locus-tag class description CDO28_RS00015 PF00884 Sulfatase CDO28_RS00020 PF02540 NAD synthase CDO28_RS00020 PF00795 Carbon-nitrogen hydrolase CDO28_RS00025 PF07676 WD40-like Beta Propeller Repeat CDO28_RS00050 PF00881 Nitroreductase family CDO28_RS00060 PF00765 Autoinducer synthase CDO28_RS00065 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS00065 PF03472 Autoinducer binding domain CDO28_RS00070 PF01515 Phosphate acetyl/butaryl transferase CDO28_RS00070 PF00390 Malic enzyme, N-terminal domain CDO28_RS00070 PF03949 Malic enzyme, NAD binding domain CDO28_RS00085 PF07690 Major Facilitator Superfamily CDO28_RS00090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS00090 PF13378 Enolase C-terminal domain-like CDO28_RS00095 PF02405 Permease MlaE CDO28_RS00100 PF00005 ABC transporter CDO28_RS00110 PF02470 MlaD protein CDO28_RS00110 PF03886 ABC-type transport auxiliary lipoprotein component CDO28_RS00115 PF05973 Phage derived protein Gp49-like (DUF891) CDO28_RS00125 PF01218 Coproporphyrinogen III oxidase CDO28_RS00140 PF09278 MerR, DNA binding CDO28_RS00140 PF00376 MerR family regulatory protein CDO28_RS00145 PF03358 NADPH-dependent FMN reductase CDO28_RS00150 PF00588 SpoU rRNA Methylase family CDO28_RS00155 PF00005 ABC transporter CDO28_RS00155 PF00664 ABC transporter transmembrane region CDO28_RS00160 PF00005 ABC transporter CDO28_RS00160 PF00664 ABC transporter transmembrane region CDO28_RS00165 PF00355 Rieske [2Fe-2S] domain CDO28_RS00165 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CDO28_RS00170 PF00032 Cytochrome b(C-terminal)/b6/petD CDO28_RS00170 PF00033 Cytochrome b/b6/petB CDO28_RS00175 PF00032 Cytochrome b(C-terminal)/b6/petD CDO28_RS00175 PF02167 Cytochrome C1 family CDO28_RS00175 PF00033 Cytochrome b/b6/petB CDO28_RS00195 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS00210 PF00809 Pterin binding enzyme CDO28_RS00215 PF02152 Dihydroneopterin aldolase CDO28_RS00220 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDO28_RS00230 PF05128 Domain of unknown function (DUF697) CDO28_RS00235 PF04317 YcjX-like family, DUF463 CDO28_RS00245 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDO28_RS00255 PF00072 Response regulator receiver domain CDO28_RS00255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS00255 PF13188 PAS domain CDO28_RS00255 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS00255 PF08448 PAS fold CDO28_RS00260 PF04227 Indigoidine synthase A like protein CDO28_RS00265 PF00294 pfkB family carbohydrate kinase CDO28_RS00270 PF00154 recA bacterial DNA recombination protein CDO28_RS00275 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO28_RS00275 PF01411 tRNA synthetases class II (A) CDO28_RS00275 PF02272 DHHA1 domain CDO28_RS00280 PF01740 STAS domain CDO28_RS00280 PF00916 Sulfate permease family CDO28_RS00300 PF12833 Helix-turn-helix domain CDO28_RS00300 PF14525 AraC-binding-like domain CDO28_RS00305 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO28_RS00315 PF00588 SpoU rRNA Methylase family CDO28_RS00320 PF01177 Asp/Glu/Hydantoin racemase CDO28_RS00330 PF00163 Ribosomal protein S4/S9 N-terminal domain CDO28_RS00330 PF01479 S4 domain CDO28_RS00335 PF04960 Glutaminase CDO28_RS00340 PF01171 PP-loop family CDO28_RS00345 PF00459 Inositol monophosphatase family CDO28_RS00350 PF07690 Major Facilitator Superfamily CDO28_RS00355 PF07690 Major Facilitator Superfamily CDO28_RS00360 PF00462 Glutaredoxin CDO28_RS00375 PF00586 AIR synthase related protein, N-terminal domain CDO28_RS00375 PF02769 AIR synthase related protein, C-terminal domain CDO28_RS00375 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDO28_RS00385 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS00385 PF00155 Aminotransferase class I and II CDO28_RS00405 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CDO28_RS00410 PF01259 SAICAR synthetase CDO28_RS00420 PF04303 PrpF protein CDO28_RS00435 PF01970 Tripartite tricarboxylate transporter TctA family CDO28_RS00445 PF03737 Aldolase/RraA CDO28_RS00450 PF02585 GlcNAc-PI de-N-acetylase CDO28_RS00455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS00455 PF03466 LysR substrate binding domain CDO28_RS00480 PF00206 Lyase CDO28_RS00480 PF10397 Adenylosuccinate lyase C-terminus CDO28_RS00495 PF00834 Ribulose-phosphate 3 epimerase family CDO28_RS00500 PF03576 Peptidase family S58 CDO28_RS00510 PF01613 Flavin reductase like domain CDO28_RS00515 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDO28_RS00515 PF05362 Lon protease (S16) C-terminal proteolytic domain CDO28_RS00515 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS00530 PF13478 XdhC Rossmann domain CDO28_RS00530 PF02625 XdhC and CoxI family CDO28_RS00535 PF12804 MobA-like NTP transferase domain CDO28_RS00535 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS00550 PF00270 DEAD/DEAH box helicase CDO28_RS00550 PF00271 Helicase conserved C-terminal domain CDO28_RS00555 PF01551 Peptidase family M23 CDO28_RS00555 PF08525 Opacity-associated protein A N-terminal motif CDO28_RS00555 PF01476 LysM domain CDO28_RS00560 PF04305 Protein of unknown function (DUF455) CDO28_RS00565 PF00578 AhpC/TSA family CDO28_RS00575 PF00579 tRNA synthetases class I (W and Y) CDO28_RS00580 PF03702 Anhydro-N-acetylmuramic acid kinase CDO28_RS00590 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO28_RS00595 PF00266 Aminotransferase class-V CDO28_RS00600 PF01458 Uncharacterized protein family (UPF0051) CDO28_RS00605 PF00005 ABC transporter CDO28_RS00610 PF01458 Uncharacterized protein family (UPF0051) CDO28_RS00615 PF00266 Aminotransferase class-V CDO28_RS00620 PF01883 Iron-sulfur cluster assembly protein CDO28_RS00625 PF01521 Iron-sulphur cluster biosynthesis CDO28_RS00630 PF01609 Transposase DDE domain CDO28_RS00635 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS00635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS00640 PF04002 RadC-like JAB domain CDO28_RS00645 PF00557 Metallopeptidase family M24 CDO28_RS00650 PF17746 SfsA N-terminal OB domain CDO28_RS00650 PF03749 Sugar fermentation stimulation protein RE domain CDO28_RS00655 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CDO28_RS00665 PF00155 Aminotransferase class I and II CDO28_RS00670 PF03447 Homoserine dehydrogenase, NAD binding domain CDO28_RS00670 PF00742 Homoserine dehydrogenase CDO28_RS00670 PF01842 ACT domain CDO28_RS00675 PF02272 DHHA1 domain CDO28_RS00675 PF17768 RecJ OB domain CDO28_RS00675 PF01368 DHH family CDO28_RS00710 PF00313 'Cold-shock' DNA-binding domain CDO28_RS00755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS00755 PF03466 LysR substrate binding domain CDO28_RS00795 PF01037 Lrp/AsnC ligand binding domain CDO28_RS00805 PF00753 Metallo-beta-lactamase superfamily CDO28_RS00805 PF04273 Putative phosphatase (DUF442) CDO28_RS00820 PF03466 LysR substrate binding domain CDO28_RS00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS00825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS00825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS00830 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS00835 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS00835 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS00840 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS00840 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS00845 PF00456 Transketolase, thiamine diphosphate binding domain CDO28_RS00850 PF02779 Transketolase, pyrimidine binding domain CDO28_RS00850 PF02780 Transketolase, C-terminal domain CDO28_RS00865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS00870 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS00885 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO28_RS00885 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO28_RS00890 PF00501 AMP-binding enzyme CDO28_RS00890 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS00915 PF12833 Helix-turn-helix domain CDO28_RS00915 PF01965 DJ-1/PfpI family CDO28_RS00975 PF02683 Cytochrome C biogenesis protein transmembrane region CDO28_RS00980 PF03547 Membrane transport protein CDO28_RS00985 PF01494 FAD binding domain CDO28_RS01000 PF00107 Zinc-binding dehydrogenase CDO28_RS01000 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS01005 PF00005 ABC transporter CDO28_RS01010 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS01015 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS01020 PF02608 ABC transporter substrate-binding protein PnrA-like CDO28_RS01025 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS01025 PF07729 FCD domain CDO28_RS01030 PF00571 CBS domain CDO28_RS01030 PF01595 Cyclin M transmembrane N-terminal domain CDO28_RS01030 PF03471 Transporter associated domain CDO28_RS01040 PF03453 MoeA N-terminal region (domain I and II) CDO28_RS01040 PF00994 Probable molybdopterin binding domain CDO28_RS01040 PF03454 MoeA C-terminal region (domain IV) CDO28_RS01045 PF01967 MoaC family CDO28_RS01050 PF00218 Indole-3-glycerol phosphate synthase CDO28_RS01055 PF02885 Glycosyl transferase family, helical bundle domain CDO28_RS01055 PF00591 Glycosyl transferase family, a/b domain CDO28_RS01060 PF13145 PPIC-type PPIASE domain CDO28_RS01065 PF02690 Na+/Pi-cotransporter CDO28_RS01070 PF14602 Hexapeptide repeat of succinyl-transferase CDO28_RS01070 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS01070 PF12804 MobA-like NTP transferase domain CDO28_RS01075 PF01380 SIS domain CDO28_RS01080 PF13508 Acetyltransferase (GNAT) domain CDO28_RS01090 PF00271 Helicase conserved C-terminal domain CDO28_RS01090 PF00270 DEAD/DEAH box helicase CDO28_RS01090 PF17191 RecG wedge domain CDO28_RS01095 PF03937 Flavinator of succinate dehydrogenase CDO28_RS01100 PF00271 Helicase conserved C-terminal domain CDO28_RS01100 PF17757 UvrB interaction domain CDO28_RS01100 PF02559 CarD-like/TRCF domain CDO28_RS01100 PF03461 TRCF domain CDO28_RS01100 PF00270 DEAD/DEAH box helicase CDO28_RS01115 PF03372 Endonuclease/Exonuclease/phosphatase family CDO28_RS01135 PF00884 Sulfatase CDO28_RS01140 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDO28_RS01140 PF12833 Helix-turn-helix domain CDO28_RS01150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS01165 PF00120 Glutamine synthetase, catalytic domain CDO28_RS01165 PF03951 Glutamine synthetase, beta-Grasp domain CDO28_RS01170 PF00543 Nitrogen regulatory protein P-II CDO28_RS01175 PF01256 Carbohydrate kinase CDO28_RS01175 PF03853 YjeF-related protein N-terminus CDO28_RS01180 PF00156 Phosphoribosyl transferase domain CDO28_RS01185 PF02464 Competence-damaged protein CDO28_RS01185 PF18146 Damage-inducible protein CinA KH domain CDO28_RS01185 PF00994 