locus-tag class description SMB554_RS00005 PF03618 Kinase/pyrophosphorylase SMB554_RS00010 PF02545 Maf-like protein SMB554_RS00015 PF08501 Shikimate dehydrogenase substrate binding domain SMB554_RS00015 PF01488 Shikimate / quinate 5-dehydrogenase SMB554_RS00015 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SMB554_RS00020 PF01121 Dephospho-CoA kinase SMB554_RS00025 PF00929 Exonuclease SMB554_RS00030 PF02556 Preprotein translocase subunit SecB SMB554_RS00035 PF04186 FxsA cytoplasmic membrane protein SMB554_RS00060 PF00204 DNA gyrase B SMB554_RS00060 PF00986 DNA gyrase B subunit, carboxyl terminus SMB554_RS00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS00060 PF01751 Toprim domain SMB554_RS00065 PF00881 Nitroreductase family SMB554_RS00070 PF00171 Aldehyde dehydrogenase family SMB554_RS00075 PF03328 HpcH/HpaI aldolase/citrate lyase family SMB554_RS00080 PF07729 FCD domain SMB554_RS00080 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS00085 PF08666 SAF domain SMB554_RS00085 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SMB554_RS00090 PF00248 Aldo/keto reductase family SMB554_RS00100 PF00005 ABC transporter SMB554_RS00105 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS00110 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS00110 PF00107 Zinc-binding dehydrogenase SMB554_RS00130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SMB554_RS00135 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS00140 PF00290 Tryptophan synthase alpha chain SMB554_RS00145 PF01039 Carboxyl transferase domain SMB554_RS00150 PF08245 Mur ligase middle domain SMB554_RS00150 PF02875 Mur ligase family, glutamate ligase domain SMB554_RS00155 PF01609 Transposase DDE domain SMB554_RS00160 PF00085 Thioredoxin SMB554_RS00165 PF12705 PD-(D/E)XK nuclease superfamily SMB554_RS00165 PF00580 UvrD/REP helicase N-terminal domain SMB554_RS00165 PF13361 UvrD-like helicase C-terminal domain SMB554_RS00170 PF12705 PD-(D/E)XK nuclease superfamily SMB554_RS00175 PF12804 MobA-like NTP transferase domain SMB554_RS00180 PF01636 Phosphotransferase enzyme family SMB554_RS00185 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS00190 PF05221 S-adenosyl-L-homocysteine hydrolase SMB554_RS00190 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain SMB554_RS00195 PF00381 PTS HPr component phosphorylation site SMB554_RS00200 PF03830 PTS system sorbose subfamily IIB component SMB554_RS00200 PF03610 PTS system fructose IIA component SMB554_RS00215 PF00672 HAMP domain SMB554_RS00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS00215 PF13756 Stimulus-sensing domain SMB554_RS00215 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS00215 PF13755 Sensor N-terminal transmembrane domain SMB554_RS00220 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS00220 PF00072 Response regulator receiver domain SMB554_RS00225 PF01293 Phosphoenolpyruvate carboxykinase SMB554_RS00230 PF00472 RF-1 domain SMB554_RS00235 PF04972 BON domain SMB554_RS00235 PF01476 LysM domain SMB554_RS00240 PF13532 2OG-Fe(II) oxygenase superfamily SMB554_RS00245 PF00485 Phosphoribulokinase / Uridine kinase family SMB554_RS00250 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SMB554_RS00255 PF00977 Histidine biosynthesis protein SMB554_RS00260 PF00977 Histidine biosynthesis protein SMB554_RS00265 PF00117 Glutamine amidotransferase class-I SMB554_RS00275 PF00475 Imidazoleglycerol-phosphate dehydratase SMB554_RS00280 PF00227 Proteasome subunit SMB554_RS00290 PF10431 C-terminal, D2-small domain, of ClpB protein SMB554_RS00290 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS00290 PF07724 AAA domain (Cdc48 subfamily) SMB554_RS00300 PF00067 Cytochrome P450 SMB554_RS00305 PF01968 Hydantoinase/oxoprolinase SMB554_RS00305 PF05378 Hydantoinase/oxoprolinase N-terminal region SMB554_RS00310 PF01274 Malate synthase SMB554_RS00325 PF00072 Response regulator receiver domain SMB554_RS00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS00330 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS00335 PF04408 Helicase associated domain (HA2) SMB554_RS00335 PF00270 DEAD/DEAH box helicase SMB554_RS00335 PF00271 Helicase conserved C-terminal domain SMB554_RS00335 PF08482 ATP-dependent helicase C-terminal SMB554_RS00340 PF00005 ABC transporter SMB554_RS00345 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS00350 PF13416 Bacterial extracellular solute-binding protein SMB554_RS00410 PF01812 5-formyltetrahydrofolate cyclo-ligase family SMB554_RS00415 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS00420 PF03466 LysR substrate binding domain SMB554_RS00420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS00440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SMB554_RS00440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SMB554_RS00450 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS00450 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS00450 PF17806 Sarcosine oxidase A3 domain SMB554_RS00450 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS00455 PF04267 Sarcosine oxidase, delta subunit family SMB554_RS00460 PF01266 FAD dependent oxidoreductase SMB554_RS00465 PF12833 Helix-turn-helix domain SMB554_RS00465 PF01965 DJ-1/PfpI family SMB554_RS00475 PF01493 GXGXG motif SMB554_RS00480 PF01645 Conserved region in glutamate synthase SMB554_RS00485 PF00120 Glutamine synthetase, catalytic domain SMB554_RS00500 PF13520 Amino acid permease SMB554_RS00525 PF00551 Formyl transferase SMB554_RS00530 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS00530 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS00540 PF00175 Oxidoreductase NAD-binding domain SMB554_RS00540 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS00540 PF00970 Oxidoreductase FAD-binding domain SMB554_RS00555 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS00555 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS00565 PF09364 XFP N-terminal domain SMB554_RS00565 PF09363 XFP C-terminal domain SMB554_RS00565 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase SMB554_RS00570 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS00575 PF00920 Dehydratase family SMB554_RS00580 PF07729 FCD domain SMB554_RS00580 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS00595 PF17912 MalK OB fold domain SMB554_RS00595 PF00005 ABC transporter SMB554_RS00600 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS00600 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS00605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS00605 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS00610 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS00615 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS00620 PF13416 Bacterial extracellular solute-binding protein SMB554_RS00625 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS00625 PF17938 Tetracyclin repressor-like, C-terminal domain SMB554_RS00630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS00630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS00650 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS00650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS00655 PF00403 Heavy-metal-associated domain SMB554_RS00670 PF13808 DDE_Tnp_1-associated SMB554_RS00670 PF01609 Transposase DDE domain SMB554_RS00675 PF00005 ABC transporter SMB554_RS00680 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS00685 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS00690 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SMB554_RS00695 PF01048 Phosphorylase superfamily SMB554_RS00700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SMB554_RS00700 PF00591 Glycosyl transferase family, a/b domain SMB554_RS00700 PF02885 Glycosyl transferase family, helical bundle domain SMB554_RS00710 PF00962 Adenosine/AMP deaminase SMB554_RS00715 PF01676 Metalloenzyme superfamily SMB554_RS00750 PF04972 BON domain SMB554_RS00750 PF13629 Pilus formation protein N terminal region SMB554_RS00750 PF00263 Bacterial type II and III secretion system protein SMB554_RS00765 PF00437 Type II/IV secretion system protein SMB554_RS00780 PF01609 Transposase DDE domain SMB554_RS00790 PF02789 Cytosol aminopeptidase family, N-terminal domain SMB554_RS00790 PF00883 Cytosol aminopeptidase family, catalytic domain SMB554_RS00800 PF00877 NlpC/P60 family SMB554_RS00805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS00810 PF00005 ABC transporter SMB554_RS00810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS00815 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS00815 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS00820 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS00825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS00830 PF03411 Penicillin-insensitive murein endopeptidase SMB554_RS00835 PF02142 MGS-like domain SMB554_RS00840 PF02685 Glucokinase SMB554_RS00845 PF00664 ABC transporter transmembrane region SMB554_RS00845 PF00005 ABC transporter SMB554_RS00850 PF05173 Dihydrodipicolinate reductase, C-terminus SMB554_RS00850 PF01113 Dihydrodipicolinate reductase, N-terminus SMB554_RS00855 PF00300 Histidine phosphatase superfamily (branch 1) SMB554_RS00860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMB554_RS00860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMB554_RS00870 PF10576 Iron-sulfur binding domain of endonuclease III SMB554_RS00870 PF00730 HhH-GPD superfamily base excision DNA repair protein SMB554_RS00870 PF00633 Helix-hairpin-helix motif SMB554_RS00875 PF08361 MAATS-type transcriptional repressor, C-terminal region SMB554_RS00875 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS00885 PF00294 pfkB family carbohydrate kinase SMB554_RS00900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS00900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS00905 PF00476 DNA polymerase family A SMB554_RS00905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SMB554_RS00905 PF01367 5'-3' exonuclease, C-terminal SAM fold SMB554_RS00905 PF01612 3'-5' exonuclease SMB554_RS00915 PF07687 Peptidase dimerisation domain SMB554_RS00915 PF01546 Peptidase family M20/M25/M40 SMB554_RS00935 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS00935 PF00912 Transglycosylase SMB554_RS00940 PF00012 Hsp70 protein SMB554_RS00945 PF01556 DnaJ C terminal domain SMB554_RS00945 PF00226 DnaJ domain SMB554_RS00945 PF00684 DnaJ central domain SMB554_RS00960 PF01384 Phosphate transporter family SMB554_RS00965 PF01865 Protein of unknown function DUF47 SMB554_RS00970 PF02463 RecF/RecN/SMC N terminal domain SMB554_RS00975 PF00581 Rhodanese-like domain SMB554_RS00975 PF00899 ThiF family SMB554_RS00985 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS00985 PF08361 MAATS-type transcriptional repressor, C-terminal region SMB554_RS00990 PF00873 AcrB/AcrD/AcrF family SMB554_RS00995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS00995 PF00529 HlyD membrane-fusion protein of T1SS SMB554_RS01000 PF00005 ABC transporter SMB554_RS01000 PF08402 TOBE domain SMB554_RS01005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS01005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS01010 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS01015 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS01025 PF13580 SIS domain SMB554_RS01030 PF01869 BadF/BadG/BcrA/BcrD ATPase family SMB554_RS01035 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS01035 PF07702 UTRA domain SMB554_RS01040 PF01380 SIS domain SMB554_RS01045 PF01979 Amidohydrolase family SMB554_RS01055 PF03932 CutC family SMB554_RS01060 PF00480 ROK family SMB554_RS01065 PF01425 Amidase SMB554_RS01075 PF04102 SlyX SMB554_RS01080 PF02608 ABC transporter substrate-binding protein PnrA-like SMB554_RS01085 PF01625 Peptide methionine sulfoxide reductase SMB554_RS01110 PF02311 AraC-like ligand binding domain SMB554_RS01110 PF12833 Helix-turn-helix domain SMB554_RS01115 PF07690 Major Facilitator Superfamily SMB554_RS01120 PF00593 TonB dependent receptor SMB554_RS01120 PF07715 TonB-dependent Receptor Plug Domain SMB554_RS01125 PF01494 FAD binding domain SMB554_RS01130 PF07690 Major Facilitator Superfamily SMB554_RS01135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS01135 PF03466 LysR substrate binding domain SMB554_RS01150 PF01063 Amino-transferase class IV SMB554_RS01155 PF00034 Cytochrome c SMB554_RS01160 PF02348 Cytidylyltransferase SMB554_RS01165 PF01817 Chorismate mutase type II SMB554_RS01165 PF00800 Prephenate dehydratase SMB554_RS01180 PF13280 WYL domain SMB554_RS01180 PF08279 HTH domain SMB554_RS01185 PF00293 NUDIX domain SMB554_RS01185 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain SMB554_RS01185 PF09297 NADH pyrophosphatase zinc ribbon domain SMB554_RS01200 PF12169 DNA polymerase III subunits gamma and tau domain III SMB554_RS01200 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SMB554_RS01200 PF12170 DNA polymerase III tau subunit V interacting with alpha SMB554_RS01205 PF02575 YbaB/EbfC DNA-binding family SMB554_RS01210 PF01810 LysE type translocator SMB554_RS01215 PF02132 RecR protein SMB554_RS01215 PF13662 Toprim domain SMB554_RS01220 PF13406 Transglycosylase SLT domain SMB554_RS01225 PF05977 Transmembrane secretion effector SMB554_RS01230 PF02576 RimP N-terminal domain SMB554_RS01230 PF17384 RimP C-terminal SH3 domain SMB554_RS01235 PF13184 NusA-like KH domain SMB554_RS01235 PF08529 NusA N-terminal domain SMB554_RS01235 PF00575 S1 RNA binding domain SMB554_RS01245 PF00009 Elongation factor Tu GTP binding domain SMB554_RS01245 PF04760 Translation initiation factor IF-2, N-terminal region SMB554_RS01245 PF08364 Bacterial translation initiation factor IF-2 associated region SMB554_RS01245 PF11987 Translation-initiation factor 2 SMB554_RS01250 PF02033 Ribosome-binding factor A SMB554_RS01255 PF01509 TruB family pseudouridylate synthase (N terminal domain) SMB554_RS01255 PF16198 tRNA pseudouridylate synthase B C-terminal domain SMB554_RS01255 PF09157 Pseudouridine synthase II TruB, C-terminal SMB554_RS01260 PF08447 PAS fold SMB554_RS01260 PF07536 HWE histidine kinase SMB554_RS01260 PF13426 PAS domain SMB554_RS01265 PF00312 Ribosomal protein S15 SMB554_RS01270 PF03725 3' exoribonuclease family, domain 2 SMB554_RS01270 PF00013 KH domain SMB554_RS01270 PF01138 3' exoribonuclease family, domain 1 SMB554_RS01270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SMB554_RS01270 PF00575 S1 RNA binding domain SMB554_RS01275 PF08468 Methyltransferase small domain N-terminal SMB554_RS01275 PF05175 Methyltransferase small domain SMB554_RS01285 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS01285 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS01290 PF07977 FabA-like domain SMB554_RS01300 PF03458 UPF0126 domain SMB554_RS01320 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMB554_RS01325 PF02224 Cytidylate kinase SMB554_RS01330 PF00575 S1 RNA binding domain SMB554_RS01360 PF00672 HAMP domain SMB554_RS01360 PF02743 Cache domain SMB554_RS01360 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS01365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS01365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS01375 PF01612 3'-5' exonuclease SMB554_RS01375 PF00570 HRDC domain SMB554_RS01380 PF00665 Integrase core domain SMB554_RS01395 PF01541 GIY-YIG catalytic domain SMB554_RS01415 PF01272 Transcription elongation factor, GreA/GreB, C-term SMB554_RS01415 PF14760 Rnk N-terminus SMB554_RS01425 PF06421 GTP-binding protein LepA C-terminus SMB554_RS01425 PF03144 Elongation factor Tu domain 2 SMB554_RS01425 PF00009 Elongation factor Tu GTP binding domain SMB554_RS01425 PF00679 Elongation factor G C-terminus SMB554_RS01430 PF07690 Major Facilitator Superfamily SMB554_RS01445 PF06055 Exopolysaccharide synthesis, ExoD SMB554_RS01450 PF13488 Glycine zipper SMB554_RS01450 PF00691 OmpA family SMB554_RS01455 PF12544 Lysine-2,3-aminomutase SMB554_RS01455 PF04055 Radical SAM superfamily SMB554_RS01460 PF00152 tRNA synthetases class II (D, K and N) SMB554_RS01465 PF01132 Elongation factor P (EF-P) OB domain SMB554_RS01465 PF08207 Elongation factor P (EF-P) KOW-like domain SMB554_RS01465 PF09285 Elongation factor P, C-terminal SMB554_RS01490 PF05198 Translation initiation factor IF-3, N-terminal domain SMB554_RS01490 PF00707 Translation initiation factor IF-3, C-terminal domain SMB554_RS01495 PF01632 Ribosomal protein L35 SMB554_RS01500 PF00453 Ribosomal protein L20 SMB554_RS01505 PF01409 tRNA synthetases class II core domain (F) SMB554_RS01505 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SMB554_RS01510 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SMB554_RS01510 PF01588 Putative tRNA binding domain SMB554_RS01510 PF03147 Ferredoxin-fold anticodon binding domain SMB554_RS01510 PF03484 tRNA synthetase B5 domain SMB554_RS01510 PF03483 B3/4 domain SMB554_RS01520 PF00248 Aldo/keto reductase family SMB554_RS01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS01525 PF03466 LysR substrate binding domain SMB554_RS01545 PF00248 Aldo/keto reductase family SMB554_RS01550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS01550 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS01565 PF13742 OB-fold nucleic acid binding domain SMB554_RS01565 PF02601 Exonuclease VII, large subunit SMB554_RS01570 PF02525 Flavodoxin-like fold SMB554_RS01575 PF01047 MarR family SMB554_RS01580 PF00892 EamA-like transporter family SMB554_RS01585 PF02073 Thermophilic metalloprotease (M29) SMB554_RS01590 PF13417 Glutathione S-transferase, N-terminal domain SMB554_RS01590 PF14497 Glutathione S-transferase, C-terminal domain SMB554_RS01600 PF04073 Aminoacyl-tRNA editing domain SMB554_RS01605 PF03960 ArsC family SMB554_RS01615 PF00155 Aminotransferase class I and II SMB554_RS01640 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SMB554_RS01650 PF00117 Glutamine amidotransferase class-I SMB554_RS01650 PF02540 NAD synthase SMB554_RS01650 PF00958 GMP synthase C terminal domain SMB554_RS01665 PF00583 Acetyltransferase (GNAT) family SMB554_RS01675 PF01544 CorA-like Mg2+ transporter protein SMB554_RS01695 PF01029 NusB family SMB554_RS01695 PF01189 16S rRNA methyltransferase RsmB/F SMB554_RS01700 PF03330 Lytic transglycolase SMB554_RS01710 PF08331 Domain of unknown function (DUF1730) SMB554_RS01715 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS01715 PF13417 Glutathione S-transferase, N-terminal domain SMB554_RS01720 PF02673 Bacitracin resistance protein BacA SMB554_RS01730 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS01740 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SMB554_RS01750 PF13649 Methyltransferase domain SMB554_RS01755 PF00712 DNA polymerase III beta subunit, N-terminal domain SMB554_RS01755 PF02767 DNA polymerase III beta subunit, central domain SMB554_RS01755 PF02768 DNA polymerase III beta subunit, C-terminal domain SMB554_RS01760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS01765 PF02021 Uncharacterised protein family UPF0102 SMB554_RS01770 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SMB554_RS01770 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SMB554_RS01775 PF13335 Magnesium chelatase, subunit ChlI C-terminal SMB554_RS01775 PF01078 Magnesium chelatase, subunit ChlI SMB554_RS01780 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS01785 PF01810 LysE type translocator SMB554_RS01790 PF01810 LysE type translocator SMB554_RS01795 PF00892 EamA-like transporter family SMB554_RS01800 PF01037 Lrp/AsnC ligand binding domain SMB554_RS01805 PF00692 dUTPase SMB554_RS01810 PF03144 Elongation factor Tu domain 2 SMB554_RS01810 PF16658 Class II release factor RF3, C-terminal domain SMB554_RS01810 PF00009 Elongation factor Tu GTP binding domain SMB554_RS01820 PF12833 Helix-turn-helix domain SMB554_RS01825 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS01835 PF04962 KduI/IolB family SMB554_RS01840 PF01261 Xylose isomerase-like TIM barrel SMB554_RS01845 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS01845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS01845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS01850 PF00294 pfkB family carbohydrate kinase SMB554_RS01865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS01865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS01875 PF04127 DNA / pantothenate metabolism flavoprotein SMB554_RS01875 PF02441 Flavoprotein SMB554_RS01905 PF03109 ABC1 family SMB554_RS01910 PF01209 ubiE/COQ5 methyltransferase family SMB554_RS01915 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SMB554_RS01915 PF06827 Zinc finger found in FPG and IleRS SMB554_RS01915 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SMB554_RS01920 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS01925 PF01649 Ribosomal protein S20 SMB554_RS01935 PF00308 Bacterial dnaA protein SMB554_RS01935 PF11638 DnaA N-terminal domain SMB554_RS01935 PF08299 Bacterial dnaA protein helix-turn-helix SMB554_RS01940 PF03795 YCII-related domain SMB554_RS01945 PF08281 Sigma-70, region 4 SMB554_RS01945 PF04542 Sigma-70 region 2 SMB554_RS01960 PF06969 HemN C-terminal domain SMB554_RS01960 PF04055 Radical SAM superfamily SMB554_RS01965 PF01725 Ham1 family SMB554_RS01975 PF03725 3' exoribonuclease family, domain 2 SMB554_RS01975 PF01138 3' exoribonuclease family, domain 1 SMB554_RS01980 PF01628 HrcA protein C terminal domain SMB554_RS01985 PF01025 GrpE SMB554_RS01995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SMB554_RS02000 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SMB554_RS02000 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus SMB554_RS02005 PF04552 Sigma-54, DNA binding domain SMB554_RS02005 PF04963 Sigma-54 factor, core binding domain SMB554_RS02005 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMB554_RS02010 PF00005 ABC transporter SMB554_RS02015 PF03968 OstA-like protein SMB554_RS02025 PF01343 Peptidase family S49 SMB554_RS02030 PF00216 Bacterial DNA-binding protein SMB554_RS02045 PF02926 THUMP domain SMB554_RS02045 PF01170 Putative RNA methylase family UPF0020 SMB554_RS02045 PF10672 S-adenosylmethionine-dependent methyltransferase SMB554_RS02050 PF00588 SpoU rRNA Methylase family SMB554_RS02050 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMB554_RS02055 PF01252 Signal peptidase (SPase) II SMB554_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS02060 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS02060 PF00072 Response regulator receiver domain SMB554_RS02060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMB554_RS02060 PF00672 HAMP domain SMB554_RS02060 PF01627 Hpt domain SMB554_RS02070 PF00390 Malic enzyme, N-terminal domain SMB554_RS02070 PF03949 Malic enzyme, NAD binding domain SMB554_RS02070 PF01515 Phosphate acetyl/butaryl transferase SMB554_RS02075 PF00488 MutS domain V SMB554_RS02075 PF05192 MutS domain III SMB554_RS02075 PF05188 MutS domain II SMB554_RS02075 PF01624 MutS domain I SMB554_RS02075 PF05190 MutS family domain IV SMB554_RS02080 PF01842 ACT domain SMB554_RS02080 PF08335 GlnD PII-uridylyltransferase SMB554_RS02080 PF01966 HD domain SMB554_RS02080 PF01909 Nucleotidyltransferase domain SMB554_RS02085 PF03023 Lipid II flippase MurJ SMB554_RS02095 PF00579 tRNA synthetases class I (W and Y) SMB554_RS02105 PF01106 NifU-like domain SMB554_RS02110 PF00814 Glycoprotease family SMB554_RS02120 PF01553 Acyltransferase SMB554_RS02125 PF00919 Uncharacterized protein family UPF0004 SMB554_RS02125 PF01938 TRAM domain SMB554_RS02125 PF04055 Radical SAM superfamily SMB554_RS02130 PF02562 PhoH-like protein SMB554_RS02135 PF02130 Uncharacterized protein family UPF0054 SMB554_RS02140 PF03471 Transporter associated domain SMB554_RS02140 PF00571 CBS domain SMB554_RS02145 PF00795 Carbon-nitrogen hydrolase SMB554_RS02150 PF01381 Helix-turn-helix SMB554_RS02155 PF00438 S-adenosylmethionine synthetase, N-terminal domain SMB554_RS02155 PF02772 S-adenosylmethionine synthetase, central domain SMB554_RS02155 PF02773 S-adenosylmethionine synthetase, C-terminal domain SMB554_RS02160 PF02390 Putative methyltransferase SMB554_RS02165 PF00872 Transposase, Mutator family SMB554_RS02175 PF00011 Hsp20/alpha crystallin family SMB554_RS02180 PF01156 Inosine-uridine preferring nucleoside hydrolase SMB554_RS02185 PF00672 HAMP domain SMB554_RS02185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS02190 PF00294 pfkB family carbohydrate kinase SMB554_RS02200 PF01327 Polypeptide deformylase SMB554_RS02205 PF02911 Formyl transferase, C-terminal domain SMB554_RS02205 PF00551 Formyl transferase SMB554_RS02210 PF01416 tRNA pseudouridine synthase SMB554_RS02225 PF07687 Peptidase dimerisation domain SMB554_RS02225 PF01546 Peptidase family M20/M25/M40 SMB554_RS02230 PF00873 AcrB/AcrD/AcrF family SMB554_RS02235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS02240 PF07859 alpha/beta hydrolase fold SMB554_RS02245 PF03466 LysR substrate binding domain SMB554_RS02245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS02255 PF03880 DbpA RNA binding domain SMB554_RS02255 PF00270 DEAD/DEAH box helicase SMB554_RS02255 PF00271 Helicase conserved C-terminal domain SMB554_RS02265 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SMB554_RS02265 PF14602 Hexapeptide repeat of succinyl-transferase SMB554_RS02265 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS02285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMB554_RS02285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMB554_RS02285 PF02805 Metal binding domain of Ada SMB554_RS02285 PF12833 Helix-turn-helix domain SMB554_RS02310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS02310 PF01348 Type II intron maturase SMB554_RS02320 PF00696 Amino acid kinase family SMB554_RS02330 PF01641 SelR domain SMB554_RS02340 PF01926 50S ribosome-binding GTPase SMB554_RS02350 PF14849 YidC periplasmic domain SMB554_RS02350 PF02096 60Kd inner membrane protein SMB554_RS02355 PF00825 Ribonuclease P SMB554_RS02360 PF00468 Ribosomal protein L34 SMB554_RS02365 PF02203 Tar ligand binding domain homologue SMB554_RS02365 PF00672 HAMP domain SMB554_RS02365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS02375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS02375 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS02375 PF00403 Heavy-metal-associated domain SMB554_RS02380 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS02380 PF13426 PAS domain SMB554_RS02380 PF00672 HAMP domain SMB554_RS02380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS02395 PF02909 Tetracyclin repressor-like, C-terminal domain SMB554_RS02395 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS02410 PF01070 FMN-dependent dehydrogenase SMB554_RS02435 PF00872 Transposase, Mutator family SMB554_RS02440 PF05658 Head domain of trimeric autotransporter adhesin SMB554_RS02440 PF03895 YadA-like membrane anchor domain SMB554_RS02440 PF13018 Extended Signal Peptide of Type V secretion system SMB554_RS02440 PF05662 Coiled stalk of trimeric autotransporter adhesin SMB554_RS02445 PF05662 Coiled stalk of trimeric autotransporter adhesin SMB554_RS02445 PF05658 Head domain of trimeric autotransporter adhesin SMB554_RS02445 PF03895 YadA-like membrane anchor domain SMB554_RS02475 PF00248 Aldo/keto reductase family SMB554_RS02480 PF01205 Uncharacterized protein family UPF0029 SMB554_RS02485 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SMB554_RS02485 PF00171 Aldehyde dehydrogenase family SMB554_RS02485 PF14850 DNA-binding domain of Proline dehydrogenase SMB554_RS02485 PF01619 Proline dehydrogenase SMB554_RS02515 PF02743 Cache domain SMB554_RS02515 PF00672 HAMP domain SMB554_RS02515 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS02525 PF07681 DoxX SMB554_RS02540 PF13407 Periplasmic binding protein domain SMB554_RS02545 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS02550 PF00005 ABC transporter SMB554_RS02555 PF00485 Phosphoribulokinase / Uridine kinase family SMB554_RS02560 PF01979 Amidohydrolase family SMB554_RS02565 PF00156 Phosphoribosyl transferase domain SMB554_RS02570 PF00294 pfkB family carbohydrate kinase SMB554_RS02575 PF00342 Phosphoglucose isomerase SMB554_RS02580 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS02580 PF00501 AMP-binding enzyme SMB554_RS02585 PF07690 Major Facilitator Superfamily SMB554_RS02590 PF01594 AI-2E family transporter SMB554_RS02630 PF03976 Polyphosphate kinase 2 (PPK2) SMB554_RS02635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS02635 PF16736 Single Cache-like SMB554_RS02635 PF00989 PAS fold SMB554_RS02635 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS02645 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS02650 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS02655 PF00005 ABC transporter SMB554_RS02660 PF01895 PhoU domain SMB554_RS02665 PF00072 Response regulator receiver domain SMB554_RS02665 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS02675 PF00202 Aminotransferase class-III SMB554_RS02680 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMB554_RS02680 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMB554_RS02685 PF01430 Hsp33 protein SMB554_RS02690 PF04379 ApaG domain SMB554_RS02695 PF01066 CDP-alcohol phosphatidyltransferase SMB554_RS02700 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS02705 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) SMB554_RS02715 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS02735 PF00717 Peptidase S24-like SMB554_RS02735 PF01726 LexA DNA binding domain SMB554_RS02740 PF01699 Sodium/calcium exchanger protein SMB554_RS02745 PF01638 HxlR-like helix-turn-helix SMB554_RS02755 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMB554_RS02755 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMB554_RS02755 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS02760 PF02803 Thiolase, C-terminal domain SMB554_RS02760 PF00108 Thiolase, N-terminal domain SMB554_RS02765 PF12806 Acetyl-CoA dehydrogenase C-terminal like SMB554_RS02765 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS02765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS02765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS02775 PF01925 Sulfite exporter TauE/SafE SMB554_RS02800 PF00271 Helicase conserved C-terminal domain SMB554_RS02800 PF08494 DEAD/H associated SMB554_RS02800 PF00270 DEAD/DEAH box helicase SMB554_RS02805 PF02082 Transcriptional regulator SMB554_RS02810 PF02627 Carboxymuconolactone decarboxylase family SMB554_RS02835 PF01554 MatE SMB554_RS02840 PF01180 Dihydroorotate dehydrogenase SMB554_RS02855 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS02855 PF00072 Response regulator receiver domain SMB554_RS02860 PF00672 HAMP domain SMB554_RS02860 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS02860 PF00072 Response regulator receiver domain SMB554_RS02860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMB554_RS02860 PF01627 Hpt domain SMB554_RS02860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS02865 PF01741 Large-conductance mechanosensitive channel, MscL SMB554_RS02870 PF00155 Aminotransferase class I and II SMB554_RS02875 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS02885 PF02322 Cytochrome bd terminal oxidase subunit II SMB554_RS02890 PF01654 Cytochrome bd terminal oxidase subunit I SMB554_RS02895 PF01546 Peptidase family M20/M25/M40 SMB554_RS02895 PF07687 Peptidase dimerisation domain SMB554_RS02900 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS02905 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS02910 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS02915 PF00005 ABC transporter SMB554_RS02920 PF13977 BetI-type transcriptional repressor, C-terminal SMB554_RS02920 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS02925 PF00155 Aminotransferase class I and II SMB554_RS02930 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS02930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS02930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS02940 PF07549 SecD/SecF GG Motif SMB554_RS02940 PF02355 Protein export membrane protein SMB554_RS02950 PF02082 Transcriptional regulator SMB554_RS02955 PF00571 CBS domain SMB554_RS02955 PF01380 SIS domain SMB554_RS02960 PF05159 Capsule polysaccharide biosynthesis protein SMB554_RS02965 PF00884 Sulfatase SMB554_RS02975 PF00155 Aminotransferase class I and II SMB554_RS02980 PF14765 Polyketide synthase dehydratase SMB554_RS02980 PF08990 Erythronolide synthase docking SMB554_RS02980 PF16197 Ketoacyl-synthetase C-terminal extension SMB554_RS02980 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS02980 PF00550 Phosphopantetheine attachment site SMB554_RS02980 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS02980 PF00698 Acyl transferase domain SMB554_RS02980 PF08659 KR domain SMB554_RS02980 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS02990 PF00857 Isochorismatase family SMB554_RS02995 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SMB554_RS02995 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SMB554_RS03025 PF07732 Multicopper oxidase SMB554_RS03025 PF07731 Multicopper oxidase SMB554_RS03025 PF00394 Multicopper oxidase SMB554_RS03040 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS03040 PF00072 Response regulator receiver domain SMB554_RS03055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SMB554_RS03065 PF00815 Histidinol dehydrogenase SMB554_RS03070 PF06793 Uncharacterised protein family (UPF0262) SMB554_RS03080 PF01176 Translation initiation factor 1A / IF-1 SMB554_RS03085 PF02545 Maf-like protein SMB554_RS03090 PF03884 DNA gyrase inhibitor YacG SMB554_RS03140 PF04073 Aminoacyl-tRNA editing domain SMB554_RS03155 PF01261 Xylose isomerase-like TIM barrel SMB554_RS03160 PF00596 Class II Aldolase and Adducin N-terminal domain SMB554_RS03165 PF08220 DeoR-like helix-turn-helix domain SMB554_RS03165 PF00455 DeoR C terminal sensor domain SMB554_RS03170 PF13407 Periplasmic binding protein domain SMB554_RS03175 PF00005 ABC transporter SMB554_RS03180 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS03185 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS03190 PF05336 L-rhamnose mutarotase SMB554_RS03200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS03210 PF00072 Response regulator receiver domain SMB554_RS03215 PF01627 Hpt domain SMB554_RS03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS03215 PF02895 Signal transducing histidine kinase, homodimeric domain SMB554_RS03215 PF01584 CheW-like domain SMB554_RS03220 PF01584 CheW-like domain SMB554_RS03225 PF03705 CheR methyltransferase, all-alpha domain SMB554_RS03225 PF01739 CheR methyltransferase, SAM binding domain SMB554_RS03230 PF01339 CheB methylesterase SMB554_RS03230 PF00072 Response regulator receiver domain SMB554_RS03235 PF00072 Response regulator receiver domain SMB554_RS03240 PF03975 CheD chemotactic sensory transduction SMB554_RS03255 PF01514 Secretory protein of YscJ/FliF family SMB554_RS03255 PF08345 Flagellar M-ring protein C-terminal SMB554_RS03260 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS03260 PF03472 Autoinducer binding domain SMB554_RS03275 PF01312 FlhB HrpN YscU SpaS Family SMB554_RS03280 PF14842 FliG N-terminal domain SMB554_RS03280 PF01706 FliG C-terminal domain SMB554_RS03280 PF14841 FliG middle domain SMB554_RS03285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMB554_RS03290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SMB554_RS03295 PF01618 MotA/TolQ/ExbB proton channel family SMB554_RS03305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMB554_RS03305 PF00460 Flagella basal body rod protein SMB554_RS03310 PF18269 T3SS EscN ATPase C-terminal domain SMB554_RS03310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMB554_RS03320 PF00460 Flagella basal body rod protein SMB554_RS03325 PF00460 Flagella basal body rod protein SMB554_RS03325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMB554_RS03330 PF02049 Flagellar hook-basal body complex protein FliE SMB554_RS03335 PF00460 Flagella basal body rod protein SMB554_RS03335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMB554_RS03340 PF13144 Chaperone for flagella basal body P-ring formation SMB554_RS03345 PF02119 Flagellar P-ring protein SMB554_RS03355 PF02107 Flagellar L-ring protein SMB554_RS03365 PF00813 FliP family SMB554_RS03370 PF00700 Bacterial flagellin C-terminal helical region SMB554_RS03370 PF00669 Bacterial flagellin N-terminal helical region SMB554_RS03375 PF00669 Bacterial flagellin N-terminal helical region SMB554_RS03375 PF00700 Bacterial flagellin C-terminal helical region SMB554_RS03380 PF00700 Bacterial flagellin C-terminal helical region SMB554_RS03380 PF00669 Bacterial flagellin N-terminal helical region SMB554_RS03385 PF00700 Bacterial flagellin C-terminal helical region SMB554_RS03385 PF00669 Bacterial flagellin N-terminal helical region SMB554_RS03395 PF00691 OmpA family SMB554_RS03395 PF13677 Membrane MotB of proton-channel complex MotA/MotB SMB554_RS03405 PF02120 Flagellar hook-length control protein FliK SMB554_RS03415 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS03420 PF00460 Flagella basal body rod protein SMB554_RS03420 PF07559 Flagellar basal body protein FlaE SMB554_RS03420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SMB554_RS03440 PF07378 Flagellar protein FlbT SMB554_RS03445 PF03963 Flagellar hook capping protein - N-terminal region SMB554_RS03450 PF01313 Bacterial export proteins, family 3 SMB554_RS03455 PF00771 FHIPEP family SMB554_RS03460 PF01311 Bacterial export proteins, family 1 SMB554_RS03490 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SMB554_RS03490 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SMB554_RS03495 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS03500 PF01547 Bacterial extracellular solute-binding protein SMB554_RS03505 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03510 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03515 PF00128 Alpha amylase, catalytic domain SMB554_RS03520 PF00005 ABC transporter SMB554_RS03520 PF17912 MalK OB fold domain SMB554_RS03520 PF03459 TOBE domain SMB554_RS03530 PF01609 Transposase DDE domain SMB554_RS03540 PF00920 Dehydratase family SMB554_RS03545 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SMB554_RS03550 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SMB554_RS03550 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SMB554_RS03555 