 Protein Homology CDS 4258092 4259123 . + 0 ID=cds4412;Parent=gene4522;Dbxref=Genbank:WP_000446384.1;Name=WP_000446384.1;Note=with MdtO and MdtP is involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride;gbkey=CDS;product=multidrug resistance protein MdtN;protein_id=WP_000446384.1;transl_table=11 NC_008258.1 RefSeq gene 4259123 4261165 . + . ID=gene4523;Name=SFV_RS22720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22720;old_locus_tag=SFV_4130 NC_008258.1 Protein Homology CDS 4259123 4261165 . + 0 ID=cds4413;Parent=gene4523;Dbxref=Genbank:WP_001275150.1;Name=WP_001275150.1;Note=possibly part of a tripartite efflux system composed of MdtN%2C MdtO and MdtP which could be involved in resistance to puromycin%2C acriflavine and tetraphenylarsonium chloride;gbkey=CDS;product=multidrug transporter;protein_id=WP_001275150.1;transl_table=11 NC_008258.1 RefSeq gene 4261162 4262628 . + . ID=gene4524;Name=SFV_RS22725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22725;old_locus_tag=SFV_4131 NC_008258.1 Protein Homology CDS 4261162 4262628 . + 0 ID=cds4414;Parent=gene4524;Dbxref=Genbank:WP_000610572.1;Name=WP_000610572.1;Note=part of a multidrug efflux system involved in resistance to acriflavin%2C puromycin%2C erytjhromycin and tetraphenylarsonium chloride%3B member of the outer membrane factor (OMF) family;gbkey=CDS;product=multidrug resistance outer membrane protein MdtP;protein_id=WP_000610572.1;transl_table=11 NC_008258.1 RefSeq gene 4262826 4263245 . + . ID=gene4525;Name=SFV_RS22730;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22730;pseudo=true NC_008258.1 Protein Homology CDS 4262826 4263245 . + 0 ID=cds4415;Parent=gene4525;gbkey=CDS;product=spermidine/putrescine ABC transporter substrate-binding protein;pseudo=true;transl_except=(pos:4263063..4263065%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4263294 4264706 . + . ID=gene4526;Name=SFV_RS22735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22735 NC_008258.1 Protein Homology CDS 4263294 4264706 . + 0 ID=cds4416;Parent=gene4526;Dbxref=Genbank:WP_000063432.1;Name=WP_000063432.1;gbkey=CDS;product=formate dehydrogenase subunit alpha;protein_id=WP_000063432.1;transl_table=11 NC_008258.1 RefSeq gene 4264707 4264973 . + . ID=gene4527;Name=SFV_RS22740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22740 NC_008258.1 GeneMarkS+ CDS 4264707 4264973 . + 0 ID=cds4417;Parent=gene4527;Dbxref=Genbank:WP_000556185.1;Name=WP_000556185.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000556185.1;transl_table=11 NC_008258.1 RefSeq gene 4265067 4265756 . + . ID=gene4528;Name=SFV_RS22745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22745;old_locus_tag=SFV_4133 NC_008258.1 Protein Homology CDS 4265067 4265756 . + 0 ID=cds4418;Parent=gene4528;Dbxref=Genbank:WP_000719886.1;Name=WP_000719886.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000719886.1;transl_table=11 NC_008258.1 RefSeq gene 4265834 4267147 . - . ID=gene4529;Name=SFV_RS22750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22750;old_locus_tag=SFV_4134 NC_008258.1 Protein Homology CDS 4265834 4267147 . - 0 ID=cds4419;Parent=gene4529;Dbxref=Genbank:WP_000789594.1;Name=WP_000789594.1;gbkey=CDS;product=proton glutamate symport protein;protein_id=WP_000789594.1;transl_table=11 NC_008258.1 RefSeq gene 4267489 4268085 . - . ID=gene4530;Name=SFV_RS22755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22755;old_locus_tag=SFV_4135 NC_008258.1 Protein Homology CDS 4267489 4268085 . - 0 ID=cds4420;Parent=gene4530;Dbxref=Genbank:WP_000812982.1;Name=WP_000812982.1;gbkey=CDS;product=formate-dependent nitrite reductase complex subunit NrfG;protein_id=WP_000812982.1;transl_table=11 NC_008258.1 RefSeq gene 4268082 4268465 . - . ID=gene4531;Name=SFV_RS22760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22760;old_locus_tag=SFV_4136 NC_008258.1 Protein Homology CDS 4268082 4268465 . - 0 ID=cds4421;Parent=gene4531;Dbxref=Genbank:WP_001032549.1;Name=WP_001032549.1;gbkey=CDS;product=formate-dependent nitrite reductase complex subunit NrfF;protein_id=WP_001032549.1;transl_table=11 NC_008258.1 RefSeq gene 4268458 4270065 . - . ID=gene4532;Name=SFV_RS22765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22765;old_locus_tag=SFV_4137 NC_008258.1 Protein Homology CDS 4268458 4270065 . - 0 ID=cds4422;Parent=gene4532;Dbxref=Genbank:WP_005050577.1;Name=WP_005050577.1;Note=with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552;gbkey=CDS;product=heme lyase subunit NrfE;protein_id=WP_005050577.1;transl_table=11 NC_008258.1 RefSeq gene 4270196 4271152 . - . ID=gene4533;Name=SFV_RS22770;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22770;old_locus_tag=SFV_4138 NC_008258.1 Protein Homology CDS 4270196 4271152 . - 0 ID=cds4423;Parent=gene4533;Dbxref=Genbank:WP_000195182.1;Name=WP_000195182.1;Note=membrane protein%2C may be involved in the transfer of electrons from quinones to c-type cytochromes;gbkey=CDS;product=formate-dependent nitrite reductase subunit NrfD;protein_id=WP_000195182.1;transl_table=11 NC_008258.1 RefSeq gene 4271149 4271820 . - . ID=gene4534;Name=SFV_RS22775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22775;old_locus_tag=SFV_4139 NC_008258.1 Protein Homology CDS 4271149 4271820 . - 0 ID=cds4424;Parent=gene4534;Dbxref=Genbank:WP_000220281.1;Name=WP_000220281.1;Note=4Fe4S subunit%3B may be involved in the transfer of electrons from quinones to the c-type cytochromes;gbkey=CDS;product=protein NrfC;protein_id=WP_000220281.1;transl_table=11 NC_008258.1 RefSeq gene 4271817 4272383 . - . ID=gene4535;Name=SFV_RS22780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22780;old_locus_tag=SFV_4140 NC_008258.1 Protein Homology CDS 4271817 4272383 . - 0 ID=cds4425;Parent=gene4535;Dbxref=Genbank:WP_005050574.1;Name=WP_005050574.1;Note=part of nitrite reductase complex%3B NrfB is active at high nitrate conditions%3B NrfA%2C B%2C C%2C and D are essential for the formate-dependent nitrite reduction to ammonia;gbkey=CDS;product=cytochrome C nitrite reductase pentaheme subunit;protein_id=WP_005050574.1;transl_table=11 NC_008258.1 RefSeq gene 4272428 4273864 . - . ID=gene4536;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=SFV_RS22785;old_locus_tag=SFV_4141 NC_008258.1 Protein Homology CDS 4272428 4273864 . - 0 ID=cds4426;Parent=gene4536;Dbxref=Genbank:WP_011069594.1;Name=WP_011069594.1;Note=catalyzes the formate-dependent reduction of nitrite to ammonia%3B cytochrome C552;gbkey=CDS;gene=nrfA;product=cytochrome c-552;protein_id=WP_011069594.1;transl_table=11 NC_008258.1 RefSeq gene 4273961 4274146 . - . ID=gene4537;Name=SFV_RS22790;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22790 NC_008258.1 Protein Homology CDS 4273961 4274146 . - 0 ID=cds4427;Parent=gene4537;Dbxref=Genbank:WP_001324833.1;Name=WP_001324833.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001324833.1;transl_table=11 NC_008258.1 RefSeq gene 4274257 4276215 . + . ID=gene4538;Name=SFV_RS22795;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22795;old_locus_tag=SFV_4142 NC_008258.1 Protein Homology CDS 4274257 4276215 . + 0 ID=cds4428;Parent=gene4538;Dbxref=Genbank:WP_000078234.1;Name=WP_000078234.1;Note=Acs%3B catalyzes the conversion of acetate and CoA to acetyl-CoA;gbkey=CDS;product=acetyl-CoA synthetase;protein_id=WP_000078234.1;transl_table=11 NC_008258.1 RefSeq gene 4276415 4276729 . + . ID=gene4539;Name=SFV_RS22800;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22800;old_locus_tag=SFV_4143 NC_008258.1 Protein Homology CDS 4276415 4276729 . + 0 ID=cds4429;Parent=gene4539;Dbxref=Genbank:WP_001014565.1;Name=WP_001014565.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001014565.1;transl_table=11 NC_008258.1 RefSeq gene 4276726 4278375 . + . ID=gene4540;Name=actP;gbkey=Gene;gene=actP;gene_biotype=protein_coding;locus_tag=SFV_RS22805;old_locus_tag=SFV_4144 NC_008258.1 Protein Homology CDS 4276726 4278375 . + 0 ID=cds4430;Parent=gene4540;Dbxref=Genbank:WP_000832580.1;Name=WP_000832580.1;Note=member of the sodium:solute symporter family%3B cotranscribed with the acs gene which encodes acetyl coenzyme A synthase%3B mutations affect acetate uptake;gbkey=CDS;gene=actP;product=cation/acetate symporter ActP;protein_id=WP_000832580.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4278623 4279403 . + . ID=id670;gbkey=repeat_region NC_008258.1 RefSeq region 4278627 4279394 . - . ID=id671;gbkey=mobile_element NC_008258.1 RefSeq gene 4278642 4278935 . - . ID=gene4541;Name=SFV_RS22810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22810 NC_008258.1 Protein Homology CDS 4278642 4278935 . - 0 ID=cds4431;Parent=gene4541;Dbxref=Genbank:WP_000951587.1;Name=WP_000951587.1;gbkey=CDS;product=transposase;protein_id=WP_000951587.1;transl_table=11 NC_008258.1 RefSeq gene 4279064 4279288 . - . ID=gene4542;Name=SFV_RS22815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22815 NC_008258.1 Protein Homology CDS 4279064 4279288 . - 0 ID=cds4432;Parent=gene4542;Dbxref=Genbank:WP_001243684.1;Name=WP_001243684.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001243684.1;transl_table=11 NC_008258.1 RefSeq gene 4279702 4281351 . - . ID=gene4543;Name=SFV_RS22820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22820;old_locus_tag=SFV_4147 NC_008258.1 Protein Homology CDS 4279702 4281351 . - 0 ID=cds4433;Parent=gene4543;Dbxref=Genbank:WP_000402207.1;Name=WP_000402207.1;gbkey=CDS;product=sodium:proton antiporter;protein_id=WP_000402207.1;transl_table=11 NC_008258.1 RefSeq gene 4281502 4282851 . - . ID=gene4544;Name=SFV_RS22825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22825;old_locus_tag=SFV_4148 NC_008258.1 Protein Homology CDS 4281502 4282851 . - 0 ID=cds4434;Parent=gene4544;Dbxref=Genbank:WP_000106882.1;Name=WP_000106882.1;gbkey=CDS;product=guanine/hypoxanthine permease GhxP;protein_id=WP_000106882.1;transl_table=11 NC_008258.1 RefSeq gene 4283557 4284021 . - . ID=gene4545;Name=SFV_RS22830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22830;old_locus_tag=SFV_4149 NC_008258.1 Protein Homology CDS 4283557 4284021 . - 0 ID=cds4435;Parent=gene4545;Dbxref=Genbank:WP_000412428.1;Name=WP_000412428.1;gbkey=CDS;product=redox-sensitive transcriptional activator SoxR;protein_id=WP_000412428.1;transl_table=11 NC_008258.1 RefSeq gene 4284107 4284430 . + . ID=gene4546;Name=SFV_RS22835;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22835;old_locus_tag=SFV_4150 NC_008258.1 Protein Homology CDS 4284107 4284430 . + 0 ID=cds4436;Parent=gene4546;Dbxref=Genbank:WP_000019363.1;Name=WP_000019363.1;Note=regulates genes involved in response to oxidative stress;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000019363.1;transl_table=11 NC_008258.1 RefSeq gene 4284433 4286019 . - . ID=gene4547;Name=SFV_RS22840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22840;old_locus_tag=SFV_4151 NC_008258.1 Protein Homology CDS 4284433 4286019 . - 0 ID=cds4437;Parent=gene4547;Dbxref=Genbank:WP_000019522.1;Name=WP_000019522.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000019522.1;transl_table=11 NC_008258.1 RefSeq gene 4286448 4286729 . + . ID=gene4548;Name=SFV_RS22845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22845 NC_008258.1 Protein Homology CDS 4286448 4286729 . + 0 ID=cds4438;Parent=gene4548;Dbxref=Genbank:WP_001295689.1;Name=WP_001295689.1;gbkey=CDS;product=membrane protein;protein_id=WP_001295689.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4286740 4287515 . + . ID=id672;gbkey=repeat_region NC_008258.1 RefSeq region 4286744 4287511 . + . ID=id673;gbkey=mobile_element NC_008258.1 RefSeq gene 4286850 4287074 . + . ID=gene4549;Name=SFV_RS22850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22850 NC_008258.1 Protein Homology CDS 4286850 4287074 . + 0 ID=cds4439;Parent=gene4549;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4287101 4287496 . + . ID=gene4550;Name=SFV_RS22855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22855 NC_008258.1 Protein Homology CDS 4287101 4287496 . + 0 ID=cds4440;Parent=gene4550;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 4287604 4288140 . - . ID=gene4551;Name=SFV_RS22860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22860;old_locus_tag=SFV_4154 NC_008258.1 Protein Homology CDS 4287604 4288140 . - 0 ID=cds4441;Parent=gene4551;Dbxref=Genbank:WP_000168305.1;Name=WP_000168305.1;Note=binds to single stranded DNA and PriA helcase facilitate replication restart;gbkey=CDS;product=single-stranded DNA-binding protein;protein_id=WP_000168305.1;transl_table=11 NC_008258.1 RefSeq gene 4288394 4291216 . + . ID=gene4552;Name=SFV_RS22865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22865;old_locus_tag=SFV_4155 NC_008258.1 Protein Homology CDS 4288394 4291216 . + 0 ID=cds4442;Parent=gene4552;Dbxref=Genbank:WP_000357740.1;Name=WP_000357740.1;gbkey=CDS;product=UvrABC system protein A;protein_id=WP_000357740.1;transl_table=11 NC_008258.1 RefSeq gene 4291251 4291607 . - . ID=gene4553;Name=SFV_RS22870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22870;old_locus_tag=SFV_4156 NC_008258.1 Protein Homology CDS 4291251 4291607 . - 0 ID=cds4443;Parent=gene4553;Dbxref=Genbank:WP_000155673.1;Name=WP_000155673.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000155673.1;transl_table=11 NC_008258.1 RefSeq gene 4291611 4292027 . - . ID=gene4554;Name=SFV_RS22875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22875;old_locus_tag=SFV_4157 NC_008258.1 Protein Homology CDS 4291611 4292027 . - 0 ID=cds4444;Parent=gene4554;Dbxref=Genbank:WP_000270367.1;Name=WP_000270367.1;gbkey=CDS;product=thiamin phosphate synthase;protein_id=WP_000270367.1;transl_table=11 NC_008258.1 RefSeq gene 4292138 4292851 . - . ID=gene4555;Name=aphA;gbkey=Gene;gene=aphA;gene_biotype=protein_coding;locus_tag=SFV_RS22880 NC_008258.1 Protein Homology CDS 4292138 4292851 . - 0 ID=cds4445;Parent=gene4555;Dbxref=Genbank:WP_001226928.1;Name=WP_001226928.1;Note=Class B%3B non-specific%3B catalyzes the dephosphorylation of organic phosphomonoesters%3B also has phosphotransferase activity;gbkey=CDS;gene=aphA;product=class B acid phosphatase;protein_id=WP_001226928.1;transl_table=11 NC_008258.1 RefSeq gene 4293253 4293737 . + . ID=gene4556;Name=SFV_RS22885;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS22885;pseudo=true NC_008258.1 Protein Homology CDS 4293253 4293737 . + 0 ID=cds4446;Parent=gene4556;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4293960 4295153 . - . ID=gene4557;Name=SFV_RS22890;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22890;old_locus_tag=SFV_4159 NC_008258.1 Protein Homology CDS 4293960 4295153 . - 0 ID=cds4447;Parent=gene4557;Dbxref=Genbank:WP_000486969.1;Name=WP_000486969.1;Note=catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate;gbkey=CDS;product=aromatic amino acid aminotransferase;protein_id=WP_000486969.1;transl_table=11 NC_008258.1 RefSeq gene 4295406 4296485 . - . ID=gene4558;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=SFV_RS22895;old_locus_tag=SFV_4160 NC_008258.1 Protein Homology CDS 4295406 4296485 . - 0 ID=cds4448;Parent=gene4558;Dbxref=Genbank:WP_001147328.1;Name=WP_001147328.1;Note=converts L-alanine to D-alanine which is used in cell wall biosynthesis%3B binds one pyridoxal phosphate per monomer%3B forms a homodimer;gbkey=CDS;gene=alr;product=alanine racemase biosynthetic;protein_id=WP_001147328.1;transl_table=11 NC_008258.1 RefSeq gene 4296538 4297953 . - . ID=gene4559;Name=SFV_RS22900;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22900;old_locus_tag=SFV_4161 NC_008258.1 Protein Homology CDS 4296538 4297953 . - 0 ID=cds4449;Parent=gene4559;Dbxref=Genbank:WP_000918363.1;Name=WP_000918363.1;Note=unwinds double stranded DNA;gbkey=CDS;product=replicative DNA helicase;protein_id=WP_000918363.1;transl_table=11 NC_008258.1 RefSeq gene 4298036 4299019 . + . ID=gene4560;Name=SFV_RS22905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22905;old_locus_tag=SFV_4162 NC_008258.1 Protein Homology CDS 4298036 4299019 . + 0 ID=cds4450;Parent=gene4560;Dbxref=Genbank:WP_000235501.1;Name=WP_000235501.1;gbkey=CDS;product=quinone oxidoreductase;protein_id=WP_000235501.1;transl_table=11 NC_008258.1 RefSeq gene 4299185 4299427 . - . ID=gene4561;Name=pspG;gbkey=Gene;gene=pspG;gene_biotype=protein_coding;locus_tag=SFV_RS22910 NC_008258.1 Protein Homology CDS 4299185 4299427 . - 0 ID=cds4451;Parent=gene4561;Dbxref=Genbank:WP_000891402.1;Name=WP_000891402.1;Note=coordinately regulated along with pspA%3B PspF-dependent induction in response to secretin overexpression in Yersinia;gbkey=CDS;gene=pspG;product=phage shock protein G;protein_id=WP_000891402.1;transl_table=11 NC_008258.1 RefSeq gene 4299561 4300553 . - . ID=gene4562;Name=SFV_RS22915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22915;old_locus_tag=SFV_4164 NC_008258.1 Protein Homology CDS 4299561 4300553 . - 0 ID=cds4452;Parent=gene4562;Dbxref=Genbank:WP_032155561.1;Name=WP_032155561.1;gbkey=CDS;product=tRNA-dihydrouridine synthase A;protein_id=WP_032155561.1;transl_table=11 NC_008258.1 RefSeq gene 4300961 4301668 . - . ID=gene4563;Name=SFV_RS22920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22920;old_locus_tag=SFV_4165 NC_008258.1 Protein Homology CDS 4300961 4301668 . - 0 ID=cds4453;Parent=gene4563;Dbxref=Genbank:WP_011069598.1;Name=WP_011069598.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069598.1;transl_table=11 NC_008258.1 RefSeq gene 4301692 4301946 . - . ID=gene4564;Name=SFV_RS22925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22925;old_locus_tag=SFV_4166 NC_008258.1 Protein Homology CDS 4301692 4301946 . - 0 ID=cds4454;Parent=gene4564;Dbxref=Genbank:WP_005106210.1;Name=WP_005106210.