Probable molybdopterin binding domain CDO28_RS01190 PF03358 NADPH-dependent FMN reductase CDO28_RS01215 PF03795 YCII-related domain CDO28_RS01330 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CDO28_RS01360 PF01555 DNA methylase CDO28_RS01455 PF04466 Phage terminase large subunit CDO28_RS01455 PF17288 Terminase RNAseH like domain CDO28_RS01620 PF00182 Chitinase class I CDO28_RS01670 PF01068 ATP dependent DNA ligase domain CDO28_RS01670 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS01670 PF13298 DNA polymerase Ligase (LigD) CDO28_RS01690 PF02386 Cation transport protein CDO28_RS01695 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS01695 PF00585 C-terminal regulatory domain of Threonine dehydratase CDO28_RS01705 PF00149 Calcineurin-like phosphoesterase CDO28_RS01705 PF02872 5'-nucleotidase, C-terminal domain CDO28_RS01710 PF01037 Lrp/AsnC ligand binding domain CDO28_RS01715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDO28_RS01715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDO28_RS01730 PF00581 Rhodanese-like domain CDO28_RS01735 PF02272 DHHA1 domain CDO28_RS01735 PF01411 tRNA synthetases class II (A) CDO28_RS01735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO28_RS01740 PF00571 CBS domain CDO28_RS01740 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS01745 PF00106 short chain dehydrogenase CDO28_RS01760 PF00893 Small Multidrug Resistance protein CDO28_RS01765 PF00893 Small Multidrug Resistance protein CDO28_RS01785 PF00712 DNA polymerase III beta subunit, N-terminal domain CDO28_RS01785 PF02767 DNA polymerase III beta subunit, central domain CDO28_RS01785 PF02768 DNA polymerase III beta subunit, C-terminal domain CDO28_RS01850 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CDO28_RS01900 PF01972 Serine dehydrogenase proteinase CDO28_RS01900 PF01957 NfeD-like C-terminal, partner-binding CDO28_RS02035 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS02035 PF01068 ATP dependent DNA ligase domain CDO28_RS02035 PF13298 DNA polymerase Ligase (LigD) CDO28_RS02050 PF02086 D12 class N6 adenine-specific DNA methyltransferase CDO28_RS02085 PF00717 Peptidase S24-like CDO28_RS02085 PF01726 LexA DNA binding domain CDO28_RS02125 PF03330 Lytic transglycolase CDO28_RS02125 PF05036 Sporulation related domain CDO28_RS02130 PF00768 D-alanyl-D-alanine carboxypeptidase CDO28_RS02130 PF07943 Penicillin-binding protein 5, C-terminal domain CDO28_RS02135 PF02223 Thymidylate kinase CDO28_RS02140 PF09115 DNA polymerase III, delta subunit, C terminal CDO28_RS02150 PF08264 Anticodon-binding domain of tRNA CDO28_RS02150 PF09334 tRNA synthetases class I (M) CDO28_RS02155 PF01026 TatD related DNase CDO28_RS02190 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS02210 PF17969 L,D-transpeptidase C-terminal domain CDO28_RS02210 PF01476 LysM domain CDO28_RS02210 PF03734 L,D-transpeptidase catalytic domain CDO28_RS02235 PF00106 short chain dehydrogenase CDO28_RS02240 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS02245 PF01702 Queuine tRNA-ribosyltransferase CDO28_RS02250 PF02547 Queuosine biosynthesis protein CDO28_RS02255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDO28_RS02260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDO28_RS02265 PF01467 Cytidylyltransferase-like CDO28_RS02280 PF01554 MatE CDO28_RS02285 PF07690 Major Facilitator Superfamily CDO28_RS02290 PF04228 Putative neutral zinc metallopeptidase CDO28_RS02295 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS02295 PF00107 Zinc-binding dehydrogenase CDO28_RS02300 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO28_RS02300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS02300 PF02142 MGS-like domain CDO28_RS02310 PF07690 Major Facilitator Superfamily CDO28_RS02315 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO28_RS02315 PF03449 Transcription elongation factor, N-terminal CDO28_RS02320 PF00534 Glycosyl transferases group 1 CDO28_RS02325 PF13439 Glycosyltransferase Family 4 CDO28_RS02325 PF00534 Glycosyl transferases group 1 CDO28_RS02330 PF13439 Glycosyltransferase Family 4 CDO28_RS02330 PF00534 Glycosyl transferases group 1 CDO28_RS02335 PF00535 Glycosyl transferase family 2 CDO28_RS02340 PF01037 Lrp/AsnC ligand binding domain CDO28_RS02345 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS02350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS02350 PF03466 LysR substrate binding domain CDO28_RS02360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO28_RS02365 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CDO28_RS02390 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO28_RS02390 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO28_RS02395 PF01914 MarC family integral membrane protein CDO28_RS02400 PF00436 Single-strand binding protein family CDO28_RS02405 PF17760 UvrA interaction domain CDO28_RS02405 PF17755 UvrA DNA-binding domain CDO28_RS02415 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CDO28_RS02415 PF02867 Ribonucleotide reductase, barrel domain CDO28_RS02430 PF00899 ThiF family CDO28_RS02535 PF09382 RQC domain CDO28_RS02535 PF16124 RecQ zinc-binding CDO28_RS02535 PF00271 Helicase conserved C-terminal domain CDO28_RS02535 PF00270 DEAD/DEAH box helicase CDO28_RS02535 PF00570 HRDC domain CDO28_RS02545 PF17862 AAA+ lid domain CDO28_RS02545 PF01434 Peptidase family M41 CDO28_RS02545 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS02615 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS02615 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS02620 PF01597 Glycine cleavage H-protein CDO28_RS02625 PF02347 Glycine cleavage system P-protein CDO28_RS02630 PF05697 Bacterial trigger factor protein (TF) CDO28_RS02630 PF05698 Bacterial trigger factor protein (TF) C-terminus CDO28_RS02630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDO28_RS02650 PF01134 Glucose inhibited division protein A CDO28_RS02670 PF07549 SecD/SecF GG Motif CDO28_RS02670 PF02355 Protein export membrane protein CDO28_RS02675 PF02699 Preprotein translocase subunit CDO28_RS02685 PF01476 LysM domain CDO28_RS02685 PF01551 Peptidase family M23 CDO28_RS02700 PF01975 Survival protein SurE CDO28_RS02705 PF02403 Seryl-tRNA synthetase N-terminal domain CDO28_RS02705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO28_RS02710 PF00902 Sec-independent protein translocase protein (TatC) CDO28_RS02715 PF02416 mttA/Hcf106 family CDO28_RS02720 PF02416 mttA/Hcf106 family CDO28_RS02725 PF12857 TOBE-like domain CDO28_RS02725 PF17850 CysA C-terminal regulatory domain CDO28_RS02725 PF00005 ABC transporter CDO28_RS02730 PF04079 Segregation and condensation complex subunit ScpB CDO28_RS02735 PF02616 Segregation and condensation protein ScpA CDO28_RS02740 PF00933 Glycosyl hydrolase family 3 N terminal domain CDO28_RS02750 PF05746 DALR anticodon binding domain CDO28_RS02750 PF00750 tRNA synthetases class I (R) CDO28_RS02750 PF03485 Arginyl tRNA synthetase N terminal domain CDO28_RS02755 PF01966 HD domain CDO28_RS02755 PF13286 Phosphohydrolase-associated domain CDO28_RS02760 PF01521 Iron-sulphur cluster biosynthesis CDO28_RS02765 PF13396 Phospholipase_D-nuclease N-terminal CDO28_RS02765 PF13091 PLD-like domain CDO28_RS02775 PF08238 Sel1 repeat CDO28_RS02785 PF00133 tRNA synthetases class I (I, L, M and V) CDO28_RS02785 PF10458 Valyl tRNA synthetase tRNA binding arm CDO28_RS02785 PF08264 Anticodon-binding domain of tRNA CDO28_RS02795 PF02321 Outer membrane efflux protein CDO28_RS02805 PF02472 Biopolymer transport protein ExbD/TolR CDO28_RS02810 PF01618 MotA/TolQ/ExbB proton channel family CDO28_RS02820 PF00285 Citrate synthase, C-terminal domain CDO28_RS02835 PF02684 Lipid-A-disaccharide synthetase CDO28_RS02845 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS02845 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDO28_RS02850 PF07977 FabA-like domain CDO28_RS02855 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS02855 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDO28_RS02860 PF07244 Surface antigen variable number repeat CDO28_RS02860 PF01103 Surface antigen CDO28_RS02865 PF17820 PDZ domain CDO28_RS02865 PF02163 Peptidase family M50 CDO28_RS02875 PF01255 Putative undecaprenyl diphosphate synthase CDO28_RS02880 PF01765 Ribosome recycling factor CDO28_RS02885 PF00696 Amino acid kinase family CDO28_RS02890 PF00889 Elongation factor TS CDO28_RS02895 PF00318 Ribosomal protein S2 CDO28_RS02925 PF01230 HIT domain CDO28_RS02940 PF10431 C-terminal, D2-small domain, of ClpB protein CDO28_RS02940 PF02861 Clp amino terminal domain, pathogenicity island component CDO28_RS02940 PF17871 AAA lid domain CDO28_RS02940 PF07724 AAA domain (Cdc48 subfamily) CDO28_RS02940 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS02945 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDO28_RS02960 PF06426 Serine acetyltransferase, N-terminal CDO28_RS02960 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS02965 PF00561 alpha/beta hydrolase fold CDO28_RS02975 PF01494 FAD binding domain CDO28_RS02980 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS02985 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS02990 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS02995 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS03000 PF00005 ABC transporter CDO28_RS03010 PF00970 Oxidoreductase FAD-binding domain CDO28_RS03010 PF00175 Oxidoreductase NAD-binding domain CDO28_RS03020 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDO28_RS03020 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDO28_RS03030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS03030 PF14824 Sirohaem biosynthesis protein central CDO28_RS03030 PF10414 Sirohaem synthase dimerisation region CDO28_RS03040 PF03819 MazG nucleotide pyrophosphohydrolase domain CDO28_RS03050 PF00665 Integrase core domain CDO28_RS03060 PF01926 50S ribosome-binding GTPase CDO28_RS03060 PF16360 GTP-binding GTPase Middle Region CDO28_RS03060 PF13167 GTP-binding GTPase N-terminal CDO28_RS03065 PF17209 Hfq protein CDO28_RS03070 PF01063 Amino-transferase class IV CDO28_RS03075 PF02080 TrkA-C domain CDO28_RS03075 PF02254 TrkA-N domain CDO28_RS03080 PF00158 Sigma-54 interaction domain CDO28_RS03080 PF00072 Response regulator receiver domain CDO28_RS03080 PF02954 Bacterial regulatory protein, Fis family CDO28_RS03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS03085 PF00672 HAMP domain CDO28_RS03085 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS03085 PF00989 PAS fold CDO28_RS03090 PF02954 Bacterial regulatory protein, Fis family CDO28_RS03090 PF00072 Response regulator receiver domain CDO28_RS03090 