PF01266 FAD dependent oxidoreductase SMB554_RS03560 PF00120 Glutamine synthetase, catalytic domain SMB554_RS03575 PF00672 HAMP domain SMB554_RS03575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS03595 PF00463 Isocitrate lyase family SMB554_RS03600 PF06114 IrrE N-terminal-like domain SMB554_RS03600 PF01381 Helix-turn-helix SMB554_RS03600 PF09856 Predicted transcriptional regulator (DUF2083) SMB554_RS03605 PF13416 Bacterial extracellular solute-binding protein SMB554_RS03610 PF00005 ABC transporter SMB554_RS03610 PF08402 TOBE domain SMB554_RS03615 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03620 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03630 PF00501 AMP-binding enzyme SMB554_RS03630 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS03635 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03640 PF13188 PAS domain SMB554_RS03640 PF00989 PAS fold SMB554_RS03640 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS03640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS03660 PF01565 FAD binding domain SMB554_RS03660 PF04030 D-arabinono-1,4-lactone oxidase SMB554_RS03670 PF00171 Aldehyde dehydrogenase family SMB554_RS03675 PF05987 Bacterial protein of unknown function (DUF898) SMB554_RS03685 PF13416 Bacterial extracellular solute-binding protein SMB554_RS03690 PF02082 Transcriptional regulator SMB554_RS03695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS03700 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03705 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS03705 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS03710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS03710 PF00005 ABC transporter SMB554_RS03715 PF00005 ABC transporter SMB554_RS03715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS03720 PF01042 Endoribonuclease L-PSP SMB554_RS03735 PF00072 Response regulator receiver domain SMB554_RS03760 PF01266 FAD dependent oxidoreductase SMB554_RS03770 PF02308 MgtC family SMB554_RS03825 PF02417 Chromate transporter SMB554_RS03845 PF02541 Ppx/GppA phosphatase family SMB554_RS03850 PF01728 FtsJ-like methyltransferase SMB554_RS03860 PF07690 Major Facilitator Superfamily SMB554_RS03870 PF00571 CBS domain SMB554_RS03870 PF00478 IMP dehydrogenase / GMP reductase domain SMB554_RS03880 PF01738 Dienelactone hydrolase family SMB554_RS03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS03885 PF03466 LysR substrate binding domain SMB554_RS03890 PF06628 Catalase-related immune-responsive SMB554_RS03890 PF00199 Catalase SMB554_RS03895 PF03466 LysR substrate binding domain SMB554_RS03895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS03920 PF04107 Glutamate-cysteine ligase family 2(GCS2) SMB554_RS03925 PF04452 RNA methyltransferase SMB554_RS03930 PF01384 Phosphate transporter family SMB554_RS03940 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS03950 PF03466 LysR substrate binding domain SMB554_RS03955 PF02913 FAD linked oxidases, C-terminal domain SMB554_RS03955 PF01565 FAD binding domain SMB554_RS03960 PF01565 FAD binding domain SMB554_RS03965 PF13183 4Fe-4S dicluster domain SMB554_RS03965 PF02754 Cysteine-rich domain SMB554_RS03970 PF17969 L,D-transpeptidase C-terminal domain SMB554_RS03970 PF01476 LysM domain SMB554_RS03970 PF03734 L,D-transpeptidase catalytic domain SMB554_RS03975 PF17969 L,D-transpeptidase C-terminal domain SMB554_RS03975 PF03734 L,D-transpeptidase catalytic domain SMB554_RS03980 PF03352 Methyladenine glycosylase SMB554_RS03985 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SMB554_RS04000 PF13393 Histidyl-tRNA synthetase SMB554_RS04000 PF03129 Anticodon binding domain SMB554_RS04005 PF13393 Histidyl-tRNA synthetase SMB554_RS04010 PF01634 ATP phosphoribosyltransferase SMB554_RS04015 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS04015 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS04020 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS04020 PF14759 Reductase C-terminal SMB554_RS04030 PF00118 TCP-1/cpn60 chaperonin family SMB554_RS04035 PF00166 Chaperonin 10 Kd subunit SMB554_RS04040 PF09828 Chromate resistance exported protein SMB554_RS04050 PF01687 Riboflavin kinase SMB554_RS04050 PF06574 FAD synthetase SMB554_RS04055 PF00133 tRNA synthetases class I (I, L, M and V) SMB554_RS04055 PF08264 Anticodon-binding domain of tRNA SMB554_RS04070 PF14437 MafB19-like deaminase SMB554_RS04075 PF01479 S4 domain SMB554_RS04075 PF00849 RNA pseudouridylate synthase SMB554_RS04085 PF01734 Patatin-like phospholipase SMB554_RS04090 PF01850 PIN domain SMB554_RS04095 PF07704 Rv0623-like transcription factor SMB554_RS04100 PF00999 Sodium/hydrogen exchanger family SMB554_RS04100 PF02254 TrkA-N domain SMB554_RS04105 PF01523 Putative modulator of DNA gyrase SMB554_RS04110 PF00459 Inositol monophosphatase family SMB554_RS04120 PF00534 Glycosyl transferases group 1 SMB554_RS04120 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SMB554_RS04130 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SMB554_RS04145 PF08676 MutL C terminal dimerisation domain SMB554_RS04145 PF01119 DNA mismatch repair protein, C-terminal domain SMB554_RS04150 PF00072 Response regulator receiver domain SMB554_RS04155 PF00563 EAL domain SMB554_RS04155 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS04155 PF13188 PAS domain SMB554_RS04155 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS04160 PF03466 LysR substrate binding domain SMB554_RS04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS04165 PF06253 Trimethylamine methyltransferase (MTTB) SMB554_RS04180 PF00920 Dehydratase family SMB554_RS04185 PF08450 SMP-30/Gluconolactonase/LRE-like region SMB554_RS04190 PF01081 KDPG and KHG aldolase SMB554_RS04195 PF05035 2-keto-3-deoxy-galactonokinase SMB554_RS04205 PF01614 Bacterial transcriptional regulator SMB554_RS04205 PF09339 IclR helix-turn-helix domain SMB554_RS04210 PF03472 Autoinducer binding domain SMB554_RS04210 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS04215 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS04215 PF03472 Autoinducer binding domain SMB554_RS04220 PF10609 NUBPL iron-transfer P-loop NTPase SMB554_RS04220 PF01883 Iron-sulfur cluster assembly protein SMB554_RS04225 PF01544 CorA-like Mg2+ transporter protein SMB554_RS04230 PF02705 K+ potassium transporter SMB554_RS04240 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter SMB554_RS04245 PF00119 ATP synthase A chain SMB554_RS04250 PF00137 ATP synthase subunit C SMB554_RS04255 PF00430 ATP synthase B/B' CF(0) SMB554_RS04260 PF00430 ATP synthase B/B' CF(0) SMB554_RS04265 PF00872 Transposase, Mutator family SMB554_RS04275 PF01351 Ribonuclease HII SMB554_RS04295 PF00994 Probable molybdopterin binding domain SMB554_RS04300 PF00288 GHMP kinases N terminal domain SMB554_RS04300 PF08544 GHMP kinases C terminal SMB554_RS04310 PF00348 Polyprenyl synthetase SMB554_RS04325 PF01343 Peptidase family S49 SMB554_RS04325 PF06965 Na+/H+ antiporter 1 SMB554_RS04335 PF02091 Glycyl-tRNA synthetase alpha subunit SMB554_RS04345 PF04011 LemA family SMB554_RS04355 PF02092 Glycyl-tRNA synthetase beta subunit SMB554_RS04355 PF05746 DALR anticodon binding domain SMB554_RS04360 PF04463 Protein of unknown function (DUF523) SMB554_RS04370 PF02844 Phosphoribosylglycinamide synthetase, N domain SMB554_RS04370 PF02843 Phosphoribosylglycinamide synthetase, C domain SMB554_RS04370 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SMB554_RS04375 PF00563 EAL domain SMB554_RS04375 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS04385 PF07690 Major Facilitator Superfamily SMB554_RS04390 PF02311 AraC-like ligand binding domain SMB554_RS04390 PF12833 Helix-turn-helix domain SMB554_RS04395 PF06629 MltA-interacting protein MipA SMB554_RS04400 PF01040 UbiA prenyltransferase family SMB554_RS04415 PF02913 FAD linked oxidases, C-terminal domain SMB554_RS04415 PF01565 FAD binding domain SMB554_RS04420 PF01300 Telomere recombination SMB554_RS04420 PF03481 Putative GTP-binding controlling metal-binding SMB554_RS04430 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SMB554_RS04430 PF00355 Rieske [2Fe-2S] domain SMB554_RS04435 PF00970 Oxidoreductase FAD-binding domain SMB554_RS04435 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS04435 PF00175 Oxidoreductase NAD-binding domain SMB554_RS04445 PF07886 BA14K-like protein SMB554_RS04460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS04460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS04460 PF12806 Acetyl-CoA dehydrogenase C-terminal like SMB554_RS04460 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS04475 PF02743 Cache domain SMB554_RS04475 PF00672 HAMP domain SMB554_RS04475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS04480 PF05958 tRNA (Uracil-5-)-methyltransferase SMB554_RS04485 PF01728 FtsJ-like methyltransferase SMB554_RS04485 PF01479 S4 domain SMB554_RS04490 PF02780 Transketolase, C-terminal domain SMB554_RS04490 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SMB554_RS04490 PF02779 Transketolase, pyrimidine binding domain SMB554_RS04495 PF02678 Pirin SMB554_RS04495 PF05726 Pirin C-terminal cupin domain SMB554_RS04500 PF02609 Exonuclease VII small subunit SMB554_RS04505 PF00850 Histone deacetylase domain SMB554_RS04510 PF00107 Zinc-binding dehydrogenase SMB554_RS04510 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS04520 PF00108 Thiolase, N-terminal domain SMB554_RS04520 PF02803 Thiolase, C-terminal domain SMB554_RS04525 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS04525 PF00501 AMP-binding enzyme SMB554_RS04530 PF02632 BioY family SMB554_RS04535 PF02361 Cobalt transport protein SMB554_RS04540 PF00005 ABC transporter SMB554_RS04545 PF06224 Winged helix DNA-binding domain SMB554_RS04550 PF01523 Putative modulator of DNA gyrase SMB554_RS04555 PF07943 Penicillin-binding protein 5, C-terminal domain SMB554_RS04555 PF00768 D-alanyl-D-alanine carboxypeptidase SMB554_RS04565 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SMB554_RS04565 PF01243 Pyridoxamine 5'-phosphate oxidase SMB554_RS04575 PF00226 DnaJ domain SMB554_RS04575 PF00684 DnaJ central domain SMB554_RS04575 PF01556 DnaJ C terminal domain SMB554_RS04585 PF00300 Histidine phosphatase superfamily (branch 1) SMB554_RS04595 PF01264 Chorismate synthase SMB554_RS04600 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SMB554_RS04600 PF00925 GTP cyclohydrolase II SMB554_RS04615 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMB554_RS04615 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMB554_RS04620 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS04625 PF01040 UbiA prenyltransferase family SMB554_RS04635 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 SMB554_RS04640 PF00510 Cytochrome c oxidase subunit III SMB554_RS04655 PF02104 SURF1 family SMB554_RS04660 PF02401 LytB protein SMB554_RS04665 PF01636 Phosphotransferase enzyme family SMB554_RS04670 PF00075 RNase H SMB554_RS04675 PF00462 Glutaredoxin SMB554_RS04675 PF08534 Redoxin SMB554_RS04685 PF02622 Uncharacterized ACR, COG1678 SMB554_RS04690 PF00563 EAL domain SMB554_RS04690 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS04690 PF08447 PAS fold SMB554_RS04690 PF08448 PAS fold SMB554_RS04695 PF13302 Acetyltransferase (GNAT) domain SMB554_RS04700 PF00675 Insulinase (Peptidase family M16) SMB554_RS04700 PF05193 Peptidase M16 inactive domain SMB554_RS04705 PF14821 Threonine synthase N terminus SMB554_RS04705 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS04715 PF13458 Periplasmic binding protein SMB554_RS04720 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS04730 PF18755 Restriction Enzyme Adenine Methylase Associated SMB554_RS04730 PF01555 DNA methylase SMB554_RS04740 PF14815 NUDIX domain SMB554_RS04740 PF00730 HhH-GPD superfamily base excision DNA repair protein SMB554_RS04760 PF02463 RecF/RecN/SMC N terminal domain SMB554_RS04765 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SMB554_RS04765 PF02896 PEP-utilising enzyme, TIM barrel domain SMB554_RS04765 PF00391 PEP-utilising enzyme, mobile domain SMB554_RS04800 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMB554_RS04800 PF12795 Mechanosensitive ion channel porin domain SMB554_RS04800 PF00924 Mechanosensitive ion channel SMB554_RS04825 PF00009 Elongation factor Tu GTP binding domain SMB554_RS04830 PF01507 Phosphoadenosine phosphosulfate reductase family SMB554_RS04835 PF01507 Phosphoadenosine phosphosulfate reductase family SMB554_RS04850 PF05199 GMC oxidoreductase SMB554_RS04850 PF00732 GMC oxidoreductase SMB554_RS04860 PF00171 Aldehyde dehydrogenase family SMB554_RS04865 PF12411 Choline sulfatase enzyme C terminal SMB554_RS04865 PF00884 Sulfatase SMB554_RS04870 PF13977 BetI-type transcriptional repressor, C-terminal SMB554_RS04870 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS04880 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS04880 PF13188 PAS domain SMB554_RS04880 PF00563 EAL domain SMB554_RS04880 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS04885 PF14765 Polyketide synthase dehydratase SMB554_RS04885 PF00698 Acyl transferase domain SMB554_RS04885 PF00550 Phosphopantetheine attachment site SMB554_RS04885 PF08659 KR domain SMB554_RS04885 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS04885 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS04885 PF00107 Zinc-binding dehydrogenase SMB554_RS04885 PF16197 Ketoacyl-synthetase C-terminal extension SMB554_RS04885 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS04900 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS04900 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS04910 PF03466 LysR substrate binding domain SMB554_RS04910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS04920 PF00563 EAL domain SMB554_RS04920 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS04920 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS04925 PF01476 LysM domain SMB554_RS04925 PF03734 L,D-transpeptidase catalytic domain SMB554_RS04925 PF17969 L,D-transpeptidase C-terminal domain SMB554_RS04930 PF01047 MarR family SMB554_RS04935 PF02566 OsmC-like protein SMB554_RS04940 PF03831 PhnA domain SMB554_RS04940 PF08274 PhnA Zinc-Ribbon SMB554_RS04945 PF05872 Bacterial protein of unknown function (DUF853) SMB554_RS04955 PF00248 Aldo/keto reductase family SMB554_RS04965 PF13649 Methyltransferase domain SMB554_RS04970 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS04980 PF00107 Zinc-binding dehydrogenase SMB554_RS04980 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS04985 PF01063 Amino-transferase class IV SMB554_RS05000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SMB554_RS05000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SMB554_RS05010 PF01810 LysE type translocator SMB554_RS05015 PF01322 Cytochrome C' SMB554_RS05020 PF00034 Cytochrome c SMB554_RS05030 PF00376 MerR family regulatory protein SMB554_RS05030 PF09278 MerR, DNA binding SMB554_RS05040 PF01011 PQQ enzyme repeat SMB554_RS05045 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SMB554_RS05055 PF00326 Prolyl oligopeptidase family SMB554_RS05055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SMB554_RS05060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMB554_RS05065 PF00582 Universal stress protein family SMB554_RS05075 PF03006 Haemolysin-III related SMB554_RS05085 PF01641 SelR domain SMB554_RS05090 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMB554_RS05090 PF00361 Proton-conducting membrane transporter SMB554_RS05090 PF13244 Domain of unknown function (DUF4040) SMB554_RS05095 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SMB554_RS05100 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMB554_RS05105 PF00361 Proton-conducting membrane transporter SMB554_RS05110 PF01899 Na+/H+ ion antiporter subunit SMB554_RS05115 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SMB554_RS05120 PF03334 Na+/H+ antiporter subunit SMB554_RS05125 PF05443 ROS/MUCR transcriptional regulator protein SMB554_RS05130 PF02657 Fe-S metabolism associated domain SMB554_RS05135 PF17264 Family of unknown function (DUF5330) SMB554_RS05140 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS05140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS05190 PF00912 Transglycosylase SMB554_RS05190 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS05195 PF03692 Putative zinc- or iron-chelating domain SMB554_RS05210 PF01348 Type II intron maturase SMB554_RS05210 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS05235 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS05235 PF00072 Response regulator receiver domain SMB554_RS05240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS05255 PF03100 CcmE SMB554_RS05260 PF01578 Cytochrome C assembly protein SMB554_RS05260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SMB554_RS05265 PF03918 Cytochrome C biogenesis protein SMB554_RS05270 PF13180 PDZ domain SMB554_RS05275 PF00072 Response regulator receiver domain SMB554_RS05275 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS05280 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS05280 PF00672 HAMP domain SMB554_RS05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS05285 PF08335 GlnD PII-uridylyltransferase SMB554_RS05285 PF03710 Glutamate-ammonia ligase adenylyltransferase SMB554_RS05290 PF00989 PAS fold SMB554_RS05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS05290 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS05295 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SMB554_RS05295 PF11940 Domain of unknown function (DUF3458) Ig-like fold SMB554_RS05295 PF01433 Peptidase family M1 domain SMB554_RS05305 PF07690 Major Facilitator Superfamily SMB554_RS05320 PF03167 Uracil DNA glycosylase superfamily SMB554_RS05325 PF00012 Hsp70 protein SMB554_RS05345 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS05350 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS05350 PF00107 Zinc-binding dehydrogenase SMB554_RS05355 PF01638 HxlR-like helix-turn-helix SMB554_RS05365 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase SMB554_RS05370 PF00535 Glycosyl transferase family 2 SMB554_RS05380 PF01048 Phosphorylase superfamily SMB554_RS05380 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SMB554_RS05385 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SMB554_RS05400 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS05400 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS05415 PF00155 Aminotransferase class I and II SMB554_RS05430 PF01381 Helix-turn-helix SMB554_RS05435 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB SMB554_RS05445 PF02530 Porin subfamily SMB554_RS05450 PF00589 Phage integrase family SMB554_RS05450 PF13495 Phage integrase, N-terminal SAM-like domain SMB554_RS05455 PF02530 Porin subfamily SMB554_RS05460 PF07886 BA14K-like protein SMB554_RS05465 PF01464 Transglycosylase SLT domain SMB554_RS05465 PF14718 Soluble lytic murein transglycosylase L domain SMB554_RS05470 PF00701 Dihydrodipicolinate synthetase family SMB554_RS05475 PF01668 SmpB protein SMB554_RS05485 PF12951 Passenger-associated-transport-repeat SMB554_RS05495 PF01192 RNA polymerase Rpb6 SMB554_RS05500 PF02824 TGS domain SMB554_RS05500 PF04607 Region found in RelA / SpoT proteins SMB554_RS05500 PF13291 ACT domain SMB554_RS05525 PF01648 4'-phosphopantetheinyl transferase superfamily SMB554_RS05530 PF10502 Signal peptidase, peptidase S26 SMB554_RS05535 PF14622 Ribonuclease-III-like SMB554_RS05535 PF00035 Double-stranded RNA binding motif SMB554_RS05540 PF07650 KH domain SMB554_RS05540 PF01926 50S ribosome-binding GTPase SMB554_RS05545 PF03358 NADPH-dependent FMN reductase SMB554_RS05550 PF03960 ArsC family SMB554_RS05555 PF00230 Major intrinsic protein SMB554_RS05565 PF03009 Glycerophosphoryl diester phosphodiesterase family SMB554_RS05575 PF09371 Tex-like protein N-terminal domain SMB554_RS05575 PF16921 Tex protein YqgF-like domain SMB554_RS05575 PF17674 HHH domain SMB554_RS05575 PF00575 S1 RNA binding domain SMB554_RS05585 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMB554_RS05585 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMB554_RS05585 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMB554_RS05590 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS05610 PF01476 LysM domain SMB554_RS05610 PF03734 L,D-transpeptidase catalytic domain SMB554_RS05615 PF02565 Recombination protein O C terminal SMB554_RS05615 PF11967 Recombination protein O N terminal SMB554_RS05630 PF01966 HD domain SMB554_RS05645 PF02445 Quinolinate synthetase A protein SMB554_RS05650 PF02910 Fumarate reductase flavoprotein C-term SMB554_RS05650 PF00890 FAD binding domain SMB554_RS05655 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SMB554_RS05655 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SMB554_RS05660 PF00080 Copper/zinc superoxide dismutase (SODC) SMB554_RS05665 PF00664 ABC transporter transmembrane region SMB554_RS05665 PF03412 Peptidase C39 family SMB554_RS05665 PF00005 ABC transporter SMB554_RS05690 PF01966 HD domain SMB554_RS05695 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS05715 PF00293 NUDIX domain SMB554_RS05735 PF01406 tRNA synthetases class I (C) catalytic domain SMB554_RS05755 PF00561 alpha/beta hydrolase fold SMB554_RS05760 PF08502 LeuA allosteric (dimerisation) domain SMB554_RS05760 PF00682 HMGL-like SMB554_RS05765 PF00892 EamA-like transporter family SMB554_RS05770 PF03641 Possible lysine decarboxylase SMB554_RS05780 PF00005 ABC transporter SMB554_RS05780 PF00664 ABC transporter transmembrane region SMB554_RS05785 PF02666 Phosphatidylserine decarboxylase SMB554_RS05790 PF01066 CDP-alcohol phosphatidyltransferase SMB554_RS05795 PF01609 Transposase DDE domain SMB554_RS05800 PF00106 short chain dehydrogenase SMB554_RS05805 PF00156 Phosphoribosyl transferase domain SMB554_RS05805 PF13537 Glutamine amidotransferase domain SMB554_RS05815 PF18073 Rubredoxin metal binding domain SMB554_RS05815 PF06745 KaiC SMB554_RS05820 PF01168 Alanine racemase, N-terminal domain SMB554_RS05820 PF00842 Alanine racemase, C-terminal domain SMB554_RS05825 PF12833 Helix-turn-helix domain SMB554_RS05825 PF12852 Cupin SMB554_RS05840 PF00772 DnaB-like helicase N terminal domain SMB554_RS05840 PF03796 DnaB-like helicase C terminal domain SMB554_RS05855 PF13533 Biotin-lipoyl like SMB554_RS05860 PF03948 Ribosomal protein L9, C-terminal domain SMB554_RS05860 PF01281 Ribosomal protein L9, N-terminal domain SMB554_RS05870 PF01084 Ribosomal protein S18 SMB554_RS05875 PF01250 Ribosomal protein S6 SMB554_RS05885 PF00248 Aldo/keto reductase family SMB554_RS05890 PF00698 Acyl transferase domain SMB554_RS05900 PF00550 Phosphopantetheine attachment site SMB554_RS05905 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS05905 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS05910 PF02618 YceG-like family SMB554_RS05915 PF08340 Domain of unknown function (DUF1732) SMB554_RS05915 PF03755 YicC-like family, N-terminal region SMB554_RS05920 PF00625 Guanylate kinase SMB554_RS05930 PF00398 Ribosomal RNA adenine dimethylase SMB554_RS05935 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMB554_RS05965 PF00883 Cytosol aminopeptidase family, catalytic domain SMB554_RS05965 PF02789 Cytosol aminopeptidase family, N-terminal domain SMB554_RS05975 PF13808 DDE_Tnp_1-associated SMB554_RS05975 PF01609 Transposase DDE domain SMB554_RS05980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS05990 PF12848 ABC transporter SMB554_RS05990 PF00005 ABC transporter SMB554_RS06000 PF00501 AMP-binding enzyme SMB554_RS06000 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS06010 PF13417 Glutathione S-transferase, N-terminal domain SMB554_RS06015 PF00334 Nucleoside diphosphate kinase SMB554_RS06040 PF02391 MoaE protein SMB554_RS06050 PF01066 CDP-alcohol phosphatidyltransferase SMB554_RS06055 PF02151 UvrB/uvrC motif SMB554_RS06055 PF01541 GIY-YIG catalytic domain SMB554_RS06055 PF08459 UvrC Helix-hairpin-helix N-terminal SMB554_RS06065 PF13505 Outer membrane protein beta-barrel domain SMB554_RS06085 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SMB554_RS06090 PF00384 Molybdopterin oxidoreductase SMB554_RS06090 PF01568 Molydopterin dinucleotide binding domain SMB554_RS06090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS06095 PF00293 NUDIX domain SMB554_RS06100 PF03706 Lysylphosphatidylglycerol synthase TM region SMB554_RS06100 PF09924 Uncharacterised conserved protein (DUF2156) SMB554_RS06110 PF00551 Formyl transferase SMB554_RS06115 PF02769 AIR synthase related protein, C-terminal domain SMB554_RS06115 PF00586 AIR synthase related protein, N-terminal domain SMB554_RS06120 PF01594 AI-2E family transporter SMB554_RS06130 PF13089 Polyphosphate kinase N-terminal domain SMB554_RS06130 PF17941 Polyphosphate kinase C-terminal domain 1 SMB554_RS06130 PF13090 Polyphosphate kinase C-terminal domain 2 SMB554_RS06130 PF02503 Polyphosphate kinase middle domain SMB554_RS06135 PF02541 Ppx/GppA phosphatase family SMB554_RS06145 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS06150 PF00570 HRDC domain SMB554_RS06150 PF01612 3'-5' exonuclease SMB554_RS06155 PF00394 Multicopper oxidase SMB554_RS06155 PF07731 Multicopper oxidase SMB554_RS06155 PF07732 Multicopper oxidase SMB554_RS06170 PF01336 OB-fold nucleic acid binding domain SMB554_RS06170 PF02938 GAD domain SMB554_RS06170 PF00152 tRNA synthetases class II (D, K and N) SMB554_RS06180 PF00118 TCP-1/cpn60 chaperonin family SMB554_RS06195 PF03989 DNA gyrase C-terminal domain, beta-propeller SMB554_RS06195 PF00521 DNA gyrase/topoisomerase IV, subunit A SMB554_RS06210 PF04376 Arginine-tRNA-protein transferase, N terminus SMB554_RS06210 PF04377 Arginine-tRNA-protein transferase, C terminus SMB554_RS06220 PF00490 Delta-aminolevulinic acid dehydratase SMB554_RS06235 PF03734 L,D-transpeptidase catalytic domain SMB554_RS06240 PF00464 Serine hydroxymethyltransferase SMB554_RS06245 PF03477 ATP cone domain SMB554_RS06250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SMB554_RS06250 PF01872 RibD C-terminal domain SMB554_RS06255 PF00677 Lumazine binding domain SMB554_RS06265 PF13673 Acetyltransferase (GNAT) domain SMB554_RS06265 PF13302 Acetyltransferase (GNAT) domain SMB554_RS06265 PF03352 Methyladenine glycosylase SMB554_RS06265 PF00117 Glutamine amidotransferase class-I SMB554_RS06265 PF00958 GMP synthase C terminal domain SMB554_RS06275 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMB554_RS06280 PF01029 NusB family SMB554_RS06285 PF07690 Major Facilitator Superfamily SMB554_RS06290 PF03030 Inorganic H+ pyrophosphatase SMB554_RS06310 PF02504 Fatty acid synthesis protein SMB554_RS06315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMB554_RS06315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMB554_RS06320 PF00216 Bacterial DNA-binding protein SMB554_RS06325 PF13411 MerR HTH family regulatory protein SMB554_RS06355 PF13439 Glycosyltransferase Family 4 SMB554_RS06355 PF00534 Glycosyl transferases group 1 SMB554_RS06365 PF02397 Bacterial sugar transferase SMB554_RS06370 PF13439 Glycosyltransferase Family 4 SMB554_RS06370 PF00534 Glycosyl transferases group 1 SMB554_RS06380 PF02706 Chain length determinant protein SMB554_RS06390 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS06405 PF02628 Cytochrome oxidase assembly protein SMB554_RS06410 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMB554_RS06415 PF00491 Arginase family SMB554_RS06420 PF00380 Ribosomal protein S9/S16 SMB554_RS06425 PF00572 Ribosomal protein L13 SMB554_RS06435 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS06445 PF13380 CoA binding domain SMB554_RS06450 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS06460 PF00067 Cytochrome P450 SMB554_RS06470 PF13091 PLD-like domain SMB554_RS06475 PF00574 Clp protease SMB554_RS06480 PF07724 AAA domain (Cdc48 subfamily) SMB554_RS06480 PF10431 C-terminal, D2-small domain, of ClpB protein SMB554_RS06480 PF06689 ClpX C4-type zinc finger SMB554_RS06485 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMB554_RS06485 PF05362 Lon protease (S16) C-terminal proteolytic domain SMB554_RS06485 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS06490 PF00216 Bacterial DNA-binding protein SMB554_RS06510 PF00149 Calcineurin-like phosphoesterase SMB554_RS06515 PF13514 AAA domain SMB554_RS06545 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMB554_RS06550 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMB554_RS06555 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMB554_RS06560 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMB554_RS06575 PF10531 SLBB domain SMB554_RS06575 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMB554_RS06575 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMB554_RS06580 PF00829 Ribosomal prokaryotic L21 protein SMB554_RS06585 PF00384 Molybdopterin oxidoreductase SMB554_RS06585 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal SMB554_RS06585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMB554_RS06590 PF00146 NADH dehydrogenase SMB554_RS06595 PF12838 4Fe-4S dicluster domain SMB554_RS06600 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMB554_RS06605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMB554_RS06610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMB554_RS06610 PF00361 Proton-conducting membrane transporter SMB554_RS06615 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus SMB554_RS06615 PF00361 Proton-conducting membrane transporter SMB554_RS06620 PF00361 Proton-conducting membrane transporter SMB554_RS06625 PF03099 Biotin/lipoate A/B protein ligase family SMB554_RS06625 PF02237 Biotin protein ligase C terminal domain SMB554_RS06630 PF12706 Beta-lactamase superfamily domain SMB554_RS06630 PF17770 Ribonuclease J C-terminal domain SMB554_RS06630 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMB554_RS06660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMB554_RS06660 PF03129 Anticodon binding domain SMB554_RS06665 PF02687 FtsX-like permease family SMB554_RS06665 PF12704 MacB-like periplasmic core domain SMB554_RS06670 PF00005 ABC transporter SMB554_RS06675 PF02811 PHP domain SMB554_RS06675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMB554_RS06675 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMB554_RS06675 PF14579 Helix-hairpin-helix motif SMB554_RS06685 PF00817 impB/mucB/samB family SMB554_RS06685 PF11799 impB/mucB/samB family C-terminal domain SMB554_RS06695 PF00072 Response regulator receiver domain SMB554_RS06700 PF00072 Response regulator receiver domain SMB554_RS06700 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS06705 PF00471 Ribosomal protein L33 SMB554_RS06725 PF00773 RNB domain SMB554_RS06725 PF00575 S1 RNA binding domain SMB554_RS06725 PF17876 Cold shock domain SMB554_RS06725 PF08461 Ribonuclease R winged-helix domain SMB554_RS06725 PF08206 Ribonuclease B OB domain SMB554_RS06730 PF01131 DNA topoisomerase SMB554_RS06730 PF01396 Topoisomerase DNA binding C4 zinc finger SMB554_RS06730 PF13368 Topoisomerase C-terminal repeat SMB554_RS06730 PF01751 Toprim domain SMB554_RS06735 PF02481 DNA recombination-mediator protein A SMB554_RS06735 PF17782 DprA winged helix domain SMB554_RS06740 PF02660 Glycerol-3-phosphate acyltransferase SMB554_RS06745 PF01979 Amidohydrolase family SMB554_RS06750 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMB554_RS06750 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMB554_RS06755 PF18158 Adaptive response protein AidB N-terminal domain SMB554_RS06755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS06755 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS06775 PF03652 Holliday junction resolvase SMB554_RS06785 PF02686 Glu-tRNAGln amidotransferase C subunit SMB554_RS06790 PF01425 Amidase SMB554_RS06795 PF09857 Putative toxin of bacterial toxin-antitoxin pair SMB554_RS06800 PF02934 GatB/GatE catalytic domain SMB554_RS06800 PF02637 GatB domain SMB554_RS06820 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SMB554_RS06825 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS06825 PF02785 Biotin carboxylase C-terminal domain SMB554_RS06825 PF00289 Biotin carboxylase, N-terminal domain SMB554_RS06830 PF00364 Biotin-requiring enzyme SMB554_RS06835 PF01220 Dehydroquinase class II SMB554_RS06850 PF00155 Aminotransferase class I and II SMB554_RS06870 PF01348 Type II intron maturase SMB554_RS06870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS06895 PF12111 Polyribonucleotide phosphorylase C terminal SMB554_RS06895 PF10150 Ribonuclease E/G family SMB554_RS06895 PF00575 S1 RNA binding domain SMB554_RS06905 PF11741 AMIN domain SMB554_RS06905 PF01520 N-acetylmuramoyl-L-alanine amidase SMB554_RS06910 PF17092 Penicillin-binding protein OB-like domain SMB554_RS06910 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS06910 PF00912 Transglycosylase SMB554_RS06920 PF00472 RF-1 domain SMB554_RS06920 PF03462 PCRF domain SMB554_RS06935 PF01513 ATP-NAD kinase SMB554_RS07015 PF04098 Rad52/22 family double-strand break repair protein SMB554_RS07095 PF01555 DNA methylase SMB554_RS07095 PF18755 Restriction Enzyme Adenine Methylase Associated SMB554_RS07135 PF00308 Bacterial dnaA protein SMB554_RS07135 PF08299 Bacterial dnaA protein helix-turn-helix SMB554_RS07135 PF11638 DnaA N-terminal domain SMB554_RS07165 PF04466 Phage terminase large subunit SMB554_RS07165 PF17288 Terminase RNAseH like domain SMB554_RS07230 PF07484 Phage Tail Collar Domain SMB554_RS07245 PF00534 Glycosyl transferases group 1 SMB554_RS07245 PF13439 Glycosyltransferase Family 4 SMB554_RS07280 PF13180 PDZ domain SMB554_RS07300 PF03466 LysR substrate binding domain SMB554_RS07300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS07305 PF02525 Flavodoxin-like fold SMB554_RS07315 PF00588 SpoU rRNA Methylase family SMB554_RS07315 PF08032 RNA 2'-O ribose methyltransferase substrate binding SMB554_RS07330 PF00009 Elongation factor Tu GTP binding domain SMB554_RS07330 PF03144 Elongation factor Tu domain 2 SMB554_RS07330 PF03143 Elongation factor Tu C-terminal domain SMB554_RS07340 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS07350 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SMB554_RS07355 PF02357 Transcription termination factor nusG SMB554_RS07355 PF00467 KOW motif SMB554_RS07360 PF03946 Ribosomal protein L11, N-terminal domain SMB554_RS07360 PF00298 Ribosomal protein L11, RNA binding domain SMB554_RS07365 PF00687 Ribosomal protein L1p/L10e family SMB554_RS07375 PF00542 Ribosomal protein L7/L12 C-terminal domain SMB554_RS07375 PF16320 Ribosomal protein L7/L12 dimerisation domain SMB554_RS07380 PF04560 RNA polymerase Rpb2, domain 7 SMB554_RS07380 PF04563 RNA polymerase beta subunit SMB554_RS07380 PF00562 RNA polymerase Rpb2, domain 6 SMB554_RS07380 PF10385 RNA polymerase beta subunit external 1 domain SMB554_RS07380 PF04565 RNA polymerase Rpb2, domain 3 SMB554_RS07380 PF04561 RNA polymerase Rpb2, domain 2 SMB554_RS07385 PF04998 RNA polymerase Rpb1, domain 5 SMB554_RS07385 PF04983 RNA polymerase Rpb1, domain 3 SMB554_RS07385 PF00623 RNA polymerase Rpb1, domain 2 SMB554_RS07385 PF04997 RNA polymerase Rpb1, domain 1 SMB554_RS07385 PF05000 RNA polymerase Rpb1, domain 4 SMB554_RS07395 PF00164 Ribosomal protein S12/S23 SMB554_RS07400 PF00177 Ribosomal protein S7p/S5e SMB554_RS07405 PF14492 Elongation Factor G, domain II SMB554_RS07405 PF03144 Elongation factor Tu domain 2 SMB554_RS07405 PF00679 Elongation factor G C-terminus SMB554_RS07405 PF00009 Elongation factor Tu GTP binding domain SMB554_RS07405 PF03764 Elongation factor G, domain IV SMB554_RS07410 PF00009 Elongation factor Tu GTP binding domain SMB554_RS07410 PF03143 Elongation factor Tu C-terminal domain SMB554_RS07410 PF03144 Elongation factor Tu domain 2 SMB554_RS07415 PF00338 Ribosomal protein S10p/S20e SMB554_RS07420 PF00297 Ribosomal protein L3 SMB554_RS07425 PF00573 Ribosomal protein L4/L1 family SMB554_RS07430 PF00276 Ribosomal protein L23 SMB554_RS07435 PF03947 Ribosomal Proteins L2, C-terminal domain SMB554_RS07435 PF00181 Ribosomal Proteins L2, RNA binding domain SMB554_RS07440 PF00203 Ribosomal protein S19 SMB554_RS07445 PF00237 Ribosomal protein L22p/L17e SMB554_RS07450 PF07650 KH domain SMB554_RS07450 PF00189 Ribosomal protein S3, C-terminal domain SMB554_RS07455 PF00252 Ribosomal protein L16p/L10e SMB554_RS07460 PF00831 Ribosomal L29 protein SMB554_RS07465 PF00366 Ribosomal protein S17 SMB554_RS07470 PF00238 Ribosomal protein L14p/L23e SMB554_RS07475 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SMB554_RS07475 PF00467 KOW motif SMB554_RS07480 PF00281 Ribosomal protein L5 SMB554_RS07480 PF00673 ribosomal L5P family C-terminus SMB554_RS07485 PF00253 Ribosomal protein S14p/S29e SMB554_RS07490 PF00410 Ribosomal protein S8 SMB554_RS07495 PF00347 Ribosomal protein L6 SMB554_RS07500 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SMB554_RS07505 PF00333 Ribosomal protein S5, N-terminal domain SMB554_RS07505 PF03719 Ribosomal protein S5, C-terminal domain SMB554_RS07510 PF00327 Ribosomal protein L30p/L7e SMB554_RS07515 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SMB554_RS07520 PF00344 SecY translocase SMB554_RS07530 PF00416 Ribosomal protein S13/S18 SMB554_RS07535 PF00411 Ribosomal protein S11 SMB554_RS07540 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SMB554_RS07540 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SMB554_RS07540 PF01000 RNA polymerase Rpb3/RpoA insert domain SMB554_RS07545 PF01196 Ribosomal protein L17 SMB554_RS07555 PF01794 Ferric reductase like transmembrane component SMB554_RS07560 PF00174 Oxidoreductase molybdopterin binding domain SMB554_RS07565 PF13180 PDZ domain SMB554_RS07565 PF00595 PDZ domain SMB554_RS07570 PF16193 AAA C-terminal domain SMB554_RS07570 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS07570 PF12002 MgsA AAA+ ATPase C terminal SMB554_RS07575 PF00893 Small Multidrug Resistance protein SMB554_RS07585 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS07590 PF00849 RNA pseudouridylate synthase SMB554_RS07590 PF01479 S4 domain SMB554_RS07595 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SMB554_RS07600 PF00756 Putative esterase SMB554_RS07610 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SMB554_RS07615 PF00107 Zinc-binding dehydrogenase SMB554_RS07615 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS07625 