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106210.1;transl_table=11 NC_008258.1 RefSeq gene 4302264 4302779 . + . ID=gene4565;Name=SFV_RS22930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22930;old_locus_tag=SFV_4167 NC_008258.1 Protein Homology CDS 4302264 4302779 . + 0 ID=cds4455;Parent=gene4565;Dbxref=Genbank:WP_001295691.1;Name=WP_001295691.1;Note=Acts as a negative controlling element%2C employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB;gbkey=CDS;product=zinc uptake regulation protein;protein_id=WP_001295691.1;transl_table=11 NC_008258.1 RefSeq gene 4302821 4303030 . - . ID=gene4566;Name=SFV_RS22935;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22935;old_locus_tag=SFV_4168 NC_008258.1 Protein Homology CDS 4302821 4303030 . - 0 ID=cds4456;Parent=gene4566;Dbxref=Genbank:WP_001030593.1;Name=WP_001030593.1;gbkey=CDS;product=stress-induced protein%2C UPF0337 family;protein_id=WP_001030593.1;transl_table=11 NC_008258.1 RefSeq gene 4303146 4304471 . - . ID=gene4567;Name=SFV_RS22940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22940;old_locus_tag=SFV_4169 NC_008258.1 Protein Homology CDS 4303146 4304471 . - 0 ID=cds4457;Parent=gene4567;Dbxref=Genbank:WP_001301116.1;Name=WP_001301116.1;gbkey=CDS;product=MATE family efflux transporter;protein_id=WP_001301116.1;transl_table=11 NC_008258.1 RefSeq gene 4304544 4305152 . - . ID=gene4568;Name=SFV_RS22945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22945;old_locus_tag=SFV_4170 NC_008258.1 Protein Homology CDS 4304544 4305152 . - 0 ID=cds4458;Parent=gene4568;Dbxref=Genbank:WP_000646078.1;Name=WP_000646078.1;Note=Represses a number of genes involved in the response to DNA damage;gbkey=CDS;product=LexA repressor;protein_id=WP_000646078.1;transl_table=11 NC_008258.1 RefSeq gene 4305262 4305630 . - . ID=gene4569;Name=SFV_RS22950;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22950;old_locus_tag=SFV_4171 NC_008258.1 Protein Homology CDS 4305262 4305630 . - 0 ID=cds4459;Parent=gene4569;Dbxref=Genbank:WP_000002907.1;Name=WP_000002907.1;Note=catalyzes the phosphorylation of diacylglycerol to form diacylglycerol phosphate;gbkey=CDS;product=diacylglycerol kinase;protein_id=WP_000002907.1;transl_table=11 NC_008258.1 RefSeq gene 4305801 4308224 . + . ID=gene4570;Name=SFV_RS22955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22955;old_locus_tag=SFV_4172 NC_008258.1 Protein Homology CDS 4305801 4308224 . + 0 ID=cds4460;Parent=gene4570;Dbxref=Genbank:WP_005050606.1;Name=WP_005050606.1;Note=PlsB%3B catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA;gbkey=CDS;product=glycerol-3-phosphate acyltransferase;protein_id=WP_005050606.1;transl_table=11 NC_008258.1 RefSeq gene 4308379 4309251 . - . ID=gene4571;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=SFV_RS22960;old_locus_tag=SFV_4173 NC_008258.1 Protein Homology CDS 4308379 4309251 . - 0 ID=cds4461;Parent=gene4571;Dbxref=Genbank:WP_000455228.1;Name=WP_000455228.1;Note=catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate%2C as part of the ubiquinone biosynthesis pathway;gbkey=CDS;gene=ubiA;product=4-hydroxybenzoate octaprenyltransferase;protein_id=WP_000455228.1;transl_table=11 NC_008258.1 RefSeq gene 4309264 4309761 . - . ID=gene4572;Name=ubiC;gbkey=Gene;gene=ubiC;gene_biotype=protein_coding;locus_tag=SFV_RS22965;old_locus_tag=SFV_4174 NC_008258.1 Protein Homology CDS 4309264 4309761 . - 0 ID=cds4462;Parent=gene4572;Dbxref=Genbank:WP_001295693.1;Name=WP_001295693.1;Note=catalyzes the formation of 4-hydroxybenzoate from chorismate;gbkey=CDS;gene=ubiC;product=Chorismate pyruvate-lyase;protein_id=WP_001295693.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4309897 4310675 . + . ID=id674;gbkey=repeat_region NC_008258.1 RefSeq region 4309904 4310671 . - . ID=id675;gbkey=mobile_element NC_008258.1 RefSeq gene 4309919 4310422 . - . ID=gene4573;Name=SFV_RS22970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22970;old_locus_tag=SFV_4175 NC_008258.1 Protein Homology CDS 4309919 4310422 . - 0 ID=cds4463;Parent=gene4573;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 4310805 4311725 . - . ID=gene4574;Name=SFV_RS22975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22975;old_locus_tag=SFV_4177 NC_008258.1 Protein Homology CDS 4310805 4311725 . - 0 ID=cds4464;Parent=gene4574;Dbxref=Genbank:WP_000783439.1;Name=WP_000783439.1;gbkey=CDS;product=maltose operon protein;protein_id=WP_000783439.1;transl_table=11 NC_008258.1 RefSeq gene 4311877 4313217 . - . ID=gene4575;Name=lamB;gbkey=Gene;gene=lamB;gene_biotype=protein_coding;locus_tag=SFV_RS22980;old_locus_tag=SFV_4178 NC_008258.1 Protein Homology CDS 4311877 4313217 . - 0 ID=cds4465;Parent=gene4575;Dbxref=Genbank:WP_000973658.1;Name=WP_000973658.1;Note=porin involved in the transport of maltose and maltodextrins;gbkey=CDS;gene=lamB;product=maltoporin;protein_id=WP_000973658.1;transl_table=11 NC_008258.1 RefSeq gene 4313289 4314404 . - . ID=gene4576;Name=SFV_RS22985;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22985;old_locus_tag=SFV_4179 NC_008258.1 Protein Homology CDS 4313289 4314404 . - 0 ID=cds4466;Parent=gene4576;Dbxref=Genbank:WP_005106218.1;Name=WP_005106218.1;Note=with malEFG is involved in import of maltose/maltodextrin;gbkey=CDS;product=maltose/maltodextrin import ATP-binding protein MalK;protein_id=WP_005106218.1;transl_table=11 NC_008258.1 RefSeq gene 4314581 4314676 . + . ID=gene4577;Name=SFV_RS22990;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS22990 NC_008258.1 Protein Homology CDS 4314581 4314676 . + 0 ID=cds4467;Parent=gene4577;Dbxref=Genbank:WP_024166609.1;Name=WP_024166609.1;gbkey=CDS;product=sugar ABC transporter;protein_id=WP_024166609.1;transl_table=11 NC_008258.1 RefSeq gene 4314769 4315959 . + . ID=gene4578;Name=malE;gbkey=Gene;gene=malE;gene_biotype=protein_coding;locus_tag=SFV_RS22995;old_locus_tag=SFV_4180 NC_008258.1 Protein Homology CDS 4314769 4315959 . + 0 ID=cds4468;Parent=gene4578;Dbxref=Genbank:WP_000695390.1;Name=WP_000695390.1;Note=functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis;gbkey=CDS;gene=malE;product=maltose ABC transporter substrate-binding protein;protein_id=WP_000695390.1;transl_table=11 NC_008258.1 RefSeq gene 4316021 4317565 . + . ID=gene4579;Name=malF;gbkey=Gene;gene=malF;gene_biotype=protein_coding;locus_tag=SFV_RS23000;old_locus_tag=SFV_4181 NC_008258.1 Protein Homology CDS 4316021 4317565 . + 0 ID=cds4469;Parent=gene4579;Dbxref=Genbank:WP_001297290.1;Name=WP_001297290.1;Note=with MalKGE is involved in maltose transport into the cell;gbkey=CDS;gene=malF;product=maltose ABC transporter permease;protein_id=WP_001297290.1;transl_table=11 NC_008258.1 RefSeq gene 4317580 4318470 . + . ID=gene4580;Name=malG;gbkey=Gene;gene=malG;gene_biotype=protein_coding;locus_tag=SFV_RS23005;old_locus_tag=SFV_4182 NC_008258.1 Protein Homology CDS 4317580 4318470 . + 0 ID=cds4470;Parent=gene4580;Dbxref=Genbank:WP_001252089.1;Name=WP_001252089.1;Note=with MalKFE is involved in the transport of maltose into the cell;gbkey=CDS;gene=malG;product=maltose ABC transporter permease;protein_id=WP_001252089.1;transl_table=11 NC_008258.1 RefSeq gene 4318842 4320318 . + . ID=gene4581;Name=xylE;gbkey=Gene;gene=xylE;gene_biotype=pseudogene;locus_tag=SFV_RS23010;pseudo=true NC_008258.1 Protein Homology CDS 4318842 4320318 . + 0 ID=cds4471;Parent=gene4581;Note=xylose/proton symporter%3B member of the major facilitator superfamily (MFS) of transporter;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=xylE;product=D-xylose transporter XylE;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4320362 4320772 . - . ID=gene4582;Name=SFV_RS23015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23015;old_locus_tag=SFV_4184 NC_008258.1 Protein Homology CDS 4320362 4320772 . - 0 ID=cds4472;Parent=gene4582;Dbxref=Genbank:WP_000202897.1;Name=WP_000202897.1;gbkey=CDS;product=protein PsiE;protein_id=WP_000202897.1;transl_table=11 NC_008258.1 RefSeq gene 4320898 4321041 . - . ID=gene4583;Name=SFV_RS23025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23025 NC_008258.1 Protein Homology CDS 4320898 4321041 . - 0 ID=cds4473;Parent=gene4583;Dbxref=Genbank:WP_000487765.1;Name=WP_000487765.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000487765.1;transl_table=11 NC_008258.1 RefSeq gene 4321042 4321320 . + . ID=gene4584;Name=SFV_RS23030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23030 NC_008258.1 Protein Homology CDS 4321042 4321320 . + 0 ID=cds4474;Parent=gene4584;Dbxref=Genbank:WP_001295279.1;Name=WP_001295279.1;gbkey=CDS;product=periplasmic protein;protein_id=WP_001295279.1;transl_table=11 NC_008258.1 RefSeq gene 4321367 4323463 . - . ID=gene4585;Name=SFV_RS23035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23035;old_locus_tag=SFV_4185 NC_008258.1 Protein Homology CDS 4321367 4323463 . - 0 ID=cds4475;Parent=gene4585;Dbxref=Genbank:WP_000745743.1;Name=WP_000745743.1;gbkey=CDS;product=membrane protein;protein_id=WP_000745743.1;transl_table=11 NC_008258.1 RefSeq gene 4323463 4324220 . - . ID=gene4586;Name=SFV_RS23040;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23040;old_locus_tag=SFV_4186;pseudo=true NC_008258.1 Protein Homology CDS 4323463 4324220 . - 0 ID=cds4476;Parent=gene4586;exception=annotated by transcript or proteomic data;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4324217 4324855 . - . ID=gene4587;Name=SFV_RS23045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23045;old_locus_tag=SFV_4187 NC_008258.1 Protein Homology CDS 4324217 4324855 . - 0 ID=cds4477;Parent=gene4587;Dbxref=Genbank:WP_005106225.1;Name=WP_005106225.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106225.1;transl_table=11 NC_008258.1 RefSeq gene 4324969 4325211 . - . ID=gene4588;Name=SFV_RS23050;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23050 NC_008258.1 Protein Homology CDS 4324969 4325211 . - 0 ID=cds4478;Parent=gene4588;Dbxref=Genbank:WP_000757326.1;Name=WP_000757326.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000757326.1;transl_table=11 NC_008258.1 RefSeq gene 4325673 4327322 . - . ID=gene4589;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=SFV_RS23055;old_locus_tag=SFV_4188 NC_008258.1 Protein Homology CDS 4325673 4327322 . - 0 ID=cds4479;Parent=gene4589;Dbxref=Genbank:WP_000790014.1;Name=WP_000790014.1;Note=functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis%3B catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate%3B member of PGI family;gbkey=CDS;gene=pgi;product=glucose-6-phosphate isomerase;protein_id=WP_000790014.1;transl_table=11 NC_008258.1 RefSeq gene 4327847 4329196 . + . ID=gene4590;Name=SFV_RS23060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23060;old_locus_tag=SFV_4189 NC_008258.1 Protein Homology CDS 4327847 4329196 . + 0 ID=cds4480;Parent=gene4590;Dbxref=Genbank:WP_001290322.1;Name=WP_001290322.1;Note=catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP%3B functions in amino acid biosynthesis%3B lysine sensitive;gbkey=CDS;product=aspartate kinase;protein_id=WP_001290322.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4329328 4333401 . + . ID=id676;gbkey=repeat_region NC_008258.1 RefSeq region 4329330 4332083 . + . ID=id677;gbkey=mobile_element NC_008258.1 RefSeq gene 4329362 4330963 . - . ID=gene4591;Name=SFV_RS23065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23065;old_locus_tag=SFV_4190 NC_008258.1 Protein Homology CDS 4329362 4330963 . - 0 ID=cds4481;Parent=gene4591;Dbxref=Genbank:WP_005106228.1;Name=WP_005106228.1;gbkey=CDS;product=transposase;protein_id=WP_005106228.1;transl_table=11 NC_008258.1 RefSeq gene 4330983 4331330 . - . ID=gene4592;Name=SFV_RS23070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23070;old_locus_tag=SFV_4191 NC_008258.1 Protein Homology CDS 4330983 4331330 . - 0 ID=cds4482;Parent=gene4592;Dbxref=Genbank:WP_000631712.1;Name=WP_000631712.1;gbkey=CDS;product=transposase;protein_id=WP_000631712.1;transl_table=11 NC_008258.1 RefSeq gene 4331327 4332001 . - . ID=gene4593;Name=SFV_RS23075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23075;old_locus_tag=SFV_4192 NC_008258.1 Protein Homology CDS 4331327 4332001 . - 0 ID=cds4483;Parent=gene4593;Dbxref=Genbank:WP_001088287.1;Name=WP_001088287.1;gbkey=CDS;product=transposase;protein_id=WP_001088287.1;transl_table=11 NC_008258.1 RefSeq region 4332084 4333400 . + . ID=id678;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 4332161 4332526 . + . ID=gene4594;Name=SFV_RS23080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23080;old_locus_tag=SFV_4193 NC_008258.1 Protein Homology CDS 4332161 4332526 . + 0 ID=cds4484;Parent=gene4594;Dbxref=Genbank:WP_000567766.1;Name=WP_000567766.1;Note=represses IS2 gene transcription;gbkey=CDS;product=transposase;protein_id=WP_000567766.1;transl_table=11 NC_008258.1 RefSeq gene 4332484 4333389 . + . ID=gene4595;Name=SFV_RS23085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23085;old_locus_tag=SFV_4194 NC_008258.1 Protein Homology CDS 4332484 4333389 . + 0 ID=cds4485;Parent=gene4595;Dbxref=Genbank:WP_000376500.1;Name=WP_000376500.1;gbkey=CDS;product=integrase;protein_id=WP_000376500.1;transl_table=11 NC_008258.1 RefSeq gene 4333588 4334172 . - . ID=gene4596;Name=SFV_RS23090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23090;old_locus_tag=SFV_4195 NC_008258.1 Protein Homology CDS 4333588 4334172 . - 0 ID=cds4486;Parent=gene4596;Dbxref=Genbank:WP_005048967.1;Name=WP_005048967.1;Note=in yeast cells this enzyme removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate%3B functions in tRNA splicing%3B the function and substrate of bacterial enzymes in organisms that do not perform splicing is unknown;gbkey=CDS;product=RNA 2'-phosphotransferase;protein_id=WP_005048967.1;transl_table=11 NC_008258.1 RefSeq gene 4334422 4335105 . + . ID=gene4597;Name=SFV_RS23095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23095;old_locus_tag=SFV_4196 NC_008258.1 Protein Homology CDS 4334422 4335105 . + 0 ID=cds4487;Parent=gene4597;Dbxref=Genbank:WP_005106230.1;Name=WP_005106230.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106230.1;transl_table=11 NC_008258.1 RefSeq gene 4335102 4335563 . + . ID=gene4598;Name=SFV_RS23100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23100;old_locus_tag=SFV_4197 NC_008258.1 Protein Homology CDS 4335102 4335563 . + 0 ID=cds4488;Parent=gene4598;Dbxref=Genbank:WP_000211962.1;Name=WP_000211962.1;gbkey=CDS;product=membrane protein;protein_id=WP_000211962.1;transl_table=11 NC_008258.1 RefSeq gene 4335576 4336748 . + . ID=gene4599;Name=SFV_RS23105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23105;old_locus_tag=SFV_4198 NC_008258.1 Protein Homology CDS 4335576 4336748 . + 0 ID=cds4489;Parent=gene4599;Dbxref=Genbank:WP_000568430.1;Name=WP_000568430.1;gbkey=CDS;product=isoaspartyl dipeptidase;protein_id=WP_000568430.1;transl_table=11 NC_008258.1 RefSeq gene 4336813 4337724 . + . ID=gene4600;Name=SFV_RS23110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23110;old_locus_tag=SFV_4199 NC_008258.1 Protein Homology CDS 4336813 4337724 . + 0 ID=cds4490;Parent=gene4600;Dbxref=Genbank:WP_000340759.1;Name=WP_000340759.1;gbkey=CDS;product=cell density-dependent motility repressor;protein_id=WP_000340759.1;transl_table=11 NC_008258.1 RefSeq gene 4337717 4338109 . - . ID=gene4601;Name=iraD;gbkey=Gene;gene=iraD;gene_biotype=protein_coding;locus_tag=SFV_RS23115;old_locus_tag=SFV_4200 NC_008258.1 Protein Homology CDS 4337717 4338109 . - 0 ID=cds4491;Parent=gene4601;Dbxref=Genbank:WP_000986206.1;Name=WP_000986206.1;Note=inhibitor of RssB activity in response to DNA damage%3B blocks degradation of stationary phase sigma factor RpoS;gbkey=CDS;gene=iraD;product=anti-adapter protein IraD;protein_id=WP_000986206.1;transl_table=11 NC_008258.1 RefSeq gene 4338075 4338209 . - . ID=gene4602;Name=SFV_RS23120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23120 NC_008258.1 Protein Homology CDS 4338075 4338209 . - 0 ID=cds4492;Parent=gene4602;Dbxref=Genbank:WP_001295738.1;Name=WP_001295738.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295738.1;transl_table=11 NC_008258.1 RefSeq gene 4338691 4338810 . + . ID=gene4603;Name=SFV_RS24540;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24540;pseudo=true NC_008258.1 Protein Homology CDS 4338691 4338810 . + 0 ID=cds4493;Parent=gene4603;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:4338757..4338759%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4338782 4339612 . + . ID=gene4604;Name=SFV_RS23125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23125;old_locus_tag=SFV_4201 NC_008258.1 Protein Homology CDS 4338782 4339612 . + 0 ID=cds4494;Parent=gene4604;Dbxref=Genbank:WP_000062539.1;Name=WP_000062539.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000062539.1;transl_table=11 NC_008258.1 RefSeq gene 4339753 4340526 . - . ID=gene4605;Name=SFV_RS23130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23130;old_locus_tag=SFV_4202 NC_008258.1 Protein Homology CDS 4339753 4340526 . - 0 ID=cds4495;Parent=gene4605;Dbxref=Genbank:WP_000844159.1;Name=WP_000844159.1;Note=regulates the expression of uxuBA;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000844159.1;transl_table=11 NC_008258.1 RefSeq gene 4340525 4340719 . + . ID=gene4606;Name=SFV_RS23135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23135 NC_008258.1 Protein Homology CDS 4340525 4340719 . + 0 ID=cds4496;Parent=gene4606;Dbxref=Genbank:WP_000242065.1;Name=WP_000242065.