PF00158 Sigma-54 interaction domain CDO28_RS03095 PF00989 PAS fold CDO28_RS03095 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS03095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS03100 PF01207 Dihydrouridine synthase (Dus) CDO28_RS03105 PF02542 YgbB family CDO28_RS03105 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDO28_RS03110 PF02464 Competence-damaged protein CDO28_RS03110 PF18146 Damage-inducible protein CinA KH domain CDO28_RS03110 PF00994 Probable molybdopterin binding domain CDO28_RS03115 PF03364 Polyketide cyclase / dehydrase and lipid transport CDO28_RS03125 PF04055 Radical SAM superfamily CDO28_RS03125 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CDO28_RS03135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS03135 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS03150 PF02817 e3 binding domain CDO28_RS03150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO28_RS03150 PF00364 Biotin-requiring enzyme CDO28_RS03155 PF00364 Biotin-requiring enzyme CDO28_RS03155 PF02780 Transketolase, C-terminal domain CDO28_RS03155 PF02779 Transketolase, pyrimidine binding domain CDO28_RS03160 PF00676 Dehydrogenase E1 component CDO28_RS03170 PF03952 Enolase, N-terminal domain CDO28_RS03170 PF00113 Enolase, C-terminal TIM barrel domain CDO28_RS03175 PF00793 DAHP synthetase I family CDO28_RS03185 PF00117 Glutamine amidotransferase class-I CDO28_RS03185 PF06418 CTP synthase N-terminus CDO28_RS03190 PF03840 Preprotein translocase SecG subunit CDO28_RS03195 PF00121 Triosephosphate isomerase CDO28_RS03210 PF04030 D-arabinono-1,4-lactone oxidase CDO28_RS03210 PF01565 FAD binding domain CDO28_RS03220 PF01751 Toprim domain CDO28_RS03220 PF00986 DNA gyrase B subunit, carboxyl terminus CDO28_RS03220 PF00204 DNA gyrase B CDO28_RS03220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS03225 PF00583 Acetyltransferase (GNAT) family CDO28_RS03260 PF03129 Anticodon binding domain CDO28_RS03260 PF02824 TGS domain CDO28_RS03260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDO28_RS03260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO28_RS03275 PF01809 Putative membrane protein insertion efficiency factor CDO28_RS03285 PF01227 GTP cyclohydrolase I CDO28_RS03290 PF01502 Phosphoribosyl-AMP cyclohydrolase CDO28_RS03300 PF01734 Patatin-like phospholipase CDO28_RS03310 PF00571 CBS domain CDO28_RS03360 PF03313 Serine dehydratase alpha chain CDO28_RS03360 PF03315 Serine dehydratase beta chain CDO28_RS03380 PF09278 MerR, DNA binding CDO28_RS03380 PF00376 MerR family regulatory protein CDO28_RS03385 PF00571 CBS domain CDO28_RS03385 PF01769 Divalent cation transporter CDO28_RS03385 PF03448 MgtE intracellular N domain CDO28_RS03390 PF01327 Polypeptide deformylase CDO28_RS03405 PF04293 SpoVR like protein CDO28_RS03410 PF04285 Protein of unknown function (DUF444) CDO28_RS03415 PF08298 PrkA AAA domain CDO28_RS03415 PF06798 PrkA serine protein kinase C-terminal domain CDO28_RS03425 PF03099 Biotin/lipoate A/B protein ligase family CDO28_RS03435 PF00107 Zinc-binding dehydrogenase CDO28_RS03435 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS03440 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDO28_RS03450 PF00756 Putative esterase CDO28_RS03455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDO28_RS03460 PF01479 S4 domain CDO28_RS03460 PF00849 RNA pseudouridylate synthase CDO28_RS03465 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS03475 PF00893 Small Multidrug Resistance protein CDO28_RS03480 PF16193 AAA C-terminal domain CDO28_RS03480 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS03480 PF12002 MgsA AAA+ ATPase C terminal CDO28_RS03485 PF00595 PDZ domain CDO28_RS03485 PF13180 PDZ domain CDO28_RS03490 PF00174 Oxidoreductase molybdopterin binding domain CDO28_RS03495 PF01794 Ferric reductase like transmembrane component CDO28_RS03505 PF01196 Ribosomal protein L17 CDO28_RS03510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDO28_RS03510 PF01000 RNA polymerase Rpb3/RpoA insert domain CDO28_RS03510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDO28_RS03515 PF00411 Ribosomal protein S11 CDO28_RS03520 PF00416 Ribosomal protein S13/S18 CDO28_RS03530 PF00344 SecY translocase CDO28_RS03535 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDO28_RS03540 PF00327 Ribosomal protein L30p/L7e CDO28_RS03545 PF03719 Ribosomal protein S5, C-terminal domain CDO28_RS03545 PF00333 Ribosomal protein S5, N-terminal domain CDO28_RS03550 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDO28_RS03555 PF00347 Ribosomal protein L6 CDO28_RS03560 PF00410 Ribosomal protein S8 CDO28_RS03565 PF00253 Ribosomal protein S14p/S29e CDO28_RS03570 PF00281 Ribosomal protein L5 CDO28_RS03570 PF00673 ribosomal L5P family C-terminus CDO28_RS03575 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDO28_RS03575 PF00467 KOW motif CDO28_RS03580 PF00238 Ribosomal protein L14p/L23e CDO28_RS03585 PF00366 Ribosomal protein S17 CDO28_RS03590 PF00831 Ribosomal L29 protein CDO28_RS03595 PF00252 Ribosomal protein L16p/L10e CDO28_RS03600 PF00189 Ribosomal protein S3, C-terminal domain CDO28_RS03600 PF07650 KH domain CDO28_RS03605 PF00237 Ribosomal protein L22p/L17e CDO28_RS03610 PF00203 Ribosomal protein S19 CDO28_RS03615 PF00181 Ribosomal Proteins L2, RNA binding domain CDO28_RS03615 PF03947 Ribosomal Proteins L2, C-terminal domain CDO28_RS03620 PF00276 Ribosomal protein L23 CDO28_RS03625 PF00573 Ribosomal protein L4/L1 family CDO28_RS03630 PF00297 Ribosomal protein L3 CDO28_RS03635 PF00338 Ribosomal protein S10p/S20e CDO28_RS03640 PF03143 Elongation factor Tu C-terminal domain CDO28_RS03640 PF03144 Elongation factor Tu domain 2 CDO28_RS03640 PF00009 Elongation factor Tu GTP binding domain CDO28_RS03645 PF00679 Elongation factor G C-terminus CDO28_RS03645 PF14492 Elongation Factor G, domain II CDO28_RS03645 PF00009 Elongation factor Tu GTP binding domain CDO28_RS03645 PF03144 Elongation factor Tu domain 2 CDO28_RS03645 PF03764 Elongation factor G, domain IV CDO28_RS03650 PF00177 Ribosomal protein S7p/S5e CDO28_RS03655 PF00164 Ribosomal protein S12/S23 CDO28_RS03665 PF04983 RNA polymerase Rpb1, domain 3 CDO28_RS03665 PF00623 RNA polymerase Rpb1, domain 2 CDO28_RS03665 PF04998 RNA polymerase Rpb1, domain 5 CDO28_RS03665 PF04997 RNA polymerase Rpb1, domain 1 CDO28_RS03665 PF05000 RNA polymerase Rpb1, domain 4 CDO28_RS03670 PF04561 RNA polymerase Rpb2, domain 2 CDO28_RS03670 PF10385 RNA polymerase beta subunit external 1 domain CDO28_RS03670 PF00562 RNA polymerase Rpb2, domain 6 CDO28_RS03670 PF04563 RNA polymerase beta subunit CDO28_RS03670 PF04560 RNA polymerase Rpb2, domain 7 CDO28_RS03670 PF04565 RNA polymerase Rpb2, domain 3 CDO28_RS03675 PF16320 Ribosomal protein L7/L12 dimerisation domain CDO28_RS03675 PF00542 Ribosomal protein L7/L12 C-terminal domain CDO28_RS03680 PF00466 Ribosomal protein L10 CDO28_RS03685 PF00687 Ribosomal protein L1p/L10e family CDO28_RS03690 PF00298 Ribosomal protein L11, RNA binding domain CDO28_RS03690 PF03946 Ribosomal protein L11, N-terminal domain CDO28_RS03695 PF00467 KOW motif CDO28_RS03695 PF02357 Transcription termination factor nusG CDO28_RS03700 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDO28_RS03710 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS03720 PF00009 Elongation factor Tu GTP binding domain CDO28_RS03720 PF03144 Elongation factor Tu domain 2 CDO28_RS03720 PF03143 Elongation factor Tu C-terminal domain CDO28_RS03735 PF00588 SpoU rRNA Methylase family CDO28_RS03735 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO28_RS03745 PF02525 Flavodoxin-like fold CDO28_RS03750 PF03466 LysR substrate binding domain CDO28_RS03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS03765 PF01513 ATP-NAD kinase CDO28_RS03780 PF00472 RF-1 domain CDO28_RS03780 PF03462 PCRF domain CDO28_RS03790 PF17092 Penicillin-binding protein OB-like domain CDO28_RS03790 PF00912 Transglycosylase CDO28_RS03790 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS03795 PF01520 N-acetylmuramoyl-L-alanine amidase CDO28_RS03795 PF11741 AMIN domain CDO28_RS03805 PF00575 S1 RNA binding domain CDO28_RS03805 PF10150 Ribonuclease E/G family CDO28_RS03805 PF12111 Polyribonucleotide phosphorylase C terminal CDO28_RS03830 PF00155 Aminotransferase class I and II CDO28_RS03845 PF01220 Dehydroquinase class II CDO28_RS03850 PF00364 Biotin-requiring enzyme CDO28_RS03855 PF00289 Biotin carboxylase, N-terminal domain CDO28_RS03855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS03855 PF02785 Biotin carboxylase C-terminal domain CDO28_RS03860 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDO28_RS03880 PF02637 GatB domain CDO28_RS03880 PF02934 GatB/GatE catalytic domain CDO28_RS03885 PF09857 Putative toxin of bacterial toxin-antitoxin pair CDO28_RS03890 PF01425 Amidase CDO28_RS03895 PF02686 Glu-tRNAGln amidotransferase C subunit CDO28_RS03905 PF03652 Holliday junction resolvase CDO28_RS03925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS03925 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS03925 PF18158 Adaptive response protein AidB N-terminal domain CDO28_RS03930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO28_RS03930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO28_RS03935 PF01979 Amidohydrolase family CDO28_RS03940 PF02660 Glycerol-3-phosphate acyltransferase CDO28_RS03945 PF17782 DprA winged helix domain CDO28_RS03945 PF02481 DNA recombination-mediator protein A CDO28_RS03950 PF01131 DNA topoisomerase CDO28_RS03950 PF01751 Toprim domain CDO28_RS03950 PF13368 Topoisomerase C-terminal repeat CDO28_RS03950 PF01396 Topoisomerase DNA binding C4 zinc finger CDO28_RS03955 PF00773 RNB domain CDO28_RS03955 PF17876 Cold shock domain CDO28_RS03955 PF00575 S1 RNA binding domain CDO28_RS03955 PF08461 Ribonuclease R winged-helix domain CDO28_RS03955 PF08206 Ribonuclease B OB domain CDO28_RS03975 PF00471 Ribosomal protein L33 CDO28_RS03980 PF00072 Response regulator receiver domain CDO28_RS03980 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS03985 PF00072 Response regulator receiver domain CDO28_RS03995 PF00817 impB/mucB/samB family CDO28_RS03995 PF11799 impB/mucB/samB family C-terminal domain CDO28_RS04005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO28_RS04005 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO28_RS04005 PF02811 PHP domain CDO28_RS04005 PF14579 Helix-hairpin-helix motif CDO28_RS04010 PF00005 ABC transporter CDO28_RS04015 PF02687 FtsX-like permease family CDO28_RS04015 PF12704 MacB-like periplasmic core domain CDO28_RS04020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDO28_RS04020 PF03129 