PF03099 Biotin/lipoate A/B protein ligase family SMB554_RS07635 PF08298 PrkA AAA domain SMB554_RS07635 PF06798 PrkA serine protein kinase C-terminal domain SMB554_RS07640 PF04285 Protein of unknown function (DUF444) SMB554_RS07645 PF04293 SpoVR like protein SMB554_RS07660 PF01327 Polypeptide deformylase SMB554_RS07665 PF00571 CBS domain SMB554_RS07665 PF01769 Divalent cation transporter SMB554_RS07665 PF03448 MgtE intracellular N domain SMB554_RS07670 PF00376 MerR family regulatory protein SMB554_RS07670 PF09278 MerR, DNA binding SMB554_RS07690 PF03313 Serine dehydratase alpha chain SMB554_RS07690 PF03315 Serine dehydratase beta chain SMB554_RS07740 PF00571 CBS domain SMB554_RS07750 PF01734 Patatin-like phospholipase SMB554_RS07760 PF01502 Phosphoribosyl-AMP cyclohydrolase SMB554_RS07765 PF01227 GTP cyclohydrolase I SMB554_RS07775 PF01809 Putative membrane protein insertion efficiency factor SMB554_RS07790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMB554_RS07790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMB554_RS07790 PF02824 TGS domain SMB554_RS07790 PF03129 Anticodon binding domain SMB554_RS07825 PF00583 Acetyltransferase (GNAT) family SMB554_RS07830 PF00204 DNA gyrase B SMB554_RS07830 PF00986 DNA gyrase B subunit, carboxyl terminus SMB554_RS07830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS07830 PF01751 Toprim domain SMB554_RS07840 PF04030 D-arabinono-1,4-lactone oxidase SMB554_RS07840 PF01565 FAD binding domain SMB554_RS07855 PF00121 Triosephosphate isomerase SMB554_RS07860 PF03840 Preprotein translocase SecG subunit SMB554_RS07865 PF00117 Glutamine amidotransferase class-I SMB554_RS07865 PF06418 CTP synthase N-terminus SMB554_RS07875 PF00793 DAHP synthetase I family SMB554_RS07880 PF00113 Enolase, C-terminal TIM barrel domain SMB554_RS07880 PF03952 Enolase, N-terminal domain SMB554_RS07890 PF00676 Dehydrogenase E1 component SMB554_RS07895 PF02780 Transketolase, C-terminal domain SMB554_RS07895 PF02779 Transketolase, pyrimidine binding domain SMB554_RS07895 PF00364 Biotin-requiring enzyme SMB554_RS07900 PF00364 Biotin-requiring enzyme SMB554_RS07900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMB554_RS07900 PF02817 e3 binding domain SMB554_RS07915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS07915 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS07925 PF04055 Radical SAM superfamily SMB554_RS07925 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SMB554_RS07935 PF03364 Polyketide cyclase / dehydrase and lipid transport SMB554_RS07940 PF18146 Damage-inducible protein CinA KH domain SMB554_RS07940 PF02464 Competence-damaged protein SMB554_RS07940 PF00994 Probable molybdopterin binding domain SMB554_RS07945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SMB554_RS07945 PF02542 YgbB family SMB554_RS07950 PF01207 Dihydrouridine synthase (Dus) SMB554_RS07955 PF00989 PAS fold SMB554_RS07955 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS07955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS07960 PF00158 Sigma-54 interaction domain SMB554_RS07960 PF00072 Response regulator receiver domain SMB554_RS07960 PF02954 Bacterial regulatory protein, Fis family SMB554_RS07965 PF00989 PAS fold SMB554_RS07965 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS07965 PF00672 HAMP domain SMB554_RS07970 PF02954 Bacterial regulatory protein, Fis family SMB554_RS07970 PF00158 Sigma-54 interaction domain SMB554_RS07970 PF00072 Response regulator receiver domain SMB554_RS07975 PF02080 TrkA-C domain SMB554_RS07975 PF02254 TrkA-N domain SMB554_RS07980 PF01063 Amino-transferase class IV SMB554_RS07985 PF17209 Hfq protein SMB554_RS07990 PF01926 50S ribosome-binding GTPase SMB554_RS07990 PF13167 GTP-binding GTPase N-terminal SMB554_RS07990 PF16360 GTP-binding GTPase Middle Region SMB554_RS07995 PF00665 Integrase core domain SMB554_RS08000 PF03819 MazG nucleotide pyrophosphohydrolase domain SMB554_RS08010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS08010 PF14824 Sirohaem biosynthesis protein central SMB554_RS08010 PF10414 Sirohaem synthase dimerisation region SMB554_RS08020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SMB554_RS08020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SMB554_RS08030 PF00970 Oxidoreductase FAD-binding domain SMB554_RS08030 PF00175 Oxidoreductase NAD-binding domain SMB554_RS08040 PF00005 ABC transporter SMB554_RS08045 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS08050 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS08055 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS08060 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS08065 PF01494 FAD binding domain SMB554_RS08075 PF00561 alpha/beta hydrolase fold SMB554_RS08080 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS08080 PF06426 Serine acetyltransferase, N-terminal SMB554_RS08095 PF02617 ATP-dependent Clp protease adaptor protein ClpS SMB554_RS08100 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS08100 PF10431 C-terminal, D2-small domain, of ClpB protein SMB554_RS08100 PF02861 Clp amino terminal domain, pathogenicity island component SMB554_RS08100 PF07724 AAA domain (Cdc48 subfamily) SMB554_RS08100 PF17871 AAA lid domain SMB554_RS08115 PF01230 HIT domain SMB554_RS08145 PF00318 Ribosomal protein S2 SMB554_RS08150 PF00889 Elongation factor TS SMB554_RS08155 PF00696 Amino acid kinase family SMB554_RS08160 PF01765 Ribosome recycling factor SMB554_RS08165 PF01255 Putative undecaprenyl diphosphate synthase SMB554_RS08175 PF17820 PDZ domain SMB554_RS08175 PF02163 Peptidase family M50 SMB554_RS08180 PF01103 Surface antigen SMB554_RS08180 PF07244 Surface antigen variable number repeat SMB554_RS08185 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS08185 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SMB554_RS08190 PF07977 FabA-like domain SMB554_RS08195 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SMB554_RS08195 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS08205 PF02684 Lipid-A-disaccharide synthetase SMB554_RS08220 PF00285 Citrate synthase, C-terminal domain SMB554_RS08230 PF01618 MotA/TolQ/ExbB proton channel family SMB554_RS08235 PF02472 Biopolymer transport protein ExbD/TolR SMB554_RS08245 PF02321 Outer membrane efflux protein SMB554_RS08255 PF10458 Valyl tRNA synthetase tRNA binding arm SMB554_RS08255 PF00133 tRNA synthetases class I (I, L, M and V) SMB554_RS08255 PF08264 Anticodon-binding domain of tRNA SMB554_RS08265 PF08238 Sel1 repeat SMB554_RS08275 PF13091 PLD-like domain SMB554_RS08275 PF13396 Phospholipase_D-nuclease N-terminal SMB554_RS08280 PF01521 Iron-sulphur cluster biosynthesis SMB554_RS08285 PF13286 Phosphohydrolase-associated domain SMB554_RS08285 PF01966 HD domain SMB554_RS08290 PF00750 tRNA synthetases class I (R) SMB554_RS08290 PF05746 DALR anticodon binding domain SMB554_RS08290 PF03485 Arginyl tRNA synthetase N terminal domain SMB554_RS08300 PF00933 Glycosyl hydrolase family 3 N terminal domain SMB554_RS08305 PF02616 Segregation and condensation protein ScpA SMB554_RS08310 PF04079 Segregation and condensation complex subunit ScpB SMB554_RS08315 PF00005 ABC transporter SMB554_RS08315 PF17850 CysA C-terminal regulatory domain SMB554_RS08315 PF12857 TOBE-like domain SMB554_RS08320 PF02416 mttA/Hcf106 family SMB554_RS08325 PF02416 mttA/Hcf106 family SMB554_RS08330 PF00902 Sec-independent protein translocase protein (TatC) SMB554_RS08335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SMB554_RS08335 PF02403 Seryl-tRNA synthetase N-terminal domain SMB554_RS08340 PF01975 Survival protein SurE SMB554_RS08355 PF01551 Peptidase family M23 SMB554_RS08355 PF01476 LysM domain SMB554_RS08365 PF02699 Preprotein translocase subunit SMB554_RS08370 PF07549 SecD/SecF GG Motif SMB554_RS08370 PF02355 Protein export membrane protein SMB554_RS08390 PF01134 Glucose inhibited division protein A SMB554_RS08415 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SMB554_RS08415 PF05697 Bacterial trigger factor protein (TF) SMB554_RS08415 PF05698 Bacterial trigger factor protein (TF) C-terminus SMB554_RS08420 PF02347 Glycine cleavage system P-protein SMB554_RS08425 PF01597 Glycine cleavage H-protein SMB554_RS08430 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS08430 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS08460 PF02867 Ribonucleotide reductase, barrel domain SMB554_RS08460 PF08471 Class II vitamin B12-dependent ribonucleotide reductase SMB554_RS08475 PF17755 UvrA DNA-binding domain SMB554_RS08475 PF17760 UvrA interaction domain SMB554_RS08480 PF00436 Single-strand binding protein family SMB554_RS08485 PF01914 MarC family integral membrane protein SMB554_RS08490 PF00521 DNA gyrase/topoisomerase IV, subunit A SMB554_RS08490 PF03989 DNA gyrase C-terminal domain, beta-propeller SMB554_RS08515 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase SMB554_RS08520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS08530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS08530 PF03466 LysR substrate binding domain SMB554_RS08535 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS08540 PF01037 Lrp/AsnC ligand binding domain SMB554_RS08545 PF00535 Glycosyl transferase family 2 SMB554_RS08550 PF00534 Glycosyl transferases group 1 SMB554_RS08550 PF13439 Glycosyltransferase Family 4 SMB554_RS08555 PF13439 Glycosyltransferase Family 4 SMB554_RS08555 PF00534 Glycosyl transferases group 1 SMB554_RS08560 PF00534 Glycosyl transferases group 1 SMB554_RS08565 PF01272 Transcription elongation factor, GreA/GreB, C-term SMB554_RS08565 PF03449 Transcription elongation factor, N-terminal SMB554_RS08570 PF07690 Major Facilitator Superfamily SMB554_RS08580 PF02142 MGS-like domain SMB554_RS08580 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS08580 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SMB554_RS08585 PF00107 Zinc-binding dehydrogenase SMB554_RS08585 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS08590 PF04228 Putative neutral zinc metallopeptidase SMB554_RS08595 PF07690 Major Facilitator Superfamily SMB554_RS08600 PF01554 MatE SMB554_RS08610 PF01467 Cytidylyltransferase-like SMB554_RS08615 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMB554_RS08620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SMB554_RS08625 PF02547 Queuosine biosynthesis protein SMB554_RS08630 PF01702 Queuine tRNA-ribosyltransferase SMB554_RS08640 PF00106 short chain dehydrogenase SMB554_RS08665 PF17969 L,D-transpeptidase C-terminal domain SMB554_RS08665 PF01476 LysM domain SMB554_RS08665 PF03734 L,D-transpeptidase catalytic domain SMB554_RS08685 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS08720 PF01026 TatD related DNase SMB554_RS08725 PF09334 tRNA synthetases class I (M) SMB554_RS08725 PF08264 Anticodon-binding domain of tRNA SMB554_RS08735 PF09115 DNA polymerase III, delta subunit, C terminal SMB554_RS08740 PF02223 Thymidylate kinase SMB554_RS08745 PF00768 D-alanyl-D-alanine carboxypeptidase SMB554_RS08745 PF07943 Penicillin-binding protein 5, C-terminal domain SMB554_RS08750 PF05036 Sporulation related domain SMB554_RS08750 PF03330 Lytic transglycolase SMB554_RS08790 PF00717 Peptidase S24-like SMB554_RS08790 PF01726 LexA DNA binding domain SMB554_RS08820 PF00893 Small Multidrug Resistance protein SMB554_RS08825 PF00893 Small Multidrug Resistance protein SMB554_RS08840 PF00106 short chain dehydrogenase SMB554_RS08845 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS08845 PF00571 CBS domain SMB554_RS08850 PF01411 tRNA synthetases class II (A) SMB554_RS08850 PF02272 DHHA1 domain SMB554_RS08850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMB554_RS08855 PF00581 Rhodanese-like domain SMB554_RS08870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SMB554_RS08870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SMB554_RS08875 PF01037 Lrp/AsnC ligand binding domain SMB554_RS08880 PF02872 5'-nucleotidase, C-terminal domain SMB554_RS08880 PF00149 Calcineurin-like phosphoesterase SMB554_RS08890 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS08890 PF00585 C-terminal regulatory domain of Threonine dehydratase SMB554_RS08895 PF02386 Cation transport protein SMB554_RS08910 PF03795 YCII-related domain SMB554_RS08935 PF03358 NADPH-dependent FMN reductase SMB554_RS08940 PF02464 Competence-damaged protein SMB554_RS08940 PF18146 Damage-inducible protein CinA KH domain SMB554_RS08940 PF00994 Probable molybdopterin binding domain SMB554_RS08945 PF00156 Phosphoribosyl transferase domain SMB554_RS08950 PF03853 YjeF-related protein N-terminus SMB554_RS08950 PF01256 Carbohydrate kinase SMB554_RS08955 PF00543 Nitrogen regulatory protein P-II SMB554_RS08960 PF00120 Glutamine synthetase, catalytic domain SMB554_RS08960 PF03951 Glutamine synthetase, beta-Grasp domain SMB554_RS08975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS08985 PF12833 Helix-turn-helix domain SMB554_RS08985 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SMB554_RS08990 PF00884 Sulfatase SMB554_RS09010 PF03372 Endonuclease/Exonuclease/phosphatase family SMB554_RS09025 PF00271 Helicase conserved C-terminal domain SMB554_RS09025 PF17757 UvrB interaction domain SMB554_RS09025 PF00270 DEAD/DEAH box helicase SMB554_RS09025 PF03461 TRCF domain SMB554_RS09025 PF02559 CarD-like/TRCF domain SMB554_RS09030 PF03937 Flavinator of succinate dehydrogenase SMB554_RS09035 PF17191 RecG wedge domain SMB554_RS09035 PF00271 Helicase conserved C-terminal domain SMB554_RS09035 PF00270 DEAD/DEAH box helicase SMB554_RS09045 PF13508 Acetyltransferase (GNAT) domain SMB554_RS09050 PF01380 SIS domain SMB554_RS09055 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS09055 PF14602 Hexapeptide repeat of succinyl-transferase SMB554_RS09055 PF12804 MobA-like NTP transferase domain SMB554_RS09060 PF02690 Na+/Pi-cotransporter SMB554_RS09065 PF13145 PPIC-type PPIASE domain SMB554_RS09070 PF00591 Glycosyl transferase family, a/b domain SMB554_RS09070 PF02885 Glycosyl transferase family, helical bundle domain SMB554_RS09075 PF00218 Indole-3-glycerol phosphate synthase SMB554_RS09080 PF01967 MoaC family SMB554_RS09085 PF00994 Probable molybdopterin binding domain SMB554_RS09085 PF03453 MoeA N-terminal region (domain I and II) SMB554_RS09085 PF03454 MoeA C-terminal region (domain IV) SMB554_RS09095 PF03471 Transporter associated domain SMB554_RS09095 PF00571 CBS domain SMB554_RS09095 PF01595 Cyclin M transmembrane N-terminal domain SMB554_RS09100 PF07729 FCD domain SMB554_RS09100 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS09105 PF02608 ABC transporter substrate-binding protein PnrA-like SMB554_RS09110 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS09115 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS09120 PF00005 ABC transporter SMB554_RS09125 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS09125 PF00107 Zinc-binding dehydrogenase SMB554_RS09140 PF01494 FAD binding domain SMB554_RS09145 PF03547 Membrane transport protein SMB554_RS09150 PF02683 Cytochrome C biogenesis protein transmembrane region SMB554_RS09230 PF13298 DNA polymerase Ligase (LigD) SMB554_RS09230 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS09230 PF01068 ATP dependent DNA ligase domain SMB554_RS09380 PF01343 Peptidase family S49 SMB554_RS09440 PF02899 Phage integrase, N-terminal SAM-like domain SMB554_RS09440 PF00589 Phage integrase family SMB554_RS09495 PF01965 DJ-1/PfpI family SMB554_RS09495 PF12833 Helix-turn-helix domain SMB554_RS09520 PF00501 AMP-binding enzyme SMB554_RS09520 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS09525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SMB554_RS09525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SMB554_RS09540 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS09545 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS09560 PF02780 Transketolase, C-terminal domain SMB554_RS09560 PF02779 Transketolase, pyrimidine binding domain SMB554_RS09565 PF00456 Transketolase, thiamine diphosphate binding domain SMB554_RS09570 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS09570 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS09575 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS09575 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS09580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS09585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS09585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS09590 PF03466 LysR substrate binding domain SMB554_RS09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS09595 PF00872 Transposase, Mutator family SMB554_RS09605 PF00753 Metallo-beta-lactamase superfamily SMB554_RS09605 PF04273 Putative phosphatase (DUF442) SMB554_RS09615 PF01037 Lrp/AsnC ligand binding domain SMB554_RS09655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS09655 PF03466 LysR substrate binding domain SMB554_RS09705 PF00313 'Cold-shock' DNA-binding domain SMB554_RS09740 PF02272 DHHA1 domain SMB554_RS09740 PF01368 DHH family SMB554_RS09740 PF17768 RecJ OB domain SMB554_RS09745 PF00742 Homoserine dehydrogenase SMB554_RS09745 PF03447 Homoserine dehydrogenase, NAD binding domain SMB554_RS09745 PF01842 ACT domain SMB554_RS09750 PF00155 Aminotransferase class I and II SMB554_RS09760 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus SMB554_RS09765 PF03749 Sugar fermentation stimulation protein RE domain SMB554_RS09765 PF17746 SfsA N-terminal OB domain SMB554_RS09770 PF00557 Metallopeptidase family M24 SMB554_RS09775 PF04002 RadC-like JAB domain SMB554_RS09780 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS09780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS09785 PF01521 Iron-sulphur cluster biosynthesis SMB554_RS09790 PF01883 Iron-sulfur cluster assembly protein SMB554_RS09795 PF00266 Aminotransferase class-V SMB554_RS09800 PF01458 Uncharacterized protein family (UPF0051) SMB554_RS09805 PF00005 ABC transporter SMB554_RS09810 PF01458 Uncharacterized protein family (UPF0051) SMB554_RS09815 PF00266 Aminotransferase class-V SMB554_RS09820 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SMB554_RS09830 PF03702 Anhydro-N-acetylmuramic acid kinase SMB554_RS09835 PF00579 tRNA synthetases class I (W and Y) SMB554_RS09845 PF00578 AhpC/TSA family SMB554_RS09850 PF04305 Protein of unknown function (DUF455) SMB554_RS09855 PF01551 Peptidase family M23 SMB554_RS09855 PF01476 LysM domain SMB554_RS09855 PF08525 Opacity-associated protein A N-terminal motif SMB554_RS09860 PF00270 DEAD/DEAH box helicase SMB554_RS09860 PF00271 Helicase conserved C-terminal domain SMB554_RS09875 PF12804 MobA-like NTP transferase domain SMB554_RS09875 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS09880 PF02625 XdhC and CoxI family SMB554_RS09880 PF13478 XdhC Rossmann domain SMB554_RS09895 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMB554_RS09895 PF05362 Lon protease (S16) C-terminal proteolytic domain SMB554_RS09895 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS09900 PF01613 Flavin reductase like domain SMB554_RS09910 PF03576 Peptidase family S58 SMB554_RS09915 PF00834 Ribulose-phosphate 3 epimerase family SMB554_RS09930 PF00206 Lyase SMB554_RS09930 PF10397 Adenylosuccinate lyase C-terminus SMB554_RS09955 PF03466 LysR substrate binding domain SMB554_RS09955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS09960 PF02585 GlcNAc-PI de-N-acetylase SMB554_RS09965 PF03737 Aldolase/RraA SMB554_RS09975 PF01970 Tripartite tricarboxylate transporter TctA family SMB554_RS09990 PF04303 PrpF protein SMB554_RS10000 PF01259 SAICAR synthetase SMB554_RS10005 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase SMB554_RS10025 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS10025 PF00155 Aminotransferase class I and II SMB554_RS10035 PF02769 AIR synthase related protein, C-terminal domain SMB554_RS10035 PF00586 AIR synthase related protein, N-terminal domain SMB554_RS10035 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SMB554_RS10050 PF00462 Glutaredoxin SMB554_RS10055 PF07690 Major Facilitator Superfamily SMB554_RS10065 PF00459 Inositol monophosphatase family SMB554_RS10070 PF01171 PP-loop family SMB554_RS10075 PF04960 Glutaminase SMB554_RS10080 PF00163 Ribosomal protein S4/S9 N-terminal domain SMB554_RS10080 PF01479 S4 domain SMB554_RS10090 PF01177 Asp/Glu/Hydantoin racemase SMB554_RS10095 PF00588 SpoU rRNA Methylase family SMB554_RS10105 PF00180 Isocitrate/isopropylmalate dehydrogenase SMB554_RS10110 PF14525 AraC-binding-like domain SMB554_RS10110 PF12833 Helix-turn-helix domain SMB554_RS10135 PF02272 DHHA1 domain SMB554_RS10135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SMB554_RS10135 PF01411 tRNA synthetases class II (A) SMB554_RS10140 PF00154 recA bacterial DNA recombination protein SMB554_RS10145 PF00294 pfkB family carbohydrate kinase SMB554_RS10150 PF04227 Indigoidine synthase A like protein SMB554_RS10155 PF00072 Response regulator receiver domain SMB554_RS10155 PF08448 PAS fold SMB554_RS10155 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS10155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS10155 PF13188 PAS domain SMB554_RS10165 PF01258 Prokaryotic dksA/traR C4-type zinc finger SMB554_RS10180 PF05128 Domain of unknown function (DUF697) SMB554_RS10190 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SMB554_RS10195 PF02152 Dihydroneopterin aldolase SMB554_RS10200 PF00809 Pterin binding enzyme SMB554_RS10215 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS10235 PF02167 Cytochrome C1 family SMB554_RS10235 PF00033 Cytochrome b/b6/petB SMB554_RS10235 PF00032 Cytochrome b(C-terminal)/b6/petD SMB554_RS10240 PF00032 Cytochrome b(C-terminal)/b6/petD SMB554_RS10240 PF00033 Cytochrome b/b6/petB SMB554_RS10245 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SMB554_RS10245 PF00355 Rieske [2Fe-2S] domain SMB554_RS10250 PF00664 ABC transporter transmembrane region SMB554_RS10250 PF00005 ABC transporter SMB554_RS10255 PF00664 ABC transporter transmembrane region SMB554_RS10255 PF00005 ABC transporter SMB554_RS10260 PF00588 SpoU rRNA Methylase family SMB554_RS10265 PF03358 NADPH-dependent FMN reductase SMB554_RS10270 PF00376 MerR family regulatory protein SMB554_RS10270 PF09278 MerR, DNA binding SMB554_RS10285 PF01218 Coproporphyrinogen III oxidase SMB554_RS10295 PF05973 Phage derived protein Gp49-like (DUF891) SMB554_RS10300 PF02470 MlaD protein SMB554_RS10300 PF03886 ABC-type transport auxiliary lipoprotein component SMB554_RS10310 PF00005 ABC transporter SMB554_RS10315 PF02405 Permease MlaE SMB554_RS10320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS10320 PF13378 Enolase C-terminal domain-like SMB554_RS10325 PF07690 Major Facilitator Superfamily SMB554_RS10340 PF01515 Phosphate acetyl/butaryl transferase SMB554_RS10340 PF03949 Malic enzyme, NAD binding domain SMB554_RS10340 PF00390 Malic enzyme, N-terminal domain SMB554_RS10345 PF03472 Autoinducer binding domain SMB554_RS10345 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS10350 PF00765 Autoinducer synthase SMB554_RS10360 PF00881 Nitroreductase family SMB554_RS10380 PF07676 WD40-like Beta Propeller Repeat SMB554_RS10385 PF02540 NAD synthase SMB554_RS10385 PF00795 Carbon-nitrogen hydrolase SMB554_RS10390 PF00884 Sulfatase SMB554_RS10415 PF01474 Class-II DAHP synthetase family SMB554_RS10420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS10420 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS10430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SMB554_RS10435 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS10440 PF03734 L,D-transpeptidase catalytic domain SMB554_RS10440 PF01471 Putative peptidoglycan binding domain SMB554_RS10445 PF10415 Fumarase C C-terminus SMB554_RS10445 PF00206 Lyase SMB554_RS10455 PF12697 Alpha/beta hydrolase family SMB554_RS10460 PF01047 MarR family SMB554_RS10470 PF06463 Molybdenum Cofactor Synthesis C SMB554_RS10470 PF04055 Radical SAM superfamily SMB554_RS10475 PF00892 EamA-like transporter family SMB554_RS10480 PF12804 MobA-like NTP transferase domain SMB554_RS10485 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SMB554_RS10490 PF01389 OmpA-like transmembrane domain SMB554_RS10490 PF00691 OmpA family SMB554_RS10495 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS10500 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS10505 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS10510 PF06233 Usg-like family SMB554_RS10525 PF08241 Methyltransferase domain SMB554_RS10530 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS10530 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS10540 PF13404 AsnC-type helix-turn-helix domain SMB554_RS10540 PF01037 Lrp/AsnC ligand binding domain SMB554_RS10545 PF03167 Uracil DNA glycosylase superfamily SMB554_RS10555 PF13188 PAS domain SMB554_RS10555 PF00989 PAS fold SMB554_RS10555 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS10560 PF01219 Prokaryotic diacylglycerol kinase SMB554_RS10565 PF02277 Phosphoribosyltransferase SMB554_RS10570 PF02654 Cobalamin-5-phosphate synthase SMB554_RS10585 PF01061 ABC-2 type transporter SMB554_RS10590 PF00005 ABC transporter SMB554_RS10630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS10630 PF08269 Cache domain SMB554_RS10635 PF03061 Thioesterase superfamily SMB554_RS10650 PF04851 Type III restriction enzyme, res subunit SMB554_RS10650 PF17757 UvrB interaction domain SMB554_RS10650 PF12344 Ultra-violet resistance protein B SMB554_RS10650 PF02151 UvrB/uvrC motif SMB554_RS10650 PF00271 Helicase conserved C-terminal domain SMB554_RS10660 PF00226 DnaJ domain SMB554_RS10660 PF01556 DnaJ C terminal domain SMB554_RS10660 PF00684 DnaJ central domain SMB554_RS10675 PF00313 'Cold-shock' DNA-binding domain SMB554_RS10680 PF01207 Dihydrouridine synthase (Dus) SMB554_RS10710 PF01557 Fumarylacetoacetate (FAA) hydrolase family SMB554_RS10720 PF01475 Ferric uptake regulator family SMB554_RS10725 PF00950 ABC 3 transport family SMB554_RS10730 PF00005 ABC transporter SMB554_RS10735 PF01297 Zinc-uptake complex component A periplasmic SMB554_RS10745 PF04616 Glycosyl hydrolases family 43 SMB554_RS10745 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SMB554_RS10755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS10760 PF00665 Integrase core domain SMB554_RS10770 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS10775 PF00248 Aldo/keto reductase family SMB554_RS10790 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain SMB554_RS10790 PF00703 Glycosyl hydrolases family 2 SMB554_RS10790 PF02837 Glycosyl hydrolases family 2, sugar binding domain SMB554_RS10795 PF17912 MalK OB fold domain SMB554_RS10795 PF00005 ABC transporter SMB554_RS10800 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS10805 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS10810 PF01547 Bacterial extracellular solute-binding protein SMB554_RS10825 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SMB554_RS10825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS10830 PF01235 Sodium:alanine symporter family SMB554_RS10835 PF12833 Helix-turn-helix domain SMB554_RS10855 PF03279 Bacterial lipid A biosynthesis acyltransferase SMB554_RS10860 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS10860 PF00107 Zinc-binding dehydrogenase SMB554_RS10865 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS10865 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS10875 PF07977 FabA-like domain SMB554_RS10880 PF00550 Phosphopantetheine attachment site SMB554_RS10885 PF03186 CobD/Cbib protein SMB554_RS10890 PF00155 Aminotransferase class I and II SMB554_RS10895 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMB554_RS10895 PF07685 CobB/CobQ-like glutamine amidotransferase domain SMB554_RS10900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS10905 PF01890 Cobalamin synthesis G C-terminus SMB554_RS10910 PF01925 Sulfite exporter TauE/SafE SMB554_RS10915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS10915 PF00005 ABC transporter SMB554_RS10925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS10930 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS10935 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS10935 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS10950 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SMB554_RS10955 PF02514 CobN/Magnesium Chelatase SMB554_RS10960 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMB554_RS10960 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMB554_RS10965 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SMB554_RS10975 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS10975 PF00072 Response regulator receiver domain SMB554_RS10980 PF00561 alpha/beta hydrolase fold SMB554_RS10985 PF07685 CobB/CobQ-like glutamine amidotransferase domain SMB554_RS11000 PF00571 CBS domain SMB554_RS11000 PF00005 ABC transporter SMB554_RS11005 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMB554_RS11025 PF02574 Homocysteine S-methyltransferase SMB554_RS11025 PF00809 Pterin binding enzyme SMB554_RS11025 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMB554_RS11025 PF02310 B12 binding domain SMB554_RS11025 PF02607 B12 binding domain SMB554_RS11030 PF01757 Acyltransferase family SMB554_RS11035 PF00155 Aminotransferase class I and II SMB554_RS11045 PF09992 Phosphodiester glycosidase SMB554_RS11055 PF06253 Trimethylamine methyltransferase (MTTB) SMB554_RS11060 PF02607 B12 binding domain SMB554_RS11060 PF02310 B12 binding domain SMB554_RS11075 PF02911 Formyl transferase, C-terminal domain SMB554_RS11075 PF00551 Formyl transferase SMB554_RS11090 PF07886 BA14K-like protein SMB554_RS11110 PF02607 B12 binding domain SMB554_RS11110 PF02574 Homocysteine S-methyltransferase SMB554_RS11110 PF00809 Pterin binding enzyme SMB554_RS11110 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMB554_RS11110 PF02310 B12 binding domain SMB554_RS11135 PF01022 Bacterial regulatory protein, arsR family SMB554_RS11140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS11140 PF03466 LysR substrate binding domain SMB554_RS11155 PF00561 alpha/beta hydrolase fold SMB554_RS11165 PF16916 Dimerisation domain of Zinc Transporter SMB554_RS11165 PF01545 Cation efflux family SMB554_RS11170 PF02583 Metal-sensitive transcriptional repressor SMB554_RS11175 PF12833 Helix-turn-helix domain SMB554_RS11175 PF01965 DJ-1/PfpI family SMB554_RS11180 PF00072 Response regulator receiver domain SMB554_RS11215 PF03741 Integral membrane protein TerC family SMB554_RS11220 PF00924 Mechanosensitive ion channel SMB554_RS11220 PF12795 Mechanosensitive ion channel porin domain SMB554_RS11220 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMB554_RS11235 PF03600 Citrate transporter SMB554_RS11235 PF02080 TrkA-C domain SMB554_RS11270 PF00535 Glycosyl transferase family 2 SMB554_RS11335 PF07886 BA14K-like protein SMB554_RS11385 PF07660 Secretin and TonB N terminus short domain SMB554_RS11385 PF00593 TonB dependent receptor SMB554_RS11385 PF07715 TonB-dependent Receptor Plug Domain SMB554_RS11395 PF00005 ABC transporter SMB554_RS11395 PF00664 ABC transporter transmembrane region SMB554_RS11400 PF00529 HlyD membrane-fusion protein of T1SS SMB554_RS11400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS11430 PF02567 Phenazine biosynthesis-like protein SMB554_RS11460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS11470 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS11475 PF07995 Glucose / Sorbosone dehydrogenase SMB554_RS11480 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS11485 PF00091 Tubulin/FtsZ family, GTPase domain SMB554_RS11485 PF12327 FtsZ family, C-terminal domain SMB554_RS11500 PF08402 TOBE domain SMB554_RS11500 PF00005 ABC transporter SMB554_RS11505 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS11520 PF00313 'Cold-shock' DNA-binding domain SMB554_RS11530 PF01165 Ribosomal protein S21 SMB554_RS11540 PF00248 Aldo/keto reductase family SMB554_RS11545 PF01609 Transposase DDE domain SMB554_RS11545 PF13808 DDE_Tnp_1-associated SMB554_RS11550 PF00155 Aminotransferase class I and II SMB554_RS11560 PF17969 L,D-transpeptidase C-terminal domain SMB554_RS11560 PF03734 L,D-transpeptidase catalytic domain SMB554_RS11560 PF01476 LysM domain SMB554_RS11570 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS11580 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SMB554_RS11580 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SMB554_RS11590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS11595 PF12704 MacB-like periplasmic core domain SMB554_RS11595 PF02687 FtsX-like permease family SMB554_RS11595 PF00005 ABC transporter SMB554_RS11615 PF01636 Phosphotransferase enzyme family SMB554_RS11625 PF07690 Major Facilitator Superfamily SMB554_RS11640 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS11645 PF01037 Lrp/AsnC ligand binding domain SMB554_RS11650 PF01177 Asp/Glu/Hydantoin racemase SMB554_RS11655 PF01638 HxlR-like helix-turn-helix SMB554_RS11660 PF05368 NmrA-like family SMB554_RS11670 PF00155 Aminotransferase class I and II SMB554_RS11670 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS11675 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SMB554_RS11715 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SMB554_RS11720 PF13191 AAA ATPase domain SMB554_RS11720 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS11725 PF01734 Patatin-like phospholipase SMB554_RS11730 PF14490 Helix-hairpin-helix containing domain SMB554_RS11730 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain SMB554_RS11730 PF13538 UvrD-like helicase C-terminal domain SMB554_RS11735 PF05145 Transition state regulatory protein AbrB SMB554_RS11755 PF04542 Sigma-70 region 2 SMB554_RS11755 PF08281 Sigma-70, region 4 SMB554_RS11770 PF02211 Nitrile hydratase beta subunit SMB554_RS11775 PF02979 Nitrile hydratase, alpha chain SMB554_RS11785 PF08241 Methyltransferase domain SMB554_RS11795 PF00313 'Cold-shock' DNA-binding domain SMB554_RS11800 PF00248 Aldo/keto reductase family SMB554_RS11805 PF10369 Small subunit of acetolactate synthase SMB554_RS11810 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS11810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS11810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS11840 PF13302 Acetyltransferase (GNAT) domain SMB554_RS11845 PF13180 PDZ domain SMB554_RS11860 PF01145 SPFH domain / Band 7 family SMB554_RS11865 PF01145 SPFH domain / Band 7 family SMB554_RS11870 PF00186 Dihydrofolate reductase SMB554_RS11875 PF13417 Glutathione S-transferase, N-terminal domain SMB554_RS11875 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS11880 PF00303 Thymidylate synthase SMB554_RS11930 PF01609 Transposase DDE domain SMB554_RS11940 PF01565 FAD binding domain SMB554_RS11940 PF02913 FAD linked oxidases, C-terminal domain SMB554_RS11950 PF00873 AcrB/AcrD/AcrF family SMB554_RS11955 PF13533 Biotin-lipoyl like SMB554_RS11960 PF04199 Putative cyclase SMB554_RS11970 PF00580 UvrD/REP helicase N-terminal domain SMB554_RS11970 PF13361 UvrD-like helicase C-terminal domain SMB554_RS11980 PF01738 Dienelactone hydrolase family SMB554_RS11980 PF00156 Phosphoribosyl transferase domain SMB554_RS11985 PF17151 Periplasmic sensor domain SMB554_RS11985 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS12005 PF01584 CheW-like domain SMB554_RS12010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS12010 PF00672 HAMP domain SMB554_RS12020 PF02630 SCO1/SenC SMB554_RS12045 PF01321 Creatinase/Prolidase N-terminal domain SMB554_RS12045 PF00557 Metallopeptidase family M24 SMB554_RS12065 PF02548 Ketopantoate hydroxymethyltransferase SMB554_RS12070 PF02569 Pantoate-beta-alanine ligase SMB554_RS12080 PF03120 NAD-dependent DNA ligase OB-fold domain SMB554_RS12080 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SMB554_RS12080 PF01653 NAD-dependent DNA ligase adenylation domain SMB554_RS12080 PF00533 BRCA1 C Terminus (BRCT) domain SMB554_RS12080 PF12826 Helix-hairpin-helix motif SMB554_RS12085 PF02463 RecF/RecN/SMC N terminal domain SMB554_RS12090 PF13525 Outer membrane lipoprotein SMB554_RS12095 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SMB554_RS12100 PF00091 Tubulin/FtsZ family, GTPase domain SMB554_RS12100 PF12327 FtsZ family, C-terminal domain SMB554_RS12105 PF02491 SHS2 domain inserted in FTSA SMB554_RS12110 PF03799 Cell division protein FtsQ SMB554_RS12110 PF08478 POTRA domain, FtsQ-type SMB554_RS12115 PF01820 D-ala D-ala ligase N-terminus SMB554_RS12115 PF07478 D-ala D-ala ligase C-terminus SMB554_RS12120 PF00230 Major intrinsic protein SMB554_RS12125 PF07690 Major Facilitator Superfamily SMB554_RS12125 PF00083 Sugar (and other) transporter SMB554_RS12130 PF01565 FAD binding domain SMB554_RS12130 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SMB554_RS12135 PF01225 Mur ligase family, catalytic domain SMB554_RS12135 PF02875 Mur ligase family, glutamate ligase domain SMB554_RS12135 PF08245 Mur ligase middle domain SMB554_RS12140 PF03033 Glycosyltransferase family 28 N-terminal domain SMB554_RS12140 PF04101 Glycosyltransferase family 28 C-terminal domain SMB554_RS12145 PF01098 Cell cycle protein SMB554_RS12150 PF08245 Mur ligase middle domain SMB554_RS12155 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SMB554_RS12155 PF00953 Glycosyl transferase family 4 SMB554_RS12160 PF08245 Mur ligase middle domain SMB554_RS12160 PF02875 Mur ligase family, glutamate ligase domain SMB554_RS12160 PF01225 Mur ligase family, catalytic domain SMB554_RS12165 PF01225 Mur ligase family, catalytic domain SMB554_RS12165 PF02875 Mur ligase family, glutamate ligase domain SMB554_RS12165 PF08245 Mur ligase middle domain SMB554_RS12170 PF03717 Penicillin-binding Protein dimerisation domain SMB554_RS12170 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS12180 PF01795 MraW methylase family SMB554_RS12185 PF02381 MraZ protein, putative antitoxin-like SMB554_RS12205 PF01510 N-acetylmuramoyl-L-alanine amidase SMB554_RS12210 PF05099 Tellurite resistance protein TerB SMB554_RS12210 PF00226 DnaJ domain SMB554_RS12215 PF00365 Phosphofructokinase SMB554_RS12220 PF01810 LysE type translocator SMB554_RS12245 PF01183 Glycosyl hydrolases family 25 SMB554_RS12265 PF02219 Methylenetetrahydrofolate reductase SMB554_RS12270 PF03551 Transcriptional regulator PadR-like family SMB554_RS12270 PF13847 Methyltransferase domain SMB554_RS12275 