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000242065.1;transl_table=11 NC_008258.1 RefSeq gene 4340741 4342201 . - . ID=gene4607;Name=SFV_RS23140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23140;old_locus_tag=SFV_4203 NC_008258.1 Protein Homology CDS 4340741 4342201 . - 0 ID=cds4497;Parent=gene4607;Dbxref=Genbank:WP_000208166.1;Name=WP_000208166.1;gbkey=CDS;product=D-mannonate oxidoreductase;protein_id=WP_000208166.1;transl_table=11 NC_008258.1 RefSeq gene 4342282 4343466 . - . ID=gene4608;Name=SFV_RS23145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23145;old_locus_tag=SFV_4204 NC_008258.1 Protein Homology CDS 4342282 4343466 . - 0 ID=cds4498;Parent=gene4608;Dbxref=Genbank:WP_000438582.1;Name=WP_000438582.1;Note=catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate;gbkey=CDS;product=mannonate dehydratase;protein_id=WP_000438582.1;transl_table=11 NC_008258.1 RefSeq gene 4343418 4343726 . - . ID=gene4609;Name=SFV_RS23150;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23150 NC_008258.1 Protein Homology CDS 4343418 4343726 . - 0 ID=cds4499;Parent=gene4609;Dbxref=Genbank:WP_032319920.1;Name=WP_032319920.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032319920.1;transl_table=11 NC_008258.1 RefSeq gene 4343806 4345149 . + . ID=gene4610;Name=SFV_RS23155;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23155;old_locus_tag=SFV_4205 NC_008258.1 Protein Homology CDS 4343806 4345149 . + 0 ID=cds4500;Parent=gene4610;Dbxref=Genbank:WP_000558239.1;Name=WP_000558239.1;gbkey=CDS;product=idonate transporter;protein_id=WP_000558239.1;transl_table=11 NC_008258.1 RefSeq gene 4345400 4346302 . - . ID=gene4611;Name=SFV_RS23160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23160;old_locus_tag=SFV_4206 NC_008258.1 Protein Homology CDS 4345400 4346302 . - 0 ID=cds4501;Parent=gene4611;Dbxref=Genbank:WP_000816511.1;Name=WP_000816511.1;gbkey=CDS;product=fimbrial protein FimH;protein_id=WP_000816511.1;transl_table=11 NC_008258.1 RefSeq gene 4346322 4346825 . - . ID=gene4612;Name=SFV_RS23165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23165;old_locus_tag=SFV_4207 NC_008258.1 Protein Homology CDS 4346322 4346825 . - 0 ID=cds4502;Parent=gene4612;Dbxref=Genbank:WP_000870598.1;Name=WP_000870598.1;gbkey=CDS;product=fimbrial protein FimG;protein_id=WP_000870598.1;transl_table=11 NC_008258.1 RefSeq gene 4346838 4347368 . - . ID=gene4613;Name=SFV_RS23170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23170;old_locus_tag=SFV_4208 NC_008258.1 Protein Homology CDS 4346838 4347368 . - 0 ID=cds4503;Parent=gene4613;Dbxref=Genbank:WP_001244836.1;Name=WP_001244836.1;gbkey=CDS;product=fimbrial protein FimF;protein_id=WP_001244836.1;transl_table=11 NC_008258.1 RefSeq gene 4347378 4350014 . - . ID=gene4614;Name=SFV_RS23175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23175;old_locus_tag=SFV_4209 NC_008258.1 Protein Homology CDS 4347378 4350014 . - 0 ID=cds4504;Parent=gene4614;Dbxref=Genbank:WP_000120994.1;Name=WP_000120994.1;gbkey=CDS;product=fimbrial protein FimD;protein_id=WP_000120994.1;transl_table=11 NC_008258.1 RefSeq gene 4350081 4350806 . - . ID=gene4615;Name=SFV_RS23180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23180;old_locus_tag=SFV_4210 NC_008258.1 Protein Homology CDS 4350081 4350806 . - 0 ID=cds4505;Parent=gene4615;Dbxref=Genbank:WP_000066576.1;Name=WP_000066576.1;gbkey=CDS;product=fimbrial chaperone protein FimC;protein_id=WP_000066576.1;transl_table=11 NC_008258.1 RefSeq gene 4350843 4351340 . - . ID=gene4616;Name=SFV_RS23185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23185 NC_008258.1 Protein Homology CDS 4350843 4351340 . - 0 ID=cds4506;Parent=gene4616;Dbxref=Genbank:WP_005086500.1;Name=WP_005086500.1;gbkey=CDS;product=fimbrin fimI;protein_id=WP_005086500.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4351401 4352175 . + . ID=id679;gbkey=repeat_region NC_008258.1 RefSeq region 4351404 4352171 . + . ID=id680;gbkey=mobile_element NC_008258.1 RefSeq gene 4351653 4352156 . + . ID=gene4617;Name=SFV_RS23190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23190;old_locus_tag=SFV_4211 NC_008258.1 Protein Homology CDS 4351653 4352156 . + 0 ID=cds4507;Parent=gene4617;Dbxref=Genbank:WP_000089792.1;Name=WP_000089792.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_000089792.1;transl_table=11 NC_008258.1 RefSeq gene 4352224 4352772 . - . ID=gene4618;Name=fimA;gbkey=Gene;gene=fimA;gene_biotype=protein_coding;locus_tag=SFV_RS23195;old_locus_tag=SFV_4213 NC_008258.1 Protein Homology CDS 4352224 4352772 . - 0 ID=cds4508;Parent=gene4618;Dbxref=Genbank:WP_000695529.1;Name=WP_000695529.1;gbkey=CDS;gene=fimA;product=type-1 fimbrial protein subunit A;protein_id=WP_000695529.1;transl_table=11 NC_008258.1 RefSeq gene 4353253 4353849 . - . ID=gene4619;Name=SFV_RS23205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23205;old_locus_tag=SFV_4214 NC_008258.1 Protein Homology CDS 4353253 4353849 . - 0 ID=cds4509;Parent=gene4619;Dbxref=Genbank:WP_000044711.1;Name=WP_000044711.1;Note=inversion of on/off regulator of fimA;gbkey=CDS;product=type 1 fimbriae regulatory protein FimE;protein_id=WP_000044711.1;transl_table=11 NC_008258.1 RefSeq gene 4354444 4354929 . - . ID=gene4620;Name=SFV_RS23210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23210;old_locus_tag=SFV_4215 NC_008258.1 Protein Homology CDS 4354444 4354929 . - 0 ID=cds4510;Parent=gene4620;Dbxref=Genbank:WP_001244603.1;Name=WP_001244603.1;gbkey=CDS;product=tyrosine recombinase;protein_id=WP_001244603.1;transl_table=11 NC_008258.1 RefSeq gene 4355339 4355584 . + . ID=gene4621;Name=SFV_RS23215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23215 NC_008258.1 Protein Homology CDS 4355339 4355584 . + 0 ID=cds4511;Parent=gene4621;Dbxref=Genbank:WP_024259336.1;Name=WP_024259336.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_024259336.1;transl_table=11 NC_008258.1 RefSeq gene 4355866 4356012 . - . ID=gene4622;Name=SFV_RS23220;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23220 NC_008258.1 Protein Homology CDS 4355866 4356012 . - 0 ID=cds4512;Parent=gene4622;Dbxref=Genbank:WP_032155640.1;Name=WP_032155640.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155640.1;transl_table=11 NC_008258.1 RefSeq gene 4356551 4357099 . + . ID=gene4623;Name=SFV_RS23225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23225 NC_008258.1 Protein Homology CDS 4356551 4357099 . + 0 ID=cds4513;Parent=gene4623;Dbxref=Genbank:WP_000445580.1;Name=WP_000445580.1;gbkey=CDS;product=porin;protein_id=WP_000445580.1;transl_table=11 NC_008258.1 RefSeq gene 4357119 4358225 . + . ID=gene4624;Name=SFV_RS23230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23230;old_locus_tag=SFV_4217 NC_008258.1 Protein Homology CDS 4357119 4358225 . + 0 ID=cds4514;Parent=gene4624;Dbxref=Genbank:WP_005048917.1;Name=WP_005048917.1;gbkey=CDS;product=N-acetylneuraminate epimerase;protein_id=WP_005048917.1;transl_table=11 NC_008258.1 RefSeq gene 4358290 4359270 . + . ID=gene4625;Name=SFV_RS23235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23235;old_locus_tag=SFV_4218 NC_008258.1 Protein Homology CDS 4358290 4359270 . + 0 ID=cds4515;Parent=gene4625;Dbxref=Genbank:WP_000991455.1;Name=WP_000991455.1;gbkey=CDS;product=9-O-acetyl-N-acetylneuraminic acid deacetylase;protein_id=WP_000991455.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4359721 4360495 . + . ID=id681;gbkey=repeat_region NC_008258.1 RefSeq region 4359724 4360491 . - . ID=id682;gbkey=mobile_element NC_008258.1 RefSeq gene 4359739 4360242 . - . ID=gene4626;Name=SFV_RS23240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23240;old_locus_tag=SFV_4219 NC_008258.1 Protein Homology CDS 4359739 4360242 . - 0 ID=cds4516;Parent=gene4626;Dbxref=Genbank:WP_005046770.1;Name=WP_005046770.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005046770.1;transl_table=11 NC_008258.1 RefSeq gene 4360531 4361226 . + . ID=gene4627;Name=SFV_RS23245;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23245;old_locus_tag=SFV_4221 NC_008258.1 Protein Homology CDS 4360531 4361226 . + 0 ID=cds4517;Parent=gene4627;Dbxref=Genbank:WP_000895311.1;Name=WP_000895311.1;gbkey=CDS;product=DeoR family transcriptional regulator;protein_id=WP_000895311.1;transl_table=11 NC_008258.1 RefSeq gene 4361228 4361326 . - . ID=gene4628;Name=SFV_RS23250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23250 NC_008258.1 Protein Homology CDS 4361228 4361326 . - 0 ID=cds4518;Parent=gene4628;Dbxref=Genbank:WP_001387298.1;Name=WP_001387298.1;gbkey=CDS;product=acetolactate synthase;protein_id=WP_001387298.1;transl_table=11 NC_008258.1 RefSeq gene 4361327 4361443 . - . ID=gene4629;Name=SFV_RS23255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23255;old_locus_tag=SFV_4222 NC_008258.1 Protein Homology CDS 4361327 4361443 . - 0 ID=cds4519;Parent=gene4629;Dbxref=Genbank:WP_005106244.1;Name=WP_005106244.1;gbkey=CDS;product=acetolactate synthase;protein_id=WP_005106244.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4361638 4363016 . + . ID=id683;gbkey=repeat_region NC_008258.1 RefSeq gene 4361702 4361980 . + . ID=gene4630;Name=SFV_RS23260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23260;old_locus_tag=SFV_4223 NC_008258.1 Protein Homology CDS 4361702 4361980 . + 0 ID=cds4520;Parent=gene4630;Dbxref=Genbank:WP_000015547.1;Name=WP_000015547.1;gbkey=CDS;product=transposase;protein_id=WP_000015547.1;transl_table=11 NC_008258.1 RefSeq region 4361985 4362244 . + . ID=id684;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 4362049 4362243 . + . ID=gene4631;Name=SFV_RS23265;end_range=4362243,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23265;old_locus_tag=SFV_4224;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 4362049 4362243 . + 0 ID=cds4521;Parent=gene4631;end_range=4362243,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq region 4362245 4363012 . + . ID=id685;gbkey=mobile_element NC_008258.1 RefSeq gene 4362351 4362575 . + . ID=gene4632;Name=SFV_RS23270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23270 NC_008258.1 Protein Homology CDS 4362351 4362575 . + 0 ID=cds4522;Parent=gene4632;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4362602 4362997 . + . ID=gene4633;Name=SFV_RS23275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23275 NC_008258.1 Protein Homology CDS 4362602 4362997 . + 0 ID=cds4523;Parent=gene4633;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 4363338 4364531 . - . ID=gene4634;Name=SFV_RS23280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23280;old_locus_tag=SFV_4227 NC_008258.1 Protein Homology CDS 4363338 4364531 . - 0 ID=cds4524;Parent=gene4634;Dbxref=Genbank:WP_005106250.1;Name=WP_005106250.1;gbkey=CDS;product=integrase;protein_id=WP_005106250.1;transl_table=11 NC_008258.1 RefSeq gene 4364730 4364814 . - . ID=gene4635;Name=SFV_RS23285;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS23285;old_locus_tag=SFV_4228 NC_008258.1 tRNAscan-SE tRNA 4364730 4364814 . - . ID=rna110;Parent=gene4635;anticodon=(pos:complement(4364778..4364780));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 4364730 4364814 . - . ID=id686;Parent=rna110;anticodon=(pos:complement(4364778..4364780));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 4365010 4366029 . + . ID=gene4636;Name=SFV_RS23290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23290;old_locus_tag=SFV_4229 NC_008258.1 Protein Homology CDS 4365010 4366029 . + 0 ID=cds4525;Parent=gene4636;Dbxref=Genbank:WP_001299662.1;Name=WP_001299662.1;gbkey=CDS;product=aldehyde reductase Ahr;protein_id=WP_001299662.1;transl_table=11 NC_008258.1 RefSeq gene 4366158 4367660 . + . ID=gene4637;Name=SFV_RS23295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23295;old_locus_tag=SFV_4230 NC_008258.1 Protein Homology CDS 4366158 4367660 . + 0 ID=cds4526;Parent=gene4637;Dbxref=Genbank:WP_005106252.1;Name=WP_005106252.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106252.1;transl_table=11 NC_008258.1 RefSeq gene 4367779 4368861 . - . ID=gene4638;Name=SFV_RS23300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23300;old_locus_tag=SFV_4231 NC_008258.1 Protein Homology CDS 4367779 4368861 . - 0 ID=cds4527;Parent=gene4638;Dbxref=Genbank:WP_005106254.1;Name=WP_005106254.1;Note=with LptABCF is involved in the transport of lipopolysaccharides;gbkey=CDS;product=LPS export ABC transporter permease LptG;protein_id=WP_005106254.1;transl_table=11 NC_008258.1 RefSeq gene 4368861 4369961 . - . ID=gene4639;Name=SFV_RS23305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23305;old_locus_tag=SFV_4232 NC_008258.1 Protein Homology CDS 4368861 4369961 . - 0 ID=cds4528;Parent=gene4639;Dbxref=Genbank:WP_000584114.1;Name=WP_000584114.1;Note=with LptBGC is involved in lipopolysaccharide export;gbkey=CDS;product=LPS export ABC transporter permease LptF;protein_id=WP_000584114.1;transl_table=11 NC_008258.1 RefSeq gene 4370228 4371739 . + . ID=gene4640;Name=SFV_RS23310;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23310;old_locus_tag=SFV_4233 NC_008258.1 Protein Homology CDS 4370228 4371739 . + 0 ID=cds4529;Parent=gene4640;Dbxref=Genbank:WP_000397144.1;Name=WP_000397144.1;Note=catalyzes the removal of N-terminal amino acids preferably from various peptides%3B a cyteinylglycinase%2C transcription regulator and site-specific recombination factor;gbkey=CDS;product=cytosol aminopeptidase;protein_id=WP_000397144.1;transl_table=11 NC_008258.1 RefSeq gene 4371873 4372316 . + . ID=gene4641;Name=SFV_RS23315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23315;old_locus_tag=SFV_4234 NC_008258.1 Protein Homology CDS 4371873 4372316 . + 0 ID=cds4530;Parent=gene4641;Dbxref=Genbank:WP_000786399.1;Name=WP_000786399.1;Note=binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit chi;protein_id=WP_000786399.1;transl_table=11 NC_008258.1 RefSeq gene 4372316 4375171 . + . ID=gene4642;Name=SFV_RS23320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23320;old_locus_tag=SFV_4235 NC_008258.1 Protein Homology CDS 4372316 4375171 . + 0 ID=cds4531;Parent=gene4642;Dbxref=Genbank:WP_000416320.1;Name=WP_000416320.1;gbkey=CDS;product=valine--tRNA ligase;protein_id=WP_000416320.1;transl_table=11 NC_008258.1 RefSeq gene 4375225 4376421 . - . ID=gene4643;Name=SFV_RS23325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23325;old_locus_tag=SFV_4236 NC_008258.1 Protein Homology CDS 4375225 4376421 . - 0 ID=cds4532;Parent=gene4643;Dbxref=Genbank:WP_000079615.1;Name=WP_000079615.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000079615.1;transl_table=11 NC_008258.1 RefSeq gene 4376614 4377117 . + . ID=gene4644;Name=SFV_RS23330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23330;old_locus_tag=SFV_4237 NC_008258.1 Protein Homology CDS 4376614 4377117 . + 0 ID=cds4533;Parent=gene4644;Dbxref=Genbank:WP_001059408.1;Name=WP_001059408.1;gbkey=CDS;product=N-acetyltransferase;protein_id=WP_001059408.1;transl_table=11 NC_008258.1 RefSeq gene 4377163 4377579 . - . ID=gene4645;Name=SFV_RS23335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23335;old_locus_tag=SFV_4238 NC_008258.1 Protein Homology CDS 4377163 4377579 . - 0 ID=cds4534;Parent=gene4645;Dbxref=Genbank:WP_000002953.1;Name=WP_000002953.1;gbkey=CDS;product=regulator of ribonuclease activity B;protein_id=WP_000002953.1;transl_table=11 NC_008258.1 RefSeq gene 4377741 4378754 . + . ID=gene4646;Name=SFV_RS23340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23340;old_locus_tag=SFV_4239 NC_008258.1 Protein Homology CDS 4377741 4378754 . + 0 ID=cds4535;Parent=gene4646;Dbxref=Genbank:WP_000012918.1;Name=WP_000012918.1;Note=catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway;gbkey=CDS;product=ornithine carbamoyltransferase;protein_id=WP_000012918.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4378768 4379540 . + . ID=id687;gbkey=repeat_region NC_008258.1 RefSeq region 4378771 4379538 . + . ID=id688;gbkey=mobile_element NC_008258.1 RefSeq gene 4378877 4379101 . + . ID=gene4647;Name=SFV_RS23345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23345 NC_008258.1 Protein Homology CDS 4378877 4379101 . + 0 ID=cds4536;Parent=gene4647;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4379128 4379523 . + . ID=gene4648;Name=SFV_RS23350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23350 NC_008258.1 Protein Homology CDS 4379128 4379523 . + 0 ID=cds4537;Parent=gene4648;Dbxref=Genbank:WP_024260323.1;Name=WP_024260323.1;gbkey=CDS;product=transposase;protein_id=WP_024260323.1;transl_table=11 NC_008258.1 RefSeq gene 4379543 4380262 . - . ID=gene4649;Name=SFV_RS23355;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23355;old_locus_tag=SFV_4242;partial=true;pseudo=true;start_range=.,4379543 NC_008258.1 Protein Homology CDS 4379543 4380262 . - 0 ID=cds4538;Parent=gene4649;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4379543;transl_table=11 NC_008258.1 RefSeq gene 4380385 4380837 . - . ID=gene4650;Name=SFV_RS23360;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23360;old_locus_tag=SFV_4243 NC_008258.1 Protein Homology CDS 4380385 4380837 . - 0 ID=cds4539;Parent=gene4650;Dbxref=Genbank:WP_000583469.1;Name=WP_000583469.1;gbkey=CDS;product=DUF386 domain-containing protein;protein_id=WP_000583469.1;transl_table=11 NC_008258.1 RefSeq gene 4380982 4381575 . - . ID=gene4651;Name=SFV_RS23365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23365;old_locus_tag=SFV_4244 NC_008258.1 Protein Homology CDS 4380982 4381575 . - 0 ID=cds4540;Parent=gene4651;Dbxref=Genbank:WP_000256684.1;Name=WP_000256684.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_000256684.1;transl_table=11 NC_008258.1 RefSeq gene 4381646 4382359 . + . ID=gene4652;Name=SFV_RS23370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23370;old_locus_tag=SFV_4245 NC_008258.1 Protein Homology CDS 4381646 4382359 . + 0 ID=cds4541;Parent=gene4652;Dbxref=Genbank:WP_000500714.1;Name=WP_000500714.