Anticodon binding domain CDO28_RS04050 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDO28_RS04050 PF12706 Beta-lactamase superfamily domain CDO28_RS04050 PF17770 Ribonuclease J C-terminal domain CDO28_RS04055 PF02237 Biotin protein ligase C terminal domain CDO28_RS04055 PF03099 Biotin/lipoate A/B protein ligase family CDO28_RS04060 PF00361 Proton-conducting membrane transporter CDO28_RS04065 PF00361 Proton-conducting membrane transporter CDO28_RS04065 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDO28_RS04070 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO28_RS04070 PF00361 Proton-conducting membrane transporter CDO28_RS04075 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO28_RS04080 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDO28_RS04085 PF12838 4Fe-4S dicluster domain CDO28_RS04090 PF00146 NADH dehydrogenase CDO28_RS04095 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CDO28_RS04095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO28_RS04095 PF00384 Molybdopterin oxidoreductase CDO28_RS04100 PF00829 Ribosomal prokaryotic L21 protein CDO28_RS04105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDO28_RS04105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO28_RS04105 PF10531 SLBB domain CDO28_RS04120 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDO28_RS04125 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDO28_RS04130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDO28_RS04135 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDO28_RS04165 PF13514 AAA domain CDO28_RS04170 PF00149 Calcineurin-like phosphoesterase CDO28_RS04190 PF00216 Bacterial DNA-binding protein CDO28_RS04195 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDO28_RS04195 PF05362 Lon protease (S16) C-terminal proteolytic domain CDO28_RS04195 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS04200 PF07724 AAA domain (Cdc48 subfamily) CDO28_RS04200 PF06689 ClpX C4-type zinc finger CDO28_RS04200 PF10431 C-terminal, D2-small domain, of ClpB protein CDO28_RS04205 PF00574 Clp protease CDO28_RS04210 PF13091 PLD-like domain CDO28_RS04220 PF00067 Cytochrome P450 CDO28_RS04235 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS04240 PF13380 CoA binding domain CDO28_RS04250 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS04265 PF00572 Ribosomal protein L13 CDO28_RS04270 PF00380 Ribosomal protein S9/S16 CDO28_RS04275 PF00491 Arginase family CDO28_RS04280 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO28_RS04285 PF02628 Cytochrome oxidase assembly protein CDO28_RS04300 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS04310 PF02706 Chain length determinant protein CDO28_RS04320 PF13439 Glycosyltransferase Family 4 CDO28_RS04320 PF00534 Glycosyl transferases group 1 CDO28_RS04325 PF02397 Bacterial sugar transferase CDO28_RS04335 PF00534 Glycosyl transferases group 1 CDO28_RS04335 PF13439 Glycosyltransferase Family 4 CDO28_RS04365 PF13411 MerR HTH family regulatory protein CDO28_RS04370 PF00216 Bacterial DNA-binding protein CDO28_RS04375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDO28_RS04375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDO28_RS04380 PF02504 Fatty acid synthesis protein CDO28_RS04400 PF03030 Inorganic H+ pyrophosphatase CDO28_RS04405 PF07690 Major Facilitator Superfamily CDO28_RS04410 PF01029 NusB family CDO28_RS04415 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDO28_RS04425 PF00958 GMP synthase C terminal domain CDO28_RS04425 PF13302 Acetyltransferase (GNAT) domain CDO28_RS04425 PF00117 Glutamine amidotransferase class-I CDO28_RS04425 PF13673 Acetyltransferase (GNAT) domain CDO28_RS04425 PF03352 Methyladenine glycosylase CDO28_RS04435 PF00677 Lumazine binding domain CDO28_RS04440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO28_RS04440 PF01872 RibD C-terminal domain CDO28_RS04445 PF03477 ATP cone domain CDO28_RS04450 PF00464 Serine hydroxymethyltransferase CDO28_RS04455 PF03734 L,D-transpeptidase catalytic domain CDO28_RS04470 PF00490 Delta-aminolevulinic acid dehydratase CDO28_RS04480 PF04376 Arginine-tRNA-protein transferase, N terminus CDO28_RS04480 PF04377 Arginine-tRNA-protein transferase, C terminus CDO28_RS04495 PF03989 DNA gyrase C-terminal domain, beta-propeller CDO28_RS04495 PF00521 DNA gyrase/topoisomerase IV, subunit A CDO28_RS04510 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS04520 PF01336 OB-fold nucleic acid binding domain CDO28_RS04520 PF00152 tRNA synthetases class II (D, K and N) CDO28_RS04520 PF02938 GAD domain CDO28_RS04535 PF07731 Multicopper oxidase CDO28_RS04535 PF00394 Multicopper oxidase CDO28_RS04535 PF07732 Multicopper oxidase CDO28_RS04540 PF01612 3'-5' exonuclease CDO28_RS04540 PF00570 HRDC domain CDO28_RS04545 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS04555 PF02541 Ppx/GppA phosphatase family CDO28_RS04560 PF13089 Polyphosphate kinase N-terminal domain CDO28_RS04560 PF17941 Polyphosphate kinase C-terminal domain 1 CDO28_RS04560 PF13090 Polyphosphate kinase C-terminal domain 2 CDO28_RS04560 PF02503 Polyphosphate kinase middle domain CDO28_RS04570 PF01594 AI-2E family transporter CDO28_RS04575 PF00586 AIR synthase related protein, N-terminal domain CDO28_RS04575 PF02769 AIR synthase related protein, C-terminal domain CDO28_RS04580 PF00551 Formyl transferase CDO28_RS04590 PF09924 Uncharacterised conserved protein (DUF2156) CDO28_RS04590 PF03706 Lysylphosphatidylglycerol synthase TM region CDO28_RS04595 PF00293 NUDIX domain CDO28_RS04600 PF01568 Molydopterin dinucleotide binding domain CDO28_RS04600 PF00384 Molybdopterin oxidoreductase CDO28_RS04600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS04605 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDO28_RS04625 PF13505 Outer membrane protein beta-barrel domain CDO28_RS04635 PF08459 UvrC Helix-hairpin-helix N-terminal CDO28_RS04635 PF01541 GIY-YIG catalytic domain CDO28_RS04635 PF02151 UvrB/uvrC motif CDO28_RS04640 PF01066 CDP-alcohol phosphatidyltransferase CDO28_RS04650 PF02391 MoaE protein CDO28_RS04675 PF00334 Nucleoside diphosphate kinase CDO28_RS04680 PF13417 Glutathione S-transferase, N-terminal domain CDO28_RS04690 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS04690 PF00501 AMP-binding enzyme CDO28_RS04700 PF00005 ABC transporter CDO28_RS04700 PF12848 ABC transporter CDO28_RS04710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS04725 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO28_RS04725 PF00883 Cytosol aminopeptidase family, catalytic domain CDO28_RS04755 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDO28_RS04760 PF00398 Ribosomal RNA adenine dimethylase CDO28_RS04770 PF00625 Guanylate kinase CDO28_RS04775 PF03755 YicC-like family, N-terminal region CDO28_RS04775 PF08340 Domain of unknown function (DUF1732) CDO28_RS04780 PF02618 YceG-like family CDO28_RS04785 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS04785 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS04790 PF00550 Phosphopantetheine attachment site CDO28_RS04800 PF00698 Acyl transferase domain CDO28_RS04805 PF00248 Aldo/keto reductase family CDO28_RS04815 PF01250 Ribosomal protein S6 CDO28_RS04820 PF01084 Ribosomal protein S18 CDO28_RS04830 PF03948 Ribosomal protein L9, C-terminal domain CDO28_RS04830 PF01281 Ribosomal protein L9, N-terminal domain CDO28_RS04835 PF13533 Biotin-lipoyl like CDO28_RS04850 PF00772 DnaB-like helicase N terminal domain CDO28_RS04850 PF03796 DnaB-like helicase C terminal domain CDO28_RS04865 PF12852 Cupin CDO28_RS04865 PF12833 Helix-turn-helix domain CDO28_RS04870 PF00842 Alanine racemase, C-terminal domain CDO28_RS04870 PF01168 Alanine racemase, N-terminal domain CDO28_RS04875 PF06745 KaiC CDO28_RS04875 PF18073 Rubredoxin metal binding domain CDO28_RS04885 PF00156 Phosphoribosyl transferase domain CDO28_RS04885 PF13537 Glutamine amidotransferase domain CDO28_RS04890 PF00106 short chain dehydrogenase CDO28_RS04895 PF01066 CDP-alcohol phosphatidyltransferase CDO28_RS04900 PF02666 Phosphatidylserine decarboxylase CDO28_RS04905 PF00664 ABC transporter transmembrane region CDO28_RS04905 PF00005 ABC transporter CDO28_RS04915 PF03641 Possible lysine decarboxylase CDO28_RS04920 PF00892 EamA-like transporter family CDO28_RS04925 PF00682 HMGL-like CDO28_RS04925 PF08502 LeuA allosteric (dimerisation) domain CDO28_RS04930 PF00561 alpha/beta hydrolase fold CDO28_RS04950 PF01406 tRNA synthetases class I (C) catalytic domain CDO28_RS04970 PF00293 NUDIX domain CDO28_RS04990 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS04995 PF01966 HD domain CDO28_RS05020 PF00005 ABC transporter CDO28_RS05020 PF03412 Peptidase C39 family CDO28_RS05020 PF00664 ABC transporter transmembrane region CDO28_RS05025 PF00080 Copper/zinc superoxide dismutase (SODC) CDO28_RS05030 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDO28_RS05030 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDO28_RS05035 PF02910 Fumarate reductase flavoprotein C-term CDO28_RS05035 PF00890 FAD binding domain CDO28_RS05040 PF02445 Quinolinate synthetase A protein CDO28_RS05055 PF01966 HD domain CDO28_RS05070 PF02565 Recombination protein O C terminal CDO28_RS05070 PF11967 Recombination protein O N terminal CDO28_RS05075 PF01476 LysM domain CDO28_RS05075 PF03734 L,D-transpeptidase catalytic domain CDO28_RS05095 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS05100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO28_RS05100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO28_RS05100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO28_RS05110 PF16921 Tex protein YqgF-like domain CDO28_RS05110 PF17674 HHH domain CDO28_RS05110 PF00575 S1 RNA binding domain CDO28_RS05110 PF09371 Tex-like protein N-terminal domain CDO28_RS05120 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO28_RS05130 PF00230 Major intrinsic protein CDO28_RS05135 PF03960 ArsC family CDO28_RS05140 PF03358 NADPH-dependent FMN reductase CDO28_RS05145 PF07650 KH domain CDO28_RS05145 PF01926 50S ribosome-binding GTPase CDO28_RS05150 PF00035 Double-stranded RNA binding motif CDO28_RS05150 PF14622 Ribonuclease-III-like CDO28_RS05155 PF10502 Signal peptidase, peptidase S26 CDO28_RS05160 PF01648 4'-phosphopantetheinyl transferase superfamily CDO28_RS05185 PF13291 ACT domain CDO28_RS05185 PF02824 TGS domain CDO28_RS05185 PF04607 Region found in RelA / SpoT proteins CDO28_RS05190 PF01192 RNA polymerase Rpb6 CDO28_RS05200 PF12951 Passenger-associated-transport-repeat CDO28_RS05210 PF01668 SmpB protein CDO28_RS05215 PF00701 Dihydrodipicolinate synthetase family CDO28_RS05220 PF01464 Transglycosylase SLT domain