PF12848 ABC transporter SMB554_RS12275 PF00005 ABC transporter SMB554_RS12285 PF12697 Alpha/beta hydrolase family SMB554_RS12295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS12295 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS12295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS12315 PF01476 LysM domain SMB554_RS12315 PF03734 L,D-transpeptidase catalytic domain SMB554_RS12320 PF01266 FAD dependent oxidoreductase SMB554_RS12325 PF07015 VirC1 protein SMB554_RS12330 PF00465 Iron-containing alcohol dehydrogenase SMB554_RS12335 PF00171 Aldehyde dehydrogenase family SMB554_RS12340 PF03951 Glutamine synthetase, beta-Grasp domain SMB554_RS12340 PF00120 Glutamine synthetase, catalytic domain SMB554_RS12355 PF01380 SIS domain SMB554_RS12355 PF01418 Helix-turn-helix domain, rpiR family SMB554_RS12375 PF08402 TOBE domain SMB554_RS12375 PF00005 ABC transporter SMB554_RS12380 PF00885 6,7-dimethyl-8-ribityllumazine synthase SMB554_RS12390 PF07715 TonB-dependent Receptor Plug Domain SMB554_RS12390 PF00593 TonB dependent receptor SMB554_RS12395 PF00872 Transposase, Mutator family SMB554_RS12400 PF02502 Ribose/Galactose Isomerase SMB554_RS12405 PF00121 Triosephosphate isomerase SMB554_RS12410 PF08220 DeoR-like helix-turn-helix domain SMB554_RS12410 PF00455 DeoR C terminal sensor domain SMB554_RS12415 PF01261 Xylose isomerase-like TIM barrel SMB554_RS12425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS12435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMB554_RS12435 PF01266 FAD dependent oxidoreductase SMB554_RS12440 PF00596 Class II Aldolase and Adducin N-terminal domain SMB554_RS12445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS12445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS12445 PF01842 ACT domain SMB554_RS12450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS12450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS12455 PF17912 MalK OB fold domain SMB554_RS12455 PF00005 ABC transporter SMB554_RS12460 PF03459 TOBE domain SMB554_RS12460 PF17912 MalK OB fold domain SMB554_RS12460 PF00005 ABC transporter SMB554_RS12465 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12470 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12475 PF01547 Bacterial extracellular solute-binding protein SMB554_RS12480 PF04198 Putative sugar-binding domain SMB554_RS12485 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS12485 PF00072 Response regulator receiver domain SMB554_RS12490 PF08402 TOBE domain SMB554_RS12490 PF00005 ABC transporter SMB554_RS12500 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12505 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12515 PF12833 Helix-turn-helix domain SMB554_RS12515 PF14525 AraC-binding-like domain SMB554_RS12520 PF05853 beta-keto acid cleavage enzyme SMB554_RS12525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMB554_RS12525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMB554_RS12530 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS12530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS12530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS12540 PF13607 Succinyl-CoA ligase like flavodoxin domain SMB554_RS12540 PF13380 CoA binding domain SMB554_RS12545 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS12550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS12555 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12560 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS12560 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12565 PF00005 ABC transporter SMB554_RS12565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS12575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS12580 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SMB554_RS12580 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SMB554_RS12590 PF07859 alpha/beta hydrolase fold SMB554_RS12595 PF03466 LysR substrate binding domain SMB554_RS12595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS12600 PF13416 Bacterial extracellular solute-binding protein SMB554_RS12605 PF08402 TOBE domain SMB554_RS12605 PF00005 ABC transporter SMB554_RS12610 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12615 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS12620 PF00171 Aldehyde dehydrogenase family SMB554_RS12625 PF07715 TonB-dependent Receptor Plug Domain SMB554_RS12625 PF00593 TonB dependent receptor SMB554_RS12650 PF01266 FAD dependent oxidoreductase SMB554_RS12650 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS12650 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS12650 PF16350 FAD dependent oxidoreductase central domain SMB554_RS12655 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS12655 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS12655 PF16350 FAD dependent oxidoreductase central domain SMB554_RS12655 PF01266 FAD dependent oxidoreductase SMB554_RS12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS12660 PF03466 LysR substrate binding domain SMB554_RS12670 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS12680 PF08361 MAATS-type transcriptional repressor, C-terminal region SMB554_RS12680 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS12685 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS12710 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SMB554_RS12730 PF02522 Aminoglycoside 3-N-acetyltransferase SMB554_RS12750 PF01070 FMN-dependent dehydrogenase SMB554_RS12790 PF03796 DnaB-like helicase C terminal domain SMB554_RS12800 PF03062 MBOAT, membrane-bound O-acyltransferase family SMB554_RS12835 PF04402 Protein of unknown function (DUF541) SMB554_RS12850 PF01894 Uncharacterised protein family UPF0047 SMB554_RS12855 PF07237 Protein of unknown function (DUF1428) SMB554_RS12875 PF00140 Sigma-70 factor, region 1.2 SMB554_RS12875 PF04546 Sigma-70, non-essential region SMB554_RS12875 PF03979 Sigma-70 factor, region 1.1 SMB554_RS12875 PF04542 Sigma-70 region 2 SMB554_RS12875 PF04539 Sigma-70 region 3 SMB554_RS12875 PF04545 Sigma-70, region 4 SMB554_RS12880 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS12880 PF00107 Zinc-binding dehydrogenase SMB554_RS12885 PF00155 Aminotransferase class I and II SMB554_RS12890 PF00271 Helicase conserved C-terminal domain SMB554_RS12890 PF00270 DEAD/DEAH box helicase SMB554_RS12890 PF09382 RQC domain SMB554_RS12890 PF00570 HRDC domain SMB554_RS12890 PF16124 RecQ zinc-binding SMB554_RS12895 PF08275 DNA primase catalytic core, N-terminal domain SMB554_RS12895 PF01807 CHC2 zinc finger SMB554_RS12895 PF13662 Toprim domain SMB554_RS12905 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SMB554_RS12905 PF00117 Glutamine amidotransferase class-I SMB554_RS12910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS12910 PF03466 LysR substrate binding domain SMB554_RS12920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS12920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS12930 PF00155 Aminotransferase class I and II SMB554_RS12945 PF07995 Glucose / Sorbosone dehydrogenase SMB554_RS12955 PF00313 'Cold-shock' DNA-binding domain SMB554_RS12965 PF00753 Metallo-beta-lactamase superfamily SMB554_RS12985 PF12802 MarR family SMB554_RS12990 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS12990 PF00072 Response regulator receiver domain SMB554_RS12995 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS12995 PF16527 Two-component sensor protein CpxA, periplasmic domain SMB554_RS12995 PF00672 HAMP domain SMB554_RS12995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS13000 PF01588 Putative tRNA binding domain SMB554_RS13005 PF14748 Pyrroline-5-carboxylate reductase dimerisation SMB554_RS13005 PF03807 NADP oxidoreductase coenzyme F420-dependent SMB554_RS13020 PF01790 Prolipoprotein diacylglyceryl transferase SMB554_RS13030 PF02578 Multi-copper polyphenol oxidoreductase laccase SMB554_RS13045 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SMB554_RS13045 PF14572 Phosphoribosyl synthetase-associated domain SMB554_RS13060 PF00171 Aldehyde dehydrogenase family SMB554_RS13065 PF02954 Bacterial regulatory protein, Fis family SMB554_RS13065 PF13426 PAS domain SMB554_RS13065 PF00158 Sigma-54 interaction domain SMB554_RS13070 PF03594 Benzoate membrane transport protein SMB554_RS13075 PF01386 Ribosomal L25p family SMB554_RS13075 PF14693 Ribosomal protein TL5, C-terminal domain SMB554_RS13080 PF01195 Peptidyl-tRNA hydrolase SMB554_RS13085 PF02617 ATP-dependent Clp protease adaptor protein ClpS SMB554_RS13090 PF01926 50S ribosome-binding GTPase SMB554_RS13090 PF06071 Protein of unknown function (DUF933) SMB554_RS13105 PF00156 Phosphoribosyl transferase domain SMB554_RS13115 PF01743 Poly A polymerase head domain SMB554_RS13115 PF13735 tRNA nucleotidyltransferase domain 2 putative SMB554_RS13115 PF12627 Probable RNA and SrmB- binding site of polymerase A SMB554_RS13120 PF00293 NUDIX domain SMB554_RS13130 PF17863 AAA lid domain SMB554_RS13130 PF07726 ATPase family associated with various cellular activities (AAA) SMB554_RS13155 PF13409 Glutathione S-transferase, N-terminal domain SMB554_RS13165 PF02661 Fic/DOC family SMB554_RS13170 PF00293 NUDIX domain SMB554_RS13180 PF04542 Sigma-70 region 2 SMB554_RS13180 PF08281 Sigma-70, region 4 SMB554_RS13190 PF01850 PIN domain SMB554_RS13195 PF07704 Rv0623-like transcription factor SMB554_RS13200 PF08502 LeuA allosteric (dimerisation) domain SMB554_RS13200 PF00682 HMGL-like SMB554_RS13210 PF00574 Clp protease SMB554_RS13220 PF01636 Phosphotransferase enzyme family SMB554_RS13225 PF14489 QueF-like protein SMB554_RS13230 PF01545 Cation efflux family SMB554_RS13230 PF16916 Dimerisation domain of Zinc Transporter SMB554_RS13235 PF04715 Anthranilate synthase component I, N terminal region SMB554_RS13235 PF00117 Glutamine amidotransferase class-I SMB554_RS13235 PF00425 chorismate binding enzyme SMB554_RS13240 PF00593 TonB dependent receptor SMB554_RS13240 PF04886 PT repeat SMB554_RS13240 PF07715 TonB-dependent Receptor Plug Domain SMB554_RS13250 PF01268 Formate--tetrahydrofolate ligase SMB554_RS13265 PF01609 Transposase DDE domain SMB554_RS13270 PF04480 Protein of unknown function (DUF559) SMB554_RS13290 PF00265 Thymidine kinase SMB554_RS13295 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMB554_RS13300 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13305 PF00005 ABC transporter SMB554_RS13305 PF00571 CBS domain SMB554_RS13315 PF01022 Bacterial regulatory protein, arsR family SMB554_RS13325 PF00202 Aminotransferase class-III SMB554_RS13330 PF01979 Amidohydrolase family SMB554_RS13330 PF13382 Adenine deaminase C-terminal domain SMB554_RS13335 PF00128 Alpha amylase, catalytic domain SMB554_RS13340 PF00294 pfkB family carbohydrate kinase SMB554_RS13345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS13345 PF00005 ABC transporter SMB554_RS13350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS13350 PF00005 ABC transporter SMB554_RS13355 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13355 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS13360 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS13370 PF01244 Membrane dipeptidase (Peptidase family M19) SMB554_RS13375 PF00893 Small Multidrug Resistance protein SMB554_RS13395 PF01152 Bacterial-like globin SMB554_RS13445 PF01497 Periplasmic binding protein SMB554_RS13450 PF01032 FecCD transport family SMB554_RS13455 PF00005 ABC transporter SMB554_RS13470 PF07536 HWE histidine kinase SMB554_RS13470 PF13426 PAS domain SMB554_RS13470 PF08447 PAS fold SMB554_RS13475 PF08281 Sigma-70, region 4 SMB554_RS13475 PF04542 Sigma-70 region 2 SMB554_RS13485 PF00072 Response regulator receiver domain SMB554_RS13490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS13490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS13495 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS13500 PF08125 Mannitol dehydrogenase C-terminal domain SMB554_RS13500 PF01232 Mannitol dehydrogenase Rossmann domain SMB554_RS13510 PF00005 ABC transporter SMB554_RS13510 PF08402 TOBE domain SMB554_RS13515 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13520 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13530 PF04198 Putative sugar-binding domain SMB554_RS13535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMB554_RS13535 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS13540 PF01180 Dihydroorotate dehydrogenase SMB554_RS13545 PF00107 Zinc-binding dehydrogenase SMB554_RS13545 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS13550 PF03466 LysR substrate binding domain SMB554_RS13550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS13555 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS13565 PF08362 YcdC-like protein, C-terminal region SMB554_RS13565 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS13570 PF01546 Peptidase family M20/M25/M40 SMB554_RS13570 PF07687 Peptidase dimerisation domain SMB554_RS13575 PF01979 Amidohydrolase family SMB554_RS13585 PF00005 ABC transporter SMB554_RS13595 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13600 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13615 PF00873 AcrB/AcrD/AcrF family SMB554_RS13620 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMB554_RS13625 PF01730 UreF SMB554_RS13630 PF05194 UreE urease accessory protein, C-terminal domain SMB554_RS13630 PF02814 UreE urease accessory protein, N-terminal domain SMB554_RS13640 PF08534 Redoxin SMB554_RS13660 PF01979 Amidohydrolase family SMB554_RS13660 PF00449 Urease alpha-subunit, N-terminal domain SMB554_RS13670 PF07007 Lysozyme inhibitor LprI SMB554_RS13675 PF00699 Urease beta subunit SMB554_RS13680 PF06906 Protein of unknown function (DUF1272) SMB554_RS13685 PF00547 Urease, gamma subunit SMB554_RS13690 PF01774 UreD urease accessory protein SMB554_RS13695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS13695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS13700 PF00561 alpha/beta hydrolase fold SMB554_RS13705 PF01047 MarR family SMB554_RS13710 PF13458 Periplasmic binding protein SMB554_RS13720 PF00005 ABC transporter SMB554_RS13725 PF00005 ABC transporter SMB554_RS13725 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMB554_RS13730 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS13730 PF11862 Domain of unknown function (DUF3382) SMB554_RS13735 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS13740 PF00459 Inositol monophosphatase family SMB554_RS13745 PF00072 Response regulator receiver domain SMB554_RS13750 PF13545 Crp-like helix-turn-helix domain SMB554_RS13750 PF00027 Cyclic nucleotide-binding domain SMB554_RS13755 PF00106 short chain dehydrogenase SMB554_RS13760 PF01738 Dienelactone hydrolase family SMB554_RS13780 PF03358 NADPH-dependent FMN reductase SMB554_RS13785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMB554_RS13790 PF00795 Carbon-nitrogen hydrolase SMB554_RS13800 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13805 PF00005 ABC transporter SMB554_RS13805 PF08402 TOBE domain SMB554_RS13815 PF00491 Arginase family SMB554_RS13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS13820 PF03466 LysR substrate binding domain SMB554_RS13825 PF00155 Aminotransferase class I and II SMB554_RS13835 PF00171 Aldehyde dehydrogenase family SMB554_RS13845 PF01266 FAD dependent oxidoreductase SMB554_RS13850 PF00120 Glutamine synthetase, catalytic domain SMB554_RS13860 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS13865 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS13875 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13880 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS13885 PF00005 ABC transporter SMB554_RS13885 PF17912 MalK OB fold domain SMB554_RS13890 PF00034 Cytochrome c SMB554_RS13895 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMB554_RS13900 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS13905 PF00510 Cytochrome c oxidase subunit III SMB554_RS13910 PF00510 Cytochrome c oxidase subunit III SMB554_RS13920 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS13920 PF01266 FAD dependent oxidoreductase SMB554_RS13920 PF16350 FAD dependent oxidoreductase central domain SMB554_RS13920 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS13930 PF00005 ABC transporter SMB554_RS13955 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS13955 PF07729 FCD domain SMB554_RS13965 PF00465 Iron-containing alcohol dehydrogenase SMB554_RS13980 PF06560 Glucose-6-phosphate isomerase (GPI) SMB554_RS13985 PF01081 KDPG and KHG aldolase SMB554_RS13995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS13995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS14000 PF12706 Beta-lactamase superfamily domain SMB554_RS14005 PF01418 Helix-turn-helix domain, rpiR family SMB554_RS14005 PF01380 SIS domain SMB554_RS14010 PF01791 DeoC/LacD family aldolase SMB554_RS14015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS14015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS14020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS14020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS14030 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS14035 PF00005 ABC transporter SMB554_RS14040 PF13407 Periplasmic binding protein domain SMB554_RS14050 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS14050 PF07702 UTRA domain SMB554_RS14055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS14055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS14060 PF02780 Transketolase, C-terminal domain SMB554_RS14060 PF00456 Transketolase, thiamine diphosphate binding domain SMB554_RS14060 PF02779 Transketolase, pyrimidine binding domain SMB554_RS14065 PF07690 Major Facilitator Superfamily SMB554_RS14075 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS14105 PF00120 Glutamine synthetase, catalytic domain SMB554_RS14105 PF03951 Glutamine synthetase, beta-Grasp domain SMB554_RS14110 PF01418 Helix-turn-helix domain, rpiR family SMB554_RS14110 PF01380 SIS domain SMB554_RS14120 PF00857 Isochorismatase family SMB554_RS14125 PF13458 Periplasmic binding protein SMB554_RS14130 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMB554_RS14130 PF00005 ABC transporter SMB554_RS14135 PF00005 ABC transporter SMB554_RS14140 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS14150 PF00857 Isochorismatase family SMB554_RS14155 PF00202 Aminotransferase class-III SMB554_RS14160 PF01979 Amidohydrolase family SMB554_RS14165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS14170 PF01979 Amidohydrolase family SMB554_RS14175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS14180 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS14185 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS14185 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS14190 PF01979 Amidohydrolase family SMB554_RS14195 PF01979 Amidohydrolase family SMB554_RS14200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS14200 PF00005 ABC transporter SMB554_RS14205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS14205 PF00005 ABC transporter SMB554_RS14210 PF07729 FCD domain SMB554_RS14210 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS14220 PF01177 Asp/Glu/Hydantoin racemase SMB554_RS14225 PF00355 Rieske [2Fe-2S] domain SMB554_RS14230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS14230 PF03466 LysR substrate binding domain SMB554_RS14235 PF10996 Beta-Casp domain SMB554_RS14235 PF00753 Metallo-beta-lactamase superfamily SMB554_RS14235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMB554_RS14275 PF04225 Opacity-associated protein A LysM-like domain SMB554_RS14275 PF01551 Peptidase family M23 SMB554_RS14280 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS14280 PF10431 C-terminal, D2-small domain, of ClpB protein SMB554_RS14280 PF02861 Clp amino terminal domain, pathogenicity island component SMB554_RS14280 PF17871 AAA lid domain SMB554_RS14280 PF07724 AAA domain (Cdc48 subfamily) SMB554_RS14295 PF17827 PrmC N-terminal domain SMB554_RS14295 PF05175 Methyltransferase small domain SMB554_RS14300 PF00472 RF-1 domain SMB554_RS14300 PF03462 PCRF domain SMB554_RS14305 PF01590 GAF domain SMB554_RS14305 PF05524 PEP-utilising enzyme, N-terminal SMB554_RS14305 PF02896 PEP-utilising enzyme, TIM barrel domain SMB554_RS14305 PF00391 PEP-utilising enzyme, mobile domain SMB554_RS14310 PF13840 ACT domain SMB554_RS14310 PF01842 ACT domain SMB554_RS14310 PF00696 Amino acid kinase family SMB554_RS14330 PF00795 Carbon-nitrogen hydrolase SMB554_RS14335 PF00462 Glutaredoxin SMB554_RS14340 PF00156 Phosphoribosyl transferase domain SMB554_RS14345 PF08241 Methyltransferase domain SMB554_RS14360 PF00293 NUDIX domain SMB554_RS14370 PF01960 ArgJ family SMB554_RS14375 PF00639 PPIC-type PPIASE domain SMB554_RS14380 PF07517 SecA DEAD-like domain SMB554_RS14380 PF01043 SecA preprotein cross-linking domain SMB554_RS14380 PF07516 SecA Wing and Scaffold domain SMB554_RS14380 PF02810 SEC-C motif SMB554_RS14385 PF07690 Major Facilitator Superfamily SMB554_RS14400 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS14400 PF00501 AMP-binding enzyme SMB554_RS14435 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMB554_RS14445 PF00106 short chain dehydrogenase SMB554_RS14455 PF01923 Cobalamin adenosyltransferase SMB554_RS14465 PF01012 Electron transfer flavoprotein domain SMB554_RS14470 PF01012 Electron transfer flavoprotein domain SMB554_RS14470 PF00766 Electron transfer flavoprotein FAD-binding domain SMB554_RS14475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMB554_RS14475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMB554_RS14480 PF08534 Redoxin SMB554_RS14485 PF14698 Argininosuccinate lyase C-terminal SMB554_RS14485 PF00206 Lyase SMB554_RS14495 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMB554_RS14495 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMB554_RS14505 PF01609 Transposase DDE domain SMB554_RS14510 PF00072 Response regulator receiver domain SMB554_RS14515 PF00156 Phosphoribosyl transferase domain SMB554_RS14525 PF00005 ABC transporter SMB554_RS14545 PF04752 ChaC-like protein SMB554_RS14555 PF02153 Prephenate dehydrogenase SMB554_RS14560 PF00155 Aminotransferase class I and II SMB554_RS14565 PF01209 ubiE/COQ5 methyltransferase family SMB554_RS14570 PF00753 Metallo-beta-lactamase superfamily SMB554_RS14570 PF16123 Hydroxyacylglutathione hydrolase C-terminus SMB554_RS14590 PF00830 Ribosomal L28 family SMB554_RS14595 PF02592 Putative vitamin uptake transporter SMB554_RS14605 PF11775 Cobalamin biosynthesis protein CobT VWA domain SMB554_RS14605 PF06213 Cobalamin biosynthesis protein CobT SMB554_RS14610 PF12556 Cobaltochelatase CobS subunit N terminal SMB554_RS14610 PF07728 AAA domain (dynein-related subfamily) SMB554_RS14610 PF08406 CbbQ/NirQ/NorQ C-terminal SMB554_RS14615 PF00226 DnaJ domain SMB554_RS14620 PF01722 BolA-like protein SMB554_RS14625 PF03471 Transporter associated domain SMB554_RS14625 PF00571 CBS domain SMB554_RS14625 PF01595 Cyclin M transmembrane N-terminal domain SMB554_RS14630 PF01761 3-dehydroquinate synthase SMB554_RS14635 PF01202 Shikimate kinase SMB554_RS14645 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMB554_RS14655 PF02899 Phage integrase, N-terminal SAM-like domain SMB554_RS14655 PF00589 Phage integrase family SMB554_RS14660 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SMB554_RS14665 PF03734 L,D-transpeptidase catalytic domain SMB554_RS14670 PF01206 Sulfurtransferase TusA SMB554_RS14675 PF01850 PIN domain SMB554_RS14680 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SMB554_RS14685 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMB554_RS14685 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMB554_RS14690 PF00768 D-alanyl-D-alanine carboxypeptidase SMB554_RS14690 PF07943 Penicillin-binding protein 5, C-terminal domain SMB554_RS14695 PF07687 Peptidase dimerisation domain SMB554_RS14695 PF01546 Peptidase family M20/M25/M40 SMB554_RS14700 PF01037 Lrp/AsnC ligand binding domain SMB554_RS14705 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS14705 PF00107 Zinc-binding dehydrogenase SMB554_RS14710 PF06719 AraC-type transcriptional regulator N-terminus SMB554_RS14710 PF12833 Helix-turn-helix domain SMB554_RS14715 PF01037 Lrp/AsnC ligand binding domain SMB554_RS14720 PF00202 Aminotransferase class-III SMB554_RS14725 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS14730 PF00202 Aminotransferase class-III SMB554_RS14735 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS14735 PF07702 UTRA domain SMB554_RS14740 PF01979 Amidohydrolase family SMB554_RS14750 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS14755 PF00571 CBS domain SMB554_RS14755 PF00005 ABC transporter SMB554_RS14760 PF00221 Aromatic amino acid lyase SMB554_RS14765 PF07670 Nucleoside recognition SMB554_RS14770 PF05962 HutD SMB554_RS14825 PF03472 Autoinducer binding domain SMB554_RS14825 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS14845 PF00072 Response regulator receiver domain SMB554_RS14845 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS14855 PF10090 Histidine phosphotransferase C-terminal domain SMB554_RS14870 PF00588 SpoU rRNA Methylase family SMB554_RS14880 PF00849 RNA pseudouridylate synthase SMB554_RS14885 PF00140 Sigma-70 factor, region 1.2 SMB554_RS14885 PF04545 Sigma-70, region 4 SMB554_RS14885 PF04542 Sigma-70 region 2 SMB554_RS14895 PF00709 Adenylosuccinate synthetase SMB554_RS14905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS14905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS14905 PF01842 ACT domain SMB554_RS14915 PF13505 Outer membrane protein beta-barrel domain SMB554_RS14930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMB554_RS14930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMB554_RS14930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMB554_RS14930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMB554_RS14935 PF01434 Peptidase family M41 SMB554_RS14935 PF06480 FtsH Extracellular SMB554_RS14935 PF17862 AAA+ lid domain SMB554_RS14935 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS14940 PF01171 PP-loop family SMB554_RS14950 PF00691 OmpA family SMB554_RS14955 PF04052 TolB amino-terminal domain SMB554_RS14955 PF07676 WD40-like Beta Propeller Repeat SMB554_RS14965 PF02472 Biopolymer transport protein ExbD/TolR SMB554_RS14970 PF01618 MotA/TolQ/ExbB proton channel family SMB554_RS14975 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS14975 PF01068 ATP dependent DNA ligase domain SMB554_RS14975 PF13298 DNA polymerase Ligase (LigD) SMB554_RS14980 PF03061 Thioesterase superfamily SMB554_RS14995 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS15000 PF00149 Calcineurin-like phosphoesterase SMB554_RS15005 PF05491 RuvB C-terminal winged helix domain SMB554_RS15005 PF17864 RuvB AAA lid domain SMB554_RS15005 PF05496 Holliday junction DNA helicase RuvB P-loop domain SMB554_RS15010 PF07499 RuvA, C-terminal domain SMB554_RS15010 PF01330 RuvA N terminal domain SMB554_RS15015 PF02075 Crossover junction endodeoxyribonuclease RuvC SMB554_RS15020 PF00296 Luciferase-like monooxygenase SMB554_RS15025 PF01709 Transcriptional regulator SMB554_RS15035 PF00873 AcrB/AcrD/AcrF family SMB554_RS15040 PF13533 Biotin-lipoyl like SMB554_RS15045 PF13277 YmdB-like protein SMB554_RS15080 PF02780 Transketolase, C-terminal domain SMB554_RS15080 PF00456 Transketolase, thiamine diphosphate binding domain SMB554_RS15080 PF02779 Transketolase, pyrimidine binding domain SMB554_RS15085 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SMB554_RS15085 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SMB554_RS15095 PF00162 Phosphoglycerate kinase SMB554_RS15100 PF00872 Transposase, Mutator family SMB554_RS15105 PF00274 Fructose-bisphosphate aldolase class-I SMB554_RS15110 PF02567 Phenazine biosynthesis-like protein SMB554_RS15115 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS15140 PF01197 Ribosomal protein L31 SMB554_RS15145 PF00005 ABC transporter SMB554_RS15145 PF00664 ABC transporter transmembrane region SMB554_RS15150 PF00691 OmpA family SMB554_RS15150 PF01389 OmpA-like transmembrane domain SMB554_RS15160 PF00459 Inositol monophosphatase family SMB554_RS15180 PF01022 Bacterial regulatory protein, arsR family SMB554_RS15195 PF00731 AIR carboxylase SMB554_RS15200 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SMB554_RS15200 PF02222 ATP-grasp domain SMB554_RS15205 PF00444 Ribosomal protein L36 SMB554_RS15215 PF00224 Pyruvate kinase, barrel domain SMB554_RS15215 PF02887 Pyruvate kinase, alpha/beta domain SMB554_RS15235 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) SMB554_RS15240 PF05951 Bacterial protein of unknown function (DUF882) SMB554_RS15245 PF00158 Sigma-54 interaction domain SMB554_RS15245 PF00072 Response regulator receiver domain SMB554_RS15245 PF02954 Bacterial regulatory protein, Fis family SMB554_RS15255 PF00425 chorismate binding enzyme SMB554_RS15255 PF04715 Anthranilate synthase component I, N terminal region SMB554_RS15265 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS15270 PF16653 Saccharopine dehydrogenase C-terminal domain SMB554_RS15270 PF03435 Saccharopine dehydrogenase NADP binding domain SMB554_RS15280 PF02872 5'-nucleotidase, C-terminal domain SMB554_RS15280 PF00149 Calcineurin-like phosphoesterase SMB554_RS15285 PF00762 Ferrochelatase SMB554_RS15290 PF16200 C-terminal region of band_7 SMB554_RS15290 PF01145 SPFH domain / Band 7 family SMB554_RS15295 PF01957 NfeD-like C-terminal, partner-binding SMB554_RS15305 PF00483 Nucleotidyl transferase SMB554_RS15310 PF13406 Transglycosylase SLT domain SMB554_RS15320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS15320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SMB554_RS15325 PF04898 Glutamate synthase central domain SMB554_RS15325 PF00310 Glutamine amidotransferases class-II SMB554_RS15325 PF01493 GXGXG motif SMB554_RS15325 PF01645 Conserved region in glutamate synthase SMB554_RS15330 PF01212 Beta-eliminating lyase SMB554_RS15335 PF13593 SBF-like CPA transporter family (DUF4137) SMB554_RS15340 PF00561 alpha/beta hydrolase fold SMB554_RS15345 PF03472 Autoinducer binding domain SMB554_RS15345 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS15350 PF00561 alpha/beta hydrolase fold SMB554_RS15355 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS15360 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS15360 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS15365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS15365 PF00005 ABC transporter SMB554_RS15370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS15375 PF00011 Hsp20/alpha crystallin family SMB554_RS15385 PF00459 Inositol monophosphatase family SMB554_RS15395 PF00072 Response regulator receiver domain SMB554_RS15405 PF00920 Dehydratase family SMB554_RS15425 PF00127 Copper binding proteins, plastocyanin/azurin family SMB554_RS15465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS15465 PF03466 LysR substrate binding domain SMB554_RS15470 PF00248 Aldo/keto reductase family SMB554_RS15475 PF14403 Circularly permuted ATP-grasp type 2 SMB554_RS15475 PF04168 A predicted alpha-helical domain with a conserved ER motif. SMB554_RS15480 PF08379 Bacterial transglutaminase-like N-terminal region SMB554_RS15480 PF01841 Transglutaminase-like superfamily SMB554_RS15490 PF00343 Carbohydrate phosphorylase SMB554_RS15495 PF02806 Alpha amylase, C-terminal all-beta domain SMB554_RS15495 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMB554_RS15495 PF00128 Alpha amylase, catalytic domain SMB554_RS15500 PF00483 Nucleotidyl transferase SMB554_RS15505 PF00534 Glycosyl transferases group 1 SMB554_RS15505 PF08323 Starch synthase catalytic domain SMB554_RS15510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SMB554_RS15510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SMB554_RS15510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SMB554_RS15510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SMB554_RS15515 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMB554_RS15515 PF18390 Glycogen debranching enzyme C-terminal domain SMB554_RS15515 PF00128 Alpha amylase, catalytic domain SMB554_RS15520 PF01575 MaoC like domain SMB554_RS15530 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS15530 PF00107 Zinc-binding dehydrogenase SMB554_RS15535 PF04268 Sarcosine oxidase, gamma subunit family SMB554_RS15540 PF17806 Sarcosine oxidase A3 domain SMB554_RS15540 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS15540 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS15540 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS15550 PF01266 FAD dependent oxidoreductase SMB554_RS15560 PF01165 Ribosomal protein S21 SMB554_RS15575 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS15575 PF00072 Response regulator receiver domain SMB554_RS15580 PF02233 NAD(P) transhydrogenase beta subunit SMB554_RS15585 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SMB554_RS15590 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SMB554_RS15590 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SMB554_RS15600 PF08447 PAS fold SMB554_RS15600 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS15600 PF00563 EAL domain SMB554_RS15600 PF08448 PAS fold SMB554_RS15605 PF07722 Peptidase C26 SMB554_RS15610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS15610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS15615 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS15620 PF01047 MarR family SMB554_RS15625 PF02633 Creatinine amidohydrolase SMB554_RS15630 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMB554_RS15630 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMB554_RS15645 PF01810 LysE type translocator SMB554_RS15655 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMB554_RS15655 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SMB554_RS15660 PF03466 LysR substrate binding domain SMB554_RS15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS15670 PF03824 High-affinity nickel-transport protein SMB554_RS15675 PF01850 PIN domain SMB554_RS15705 PF01081 KDPG and KHG aldolase SMB554_RS15710 PF01928 CYTH domain SMB554_RS15720 PF00581 Rhodanese-like domain SMB554_RS15720 PF17773 UPF0176 acylphosphatase like domain SMB554_RS15725 PF03180 NLPA lipoprotein SMB554_RS15730 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS15735 PF00005 ABC transporter SMB554_RS15735 PF09383 NIL domain SMB554_RS15740 PF00232 Glycosyl hydrolase family 1 SMB554_RS15745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS15745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS15755 PF01261 Xylose isomerase-like TIM barrel SMB554_RS15760 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS15760 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS15765 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS15775 PF07690 Major Facilitator Superfamily SMB554_RS15780 PF13533 Biotin-lipoyl like SMB554_RS15785 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS15790 PF06445 GyrI-like small molecule binding domain SMB554_RS15790 PF12833 Helix-turn-helix domain SMB554_RS15795 PF03741 Integral membrane protein TerC family SMB554_RS15795 PF03471 Transporter associated domain SMB554_RS15800 PF00749 tRNA synthetases class I (E and Q), catalytic domain SMB554_RS15805 PF00152 tRNA synthetases class II (D, K and N) SMB554_RS15805 PF01336 OB-fold nucleic acid binding domain SMB554_RS15815 PF01156 Inosine-uridine preferring nucleoside hydrolase SMB554_RS15825 PF01068 ATP dependent DNA ligase domain SMB554_RS15825 PF04675 DNA ligase N terminus SMB554_RS15825 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS15830 PF00563 EAL domain SMB554_RS15830 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS15830 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS15835 PF13244 Domain of unknown function (DUF4040) SMB554_RS15835 PF00361 Proton-conducting membrane transporter SMB554_RS15835 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SMB554_RS15835 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter SMB554_RS15840 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMB554_RS15845 PF00361 Proton-conducting membrane transporter SMB554_RS15850 PF01899 Na+/H+ ion antiporter subunit SMB554_RS15855 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) SMB554_RS15860 PF03334 Na+/H+ antiporter subunit SMB554_RS15865 PF02525 Flavodoxin-like fold SMB554_RS15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS15870 PF03466 LysR substrate binding domain SMB554_RS15875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS15880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS15885 PF02571 Precorrin-6x reductase CbiJ/CobK SMB554_RS15890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS15895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS15900 PF02570 Precorrin-8X methylmutase SMB554_RS15905 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SMB554_RS15910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS15915 PF03167 Uracil DNA glycosylase superfamily SMB554_RS15930 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS15935 PF03459 TOBE domain SMB554_RS15935 PF00005 ABC transporter SMB554_RS15940 PF03459 TOBE domain SMB554_RS15940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS15945 PF01266 FAD dependent oxidoreductase SMB554_RS15950 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal SMB554_RS15950 PF00676 Dehydrogenase E1 component SMB554_RS15955 PF02780 Transketolase, C-terminal domain SMB554_RS15955 PF02779 Transketolase, pyrimidine binding domain SMB554_RS15960 PF02817 e3 binding domain SMB554_RS15960 PF00364 Biotin-requiring enzyme SMB554_RS15960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMB554_RS15965 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS15965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS15970 PF00551 Formyl transferase SMB554_RS15975 PF14497 Glutathione S-transferase, C-terminal domain SMB554_RS15975 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS15985 PF04209 homogentisate 1,2-dioxygenase SMB554_RS15995 PF01037 Lrp/AsnC ligand binding domain SMB554_RS16000 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMB554_RS16005 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS16005 PF00072 Response regulator receiver domain SMB554_RS16020 PF00664 ABC transporter transmembrane region SMB554_RS16020 