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000500714.1;transl_table=11 NC_008258.1 RefSeq gene 4382491 4382886 . + . ID=gene4653;Name=SFV_RS23375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23375;old_locus_tag=SFV_4246 NC_008258.1 Protein Homology CDS 4382491 4382886 . + 0 ID=cds4542;Parent=gene4653;Dbxref=Genbank:WP_000230273.1;Name=WP_000230273.1;gbkey=CDS;product=endoribonuclease L-PSP;protein_id=WP_000230273.1;transl_table=11 NC_008258.1 RefSeq gene 4382855 4383187 . - . ID=gene4654;Name=SFV_RS23380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23380 NC_008258.1 Protein Homology CDS 4382855 4383187 . - 0 ID=cds4543;Parent=gene4654;Dbxref=Genbank:WP_011069606.1;Name=WP_011069606.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_011069606.1;transl_table=11 NC_008258.1 RefSeq gene 4383167 4383301 . + . ID=gene4655;Name=SFV_RS23385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23385 NC_008258.1 Protein Homology CDS 4383167 4383301 . + 0 ID=cds4544;Parent=gene4655;Dbxref=Genbank:WP_011069607.1;Name=WP_011069607.1;gbkey=CDS;product=pyrBI operon leader peptide;protein_id=WP_011069607.1;transl_table=11 NC_008258.1 RefSeq gene 4383305 4384240 . + . ID=gene4656;Name=SFV_RS23390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23390;old_locus_tag=SFV_4247 NC_008258.1 Protein Homology CDS 4383305 4384240 . + 0 ID=cds4545;Parent=gene4656;Dbxref=Genbank:WP_000013046.1;Name=WP_000013046.1;gbkey=CDS;product=aspartate carbamoyltransferase catalytic subunit;protein_id=WP_000013046.1;transl_table=11 NC_008258.1 RefSeq gene 4384253 4384714 . + . ID=gene4657;Name=SFV_RS23395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23395;old_locus_tag=SFV_4248 NC_008258.1 Protein Homology CDS 4384253 4384714 . + 0 ID=cds4546;Parent=gene4657;Dbxref=Genbank:WP_000148585.1;Name=WP_000148585.1;Note=involved in the allosteric regulation of aspartate carbamoyltransferase;gbkey=CDS;product=aspartate carbamoyltransferase regulatory chain;protein_id=WP_000148585.1;transl_table=11 NC_008258.1 RefSeq gene 4384787 4385173 . + . ID=gene4658;Name=SFV_RS23400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23400;old_locus_tag=SFV_4249 NC_008258.1 Protein Homology CDS 4384787 4385173 . + 0 ID=cds4547;Parent=gene4658;Dbxref=Genbank:WP_000047539.1;Name=WP_000047539.1;Note=has endoribonuclease activity on mRNA;gbkey=CDS;product=reactive intermediate/imine deaminase;protein_id=WP_000047539.1;transl_table=11 NC_008258.1 RefSeq gene 4385379 4388075 . - . ID=gene4659;Name=SFV_RS23405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23405;old_locus_tag=SFV_4250 NC_008258.1 Protein Homology CDS 4385379 4388075 . - 0 ID=cds4548;Parent=gene4659;Dbxref=Genbank:WP_000471841.1;Name=WP_000471841.1;Note=P-type%3B involved in magnesium transport into the cytoplasm;gbkey=CDS;product=magnesium-translocating P-type ATPase;protein_id=WP_000471841.1;transl_table=11 NC_008258.1 RefSeq gene 4388454 4389401 . + . ID=gene4660;Name=treR;gbkey=Gene;gene=treR;gene_biotype=protein_coding;locus_tag=SFV_RS23410;old_locus_tag=SFV_4251 NC_008258.1 Protein Homology CDS 4388454 4389401 . + 0 ID=cds4549;Parent=gene4660;Dbxref=Genbank:WP_001181311.1;Name=WP_001181311.1;Note=regulates genes involved in trehalose metabolism%3B binds the intermediate trehalose-6-phosphate%3B binds a dimer%3B regulates treBC operon;gbkey=CDS;gene=treR;product=trehalose repressor;protein_id=WP_001181311.1;transl_table=11 NC_008258.1 RefSeq gene 4389523 4390941 . + . ID=gene4661;Name=SFV_RS23415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23415 NC_008258.1 Protein Homology CDS 4389523 4390941 . + 0 ID=cds4550;Parent=gene4661;Dbxref=Genbank:WP_000036120.1;Name=WP_000036120.1;Note=phosphoenolpyruvate-dependent sugar phosphotransferase system%3B catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane%3B IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel;gbkey=CDS;product=PTS maltose transporter subunit IIBC;protein_id=WP_000036120.1;transl_table=11 NC_008258.1 RefSeq gene 4390991 4392646 . + . ID=gene4662;Name=SFV_RS23420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23420;old_locus_tag=SFV_4252 NC_008258.1 Protein Homology CDS 4390991 4392646 . + 0 ID=cds4551;Parent=gene4662;Dbxref=Genbank:WP_024260324.1;Name=WP_024260324.1;gbkey=CDS;product=trehalose-6-phosphate hydrolase;protein_id=WP_024260324.1;transl_table=11 NC_008258.1 RefSeq gene 4393040 4395178 . + . ID=gene4663;Name=SFV_RS23425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23425;old_locus_tag=SFV_4253 NC_008258.1 Protein Homology CDS 4393040 4395178 . + 0 ID=cds4552;Parent=gene4663;Dbxref=Genbank:WP_000187769.1;Name=WP_000187769.1;Note=Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates;gbkey=CDS;product=ribonucleoside triphosphate reductase;protein_id=WP_000187769.1;transl_table=11 NC_008258.1 RefSeq gene 4395336 4395800 . + . ID=gene4664;Name=SFV_RS23430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23430;old_locus_tag=SFV_4254 NC_008258.1 Protein Homology CDS 4395336 4395800 . + 0 ID=cds4553;Parent=gene4664;Dbxref=Genbank:WP_001106222.1;Name=WP_001106222.1;Note=activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions;gbkey=CDS;product=anaerobic ribonucleotide reductase-activating protein;protein_id=WP_001106222.1;transl_table=11 NC_008258.1 RefSeq gene 4395845 4396231 . - . ID=gene4665;Name=SFV_RS23435;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23435;old_locus_tag=SFV_4255 NC_008258.1 Protein Homology CDS 4395845 4396231 . - 0 ID=cds4554;Parent=gene4665;Dbxref=Genbank:WP_001232240.1;Name=WP_001232240.1;Note=electron transport protein;gbkey=CDS;product=soluble cytochrome b562;protein_id=WP_001232240.1;transl_table=11 NC_008258.1 RefSeq gene 4396414 4397766 . - . ID=gene4666;Name=pmbA;gbkey=Gene;gene=pmbA;gene_biotype=protein_coding;gene_synonym=tldE;locus_tag=SFV_RS23440;old_locus_tag=SFV_4256 NC_008258.1 Protein Homology CDS 4396414 4397766 . - 0 ID=cds4555;Parent=gene4666;Dbxref=Genbank:WP_001162181.1;Name=WP_001162181.1;Note=protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD;gbkey=CDS;gene=pmbA;product=peptidase PMbA;protein_id=WP_001162181.1;transl_table=11 NC_008258.1 RefSeq gene 4397860 4398411 . + . ID=gene4667;Name=SFV_RS23445;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23445;old_locus_tag=SFV_4257 NC_008258.1 Protein Homology CDS 4397860 4398411 . + 0 ID=cds4556;Parent=gene4667;Dbxref=Genbank:WP_000166281.1;Name=WP_000166281.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000166281.1;transl_table=11 NC_008258.1 RefSeq gene 4398494 4399867 . - . ID=gene4668;Name=SFV_RS23450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23450;old_locus_tag=SFV_4258 NC_008258.1 Protein Homology CDS 4398494 4399867 . - 0 ID=cds4557;Parent=gene4668;Dbxref=Genbank:WP_001219814.1;Name=WP_001219814.1;Note=ligates L-alanyl-gamma-D-glutamyl-meso-diaminopimelate to UDP-N-acetylmuramic acid for reincorporation into peptidoglycan;gbkey=CDS;product=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase;protein_id=WP_001219814.1;transl_table=11 NC_008258.1 RefSeq gene 4400043 4401041 . + . ID=gene4669;Name=SFV_RS23455;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23455;old_locus_tag=SFV_4259 NC_008258.1 Protein Homology CDS 4400043 4401041 . + 0 ID=cds4558;Parent=gene4669;Dbxref=Genbank:WP_000853753.1;Name=WP_000853753.1;Note=catalyzes the formation of D-fructose 6-phosphate from fructose-1%2C6-bisphosphate;gbkey=CDS;product=fructose 1%2C6-bisphosphatase;protein_id=WP_000853753.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4401061 4402495 . + . ID=id689;gbkey=repeat_region NC_008258.1 RefSeq region 4401065 4402492 . - . ID=id690;gbkey=mobile_element NC_008258.1 RefSeq gene 4401079 4402407 . - . ID=gene4670;Name=SFV_RS23460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23460;old_locus_tag=SFV_4260 NC_008258.1 Protein Homology CDS 4401079 4402407 . - 0 ID=cds4559;Parent=gene4670;Dbxref=Genbank:WP_000547290.1;Name=WP_000547290.1;gbkey=CDS;product=transposase;protein_id=WP_000547290.1;transl_table=11 NC_008258.1 RefSeq gene 4402635 4403507 . - . ID=gene4671;Name=SFV_RS23465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23465;old_locus_tag=SFV_4261 NC_008258.1 Protein Homology CDS 4402635 4403507 . - 0 ID=cds4560;Parent=gene4671;Dbxref=Genbank:WP_000596029.1;Name=WP_000596029.1;Note=membrane component of a putative sugar ABC transporter system;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_000596029.1;transl_table=11 NC_008258.1 RefSeq gene 4403494 4404516 . - . ID=gene4672;Name=SFV_RS23470;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23470;old_locus_tag=SFV_4262 NC_008258.1 Protein Homology CDS 4403494 4404516 . - 0 ID=cds4561;Parent=gene4672;Dbxref=Genbank:WP_005059788.1;Name=WP_005059788.1;gbkey=CDS;product=sugar ABC transporter permease;protein_id=WP_005059788.1;transl_table=11 NC_008258.1 RefSeq gene 4404530 4406032 . - . ID=gene4673;Name=SFV_RS23475;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23475;old_locus_tag=SFV_4263 NC_008258.1 Protein Homology CDS 4404530 4406032 . - 0 ID=cds4562;Parent=gene4673;Dbxref=Genbank:WP_000205830.1;Name=WP_000205830.1;gbkey=CDS;product=sugar ABC transporter ATP-binding protein;protein_id=WP_000205830.1;transl_table=11 NC_008258.1 RefSeq gene 4406172 4407128 . - . ID=gene4674;Name=SFV_RS23480;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23480;pseudo=true NC_008258.1 Protein Homology CDS 4406172 4407128 . - 0 ID=cds4563;Parent=gene4674;gbkey=CDS;product=sugar ABC transporter substrate-binding protein;pseudo=true;transl_except=(pos:complement(4406895..4406897)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4407438 4407968 . + . ID=gene4675;Name=SFV_RS23485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23485;old_locus_tag=SFV_4265 NC_008258.1 Protein Homology CDS 4407438 4407968 . + 0 ID=cds4564;Parent=gene4675;Dbxref=Genbank:WP_000055068.1;Name=WP_000055068.1;Note=catalyzes the hydrolysis of pyrophosphate to phosphate;gbkey=CDS;product=inorganic pyrophosphatase;protein_id=WP_000055068.1;transl_table=11 NC_008258.1 RefSeq gene 4408347 4408688 . - . ID=gene4676;Name=SFV_RS23490;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23490;old_locus_tag=SFV_4266 NC_008258.1 Protein Homology CDS 4408347 4408688 . - 0 ID=cds4565;Parent=gene4676;Dbxref=Genbank:WP_001219160.1;Name=WP_001219160.1;gbkey=CDS;product=gamma-glutamylcyclotransferase YtfP;protein_id=WP_001219160.1;transl_table=11 NC_008258.1 RefSeq gene 4408691 4412470 . - . ID=gene4677;Name=SFV_RS23495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23495;old_locus_tag=SFV_4267 NC_008258.1 Protein Homology CDS 4408691 4412470 . - 0 ID=cds4566;Parent=gene4677;Dbxref=Genbank:WP_000060854.1;Name=WP_000060854.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000060854.1;transl_table=11 NC_008258.1 RefSeq gene 4412467 4414200 . - . ID=gene4678;Name=SFV_RS23500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23500;old_locus_tag=SFV_4268 NC_008258.1 Protein Homology CDS 4412467 4414200 . - 0 ID=cds4567;Parent=gene4678;Dbxref=Genbank:WP_001269324.1;Name=WP_001269324.1;gbkey=CDS;product=membrane protein;protein_id=WP_001269324.1;transl_table=11 NC_008258.1 RefSeq gene 4414170 4414298 . - . ID=gene4679;Name=SFV_RS23505;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23505 NC_008258.1 Protein Homology CDS 4414170 4414298 . - 0 ID=cds4568;Parent=gene4679;Dbxref=Genbank:WP_001296688.1;Name=WP_001296688.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001296688.1;transl_table=11 NC_008258.1 RefSeq gene 4414406 4415044 . + . ID=gene4680;Name=SFV_RS23510;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23510;old_locus_tag=SFV_4269 NC_008258.1 Protein Homology CDS 4414406 4415044 . + 0 ID=cds4569;Parent=gene4680;Dbxref=Genbank:WP_001295196.1;Name=WP_001295196.1;Note=this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form%3B provides protection against oxidative stress;gbkey=CDS;product=peptide methionine sulfoxide reductase MsrA;protein_id=WP_001295196.1;transl_table=11 NC_008258.1 RefSeq gene 4415367 4416710 . + . ID=gene4681;Name=SFV_RS23515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23515;old_locus_tag=SFV_4270 NC_008258.1 Protein Homology CDS 4415367 4416710 . + 0 ID=cds4570;Parent=gene4681;Dbxref=Genbank:WP_000935042.1;Name=WP_000935042.1;gbkey=CDS;product=transporter;protein_id=WP_000935042.1;transl_table=11 NC_008258.1 RefSeq gene 4416772 4416978 . - . ID=gene4682;Name=SFV_RS23520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23520 NC_008258.1 Protein Homology CDS 4416772 4416978 . - 0 ID=cds4571;Parent=gene4682;Dbxref=Genbank:WP_005053984.1;Name=WP_005053984.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005053984.1;transl_table=11 NC_008258.1 RefSeq gene 4417303 4417857 . + . ID=gene4683;Name=SFV_RS23525;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23525;old_locus_tag=SFV_4271 NC_008258.1 Protein Homology CDS 4417303 4417857 . + 0 ID=cds4572;Parent=gene4683;Dbxref=Genbank:WP_000175268.1;Name=WP_000175268.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000175268.1;transl_table=11 NC_008258.1 RefSeq gene 4417920 4418858 . - . ID=gene4684;Name=SFV_RS23530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23530;old_locus_tag=SFV_4272 NC_008258.1 Protein Homology CDS 4417920 4418858 . - 0 ID=cds4573;Parent=gene4684;Dbxref=Genbank:WP_000937636.1;Name=WP_000937636.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000937636.1;transl_table=11 NC_008258.1 RefSeq gene 4419070 4419810 . - . ID=gene4685;Name=SFV_RS23535;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23535;old_locus_tag=SFV_4273 NC_008258.1 Protein Homology CDS 4419070 4419810 . - 0 ID=cds4574;Parent=gene4685;Dbxref=Genbank:WP_000886893.1;Name=WP_000886893.1;Note=catalyzes the formation of AMP from adenosine-3'%2C5'-bisphosphate;gbkey=CDS;product=adenosine-3'(2')%2C5'-bisphosphate nucleotidase;protein_id=WP_000886893.1;transl_table=11 NC_008258.1 RefSeq gene 4420000 4421943 . + . ID=gene4686;Name=cpdB;gbkey=Gene;gene=cpdB;gene_biotype=protein_coding;locus_tag=SFV_RS23540;old_locus_tag=SFV_4274 NC_008258.1 Protein Homology CDS 4420000 4421943 . + 0 ID=cds4575;Parent=gene4686;Dbxref=Genbank:WP_000589471.1;Name=WP_000589471.1;Note=periplasmic enzyme%3B functions during ribonucleic acid degradation%3B 2'%2C3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate;gbkey=CDS;gene=cpdB;product=3'-nucleotidase;protein_id=WP_000589471.1;transl_table=11 NC_008258.1 RefSeq gene 4422069 4422539 . - . ID=gene4687;Name=SFV_RS23545;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23545;old_locus_tag=SFV_4276 NC_008258.1 Protein Homology CDS 4422069 4422539 . - 0 ID=cds4576;Parent=gene4687;Dbxref=Genbank:WP_001307543.1;Name=WP_001307543.1;gbkey=CDS;product=HxlR family transcriptional regulator;protein_id=WP_001307543.1;transl_table=11 NC_008258.1 RefSeq gene 4422538 4423398 . + . ID=gene4688;Name=SFV_RS23550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23550;old_locus_tag=SFV_4275 NC_008258.1 Protein Homology CDS 4422538 4423398 . + 0 ID=cds4577;Parent=gene4688;Dbxref=Genbank:WP_000560548.1;Name=WP_000560548.1;gbkey=CDS;product=oxidoreductase;protein_id=WP_000560548.1;transl_table=11 NC_008258.1 RefSeq gene 4423507 4424472 . + . ID=gene4689;Name=SFV_RS23555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23555;old_locus_tag=SFV_4277 NC_008258.1 Protein Homology CDS 4423507 4424472 . + 0 ID=cds4578;Parent=gene4689;Dbxref=Genbank:WP_001296686.1;Name=WP_001296686.1;gbkey=CDS;product=membrane protein;protein_id=WP_001296686.1;transl_table=11 NC_008258.1 RefSeq gene 4424580 4425242 . + . ID=gene4690;Name=SFV_RS23560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23560;old_locus_tag=SFV_4278 NC_008258.1 Protein Homology CDS 4424580 4425242 . + 0 ID=cds4579;Parent=gene4690;Dbxref=Genbank:WP_000331456.1;Name=WP_000331456.1;Note=Involved in anaerobic NO protection and iron metabolism;gbkey=CDS;product=iron-sulfur cluster repair protein YtfE;protein_id=WP_000331456.1;transl_table=11 NC_008258.1 RefSeq gene 4425287 4426699 . - . ID=gene4691;Name=SFV_RS23565;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23565;old_locus_tag=SFV_4279 NC_008258.1 Protein Homology CDS 4425287 4426699 . - 0 ID=cds4580;Parent=gene4691;Dbxref=Genbank:WP_000228370.1;Name=WP_000228370.1;gbkey=CDS;product=alanine glycine permease;protein_id=WP_000228370.1;transl_table=11 NC_008258.1 RefSeq gene 4427008 4427628 . - . ID=gene4692;Name=SFV_RS23570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23570;old_locus_tag=SFV_4280 NC_008258.1 Protein Homology CDS 4427008 4427628 . - 0 ID=cds4581;Parent=gene4692;Dbxref=Genbank:WP_000211225.1;Name=WP_000211225.1;Note=FKBP-type%3B rotamase%3B catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides;gbkey=CDS;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=WP_000211225.1;transl_table=11 NC_008258.1 RefSeq gene 4427847 4428392 . + . ID=gene4693;Name=SFV_RS23575;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23575;old_locus_tag=SFV_4281 NC_008258.1 Protein Homology CDS 4427847 4428392 . + 0 ID=cds4582;Parent=gene4693;Dbxref=Genbank:WP_001119485.1;Name=WP_001119485.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001119485.1;transl_table=11 NC_008258.1 RefSeq gene 4428376 4429023 . - . ID=gene4694;Name=SFV_RS23580;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23580;old_locus_tag=SFV_4282 NC_008258.1 Protein Homology CDS 4428376 4429023 . - 0 ID=cds4583;Parent=gene4694;Dbxref=Genbank:WP_005053964.1;Name=WP_005053964.1;gbkey=CDS;product=TetR family transcriptional regulator;protein_id=WP_005053964.1;transl_table=11 NC_008258.1 RefSeq gene 4429235 4430026 . + . ID=gene4695;Name=SFV_RS23585;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23585;old_locus_tag=SFV_4283 NC_008258.1 Protein Homology CDS 4429235 4430026 . + 0 ID=cds4584;Parent=gene4695;Dbxref=Genbank:WP_005106286.1;Name=WP_005106286.1;Note=catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis;gbkey=CDS;product=3-ketoacyl-ACP reductase;protein_id=WP_005106286.1;transl_table=11 NC_008258.1 RefSeq gene 4430036 4430920 . + . ID=gene4696;Name=SFV_RS23590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23590;old_locus_tag=SFV_4284 NC_008258.1 Protein Homology CDS 4430036 4430920 . + 0 ID=cds4585;Parent=gene4696;Dbxref=Genbank:WP_001205244.1;Name=WP_001205244.