CDO28_RS05220 PF14718 Soluble lytic murein transglycosylase L domain CDO28_RS05225 PF07886 BA14K-like protein CDO28_RS05230 PF02530 Porin subfamily CDO28_RS05235 PF00589 Phage integrase family CDO28_RS05235 PF13495 Phage integrase, N-terminal SAM-like domain CDO28_RS05240 PF02530 Porin subfamily CDO28_RS05250 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CDO28_RS05255 PF01381 Helix-turn-helix CDO28_RS05270 PF00155 Aminotransferase class I and II CDO28_RS05285 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS05285 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS05300 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CDO28_RS05305 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CDO28_RS05305 PF01048 Phosphorylase superfamily CDO28_RS05315 PF00535 Glycosyl transferase family 2 CDO28_RS05320 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CDO28_RS05330 PF01638 HxlR-like helix-turn-helix CDO28_RS05335 PF00107 Zinc-binding dehydrogenase CDO28_RS05335 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS05340 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS05360 PF00012 Hsp70 protein CDO28_RS05365 PF03167 Uracil DNA glycosylase superfamily CDO28_RS05380 PF07690 Major Facilitator Superfamily CDO28_RS05390 PF01433 Peptidase family M1 domain CDO28_RS05390 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CDO28_RS05390 PF11940 Domain of unknown function (DUF3458) Ig-like fold CDO28_RS05395 PF00989 PAS fold CDO28_RS05395 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS05395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS05400 PF08335 GlnD PII-uridylyltransferase CDO28_RS05400 PF03710 Glutamate-ammonia ligase adenylyltransferase CDO28_RS05405 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS05405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS05405 PF00672 HAMP domain CDO28_RS05410 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS05410 PF00072 Response regulator receiver domain CDO28_RS05415 PF13180 PDZ domain CDO28_RS05420 PF03918 Cytochrome C biogenesis protein CDO28_RS05425 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CDO28_RS05425 PF01578 Cytochrome C assembly protein CDO28_RS05430 PF03100 CcmE CDO28_RS05445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS05450 PF00072 Response regulator receiver domain CDO28_RS05450 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS05475 PF03692 Putative zinc- or iron-chelating domain CDO28_RS05480 PF00912 Transglycosylase CDO28_RS05480 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS05525 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS05530 PF17264 Family of unknown function (DUF5330) CDO28_RS05535 PF02657 Fe-S metabolism associated domain CDO28_RS05540 PF05443 ROS/MUCR transcriptional regulator protein CDO28_RS05545 PF03334 Na+/H+ antiporter subunit CDO28_RS05550 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDO28_RS05555 PF01899 Na+/H+ ion antiporter subunit CDO28_RS05560 PF00361 Proton-conducting membrane transporter CDO28_RS05565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO28_RS05570 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDO28_RS05575 PF13244 Domain of unknown function (DUF4040) CDO28_RS05575 PF00361 Proton-conducting membrane transporter CDO28_RS05575 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO28_RS05580 PF01641 SelR domain CDO28_RS05590 PF03006 Haemolysin-III related CDO28_RS05600 PF00582 Universal stress protein family CDO28_RS05605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO28_RS05610 PF00326 Prolyl oligopeptidase family CDO28_RS05610 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CDO28_RS05620 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDO28_RS05625 PF01011 PQQ enzyme repeat CDO28_RS05635 PF09278 MerR, DNA binding CDO28_RS05635 PF00376 MerR family regulatory protein CDO28_RS05645 PF00034 Cytochrome c CDO28_RS05650 PF01322 Cytochrome C' CDO28_RS05655 PF01810 LysE type translocator CDO28_RS05665 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDO28_RS05665 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDO28_RS05680 PF01063 Amino-transferase class IV CDO28_RS05685 PF00107 Zinc-binding dehydrogenase CDO28_RS05685 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS05695 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS05700 PF13649 Methyltransferase domain CDO28_RS05710 PF00248 Aldo/keto reductase family CDO28_RS05720 PF05872 Bacterial protein of unknown function (DUF853) CDO28_RS05725 PF03831 PhnA domain CDO28_RS05725 PF08274 PhnA Zinc-Ribbon CDO28_RS05730 PF02566 OsmC-like protein CDO28_RS05735 PF01047 MarR family CDO28_RS05740 PF17969 L,D-transpeptidase C-terminal domain CDO28_RS05740 PF01476 LysM domain CDO28_RS05740 PF03734 L,D-transpeptidase catalytic domain CDO28_RS05745 PF00563 EAL domain CDO28_RS05745 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS05745 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS05755 PF03466 LysR substrate binding domain CDO28_RS05765 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS05765 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS05780 PF14765 Polyketide synthase dehydratase CDO28_RS05780 PF00107 Zinc-binding dehydrogenase CDO28_RS05780 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS05780 PF00698 Acyl transferase domain CDO28_RS05780 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS05780 PF16197 Ketoacyl-synthetase C-terminal extension CDO28_RS05780 PF08659 KR domain CDO28_RS05780 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS05780 PF00550 Phosphopantetheine attachment site CDO28_RS05785 PF13188 PAS domain CDO28_RS05785 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS05785 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS05785 PF00563 EAL domain CDO28_RS05795 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS05795 PF13977 BetI-type transcriptional repressor, C-terminal CDO28_RS05800 PF00884 Sulfatase CDO28_RS05800 PF12411 Choline sulfatase enzyme C terminal CDO28_RS05805 PF00171 Aldehyde dehydrogenase family CDO28_RS05815 PF00732 GMC oxidoreductase CDO28_RS05815 PF05199 GMC oxidoreductase CDO28_RS05830 PF01507 Phosphoadenosine phosphosulfate reductase family CDO28_RS05835 PF01507 Phosphoadenosine phosphosulfate reductase family CDO28_RS05840 PF00009 Elongation factor Tu GTP binding domain CDO28_RS05865 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDO28_RS05865 PF12795 Mechanosensitive ion channel porin domain CDO28_RS05865 PF00924 Mechanosensitive ion channel CDO28_RS05900 PF00391 PEP-utilising enzyme, mobile domain CDO28_RS05900 PF02896 PEP-utilising enzyme, TIM barrel domain CDO28_RS05900 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDO28_RS05905 PF02463 RecF/RecN/SMC N terminal domain CDO28_RS05925 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO28_RS05925 PF14815 NUDIX domain CDO28_RS05935 PF18755 Restriction Enzyme Adenine Methylase Associated CDO28_RS05935 PF01555 DNA methylase CDO28_RS05945 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS05950 PF13458 Periplasmic binding protein CDO28_RS05960 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS05960 PF14821 Threonine synthase N terminus CDO28_RS05965 PF05193 Peptidase M16 inactive domain CDO28_RS05965 PF00675 Insulinase (Peptidase family M16) CDO28_RS05970 PF13302 Acetyltransferase (GNAT) domain CDO28_RS05975 PF08447 PAS fold CDO28_RS05975 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS05975 PF08448 PAS fold CDO28_RS05975 PF00563 EAL domain CDO28_RS05980 PF02622 Uncharacterized ACR, COG1678 CDO28_RS05990 PF08534 Redoxin CDO28_RS05990 PF00462 Glutaredoxin CDO28_RS05995 PF00075 RNase H CDO28_RS06000 PF01636 Phosphotransferase enzyme family CDO28_RS06005 PF02401 LytB protein CDO28_RS06010 PF02104 SURF1 family CDO28_RS06025 PF00510 Cytochrome c oxidase subunit III CDO28_RS06030 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CDO28_RS06040 PF01040 UbiA prenyltransferase family CDO28_RS06045 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS06050 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDO28_RS06050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO28_RS06065 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDO28_RS06065 PF00925 GTP cyclohydrolase II CDO28_RS06070 PF01264 Chorismate synthase CDO28_RS06080 PF00300 Histidine phosphatase superfamily (branch 1) CDO28_RS06090 PF00226 DnaJ domain CDO28_RS06090 PF01556 DnaJ C terminal domain CDO28_RS06090 PF00684 DnaJ central domain CDO28_RS06100 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDO28_RS06100 PF01243 Pyridoxamine 5'-phosphate oxidase CDO28_RS06110 PF07943 Penicillin-binding protein 5, C-terminal domain CDO28_RS06110 PF00768 D-alanyl-D-alanine carboxypeptidase CDO28_RS06115 PF01523 Putative modulator of DNA gyrase CDO28_RS06120 PF06224 Winged helix DNA-binding domain CDO28_RS06125 PF00005 ABC transporter CDO28_RS06130 PF02361 Cobalt transport protein CDO28_RS06135 PF02632 BioY family CDO28_RS06140 PF00501 AMP-binding enzyme CDO28_RS06140 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS06145 PF02803 Thiolase, C-terminal domain CDO28_RS06145 PF00108 Thiolase, N-terminal domain CDO28_RS06155 PF00107 Zinc-binding dehydrogenase CDO28_RS06155 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS06160 PF00850 Histone deacetylase domain CDO28_RS06165 PF02609 Exonuclease VII small subunit CDO28_RS06170 PF02678 Pirin CDO28_RS06170 PF05726 Pirin C-terminal cupin domain CDO28_RS06175 PF02779 Transketolase, pyrimidine binding domain CDO28_RS06175 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDO28_RS06175 PF02780 Transketolase, C-terminal domain CDO28_RS06180 PF01479 S4 domain CDO28_RS06180 PF01728 FtsJ-like methyltransferase CDO28_RS06185 PF05958 tRNA (Uracil-5-)-methyltransferase CDO28_RS06190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS06190 PF02743 Cache domain CDO28_RS06190 PF00672 HAMP domain CDO28_RS06205 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDO28_RS06205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS06205 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS06205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS06220 PF07886 BA14K-like protein CDO28_RS06230 PF00970 Oxidoreductase FAD-binding domain CDO28_RS06230 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS06230 PF00175 Oxidoreductase NAD-binding domain CDO28_RS06235 PF00355 Rieske [2Fe-2S] domain CDO28_RS06235 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDO28_RS06245 PF03481 Putative GTP-binding controlling metal-binding CDO28_RS06245 PF01300 Telomere recombination CDO28_RS06250 PF01565 FAD