PF00005 ABC transporter SMB554_RS16025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS16025 PF00529 HlyD membrane-fusion protein of T1SS SMB554_RS16050 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS16050 PF13188 PAS domain SMB554_RS16050 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS16050 PF00563 EAL domain SMB554_RS16060 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS16060 PF07729 FCD domain SMB554_RS16070 PF00294 pfkB family carbohydrate kinase SMB554_RS16085 PF00005 ABC transporter SMB554_RS16095 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16100 PF01266 FAD dependent oxidoreductase SMB554_RS16105 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS16115 PF03009 Glycerophosphoryl diester phosphodiesterase family SMB554_RS16120 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16120 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS16125 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS16130 PF00005 ABC transporter SMB554_RS16135 PF00005 ABC transporter SMB554_RS16135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS16140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS16145 PF04198 Putative sugar-binding domain SMB554_RS16145 PF00325 Bacterial regulatory proteins, crp family SMB554_RS16180 PF06480 FtsH Extracellular SMB554_RS16180 PF17862 AAA+ lid domain SMB554_RS16180 PF01434 Peptidase family M41 SMB554_RS16180 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS16195 PF01420 Type I restriction modification DNA specificity domain SMB554_RS16200 PF01420 Type I restriction modification DNA specificity domain SMB554_RS16205 PF02384 N-6 DNA Methylase SMB554_RS16210 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SMB554_RS16210 PF00271 Helicase conserved C-terminal domain SMB554_RS16210 PF04851 Type III restriction enzyme, res subunit SMB554_RS16210 PF08463 EcoEI R protein C-terminal SMB554_RS16235 PF04480 Protein of unknown function (DUF559) SMB554_RS16295 PF01695 IstB-like ATP binding protein SMB554_RS16305 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS16305 PF17862 AAA+ lid domain SMB554_RS16305 PF01434 Peptidase family M41 SMB554_RS16360 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMB554_RS16360 PF00005 ABC transporter SMB554_RS16365 PF00005 ABC transporter SMB554_RS16370 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS16375 PF11862 Domain of unknown function (DUF3382) SMB554_RS16375 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS16380 PF00732 GMC oxidoreductase SMB554_RS16380 PF05199 GMC oxidoreductase SMB554_RS16385 PF00872 Transposase, Mutator family SMB554_RS16390 PF02965 Vitamin B12 dependent methionine synthase, activation domain SMB554_RS16390 PF02607 B12 binding domain SMB554_RS16390 PF02310 B12 binding domain SMB554_RS16390 PF00809 Pterin binding enzyme SMB554_RS16390 PF02574 Homocysteine S-methyltransferase SMB554_RS16400 PF03928 Haem-degrading SMB554_RS16405 PF00480 ROK family SMB554_RS16430 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SMB554_RS16435 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SMB554_RS16435 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SMB554_RS16435 PF13288 DXP reductoisomerase C-terminal domain SMB554_RS16440 PF00155 Aminotransferase class I and II SMB554_RS16445 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS16445 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS16450 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS16450 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS16455 PF01799 [2Fe-2S] binding domain SMB554_RS16455 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS16465 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS16470 PF08386 TAP-like protein SMB554_RS16470 PF00561 alpha/beta hydrolase fold SMB554_RS16475 PF17243 POTRA domain TamA domain 1 SMB554_RS16475 PF01103 Surface antigen SMB554_RS16475 PF07244 Surface antigen variable number repeat SMB554_RS16490 PF01636 Phosphotransferase enzyme family SMB554_RS16505 PF00491 Arginase family SMB554_RS16510 PF01584 CheW-like domain SMB554_RS16515 PF08447 PAS fold SMB554_RS16515 PF13426 PAS domain SMB554_RS16515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS16525 PF02634 FdhD/NarQ family SMB554_RS16530 PF01568 Molydopterin dinucleotide binding domain SMB554_RS16530 PF00384 Molybdopterin oxidoreductase SMB554_RS16530 PF12838 4Fe-4S dicluster domain SMB554_RS16530 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMB554_RS16530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS16540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMB554_RS16540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMB554_RS16540 PF00037 4Fe-4S binding domain SMB554_RS16550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS16550 PF03466 LysR substrate binding domain SMB554_RS16560 PF08220 DeoR-like helix-turn-helix domain SMB554_RS16560 PF00455 DeoR C terminal sensor domain SMB554_RS16565 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMB554_RS16565 PF01266 FAD dependent oxidoreductase SMB554_RS16570 PF03459 TOBE domain SMB554_RS16570 PF17912 MalK OB fold domain SMB554_RS16570 PF00005 ABC transporter SMB554_RS16575 PF00005 ABC transporter SMB554_RS16580 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16585 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16600 PF00860 Permease family SMB554_RS16605 PF00860 Permease family SMB554_RS16615 PF01475 Ferric uptake regulator family SMB554_RS16620 PF01297 Zinc-uptake complex component A periplasmic SMB554_RS16625 PF00005 ABC transporter SMB554_RS16630 PF00950 ABC 3 transport family SMB554_RS16635 PF00950 ABC 3 transport family SMB554_RS16645 PF01037 Lrp/AsnC ligand binding domain SMB554_RS16645 PF13404 AsnC-type helix-turn-helix domain SMB554_RS16650 PF03435 Saccharopine dehydrogenase NADP binding domain SMB554_RS16650 PF16653 Saccharopine dehydrogenase C-terminal domain SMB554_RS16655 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SMB554_RS16660 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMB554_RS16660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMB554_RS16665 PF00231 ATP synthase SMB554_RS16670 PF00306 ATP synthase alpha/beta chain, C terminal domain SMB554_RS16670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMB554_RS16670 PF02874 ATP synthase alpha/beta family, beta-barrel domain SMB554_RS16675 PF00213 ATP synthase delta (OSCP) subunit SMB554_RS16685 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SMB554_RS16685 PF18074 Primosomal protein N C-terminal domain SMB554_RS16685 PF17764 3′ DNA-binding domain (3′BD) SMB554_RS16685 PF00270 DEAD/DEAH box helicase SMB554_RS16690 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMB554_RS16710 PF02463 RecF/RecN/SMC N terminal domain SMB554_RS16720 PF00589 Phage integrase family SMB554_RS16720 PF02899 Phage integrase, N-terminal SAM-like domain SMB554_RS16730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS16730 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS16745 PF01810 LysE type translocator SMB554_RS16750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMB554_RS16750 PF02817 e3 binding domain SMB554_RS16750 PF00364 Biotin-requiring enzyme SMB554_RS16755 PF16078 2-oxoglutarate dehydrogenase N-terminus SMB554_RS16755 PF00676 Dehydrogenase E1 component SMB554_RS16755 PF16870 2-oxoglutarate dehydrogenase C-terminal SMB554_RS16755 PF02779 Transketolase, pyrimidine binding domain SMB554_RS16760 PF00549 CoA-ligase SMB554_RS16760 PF02629 CoA binding domain SMB554_RS16765 PF08442 ATP-grasp domain SMB554_RS16765 PF00549 CoA-ligase SMB554_RS16770 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SMB554_RS16770 PF00056 lactate/malate dehydrogenase, NAD binding domain SMB554_RS16775 PF03969 AFG1-like ATPase SMB554_RS16780 PF01381 Helix-turn-helix SMB554_RS16785 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB SMB554_RS16790 PF02974 Protease inhibitor Inh SMB554_RS16795 PF08402 TOBE domain SMB554_RS16795 PF00005 ABC transporter SMB554_RS16800 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16805 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS16810 PF01547 Bacterial extracellular solute-binding protein SMB554_RS16815 PF00480 ROK family SMB554_RS16830 PF01625 Peptide methionine sulfoxide reductase SMB554_RS16835 PF13237 4Fe-4S dicluster domain SMB554_RS16835 PF13085 2Fe-2S iron-sulfur cluster binding domain SMB554_RS16840 PF00890 FAD binding domain SMB554_RS16840 PF02910 Fumarate reductase flavoprotein C-term SMB554_RS16850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SMB554_RS16875 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SMB554_RS16875 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SMB554_RS16880 PF00814 Glycoprotease family SMB554_RS16885 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SMB554_RS16885 PF03900 Porphobilinogen deaminase, C-terminal domain SMB554_RS16910 PF00958 GMP synthase C terminal domain SMB554_RS16910 PF00117 Glutamine amidotransferase class-I SMB554_RS16920 PF02325 YGGT family SMB554_RS16925 PF00719 Inorganic pyrophosphatase SMB554_RS16940 PF00679 Elongation factor G C-terminus SMB554_RS16940 PF03144 Elongation factor Tu domain 2 SMB554_RS16940 PF00009 Elongation factor Tu GTP binding domain SMB554_RS16950 PF13619 KTSC domain SMB554_RS16955 PF01425 Amidase SMB554_RS16980 PF00829 Ribosomal prokaryotic L21 protein SMB554_RS16985 PF01016 Ribosomal L27 protein SMB554_RS16995 PF13302 Acetyltransferase (GNAT) domain SMB554_RS17000 PF01018 GTP1/OBG SMB554_RS17000 PF01926 50S ribosome-binding GTPase SMB554_RS17005 PF00696 Amino acid kinase family SMB554_RS17005 PF01472 PUA domain SMB554_RS17010 PF00171 Aldehyde dehydrogenase family SMB554_RS17015 PF01467 Cytidylyltransferase-like SMB554_RS17025 PF02590 Predicted SPOUT methyltransferase SMB554_RS17030 PF01551 Peptidase family M23 SMB554_RS17035 PF03572 Peptidase family S41 SMB554_RS17035 PF13180 PDZ domain SMB554_RS17040 PF04748 Divergent polysaccharide deacetylase SMB554_RS17045 PF00293 NUDIX domain SMB554_RS17050 PF00210 Ferritin-like domain SMB554_RS17060 PF14579 Helix-hairpin-helix motif SMB554_RS17060 PF01336 OB-fold nucleic acid binding domain SMB554_RS17060 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SMB554_RS17060 PF02811 PHP domain SMB554_RS17060 PF07733 Bacterial DNA polymerase III alpha NTPase domain SMB554_RS17080 PF03328 HpcH/HpaI aldolase/citrate lyase family SMB554_RS17090 PF00694 Aconitase C-terminal domain SMB554_RS17095 PF01042 Endoribonuclease L-PSP SMB554_RS17100 PF04204 Homoserine O-succinyltransferase SMB554_RS17105 PF01263 Aldose 1-epimerase SMB554_RS17110 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMB554_RS17110 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMB554_RS17125 PF00085 Thioredoxin SMB554_RS17130 PF05362 Lon protease (S16) C-terminal proteolytic domain SMB554_RS17130 PF02190 ATP-dependent protease La (LON) substrate-binding domain SMB554_RS17130 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS17135 PF03966 Trm112p-like protein SMB554_RS17145 PF01494 FAD binding domain SMB554_RS17155 PF00543 Nitrogen regulatory protein P-II SMB554_RS17160 PF00909 Ammonium Transporter Family SMB554_RS17165 PF17854 FtsK alpha domain SMB554_RS17165 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SMB554_RS17165 PF01580 FtsK/SpoIIIE family SMB554_RS17165 PF09397 Ftsk gamma domain SMB554_RS17170 PF03548 Outer membrane lipoprotein carrier protein LolA SMB554_RS17185 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS17185 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS17190 PF13407 Periplasmic binding protein domain SMB554_RS17195 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS17200 PF00005 ABC transporter SMB554_RS17205 PF00480 ROK family SMB554_RS17210 PF00480 ROK family SMB554_RS17225 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS17225 PF00072 Response regulator receiver domain SMB554_RS17235 PF00300 Histidine phosphatase superfamily (branch 1) SMB554_RS17240 PF00330 Aconitase family (aconitate hydratase) SMB554_RS17250 PF01047 MarR family SMB554_RS17255 PF07690 Major Facilitator Superfamily SMB554_RS17260 PF00764 Arginosuccinate synthase SMB554_RS17270 PF00005 ABC transporter SMB554_RS17275 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS17285 PF04055 Radical SAM superfamily SMB554_RS17305 PF01329 Pterin 4 alpha carbinolamine dehydratase SMB554_RS17310 PF02834 LigT like Phosphoesterase SMB554_RS17315 PF13472 GDSL-like Lipase/Acylhydrolase family SMB554_RS17320 PF00005 ABC transporter SMB554_RS17330 PF01027 Inhibitor of apoptosis-promoting Bax1 SMB554_RS17340 PF00574 Clp protease SMB554_RS17350 PF01022 Bacterial regulatory protein, arsR family SMB554_RS17365 PF00694 Aconitase C-terminal domain SMB554_RS17365 PF00330 Aconitase family (aconitate hydratase) SMB554_RS17370 PF00005 ABC transporter SMB554_RS17375 PF03379 CcmB protein SMB554_RS17380 PF01578 Cytochrome C assembly protein SMB554_RS17390 PF08534 Redoxin SMB554_RS17395 PF10755 Protein of unknown function (DUF2585) SMB554_RS17400 PF04279 Intracellular septation protein A SMB554_RS17405 PF00448 SRP54-type protein, GTPase domain SMB554_RS17405 PF02881 SRP54-type protein, helical bundle domain SMB554_RS17410 PF00919 Uncharacterized protein family UPF0004 SMB554_RS17410 PF04055 Radical SAM superfamily SMB554_RS17415 PF01678 Diaminopimelate epimerase SMB554_RS17420 PF00448 SRP54-type protein, GTPase domain SMB554_RS17420 PF02881 SRP54-type protein, helical bundle domain SMB554_RS17420 PF02978 Signal peptide binding domain SMB554_RS17425 PF02153 Prephenate dehydrogenase SMB554_RS17425 PF01817 Chorismate mutase type II SMB554_RS17430 PF00886 Ribosomal protein S16 SMB554_RS17435 PF01782 RimM N-terminal domain SMB554_RS17435 PF05239 PRC-barrel domain SMB554_RS17440 PF01746 tRNA (Guanine-1)-methyltransferase SMB554_RS17445 PF01925 Sulfite exporter TauE/SafE SMB554_RS17450 PF01245 Ribosomal protein L19 SMB554_RS17455 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS17460 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS17465 PF16326 ABC transporter C-terminal domain SMB554_RS17465 PF00005 ABC transporter SMB554_RS17480 PF01547 Bacterial extracellular solute-binding protein SMB554_RS17485 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS17490 PF00005 ABC transporter SMB554_RS17495 PF01435 Peptidase family M48 SMB554_RS17500 PF01609 Transposase DDE domain SMB554_RS17505 PF04542 Sigma-70 region 2 SMB554_RS17505 PF00140 Sigma-70 factor, region 1.2 SMB554_RS17505 PF04545 Sigma-70, region 4 SMB554_RS17510 PF02559 CarD-like/TRCF domain SMB554_RS17515 PF00037 4Fe-4S binding domain SMB554_RS17515 PF11953 Domain of unknown function (DUF3470) SMB554_RS17535 PF00108 Thiolase, N-terminal domain SMB554_RS17535 PF02803 Thiolase, C-terminal domain SMB554_RS17540 PF05233 PHB accumulation regulatory domain SMB554_RS17540 PF07879 PHB/PHA accumulation regulator DNA-binding domain SMB554_RS17545 PF01783 Ribosomal L32p protein family SMB554_RS17550 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS17550 PF13417 Glutathione S-transferase, N-terminal domain SMB554_RS17555 PF00912 Transglycosylase SMB554_RS17560 PF00348 Polyprenyl synthetase SMB554_RS17565 PF00155 Aminotransferase class I and II SMB554_RS17575 PF04551 GcpE protein SMB554_RS17580 PF07690 Major Facilitator Superfamily SMB554_RS17590 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS17595 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS17600 PF00005 ABC transporter SMB554_RS17605 PF00289 Biotin carboxylase, N-terminal domain SMB554_RS17605 PF00364 Biotin-requiring enzyme SMB554_RS17605 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS17605 PF00682 HMGL-like SMB554_RS17605 PF02436 Conserved carboxylase domain SMB554_RS17605 PF02785 Biotin carboxylase C-terminal domain SMB554_RS17615 PF00005 ABC transporter SMB554_RS17615 PF00664 ABC transporter transmembrane region SMB554_RS17630 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain SMB554_RS17630 PF06165 Glycosyltransferase family 36 SMB554_RS17630 PF10091 Putative glucoamylase SMB554_RS17640 PF03466 LysR substrate binding domain SMB554_RS17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS17645 PF07063 Domain of unknown function (DUF1338) SMB554_RS17655 PF00171 Aldehyde dehydrogenase family SMB554_RS17660 PF00155 Aminotransferase class I and II SMB554_RS17670 PF00202 Aminotransferase class-III SMB554_RS17675 PF05161 MOFRL family SMB554_RS17675 PF13660 Domain of unknown function (DUF4147) SMB554_RS17680 PF05199 GMC oxidoreductase SMB554_RS17680 PF00732 GMC oxidoreductase SMB554_RS17690 PF00732 GMC oxidoreductase SMB554_RS17690 PF05199 GMC oxidoreductase SMB554_RS17695 PF17912 MalK OB fold domain SMB554_RS17695 PF00005 ABC transporter SMB554_RS17700 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS17705 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS17710 PF01547 Bacterial extracellular solute-binding protein SMB554_RS17715 PF00171 Aldehyde dehydrogenase family SMB554_RS17720 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS17725 PF01144 Coenzyme A transferase SMB554_RS17730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS17730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS17735 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS17745 PF01432 Peptidase family M3 SMB554_RS17755 PF00180 Isocitrate/isopropylmalate dehydrogenase SMB554_RS17760 PF01569 PAP2 superfamily SMB554_RS17765 PF00083 Sugar (and other) transporter SMB554_RS17770 PF01850 PIN domain SMB554_RS17775 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SMB554_RS17785 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMB554_RS17785 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMB554_RS17800 PF00484 Carbonic anhydrase SMB554_RS17805 PF08543 Phosphomethylpyrimidine kinase SMB554_RS17810 PF05088 Bacterial NAD-glutamate dehydrogenase SMB554_RS17825 PF02142 MGS-like domain SMB554_RS17825 PF01808 AICARFT/IMPCHase bienzyme SMB554_RS17835 PF01189 16S rRNA methyltransferase RsmB/F SMB554_RS17835 PF01029 NusB family SMB554_RS17840 PF01435 Peptidase family M48 SMB554_RS17850 PF00501 AMP-binding enzyme SMB554_RS17850 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS17850 PF16177 Acetyl-coenzyme A synthetase N-terminus SMB554_RS17865 PF16177 Acetyl-coenzyme A synthetase N-terminus SMB554_RS17865 PF00501 AMP-binding enzyme SMB554_RS17865 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS17870 PF01168 Alanine racemase, N-terminal domain SMB554_RS17875 PF09334 tRNA synthetases class I (M) SMB554_RS17875 PF13603 Leucyl-tRNA synthetase, Domain 2 SMB554_RS17875 PF08264 Anticodon-binding domain of tRNA SMB554_RS17875 PF00133 tRNA synthetases class I (I, L, M and V) SMB554_RS17890 PF02195 ParB-like nuclease domain SMB554_RS17890 PF17762 HTH domain found in ParB protein SMB554_RS17895 PF13614 AAA domain SMB554_RS17900 PF02527 rRNA small subunit methyltransferase G SMB554_RS17905 PF13932 GidA associated domain SMB554_RS17905 PF01134 Glucose inhibited division protein A SMB554_RS17910 PF12631 MnmE helical domain SMB554_RS17910 PF01926 50S ribosome-binding GTPase SMB554_RS17910 PF10396 GTP-binding protein TrmE N-terminus SMB554_RS17915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SMB554_RS17915 PF07498 Rho termination factor, N-terminal domain SMB554_RS17915 PF07497 Rho termination factor, RNA-binding domain SMB554_RS17920 PF03653 Uncharacterised protein family (UPF0093) SMB554_RS17925 PF01208 Uroporphyrinogen decarboxylase (URO-D) SMB554_RS17935 PF01568 Molydopterin dinucleotide binding domain SMB554_RS17935 PF00384 Molybdopterin oxidoreductase SMB554_RS17935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS17940 PF01568 Molydopterin dinucleotide binding domain SMB554_RS17940 PF00384 Molybdopterin oxidoreductase SMB554_RS17940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS17945 PF09163 Formate dehydrogenase N, transmembrane SMB554_RS17945 PF13247 4Fe-4S dicluster domain SMB554_RS17950 PF01292 Prokaryotic cytochrome b561 SMB554_RS17955 PF04216 Protein involved in formate dehydrogenase formation SMB554_RS17960 PF12390 Selenocysteine synthase N terminal SMB554_RS17960 PF03841 L-seryl-tRNA selenium transferase SMB554_RS17970 PF09105 Elongation factor SelB, winged helix SMB554_RS17970 PF00009 Elongation factor Tu GTP binding domain SMB554_RS17970 PF03144 Elongation factor Tu domain 2 SMB554_RS17970 PF09107 Elongation factor SelB, winged helix SMB554_RS17970 PF09106 Elongation factor SelB, winged helix SMB554_RS18015 PF01841 Transglutaminase-like superfamily SMB554_RS18035 PF08548 Peptidase M10 serralysin C terminal SMB554_RS18035 PF00413 Matrixin SMB554_RS18035 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SMB554_RS18040 PF00005 ABC transporter SMB554_RS18040 PF12848 ABC transporter SMB554_RS18045 PF03466 LysR substrate binding domain SMB554_RS18045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS18050 PF00107 Zinc-binding dehydrogenase SMB554_RS18050 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS18060 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS18065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS18065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS18085 PF02515 CoA-transferase family III SMB554_RS18095 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS18100 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS18110 PF00005 ABC transporter SMB554_RS18115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS18115 PF13378 Enolase C-terminal domain-like SMB554_RS18135 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS18135 PF07729 FCD domain SMB554_RS18145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS18145 PF13378 Enolase C-terminal domain-like SMB554_RS18150 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS18150 PF07729 FCD domain SMB554_RS18160 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS18165 PF00005 ABC transporter SMB554_RS18180 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS18185 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS18190 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS18195 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS18200 PF00005 ABC transporter SMB554_RS18205 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS18205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS18215 PF01042 Endoribonuclease L-PSP SMB554_RS18220 PF07886 BA14K-like protein SMB554_RS18225 PF01063 Amino-transferase class IV SMB554_RS18230 PF03576 Peptidase family S58 SMB554_RS18235 PF03466 LysR substrate binding domain SMB554_RS18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS18240 PF13382 Adenine deaminase C-terminal domain SMB554_RS18240 PF01979 Amidohydrolase family SMB554_RS18245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS18250 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS18255 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS18255 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS18260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS18260 PF00005 ABC transporter SMB554_RS18265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS18265 PF00005 ABC transporter SMB554_RS18275 PF01850 PIN domain SMB554_RS18285 PF13426 PAS domain SMB554_RS18285 PF07536 HWE histidine kinase SMB554_RS18285 PF08447 PAS fold SMB554_RS18295 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS18300 PF00226 DnaJ domain SMB554_RS18300 PF01556 DnaJ C terminal domain SMB554_RS18310 PF00034 Cytochrome c SMB554_RS18310 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS18325 PF00118 TCP-1/cpn60 chaperonin family SMB554_RS18330 PF00166 Chaperonin 10 Kd subunit SMB554_RS18335 PF00313 'Cold-shock' DNA-binding domain SMB554_RS18345 PF00487 Fatty acid desaturase SMB554_RS18365 PF01594 AI-2E family transporter SMB554_RS18370 PF13188 PAS domain SMB554_RS18370 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS18370 PF00563 EAL domain SMB554_RS18370 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS18380 PF05922 Peptidase inhibitor I9 SMB554_RS18380 PF00082 Subtilase family SMB554_RS18385 PF08281 Sigma-70, region 4 SMB554_RS18385 PF04542 Sigma-70 region 2 SMB554_RS18405 PF01272 Transcription elongation factor, GreA/GreB, C-term SMB554_RS18405 PF03449 Transcription elongation factor, N-terminal SMB554_RS18410 PF00501 AMP-binding enzyme SMB554_RS18410 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS18420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS18430 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS18435 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS18435 PF07729 FCD domain SMB554_RS18440 PF00263 Bacterial type II and III secretion system protein SMB554_RS18440 PF04972 BON domain SMB554_RS18440 PF13629 Pilus formation protein N terminal region SMB554_RS18455 PF13649 Methyltransferase domain SMB554_RS18460 PF08241 Methyltransferase domain SMB554_RS18470 PF03976 Polyphosphate kinase 2 (PPK2) SMB554_RS18485 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS18490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS18490 PF00034 Cytochrome c SMB554_RS18495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS18495 PF03466 LysR substrate binding domain SMB554_RS18500 PF02567 Phenazine biosynthesis-like protein SMB554_RS18505 PF00313 'Cold-shock' DNA-binding domain SMB554_RS18510 PF07690 Major Facilitator Superfamily SMB554_RS18560 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS18565 PF00005 ABC transporter SMB554_RS18570 PF13407 Periplasmic binding protein domain SMB554_RS18575 PF07730 Histidine kinase SMB554_RS18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS18575 PF05384 Sensor protein DegS SMB554_RS18600 PF04962 KduI/IolB family SMB554_RS18605 PF00005 ABC transporter SMB554_RS18610 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS18620 PF00171 Aldehyde dehydrogenase family SMB554_RS18625 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS18625 PF07729 FCD domain SMB554_RS18635 PF07690 Major Facilitator Superfamily SMB554_RS18640 PF07995 Glucose / Sorbosone dehydrogenase SMB554_RS18645 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SMB554_RS18645 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SMB554_RS18655 PF14760 Rnk N-terminus SMB554_RS18655 PF01272 Transcription elongation factor, GreA/GreB, C-term SMB554_RS18665 PF00982 Glycosyltransferase family 20 SMB554_RS18670 PF00920 Dehydratase family SMB554_RS18675 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS18675 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS18680 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS18685 PF02913 FAD linked oxidases, C-terminal domain SMB554_RS18685 PF01565 FAD binding domain SMB554_RS18690 PF07729 FCD domain SMB554_RS18690 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS18700 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS18705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS18710 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS18725 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS18725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS18730 PF07859 alpha/beta hydrolase fold SMB554_RS18735 PF00171 Aldehyde dehydrogenase family SMB554_RS18740 PF00465 Iron-containing alcohol dehydrogenase SMB554_RS18745 PF02615 Malate/L-lactate dehydrogenase SMB554_RS18750 PF07729 FCD domain SMB554_RS18750 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS18755 PF00005 ABC transporter SMB554_RS18760 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS18765 PF13407 Periplasmic binding protein domain SMB554_RS18770 PF01965 DJ-1/PfpI family SMB554_RS18790 PF08241 Methyltransferase domain SMB554_RS18800 PF00376 MerR family regulatory protein SMB554_RS18800 PF09278 MerR, DNA binding SMB554_RS18845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS18845 PF03466 LysR substrate binding domain SMB554_RS18855 PF04221 RelB antitoxin SMB554_RS18900 PF14759 Reductase C-terminal SMB554_RS18900 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS18905 PF13407 Periplasmic binding protein domain SMB554_RS18930 PF13458 Periplasmic binding protein SMB554_RS18935 PF03401 Tripartite tricarboxylate transporter family receptor SMB554_RS18950 PF00296 Luciferase-like monooxygenase SMB554_RS18955 PF13460 NAD(P)H-binding SMB554_RS18960 PF01494 FAD binding domain SMB554_RS18965 PF05368 NmrA-like family SMB554_RS18975 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS18975 PF08028 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS18975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS18985 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS18990 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS18990 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS18995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS18995 PF00005 ABC transporter SMB554_RS19000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS19000 PF00005 ABC transporter SMB554_RS19005 PF00248 Aldo/keto reductase family SMB554_RS19015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS19040 PF00005 ABC transporter SMB554_RS19040 PF12857 TOBE-like domain SMB554_RS19050 PF07536 HWE histidine kinase SMB554_RS19050 PF13426 PAS domain SMB554_RS19050 PF13581 Histidine kinase-like ATPase domain SMB554_RS19055 PF06745 KaiC SMB554_RS19060 PF02705 K+ potassium transporter SMB554_RS19075 PF01527 Transposase SMB554_RS19105 PF03167 Uracil DNA glycosylase superfamily SMB554_RS19110 PF00732 GMC oxidoreductase SMB554_RS19110 PF05199 GMC oxidoreductase SMB554_RS19120 PF02608 ABC transporter substrate-binding protein PnrA-like SMB554_RS19125 PF00005 ABC transporter SMB554_RS19130 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS19135 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS19145 PF01156 Inosine-uridine preferring nucleoside hydrolase SMB554_RS19150 PF01979 Amidohydrolase family SMB554_RS19155 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMB554_RS19200 PF00107 Zinc-binding dehydrogenase SMB554_RS19200 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS19205 PF00550 Phosphopantetheine attachment site SMB554_RS19205 PF16197 Ketoacyl-synthetase C-terminal extension SMB554_RS19205 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS19205 PF08659 KR domain SMB554_RS19205 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS19205 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS19205 PF14765 Polyketide synthase dehydratase SMB554_RS19205 PF00698 Acyl transferase domain SMB554_RS19210 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS19210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS19210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS19215 PF13458 Periplasmic binding protein SMB554_RS19220 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS19225 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMB554_RS19225 PF00005 ABC transporter SMB554_RS19230 PF00005 ABC transporter SMB554_RS19240 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SMB554_RS19240 PF01488 Shikimate / quinate 5-dehydrogenase SMB554_RS19240 PF08501 Shikimate dehydrogenase substrate binding domain SMB554_RS19245 PF01565 FAD binding domain SMB554_RS19245 PF02913 FAD linked oxidases, C-terminal domain SMB554_RS19250 PF00732 GMC oxidoreductase SMB554_RS19250 PF05199 GMC oxidoreductase SMB554_RS19260 PF12728 Helix-turn-helix domain SMB554_RS19275 PF01970 Tripartite tricarboxylate transporter TctA family SMB554_RS19285 PF00694 Aconitase C-terminal domain SMB554_RS19285 PF00330 Aconitase family (aconitate hydratase) SMB554_RS19295 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS19295 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS19300 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS19300 PF01799 [2Fe-2S] binding domain SMB554_RS19305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS19305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS19320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS19335 PF07687 Peptidase dimerisation domain SMB554_RS19335 PF01546 Peptidase family M20/M25/M40 SMB554_RS19340 PF01042 Endoribonuclease L-PSP SMB554_RS19355 PF01614 Bacterial transcriptional regulator SMB554_RS19355 PF09339 IclR helix-turn-helix domain SMB554_RS19365 PF03466 LysR substrate binding domain SMB554_RS19365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS19370 PF00355 Rieske [2Fe-2S] domain SMB554_RS19370 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SMB554_RS19375 PF00970 Oxidoreductase FAD-binding domain SMB554_RS19375 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS19375 PF00175 Oxidoreductase NAD-binding domain SMB554_RS19385 PF00561 alpha/beta hydrolase fold SMB554_RS19400 PF00561 alpha/beta hydrolase fold SMB554_RS19400 PF08386 TAP-like protein SMB554_RS19405 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS19410 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS19420 PF00313 'Cold-shock' DNA-binding domain SMB554_RS19430 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS19445 PF00561 alpha/beta hydrolase fold SMB554_RS19450 PF01638 HxlR-like helix-turn-helix SMB554_RS19460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS19460 PF03466 LysR substrate binding domain SMB554_RS19485 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS19495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS19495 PF03466 LysR substrate binding domain SMB554_RS19500 PF00296 Luciferase-like monooxygenase SMB554_RS19510 PF02661 Fic/DOC family SMB554_RS19510 PF13784 Fic/DOC family N-terminal SMB554_RS19525 PF01810 LysE type translocator SMB554_RS19560 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS19560 PF13191 AAA ATPase domain SMB554_RS19570 PF00561 alpha/beta hydrolase fold SMB554_RS19575 PF00884 Sulfatase SMB554_RS19600 PF01882 Protein of unknown function DUF58 SMB554_RS19605 PF17863 AAA lid domain SMB554_RS19605 PF07726 ATPase family associated with various cellular activities (AAA) SMB554_RS19610 PF06826 Predicted Permease Membrane Region SMB554_RS19610 PF02080 TrkA-C domain SMB554_RS19615 PF00155 Aminotransferase class I and II SMB554_RS19620 PF06826 Predicted Permease Membrane Region SMB554_RS19620 PF02080 TrkA-C domain SMB554_RS19630 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS19630 PF08447 PAS fold SMB554_RS19630 PF13493 Domain of unknown function (DUF4118) SMB554_RS19630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS19630 PF00989 PAS fold SMB554_RS19630 PF13426 PAS domain SMB554_RS19635 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS19635 PF00072 Response regulator receiver domain SMB554_RS19640 PF00072 Response regulator receiver domain SMB554_RS19640 PF01627 Hpt domain SMB554_RS19640 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS19640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS19670 PF03781 Sulfatase-modifying factor enzyme 1 SMB554_RS19680 PF00174 Oxidoreductase molybdopterin binding domain SMB554_RS19690 PF13458 Periplasmic binding protein SMB554_RS19695 PF00072 Response regulator receiver domain SMB554_RS19695 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS19700 PF00005 ABC transporter SMB554_RS19705 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS19715 PF07478 D-ala D-ala ligase C-terminus SMB554_RS19715 PF01820 D-ala D-ala ligase N-terminus SMB554_RS19765 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS19765 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS19790 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS19795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS19800 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS19805 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS19805 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS19810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS19810 PF00005 ABC transporter SMB554_RS19850 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS19865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS19865 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SMB554_RS19885 PF03597 Cytochrome oxidase maturation protein cbb3-type SMB554_RS19900 PF00691 OmpA family SMB554_RS19900 PF05736 OprF membrane domain SMB554_RS19910 PF00230 Major intrinsic protein SMB554_RS19920 PF00924 Mechanosensitive ion channel SMB554_RS19935 PF11339 Protein of unknown function (DUF3141) SMB554_RS19965 PF07886 BA14K-like protein SMB554_RS19985 PF07756 Protein of unknown function (DUF1612) SMB554_RS19985 PF11972 HTH DNA binding domain SMB554_RS19990 PF11972 HTH DNA binding domain SMB554_RS19990 PF07756 Protein of unknown function (DUF1612) SMB554_RS19995 PF11972 HTH DNA binding domain SMB554_RS19995 PF07756 Protein of unknown function (DUF1612) SMB554_RS20010 PF00665 Integrase core domain SMB554_RS20010 PF13936 Helix-turn-helix domain SMB554_RS20015 PF03264 NapC/NirT cytochrome c family, N-terminal region SMB554_RS20025 PF13545 Crp-like helix-turn-helix domain SMB554_RS20025 PF00027 Cyclic nucleotide-binding domain SMB554_RS20040 PF01594 AI-2E family transporter SMB554_RS20060 PF03976 Polyphosphate kinase 2 (PPK2) SMB554_RS20070 PF01699 Sodium/calcium exchanger protein SMB554_RS20080 PF13520 Amino acid permease SMB554_RS20085 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SMB554_RS20085 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SMB554_RS20085 PF01276 Orn/Lys/Arg decarboxylase, major domain SMB554_RS20090 PF01276 Orn/Lys/Arg decarboxylase, major domain SMB554_RS20090 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SMB554_RS20090 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SMB554_RS20100 PF13520 Amino acid permease SMB554_RS20130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SMB554_RS20130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SMB554_RS20135 PF00696 Amino acid kinase family SMB554_RS20155 PF05035 2-keto-3-deoxy-galactonokinase SMB554_RS20160 PF00701 Dihydrodipicolinate synthetase family SMB554_RS20165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS20165 PF13378 Enolase C-terminal domain-like SMB554_RS20170 PF01547 Bacterial extracellular solute-binding protein SMB554_RS20175 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20180 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20185 PF00005 ABC transporter SMB554_RS20185 PF17912 MalK OB fold domain SMB554_RS20190 PF17912 MalK OB fold domain SMB554_RS20190 PF00005 ABC transporter SMB554_RS20195 