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001205244.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4430836 4432473 . + . ID=id691;gbkey=repeat_region NC_008258.1 RefSeq region 4430840 4431607 . - . ID=id692;gbkey=mobile_element NC_008258.1 RefSeq gene 4431277 4431501 . - . ID=gene4697;Name=SFV_RS23595;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23595 NC_008258.1 Protein Homology CDS 4431277 4431501 . - 0 ID=cds4586;Parent=gene4697;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq region 4431608 4432471 . + . ID=id693;Note=partial;gbkey=mobile_element NC_008258.1 RefSeq gene 4431610 4431795 . + . ID=gene4698;Name=SFV_RS23600;end_range=4431795,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23600;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 4431610 4431795 . + 0 ID=cds4587;Parent=gene4698;end_range=4431795,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4431715 4432428 . + . ID=gene4699;Name=SFV_RS23605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23605 NC_008258.1 Protein Homology CDS 4431715 4432428 . + 0 ID=cds4588;Parent=gene4699;Dbxref=Genbank:WP_024260140.1;Name=WP_024260140.1;gbkey=CDS;product=transposase;protein_id=WP_024260140.1;transl_table=11 NC_008258.1 RefSeq gene 4432472 4433521 . - . ID=gene4700;Name=cadB;gbkey=Gene;gene=cadB;gene_biotype=pseudogene;locus_tag=SFV_RS23610;old_locus_tag=SFV_4287;partial=true;pseudo=true;start_range=.,4432472 NC_008258.1 Protein Homology CDS 4432472 4433521 . - 0 ID=cds4589;Parent=gene4700;Note=antiporter protein responsible for lysine import and cadaverine export%3B member of the lysine-dependent acid resistance system 4 (AR4)%3B inner membrane protein;exception=unextendable partial coding region;gbkey=CDS;gene=cadB;partial=true;product=lysine:cadaverine antiporter;pseudo=true;start_range=.,4432472;transl_table=11 NC_008258.1 RefSeq repeat_region 4433634 4434415 . + . ID=id694;gbkey=repeat_region NC_008258.1 RefSeq region 4433641 4434408 . + . ID=id695;gbkey=mobile_element NC_008258.1 RefSeq gene 4433747 4433971 . + . ID=gene4701;Name=SFV_RS23615;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23615 NC_008258.1 Protein Homology CDS 4433747 4433971 . + 0 ID=cds4590;Parent=gene4701;Dbxref=Genbank:WP_001243773.1;Name=WP_001243773.1;gbkey=CDS;product=transposase;protein_id=WP_001243773.1;transl_table=11 NC_008258.1 RefSeq gene 4433998 4434393 . + . ID=gene4702;Name=SFV_RS23620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23620 NC_008258.1 Protein Homology CDS 4433998 4434393 . + 0 ID=cds4591;Parent=gene4702;Dbxref=Genbank:WP_011069613.1;Name=WP_011069613.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_011069613.1;transl_table=11 NC_008258.1 RefSeq gene 4434426 4434644 . + . ID=gene4703;Name=SFV_RS23625;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23625 NC_008258.1 Protein Homology CDS 4434426 4434644 . + 0 ID=cds4592;Parent=gene4703;Dbxref=Genbank:WP_000044756.1;Name=WP_000044756.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000044756.1;transl_table=11 NC_008258.1 RefSeq gene 4434756 4434831 . - . ID=gene4704;Name=SFV_RS23630;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS23630;old_locus_tag=SFV_4290 NC_008258.1 tRNAscan-SE tRNA 4434756 4434831 . - . ID=rna111;Parent=gene4704;anticodon=(pos:complement(4434796..4434798));gbkey=tRNA;product=tRNA-Phe NC_008258.1 tRNAscan-SE exon 4434756 4434831 . - . ID=id696;Parent=rna111;anticodon=(pos:complement(4434796..4434798));gbkey=tRNA;product=tRNA-Phe NC_008258.1 RefSeq gene 4434938 4435513 . - . ID=gene4705;Name=SFV_RS23635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23635;old_locus_tag=SFV_4291 NC_008258.1 Protein Homology CDS 4434938 4435513 . - 0 ID=cds4593;Parent=gene4705;Dbxref=Genbank:WP_001188520.1;Name=WP_001188520.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001188520.1;transl_table=11 NC_008258.1 RefSeq gene 4435550 4437247 . - . ID=gene4706;Name=dipZ;gbkey=Gene;gene=dipZ;gene_biotype=protein_coding;locus_tag=SFV_RS23640;old_locus_tag=SFV_4292 NC_008258.1 Protein Homology CDS 4435550 4437247 . - 0 ID=cds4594;Parent=gene4706;Dbxref=Genbank:WP_000068936.1;Name=WP_000068936.1;Note=two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm%3B DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm;gbkey=CDS;gene=dipZ;product=thiol:disulfide interchange protein DsbD;protein_id=WP_000068936.1;transl_table=11 NC_008258.1 RefSeq gene 4437223 4437561 . - . ID=gene4707;Name=SFV_RS23645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23645;old_locus_tag=SFV_4293 NC_008258.1 Protein Homology CDS 4437223 4437561 . - 0 ID=cds4595;Parent=gene4707;Dbxref=Genbank:WP_000883400.1;Name=WP_000883400.1;Note=copper binding protein required for copper tolerance%3B involved in resistance toward heavy metals;gbkey=CDS;product=divalent-cation tolerance protein CutA;protein_id=WP_000883400.1;transl_table=11 NC_008258.1 RefSeq gene 4437677 4438978 . - . ID=gene4708;Name=SFV_RS23650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23650;old_locus_tag=SFV_4294 NC_008258.1 Protein Homology CDS 4437677 4438978 . - 0 ID=cds4596;Parent=gene4708;Dbxref=Genbank:WP_000961959.1;Name=WP_000961959.1;Note=functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate%3B similar to dcuB;gbkey=CDS;product=anaerobic C4-dicarboxylate transporter DcuA;protein_id=WP_000961959.1;transl_table=11 NC_008258.1 RefSeq gene 4439096 4440532 . - . ID=gene4709;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=SFV_RS23655;old_locus_tag=SFV_4295 NC_008258.1 Protein Homology CDS 4439096 4440532 . - 0 ID=cds4597;Parent=gene4709;Dbxref=Genbank:WP_000069437.1;Name=WP_000069437.1;Note=catalyzes the formation of fumarate from aspartate;gbkey=CDS;gene=aspA;product=aspartate ammonia-lyase;protein_id=WP_000069437.1;transl_table=11 NC_008258.1 RefSeq gene 4440869 4441345 . + . ID=gene4710;Name=fxsA;gbkey=Gene;gene=fxsA;gene_biotype=protein_coding;locus_tag=SFV_RS23660;old_locus_tag=SFV_4296 NC_008258.1 Protein Homology CDS 4440869 4441345 . + 0 ID=cds4598;Parent=gene4710;Dbxref=Genbank:WP_001267445.1;Name=WP_001267445.1;Note=F exclusion of bacteriophage T7%3B overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7%3B interacts with the F plasmid-encoded PifA protein%3B inner membrane protein;gbkey=CDS;gene=fxsA;product=exclusion suppressor FxsA;protein_id=WP_001267445.1;transl_table=11 NC_008258.1 RefSeq gene 4441361 4442617 . - . ID=gene4711;Name=SFV_RS23665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23665;old_locus_tag=SFV_4297 NC_008258.1 Protein Homology CDS 4441361 4442617 . - 0 ID=cds4599;Parent=gene4711;Dbxref=Genbank:WP_000015826.1;Name=WP_000015826.1;Note=uncharacterized member of the APC superfamily of amino acid transporters%3B unknown function;gbkey=CDS;product=transporter;protein_id=WP_000015826.1;transl_table=11 NC_008258.1 RefSeq gene 4442893 4443186 . + . ID=gene4712;Name=groES;gbkey=Gene;gene=groES;gene_biotype=protein_coding;locus_tag=SFV_RS23670;old_locus_tag=SFV_4298 NC_008258.1 Protein Homology CDS 4442893 4443186 . + 0 ID=cds4600;Parent=gene4712;Dbxref=Genbank:WP_001026276.1;Name=WP_001026276.1;Note=10 kDa chaperonin%3B Cpn10%3B GroES%3B forms homoheptameric ring%3B binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it%3B folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES%3B release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring;gbkey=CDS;gene=groES;product=molecular chaperone GroES;protein_id=WP_001026276.1;transl_table=11 NC_008258.1 RefSeq gene 4443230 4444876 . + . ID=gene4713;Name=groEL;gbkey=Gene;gene=groEL;gene_biotype=protein_coding;locus_tag=SFV_RS23675;old_locus_tag=SFV_4299 NC_008258.1 Protein Homology CDS 4443230 4444876 . + 0 ID=cds4601;Parent=gene4713;Dbxref=Genbank:WP_000729117.1;Name=WP_000729117.1;Note=60 kDa chaperone family%3B promotes refolding of misfolded polypeptides especially under stressful conditions%3B forms two stacked rings of heptamers to form a barrel-shaped 14mer%3B ends can be capped by GroES%3B misfolded proteins enter the barrel where they are refolded when GroES binds%3B many bacteria have multiple copies of the groEL gene which are active under different environmental conditions%3B the B.japonicum protein in this cluster is expressed constitutively%3B in Rhodobacter%2C Corynebacterium and Rhizobium this protein is essential for growth;gbkey=CDS;gene=groEL;product=chaperonin GroEL;protein_id=WP_000729117.1;transl_table=11 NC_008258.1 RefSeq gene 4445014 4445367 . + . ID=gene4714;Name=SFV_RS23680;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23680;old_locus_tag=SFV_4300 NC_008258.1 Protein Homology CDS 4445014 4445367 . + 0 ID=cds4602;Parent=gene4714;Dbxref=Genbank:WP_000558209.1;Name=WP_000558209.1;gbkey=CDS;product=DUF4156 domain-containing protein;protein_id=WP_000558209.1;transl_table=11 NC_008258.1 RefSeq gene 4445570 4446439 . - . ID=gene4715;Name=SFV_RS23685;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23685;old_locus_tag=SFV_4301 NC_008258.1 Protein Homology CDS 4445570 4446439 . - 0 ID=cds4603;Parent=gene4715;Dbxref=Genbank:WP_001008046.1;Name=WP_001008046.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001008046.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4446568 4447342 . + . ID=id697;gbkey=repeat_region NC_008258.1 RefSeq region 4446570 4447337 . + . ID=id698;gbkey=mobile_element NC_008258.1 RefSeq gene 4446676 4446900 . + . ID=gene4716;Name=SFV_RS23690;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23690 NC_008258.1 Protein Homology CDS 4446676 4446900 . + 0 ID=cds4604;Parent=gene4716;Dbxref=Genbank:WP_001243684.1;Name=WP_001243684.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001243684.1;transl_table=11 NC_008258.1 RefSeq gene 4446927 4447322 . + . ID=gene4717;Name=SFV_RS23695;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23695 NC_008258.1 Protein Homology CDS 4446927 4447322 . + 0 ID=cds4605;Parent=gene4717;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 4447610 4448638 . - . ID=gene4718;Name=SFV_RS23700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23700;old_locus_tag=SFV_4304 NC_008258.1 Protein Homology CDS 4447610 4448638 . - 0 ID=cds4606;Parent=gene4718;Dbxref=Genbank:WP_000940533.1;Name=WP_000940533.1;gbkey=CDS;product=EF-P beta-lysylation protein EpmB;protein_id=WP_000940533.1;transl_table=11 NC_008258.1 RefSeq gene 4448680 4449246 . + . ID=gene4719;Name=SFV_RS23705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23705;old_locus_tag=SFV_4305 NC_008258.1 Protein Homology CDS 4448680 4449246 . + 0 ID=cds4607;Parent=gene4719;Dbxref=Genbank:WP_000257278.1;Name=WP_000257278.1;gbkey=CDS;product=elongation factor P;protein_id=WP_000257278.1;transl_table=11 NC_008258.1 RefSeq gene 4449298 4449423 . + . ID=gene4720;Name=SFV_RS23710;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23710 NC_008258.1 Protein Homology CDS 4449298 4449423 . + 0 ID=cds4608;Parent=gene4720;Dbxref=Genbank:WP_000977756.1;Name=WP_000977756.1;Note=acts as and antidote to the bacteriolytic entericidin B in the EcnAB toxin-antitoxin complex;gbkey=CDS;product=entericidin A;protein_id=WP_000977756.1;transl_table=11 NC_008258.1 RefSeq gene 4449534 4449680 . + . ID=gene4721;Name=SFV_RS23715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23715;old_locus_tag=SFV_4306 NC_008258.1 Protein Homology CDS 4449534 4449680 . + 0 ID=cds4609;Parent=gene4721;Dbxref=Genbank:WP_000239596.1;Name=WP_000239596.1;gbkey=CDS;product=entericidin B;protein_id=WP_000239596.1;transl_table=11 NC_008258.1 RefSeq gene 4449856 4450173 . + . ID=gene4722;Name=SFV_RS23720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23720 NC_008258.1 Protein Homology CDS 4449856 4450173 . + 0 ID=cds4610;Parent=gene4722;Dbxref=Genbank:WP_000118482.1;Name=WP_000118482.1;Note=member of the SMR family of proton-dependent drug efflux transporters%3B quaternary ammonium compound efflux pump%3B confers resistance to cetylpyridinium%2C cetyldimethylethyl ammonium and cetrimide cations;gbkey=CDS;product=quaternary ammonium compound-resistance protein SugE;protein_id=WP_000118482.1;transl_table=11 NC_008258.1 RefSeq gene 4450170 4450703 . - . ID=gene4723;Name=SFV_RS23725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23725;old_locus_tag=SFV_4308 NC_008258.1 Protein Homology CDS 4450170 4450703 . - 0 ID=cds4611;Parent=gene4723;Dbxref=Genbank:WP_001238362.1;Name=WP_001238362.1;Note=lipocalin%3B globomycin-sensitive outer membrane lipoprotein;gbkey=CDS;product=hypothetical protein;protein_id=WP_001238362.1;transl_table=11 NC_008258.1 RefSeq gene 4450792 4451925 . - . ID=gene4724;Name=SFV_RS23730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23730;old_locus_tag=SFV_4309 NC_008258.1 Protein Homology CDS 4450792 4451925 . - 0 ID=cds4612;Parent=gene4724;Dbxref=Genbank:WP_024260326.1;Name=WP_024260326.1;gbkey=CDS;product=BlaEC family class C beta-lactamase;protein_id=WP_024260326.1;transl_table=11 NC_008258.1 RefSeq gene 4451988 4452347 . - . ID=gene4725;Name=SFV_RS23735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23735;old_locus_tag=SFV_4310 NC_008258.1 Protein Homology CDS 4451988 4452347 . - 0 ID=cds4613;Parent=gene4725;Dbxref=Genbank:WP_000609663.1;Name=WP_000609663.1;Note=in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane;gbkey=CDS;product=fumarate reductase subunit D;protein_id=WP_000609663.1;transl_table=11 NC_008258.1 RefSeq gene 4452358 4452753 . - . ID=gene4726;Name=SFV_RS23740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23740;old_locus_tag=SFV_4311 NC_008258.1 Protein Homology CDS 4452358 4452753 . - 0 ID=cds4614;Parent=gene4726;Dbxref=Genbank:WP_000208757.1;Name=WP_000208757.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase subunit C;protein_id=WP_000208757.1;transl_table=11 NC_008258.1 RefSeq gene 4452764 4453498 . - . ID=gene4727;Name=SFV_RS23745;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23745;old_locus_tag=SFV_4312 NC_008258.1 Protein Homology CDS 4452764 4453498 . - 0 ID=cds4615;Parent=gene4727;Dbxref=Genbank:WP_000829498.1;Name=WP_000829498.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase iron-sulfur subunit;protein_id=WP_000829498.1;transl_table=11 NC_008258.1 RefSeq gene 4453491 4455299 . - . ID=gene4728;Name=SFV_RS23750;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23750;old_locus_tag=SFV_4313 NC_008258.1 Protein Homology CDS 4453491 4455299 . - 0 ID=cds4616;Parent=gene4728;Dbxref=Genbank:WP_001192978.1;Name=WP_001192978.1;Note=part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration%3B FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit%2C respectively%3B FrdCD are the membrane components which interact with quinone and are involved in electron transfer%3B the catalytic subunits are similar to succinate dehydrogenase SdhAB;gbkey=CDS;product=fumarate reductase flavoprotein subunit;protein_id=WP_001192978.1;transl_table=11 NC_008258.1 RefSeq gene 4455624 4456601 . + . ID=gene4729;Name=SFV_RS23755;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23755;old_locus_tag=SFV_4314 NC_008258.1 Protein Homology CDS 4455624 4456601 . + 0 ID=cds4617;Parent=gene4729;Dbxref=Genbank:WP_000004771.1;Name=WP_000004771.1;Note=poxA%3B regulates pyruvate oxidase poxB;gbkey=CDS;product=elongation factor P--(R)-beta-lysine ligase;protein_id=WP_000004771.1;transl_table=11 NC_008258.1 RefSeq gene 4456820 4458312 . + . ID=gene4730;Name=SFV_RS23760;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23760;pseudo=true NC_008258.1 Protein Homology CDS 4456820 4458312 . + 0 ID=cds4618;Parent=gene4730;exception=annotated by transcript or proteomic data;gbkey=CDS;product=transporter;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4458463 4461774 . - . ID=gene4731;Name=SFV_RS23765;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23765;old_locus_tag=SFV_4316 NC_008258.1 Protein Homology CDS 4458463 4461774 . - 0 ID=cds4619;Parent=gene4731;Dbxref=Genbank:WP_001236843.1;Name=WP_001236843.1;gbkey=CDS;product=mechanosensitive channel protein;protein_id=WP_001236843.1;transl_table=11 NC_008258.1 RefSeq gene 4461796 4462764 . - . ID=gene4732;Name=psd;gbkey=Gene;gene=psd;gene_biotype=protein_coding;locus_tag=SFV_RS23770;old_locus_tag=SFV_4317 NC_008258.1 Protein Homology CDS 4461796 4462764 . - 0 ID=cds4620;Parent=gene4732;Dbxref=Genbank:WP_000934920.1;Name=WP_000934920.1;Note=catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine;gbkey=CDS;gene=psd;product=phosphatidylserine decarboxylase proenzyme;protein_id=WP_000934920.1;transl_table=11 NC_008258.1 RefSeq gene 4462861 4463913 . - . ID=gene4733;Name=SFV_RS23775;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23775;old_locus_tag=SFV_4318 NC_008258.1 Protein Homology CDS 4462861 4463913 . - 0 ID=cds4621;Parent=gene4733;Dbxref=Genbank:WP_000041970.1;Name=WP_000041970.1;Note=EngC%3B RsgA%3B CpgA%3B circularly permuted GTPase%3B ribosome small subunit-dependent GTPase A%3B has the pattern G4-G1-G3 as opposed to other GTPases%3B interacts strongly with 30S ribosome which stimulates GTPase activity;gbkey=CDS;product=GTPase RsgA;protein_id=WP_000041970.1;transl_table=11 NC_008258.1 RefSeq gene 4464008 4464553 . + . ID=gene4734;Name=SFV_RS23780;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23780;old_locus_tag=SFV_4319 NC_008258.1 Protein Homology CDS 4464008 4464553 . + 0 ID=cds4622;Parent=gene4734;Dbxref=Genbank:WP_005053889.1;Name=WP_005053889.1;Note=3'-5' exoribonuclease specific for small oligoribonuclotides;gbkey=CDS;product=oligoribonuclease;protein_id=WP_005053889.1;transl_table=11 NC_008258.1 RefSeq gene 4464764 