binding domain CDO28_RS06250 PF02913 FAD linked oxidases, C-terminal domain CDO28_RS06265 PF01040 UbiA prenyltransferase family CDO28_RS06270 PF06629 MltA-interacting protein MipA CDO28_RS06275 PF02311 AraC-like ligand binding domain CDO28_RS06275 PF12833 Helix-turn-helix domain CDO28_RS06280 PF07690 Major Facilitator Superfamily CDO28_RS06290 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS06290 PF00563 EAL domain CDO28_RS06295 PF02843 Phosphoribosylglycinamide synthetase, C domain CDO28_RS06295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDO28_RS06295 PF02844 Phosphoribosylglycinamide synthetase, N domain CDO28_RS06305 PF04463 Protein of unknown function (DUF523) CDO28_RS06310 PF05746 DALR anticodon binding domain CDO28_RS06310 PF02092 Glycyl-tRNA synthetase beta subunit CDO28_RS06320 PF04011 LemA family CDO28_RS06330 PF02091 Glycyl-tRNA synthetase alpha subunit CDO28_RS06340 PF06965 Na+/H+ antiporter 1 CDO28_RS06340 PF01343 Peptidase family S49 CDO28_RS06355 PF00348 Polyprenyl synthetase CDO28_RS06365 PF00288 GHMP kinases N terminal domain CDO28_RS06365 PF08544 GHMP kinases C terminal CDO28_RS06370 PF00994 Probable molybdopterin binding domain CDO28_RS06390 PF01351 Ribonuclease HII CDO28_RS06400 PF00430 ATP synthase B/B' CF(0) CDO28_RS06405 PF00430 ATP synthase B/B' CF(0) CDO28_RS06410 PF00137 ATP synthase subunit C CDO28_RS06415 PF00119 ATP synthase A chain CDO28_RS06420 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter CDO28_RS06430 PF02705 K+ potassium transporter CDO28_RS06435 PF01544 CorA-like Mg2+ transporter protein CDO28_RS06440 PF01883 Iron-sulfur cluster assembly protein CDO28_RS06440 PF10609 NUBPL iron-transfer P-loop NTPase CDO28_RS06445 PF03472 Autoinducer binding domain CDO28_RS06445 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS06450 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS06450 PF03472 Autoinducer binding domain CDO28_RS06455 PF09339 IclR helix-turn-helix domain CDO28_RS06455 PF01614 Bacterial transcriptional regulator CDO28_RS06465 PF05035 2-keto-3-deoxy-galactonokinase CDO28_RS06470 PF01081 KDPG and KHG aldolase CDO28_RS06475 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO28_RS06480 PF00920 Dehydratase family CDO28_RS06495 PF06253 Trimethylamine methyltransferase (MTTB) CDO28_RS06500 PF03466 LysR substrate binding domain CDO28_RS06500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS06505 PF00563 EAL domain CDO28_RS06505 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS06505 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS06505 PF13188 PAS domain CDO28_RS06510 PF00072 Response regulator receiver domain CDO28_RS06515 PF01119 DNA mismatch repair protein, C-terminal domain CDO28_RS06515 PF08676 MutL C terminal dimerisation domain CDO28_RS06530 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDO28_RS06540 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDO28_RS06540 PF00534 Glycosyl transferases group 1 CDO28_RS06550 PF00459 Inositol monophosphatase family CDO28_RS06555 PF01523 Putative modulator of DNA gyrase CDO28_RS06560 PF02254 TrkA-N domain CDO28_RS06560 PF00999 Sodium/hydrogen exchanger family CDO28_RS06565 PF07704 Rv0623-like transcription factor CDO28_RS06570 PF01850 PIN domain CDO28_RS06575 PF01734 Patatin-like phospholipase CDO28_RS06585 PF01479 S4 domain CDO28_RS06585 PF00849 RNA pseudouridylate synthase CDO28_RS06590 PF14437 MafB19-like deaminase CDO28_RS06605 PF00133 tRNA synthetases class I (I, L, M and V) CDO28_RS06605 PF08264 Anticodon-binding domain of tRNA CDO28_RS06610 PF01687 Riboflavin kinase CDO28_RS06610 PF06574 FAD synthetase CDO28_RS06620 PF09828 Chromate resistance exported protein CDO28_RS06625 PF00166 Chaperonin 10 Kd subunit CDO28_RS06630 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS06640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS06640 PF14759 Reductase C-terminal CDO28_RS06645 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS06645 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS06650 PF01634 ATP phosphoribosyltransferase CDO28_RS06655 PF13393 Histidyl-tRNA synthetase CDO28_RS06660 PF13393 Histidyl-tRNA synthetase CDO28_RS06660 PF03129 Anticodon binding domain CDO28_RS06675 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CDO28_RS06680 PF03352 Methyladenine glycosylase CDO28_RS06685 PF03734 L,D-transpeptidase catalytic domain CDO28_RS06685 PF17969 L,D-transpeptidase C-terminal domain CDO28_RS06690 PF17969 L,D-transpeptidase C-terminal domain CDO28_RS06690 PF01476 LysM domain CDO28_RS06690 PF03734 L,D-transpeptidase catalytic domain CDO28_RS06695 PF02754 Cysteine-rich domain CDO28_RS06695 PF13183 4Fe-4S dicluster domain CDO28_RS06700 PF01565 FAD binding domain CDO28_RS06705 PF01565 FAD binding domain CDO28_RS06705 PF02913 FAD linked oxidases, C-terminal domain CDO28_RS06710 PF03466 LysR substrate binding domain CDO28_RS06710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS06720 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS06730 PF01384 Phosphate transporter family CDO28_RS06735 PF04452 RNA methyltransferase CDO28_RS06740 PF04107 Glutamate-cysteine ligase family 2(GCS2) CDO28_RS06765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS06765 PF03466 LysR substrate binding domain CDO28_RS06770 PF06628 Catalase-related immune-responsive CDO28_RS06770 PF00199 Catalase CDO28_RS06775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS06775 PF03466 LysR substrate binding domain CDO28_RS06780 PF01738 Dienelactone hydrolase family CDO28_RS06790 PF00478 IMP dehydrogenase / GMP reductase domain CDO28_RS06790 PF00571 CBS domain CDO28_RS06800 PF07690 Major Facilitator Superfamily CDO28_RS06810 PF01728 FtsJ-like methyltransferase CDO28_RS06815 PF02541 Ppx/GppA phosphatase family CDO28_RS06835 PF02417 Chromate transporter CDO28_RS06890 PF02308 MgtC family CDO28_RS06900 PF01266 FAD dependent oxidoreductase CDO28_RS06925 PF00072 Response regulator receiver domain CDO28_RS06940 PF01042 Endoribonuclease L-PSP CDO28_RS06945 PF00005 ABC transporter CDO28_RS06945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS06950 PF00005 ABC transporter CDO28_RS06950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS06955 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS06955 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS06960 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS06965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS06970 PF02082 Transcriptional regulator CDO28_RS06975 PF13416 Bacterial extracellular solute-binding protein CDO28_RS06985 PF05987 Bacterial protein of unknown function (DUF898) CDO28_RS06990 PF00171 Aldehyde dehydrogenase family CDO28_RS07000 PF04030 D-arabinono-1,4-lactone oxidase CDO28_RS07000 PF01565 FAD binding domain CDO28_RS07020 PF13188 PAS domain CDO28_RS07020 PF00989 PAS fold CDO28_RS07020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS07020 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS07025 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07030 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS07030 PF00501 AMP-binding enzyme CDO28_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07045 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07050 PF08402 TOBE domain CDO28_RS07050 PF00005 ABC transporter CDO28_RS07055 PF13416 Bacterial extracellular solute-binding protein CDO28_RS07060 PF06114 IrrE N-terminal-like domain CDO28_RS07060 PF01381 Helix-turn-helix CDO28_RS07060 PF09856 Predicted transcriptional regulator (DUF2083) CDO28_RS07065 PF00463 Isocitrate lyase family CDO28_RS07085 PF00672 HAMP domain CDO28_RS07085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS07100 PF00120 Glutamine synthetase, catalytic domain CDO28_RS07105 PF01266 FAD dependent oxidoreductase CDO28_RS07110 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDO28_RS07110 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDO28_RS07115 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CDO28_RS07120 PF00920 Dehydratase family CDO28_RS07125 PF01609 Transposase DDE domain CDO28_RS07140 PF03459 TOBE domain CDO28_RS07140 PF17912 MalK OB fold domain CDO28_RS07140 PF00005 ABC transporter CDO28_RS07145 PF00128 Alpha amylase, catalytic domain CDO28_RS07150 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07155 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07160 PF01547 Bacterial extracellular solute-binding protein CDO28_RS07165 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS07170 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDO28_RS07170 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDO28_RS07200 PF01311 Bacterial export proteins, family 1 CDO28_RS07205 PF00771 FHIPEP family CDO28_RS07210 PF01313 Bacterial export proteins, family 3 CDO28_RS07215 PF03963 Flagellar hook capping protein - N-terminal region CDO28_RS07220 PF07378 Flagellar protein FlbT CDO28_RS07240 PF00460 Flagella basal body rod protein CDO28_RS07240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO28_RS07240 PF07559 Flagellar basal body protein FlaE CDO28_RS07245 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS07255 PF02120 Flagellar hook-length control protein FliK CDO28_RS07265 PF00691 OmpA family CDO28_RS07265 PF13677 Membrane MotB of proton-channel complex MotA/MotB CDO28_RS07275 PF00669 Bacterial flagellin N-terminal helical region CDO28_RS07275 PF00700 Bacterial flagellin C-terminal helical region CDO28_RS07280 PF00700 Bacterial flagellin C-terminal helical region CDO28_RS07280 PF00669 Bacterial flagellin N-terminal helical region CDO28_RS07285 PF00669 Bacterial flagellin N-terminal helical region CDO28_RS07285 PF00700 Bacterial flagellin C-terminal helical region CDO28_RS07290 PF00669 Bacterial flagellin N-terminal helical region CDO28_RS07290 PF00700 Bacterial flagellin C-terminal helical region CDO28_RS07295 PF00813 FliP family CDO28_RS07305 PF02107 Flagellar L-ring protein CDO28_RS07315 PF02119 Flagellar P-ring protein CDO28_RS07320 PF13144 Chaperone for flagella basal body P-ring formation CDO28_RS07325 PF00460 Flagella basal body rod protein CDO28_RS07325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO28_RS07330 PF02049 Flagellar hook-basal body complex protein FliE CDO28_RS07335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO28_RS07335 PF00460 Flagella basal body rod protein CDO28_RS07340 PF00460 Flagella basal body rod protein CDO28_RS07350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO28_RS07350 PF18269 T3SS EscN ATPase C-terminal domain CDO28_RS07355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CDO28_RS07355 PF00460 Flagella basal body rod