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS20200 PF08450 SMP-30/Gluconolactonase/LRE-like region SMB554_RS20205 PF00106 short chain dehydrogenase SMB554_RS20255 PF00313 'Cold-shock' DNA-binding domain SMB554_RS20275 PF00118 TCP-1/cpn60 chaperonin family SMB554_RS20280 PF00166 Chaperonin 10 Kd subunit SMB554_RS20290 PF05443 ROS/MUCR transcriptional regulator protein SMB554_RS20300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS20300 PF03466 LysR substrate binding domain SMB554_RS20305 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SMB554_RS20305 PF00355 Rieske [2Fe-2S] domain SMB554_RS20310 PF00970 Oxidoreductase FAD-binding domain SMB554_RS20310 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS20310 PF00175 Oxidoreductase NAD-binding domain SMB554_RS20315 PF01613 Flavin reductase like domain SMB554_RS20345 PF00872 Transposase, Mutator family SMB554_RS20355 PF00872 Transposase, Mutator family SMB554_RS20365 PF08543 Phosphomethylpyrimidine kinase SMB554_RS20375 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMB554_RS20375 PF06988 NifT/FixU protein SMB554_RS20385 PF00701 Dihydrodipicolinate synthetase family SMB554_RS20390 PF00171 Aldehyde dehydrogenase family SMB554_RS20395 PF18603 L-amino acid ligase C-terminal domain 2 SMB554_RS20395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS20415 PF04963 Sigma-54 factor, core binding domain SMB554_RS20415 PF04552 Sigma-54, DNA binding domain SMB554_RS20415 PF00309 Sigma-54 factor, Activator interacting domain (AID) SMB554_RS20430 PF02774 Semialdehyde dehydrogenase, dimerisation domain SMB554_RS20430 PF01118 Semialdehyde dehydrogenase, NAD binding domain SMB554_RS20435 PF01842 ACT domain SMB554_RS20435 PF00696 Amino acid kinase family SMB554_RS20435 PF13840 ACT domain SMB554_RS20445 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SMB554_RS20445 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SMB554_RS20455 PF01513 ATP-NAD kinase SMB554_RS20460 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS20475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS20475 PF18603 L-amino acid ligase C-terminal domain 2 SMB554_RS20490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS20490 PF18603 L-amino acid ligase C-terminal domain 2 SMB554_RS20495 PF12544 Lysine-2,3-aminomutase SMB554_RS20495 PF04055 Radical SAM superfamily SMB554_RS20520 PF00872 Transposase, Mutator family SMB554_RS20525 PF00202 Aminotransferase class-III SMB554_RS20530 PF02126 Phosphotriesterase family SMB554_RS20535 PF07729 FCD domain SMB554_RS20535 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS20540 PF01425 Amidase SMB554_RS20545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS20550 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20555 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS20560 PF00005 ABC transporter SMB554_RS20565 PF00005 ABC transporter SMB554_RS20565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS20570 PF00202 Aminotransferase class-III SMB554_RS20575 PF00171 Aldehyde dehydrogenase family SMB554_RS20615 PF03577 Peptidase family C69 SMB554_RS20625 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20630 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS20630 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS20635 PF00005 ABC transporter SMB554_RS20640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS20640 PF00005 ABC transporter SMB554_RS20660 PF01695 IstB-like ATP binding protein SMB554_RS20665 PF01613 Flavin reductase like domain SMB554_RS20680 PF03466 LysR substrate binding domain SMB554_RS20680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS20685 PF01613 Flavin reductase like domain SMB554_RS20690 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS20690 PF00072 Response regulator receiver domain SMB554_RS20700 PF00027 Cyclic nucleotide-binding domain SMB554_RS20700 PF13545 Crp-like helix-turn-helix domain SMB554_RS20705 PF12900 Pyridoxamine 5'-phosphate oxidase SMB554_RS20710 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS20725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS20725 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SMB554_RS20735 PF12464 Maltose acetyltransferase SMB554_RS20735 PF14602 Hexapeptide repeat of succinyl-transferase SMB554_RS20750 PF00884 Sulfatase SMB554_RS20765 PF01695 IstB-like ATP binding protein SMB554_RS20770 PF00665 Integrase core domain SMB554_RS20780 PF07729 FCD domain SMB554_RS20780 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS20795 PF12697 Alpha/beta hydrolase family SMB554_RS20800 PF01613 Flavin reductase like domain SMB554_RS20805 PF00296 Luciferase-like monooxygenase SMB554_RS20810 PF00171 Aldehyde dehydrogenase family SMB554_RS20825 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20830 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS20835 PF08402 TOBE domain SMB554_RS20835 PF00005 ABC transporter SMB554_RS20840 PF00171 Aldehyde dehydrogenase family SMB554_RS20845 PF01527 Transposase SMB554_RS20850 PF06988 NifT/FixU protein SMB554_RS20850 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMB554_RS20855 PF12838 4Fe-4S dicluster domain SMB554_RS20860 PF02579 Dinitrogenase iron-molybdenum cofactor SMB554_RS20860 PF04055 Radical SAM superfamily SMB554_RS20865 PF00158 Sigma-54 interaction domain SMB554_RS20865 PF02954 Bacterial regulatory protein, Fis family SMB554_RS20880 PF01012 Electron transfer flavoprotein domain SMB554_RS20880 PF00766 Electron transfer flavoprotein FAD-binding domain SMB554_RS20885 PF01012 Electron transfer flavoprotein domain SMB554_RS20905 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SMB554_RS20910 PF00148 Nitrogenase component 1 type Oxidoreductase SMB554_RS20915 PF00148 Nitrogenase component 1 type Oxidoreductase SMB554_RS20915 PF11844 Domain of unknown function (DUF3364) SMB554_RS20920 PF00148 Nitrogenase component 1 type Oxidoreductase SMB554_RS20925 PF02579 Dinitrogenase iron-molybdenum cofactor SMB554_RS20930 PF05082 Rop-like SMB554_RS20935 PF13237 4Fe-4S dicluster domain SMB554_RS20950 PF11089 Exopolysaccharide production repressor SMB554_RS20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS20980 PF03466 LysR substrate binding domain SMB554_RS20980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS20990 PF00685 Sulfotransferase domain SMB554_RS20995 PF00550 Phosphopantetheine attachment site SMB554_RS21000 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS21000 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS21015 PF01507 Phosphoadenosine phosphosulfate reductase family SMB554_RS21020 PF00009 Elongation factor Tu GTP binding domain SMB554_RS21035 PF01061 ABC-2 type transporter SMB554_RS21040 PF00005 ABC transporter SMB554_RS21045 PF00535 Glycosyl transferase family 2 SMB554_RS21050 PF01522 Polysaccharide deacetylase SMB554_RS21055 PF02474 Nodulation protein A (NodA) SMB554_RS21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS21060 PF03466 LysR substrate binding domain SMB554_RS21070 PF00148 Nitrogenase component 1 type Oxidoreductase SMB554_RS21075 PF01575 MaoC like domain SMB554_RS21080 PF01527 Transposase SMB554_RS21085 PF00589 Phage integrase family SMB554_RS21085 PF02899 Phage integrase, N-terminal SAM-like domain SMB554_RS21090 PF00589 Phage integrase family SMB554_RS21095 PF02899 Phage integrase, N-terminal SAM-like domain SMB554_RS21095 PF00589 Phage integrase family SMB554_RS21110 PF00873 AcrB/AcrD/AcrF family SMB554_RS21115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS21120 PF01380 SIS domain SMB554_RS21140 PF00817 impB/mucB/samB family SMB554_RS21140 PF11799 impB/mucB/samB family C-terminal domain SMB554_RS21140 PF11798 IMS family HHH motif SMB554_RS21145 PF11799 impB/mucB/samB family C-terminal domain SMB554_RS21145 PF00817 impB/mucB/samB family SMB554_RS21145 PF11798 IMS family HHH motif SMB554_RS21150 PF00817 impB/mucB/samB family SMB554_RS21150 PF11799 impB/mucB/samB family C-terminal domain SMB554_RS21180 PF07929 Plasmid pRiA4b ORF-3-like protein SMB554_RS21185 PF03230 Antirestriction protein SMB554_RS21265 PF02534 Type IV secretory system Conjugative DNA transfer SMB554_RS21280 PF01443 Viral (Superfamily 1) RNA helicase SMB554_RS21280 PF03389 MobA/MobL family SMB554_RS21280 PF17841 BID domain of Bartonella effector protein (Bep) SMB554_RS21285 PF00924 Mechanosensitive ion channel SMB554_RS21320 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS21325 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS21330 PF00005 ABC transporter SMB554_RS21330 PF08402 TOBE domain SMB554_RS21340 PF00202 Aminotransferase class-III SMB554_RS21345 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS21345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS21345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS21355 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS21355 PF00072 Response regulator receiver domain SMB554_RS21370 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS21370 PF00072 Response regulator receiver domain SMB554_RS21375 PF03744 6-carboxyhexanoate--CoA ligase SMB554_RS21375 PF00155 Aminotransferase class I and II SMB554_RS21440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS21440 PF03466 LysR substrate binding domain SMB554_RS21445 PF00248 Aldo/keto reductase family SMB554_RS21465 PF03466 LysR substrate binding domain SMB554_RS21465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS21470 PF12852 Cupin SMB554_RS21470 PF12833 Helix-turn-helix domain SMB554_RS21495 PF12801 4Fe-4S binding domain SMB554_RS21495 PF04205 FMN-binding domain SMB554_RS21500 PF18764 Nitrous oxide reductase propeller repeat SMB554_RS21500 PF13473 Cupredoxin-like domain SMB554_RS21500 PF18793 Nitrous oxide reductase propeller repeat 2 SMB554_RS21510 PF00005 ABC transporter SMB554_RS21515 PF12679 ABC-2 family transporter protein SMB554_RS21520 PF05573 NosL SMB554_RS21530 PF00970 Oxidoreductase FAD-binding domain SMB554_RS21530 PF00175 Oxidoreductase NAD-binding domain SMB554_RS21530 PF00042 Globin SMB554_RS21545 PF01814 Hemerythrin HHE cation binding domain SMB554_RS21545 PF04405 Domain of Unknown function (DUF542) SMB554_RS21555 PF05425 Copper resistance protein D SMB554_RS21575 PF03597 Cytochrome oxidase maturation protein cbb3-type SMB554_RS21585 PF05751 FixH SMB554_RS21590 PF12801 4Fe-4S binding domain SMB554_RS21590 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase SMB554_RS21590 PF13746 4Fe-4S dicluster domain SMB554_RS21595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS21595 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP SMB554_RS21610 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS21615 PF12900 Pyridoxamine 5'-phosphate oxidase SMB554_RS21620 PF00027 Cyclic nucleotide-binding domain SMB554_RS21620 PF13545 Crp-like helix-turn-helix domain SMB554_RS21630 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS21630 PF00072 Response regulator receiver domain SMB554_RS21635 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS21635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS21635 PF00989 PAS fold SMB554_RS21645 PF03264 NapC/NirT cytochrome c family, N-terminal region SMB554_RS21650 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SMB554_RS21655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS21655 PF00384 Molybdopterin oxidoreductase SMB554_RS21655 PF01568 Molydopterin dinucleotide binding domain SMB554_RS21670 PF06796 Periplasmic nitrate reductase protein NapE SMB554_RS21675 PF00127 Copper binding proteins, plastocyanin/azurin family SMB554_RS21680 PF13545 Crp-like helix-turn-helix domain SMB554_RS21680 PF00027 Cyclic nucleotide-binding domain SMB554_RS21690 PF00394 Multicopper oxidase SMB554_RS21690 PF07732 Multicopper oxidase SMB554_RS21705 PF01883 Iron-sulfur cluster assembly protein SMB554_RS21735 PF04055 Radical SAM superfamily SMB554_RS21740 PF00092 von Willebrand factor type A domain SMB554_RS21745 PF08406 CbbQ/NirQ/NorQ C-terminal SMB554_RS21745 PF07728 AAA domain (dynein-related subfamily) SMB554_RS21750 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS21755 PF00034 Cytochrome c SMB554_RS21765 PF00510 Cytochrome c oxidase subunit III SMB554_RS21785 PF02441 Flavoprotein SMB554_RS21790 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SMB554_RS21800 PF01136 Peptidase family U32 SMB554_RS21805 PF01136 Peptidase family U32 SMB554_RS21820 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS21820 PF00107 Zinc-binding dehydrogenase SMB554_RS21825 PF06912 Protein of unknown function (DUF1275) SMB554_RS21830 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS21835 PF07690 Major Facilitator Superfamily SMB554_RS21840 PF00437 Type II/IV secretion system protein SMB554_RS21845 PF03743 Bacterial conjugation TrbI-like protein SMB554_RS21850 PF03524 Conjugal transfer protein SMB554_RS21855 PF04335 VirB8 protein SMB554_RS21865 PF04610 TrbL/VirB6 plasmid conjugal transfer protein SMB554_RS21875 PF07996 Type IV secretion system proteins SMB554_RS21880 PF03135 CagE, TrbE, VirB family, component of type IV transporter system SMB554_RS21885 PF05101 Type IV secretory pathway, VirB3-like protein SMB554_RS21890 PF04956 TrbC/VIRB2 family SMB554_RS21920 PF00561 alpha/beta hydrolase fold SMB554_RS21925 PF00083 Sugar (and other) transporter SMB554_RS21930 PF00557 Metallopeptidase family M24 SMB554_RS21940 PF09370 Phosphoenolpyruvate hydrolase-like SMB554_RS21960 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS21965 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS21975 PF00005 ABC transporter SMB554_RS21975 PF03459 TOBE domain SMB554_RS21975 PF17912 MalK OB fold domain SMB554_RS21980 PF03459 TOBE domain SMB554_RS21980 PF00005 ABC transporter SMB554_RS21980 PF17912 MalK OB fold domain SMB554_RS21985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS21985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS21990 PF07729 FCD domain SMB554_RS21990 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS21995 PF13378 Enolase C-terminal domain-like SMB554_RS21995 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS22000 PF01261 Xylose isomerase-like TIM barrel SMB554_RS22005 PF01261 Xylose isomerase-like TIM barrel SMB554_RS22025 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMB554_RS22025 PF10996 Beta-Casp domain SMB554_RS22025 PF00753 Metallo-beta-lactamase superfamily SMB554_RS22045 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22050 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22070 PF00005 ABC transporter SMB554_RS22070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS22085 PF00005 ABC transporter SMB554_RS22085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS22090 PF00005 ABC transporter SMB554_RS22090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS22095 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS22095 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22100 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS22110 PF01425 Amidase SMB554_RS22120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS22125 PF04324 BFD-like [2Fe-2S] binding domain SMB554_RS22125 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS22135 PF16350 FAD dependent oxidoreductase central domain SMB554_RS22135 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS22135 PF01266 FAD dependent oxidoreductase SMB554_RS22135 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS22140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS22140 PF03466 LysR substrate binding domain SMB554_RS22145 PF01012 Electron transfer flavoprotein domain SMB554_RS22145 PF00766 Electron transfer flavoprotein FAD-binding domain SMB554_RS22150 PF01012 Electron transfer flavoprotein domain SMB554_RS22165 PF00106 short chain dehydrogenase SMB554_RS22170 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS22170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS22170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS22175 PF00248 Aldo/keto reductase family SMB554_RS22180 PF05161 MOFRL family SMB554_RS22180 PF13660 Domain of unknown function (DUF4147) SMB554_RS22185 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS22190 PF01144 Coenzyme A transferase SMB554_RS22195 PF00248 Aldo/keto reductase family SMB554_RS22215 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS22215 PF01348 Type II intron maturase SMB554_RS22235 PF00732 GMC oxidoreductase SMB554_RS22235 PF05199 GMC oxidoreductase SMB554_RS22240 PF00171 Aldehyde dehydrogenase family SMB554_RS22245 PF00107 Zinc-binding dehydrogenase SMB554_RS22245 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS22250 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS22255 PF00005 ABC transporter SMB554_RS22260 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS22270 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS22270 PF17938 Tetracyclin repressor-like, C-terminal domain SMB554_RS22275 PF00107 Zinc-binding dehydrogenase SMB554_RS22275 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS22285 PF00005 ABC transporter SMB554_RS22285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS22290 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22290 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS22295 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS22305 PF00701 Dihydrodipicolinate synthetase family SMB554_RS22310 PF07729 FCD domain SMB554_RS22310 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS22320 PF07690 Major Facilitator Superfamily SMB554_RS22330 PF00108 Thiolase, N-terminal domain SMB554_RS22330 PF02803 Thiolase, C-terminal domain SMB554_RS22335 PF00106 short chain dehydrogenase SMB554_RS22340 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term SMB554_RS22340 PF12833 Helix-turn-helix domain SMB554_RS22355 PF02615 Malate/L-lactate dehydrogenase SMB554_RS22360 PF13378 Enolase C-terminal domain-like SMB554_RS22360 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS22365 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMB554_RS22370 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22375 PF00005 ABC transporter SMB554_RS22375 PF00571 CBS domain SMB554_RS22380 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22385 PF00857 Isochorismatase family SMB554_RS22390 PF00557 Metallopeptidase family M24 SMB554_RS22395 PF12833 Helix-turn-helix domain SMB554_RS22400 PF06253 Trimethylamine methyltransferase (MTTB) SMB554_RS22405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS22405 PF03466 LysR substrate binding domain SMB554_RS22410 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS22410 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS22410 PF16350 FAD dependent oxidoreductase central domain SMB554_RS22410 PF01266 FAD dependent oxidoreductase SMB554_RS22420 PF07690 Major Facilitator Superfamily SMB554_RS22425 PF00034 Cytochrome c SMB554_RS22430 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS22435 PF01799 [2Fe-2S] binding domain SMB554_RS22435 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS22440 PF03466 LysR substrate binding domain SMB554_RS22440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS22450 PF00266 Aminotransferase class-V SMB554_RS22455 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS22460 PF00355 Rieske [2Fe-2S] domain SMB554_RS22460 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS22475 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS22475 PF07729 FCD domain SMB554_RS22480 PF02608 ABC transporter substrate-binding protein PnrA-like SMB554_RS22485 PF00005 ABC transporter SMB554_RS22490 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS22495 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS22505 PF00146 NADH dehydrogenase SMB554_RS22510 PF12838 4Fe-4S dicluster domain SMB554_RS22520 PF12838 4Fe-4S dicluster domain SMB554_RS22520 PF01568 Molydopterin dinucleotide binding domain SMB554_RS22520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS22520 PF00384 Molybdopterin oxidoreductase SMB554_RS22520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SMB554_RS22525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SMB554_RS22525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SMB554_RS22525 PF10531 SLBB domain SMB554_RS22535 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SMB554_RS22540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SMB554_RS22545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SMB554_RS22550 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SMB554_RS22555 PF00361 Proton-conducting membrane transporter SMB554_RS22560 PF00361 Proton-conducting membrane transporter SMB554_RS22560 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus SMB554_RS22565 PF00361 Proton-conducting membrane transporter SMB554_RS22575 PF00361 Proton-conducting membrane transporter SMB554_RS22580 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SMB554_RS22585 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SMB554_RS22595 PF08448 PAS fold SMB554_RS22595 PF08447 PAS fold SMB554_RS22595 PF00563 EAL domain SMB554_RS22595 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS22600 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS22600 PF00072 Response regulator receiver domain SMB554_RS22605 PF01739 CheR methyltransferase, SAM binding domain SMB554_RS22605 PF03705 CheR methyltransferase, all-alpha domain SMB554_RS22615 PF02743 Cache domain SMB554_RS22615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SMB554_RS22615 PF00672 HAMP domain SMB554_RS22620 PF01627 Hpt domain SMB554_RS22620 PF01584 CheW-like domain SMB554_RS22620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS22620 PF00072 Response regulator receiver domain SMB554_RS22625 PF01339 CheB methylesterase SMB554_RS22640 PF00437 Type II/IV secretion system protein SMB554_RS22655 PF10609 NUBPL iron-transfer P-loop NTPase SMB554_RS22680 PF00924 Mechanosensitive ion channel SMB554_RS22680 PF12795 Mechanosensitive ion channel porin domain SMB554_RS22680 PF12794 Mechanosensitive ion channel inner membrane domain 1 SMB554_RS22685 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS22695 PF01527 Transposase SMB554_RS22700 PF00722 Glycosyl hydrolases family 16 SMB554_RS22700 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SMB554_RS22720 PF02661 Fic/DOC family SMB554_RS22720 PF13784 Fic/DOC family N-terminal SMB554_RS22725 PF13191 AAA ATPase domain SMB554_RS22725 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS22730 PF00355 Rieske [2Fe-2S] domain SMB554_RS22750 PF02254 TrkA-N domain SMB554_RS22750 PF00999 Sodium/hydrogen exchanger family SMB554_RS22755 PF03466 LysR substrate binding domain SMB554_RS22755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS22760 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS22795 PF03466 LysR substrate binding domain SMB554_RS22795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS22825 PF00005 ABC transporter SMB554_RS22825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS22830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS22830 PF00005 ABC transporter SMB554_RS22835 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22840 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS22845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS22880 PF00583 Acetyltransferase (GNAT) family SMB554_RS22905 PF03806 AbgT putative transporter family SMB554_RS22910 PF01546 Peptidase family M20/M25/M40 SMB554_RS22910 PF07687 Peptidase dimerisation domain SMB554_RS22915 PF03600 Citrate transporter SMB554_RS22915 PF02080 TrkA-C domain SMB554_RS22945 PF00872 Transposase, Mutator family SMB554_RS22960 PF00884 Sulfatase SMB554_RS22965 PF00989 PAS fold SMB554_RS22965 PF08447 PAS fold SMB554_RS22965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS22965 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS22965 PF13493 Domain of unknown function (DUF4118) SMB554_RS22965 PF13426 PAS domain SMB554_RS22970 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS22970 PF00072 Response regulator receiver domain SMB554_RS22975 PF00072 Response regulator receiver domain SMB554_RS22975 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS22990 PF01527 Transposase SMB554_RS23015 PF06772 Bacterial low temperature requirement A protein (LtrA) SMB554_RS23020 PF05443 ROS/MUCR transcriptional regulator protein SMB554_RS23025 PF00491 Arginase family SMB554_RS23035 PF01979 Amidohydrolase family SMB554_RS23035 PF13382 Adenine deaminase C-terminal domain SMB554_RS23040 PF00860 Permease family SMB554_RS23045 PF13382 Adenine deaminase C-terminal domain SMB554_RS23045 PF01979 Amidohydrolase family SMB554_RS23050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23050 PF03466 LysR substrate binding domain SMB554_RS23060 PF00857 Isochorismatase family SMB554_RS23065 PF12833 Helix-turn-helix domain SMB554_RS23065 PF02311 AraC-like ligand binding domain SMB554_RS23070 PF13977 BetI-type transcriptional repressor, C-terminal SMB554_RS23070 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS23075 PF00561 alpha/beta hydrolase fold SMB554_RS23085 PF00171 Aldehyde dehydrogenase family SMB554_RS23105 PF01695 IstB-like ATP binding protein SMB554_RS23110 PF00665 Integrase core domain SMB554_RS23120 PF00970 Oxidoreductase FAD-binding domain SMB554_RS23120 PF00042 Globin SMB554_RS23120 PF00175 Oxidoreductase NAD-binding domain SMB554_RS23125 PF03466 LysR substrate binding domain SMB554_RS23125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23130 PF03601 Conserved hypothetical protein 698 SMB554_RS23150 PF00005 ABC transporter SMB554_RS23155 PF01032 FecCD transport family SMB554_RS23160 PF01032 FecCD transport family SMB554_RS23190 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS23195 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS23200 PF00005 ABC transporter SMB554_RS23200 PF08402 TOBE domain SMB554_RS23215 PF07729 FCD domain SMB554_RS23215 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS23225 PF00202 Aminotransferase class-III SMB554_RS23285 PF03466 LysR substrate binding domain SMB554_RS23285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23290 PF13191 AAA ATPase domain SMB554_RS23290 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS23305 PF00171 Aldehyde dehydrogenase family SMB554_RS23335 PF02705 K+ potassium transporter SMB554_RS23355 PF00561 alpha/beta hydrolase fold SMB554_RS23360 PF00753 Metallo-beta-lactamase superfamily SMB554_RS23360 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain SMB554_RS23360 PF10996 Beta-Casp domain SMB554_RS23365 PF05977 Transmembrane secretion effector SMB554_RS23375 PF07969 Amidohydrolase family SMB554_RS23385 PF00857 Isochorismatase family SMB554_RS23395 PF12833 Helix-turn-helix domain SMB554_RS23395 PF02311 AraC-like ligand binding domain SMB554_RS23400 PF02311 AraC-like ligand binding domain SMB554_RS23400 PF12833 Helix-turn-helix domain SMB554_RS23430 PF07995 Glucose / Sorbosone dehydrogenase SMB554_RS23440 PF01546 Peptidase family M20/M25/M40 SMB554_RS23440 PF07687 Peptidase dimerisation domain SMB554_RS23445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS23460 PF00171 Aldehyde dehydrogenase family SMB554_RS23465 PF00180 Isocitrate/isopropylmalate dehydrogenase SMB554_RS23470 PF00171 Aldehyde dehydrogenase family SMB554_RS23475 PF01266 FAD dependent oxidoreductase SMB554_RS23485 PF18014 Acetyltransferase (GNAT) domain SMB554_RS23485 PF13673 Acetyltransferase (GNAT) domain SMB554_RS23490 PF00202 Aminotransferase class-III SMB554_RS23500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS23505 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS23510 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS23510 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS23515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS23515 PF00005 ABC transporter SMB554_RS23520 PF01037 Lrp/AsnC ligand binding domain SMB554_RS23525 PF01266 FAD dependent oxidoreductase SMB554_RS23535 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS23535 PF13291 ACT domain SMB554_RS23545 PF01032 FecCD transport family SMB554_RS23550 PF01032 FecCD transport family SMB554_RS23555 PF00005 ABC transporter SMB554_RS23570 PF00873 AcrB/AcrD/AcrF family SMB554_RS23585 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS23590 PF03466 LysR substrate binding domain SMB554_RS23590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23595 PF01641 SelR domain SMB554_RS23600 PF01625 Peptide methionine sulfoxide reductase SMB554_RS23615 PF05922 Peptidase inhibitor I9 SMB554_RS23615 PF00082 Subtilase family SMB554_RS23630 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS23630 PF00912 Transglycosylase SMB554_RS23630 PF17092 Penicillin-binding protein OB-like domain SMB554_RS23635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23635 PF03466 LysR substrate binding domain SMB554_RS23645 PF01494 FAD binding domain SMB554_RS23650 PF07690 Major Facilitator Superfamily SMB554_RS23660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS23660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS23665 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS23665 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS23670 PF01799 [2Fe-2S] binding domain SMB554_RS23670 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS23680 PF00872 Transposase, Mutator family SMB554_RS23685 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS23710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23710 PF03466 LysR substrate binding domain SMB554_RS23715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23715 PF03466 LysR substrate binding domain SMB554_RS23720 PF03358 NADPH-dependent FMN reductase SMB554_RS23730 PF01494 FAD binding domain SMB554_RS23735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23735 PF03466 LysR substrate binding domain SMB554_RS23775 PF03466 LysR substrate binding domain SMB554_RS23775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23785 PF03466 LysR substrate binding domain SMB554_RS23795 PF07690 Major Facilitator Superfamily SMB554_RS23800 PF01638 HxlR-like helix-turn-helix SMB554_RS23805 PF10503 Esterase PHB depolymerase SMB554_RS23810 PF04072 Leucine carboxyl methyltransferase SMB554_RS23820 PF03466 LysR substrate binding domain SMB554_RS23820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23845 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS23850 PF00596 Class II Aldolase and Adducin N-terminal domain SMB554_RS23860 PF03466 LysR substrate binding domain SMB554_RS23860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS23870 PF03466 LysR substrate binding domain SMB554_RS23875 PF09957 Bacterial antitoxin of type II TA system, VapB SMB554_RS23880 PF01850 PIN domain SMB554_RS23885 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS23890 PF00106 short chain dehydrogenase SMB554_RS23895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS23900 PF00106 short chain dehydrogenase SMB554_RS23905 PF00561 alpha/beta hydrolase fold SMB554_RS23910 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS23910 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS23910 PF14765 Polyketide synthase dehydratase SMB554_RS23910 PF00550 Phosphopantetheine attachment site SMB554_RS23910 PF08659 KR domain SMB554_RS23910 PF16197 Ketoacyl-synthetase C-terminal extension SMB554_RS23910 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS23910 PF00698 Acyl transferase domain SMB554_RS23930 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMB554_RS23975 PF01361 Tautomerase enzyme SMB554_RS23980 PF16197 Ketoacyl-synthetase C-terminal extension SMB554_RS23980 PF00550 Phosphopantetheine attachment site SMB554_RS23980 PF00698 Acyl transferase domain SMB554_RS23980 PF08659 KR domain SMB554_RS23980 PF02801 Beta-ketoacyl synthase, C-terminal domain SMB554_RS23980 PF00109 Beta-ketoacyl synthase, N-terminal domain SMB554_RS23980 PF09277 Erythronolide synthase, docking SMB554_RS23980 PF14765 Polyketide synthase dehydratase SMB554_RS23980 PF08990 Erythronolide synthase docking SMB554_RS23980 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS23995 PF00561 alpha/beta hydrolase fold SMB554_RS24000 PF13493 Domain of unknown function (DUF4118) SMB554_RS24000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS24000 PF13426 PAS domain SMB554_RS24000 PF00989 PAS fold SMB554_RS24000 PF08447 PAS fold SMB554_RS24000 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS24005 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS24005 PF00072 Response regulator receiver domain SMB554_RS24010 PF00072 Response regulator receiver domain SMB554_RS24010 PF02954 Bacterial regulatory protein, Fis family SMB554_RS24010 PF00158 Sigma-54 interaction domain SMB554_RS24015 PF12833 Helix-turn-helix domain SMB554_RS24015 PF12852 Cupin SMB554_RS24025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS24025 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS24030 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS24030 PF00107 Zinc-binding dehydrogenase SMB554_RS24065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS24080 PF01380 SIS domain SMB554_RS24085 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS24090 PF02423 Ornithine cyclodeaminase/mu-crystallin family SMB554_RS24095 PF00005 ABC transporter SMB554_RS24100 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS24105 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS24110 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS24145 PF02735 Ku70/Ku80 beta-barrel domain SMB554_RS24170 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS24170 PF01068 ATP dependent DNA ligase domain SMB554_RS24170 PF13298 DNA polymerase Ligase (LigD) SMB554_RS24210 PF01070 FMN-dependent dehydrogenase SMB554_RS24220 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS24220 PF07702 UTRA domain SMB554_RS24225 PF00107 Zinc-binding dehydrogenase SMB554_RS24225 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS24230 PF00815 Histidinol dehydrogenase SMB554_RS24235 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS24250 PF00005 ABC transporter SMB554_RS24250 PF08402 TOBE domain SMB554_RS24260 PF00155 Aminotransferase class I and II SMB554_RS24275 PF06441 Epoxide hydrolase N terminus SMB554_RS24285 PF06441 Epoxide hydrolase N terminus SMB554_RS24290 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS24290 PF00072 Response regulator receiver domain SMB554_RS24295 PF00072 Response regulator receiver domain SMB554_RS24295 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS24300 PF13426 PAS domain SMB554_RS24300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS24300 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS24300 PF00989 PAS fold SMB554_RS24300 PF08447 PAS fold SMB554_RS24300 PF13493 Domain of unknown function (DUF4118) SMB554_RS24310 PF03358 NADPH-dependent FMN reductase SMB554_RS24320 PF00175 Oxidoreductase NAD-binding domain SMB554_RS24320 PF00970 Oxidoreductase FAD-binding domain SMB554_RS24320 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS24325 PF00174 Oxidoreductase molybdopterin binding domain SMB554_RS24335 PF06441 Epoxide hydrolase N terminus SMB554_RS24340 PF13493 Domain of unknown function (DUF4118) SMB554_RS24340 PF00989 PAS fold SMB554_RS24340 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS24340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS24340 PF13426 PAS domain SMB554_RS24340 PF08447 PAS fold SMB554_RS24345 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS24345 PF00072 Response regulator receiver domain SMB554_RS24350 PF00072 Response regulator receiver domain SMB554_RS24350 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS24370 PF01799 [2Fe-2S] binding domain SMB554_RS24370 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS24385 PF02627 Carboxymuconolactone decarboxylase family SMB554_RS24400 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS24405 PF04224 Protein of unknown function, DUF417 SMB554_RS24415 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS24420 PF03466 LysR substrate binding domain SMB554_RS24420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS24425 PF01641 SelR domain SMB554_RS24430 PF01625 Peptide methionine sulfoxide reductase SMB554_RS24450 PF16867 Dimethlysulfonioproprionate lyase SMB554_RS24455 PF06441 Epoxide hydrolase N terminus SMB554_RS24480 PF01548 Transposase SMB554_RS24480 PF02371 Transposase IS116/IS110/IS902 family SMB554_RS24490 PF05406 WGR domain SMB554_RS24505 PF01527 Transposase SMB554_RS24525 PF02534 Type IV secretory system Conjugative DNA transfer SMB554_RS24530 PF00072 Response regulator receiver domain SMB554_RS24530 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS24545 PF00437 Type II/IV secretion system protein SMB554_RS24550 PF03743 Bacterial conjugation TrbI-like protein SMB554_RS24555 PF03524 Conjugal transfer protein SMB554_RS24560 PF04335 VirB8 protein SMB554_RS24565 PF17413 Outer membrane lipoprotein virB7 SMB554_RS24570 PF04610 TrbL/VirB6 plasmid conjugal transfer protein SMB554_RS24580 PF03135 CagE, TrbE, VirB family, component of type IV transporter system SMB554_RS24585 PF05101 Type IV secretory pathway, VirB3-like protein SMB554_RS24590 PF04956 TrbC/VIRB2 family SMB554_RS24595 PF01464 Transglycosylase SLT domain SMB554_RS24615 PF00872 Transposase, Mutator family SMB554_RS24625 PF01209 ubiE/COQ5 methyltransferase family SMB554_RS24630 PF00067 Cytochrome P450 SMB554_RS24635 PF05443 ROS/MUCR transcriptional regulator protein SMB554_RS24655 PF01235 Sodium:alanine symporter family SMB554_RS24680 PF00313 'Cold-shock' DNA-binding domain SMB554_RS24735 PF01381 Helix-turn-helix SMB554_RS24765 PF00665 Integrase core domain SMB554_RS24770 PF01695 IstB-like ATP binding protein SMB554_RS24815 PF00550 Phosphopantetheine attachment site SMB554_RS24830 PF00166 Chaperonin 10 Kd subunit SMB554_RS24835 PF00118 TCP-1/cpn60 chaperonin family SMB554_RS24850 PF00296 Luciferase-like monooxygenase SMB554_RS24860 PF01381 Helix-turn-helix SMB554_RS24875 PF08447 PAS fold SMB554_RS24875 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS24875 PF00563 EAL domain SMB554_RS24875 PF08448 PAS fold SMB554_RS24885 PF00194 Eukaryotic-type carbonic anhydrase SMB554_RS24905 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS24910 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMB554_RS24910 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMB554_RS24910 