4464839 . + . ID=gene4735;Name=SFV_RS23785;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS23785;old_locus_tag=SFV_4320 NC_008258.1 tRNAscan-SE tRNA 4464764 4464839 . + . ID=rna112;Parent=gene4735;anticodon=(pos:4464797..4464799);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 4464764 4464839 . + . ID=id699;Parent=rna112;anticodon=(pos:4464797..4464799);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq repeat_region 4464995 4465296 . + . ID=id700;gbkey=repeat_region NC_008258.1 RefSeq gene 4464997 4465072 . + . ID=gene4736;Name=SFV_RS23790;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS23790;old_locus_tag=SFV_4321 NC_008258.1 tRNAscan-SE tRNA 4464997 4465072 . + . ID=rna113;Parent=gene4736;anticodon=(pos:4465030..4465032);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 4464997 4465072 . + . ID=id701;Parent=rna113;anticodon=(pos:4465030..4465032);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 4465108 4465183 . + . ID=gene4737;Name=SFV_RS23795;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS23795;old_locus_tag=SFV_4322 NC_008258.1 tRNAscan-SE tRNA 4465108 4465183 . + . ID=rna114;Parent=gene4737;anticodon=(pos:4465141..4465143);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 4465108 4465183 . + . ID=id702;Parent=rna114;anticodon=(pos:4465141..4465143);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 4465219 4465294 . + . ID=gene4738;Name=SFV_RS23800;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS23800;old_locus_tag=SFV_4323 NC_008258.1 tRNAscan-SE tRNA 4465219 4465294 . + . ID=rna115;Parent=gene4738;anticodon=(pos:4465252..4465254);gbkey=tRNA;product=tRNA-Gly NC_008258.1 tRNAscan-SE exon 4465219 4465294 . + . ID=id703;Parent=rna115;anticodon=(pos:4465252..4465254);gbkey=tRNA;product=tRNA-Gly NC_008258.1 RefSeq gene 4465564 4466703 . - . ID=gene4739;Name=SFV_RS23805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23805;old_locus_tag=SFV_4325 NC_008258.1 Protein Homology CDS 4465564 4466703 . - 0 ID=cds4623;Parent=gene4739;Dbxref=Genbank:WP_001294228.1;Name=WP_001294228.1;gbkey=CDS;product=epoxyqueuosine reductase;protein_id=WP_001294228.1;transl_table=11 NC_008258.1 RefSeq gene 4466717 4468249 . + . ID=gene4740;Name=SFV_RS23810;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23810;old_locus_tag=SFV_4324 NC_008258.1 Protein Homology CDS 4466717 4468249 . + 0 ID=cds4624;Parent=gene4740;Dbxref=Genbank:WP_024260327.1;Name=WP_024260327.1;gbkey=CDS;product=carbohydrate kinase;protein_id=WP_024260327.1;transl_table=11 NC_008258.1 RefSeq gene 4468221 4468682 . + . ID=gene4741;Name=SFV_RS23815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23815;old_locus_tag=SFV_4326 NC_008258.1 Protein Homology CDS 4468221 4468682 . + 0 ID=cds4625;Parent=gene4741;Dbxref=Genbank:WP_000981977.1;Name=WP_000981977.1;Note=needed for nucleoid integrity%3B possibly involved in cell wall synthesis;gbkey=CDS;product=tRNA threonylcarbamoyladenosine biosynthesis protein TsaE;protein_id=WP_000981977.1;transl_table=11 NC_008258.1 RefSeq gene 4468701 4470038 . + . ID=gene4742;Name=SFV_RS23820;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23820;old_locus_tag=SFV_4327 NC_008258.1 Protein Homology CDS 4468701 4470038 . + 0 ID=cds4626;Parent=gene4742;Dbxref=Genbank:WP_000990325.1;Name=WP_000990325.1;gbkey=CDS;product=N-acetylmuramoyl-L-alanine amidase;protein_id=WP_000990325.1;transl_table=11 NC_008258.1 RefSeq gene 4470048 4471931 . + . ID=gene4743;Name=SFV_RS23825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23825;old_locus_tag=SFV_4328 NC_008258.1 Protein Homology CDS 4470048 4471931 . + 0 ID=cds4627;Parent=gene4743;Dbxref=Genbank:WP_001122489.1;Name=WP_001122489.1;gbkey=CDS;product=DNA mismatch repair protein MutL;protein_id=WP_001122489.1;transl_table=11 NC_008258.1 RefSeq gene 4471924 4472874 . + . ID=gene4744;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=SFV_RS23830;old_locus_tag=SFV_4329 NC_008258.1 Protein Homology CDS 4471924 4472874 . + 0 ID=cds4628;Parent=gene4744;Dbxref=Genbank:WP_001280345.1;Name=WP_001280345.1;Note=IPP transferase%3B isopentenyltransferase%3B involved in tRNA modification%3B in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil%3B further tRNA modifications may occur%3B mutations in miaA result in defects in translation efficiency and fidelity;gbkey=CDS;gene=miaA;product=tRNA dimethylallyltransferase;protein_id=WP_001280345.1;transl_table=11 NC_008258.1 RefSeq gene 4472960 4473268 . + . ID=gene4745;Name=hfq;gbkey=Gene;gene=hfq;gene_biotype=protein_coding;locus_tag=SFV_RS23835;old_locus_tag=SFV_4330 NC_008258.1 Protein Homology CDS 4472960 4473268 . + 0 ID=cds4629;Parent=gene4745;Dbxref=Genbank:WP_001051883.1;Name=WP_001051883.1;Note=HF-I%2C host factor for RNA phage Q beta replication;gbkey=CDS;gene=hfq;product=RNA chaperone Hfq;protein_id=WP_001051883.1;transl_table=11 NC_008258.1 RefSeq gene 4473344 4474624 . + . ID=gene4746;Name=SFV_RS23840;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23840;old_locus_tag=SFV_4331 NC_008258.1 Protein Homology CDS 4473344 4474624 . + 0 ID=cds4630;Parent=gene4746;Dbxref=Genbank:WP_000460360.1;Name=WP_000460360.1;Note=involved in modulation of proteins HflK and HflC%3B part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein;gbkey=CDS;product=GTPase HflX;protein_id=WP_000460360.1;transl_table=11 NC_008258.1 RefSeq gene 4474710 4475969 . + . ID=gene4747;Name=SFV_RS23845;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23845;old_locus_tag=SFV_4332 NC_008258.1 Protein Homology CDS 4474710 4475969 . + 0 ID=cds4631;Parent=gene4747;Dbxref=Genbank:WP_000312488.1;Name=WP_000312488.1;Note=with HflC inhibits proteolysis of lambda cII protein by FtsH;gbkey=CDS;product=cell division protein FtsH;protein_id=WP_000312488.1;transl_table=11 NC_008258.1 RefSeq gene 4475972 4476976 . + . ID=gene4748;Name=SFV_RS23850;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23850;old_locus_tag=SFV_4333 NC_008258.1 Protein Homology CDS 4475972 4476976 . + 0 ID=cds4632;Parent=gene4748;Dbxref=Genbank:WP_001232412.1;Name=WP_001232412.1;Note=with HflK inhibits proteolysis of lambda cII protein by FtsH;gbkey=CDS;product=modulator of FtsH protease HflC;protein_id=WP_001232412.1;transl_table=11 NC_008258.1 RefSeq gene 4477058 4477255 . + . ID=gene4749;Name=SFV_RS23855;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23855;old_locus_tag=SFV_4334 NC_008258.1 Protein Homology CDS 4477058 4477255 . + 0 ID=cds4633;Parent=gene4749;Dbxref=Genbank:WP_001089295.1;Name=WP_001089295.1;gbkey=CDS;product=membrane protein;protein_id=WP_001089295.1;transl_table=11 NC_008258.1 RefSeq gene 4477359 4478657 . + . ID=gene4750;Name=SFV_RS23860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23860;old_locus_tag=SFV_4335 NC_008258.1 Protein Homology CDS 4477359 4478657 . + 0 ID=cds4634;Parent=gene4750;Dbxref=Genbank:WP_000527949.1;Name=WP_000527949.1;Note=catalyzes the formation of N6-(1%2C2%2C-dicarboxyethyl)-AMP from L-aspartate%2C inosine monophosphate and GTP in AMP biosynthesis;gbkey=CDS;product=adenylosuccinate synthetase;protein_id=WP_000527949.1;transl_table=11 NC_008258.1 RefSeq gene 4478862 4479287 . + . ID=gene4751;Name=SFV_RS23865;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23865;old_locus_tag=SFV_4336 NC_008258.1 Protein Homology CDS 4478862 4479287 . + 0 ID=cds4635;Parent=gene4751;Dbxref=Genbank:WP_001177639.1;Name=WP_001177639.1;Note=negatively regulates the transcription of genes upregulated by nitrosative stress;gbkey=CDS;product=transcriptional regulator;protein_id=WP_001177639.1;transl_table=11 NC_008258.1 RefSeq gene 4479326 4481767 . + . ID=gene4752;Name=SFV_RS23870;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23870;old_locus_tag=SFV_4337 NC_008258.1 Protein Homology CDS 4479326 4481767 . + 0 ID=cds4636;Parent=gene4752;Dbxref=Genbank:WP_000076316.1;Name=WP_000076316.1;Note=3'-5'exoribonuclease that acts nonspecifically on poly(A)%2C poly(U) and ribosomal RNAs;gbkey=CDS;product=exoribonuclease R;protein_id=WP_000076316.1;transl_table=11 NC_008258.1 RefSeq gene 4481947 4482678 . + . ID=gene4753;Name=SFV_RS23875;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23875;old_locus_tag=SFV_4338 NC_008258.1 Protein Homology CDS 4481947 4482678 . + 0 ID=cds4637;Parent=gene4753;Dbxref=Genbank:WP_001293282.1;Name=WP_001293282.1;Note=Specifically methylates the ribose of guanosine 2251 in 23S rRNA;gbkey=CDS;product=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;protein_id=WP_001293282.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4482717 4483494 . + . ID=id704;gbkey=repeat_region NC_008258.1 RefSeq region 4482724 4483491 . + . ID=id705;gbkey=mobile_element NC_008258.1 RefSeq gene 4482827 4483054 . + . ID=gene4754;Name=SFV_RS23880;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23880 NC_008258.1 Protein Homology CDS 4482827 4483054 . + 0 ID=cds4638;Parent=gene4754;Dbxref=Genbank:WP_005114237.1;Name=WP_005114237.1;gbkey=CDS;product=transposase;protein_id=WP_005114237.1;transl_table=11 NC_008258.1 RefSeq gene 4483081 4483476 . + . ID=gene4755;Name=SFV_RS23885;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23885 NC_008258.1 Protein Homology CDS 4483081 4483476 . + 0 ID=cds4639;Parent=gene4755;Dbxref=Genbank:WP_005064545.1;Name=WP_005064545.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005064545.1;transl_table=11 NC_008258.1 RefSeq gene 4483463 4483732 . + . ID=gene4756;Name=SFV_RS23890;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23890;partial=true;pseudo=true;start_range=.,4483463 NC_008258.1 Protein Homology CDS 4483463 4483732 . + 0 ID=cds4640;Parent=gene4756;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4483463;transl_table=11 NC_008258.1 RefSeq gene 4483742 4484380 . + . ID=gene4757;Name=SFV_RS23895;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23895;old_locus_tag=SFV_4341 NC_008258.1 Protein Homology CDS 4483742 4484380 . + 0 ID=cds4641;Parent=gene4757;Dbxref=Genbank:WP_000101680.1;Name=WP_000101680.1;gbkey=CDS;product=membrane protein;protein_id=WP_000101680.1;transl_table=11 NC_008258.1 RefSeq gene 4484383 4485546 . + . ID=gene4758;Name=SFV_RS23900;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23900;pseudo=true NC_008258.1 Protein Homology CDS 4484383 4485546 . + 0 ID=cds4642;Parent=gene4758;gbkey=CDS;product=hypothetical protein;pseudo=true;transl_except=(pos:4484698..4484700%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4485630 4487255 . + . ID=gene4759;Name=SFV_RS23905;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23905;old_locus_tag=SFV_4343 NC_008258.1 Protein Homology CDS 4485630 4487255 . + 0 ID=cds4643;Parent=gene4759;Dbxref=Genbank:WP_005059779.1;Name=WP_005059779.1;Note=catalyzes the formation of 3-methylcrotonyl-CoA from isovaleryl-CoA;gbkey=CDS;product=isovaleryl CoA dehydrogenase;protein_id=WP_005059779.1;transl_table=11 NC_008258.1 RefSeq gene 4487372 4487647 . - . ID=gene4760;Name=SFV_RS23910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23910;old_locus_tag=SFV_4344 NC_008258.1 Protein Homology CDS 4487372 4487647 . - 0 ID=cds4644;Parent=gene4760;Dbxref=Genbank:WP_000811566.1;Name=WP_000811566.1;gbkey=CDS;product=DUF1471 domain-containing protein;protein_id=WP_000811566.1;transl_table=11 NC_008258.1 RefSeq gene 4487796 4488125 . - . ID=gene4761;Name=SFV_RS23915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23915 NC_008258.1 Protein Homology CDS 4487796 4488125 . - 0 ID=cds4645;Parent=gene4761;Dbxref=Genbank:WP_000254636.1;Name=WP_000254636.1;Note=in Escherichia coli%2C mutation of this gene affects biofilm maturation%2C stress response%2C and motility;gbkey=CDS;product=lipoprotein BsmA;protein_id=WP_000254636.1;transl_table=11 NC_008258.1 RefSeq gene 4488307 4489056 . + . ID=gene4762;Name=SFV_RS23920;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23920;old_locus_tag=SFV_4346 NC_008258.1 Protein Homology CDS 4488307 4489056 . + 0 ID=cds4646;Parent=gene4762;Dbxref=Genbank:WP_000569721.1;Name=WP_000569721.1;Note=YjfP%3B esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro%3B unknown function and substrate in vivo;gbkey=CDS;product=esterase;protein_id=WP_000569721.1;transl_table=11 NC_008258.1 RefSeq gene 4489053 4489808 . - . ID=gene4763;Name=SFV_RS23925;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23925;old_locus_tag=SFV_4347 NC_008258.1 Protein Homology CDS 4489053 4489808 . - 0 ID=cds4647;Parent=gene4763;Dbxref=Genbank:WP_000133645.1;Name=WP_000133645.1;Note=negative regulator of ulaG and ulaABCDEF;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000133645.1;transl_table=11 NC_008258.1 RefSeq gene 4489916 4490980 . - . ID=gene4764;Name=SFV_RS23930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23930;old_locus_tag=SFV_4348 NC_008258.1 Protein Homology CDS 4489916 4490980 . - 0 ID=cds4648;Parent=gene4764;Dbxref=Genbank:WP_024260328.1;Name=WP_024260328.1;gbkey=CDS;product=ascorbate 6-phosphate lactonase;protein_id=WP_024260328.1;transl_table=11 NC_008258.1 RefSeq gene 4491335 4492732 . + . ID=gene4765;Name=SFV_RS23935;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23935;old_locus_tag=SFV_4349;pseudo=true NC_008258.1 Protein Homology CDS 4491335 4492732 . + 0 ID=cds4649;Parent=gene4765;gbkey=CDS;product=PTS ascorbate transporter subunit IIC;pseudo=true;transl_except=(pos:4492571..4492573%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4492748 4493053 . + . ID=gene4766;Name=SFV_RS23940;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23940;old_locus_tag=SFV_4350 NC_008258.1 Protein Homology CDS 4492748 4493053 . + 0 ID=cds4650;Parent=gene4766;Dbxref=Genbank:WP_000218360.1;Name=WP_000218360.1;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=ascorbate-specific phosphotransferase enzyme IIB component;protein_id=WP_000218360.1;transl_table=11 NC_008258.1 RefSeq gene 4493063 4493527 . + . ID=gene4767;Name=SFV_RS23945;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23945;old_locus_tag=SFV_4351 NC_008258.1 Protein Homology CDS 4493063 4493527 . + 0 ID=cds4651;Parent=gene4767;Dbxref=Genbank:WP_000766068.1;Name=WP_000766068.1;Note=involved in the phosphorylation and transport of sugars across the cell membrane%3B protein IIA transfers a phosphoryl group to IIB which then transfers the phosphoryl group to the sugar%3B IIC forms the translocation channel for the sugar uptake;gbkey=CDS;product=ascorbate-specific phosphotransferase enzyme IIA component;protein_id=WP_000766068.1;transl_table=11 NC_008258.1 RefSeq gene 4493541 4494191 . + . ID=gene4768;Name=ulaD;gbkey=Gene;gene=ulaD;gene_biotype=protein_coding;locus_tag=SFV_RS23950;old_locus_tag=SFV_4352 NC_008258.1 Protein Homology CDS 4493541 4494191 . + 0 ID=cds4652;Parent=gene4768;Dbxref=Genbank:WP_000056760.1;Name=WP_000056760.1;Note=catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization;gbkey=CDS;gene=ulaD;product=3-keto-L-gulonate-6-phosphate decarboxylase ulaD;protein_id=WP_000056760.1;transl_table=11 NC_008258.1 RefSeq gene 4494201 4495055 . + . ID=gene4769;Name=SFV_RS23955;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23955;old_locus_tag=SFV_4353 NC_008258.1 Protein Homology CDS 4494201 4495055 . + 0 ID=cds4653;Parent=gene4769;Dbxref=Genbank:WP_000949548.1;Name=WP_000949548.1;gbkey=CDS;product=L-ribulose-5-phosphate 3-epimerase UlaE;protein_id=WP_000949548.1;transl_table=11 NC_008258.1 RefSeq gene 4495055 4495741 . + . ID=gene4770;Name=araD;gbkey=Gene;gene=araD;gene_biotype=protein_coding;locus_tag=SFV_RS23960;old_locus_tag=SFV_4354 NC_008258.1 Protein Homology CDS 4495055 4495741 . + 0 ID=cds4654;Parent=gene4770;Dbxref=Genbank:WP_001170813.1;Name=WP_001170813.1;Note=catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate%3B links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source;gbkey=CDS;gene=araD;product=L-ribulose-5-phosphate 4-epimerase UlaF;protein_id=WP_001170813.1;transl_table=11 NC_008258.1 RefSeq gene 4495870 4496145 . - . ID=gene4771;Name=SFV_RS23965;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23965;old_locus_tag=SFV_4355 NC_008258.1 Protein Homology CDS 4495870 4496145 . - 0 ID=cds4655;Parent=gene4771;Dbxref=Genbank:WP_000492914.1;Name=WP_000492914.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000492914.1;transl_table=11 NC_008258.1 RefSeq gene 4496229 4496348 . + . ID=gene4772;Name=SFV_RS23970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23970 NC_008258.1 Protein Homology CDS 4496229 4496348 . + 0 ID=cds4656;Parent=gene4772;Dbxref=Genbank:WP_032155818.1;Name=WP_032155818.