protein CDO28_RS07365 PF01618 MotA/TolQ/ExbB proton channel family CDO28_RS07370 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDO28_RS07375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CDO28_RS07380 PF01706 FliG C-terminal domain CDO28_RS07380 PF14841 FliG middle domain CDO28_RS07380 PF14842 FliG N-terminal domain CDO28_RS07385 PF01312 FlhB HrpN YscU SpaS Family CDO28_RS07400 PF03472 Autoinducer binding domain CDO28_RS07400 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS07405 PF08345 Flagellar M-ring protein C-terminal CDO28_RS07405 PF01514 Secretory protein of YscJ/FliF family CDO28_RS07410 PF01609 Transposase DDE domain CDO28_RS07410 PF13808 DDE_Tnp_1-associated CDO28_RS07430 PF03975 CheD chemotactic sensory transduction CDO28_RS07435 PF00072 Response regulator receiver domain CDO28_RS07440 PF01339 CheB methylesterase CDO28_RS07440 PF00072 Response regulator receiver domain CDO28_RS07445 PF01739 CheR methyltransferase, SAM binding domain CDO28_RS07445 PF03705 CheR methyltransferase, all-alpha domain CDO28_RS07450 PF01584 CheW-like domain CDO28_RS07455 PF01584 CheW-like domain CDO28_RS07455 PF01627 Hpt domain CDO28_RS07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS07455 PF02895 Signal transducing histidine kinase, homodimeric domain CDO28_RS07460 PF00072 Response regulator receiver domain CDO28_RS07470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS07480 PF05336 L-rhamnose mutarotase CDO28_RS07485 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS07490 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS07495 PF00005 ABC transporter CDO28_RS07500 PF13407 Periplasmic binding protein domain CDO28_RS07505 PF08220 DeoR-like helix-turn-helix domain CDO28_RS07505 PF00455 DeoR C terminal sensor domain CDO28_RS07510 PF00596 Class II Aldolase and Adducin N-terminal domain CDO28_RS07515 PF01261 Xylose isomerase-like TIM barrel CDO28_RS07530 PF04073 Aminoacyl-tRNA editing domain CDO28_RS07580 PF03884 DNA gyrase inhibitor YacG CDO28_RS07585 PF02545 Maf-like protein CDO28_RS07590 PF01176 Translation initiation factor 1A / IF-1 CDO28_RS07600 PF06793 Uncharacterised protein family (UPF0262) CDO28_RS07605 PF00815 Histidinol dehydrogenase CDO28_RS07615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO28_RS07630 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS07630 PF00072 Response regulator receiver domain CDO28_RS07645 PF07731 Multicopper oxidase CDO28_RS07645 PF00394 Multicopper oxidase CDO28_RS07645 PF07732 Multicopper oxidase CDO28_RS07675 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDO28_RS07675 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDO28_RS07680 PF00857 Isochorismatase family CDO28_RS07690 PF00698 Acyl transferase domain CDO28_RS07690 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS07690 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS07690 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS07690 PF08659 KR domain CDO28_RS07690 PF14765 Polyketide synthase dehydratase CDO28_RS07690 PF00550 Phosphopantetheine attachment site CDO28_RS07690 PF16197 Ketoacyl-synthetase C-terminal extension CDO28_RS07690 PF08990 Erythronolide synthase docking CDO28_RS07695 PF00155 Aminotransferase class I and II CDO28_RS07705 PF00884 Sulfatase CDO28_RS07710 PF05159 Capsule polysaccharide biosynthesis protein CDO28_RS07715 PF00571 CBS domain CDO28_RS07715 PF01380 SIS domain CDO28_RS07720 PF02082 Transcriptional regulator CDO28_RS07730 PF02355 Protein export membrane protein CDO28_RS07730 PF07549 SecD/SecF GG Motif CDO28_RS07740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS07740 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS07740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS07745 PF00155 Aminotransferase class I and II CDO28_RS07750 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS07750 PF13977 BetI-type transcriptional repressor, C-terminal CDO28_RS07755 PF00005 ABC transporter CDO28_RS07760 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS07765 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07770 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS07775 PF07687 Peptidase dimerisation domain CDO28_RS07775 PF01546 Peptidase family M20/M25/M40 CDO28_RS07780 PF01654 Cytochrome bd terminal oxidase subunit I CDO28_RS07785 PF02322 Cytochrome bd terminal oxidase subunit II CDO28_RS07795 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS07800 PF00155 Aminotransferase class I and II CDO28_RS07805 PF01741 Large-conductance mechanosensitive channel, MscL CDO28_RS07810 PF01627 Hpt domain CDO28_RS07810 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS07810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO28_RS07810 PF00072 Response regulator receiver domain CDO28_RS07810 PF00672 HAMP domain CDO28_RS07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS07815 PF00072 Response regulator receiver domain CDO28_RS07815 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS07830 PF01180 Dihydroorotate dehydrogenase CDO28_RS07835 PF01554 MatE CDO28_RS07860 PF02627 Carboxymuconolactone decarboxylase family CDO28_RS07865 PF02082 Transcriptional regulator CDO28_RS07870 PF00271 Helicase conserved C-terminal domain CDO28_RS07870 PF08494 DEAD/H associated CDO28_RS07870 PF00270 DEAD/DEAH box helicase CDO28_RS07895 PF01925 Sulfite exporter TauE/SafE CDO28_RS07905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS07905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS07905 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDO28_RS07905 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS07910 PF02803 Thiolase, C-terminal domain CDO28_RS07910 PF00108 Thiolase, N-terminal domain CDO28_RS07915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO28_RS07915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO28_RS07915 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS07925 PF01638 HxlR-like helix-turn-helix CDO28_RS07930 PF01699 Sodium/calcium exchanger protein CDO28_RS07935 PF00717 Peptidase S24-like CDO28_RS07935 PF01726 LexA DNA binding domain CDO28_RS07955 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS07965 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CDO28_RS07970 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS07975 PF01066 CDP-alcohol phosphatidyltransferase CDO28_RS07980 PF04379 ApaG domain CDO28_RS07985 PF01430 Hsp33 protein CDO28_RS07990 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDO28_RS07990 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDO28_RS07995 PF00202 Aminotransferase class-III CDO28_RS08005 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS08005 PF00072 Response regulator receiver domain CDO28_RS08010 PF01895 PhoU domain CDO28_RS08015 PF00005 ABC transporter CDO28_RS08020 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS08025 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS08035 PF16736 Single Cache-like CDO28_RS08035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS08035 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS08035 PF00989 PAS fold CDO28_RS08040 PF03976 Polyphosphate kinase 2 (PPK2) CDO28_RS08080 PF01594 AI-2E family transporter CDO28_RS08085 PF07690 Major Facilitator Superfamily CDO28_RS08090 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS08090 PF00501 AMP-binding enzyme CDO28_RS08095 PF00342 Phosphoglucose isomerase CDO28_RS08100 PF00294 pfkB family carbohydrate kinase CDO28_RS08105 PF00156 Phosphoribosyl transferase domain CDO28_RS08110 PF01979 Amidohydrolase family CDO28_RS08115 PF00485 Phosphoribulokinase / Uridine kinase family CDO28_RS08120 PF00005 ABC transporter CDO28_RS08125 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS08130 PF13407 Periplasmic binding protein domain CDO28_RS08145 PF07681 DoxX CDO28_RS08155 PF02743 Cache domain CDO28_RS08155 PF00672 HAMP domain CDO28_RS08155 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS08185 PF00171 Aldehyde dehydrogenase family CDO28_RS08185 PF01619 Proline dehydrogenase CDO28_RS08185 PF14850 DNA-binding domain of Proline dehydrogenase CDO28_RS08185 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDO28_RS08190 PF01205 Uncharacterized protein family UPF0029 CDO28_RS08195 PF00248 Aldo/keto reductase family CDO28_RS08225 PF05658 Head domain of trimeric autotransporter adhesin CDO28_RS08225 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO28_RS08225 PF03895 YadA-like membrane anchor domain CDO28_RS08230 PF05658 Head domain of trimeric autotransporter adhesin CDO28_RS08230 PF13018 Extended Signal Peptide of Type V secretion system CDO28_RS08230 PF03895 YadA-like membrane anchor domain CDO28_RS08230 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO28_RS08250 PF01609 Transposase DDE domain CDO28_RS08250 PF13808 DDE_Tnp_1-associated CDO28_RS08255 PF01070 FMN-dependent dehydrogenase CDO28_RS08270 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS08270 PF02909 Tetracyclin repressor-like, C-terminal domain CDO28_RS08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS08285 PF00672 HAMP domain CDO28_RS08285 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS08285 PF13426 PAS domain CDO28_RS08295 PF00403 Heavy-metal-associated domain CDO28_RS08295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS08295 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS08305 PF02203 Tar ligand binding domain homologue CDO28_RS08305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS08305 PF00672 HAMP domain CDO28_RS08310 PF00468 Ribosomal protein L34 CDO28_RS08315 PF00825 Ribonuclease P CDO28_RS08320 PF14849 YidC periplasmic domain CDO28_RS08320 PF02096 60Kd inner membrane protein CDO28_RS08330 PF01926 50S ribosome-binding GTPase CDO28_RS08340 PF01641 SelR domain CDO28_RS08350 PF00696 Amino acid kinase family CDO28_RS08360 PF12833 Helix-turn-helix domain CDO28_RS08360 PF02805 Metal binding domain of Ada CDO28_RS08360 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO28_RS08360 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO28_RS08380 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS08380 PF14602 Hexapeptide repeat of succinyl-transferase CDO28_RS08380 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDO28_RS08390 PF00271 Helicase conserved C-terminal domain CDO28_RS08390 PF03880 DbpA RNA binding domain CDO28_RS08390 PF00270 DEAD/DEAH box helicase CDO28_RS08400 PF03466 LysR substrate binding domain CDO28_RS08400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS08405 PF07859 alpha/beta hydrolase fold CDO28_RS08410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS08415 PF00873 AcrB/AcrD/AcrF family