PF00034 Cytochrome c SMB554_RS24915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS24920 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS24925 PF13360 PQQ-like domain SMB554_RS24940 PF02308 MgtC family SMB554_RS24975 PF01339 CheB methylesterase SMB554_RS24975 PF08448 PAS fold SMB554_RS24975 PF03705 CheR methyltransferase, all-alpha domain SMB554_RS24975 PF01739 CheR methyltransferase, SAM binding domain SMB554_RS25145 PF03466 LysR substrate binding domain SMB554_RS25145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS25150 PF01042 Endoribonuclease L-PSP SMB554_RS25155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS25160 PF03466 LysR substrate binding domain SMB554_RS25160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS25165 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS25165 PF17092 Penicillin-binding protein OB-like domain SMB554_RS25165 PF00912 Transglycosylase SMB554_RS25175 PF03717 Penicillin-binding Protein dimerisation domain SMB554_RS25175 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS25195 PF00563 EAL domain SMB554_RS25195 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS25195 PF01590 GAF domain SMB554_RS25195 PF00360 Phytochrome region SMB554_RS25200 PF00480 ROK family SMB554_RS25210 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS25215 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS25220 PF08402 TOBE domain SMB554_RS25220 PF00005 ABC transporter SMB554_RS25225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS25225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS25230 PF13427 Domain of unknown function (DUF4111) SMB554_RS25230 PF18765 Polymerase beta, Nucleotidyltransferase SMB554_RS25245 PF13361 UvrD-like helicase C-terminal domain SMB554_RS25245 PF00580 UvrD/REP helicase N-terminal domain SMB554_RS25255 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS25255 PF00072 Response regulator receiver domain SMB554_RS25260 PF13492 GAF domain SMB554_RS25260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS25260 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS25260 PF02702 Osmosensitive K+ channel His kinase sensor domain SMB554_RS25260 PF13493 Domain of unknown function (DUF4118) SMB554_RS25265 PF02669 K+-transporting ATPase, c chain SMB554_RS25275 PF03814 Potassium-transporting ATPase A subunit SMB554_RS25290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS25290 PF03466 LysR substrate binding domain SMB554_RS25295 PF00106 short chain dehydrogenase SMB554_RS25315 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS25315 PF01799 [2Fe-2S] binding domain SMB554_RS25315 PF10518 TAT (twin-arginine translocation) pathway signal sequence SMB554_RS25320 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS25320 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS25325 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS25325 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS25330 PF11799 impB/mucB/samB family C-terminal domain SMB554_RS25330 PF00817 impB/mucB/samB family SMB554_RS25330 PF11798 IMS family HHH motif SMB554_RS25340 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS25345 PF01925 Sulfite exporter TauE/SafE SMB554_RS25355 PF01425 Amidase SMB554_RS25360 PF00005 ABC transporter SMB554_RS25365 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS25370 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS25375 PF07969 Amidohydrolase family SMB554_RS25385 PF07690 Major Facilitator Superfamily SMB554_RS25390 PF00141 Peroxidase SMB554_RS25395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS25395 PF03466 LysR substrate binding domain SMB554_RS25405 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS25410 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS25410 PF00107 Zinc-binding dehydrogenase SMB554_RS25415 PF16326 ABC transporter C-terminal domain SMB554_RS25415 PF12848 ABC transporter SMB554_RS25415 PF00005 ABC transporter SMB554_RS25420 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS25420 PF08361 MAATS-type transcriptional repressor, C-terminal region SMB554_RS25425 PF02566 OsmC-like protein SMB554_RS25430 PF11800 Replication protein C C-terminal region SMB554_RS25430 PF03428 Replication protein C N-terminal domain SMB554_RS25435 PF07506 RepB plasmid partitioning protein SMB554_RS25435 PF02195 ParB-like nuclease domain SMB554_RS25440 PF13614 AAA domain SMB554_RS25440 PF00376 MerR family regulatory protein SMB554_RS25445 PF13416 Bacterial extracellular solute-binding protein SMB554_RS25450 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS25455 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS25460 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 SMB554_RS25460 PF00703 Glycosyl hydrolases family 2 SMB554_RS25460 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SMB554_RS25465 PF00005 ABC transporter SMB554_RS25465 PF17912 MalK OB fold domain SMB554_RS25470 PF03807 NADP oxidoreductase coenzyme F420-dependent SMB554_RS25470 PF14748 Pyrroline-5-carboxylate reductase dimerisation SMB554_RS25475 PF03466 LysR substrate binding domain SMB554_RS25475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS25480 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS25490 PF06628 Catalase-related immune-responsive SMB554_RS25490 PF18011 C-terminal domain found in long catalases SMB554_RS25490 PF00199 Catalase SMB554_RS25495 PF01068 ATP dependent DNA ligase domain SMB554_RS25495 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS25500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS25500 PF03466 LysR substrate binding domain SMB554_RS25520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS25520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS25525 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS25530 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS25535 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS25540 PF00005 ABC transporter SMB554_RS25550 PF13407 Periplasmic binding protein domain SMB554_RS25555 PF00364 Biotin-requiring enzyme SMB554_RS25555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SMB554_RS25555 PF02817 e3 binding domain SMB554_RS25560 PF02780 Transketolase, C-terminal domain SMB554_RS25560 PF02779 Transketolase, pyrimidine binding domain SMB554_RS25565 PF13404 AsnC-type helix-turn-helix domain SMB554_RS25565 PF01037 Lrp/AsnC ligand binding domain SMB554_RS25585 PF01968 Hydantoinase/oxoprolinase SMB554_RS25585 PF05378 Hydantoinase/oxoprolinase N-terminal region SMB554_RS25590 PF00849 RNA pseudouridylate synthase SMB554_RS25590 PF01479 S4 domain SMB554_RS25595 PF03401 Tripartite tricarboxylate transporter family receptor SMB554_RS25605 PF01970 Tripartite tricarboxylate transporter TctA family SMB554_RS25620 PF02627 Carboxymuconolactone decarboxylase family SMB554_RS25625 PF04542 Sigma-70 region 2 SMB554_RS25625 PF08281 Sigma-70, region 4 SMB554_RS25635 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS25635 PF17938 Tetracyclin repressor-like, C-terminal domain SMB554_RS25640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS25645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS25650 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS25655 PF08501 Shikimate dehydrogenase substrate binding domain SMB554_RS25655 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SMB554_RS25670 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS25670 PF00155 Aminotransferase class I and II SMB554_RS25675 PF00892 EamA-like transporter family SMB554_RS25685 PF07756 Protein of unknown function (DUF1612) SMB554_RS25685 PF11972 HTH DNA binding domain SMB554_RS25695 PF03428 Replication protein C N-terminal domain SMB554_RS25695 PF11800 Replication protein C C-terminal region SMB554_RS25700 PF07506 RepB plasmid partitioning protein SMB554_RS25700 PF02195 ParB-like nuclease domain SMB554_RS25705 PF13614 AAA domain SMB554_RS25715 PF07702 UTRA domain SMB554_RS25715 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS25720 PF00679 Elongation factor G C-terminus SMB554_RS25720 PF14492 Elongation Factor G, domain II SMB554_RS25720 PF00009 Elongation factor Tu GTP binding domain SMB554_RS25720 PF03764 Elongation factor G, domain IV SMB554_RS25730 PF00561 alpha/beta hydrolase fold SMB554_RS25740 PF16868 NMT1-like family SMB554_RS25760 PF01032 FecCD transport family SMB554_RS25765 PF00005 ABC transporter SMB554_RS25770 PF01209 ubiE/COQ5 methyltransferase family SMB554_RS25790 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH SMB554_RS25795 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SMB554_RS25820 PF07311 Dodecin SMB554_RS25825 PF01235 Sodium:alanine symporter family SMB554_RS25830 PF01740 STAS domain SMB554_RS25830 PF00916 Sulfate permease family SMB554_RS25840 PF07690 Major Facilitator Superfamily SMB554_RS25845 PF13407 Periplasmic binding protein domain SMB554_RS25865 PF00106 short chain dehydrogenase SMB554_RS25870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS25870 PF07730 Histidine kinase SMB554_RS25875 PF00072 Response regulator receiver domain SMB554_RS25875 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS25890 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS25890 PF00107 Zinc-binding dehydrogenase SMB554_RS25890 PF13823 Alcohol dehydrogenase GroES-associated SMB554_RS25935 PF05139 Erythromycin esterase SMB554_RS25935 PF00156 Phosphoribosyl transferase domain SMB554_RS25950 PF05974 Domain of unknown function (DUF892) SMB554_RS25960 PF03706 Lysylphosphatidylglycerol synthase TM region SMB554_RS25970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS25970 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS25970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS25995 PF00128 Alpha amylase, catalytic domain SMB554_RS25995 PF16657 Maltogenic Amylase, C-terminal domain SMB554_RS26000 PF00296 Luciferase-like monooxygenase SMB554_RS26005 PF01266 FAD dependent oxidoreductase SMB554_RS26010 PF00158 Sigma-54 interaction domain SMB554_RS26010 PF02954 Bacterial regulatory protein, Fis family SMB554_RS26010 PF01590 GAF domain SMB554_RS26025 PF07729 FCD domain SMB554_RS26025 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS26040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS26045 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26050 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS26050 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26055 PF00005 ABC transporter SMB554_RS26055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS26065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS26065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS26070 PF03737 Aldolase/RraA SMB554_RS26075 PF00920 Dehydratase family SMB554_RS26085 PF13439 Glycosyltransferase Family 4 SMB554_RS26100 PF02796 Helix-turn-helix domain of resolvase SMB554_RS26100 PF00239 Resolvase, N terminal domain SMB554_RS26120 PF01053 Cys/Met metabolism PLP-dependent enzyme SMB554_RS26125 PF03466 LysR substrate binding domain SMB554_RS26125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS26130 PF00005 ABC transporter SMB554_RS26135 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS26140 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS26150 PF01979 Amidohydrolase family SMB554_RS26160 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS26160 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS26165 PF01799 [2Fe-2S] binding domain SMB554_RS26165 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS26170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS26170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS26170 PF01799 [2Fe-2S] binding domain SMB554_RS26175 PF07683 Cobalamin synthesis protein cobW C-terminal domain SMB554_RS26175 PF02492 CobW/HypB/UreG, nucleotide-binding domain SMB554_RS26180 PF00860 Permease family SMB554_RS26185 PF02441 Flavoprotein SMB554_RS26190 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SMB554_RS26210 PF00701 Dihydrodipicolinate synthetase family SMB554_RS26215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS26215 PF00005 ABC transporter SMB554_RS26220 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS26220 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26225 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS26240 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMB554_RS26245 PF00465 Iron-containing alcohol dehydrogenase SMB554_RS26250 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS26250 PF07729 FCD domain SMB554_RS26255 PF07005 Sugar-binding N-terminal domain SMB554_RS26255 PF17042 Nucleotide-binding C-terminal domain SMB554_RS26260 PF00459 Inositol monophosphatase family SMB554_RS26275 PF02690 Na+/Pi-cotransporter SMB554_RS26280 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS26285 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26290 PF08402 TOBE domain SMB554_RS26290 PF00005 ABC transporter SMB554_RS26305 PF00459 Inositol monophosphatase family SMB554_RS26325 PF00072 Response regulator receiver domain SMB554_RS26325 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS26335 PF01627 Hpt domain SMB554_RS26335 PF00072 Response regulator receiver domain SMB554_RS26335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SMB554_RS26335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS26335 PF00672 HAMP domain SMB554_RS26335 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS26365 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS26365 PF00107 Zinc-binding dehydrogenase SMB554_RS26370 PF00756 Putative esterase SMB554_RS26375 PF00034 Cytochrome c SMB554_RS26380 PF13360 PQQ-like domain SMB554_RS26430 PF00005 ABC transporter SMB554_RS26435 PF00005 ABC transporter SMB554_RS26445 PF04828 Glutathione-dependent formaldehyde-activating enzyme SMB554_RS26455 PF00834 Ribulose-phosphate 3 epimerase family SMB554_RS26460 PF00004 ATPase family associated with various cellular activities (AAA) SMB554_RS26460 PF17866 AAA lid domain SMB554_RS26465 PF00101 Ribulose bisphosphate carboxylase, small chain SMB554_RS26470 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain SMB554_RS26470 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain SMB554_RS26475 PF01116 Fructose-bisphosphate aldolase class-II SMB554_RS26480 PF02780 Transketolase, C-terminal domain SMB554_RS26480 PF02779 Transketolase, pyrimidine binding domain SMB554_RS26480 PF00456 Transketolase, thiamine diphosphate binding domain SMB554_RS26485 PF00485 Phosphoribulokinase / Uridine kinase family SMB554_RS26490 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SMB554_RS26495 PF03466 LysR substrate binding domain SMB554_RS26495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS26500 PF08042 PqqA family SMB554_RS26505 PF12706 Beta-lactamase superfamily domain SMB554_RS26510 PF03070 TENA/THI-4/PQQC family SMB554_RS26515 PF05402 Coenzyme PQQ synthesis protein D (PqqD) SMB554_RS26520 PF13186 Iron-sulfur cluster-binding domain SMB554_RS26520 PF04055 Radical SAM superfamily SMB554_RS26535 PF03466 LysR substrate binding domain SMB554_RS26535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS26545 PF00578 AhpC/TSA family SMB554_RS26545 PF02683 Cytochrome C biogenesis protein transmembrane region SMB554_RS26545 PF17991 Thioredoxin like C-terminal domain SMB554_RS26550 PF00106 short chain dehydrogenase SMB554_RS26555 PF12833 Helix-turn-helix domain SMB554_RS26555 PF01965 DJ-1/PfpI family SMB554_RS26560 PF00561 alpha/beta hydrolase fold SMB554_RS26570 PF00672 HAMP domain SMB554_RS26570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS26570 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS26575 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS26575 PF00072 Response regulator receiver domain SMB554_RS26580 PF06441 Epoxide hydrolase N terminus SMB554_RS26585 PF06441 Epoxide hydrolase N terminus SMB554_RS26630 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS26635 PF13416 Bacterial extracellular solute-binding protein SMB554_RS26640 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26645 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26655 PF17912 MalK OB fold domain SMB554_RS26655 PF03459 TOBE domain SMB554_RS26655 PF00005 ABC transporter SMB554_RS26675 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS26695 PF13439 Glycosyltransferase Family 4 SMB554_RS26695 PF00534 Glycosyl transferases group 1 SMB554_RS26700 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS26705 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS26710 PF00107 Zinc-binding dehydrogenase SMB554_RS26710 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS26715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS26715 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS26725 PF01658 Myo-inositol-1-phosphate synthase SMB554_RS26765 PF02743 Cache domain SMB554_RS26765 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS26765 PF00672 HAMP domain SMB554_RS26775 PF00701 Dihydrodipicolinate synthetase family SMB554_RS26785 PF02615 Malate/L-lactate dehydrogenase SMB554_RS26790 PF00171 Aldehyde dehydrogenase family SMB554_RS26800 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26805 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26810 PF00005 ABC transporter SMB554_RS26815 PF01266 FAD dependent oxidoreductase SMB554_RS26820 PF05544 Proline racemase SMB554_RS26830 PF05544 Proline racemase SMB554_RS26835 PF02566 OsmC-like protein SMB554_RS26840 PF07690 Major Facilitator Superfamily SMB554_RS26860 PF05853 beta-keto acid cleavage enzyme SMB554_RS26870 PF00202 Aminotransferase class-III SMB554_RS26885 PF13454 FAD-NAD(P)-binding SMB554_RS26890 PF00005 ABC transporter SMB554_RS26890 PF08402 TOBE domain SMB554_RS26895 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26900 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS26910 PF03466 LysR substrate binding domain SMB554_RS26910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS26925 PF01979 Amidohydrolase family SMB554_RS26930 PF00860 Permease family SMB554_RS26935 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS26945 PF16868 NMT1-like family SMB554_RS26955 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS26955 PF07729 FCD domain SMB554_RS26960 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS26965 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS26965 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS26970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS26975 PF00701 Dihydrodipicolinate synthetase family SMB554_RS26980 PF00701 Dihydrodipicolinate synthetase family SMB554_RS26985 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS26990 PF07995 Glucose / Sorbosone dehydrogenase SMB554_RS27005 PF02734 DAK2 domain SMB554_RS27010 PF02733 Dak1 domain SMB554_RS27015 PF02734 DAK2 domain SMB554_RS27020 PF02733 Dak1 domain SMB554_RS27025 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS27030 PF13407 Periplasmic binding protein domain SMB554_RS27035 PF00005 ABC transporter SMB554_RS27040 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS27045 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS27045 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS27055 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS27060 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS27075 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS27080 PF01547 Bacterial extracellular solute-binding protein SMB554_RS27085 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27090 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27095 PF17912 MalK OB fold domain SMB554_RS27095 PF03459 TOBE domain SMB554_RS27095 PF00005 ABC transporter SMB554_RS27105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS27105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS27150 PF03781 Sulfatase-modifying factor enzyme 1 SMB554_RS27165 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS27195 PF00034 Cytochrome c SMB554_RS27195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS27195 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS27200 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS27200 PF01799 [2Fe-2S] binding domain SMB554_RS27205 PF06719 AraC-type transcriptional regulator N-terminus SMB554_RS27205 PF12833 Helix-turn-helix domain SMB554_RS27210 PF00873 AcrB/AcrD/AcrF family SMB554_RS27225 PF10727 Rossmann-like domain SMB554_RS27225 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term SMB554_RS27230 PF13407 Periplasmic binding protein domain SMB554_RS27245 PF00005 ABC transporter SMB554_RS27250 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS27255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS27255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS27270 PF00072 Response regulator receiver domain SMB554_RS27270 PF09308 LuxQ, periplasmic SMB554_RS27270 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS27270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS27275 PF00072 Response regulator receiver domain SMB554_RS27280 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS27300 PF00459 Inositol monophosphatase family SMB554_RS27305 PF00005 ABC transporter SMB554_RS27305 PF08402 TOBE domain SMB554_RS27310 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27320 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS27325 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS27335 PF12704 MacB-like periplasmic core domain SMB554_RS27335 PF02687 FtsX-like permease family SMB554_RS27340 PF00005 ABC transporter SMB554_RS27345 PF02502 Ribose/Galactose Isomerase SMB554_RS27350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS27360 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS27365 PF07729 FCD domain SMB554_RS27365 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS27375 PF01042 Endoribonuclease L-PSP SMB554_RS27380 PF00171 Aldehyde dehydrogenase family SMB554_RS27385 PF00202 Aminotransferase class-III SMB554_RS27390 PF00005 ABC transporter SMB554_RS27390 PF08402 TOBE domain SMB554_RS27395 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27400 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27430 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS27430 PF00107 Zinc-binding dehydrogenase SMB554_RS27435 PF00563 EAL domain SMB554_RS27435 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS27435 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS27450 PF07238 PilZ domain SMB554_RS27450 PF00535 Glycosyl transferase family 2 SMB554_RS27450 PF03552 Cellulose synthase SMB554_RS27455 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS27455 PF07729 FCD domain SMB554_RS27460 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain SMB554_RS27460 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain SMB554_RS27465 PF07005 Sugar-binding N-terminal domain SMB554_RS27465 PF17042 Nucleotide-binding C-terminal domain SMB554_RS27470 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS27470 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS27475 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS27475 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS27480 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS27480 PF01799 [2Fe-2S] binding domain SMB554_RS27510 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS27510 PF01799 [2Fe-2S] binding domain SMB554_RS27515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III SMB554_RS27515 PF00034 Cytochrome c SMB554_RS27515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS27525 PF01968 Hydantoinase/oxoprolinase SMB554_RS27525 PF05378 Hydantoinase/oxoprolinase N-terminal region SMB554_RS27530 PF02538 Hydantoinase B/oxoprolinase SMB554_RS27535 PF08882 Acetone carboxylase gamma subunit SMB554_RS27545 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMB554_RS27550 PF01850 PIN domain SMB554_RS27575 PF13416 Bacterial extracellular solute-binding protein SMB554_RS27580 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27585 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27590 PF00005 ABC transporter SMB554_RS27590 PF08402 TOBE domain SMB554_RS27595 PF02798 Glutathione S-transferase, N-terminal domain SMB554_RS27595 PF00043 Glutathione S-transferase, C-terminal domain SMB554_RS27600 PF00107 Zinc-binding dehydrogenase SMB554_RS27600 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS27605 PF00202 Aminotransferase class-III SMB554_RS27610 PF00171 Aldehyde dehydrogenase family SMB554_RS27615 PF01037 Lrp/AsnC ligand binding domain SMB554_RS27620 PF00155 Aminotransferase class I and II SMB554_RS27620 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS27625 PF00005 ABC transporter SMB554_RS27635 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27640 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27645 PF17645 Arylmalonate decarboxylase SMB554_RS27650 PF00291 Pyridoxal-phosphate dependent enzyme SMB554_RS27655 PF02423 Ornithine cyclodeaminase/mu-crystallin family SMB554_RS27660 PF00557 Metallopeptidase family M24 SMB554_RS27660 PF01321 Creatinase/Prolidase N-terminal domain SMB554_RS27665 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SMB554_RS27670 PF07690 Major Facilitator Superfamily SMB554_RS27675 PF07729 FCD domain SMB554_RS27675 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS27680 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS27690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS27695 PF00107 Zinc-binding dehydrogenase SMB554_RS27695 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS27700 PF03786 D-mannonate dehydratase (UxuA) SMB554_RS27705 PF13188 PAS domain SMB554_RS27705 PF03707 Bacterial signalling protein N terminal repeat SMB554_RS27705 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS27705 PF00563 EAL domain SMB554_RS27715 PF01209 ubiE/COQ5 methyltransferase family SMB554_RS27745 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS27760 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS27765 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS27780 PF11606 Family 31 carbohydrate binding protein SMB554_RS27800 PF05343 M42 glutamyl aminopeptidase SMB554_RS27805 PF07730 Histidine kinase SMB554_RS27805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS27810 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS27810 PF00072 Response regulator receiver domain SMB554_RS27835 PF16861 Carbamoyltransferase C-terminus SMB554_RS27835 PF02543 Carbamoyltransferase N-terminus SMB554_RS27860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS27865 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS27870 PF00005 ABC transporter SMB554_RS27870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS27875 PF00005 ABC transporter SMB554_RS27875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS27880 PF07702 UTRA domain SMB554_RS27880 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS27885 PF00733 Asparagine synthase SMB554_RS27885 PF13537 Glutamine amidotransferase domain SMB554_RS27895 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS27905 PF00005 ABC transporter SMB554_RS27910 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS27915 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS27920 PF01261 Xylose isomerase-like TIM barrel SMB554_RS27930 PF00596 Class II Aldolase and Adducin N-terminal domain SMB554_RS27955 PF03466 LysR substrate binding domain SMB554_RS27955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS27970 PF05199 GMC oxidoreductase SMB554_RS27970 PF00732 GMC oxidoreductase SMB554_RS27975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS27975 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS27980 PF01791 DeoC/LacD family aldolase SMB554_RS27985 PF01266 FAD dependent oxidoreductase SMB554_RS27985 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SMB554_RS27990 PF00248 Aldo/keto reductase family SMB554_RS27995 PF04198 Putative sugar-binding domain SMB554_RS27995 PF13936 Helix-turn-helix domain SMB554_RS28000 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS28005 PF00005 ABC transporter SMB554_RS28020 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS28025 PF00005 ABC transporter SMB554_RS28030 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SMB554_RS28035 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS28035 PF07729 FCD domain SMB554_RS28040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS28040 PF13378 Enolase C-terminal domain-like SMB554_RS28050 PF00067 Cytochrome P450 SMB554_RS28060 PF00106 short chain dehydrogenase SMB554_RS28090 PF01339 CheB methylesterase SMB554_RS28090 PF00072 Response regulator receiver domain SMB554_RS28095 PF03705 CheR methyltransferase, all-alpha domain SMB554_RS28095 PF01739 CheR methyltransferase, SAM binding domain SMB554_RS28095 PF01339 CheB methylesterase SMB554_RS28095 PF08448 PAS fold SMB554_RS28110 PF00182 Chitinase class I SMB554_RS28160 PF00990 Diguanylate cyclase, GGDEF domain SMB554_RS28160 PF08448 PAS fold SMB554_RS28170 PF17932 Tetracyclin repressor-like, C-terminal domain SMB554_RS28170 PF00440 Bacterial regulatory proteins, tetR family SMB554_RS28190 PF05114 Protein of unknown function (DUF692) SMB554_RS28200 PF04545 Sigma-70, region 4 SMB554_RS28200 PF04542 Sigma-70 region 2 SMB554_RS28225 PF01842 ACT domain SMB554_RS28225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SMB554_RS28225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SMB554_RS28235 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS28240 PF13416 Bacterial extracellular solute-binding protein SMB554_RS28250 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS28380 PF04138 GtrA-like protein SMB554_RS28385 PF00535 Glycosyl transferase family 2 SMB554_RS28390 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS28395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMB554_RS28400 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS28405 PF00483 Nucleotidyl transferase SMB554_RS28425 PF01695 IstB-like ATP binding protein SMB554_RS28430 PF00665 Integrase core domain SMB554_RS28445 PF00872 Transposase, Mutator family SMB554_RS28460 PF01348 Type II intron maturase SMB554_RS28460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS28480 PF13439 Glycosyltransferase Family 4 SMB554_RS28480 PF00534 Glycosyl transferases group 1 SMB554_RS28485 PF00072 Response regulator receiver domain SMB554_RS28485 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS28525 PF00872 Transposase, Mutator family SMB554_RS28530 PF04304 Protein of unknown function (DUF454) SMB554_RS28590 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase SMB554_RS28600 PF00571 CBS domain SMB554_RS28600 PF01380 SIS domain SMB554_RS28605 PF01757 Acyltransferase family SMB554_RS28620 PF00664 ABC transporter transmembrane region SMB554_RS28620 PF00005 ABC transporter SMB554_RS28635 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS28645 PF00355 Rieske [2Fe-2S] domain SMB554_RS28650 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS28650 PF14759 Reductase C-terminal SMB554_RS28655 PF02548 Ketopantoate hydroxymethyltransferase SMB554_RS28660 PF00413 Matrixin SMB554_RS28660 PF08548 Peptidase M10 serralysin C terminal SMB554_RS28660 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SMB554_RS28670 PF05159 Capsule polysaccharide biosynthesis protein SMB554_RS28695 PF00534 Glycosyl transferases group 1 SMB554_RS28700 PF00535 Glycosyl transferase family 2 SMB554_RS28710 PF00005 ABC transporter SMB554_RS28715 PF01061 ABC-2 type transporter SMB554_RS28720 PF05159 Capsule polysaccharide biosynthesis protein SMB554_RS28730 PF00596 Class II Aldolase and Adducin N-terminal domain SMB554_RS28735 PF13407 Periplasmic binding protein domain SMB554_RS28740 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS28745 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS28750 PF00005 ABC transporter SMB554_RS28755 PF04198 Putative sugar-binding domain SMB554_RS28765 PF03992 Antibiotic biosynthesis monooxygenase SMB554_RS28850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS28855 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS28860 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS28860 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS28865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS28865 PF00005 ABC transporter SMB554_RS28870 PF09587 Bacterial capsule synthesis protein PGA_cap SMB554_RS28875 PF01546 Peptidase family M20/M25/M40 SMB554_RS28875 PF07687 Peptidase dimerisation domain SMB554_RS28880 PF01068 ATP dependent DNA ligase domain SMB554_RS28880 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS28880 PF13298 DNA polymerase Ligase (LigD) SMB554_RS28915 PF00565 Staphylococcal nuclease homologue SMB554_RS28965 PF00550 Phosphopantetheine attachment site SMB554_RS28980 PF03389 MobA/MobL family SMB554_RS28980 PF17841 BID domain of Bartonella effector protein (Bep) SMB554_RS28980 PF01443 Viral (Superfamily 1) RNA helicase SMB554_RS28990 PF02515 CoA-transferase family III SMB554_RS29000 PF01183 Glycosyl hydrolases family 25 SMB554_RS29015 PF14698 Argininosuccinate lyase C-terminal SMB554_RS29015 PF00206 Lyase SMB554_RS29020 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29025 PF00005 ABC transporter SMB554_RS29035 PF03972 MmgE/PrpD family SMB554_RS29055 PF01614 Bacterial transcriptional regulator SMB554_RS29055 PF09339 IclR helix-turn-helix domain SMB554_RS29065 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29070 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29075 PF17912 MalK OB fold domain SMB554_RS29075 PF00005 ABC transporter SMB554_RS29080 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS29080 PF13378 Enolase C-terminal domain-like SMB554_RS29085 PF05336 L-rhamnose mutarotase SMB554_RS29105 PF01557 Fumarylacetoacetate (FAA) hydrolase family SMB554_RS29110 PF13378 Enolase C-terminal domain-like SMB554_RS29110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SMB554_RS29120 PF03861 ANTAR domain SMB554_RS29120 PF08376 Nitrate and nitrite sensing SMB554_RS29130 PF01381 Helix-turn-helix SMB554_RS29145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS29145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS29145 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS29150 PF01039 Carboxyl transferase domain SMB554_RS29160 PF02785 Biotin carboxylase C-terminal domain SMB554_RS29160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS29160 PF00289 Biotin carboxylase, N-terminal domain SMB554_RS29160 PF00364 Biotin-requiring enzyme SMB554_RS29165 PF00682 HMGL-like SMB554_RS29180 PF08808 RES domain SMB554_RS29185 PF01565 FAD binding domain SMB554_RS29185 PF02913 FAD linked oxidases, C-terminal domain SMB554_RS29190 PF00005 ABC transporter SMB554_RS29190 PF12857 TOBE-like domain SMB554_RS29195 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29200 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29210 PF14031 Putative serine dehydratase domain SMB554_RS29215 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS29220 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29225 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29230 PF00005 ABC transporter SMB554_RS29235 PF01042 Endoribonuclease L-PSP SMB554_RS29245 PF00005 ABC transporter SMB554_RS29245 PF17912 MalK OB fold domain SMB554_RS29245 PF03459 TOBE domain SMB554_RS29250 PF00294 pfkB family carbohydrate kinase SMB554_RS29260 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29265 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29270 PF01547 Bacterial extracellular solute-binding protein SMB554_RS29275 PF00480 ROK family SMB554_RS29280 PF01507 Phosphoadenosine phosphosulfate reductase family SMB554_RS29285 PF00009 Elongation factor Tu GTP binding domain SMB554_RS29290 PF00459 Inositol monophosphatase family SMB554_RS29300 PF01820 D-ala D-ala ligase N-terminus SMB554_RS29300 PF07478 D-ala D-ala ligase C-terminus SMB554_RS29305 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS29325 PF00534 Glycosyl transferases group 1 SMB554_RS29335 PF02719 Polysaccharide biosynthesis protein SMB554_RS29340 PF00551 Formyl transferase SMB554_RS29340 PF02911 Formyl transferase, C-terminal domain SMB554_RS29370 PF00534 Glycosyl transferases group 1 SMB554_RS29370 PF13439 Glycosyltransferase Family 4 SMB554_RS29385 PF02563 Polysaccharide biosynthesis/export protein SMB554_RS29390 PF02397 Bacterial sugar transferase SMB554_RS29400 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SMB554_RS29410 PF13439 Glycosyltransferase Family 4 SMB554_RS29410 PF00534 Glycosyl transferases group 1 SMB554_RS29415 PF00924 Mechanosensitive ion channel SMB554_RS29420 PF13439 Glycosyltransferase Family 4 SMB554_RS29420 PF00534 Glycosyl transferases group 1 SMB554_RS29430 PF12706 Beta-lactamase superfamily domain SMB554_RS29430 PF00753 Metallo-beta-lactamase superfamily SMB554_RS29440 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SMB554_RS29440 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SMB554_RS29440 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SMB554_RS29455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS29455 PF00005 ABC transporter SMB554_RS29460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS29465 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29470 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29470 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS29480 PF00534 Glycosyl transferases group 1 SMB554_RS29480 PF13439 Glycosyltransferase Family 4 SMB554_RS29495 PF00664 ABC transporter transmembrane region SMB554_RS29495 PF00005 ABC transporter SMB554_RS29500 PF13302 Acetyltransferase (GNAT) domain SMB554_RS29500 PF00027 Cyclic nucleotide-binding domain SMB554_RS29510 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS29520 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29525 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29530 PF00005 ABC transporter SMB554_RS29530 PF08402 TOBE domain SMB554_RS29540 PF13382 Adenine deaminase C-terminal domain SMB554_RS29540 PF01979 Amidohydrolase family SMB554_RS29545 PF01546 Peptidase family M20/M25/M40 SMB554_RS29545 PF07687 Peptidase dimerisation domain SMB554_RS29550 PF00156 Phosphoribosyl transferase domain SMB554_RS29555 PF00860 Permease family SMB554_RS29565 PF03561 Allantoicase repeat SMB554_RS29570 PF09349 OHCU decarboxylase SMB554_RS29570 PF01014 Uricase SMB554_RS29575 PF00576 HIUase/Transthyretin family SMB554_RS29580 PF01799 [2Fe-2S] binding domain SMB554_RS29580 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS29585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS29585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS29595 PF01638 HxlR-like helix-turn-helix SMB554_RS29600 PF00107 Zinc-binding dehydrogenase SMB554_RS29600 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS29605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS29605 PF03466 LysR substrate binding domain SMB554_RS29615 PF01979 Amidohydrolase family SMB554_RS29620 PF00011 Hsp20/alpha crystallin family SMB554_RS29625 PF00011 Hsp20/alpha crystallin family SMB554_RS29635 PF06832 Penicillin-Binding Protein C-terminus Family SMB554_RS29635 PF00905 Penicillin binding protein transpeptidase domain SMB554_RS29635 PF00912 Transglycosylase SMB554_RS29640 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SMB554_RS29640 PF01835 MG2 domain SMB554_RS29640 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SMB554_RS29640 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SMB554_RS29640 PF07703 Alpha-2-macroglobulin bait region domain SMB554_RS29640 PF00207 Alpha-2-macroglobulin family SMB554_RS29640 PF17962 Bacterial macroglobulin domain 6 SMB554_RS29640 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SMB554_RS29645 PF00455 DeoR C terminal sensor domain SMB554_RS29645 PF08220 DeoR-like helix-turn-helix domain SMB554_RS29650 PF01791 DeoC/LacD family aldolase SMB554_RS29655 PF00171 Aldehyde dehydrogenase family SMB554_RS29675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SMB554_RS29675 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS29680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMB554_RS29685 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29690 PF00005 ABC transporter SMB554_RS29695 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS29700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS29705 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29710 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29715 PF01547 Bacterial extracellular solute-binding protein SMB554_RS29720 PF00005 ABC transporter SMB554_RS29720 PF17912 MalK OB fold domain SMB554_RS29735 PF07364 Metallopeptidase family M81 SMB554_RS29735 PF07171 MlrC C-terminus SMB554_RS29745 PF01042 Endoribonuclease L-PSP SMB554_RS29750 PF01418 Helix-turn-helix domain, rpiR family SMB554_RS29750 PF01380 SIS domain SMB554_RS29760 PF00728 Glycosyl hydrolase family 20, catalytic domain SMB554_RS29760 PF02838 Glycosyl hydrolase family 20, domain 2 SMB554_RS29775 PF01175 Urocanase Rossmann-like domain SMB554_RS29775 PF17392 Urocanase C-terminal domain SMB554_RS29775 PF17391 Urocanase N-terminal domain SMB554_RS29785 PF00221 Aromatic amino acid lyase SMB554_RS29790 PF01979 Amidohydrolase family SMB554_RS29805 PF07690 Major Facilitator Superfamily SMB554_RS29810 PF01022 Bacterial regulatory protein, arsR family SMB554_RS29815 PF00625 Guanylate kinase SMB554_RS29820 PF07969 Amidohydrolase family SMB554_RS29825 PF06299 Protein of unknown function (DUF1045) SMB554_RS29835 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29840 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29845 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS29845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS29850 PF00005 ABC transporter SMB554_RS29860 PF01266 FAD dependent oxidoreductase SMB554_RS29865 PF03466 LysR substrate binding domain SMB554_RS29865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS29870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS29870 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS29870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS29875 PF02515 CoA-transferase family III SMB554_RS29880 PF00183 Hsp90 protein SMB554_RS29885 PF00871 Acetokinase family SMB554_RS29890 PF00171 Aldehyde dehydrogenase family SMB554_RS29895 PF00202 Aminotransferase class-III SMB554_RS29905 PF01757 Acyltransferase family SMB554_RS29910 PF00535 Glycosyl transferase family 2 SMB554_RS29920 PF00005 ABC transporter SMB554_RS29920 PF00664 ABC transporter transmembrane region SMB554_RS29925 PF01116 Fructose-bisphosphate aldolase class-II SMB554_RS29930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS29935 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29940 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS29940 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS29945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS29945 PF00005 ABC transporter SMB554_RS29950 PF02954 Bacterial regulatory protein, Fis family SMB554_RS29950 PF00072 Response regulator receiver domain SMB554_RS29950 PF00158 Sigma-54 interaction domain SMB554_RS29955 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS29955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS29955 PF02743 Cache domain SMB554_RS29960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMB554_RS29985 PF00005 ABC transporter SMB554_RS29990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS30000 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS30000 PF07689 KaiB domain SMB554_RS30000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS30005 PF00072 Response regulator receiver domain SMB554_RS30005 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS30010 PF08019 Phosphoethanolamine transferase EptA/EptB SMB554_RS30010 PF00884 Sulfatase SMB554_RS30025 PF00149 Calcineurin-like phosphoesterase SMB554_RS30030 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS30060 PF13439 Glycosyltransferase Family 4 SMB554_RS30060 PF00534 Glycosyl transferases group 1 SMB554_RS30065 PF08241 Methyltransferase domain SMB554_RS30070 PF00534 Glycosyl transferases group 1 SMB554_RS30070 PF00535 Glycosyl transferase family 2 SMB554_RS30080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS30080 PF00529 HlyD membrane-fusion protein of T1SS SMB554_RS30085 PF00005 ABC transporter SMB554_RS30085 PF00664 ABC transporter transmembrane region SMB554_RS30090 PF12802 MarR family SMB554_RS30095 PF00534 Glycosyl transferases group 1 SMB554_RS30095 PF13439 Glycosyltransferase Family 4 SMB554_RS30125 PF00483 Nucleotidyl transferase SMB554_RS30130 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SMB554_RS30135 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS30140 PF04321 RmlD substrate binding domain SMB554_RS30155 PF05532 CsbD-like SMB554_RS30180 PF01594 AI-2E family transporter SMB554_RS30190 PF01799 [2Fe-2S] binding domain SMB554_RS30190 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS30195 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS30195 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS30200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS30200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS30210 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS30215 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS30220 PF00005 ABC transporter SMB554_RS30225 PF13407 Periplasmic binding protein domain SMB554_RS30230 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS30245 PF04962 KduI/IolB family SMB554_RS30250 PF07729 FCD domain SMB554_RS30250 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS30255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS30265 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS30270 PF02614 Glucuronate isomerase SMB554_RS30275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS30275 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS30280 PF03631 Virulence factor BrkB SMB554_RS30295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS30295 PF03466 LysR substrate binding domain SMB554_RS30310 PF04239 Protein of unknown function (DUF421) SMB554_RS30320 PF03631 Virulence factor BrkB SMB554_RS30325 PF07995 Glucose / Sorbosone dehydrogenase SMB554_RS30350 PF00034 Cytochrome c SMB554_RS30350 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMB554_RS30350 PF02790 Cytochrome C oxidase subunit II, transmembrane domain SMB554_RS30360 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS30370 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS30375 PF08013 Tagatose 6 phosphate kinase SMB554_RS30380 PF00294 pfkB family carbohydrate kinase SMB554_RS30385 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS30390 PF00005 ABC transporter SMB554_RS30395 PF13407 Periplasmic binding protein domain SMB554_RS30410 PF00775 Dioxygenase SMB554_RS30410 PF04444 Catechol dioxygenase N terminus SMB554_RS30430 PF00106 short chain dehydrogenase SMB554_RS30435 PF06719 AraC-type transcriptional regulator N-terminus SMB554_RS30435 PF12833 Helix-turn-helix domain SMB554_RS30440 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS30440 PF00155 Aminotransferase class I and II SMB554_RS30445 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SMB554_RS30450 PF00005 ABC transporter SMB554_RS30455 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS30470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS30470 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS30470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS30475 PF03601 Conserved hypothetical protein 698 SMB554_RS30480 PF01515 Phosphate acetyl/butaryl transferase SMB554_RS30485 PF00455 DeoR C terminal sensor domain SMB554_RS30485 PF08220 DeoR-like helix-turn-helix domain SMB554_RS30490 PF08669 Glycine cleavage T-protein C-terminal barrel domain SMB554_RS30490 PF01571 Aminomethyltransferase folate-binding domain SMB554_RS30490 PF01266 FAD dependent oxidoreductase SMB554_RS30490 PF16350 FAD dependent oxidoreductase central domain SMB554_RS30495 PF03466 LysR substrate binding domain SMB554_RS30495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS30500 PF02690 Na+/Pi-cotransporter SMB554_RS30505 PF00266 Aminotransferase class-V SMB554_RS30510 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase SMB554_RS30515 PF00171 Aldehyde dehydrogenase family SMB554_RS30530 PF00005 ABC transporter SMB554_RS30535 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS30550 PF00072 Response regulator receiver domain SMB554_RS30550 PF04397 LytTr DNA-binding domain SMB554_RS30555 PF06580 Histidine kinase SMB554_RS30555 PF07694 5TMR of 5TMR-LYT SMB554_RS30570 PF00581 Rhodanese-like domain SMB554_RS30605 PF02254 TrkA-N domain SMB554_RS30605 PF00999 Sodium/hydrogen exchanger family SMB554_RS30610 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS30610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS30615 PF00941 FAD binding domain in molybdopterin dehydrogenase SMB554_RS30615 PF03450 CO dehydrogenase flavoprotein C-terminal domain SMB554_RS30620 PF01799 [2Fe-2S] binding domain SMB554_RS30620 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS30625 PF12833 Helix-turn-helix domain SMB554_RS30625 PF02311 AraC-like ligand binding domain SMB554_RS30630 PF00672 HAMP domain SMB554_RS30630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS30630 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS30635 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS30635 PF00072 Response regulator receiver domain SMB554_RS30660 PF00118 TCP-1/cpn60 chaperonin family SMB554_RS30665 PF00166 Chaperonin 10 Kd subunit SMB554_RS30670 PF06233 Usg-like family SMB554_RS30680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SMB554_RS30700 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS30700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS30730 PF00403 Heavy-metal-associated domain SMB554_RS30735 PF00376 MerR family regulatory protein SMB554_RS30735 PF09278 MerR, DNA binding SMB554_RS30740 PF09335 SNARE associated Golgi protein SMB554_RS30745 PF13439 Glycosyltransferase Family 4 SMB554_RS30745 PF00534 Glycosyl transferases group 1 SMB554_RS30770 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SMB554_RS30770 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SMB554_RS30775 PF13407 Periplasmic binding protein domain SMB554_RS30780 PF00005 ABC transporter SMB554_RS30785 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS30790 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS30795 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS30795 PF07729 FCD domain SMB554_RS30800 PF00005 ABC transporter SMB554_RS30800 PF17912 MalK OB fold domain SMB554_RS30805 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS30810 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS30815 PF13416 Bacterial extracellular solute-binding protein SMB554_RS30825 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS30825 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS30830 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS30840 PF00144 Beta-lactamase SMB554_RS30850 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS30855 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS30860 PF13416 Bacterial extracellular solute-binding protein SMB554_RS30865 PF00005 ABC transporter SMB554_RS30865 PF17912 MalK OB fold domain SMB554_RS30870 PF06964 Alpha-L-arabinofuranosidase C-terminal domain SMB554_RS30880 PF02163 Peptidase family M50 SMB554_RS30880 PF17820 PDZ domain SMB554_RS30890 PF01471 Putative peptidoglycan binding domain SMB554_RS30890 PF03572 Peptidase family S41 SMB554_RS30890 PF17820 PDZ domain SMB554_RS30895 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS30900 PF00005 ABC transporter SMB554_RS30910 PF00722 Glycosyl hydrolases family 16 SMB554_RS30910 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SMB554_RS30915 PF08447 PAS fold SMB554_RS30915 PF13426 PAS domain SMB554_RS30915 PF07536 HWE histidine kinase SMB554_RS30920 PF00072 Response regulator receiver domain SMB554_RS30940 PF06472 ABC transporter transmembrane region 2 SMB554_RS30940 PF00005 ABC transporter SMB554_RS30945 PF04055 Radical SAM superfamily SMB554_RS30950 PF01242 6-pyruvoyl tetrahydropterin synthase SMB554_RS30955 PF06508 Queuosine biosynthesis protein QueC SMB554_RS30960 PF00664 ABC transporter transmembrane region SMB554_RS30960 PF00005 ABC transporter SMB554_RS30965 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS30970 PF01757 Acyltransferase family SMB554_RS30980 PF02563 Polysaccharide biosynthesis/export protein SMB554_RS30985 PF02397 Bacterial sugar transferase SMB554_RS30990 PF11089 Exopolysaccharide production repressor SMB554_RS30995 PF00535 Glycosyl transferase family 2 SMB554_RS31000 PF04230 Polysaccharide pyruvyl transferase SMB554_RS31005 PF00535 Glycosyl transferase family 2 SMB554_RS31010 PF01943 Polysaccharide biosynthesis protein SMB554_RS31020 PF00565 Staphylococcal nuclease homologue SMB554_RS31035 PF01757 Acyltransferase family SMB554_RS31040 PF00722 Glycosyl hydrolases family 16 SMB554_RS31050 PF00535 Glycosyl transferase family 2 SMB554_RS31055 PF00535 Glycosyl transferase family 2 SMB554_RS31060 PF00535 Glycosyl transferase family 2 SMB554_RS31065 PF00483 Nucleotidyl transferase SMB554_RS31070 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMB554_RS31070 PF02706 Chain length determinant protein SMB554_RS31070 PF13807 G-rich domain on putative tyrosine kinase SMB554_RS31080 PF08543 Phosphomethylpyrimidine kinase SMB554_RS31095 PF10417 C-terminal domain of 1-Cys peroxiredoxin SMB554_RS31095 PF00578 AhpC/TSA family SMB554_RS31105 PF08532 Beta-galactosidase trimerisation domain SMB554_RS31105 PF02449 Beta-galactosidase SMB554_RS31105 PF08533 Beta-galactosidase C-terminal domain SMB554_RS31110 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS31120 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS31125 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS31130 PF01547 Bacterial extracellular solute-binding protein SMB554_RS31135 PF00005 ABC transporter SMB554_RS31135 PF17912 MalK OB fold domain SMB554_RS31140 PF00202 Aminotransferase class-III SMB554_RS31145 PF00106 short chain dehydrogenase SMB554_RS31150 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS31155 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS31160 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS31170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS31180 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS31180 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS31195 PF18267 Rubredoxin NAD+ reductase C-terminal domain SMB554_RS31195 PF04324 BFD-like [2Fe-2S] binding domain SMB554_RS31195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SMB554_RS31195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SMB554_RS31195 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS31205 PF00384 Molybdopterin oxidoreductase SMB554_RS31205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SMB554_RS31205 PF04324 BFD-like [2Fe-2S] binding domain SMB554_RS31205 PF01568 Molydopterin dinucleotide binding domain SMB554_RS31210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SMB554_RS31210 PF14824 Sirohaem biosynthesis protein central SMB554_RS31210 PF10414 Sirohaem synthase dimerisation region SMB554_RS31215 PF00293 NUDIX domain SMB554_RS31225 PF01145 SPFH domain / Band 7 family SMB554_RS31225 PF16200 C-terminal region of band_7 SMB554_RS31250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS31250 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS31250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS31255 PF00872 Transposase, Mutator family SMB554_RS31260 PF02082 Transcriptional regulator SMB554_RS31265 PF01926 50S ribosome-binding GTPase SMB554_RS31265 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SMB554_RS31285 PF05992 SbmA/BacA-like family SMB554_RS31290 PF06779 Uncharacterised MFS-type transporter YbfB SMB554_RS31300 PF00557 Metallopeptidase family M24 SMB554_RS31335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS31335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS31345 PF01799 [2Fe-2S] binding domain SMB554_RS31345 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS31355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SMB554_RS31355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SMB554_RS31365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS31365 PF03466 LysR substrate binding domain SMB554_RS31375 PF01979 Amidohydrolase family SMB554_RS31380 PF01070 FMN-dependent dehydrogenase SMB554_RS31385 PF04198 Putative sugar-binding domain SMB554_RS31390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SMB554_RS31390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SMB554_RS31395 PF08240 Alcohol dehydrogenase GroES-like domain SMB554_RS31395 PF00107 Zinc-binding dehydrogenase SMB554_RS31400 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS31405 PF00005 ABC transporter SMB554_RS31410 PF13407 Periplasmic binding protein domain SMB554_RS31415 PF06560 Glucose-6-phosphate isomerase (GPI) SMB554_RS31420 PF12833 Helix-turn-helix domain SMB554_RS31420 PF12852 Cupin SMB554_RS31430 PF00561 alpha/beta hydrolase fold SMB554_RS31435 PF07992 Pyridine nucleotide-disulphide oxidoreductase SMB554_RS31460 PF00753 Metallo-beta-lactamase superfamily SMB554_RS31460 PF16123 Hydroxyacylglutathione hydrolase C-terminus SMB554_RS31470 PF13493 Domain of unknown function (DUF4118) SMB554_RS31470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS31470 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS31470 PF00989 PAS fold SMB554_RS31470 PF08447 PAS fold SMB554_RS31470 PF13426 PAS domain SMB554_RS31475 PF00072 Response regulator receiver domain SMB554_RS31475 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS31480 PF00072 Response regulator receiver domain SMB554_RS31480 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS31485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS31485 PF03466 LysR substrate binding domain SMB554_RS31495 PF00576 HIUase/Transthyretin family SMB554_RS31500 PF04115 Ureidoglycolate lyase SMB554_RS31505 PF01014 Uricase SMB554_RS31505 PF09349 OHCU decarboxylase SMB554_RS31520 PF01266 FAD dependent oxidoreductase SMB554_RS31525 PF01266 FAD dependent oxidoreductase SMB554_RS31525 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SMB554_RS31535 PF00270 DEAD/DEAH box helicase SMB554_RS31535 PF00271 Helicase conserved C-terminal domain SMB554_RS31545 PF00873 AcrB/AcrD/AcrF family SMB554_RS31575 PF14403 Circularly permuted ATP-grasp type 2 SMB554_RS31585 PF01841 Transglutaminase-like superfamily SMB554_RS31585 PF08379 Bacterial transglutaminase-like N-terminal region SMB554_RS31595 PF00920 Dehydratase family SMB554_RS31600 PF00171 Aldehyde dehydrogenase family SMB554_RS31610 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS31615 PF00005 ABC transporter SMB554_RS31620 PF13407 Periplasmic binding protein domain SMB554_RS31645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SMB554_RS31645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SMB554_RS31665 PF13407 Periplasmic binding protein domain SMB554_RS31670 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS31675 PF00005 ABC transporter SMB554_RS31690 PF02371 Transposase IS116/IS110/IS902 family SMB554_RS31690 PF01548 Transposase SMB554_RS31760 PF00857 Isochorismatase family SMB554_RS31765 PF02735 Ku70/Ku80 beta-barrel domain SMB554_RS31770 PF02735 Ku70/Ku80 beta-barrel domain SMB554_RS31785 PF08241 Methyltransferase domain SMB554_RS31795 PF04343 Protein of unknown function, DUF488 SMB554_RS31800 PF13202 EF hand SMB554_RS31800 PF00923 Transaldolase/Fructose-6-phosphate aldolase SMB554_RS31810 PF01565 FAD binding domain SMB554_RS31810 PF08031 Berberine and berberine like SMB554_RS31820 PF16363 GDP-mannose 4,6 dehydratase SMB554_RS31825 PF08421 Putative zinc binding domain SMB554_RS31825 PF08484 C-methyltransferase C-terminal domain SMB554_RS31850 PF00005 ABC transporter SMB554_RS31855 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS31860 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain SMB554_RS31860 PF02129 X-Pro dipeptidyl-peptidase (S15 family) SMB554_RS31875 PF00132 Bacterial transferase hexapeptide (six repeats) SMB554_RS31875 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal SMB554_RS31875 PF14602 Hexapeptide repeat of succinyl-transferase SMB554_RS31880 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SMB554_RS31885 PF00005 ABC transporter SMB554_RS31890 PF01032 FecCD transport family SMB554_RS31900 PF01209 ubiE/COQ5 methyltransferase family SMB554_RS31910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS31910 PF03466 LysR substrate binding domain SMB554_RS31915 PF07687 Peptidase dimerisation domain SMB554_RS31915 PF01546 Peptidase family M20/M25/M40 SMB554_RS31920 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SMB554_RS31925 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SMB554_RS31930 PF03480 Bacterial extracellular solute-binding protein, family 7 SMB554_RS31950 PF00571 CBS domain SMB554_RS31980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMB554_RS31980 PF00128 Alpha amylase, catalytic domain SMB554_RS31985 PF11941 Domain of unknown function (DUF3459) SMB554_RS31985 PF00128 Alpha amylase, catalytic domain SMB554_RS31985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SMB554_RS31990 PF03167 Uracil DNA glycosylase superfamily SMB554_RS32035 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS32040 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS32045 PF00005 ABC transporter SMB554_RS32045 PF08402 TOBE domain SMB554_RS32050 PF01547 Bacterial extracellular solute-binding protein SMB554_RS32055 PF01467 Cytidylyltransferase-like SMB554_RS32055 PF00294 pfkB family carbohydrate kinase SMB554_RS32060 PF11975 Family 4 glycosyl hydrolase C-terminal domain SMB554_RS32060 PF02056 Family 4 glycosyl hydrolase SMB554_RS32065 PF07702 UTRA domain SMB554_RS32065 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS32070 PF00529 HlyD membrane-fusion protein of T1SS SMB554_RS32070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS32075 PF00005 ABC transporter SMB554_RS32075 PF00664 ABC transporter transmembrane region SMB554_RS32115 PF00106 short chain dehydrogenase SMB554_RS32135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS32155 PF00571 CBS domain SMB554_RS32180 PF04542 Sigma-70 region 2 SMB554_RS32180 PF08281 Sigma-70, region 4 SMB554_RS32195 PF00083 Sugar (and other) transporter SMB554_RS32195 PF07690 Major Facilitator Superfamily SMB554_RS32200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SMB554_RS32200 PF06481 COX Aromatic Rich Motif SMB554_RS32205 PF00115 Cytochrome C and Quinol oxidase polypeptide I SMB554_RS32210 PF00510 Cytochrome c oxidase subunit III SMB554_RS32215 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SMB554_RS32220 PF02104 SURF1 family SMB554_RS32240 PF02423 Ornithine cyclodeaminase/mu-crystallin family SMB554_RS32255 PF08548 Peptidase M10 serralysin C terminal SMB554_RS32255 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) SMB554_RS32260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SMB554_RS32265 PF00873 AcrB/AcrD/AcrF family SMB554_RS32285 PF13439 Glycosyltransferase Family 4 SMB554_RS32290 PF00665 Integrase core domain SMB554_RS32295 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SMB554_RS32310 PF13439 Glycosyltransferase Family 4 SMB554_RS32310 PF00534 Glycosyl transferases group 1 SMB554_RS32330 PF00701 Dihydrodipicolinate synthetase family SMB554_RS32350 PF05175 Methyltransferase small domain SMB554_RS32360 PF01476 LysM domain SMB554_RS32360 PF17969 L,D-transpeptidase C-terminal domain SMB554_RS32360 PF03734 L,D-transpeptidase catalytic domain SMB554_RS32365 PF00563 EAL domain SMB554_RS32375 PF00672 HAMP domain SMB554_RS32375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS32375 PF07730 Histidine kinase SMB554_RS32380 PF00196 Bacterial regulatory proteins, luxR family SMB554_RS32380 PF00072 Response regulator receiver domain SMB554_RS32390 PF03776 Septum formation topological specificity factor MinE SMB554_RS32395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SMB554_RS32400 PF03775 Septum formation inhibitor MinC, C-terminal domain SMB554_RS32410 PF00248 Aldo/keto reductase family SMB554_RS32420 PF02540 NAD synthase SMB554_RS32425 PF13193 AMP-binding enzyme C-terminal domain SMB554_RS32425 PF00501 AMP-binding enzyme SMB554_RS32435 PF00733 Asparagine synthase SMB554_RS32435 PF13537 Glutamine amidotransferase domain SMB554_RS32460 PF00248 Aldo/keto reductase family SMB554_RS32470 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS32475 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS32485 PF00005 ABC transporter SMB554_RS32485 PF03459 TOBE domain SMB554_RS32485 PF17912 MalK OB fold domain SMB554_RS32495 PF01370 NAD dependent epimerase/dehydratase family SMB554_RS32505 PF00596 Class II Aldolase and Adducin N-terminal domain SMB554_RS32510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SMB554_RS32510 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS32515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS32515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS32520 PF01261 Xylose isomerase-like TIM barrel SMB554_RS32525 PF07005 Sugar-binding N-terminal domain SMB554_RS32525 PF17042 Nucleotide-binding C-terminal domain SMB554_RS32535 PF01348 Type II intron maturase SMB554_RS32535 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SMB554_RS32555 PF13407 Periplasmic binding protein domain SMB554_RS32560 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS32565 PF00005 ABC transporter SMB554_RS32570 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS32585 PF04115 Ureidoglycolate lyase SMB554_RS32590 PF05161 MOFRL family SMB554_RS32590 PF13660 Domain of unknown function (DUF4147) SMB554_RS32595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS32595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS32600 PF01261 Xylose isomerase-like TIM barrel SMB554_RS32605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SMB554_RS32605 PF00205 Thiamine pyrophosphate enzyme, central domain SMB554_RS32605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SMB554_RS32610 PF09339 IclR helix-turn-helix domain SMB554_RS32610 PF01614 Bacterial transcriptional regulator SMB554_RS32615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS32615 PF03466 LysR substrate binding domain SMB554_RS32620 PF07883 Cupin domain SMB554_RS32620 PF05899 Protein of unknown function (DUF861) SMB554_RS32625 PF01068 ATP dependent DNA ligase domain SMB554_RS32625 PF13298 DNA polymerase Ligase (LigD) SMB554_RS32625 PF04679 ATP dependent DNA ligase C terminal region SMB554_RS32630 PF02735 Ku70/Ku80 beta-barrel domain SMB554_RS32670 PF00732 GMC oxidoreductase SMB554_RS32670 PF05199 GMC oxidoreductase SMB554_RS32685 PF01546 Peptidase family M20/M25/M40 SMB554_RS32695 PF13533 Biotin-lipoyl like SMB554_RS32710 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS32715 PF01161 Phosphatidylethanolamine-binding protein SMB554_RS32720 PF00534 Glycosyl transferases group 1 SMB554_RS32720 PF08323 Starch synthase catalytic domain SMB554_RS32730 PF00497 Bacterial extracellular solute-binding proteins, family 3 SMB554_RS32735 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS32740 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SMB554_RS32740 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SMB554_RS32745 PF02245 Methylpurine-DNA glycosylase (MPG) SMB554_RS32750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS32750 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS32760 PF13407 Periplasmic binding protein domain SMB554_RS32765 PF00005 ABC transporter SMB554_RS32770 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS32775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS32775 PF03466 LysR substrate binding domain SMB554_RS32785 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS32790 PF00005 ABC transporter SMB554_RS32795 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS32800 PF13407 Periplasmic binding protein domain SMB554_RS32805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS32805 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS32810 PF00072 Response regulator receiver domain SMB554_RS32810 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS32820 PF03401 Tripartite tricarboxylate transporter family receptor SMB554_RS32830 PF01970 Tripartite tricarboxylate transporter TctA family SMB554_RS32855 PF03951 Glutamine synthetase, beta-Grasp domain SMB554_RS32855 PF00120 Glutamine synthetase, catalytic domain SMB554_RS32860 PF10931 Protein of unknown function (DUF2735) SMB554_RS32865 PF13419 Haloacid dehalogenase-like hydrolase SMB554_RS32870 PF00535 Glycosyl transferase family 2 SMB554_RS32875 PF01232 Mannitol dehydrogenase Rossmann domain SMB554_RS32875 PF08125 Mannitol dehydrogenase C-terminal domain SMB554_RS32880 PF00106 short chain dehydrogenase SMB554_RS32885 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SMB554_RS32885 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SMB554_RS32890 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS32895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SMB554_RS32895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SMB554_RS32895 PF02770 Acyl-CoA dehydrogenase, middle domain SMB554_RS32900 PF06114 IrrE N-terminal-like domain SMB554_RS32900 PF01381 Helix-turn-helix SMB554_RS32900 PF09856 Predicted transcriptional regulator (DUF2083) SMB554_RS32905 PF01039 Carboxyl transferase domain SMB554_RS32910 PF00364 Biotin-requiring enzyme SMB554_RS32910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SMB554_RS32910 PF18140 Propionyl-coenzyme A carboxylase BT domain SMB554_RS32910 PF00289 Biotin carboxylase, N-terminal domain SMB554_RS32910 PF02785 Biotin carboxylase C-terminal domain SMB554_RS32915 PF02310 B12 binding domain SMB554_RS32915 PF01642 Methylmalonyl-CoA mutase SMB554_RS32920 PF07702 UTRA domain SMB554_RS32920 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS32925 PF06754 Phosphonate metabolism protein PhnG SMB554_RS32930 PF05845 Bacterial phosphonate metabolism protein (PhnH) SMB554_RS32935 PF05861 Bacterial phosphonate metabolism protein (PhnI) SMB554_RS32940 PF06007 Phosphonate metabolism protein PhnJ SMB554_RS32945 PF00005 ABC transporter SMB554_RS32950 PF00005 ABC transporter SMB554_RS32960 PF02733 Dak1 domain SMB554_RS32960 PF02734 DAK2 domain SMB554_RS32970 PF01970 Tripartite tricarboxylate transporter TctA family SMB554_RS32985 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SMB554_RS32990 PF00392 Bacterial regulatory proteins, gntR family SMB554_RS32990 PF07729 FCD domain SMB554_RS33000 PF13181 Tetratricopeptide repeat SMB554_RS33000 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SMB554_RS33005 PF00072 Response regulator receiver domain SMB554_RS33005 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS33010 PF12857 TOBE-like domain SMB554_RS33010 PF00005 ABC transporter SMB554_RS33010 PF17850 CysA C-terminal regulatory domain SMB554_RS33015 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMB554_RS33015 PF00005 ABC transporter SMB554_RS33020 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS33030 PF13458 Periplasmic binding protein SMB554_RS33035 PF00005 ABC transporter SMB554_RS33045 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS33050 PF00296 Luciferase-like monooxygenase SMB554_RS33055 PF03358 NADPH-dependent FMN reductase SMB554_RS33060 PF00128 Alpha amylase, catalytic domain SMB554_RS33065 PF10397 Adenylosuccinate lyase C-terminus SMB554_RS33065 PF00206 Lyase SMB554_RS33070 PF00775 Dioxygenase SMB554_RS33075 PF00775 Dioxygenase SMB554_RS33075 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal SMB554_RS33080 PF02627 Carboxymuconolactone decarboxylase family SMB554_RS33085 PF12697 Alpha/beta hydrolase family SMB554_RS33090 PF03466 LysR substrate binding domain SMB554_RS33090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SMB554_RS33095 PF01261 Xylose isomerase-like TIM barrel SMB554_RS33095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SMB554_RS33105 PF01494 FAD binding domain SMB554_RS33110 PF00174 Oxidoreductase molybdopterin binding domain SMB554_RS33120 PF01614 Bacterial transcriptional regulator SMB554_RS33120 PF09339 IclR helix-turn-helix domain SMB554_RS33125 PF01144 Coenzyme A transferase SMB554_RS33130 PF01144 Coenzyme A transferase SMB554_RS33135 PF00108 Thiolase, N-terminal domain SMB554_RS33135 PF02803 Thiolase, C-terminal domain SMB554_RS33140 PF00708 Acylphosphatase SMB554_RS33145 PF04542 Sigma-70 region 2 SMB554_RS33145 PF08281 Sigma-70, region 4 SMB554_RS33160 PF01580 FtsK/SpoIIIE family SMB554_RS33160 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SMB554_RS33160 PF17854 FtsK alpha domain SMB554_RS33160 PF09397 Ftsk gamma domain SMB554_RS33175 PF13614 AAA domain SMB554_RS33180 PF07506 RepB plasmid partitioning protein SMB554_RS33180 PF02195 ParB-like nuclease domain SMB554_RS33190 PF00005 ABC transporter SMB554_RS33195 PF12399 Branched-chain amino acid ATP-binding cassette transporter SMB554_RS33195 PF00005 ABC transporter SMB554_RS33205 PF02653 Branched-chain amino acid transport system / permease component SMB554_RS33240 PF00211 Adenylate and Guanylate cyclase catalytic domain SMB554_RS33240 PF13191 AAA ATPase domain SMB554_RS33245 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS33245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS33245 PF18415 Histidine kinase receptor ArcB trans-membrane domain SMB554_RS33245 PF01627 Hpt domain SMB554_RS33245 PF00989 PAS fold SMB554_RS33245 PF00072 Response regulator receiver domain SMB554_RS33250 PF00072 Response regulator receiver domain SMB554_RS33250 PF00486 Transcriptional regulatory protein, C terminal SMB554_RS33255 PF00375 Sodium:dicarboxylate symporter family SMB554_RS33260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SMB554_RS33260 PF00512 His Kinase A (phospho-acceptor) domain SMB554_RS33265 PF02954 Bacterial regulatory protein, Fis family SMB554_RS33265 PF00158 Sigma-54 interaction domain SMB554_RS33265 PF00072 Response regulator receiver domain SMB554_RS33275 PF01964 Radical SAM ThiC family SMB554_RS33275 PF13667 ThiC-associated domain SMB554_RS33280 PF01266 FAD dependent oxidoreductase SMB554_RS33290 PF05690 Thiazole biosynthesis protein ThiG SMB554_RS33295 PF02581 Thiamine monophosphate synthase SMB554_RS33300 PF07690 Major Facilitator Superfamily SMB554_RS33305 PF12833 Helix-turn-helix domain SMB554_RS33315 PF01402 Ribbon-helix-helix protein, copG family SMB554_RS33325 PF17912 MalK OB fold domain SMB554_RS33325 PF00005 ABC transporter SMB554_RS33330 PF07944 Beta-L-arabinofuranosidase, GH127 SMB554_RS33335 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS33340 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS33345 PF01547 Bacterial extracellular solute-binding protein SMB554_RS33350 PF00356 Bacterial regulatory proteins, lacI family SMB554_RS33355 PF16653 Saccharopine dehydrogenase C-terminal domain SMB554_RS33355 PF03435 Saccharopine dehydrogenase NADP binding domain SMB554_RS33360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SMB554_RS33365 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS33365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SMB554_RS33365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SMB554_RS33370 PF00378 Enoyl-CoA hydratase/isomerase SMB554_RS33375 PF03061 Thioesterase superfamily SMB554_RS33380 PF00171 Aldehyde dehydrogenase family SMB554_RS33380 PF01575 MaoC like domain SMB554_RS33385 PF00111 2Fe-2S iron-sulfur cluster binding domain SMB554_RS33385 PF00175 Oxidoreductase NAD-binding domain SMB554_RS33385 PF00970 Oxidoreductase FAD-binding domain SMB554_RS33390 PF01883 Iron-sulfur cluster assembly protein SMB554_RS33395 PF05138 Phenylacetic acid catabolic protein SMB554_RS33400 PF06243 Phenylacetic acid degradation B SMB554_RS33405 PF05138 Phenylacetic acid catabolic protein SMB554_RS33420 PF11975 Family 4 glycosyl hydrolase C-terminal domain SMB554_RS33420 PF02056 Family 4 glycosyl hydrolase SMB554_RS33425 PF00005 ABC transporter SMB554_RS33425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SMB554_RS33430 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS33430 PF12911 N-terminal TM domain of oligopeptide transport permease C SMB554_RS33435 PF00528 Binding-protein-dependent transport system inner membrane component SMB554_RS33440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SMB554_RS33445 PF02056 Family 4 glycosyl hydrolase SMB554_RS33445 PF11975 Family 4 glycosyl hydrolase C-terminal domain