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_032155818.1;transl_table=11 NC_008258.1 RefSeq gene 4496472 4496867 . + . ID=gene4773;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=SFV_RS23975;old_locus_tag=SFV_4356 NC_008258.1 Protein Homology CDS 4496472 4496867 . + 0 ID=cds4657;Parent=gene4773;Dbxref=Genbank:WP_001216676.1;Name=WP_001216676.1;Note=binds cooperatively with S18 to the S15-16S complex%2C allowing platform assembly to continue with S11 and S21;gbkey=CDS;gene=rpsF;product=30S ribosomal protein S6;protein_id=WP_001216676.1;transl_table=11 NC_008258.1 RefSeq gene 4496874 4497188 . + . ID=gene4774;Name=SFV_RS23980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS23980 NC_008258.1 Protein Homology CDS 4496874 4497188 . + 0 ID=cds4658;Parent=gene4774;Dbxref=Genbank:WP_001296681.1;Name=WP_001296681.1;Note=binds single-stranded DNA at the primosome assembly site;gbkey=CDS;product=primosomal replication protein n;protein_id=WP_001296681.1;transl_table=11 NC_008258.1 RefSeq gene 4497193 4497420 . + . ID=gene4775;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=SFV_RS23985;old_locus_tag=SFV_4357 NC_008258.1 Protein Homology CDS 4497193 4497420 . + 0 ID=cds4659;Parent=gene4775;Dbxref=Genbank:WP_000135199.1;Name=WP_000135199.1;Note=binds as a heterodimer with protein S6 to the central domain of the 16S rRNA%3B helps stabilize the platform of the 30S subunit;gbkey=CDS;gene=rpsR;product=30S ribosomal protein S18;protein_id=WP_000135199.1;transl_table=11 NC_008258.1 RefSeq gene 4497462 4497911 . + . ID=gene4776;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=SFV_RS23990;old_locus_tag=SFV_4358 NC_008258.1 Protein Homology CDS 4497462 4497911 . + 0 ID=cds4660;Parent=gene4776;Dbxref=Genbank:WP_001196062.1;Name=WP_001196062.1;Note=in Escherichia coli this protein is wrapped around the base of the L1 stalk;gbkey=CDS;gene=rplI;product=50S ribosomal protein L9;protein_id=WP_001196062.1;transl_table=11 NC_008258.1 RefSeq gene 4497982 4498551 . - . ID=gene4777;Name=SFV_RS23995;end_range=4498551,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS23995;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 4497982 4498551 . - 0 ID=cds4661;Parent=gene4777;end_range=4498551,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;transl_table=11 NC_008258.1 RefSeq repeat_region 4498544 4500788 . + . ID=id706;gbkey=repeat_region NC_008258.1 RefSeq gene 4498609 4498887 . + . ID=gene4778;Name=SFV_RS24000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24000;old_locus_tag=SFV_4359 NC_008258.1 Protein Homology CDS 4498609 4498887 . + 0 ID=cds4662;Parent=gene4778;Dbxref=Genbank:WP_000015547.1;Name=WP_000015547.1;gbkey=CDS;product=transposase;protein_id=WP_000015547.1;transl_table=11 NC_008258.1 RefSeq gene 4498944 4499522 . + . ID=gene4779;Name=SFV_RS24005;end_range=4499522,.;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24005;old_locus_tag=SFV_4360;partial=true;pseudo=true NC_008258.1 Protein Homology CDS 4498944 4499522 . + 0 ID=cds4663;Parent=gene4779;end_range=4499522,.;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=transposase;pseudo=true;transl_table=11 NC_008258.1 RefSeq region 4499523 4500786 . - . ID=id707;gbkey=mobile_element NC_008258.1 RefSeq gene 4499566 4500384 . - . ID=gene4780;Name=SFV_RS24010;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24010;old_locus_tag=SFV_4361 NC_008258.1 Protein Homology CDS 4499566 4500384 . - 0 ID=cds4664;Parent=gene4780;Dbxref=Genbank:WP_024260329.1;Name=WP_024260329.1;gbkey=CDS;product=transposase;protein_id=WP_024260329.1;transl_table=11 NC_008258.1 RefSeq gene 4500420 4500722 . - . ID=gene4781;Name=SFV_RS24015;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24015;old_locus_tag=SFV_4362 NC_008258.1 Protein Homology CDS 4500420 4500722 . - 0 ID=cds4665;Parent=gene4781;Dbxref=Genbank:WP_000088311.1;Name=WP_000088311.1;gbkey=CDS;product=transposase;protein_id=WP_000088311.1;transl_table=11 NC_008258.1 RefSeq gene 4500787 4501107 . + . ID=gene4782;Name=SFV_RS24020;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24020;old_locus_tag=SFV_4363 NC_008258.1 Protein Homology CDS 4500787 4501107 . + 0 ID=cds4666;Parent=gene4782;Dbxref=Genbank:WP_000895690.1;Name=WP_000895690.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000895690.1;transl_table=11 NC_008258.1 RefSeq gene 4501154 4501495 . - . ID=gene4783;Name=SFV_RS24025;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24025;old_locus_tag=SFV_4364 NC_008258.1 Protein Homology CDS 4501154 4501495 . - 0 ID=cds4667;Parent=gene4783;Dbxref=Genbank:WP_000132640.1;Name=WP_000132640.1;Note=involved in the degradation of RNA%3B may be involved in the recycling of RNA during the SOS response;gbkey=CDS;product=hypothetical protein;protein_id=WP_000132640.1;transl_table=11 NC_008258.1 RefSeq gene 4501716 4503377 . - . ID=gene4784;Name=SFV_RS24030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24030;old_locus_tag=SFV_4365 NC_008258.1 Protein Homology CDS 4501716 4503377 . - 0 ID=cds4668;Parent=gene4784;Dbxref=Genbank:WP_000110073.1;Name=WP_000110073.1;gbkey=CDS;product=type I restriction endonuclease EcoAI subunit S;protein_id=WP_000110073.1;transl_table=11 NC_008258.1 RefSeq gene 4503377 4504846 . - . ID=gene4785;Name=SFV_RS24035;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24035;old_locus_tag=SFV_4366 NC_008258.1 Protein Homology CDS 4503377 4504846 . - 0 ID=cds4669;Parent=gene4785;Dbxref=Genbank:WP_001387312.1;Name=WP_001387312.1;gbkey=CDS;product=restriction endonuclease EcoEI subunit M;protein_id=WP_001387312.1;transl_table=11 NC_008258.1 RefSeq gene 4504913 4507345 . - . ID=gene4786;Name=SFV_RS24040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24040;old_locus_tag=SFV_4367 NC_008258.1 Protein Homology CDS 4504913 4507345 . - 0 ID=cds4670;Parent=gene4786;Dbxref=Genbank:WP_000819007.1;Name=WP_000819007.1;gbkey=CDS;product=DEAD/DEAH box helicase;protein_id=WP_000819007.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4507586 4508363 . + . ID=id708;gbkey=repeat_region NC_008258.1 RefSeq region 4507587 4508354 . + . ID=id709;gbkey=mobile_element NC_008258.1 RefSeq gene 4507836 4508339 . + . ID=gene4787;Name=SFV_RS24045;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24045;old_locus_tag=SFV_4369 NC_008258.1 Protein Homology CDS 4507836 4508339 . + 0 ID=cds4671;Parent=gene4787;Dbxref=Genbank:WP_005061861.1;Name=WP_005061861.1;gbkey=CDS;product=transposase;protein_id=WP_005061861.1;transl_table=11 NC_008258.1 RefSeq gene 4508355 4509116 . + . ID=gene4788;Name=SFV_RS24050;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24050;old_locus_tag=SFV_4370;partial=true;pseudo=true;start_range=.,4508355 NC_008258.1 Protein Homology CDS 4508355 4509116 . + 0 ID=cds4672;Parent=gene4788;exception=unextendable partial coding region;gbkey=CDS;partial=true;product=hypothetical protein;pseudo=true;start_range=.,4508355;transl_table=11 NC_008258.1 RefSeq gene 4509185 4510141 . - . ID=gene4789;Name=SFV_RS24055;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24055;old_locus_tag=SFV_4371 NC_008258.1 Protein Homology CDS 4509185 4510141 . - 0 ID=cds4673;Parent=gene4789;Dbxref=Genbank:WP_005053801.1;Name=WP_005053801.1;gbkey=CDS;product=GTP-binding protein;protein_id=WP_005053801.1;transl_table=11 NC_008258.1 RefSeq gene 4510152 4510355 . - . ID=gene4790;Name=SFV_RS24060;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24060;old_locus_tag=SFV_4372 NC_008258.1 Protein Homology CDS 4510152 4510355 . - 0 ID=cds4674;Parent=gene4790;Dbxref=Genbank:WP_000467859.1;Name=WP_000467859.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000467859.1;transl_table=11 NC_008258.1 RefSeq gene 4510405 4512555 . - . ID=gene4791;Name=SFV_RS24065;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24065;old_locus_tag=SFV_4373 NC_008258.1 Protein Homology CDS 4510405 4512555 . - 0 ID=cds4675;Parent=gene4791;Dbxref=Genbank:WP_001298933.1;Name=WP_001298933.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001298933.1;transl_table=11 NC_008258.1 RefSeq gene 4512723 4512869 . - . ID=gene4792;Name=SFV_RS24070;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24070 NC_008258.1 Protein Homology CDS 4512723 4512869 . - 0 ID=cds4676;Parent=gene4792;Dbxref=Genbank:WP_005053796.1;Name=WP_005053796.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005053796.1;transl_table=11 NC_008258.1 RefSeq gene 4512948 4513460 . - . ID=gene4793;Name=hpaC;gbkey=Gene;gene=hpaC;gene_biotype=protein_coding;locus_tag=SFV_RS24075;old_locus_tag=SFV_4374 NC_008258.1 Protein Homology CDS 4512948 4513460 . - 0 ID=cds4677;Parent=gene4793;Dbxref=Genbank:WP_001175448.1;Name=WP_001175448.1;Note=catalyzes the reduction of MN%2C FAD and riboflavin by NADH;gbkey=CDS;gene=hpaC;product=4-hydroxyphenylacetate 3-monooxygenase;protein_id=WP_001175448.1;transl_table=11 NC_008258.1 RefSeq gene 4513478 4515036 . - . ID=gene4794;Name=SFV_RS24080;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24080;pseudo=true NC_008258.1 Protein Homology CDS 4513478 4515036 . - 0 ID=cds4678;Parent=gene4794;exception=annotated by transcript or proteomic data;gbkey=CDS;product=Pyoverdin chromophore biosynthetic protein pvcC;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4515289 4516119 . - . ID=gene4795;Name=SFV_RS24085;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24085;old_locus_tag=SFV_4376 NC_008258.1 Protein Homology CDS 4515289 4516119 . - 0 ID=cds4679;Parent=gene4795;Dbxref=Genbank:WP_005106336.1;Name=WP_005106336.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005106336.1;transl_table=11 NC_008258.1 RefSeq gene 4516227 4517117 . - . ID=gene4796;Name=SFV_RS24090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24090;old_locus_tag=SFV_4377 NC_008258.1 Protein Homology CDS 4516227 4517117 . - 0 ID=cds4680;Parent=gene4796;Dbxref=Genbank:WP_000093495.1;Name=WP_000093495.1;gbkey=CDS;product=4-hydroxyphenylacetate catabolism protein;protein_id=WP_000093495.1;transl_table=11 NC_008258.1 RefSeq gene 4517127 4518482 . - . ID=gene4797;Name=SFV_RS24095;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24095;old_locus_tag=SFV_4378 NC_008258.1 Protein Homology CDS 4517127 4518482 . - 0 ID=cds4681;Parent=gene4797;Dbxref=Genbank:WP_000213780.1;Name=WP_000213780.1;gbkey=CDS;product=4-hydroxyphenylacetate permease;protein_id=WP_000213780.1;transl_table=11 NC_008258.1 RefSeq gene 4518504 4519303 . - . ID=gene4798;Name=SFV_RS24100;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24100;pseudo=true NC_008258.1 Protein Homology CDS 4518504 4519303 . - 0 ID=cds4682;Parent=gene4798;exception=annotated by transcript or proteomic data;gbkey=CDS;product=4-hydroxy-2-oxo-heptane-1%2C7-dioate aldolase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4519314 4520117 . - . ID=gene4799;Name=SFV_RS24105;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24105;old_locus_tag=SFV_4380 NC_008258.1 Protein Homology CDS 4519314 4520117 . - 0 ID=cds4683;Parent=gene4799;Dbxref=Genbank:WP_000459756.1;Name=WP_000459756.1;gbkey=CDS;product=2-oxo-hept-3-ene-1%2C7-dioate hydratase;protein_id=WP_000459756.1;transl_table=11 NC_008258.1 RefSeq gene 4520185 4520565 . - . ID=gene4800;Name=SFV_RS24110;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24110;old_locus_tag=SFV_4381 NC_008258.1 Protein Homology CDS 4520185 4520565 . - 0 ID=cds4684;Parent=gene4800;Dbxref=Genbank:WP_001119867.1;Name=WP_001119867.1;Note=catalyzes the formation of 5-oxo-pent-3-ene-1%2C2%2C5-tricarboxylic acid from 5-carboxymethyl-2-hydroxy-muconic acid;gbkey=CDS;product=5-carboxymethyl-2-hydroxymuconate isomerase;protein_id=WP_001119867.1;transl_table=11 NC_008258.1 RefSeq gene 4520575 4521429 . - . ID=gene4801;Name=SFV_RS24115;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24115;old_locus_tag=SFV_4382 NC_008258.1 Protein Homology CDS 4520575 4521429 . - 0 ID=cds4685;Parent=gene4801;Dbxref=Genbank:WP_000516995.1;Name=WP_000516995.1;gbkey=CDS;product=3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase;protein_id=WP_000516995.1;transl_table=11 NC_008258.1 RefSeq gene 4521431 4522897 . - . ID=gene4802;Name=SFV_RS24120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24120;old_locus_tag=SFV_4383 NC_008258.1 Protein Homology CDS 4521431 4522897 . - 0 ID=cds4686;Parent=gene4802;Dbxref=Genbank:WP_000757498.1;Name=WP_000757498.1;Note=catalyzes the formation of betaine from betaine aldehyde;gbkey=CDS;product=betaine-aldehyde dehydrogenase;protein_id=WP_000757498.1;transl_table=11 NC_008258.1 RefSeq gene 4522894 4524183 . - . ID=gene4803;Name=SFV_RS24125;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24125;old_locus_tag=SFV_4384 NC_008258.1 Protein Homology CDS 4522894 4524183 . - 0 ID=cds4687;Parent=gene4803;Dbxref=Genbank:WP_000679097.1;Name=WP_000679097.1;gbkey=CDS;product=2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomerase;protein_id=WP_000679097.1;transl_table=11 NC_008258.1 RefSeq gene 4524455 4524901 . + . ID=gene4804;Name=SFV_RS24130;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24130;old_locus_tag=SFV_4385 NC_008258.1 Protein Homology CDS 4524455 4524901 . + 0 ID=cds4688;Parent=gene4804;Dbxref=Genbank:WP_000543916.1;Name=WP_000543916.1;gbkey=CDS;product=homoprotocatechuate degradative operon repressor;protein_id=WP_000543916.1;transl_table=11 NC_008258.1 RefSeq gene 4525020 4526684 . + . ID=gene4805;Name=SFV_RS24135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24135;old_locus_tag=SFV_4386 NC_008258.1 Protein Homology CDS 4525020 4526684 . + 0 ID=cds4689;Parent=gene4805;Dbxref=Genbank:WP_000919528.1;Name=WP_000919528.1;Note=serine sensor receptor;gbkey=CDS;product=methyl-accepting chemotaxis protein;protein_id=WP_000919528.1;transl_table=11 NC_008258.1 RefSeq gene 4526733 4528094 . - . ID=gene4806;Name=SFV_RS24140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24140;old_locus_tag=SFV_4387 NC_008258.1 Protein Homology CDS 4526733 4528094 . - 0 ID=cds4690;Parent=gene4806;Dbxref=Genbank:WP_000410138.1;Name=WP_000410138.1;gbkey=CDS;product=transporter;protein_id=WP_000410138.1;transl_table=11 NC_008258.1 RefSeq gene 4528309 4529223 . - . ID=gene4807;Name=SFV_RS24145;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24145;pseudo=true NC_008258.1 Protein Homology CDS 4528309 4529223 . - 0 ID=cds4691;Parent=gene4807;gbkey=CDS;product=GntR family transcriptional regulator;pseudo=true;transl_except=(pos:complement(4528528..4528530)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4529362 4530384 . + . ID=gene4808;Name=SFV_RS24150;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24150;pseudo=true NC_008258.1 Protein Homology CDS 4529362 4530384 . + 0 ID=cds4692;Parent=gene4808;gbkey=CDS;product=galactonate oxidoreductase;pseudo=true;transl_except=(pos:4529392..4529394%2Caa:Other),(pos:4529500..4529502%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4530522 4532812 . - . ID=gene4809;Name=SFV_RS24155;gbkey=Gene;gene_biotype=pseudogene;locus_tag=SFV_RS24155;old_locus_tag=SFV_4390;pseudo=true NC_008258.1 Protein Homology CDS 4530522 4532812 . - 0 ID=cds4693;Parent=gene4809;Note=catalyzes the transfer of phosphoglycerol to the glucan backbone;exception=annotated by transcript or proteomic data;gbkey=CDS;product=phosphoglycerol transferase I;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4533066 4533557 . - . ID=gene4810;Name=SFV_RS24160;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24160;old_locus_tag=SFV_4391 NC_008258.1 Protein Homology CDS 4533066 4533557 . - 0 ID=cds4694;Parent=gene4810;Dbxref=Genbank:WP_001393096.1;Name=WP_001393096.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001393096.1;transl_table=11 NC_008258.1 RefSeq gene 4533609 4534346 . - . ID=gene4811;Name=SFV_RS24165;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24165;old_locus_tag=SFV_4392 NC_008258.1 Protein Homology CDS 4533609 4534346 . - 0 ID=cds4695;Parent=gene4811;Dbxref=Genbank:WP_000799911.1;Name=WP_000799911.1;Note=acts to load the DnaB helicase onto the initiation site during DNA replication;gbkey=CDS;product=DNA replication protein DnaC;protein_id=WP_000799911.1;transl_table=11 NC_008258.1 RefSeq gene 4534349 4534888 . - . ID=gene4812;Name=SFV_RS24170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24170;old_locus_tag=SFV_4393 NC_008258.1 Protein Homology CDS 4534349 4534888 . - 0 ID=cds4696;Parent=gene4812;Dbxref=Genbank:WP_000098818.1;Name=WP_000098818.1;Note=This protein is required for primosome-dependent normal DNA replication%3B it is also involved in inducing stable DNA replication during SOS response. It forms%2C in concert with dnaB protein and other prepriming proteins dnaC%2C N%2C N'%2C N'' a prepriming protein complex on the specific site of the template DNA recognized by protein N';gbkey=CDS;product=primosomal protein 1;protein_id=WP_000098818.1;transl_table=11 NC_008258.1 RefSeq gene 4534995 4535468 . - . ID=gene4813;Name=SFV_RS24175;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24175;old_locus_tag=SFV_4394 NC_008258.1 Protein Homology CDS 4534995 4535468 . - 0 ID=cds4697;Parent=gene4813;Dbxref=Genbank:WP_000538192.1;Name=WP_000538192.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000538192.1;transl_table=11 NC_008258.1 RefSeq gene 4535459 4536229 . - . ID=gene4814;Name=SFV_RS24180;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24180;old_locus_tag=SFV_4395 NC_008258.1 Protein Homology CDS 4535459 4536229 . - 0 ID=cds4698;Parent=gene4814;Dbxref=Genbank:WP_001338213.1;Name=WP_001338213.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001338213.1;transl_table=11 NC_008258.1 RefSeq repeat_region 4536794 4537568 . + . ID=id710;gbkey=repeat_region NC_008258.1 RefSeq region 4536798 4537565 . + . ID=id711;gbkey=mobile_element NC_008258.1 RefSeq gene 4537047 4537550 . + . ID=gene4815;Name=SFV_RS24185;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24185;old_locus_tag=SFV_4397 NC_008258.1 Protein Homology CDS 4537047 4537550 . + 0 ID=cds4699;Parent=gene4815;Dbxref=Genbank:WP_005048937.1;Name=WP_005048937.1;gbkey=CDS;product=insertion element IS1 protein InsB;protein_id=WP_005048937.1;transl_table=11 NC_008258.1 RefSeq gene 4537552 4538136 . + . ID=gene4816;Name=SFV_RS24190;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24190;old_locus_tag=SFV_4398 NC_008258.1 Protein Homology CDS 4537552 4538136 . + 0 ID=cds4700;Parent=gene4816;Dbxref=Genbank:WP_000445005.1;Name=WP_000445005.1;gbkey=CDS;product=LuxR family transcriptional regulator;protein_id=WP_000445005.1;transl_table=11 NC_008258.1 RefSeq gene 4538094 4538771 . + . ID=gene4817;Name=SFV_RS24195;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24195;old_locus_tag=SFV_4399 NC_008258.1 Protein Homology CDS 4538094 4538771 . + 0 ID=cds4701;Parent=gene4817;Dbxref=Genbank:WP_005106344.1;Name=WP_005106344.1;Note=regulator for the transport and utilization of the aromatic beta-glucosides arbutin and silicin;gbkey=CDS;product=transcriptional regulator;protein_id=WP_005106344.1;transl_table=11 NC_008258.1 RefSeq gene 4538809 4539597 . - . ID=gene4818;Name=SFV_RS24200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24200;old_locus_tag=SFV_4400 NC_008258.1 Protein Homology CDS 4538809 4539597 . - 0 ID=cds4702;Parent=gene4818;Dbxref=Genbank:WP_000331585.1;Name=WP_000331585.1;gbkey=CDS;product=ferric iron reductase involved in ferric hydroximate transport;protein_id=WP_000331585.1;transl_table=11 NC_008258.1 RefSeq gene 4539699 4539974 . + . ID=gene4819;Name=SFV_RS24205;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24205 NC_008258.1 Protein Homology CDS 4539699 4539974 . + 0 ID=cds4703;Parent=gene4819;Dbxref=Genbank:WP_000604352.1;Name=WP_000604352.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000604352.1;transl_table=11 NC_008258.1 RefSeq gene 4540013 4540099 . - . ID=gene4820;Name=SFV_RS24210;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS24210;old_locus_tag=SFV_4402 NC_008258.1 tRNAscan-SE tRNA 4540013 4540099 . - . ID=rna116;Parent=gene4820;anticodon=(pos:complement(4540063..4540065));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 4540013 4540099 . - . ID=id712;Parent=rna116;anticodon=(pos:complement(4540063..4540065));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 4540134 4540220 . - . ID=gene4821;Name=SFV_RS24215;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS24215;old_locus_tag=SFV_4403 NC_008258.1 tRNAscan-SE tRNA 4540134 4540220 . - . ID=rna117;Parent=gene4821;anticodon=(pos:complement(4540184..4540186));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 4540134 4540220 . - . ID=id713;Parent=rna117;anticodon=(pos:complement(4540184..4540186));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 4540249 4540335 . - . ID=gene4822;Name=SFV_RS24220;gbkey=Gene;gene_biotype=tRNA;locus_tag=SFV_RS24220;old_locus_tag=SFV_4404 NC_008258.1 tRNAscan-SE tRNA 4540249 4540335 . - . ID=rna118;Parent=gene4822;anticodon=(pos:complement(4540299..4540301));gbkey=tRNA;product=tRNA-Leu NC_008258.1 tRNAscan-SE exon 4540249 4540335 . - . ID=id714;Parent=rna118;anticodon=(pos:complement(4540299..4540301));gbkey=tRNA;product=tRNA-Leu NC_008258.1 RefSeq gene 4540612 4541643 . - . ID=gene4823;Name=rsmC;gbkey=Gene;gene=rsmC;gene_biotype=protein_coding;locus_tag=SFV_RS24225;old_locus_tag=SFV_4405 NC_008258.1 Protein Homology CDS 4540612 4541643 . - 0 ID=cds4704;Parent=gene4823;Dbxref=Genbank:WP_001272361.1;Name=WP_001272361.1;Note=16S rRNA M2G1207 methyltransferase%3B one of many enzymes that modify bases of the ribosomal RNA%3B this enzyme methylates the G at position 1207 of the small ribosomal subunit;gbkey=CDS;gene=rsmC;product=ribosomal RNA small subunit methyltransferase C;protein_id=WP_001272361.1;transl_table=11 NC_008258.1 RefSeq gene 4541746 4542159 . + . ID=gene4824;Name=SFV_RS24230;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24230;old_locus_tag=SFV_4406 NC_008258.1 Protein Homology CDS 4541746 4542159 . + 0 ID=cds4705;Parent=gene4824;Dbxref=Genbank:WP_000204032.1;Name=WP_000204032.1;Note=with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB;gbkey=CDS;product=DNA polymerase III subunit psi;protein_id=WP_000204032.1;transl_table=11 NC_008258.1 RefSeq gene 4542128 4542574 . + . ID=gene4825;Name=rimI;gbkey=Gene;gene=rimI;gene_biotype=protein_coding;locus_tag=SFV_RS24235;old_locus_tag=SFV_4407 NC_008258.1 Protein Homology CDS 4542128 4542574 . + 0 ID=cds4706;Parent=gene4825;Dbxref=Genbank:WP_001092461.1;Name=WP_001092461.1;Note=alanine acetyltransferase that specifically acetylates ribosomal protein S18;gbkey=CDS;gene=rimI;product=ribosomal-protein-alanine acetyltransferase;protein_id=WP_001092461.1;transl_table=11 NC_008258.1 RefSeq gene 4542589 4543266 . + . ID=gene4826;Name=SFV_RS24240;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24240;old_locus_tag=SFV_4408 NC_008258.1 Protein Homology CDS 4542589 4543266 . + 0 ID=cds4707;Parent=gene4826;Dbxref=Genbank:WP_000870701.1;Name=WP_000870701.1;Note=manganese-dependent 5'-nucleotidase%3B specific for 5'-UMP%2C 5'-dUMP%2C and 5'-dTMP%3B member of haloacid dehalogenase (HAD)-like hydrolase superfamily;gbkey=CDS;product=dUMP phosphatase;protein_id=WP_000870701.1;transl_table=11 NC_008258.1 RefSeq gene 4543357 4544946 . + . ID=gene4827;Name=prfC;gbkey=Gene;gene=prfC;gene_biotype=protein_coding;locus_tag=SFV_RS24245;old_locus_tag=SFV_4409 NC_008258.1 Protein Homology CDS 4543357 4544946 . + 0 ID=cds4708;Parent=gene4827;Dbxref=Genbank:WP_000175933.1;Name=WP_000175933.1;Note=stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred%3B GDP/GTP-binding protein;gbkey=CDS;gene=prfC;product=peptide chain release factor 3;protein_id=WP_000175933.1;transl_table=11 NC_008258.1 RefSeq gene 4545339 4545944 . + . ID=gene4828;Name=SFV_RS24250;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24250;old_locus_tag=SFV_4410 NC_008258.1 Protein Homology CDS 4545339 4545944 . + 0 ID=cds4709;Parent=gene4828;Dbxref=Genbank:WP_001295410.1;Name=WP_001295410.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001295410.1;transl_table=11 NC_008258.1 RefSeq gene 4546071 4546232 . + . ID=gene4829;Name=SFV_RS24255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24255 NC_008258.1 Protein Homology CDS 4546071 4546232 . + 0 ID=cds4710;Parent=gene4829;Dbxref=Genbank:WP_000490275.1;Name=WP_000490275.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000490275.1;transl_table=11 NC_008258.1 RefSeq gene 4546354 4547427 . + . ID=gene4830;Name=SFV_RS24260;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24260;old_locus_tag=SFV_4411 NC_008258.1 Protein Homology CDS 4546354 4547427 . + 0 ID=cds4711;Parent=gene4830;Dbxref=Genbank:WP_005053752.1;Name=WP_005053752.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_005053752.1;transl_table=11 NC_008258.1 RefSeq gene 4547424 4548206 . + . ID=gene4831;Name=SFV_RS24265;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24265;old_locus_tag=SFV_4412 NC_008258.1 Protein Homology CDS 4547424 4548206 . + 0 ID=cds4712;Parent=gene4831;Dbxref=Genbank:WP_000563017.1;Name=WP_000563017.1;gbkey=CDS;product=deoxyribonuclease;protein_id=WP_000563017.1;transl_table=11 NC_008258.1 RefSeq gene 4548420 4549283 . - . ID=gene4832;Name=SFV_RS24270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24270;old_locus_tag=SFV_4413 NC_008258.1 Protein Homology CDS 4548420 4549283 . - 0 ID=cds4713;Parent=gene4832;Dbxref=Genbank:WP_001088391.1;Name=WP_001088391.1;gbkey=CDS;product=glycine radical enzyme activase;protein_id=WP_001088391.1;transl_table=11 NC_008258.1 RefSeq gene 4549255 4550796 . - . ID=gene4833;Name=SFV_RS24275;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24275;old_locus_tag=SFV_4414 NC_008258.1 Protein Homology CDS 4549255 4550796 . - 0 ID=cds4714;Parent=gene4833;Dbxref=Genbank:WP_001143225.1;Name=WP_001143225.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001143225.1;transl_table=11 NC_008258.1 RefSeq gene 4550848 4550949 . + . ID=gene4834;Name=SFV_RS24280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24280 NC_008258.1 Protein Homology CDS 4550848 4550949 . + 0 ID=cds4715;Parent=gene4834;Dbxref=Genbank:WP_000494556.1;Name=WP_000494556.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_000494556.1;transl_table=11 NC_008258.1 RefSeq gene 4551054 4551833 . + . ID=gene4835;Name=SFV_RS24285;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24285;old_locus_tag=SFV_4415 NC_008258.1 Protein Homology CDS 4551054 4551833 . + 0 ID=cds4716;Parent=gene4835;Dbxref=Genbank:WP_005053747.1;Name=WP_005053747.1;Note=catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate;gbkey=CDS;product=deoxyribose-phosphate aldolase;protein_id=WP_005053747.1;transl_table=11 NC_008258.1 RefSeq gene 4551960 4553282 . + . ID=gene4836;Name=SFV_RS24290;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24290;old_locus_tag=SFV_4416 NC_008258.1 Protein Homology CDS 4551960 4553282 . + 0 ID=cds4717;Parent=gene4836;Dbxref=Genbank:WP_000477815.1;Name=WP_000477815.1;gbkey=CDS;product=thymidine phosphorylase;protein_id=WP_000477815.1;transl_table=11 NC_008258.1 RefSeq gene 4553334 4554557 . + . ID=gene4837;Name=SFV_RS24295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24295;old_locus_tag=SFV_4417 NC_008258.1 Protein Homology CDS 4553334 4554557 . + 0 ID=cds4718;Parent=gene4837;Dbxref=Genbank:WP_000816471.1;Name=WP_000816471.1;gbkey=CDS;product=phosphopentomutase;protein_id=WP_000816471.1;transl_table=11 NC_008258.1 RefSeq gene 4554614 4555333 . + . ID=gene4838;Name=deoD;gbkey=Gene;gene=deoD;gene_biotype=protein_coding;locus_tag=SFV_RS24300;old_locus_tag=SFV_4418 NC_008258.1 Protein Homology CDS 4554614 4555333 . + 0 ID=cds4719;Parent=gene4838;Dbxref=Genbank:WP_000224879.1;Name=WP_000224879.1;Note=catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate;gbkey=CDS;gene=deoD;product=purine nucleoside phosphorylase;protein_id=WP_000224879.1;transl_table=11 NC_008258.1 RefSeq gene 4555494 4555757 . - . ID=gene4839;Name=SFV_RS24305;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24305;old_locus_tag=SFV_4419 NC_008258.1 Protein Homology CDS 4555494 4555757 . - 0 ID=cds4720;Parent=gene4839;Dbxref=Genbank:WP_000566150.1;Name=WP_000566150.1;gbkey=CDS;product=DNA-binding protein;protein_id=WP_000566150.1;transl_table=11 NC_008258.1 RefSeq gene 4555789 4556804 . - . ID=gene4840;Name=lplA;gbkey=Gene;gene=lplA;gene_biotype=pseudogene;locus_tag=SFV_RS24545;old_locus_tag=SFV_4420;pseudo=true NC_008258.1 Protein Homology CDS 4555789 4556804 . - 0 ID=cds4721;Parent=gene4840;Note=Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl on the lipoate-dependent enzymes. Creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoyl domain of apoproteins;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=lplA;product=lipoate--protein ligase;pseudo=true;transl_except=(pos:complement(4556080..4556082)%2Caa:Other);transl_table=11 NC_008258.1 RefSeq gene 4556832 4557476 . - . ID=gene4841;Name=SFV_RS24320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24320;old_locus_tag=SFV_4421 NC_008258.1 Protein Homology CDS 4556832 4557476 . - 0 ID=cds4722;Parent=gene4841;Dbxref=Genbank:WP_000124615.1;Name=WP_000124615.1;gbkey=CDS;product=protein Smp;protein_id=WP_000124615.1;transl_table=11 NC_008258.1 RefSeq gene 4557582 4558550 . + . ID=gene4842;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=SFV_RS24325;old_locus_tag=SFV_4422 NC_008258.1 Protein Homology CDS 4557582 4558550 . + 0 ID=cds4723;Parent=gene4842;Dbxref=Genbank:WP_001132957.1;Name=WP_001132957.1;Note=catalyzes the formation of serine from O-phosphoserine;gbkey=CDS;gene=serB;product=phosphoserine phosphatase;protein_id=WP_001132957.1;transl_table=11 NC_008258.1 RefSeq gene 4558599 4559981 . + . ID=gene4843;Name=SFV_RS24330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24330;old_locus_tag=SFV_4423 NC_008258.1 Protein Homology CDS 4558599 4559981 . + 0 ID=cds4724;Parent=gene4843;Dbxref=Genbank:WP_005053736.1;Name=WP_005053736.1;Note=Sms%3B stabilizes the strand-invasion intermediate during the DNA repair%3B involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents;gbkey=CDS;product=DNA repair protein RadA;protein_id=WP_005053736.1;transl_table=11 NC_008258.1 RefSeq gene 4560002 4561234 . + . ID=gene4844;Name=SFV_RS24335;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24335;old_locus_tag=SFV_4424 NC_008258.1 Protein Homology CDS 4560002 4561234 . + 0 ID=cds4725;Parent=gene4844;Dbxref=Genbank:WP_000093812.1;Name=WP_000093812.1;Note=catalyzes the formation of NAD(+) from nicotinamide ribonucleotide%3B catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside%3B also has a regulatory function;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000093812.1;transl_table=11 NC_008258.1 RefSeq gene 4561268 4561435 . + . ID=gene4845;Name=SFV_RS24340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24340 NC_008258.1 Protein Homology CDS 4561268 4561435 . + 0 ID=cds4726;Parent=gene4845;Dbxref=Genbank:WP_000007444.1;Name=WP_000007444.1;gbkey=CDS;product=transcriptional regulator;protein_id=WP_000007444.1;transl_table=11 NC_008258.1 RefSeq gene 4561542 4563209 . - . ID=gene4846;Name=SFV_RS24345;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24345;old_locus_tag=SFV_4425 NC_008258.1 Protein Homology CDS 4561542 4563209 . - 0 ID=cds4727;Parent=gene4846;Dbxref=Genbank:WP_000046747.1;Name=WP_000046747.1;Note=ChvD%3B in Agrobacterium tumefaciens%2C mutations in both Walker boxes were found to affect virulence;gbkey=CDS;product=energy-dependent translational throttle protein EttA;protein_id=WP_000046747.1;transl_table=11 NC_008258.1 RefSeq gene 4563420 4565357 . + . ID=gene4847;Name=SFV_RS24350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24350;old_locus_tag=SFV_4426 NC_008258.1 Protein Homology CDS 4563420 4565357 . + 0 ID=cds4728;Parent=gene4847;Dbxref=Genbank:WP_000409459.1;Name=WP_000409459.1;Note=catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan;gbkey=CDS;product=murein transglycosylase;protein_id=WP_000409459.1;transl_table=11 NC_008258.1 RefSeq gene 4565447 4565773 . + . ID=gene4848;Name=SFV_RS24355;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24355;old_locus_tag=SFV_4427 NC_008258.1 Protein Homology CDS 4565447 4565773 . + 0 ID=cds4729;Parent=gene4848;Dbxref=Genbank:WP_000068679.1;Name=WP_000068679.1;Note=When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription;gbkey=CDS;product=Trp operon repressor;protein_id=WP_000068679.1;transl_table=11 NC_008258.1 RefSeq gene 4565858 4566378 . - . ID=gene4849;Name=yjjX;gbkey=Gene;gene=yjjX;gene_biotype=pseudogene;locus_tag=SFV_RS24360;old_locus_tag=SFV_4428;pseudo=true NC_008258.1 Protein Homology CDS 4565858 4566378 . - 0 ID=cds4730;Parent=gene4849;Note=pyrophosphatase%3B has activity against dUTP and dITP%3B the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226%3B in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms%3B in Escherichia coli overexpression of this gene leads to resistance to an HMP analog;exception=annotated by transcript or proteomic data;gbkey=CDS;gene=yjjX;product=inositol monophosphatase;pseudo=true;transl_table=11 NC_008258.1 RefSeq gene 4566430 4567077 . + . ID=gene4850;Name=SFV_RS24365;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24365;old_locus_tag=SFV_4429 NC_008258.1 Protein Homology CDS 4566430 4567077 . + 0 ID=cds4731;Parent=gene4850;Dbxref=Genbank:WP_000942344.1;Name=WP_000942344.1;Note=catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate;gbkey=CDS;product=phosphoglycerate mutase GpmB;protein_id=WP_000942344.1;transl_table=11 NC_008258.1 RefSeq gene 4567074 4567943 . - . ID=gene4851;Name=SFV_RS24370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24370;old_locus_tag=SFV_4430 NC_008258.1 Protein Homology CDS 4567074 4567943 . - 0 ID=cds4732;Parent=gene4851;Dbxref=Genbank:WP_000371666.1;Name=WP_000371666.1;Note=AraC family%3B binds to the right arm of the replication origin oriC;gbkey=CDS;product=right origin-binding protein;protein_id=WP_000371666.1;transl_table=11 NC_008258.1 RefSeq gene 4568154 4568627 . + . ID=gene4852;Name=SFV_RS24375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24375;old_locus_tag=SFV_4431 NC_008258.1 Protein Homology CDS 4568154 4568627 . + 0 ID=cds4733;Parent=gene4852;Dbxref=Genbank:WP_000875487.1;Name=WP_000875487.1;gbkey=CDS;product=protein CreA;protein_id=WP_000875487.1;transl_table=11 NC_008258.1 RefSeq gene 4568640 4569329 . + . ID=gene4853;Name=SFV_RS24380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24380;old_locus_tag=SFV_4432 NC_008258.1 Protein Homology CDS 4568640 4569329 . + 0 ID=cds4734;Parent=gene4853;Dbxref=Genbank:WP_001188678.1;Name=WP_001188678.1;Note=response regulator in two-component regulatory system with CreC%3B CreB protein is phosphorylated by sensor protein phospho-CreC%3B involved in catabolic regulation;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001188678.1;transl_table=11 NC_008258.1 RefSeq gene 4569329 4570753 . + . ID=gene4854;Name=SFV_RS24385;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24385;old_locus_tag=SFV_4433 NC_008258.1 Protein Homology CDS 4569329 4570753 . + 0 ID=cds4735;Parent=gene4854;Dbxref=Genbank:WP_001219564.1;Name=WP_001219564.1;Note=part of a two-component regulatory system with CreB or PhoB%3B involved in catabolic regulation;gbkey=CDS;product=two-component system sensor histidine kinase;protein_id=WP_001219564.1;transl_table=11 NC_008258.1 RefSeq gene 4570811 4572163 . + . ID=gene4855;Name=SFV_RS24390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24390;old_locus_tag=SFV_4434 NC_008258.1 Protein Homology CDS 4570811 4572163 . + 0 ID=cds4736;Parent=gene4855;Dbxref=Genbank:WP_000920341.1;Name=WP_000920341.1;gbkey=CDS;product=membrane protein;protein_id=WP_000920341.1;transl_table=11 NC_008258.1 RefSeq gene 4572222 4572938 . - . ID=gene4856;Name=SFV_RS24395;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24395;old_locus_tag=SFV_4435 NC_008258.1 Protein Homology CDS 4572222 4572938 . - 0 ID=cds4737;Parent=gene4856;Dbxref=Genbank:WP_001194358.1;Name=WP_001194358.1;gbkey=CDS;product=two-component system response regulator;protein_id=WP_001194358.1;transl_table=11 NC_008258.1 RefSeq gene 4573034 4573174 . + . ID=gene4857;Name=SFV_RS24400;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24400 NC_008258.1 Protein Homology CDS 4573034 4573174 . + 0 ID=cds4738;Parent=gene4857;Dbxref=Genbank:WP_001303782.1;Name=WP_001303782.1;gbkey=CDS;product=hypothetical protein;protein_id=WP_001303782.1;transl_table=11 NC_008258.1 RefSeq gene 4573574 4574260 . + . ID=gene4858;Name=SFV_RS24405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=SFV_RS24405;old_locus_tag=SFV_4436 NC_008258.1 Protein Homology CDS 4573574 4574260 . + 0 ID=cds4739;Parent=gene4858;Dbxref=Genbank:WP_001223172.1;Name=WP_001223172.1;Note=member of the SPOUT superfamily of methyltransferases;gbkey=CDS;product=RNA methyltransferase;protein_id=WP_001223172.1;transl_table=11 ###