CDO28_RS08420 PF01546 Peptidase family M20/M25/M40 CDO28_RS08420 PF07687 Peptidase dimerisation domain CDO28_RS08435 PF01416 tRNA pseudouridine synthase CDO28_RS08440 PF02911 Formyl transferase, C-terminal domain CDO28_RS08440 PF00551 Formyl transferase CDO28_RS08445 PF01327 Polypeptide deformylase CDO28_RS08455 PF00294 pfkB family carbohydrate kinase CDO28_RS08460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS08460 PF00672 HAMP domain CDO28_RS08465 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO28_RS08470 PF00011 Hsp20/alpha crystallin family CDO28_RS08480 PF02390 Putative methyltransferase CDO28_RS08485 PF02772 S-adenosylmethionine synthetase, central domain CDO28_RS08485 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDO28_RS08485 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDO28_RS08490 PF01381 Helix-turn-helix CDO28_RS08495 PF00795 Carbon-nitrogen hydrolase CDO28_RS08500 PF00571 CBS domain CDO28_RS08500 PF03471 Transporter associated domain CDO28_RS08505 PF02130 Uncharacterized protein family UPF0054 CDO28_RS08510 PF02562 PhoH-like protein CDO28_RS08515 PF00919 Uncharacterized protein family UPF0004 CDO28_RS08515 PF01938 TRAM domain CDO28_RS08515 PF04055 Radical SAM superfamily CDO28_RS08520 PF01553 Acyltransferase CDO28_RS08530 PF00814 Glycoprotease family CDO28_RS08535 PF01106 NifU-like domain CDO28_RS08545 PF00579 tRNA synthetases class I (W and Y) CDO28_RS08555 PF03023 Lipid II flippase MurJ CDO28_RS08560 PF08335 GlnD PII-uridylyltransferase CDO28_RS08560 PF01842 ACT domain CDO28_RS08560 PF01966 HD domain CDO28_RS08560 PF01909 Nucleotidyltransferase domain CDO28_RS08565 PF00488 MutS domain V CDO28_RS08565 PF05190 MutS family domain IV CDO28_RS08565 PF01624 MutS domain I CDO28_RS08565 PF05192 MutS domain III CDO28_RS08565 PF05188 MutS domain II CDO28_RS08570 PF00390 Malic enzyme, N-terminal domain CDO28_RS08570 PF03949 Malic enzyme, NAD binding domain CDO28_RS08570 PF01515 Phosphate acetyl/butaryl transferase CDO28_RS08580 PF00672 HAMP domain CDO28_RS08580 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO28_RS08580 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS08580 PF01627 Hpt domain CDO28_RS08580 PF00072 Response regulator receiver domain CDO28_RS08580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS08585 PF01252 Signal peptidase (SPase) II CDO28_RS08590 PF00588 SpoU rRNA Methylase family CDO28_RS08590 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDO28_RS08595 PF10672 S-adenosylmethionine-dependent methyltransferase CDO28_RS08595 PF01170 Putative RNA methylase family UPF0020 CDO28_RS08595 PF02926 THUMP domain CDO28_RS08610 PF00216 Bacterial DNA-binding protein CDO28_RS08615 PF01343 Peptidase family S49 CDO28_RS08625 PF03968 OstA-like protein CDO28_RS08630 PF00005 ABC transporter CDO28_RS08635 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO28_RS08635 PF04552 Sigma-54, DNA binding domain CDO28_RS08635 PF04963 Sigma-54 factor, core binding domain CDO28_RS08640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDO28_RS08640 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CDO28_RS08645 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDO28_RS08655 PF01025 GrpE CDO28_RS08660 PF01628 HrcA protein C terminal domain CDO28_RS08665 PF03725 3' exoribonuclease family, domain 2 CDO28_RS08665 PF01138 3' exoribonuclease family, domain 1 CDO28_RS08675 PF01725 Ham1 family CDO28_RS08680 PF06969 HemN C-terminal domain CDO28_RS08680 PF04055 Radical SAM superfamily CDO28_RS08695 PF04542 Sigma-70 region 2 CDO28_RS08695 PF08281 Sigma-70, region 4 CDO28_RS08700 PF03795 YCII-related domain CDO28_RS08705 PF08299 Bacterial dnaA protein helix-turn-helix CDO28_RS08705 PF00308 Bacterial dnaA protein CDO28_RS08705 PF11638 DnaA N-terminal domain CDO28_RS08715 PF01649 Ribosomal protein S20 CDO28_RS08720 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS08725 PF06827 Zinc finger found in FPG and IleRS CDO28_RS08725 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDO28_RS08725 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDO28_RS08730 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS08735 PF03109 ABC1 family CDO28_RS08765 PF04127 DNA / pantothenate metabolism flavoprotein CDO28_RS08765 PF02441 Flavoprotein CDO28_RS08775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS08775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS08790 PF00294 pfkB family carbohydrate kinase CDO28_RS08795 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS08795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS08795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS08800 PF01261 Xylose isomerase-like TIM barrel CDO28_RS08805 PF04962 KduI/IolB family CDO28_RS08815 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS08820 PF12833 Helix-turn-helix domain CDO28_RS08830 PF03144 Elongation factor Tu domain 2 CDO28_RS08830 PF00009 Elongation factor Tu GTP binding domain CDO28_RS08830 PF16658 Class II release factor RF3, C-terminal domain CDO28_RS08835 PF00692 dUTPase CDO28_RS08840 PF01037 Lrp/AsnC ligand binding domain CDO28_RS08845 PF00892 EamA-like transporter family CDO28_RS08850 PF01810 LysE type translocator CDO28_RS08855 PF01810 LysE type translocator CDO28_RS08860 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS08865 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDO28_RS08865 PF01078 Magnesium chelatase, subunit ChlI CDO28_RS08870 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDO28_RS08870 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDO28_RS08875 PF02021 Uncharacterised protein family UPF0102 CDO28_RS08880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS08885 PF02768 DNA polymerase III beta subunit, C-terminal domain CDO28_RS08885 PF02767 DNA polymerase III beta subunit, central domain CDO28_RS08885 PF00712 DNA polymerase III beta subunit, N-terminal domain CDO28_RS08890 PF13649 Methyltransferase domain CDO28_RS08900 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO28_RS08910 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS08920 PF02673 Bacitracin resistance protein BacA CDO28_RS08925 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS08925 PF13417 Glutathione S-transferase, N-terminal domain CDO28_RS08930 PF08331 Domain of unknown function (DUF1730) CDO28_RS08940 PF03330 Lytic transglycolase CDO28_RS08945 PF01189 16S rRNA methyltransferase RsmB/F CDO28_RS08945 PF01029 NusB family CDO28_RS08965 PF01544 CorA-like Mg2+ transporter protein CDO28_RS08975 PF00583 Acetyltransferase (GNAT) family CDO28_RS08990 PF02540 NAD synthase CDO28_RS08990 PF00958 GMP synthase C terminal domain CDO28_RS08990 PF00117 Glutamine amidotransferase class-I CDO28_RS09000 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CDO28_RS09025 PF00155 Aminotransferase class I and II CDO28_RS09030 PF03960 ArsC family CDO28_RS09035 PF04073 Aminoacyl-tRNA editing domain CDO28_RS09045 PF14497 Glutathione S-transferase, C-terminal domain CDO28_RS09045 PF13417 Glutathione S-transferase, N-terminal domain CDO28_RS09050 PF02073 Thermophilic metalloprotease (M29) CDO28_RS09055 PF00892 EamA-like transporter family CDO28_RS09060 PF01047 MarR family CDO28_RS09065 PF02525 Flavodoxin-like fold CDO28_RS09070 PF13742 OB-fold nucleic acid binding domain CDO28_RS09070 PF02601 Exonuclease VII, large subunit CDO28_RS09085 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS09085 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS09090 PF00248 Aldo/keto reductase family CDO28_RS09110 PF03466 LysR substrate binding domain CDO28_RS09110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS09115 PF00248 Aldo/keto reductase family CDO28_RS09125 PF03483 B3/4 domain CDO28_RS09125 PF03484 tRNA synthetase B5 domain CDO28_RS09125 PF03147 Ferredoxin-fold anticodon binding domain CDO28_RS09125 PF01588 Putative tRNA binding domain CDO28_RS09125 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDO28_RS09130 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDO28_RS09130 PF01409 tRNA synthetases class II core domain (F) CDO28_RS09135 PF00453 Ribosomal protein L20 CDO28_RS09140 PF01632 Ribosomal protein L35 CDO28_RS09145 PF05198 Translation initiation factor IF-3, N-terminal domain CDO28_RS09145 PF00707 Translation initiation factor IF-3, C-terminal domain CDO28_RS09170 PF01132 Elongation factor P (EF-P) OB domain CDO28_RS09170 PF08207 Elongation factor P (EF-P) KOW-like domain CDO28_RS09170 PF09285 Elongation factor P, C-terminal CDO28_RS09175 PF00152 tRNA synthetases class II (D, K and N) CDO28_RS09180 PF04055 Radical SAM superfamily CDO28_RS09180 PF12544 Lysine-2,3-aminomutase CDO28_RS09185 PF00691 OmpA family CDO28_RS09185 PF13488 Glycine zipper CDO28_RS09190 PF06055 Exopolysaccharide synthesis, ExoD CDO28_RS09205 PF07690 Major Facilitator Superfamily CDO28_RS09210 PF06421 GTP-binding protein LepA C-terminus CDO28_RS09210 PF00679 Elongation factor G C-terminus CDO28_RS09210 PF00009 Elongation factor Tu GTP binding domain CDO28_RS09210 PF03144 Elongation factor Tu domain 2 CDO28_RS09220 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO28_RS09220 PF14760 Rnk N-terminus CDO28_RS09240 PF01541 GIY-YIG catalytic domain CDO28_RS09255 PF00665 Integrase core domain CDO28_RS09260 PF00570 HRDC domain CDO28_RS09260 PF01612 3'-5' exonuclease CDO28_RS09270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS09270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS09275 PF00672 HAMP domain CDO28_RS09275 PF02743 Cache domain CDO28_RS09275 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS09305 PF00575 S1 RNA binding domain CDO28_RS09310 PF02224 Cytidylate kinase CDO28_RS09315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDO28_RS09335 PF03458 UPF0126 domain CDO28_RS09345 PF07977 FabA-like domain CDO28_RS09350 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS09350 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS09360 PF08468 Methyltransferase small domain N-terminal CDO28_RS09360 PF05175 Methyltransferase small domain CDO28_RS09365 PF00013 KH domain CDO28_RS09365 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDO28_RS09365 PF00575 S1 RNA binding domain CDO28_RS09365 PF03725 3' exoribonuclease family, domain 2 CDO28_RS09365 PF01138 3' exoribonuclease family, domain 1 CDO28_RS09370 PF00312 Ribosomal protein S15 CDO28_RS09375 PF07536 HWE histidine kinase CDO28_RS09375 PF08447 PAS fold CDO28_RS09375 PF13426 PAS domain CDO28_RS09380 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDO28_RS09380 PF09157 Pseudouridine synthase II TruB, C-terminal CDO28_RS09380 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDO28_RS09385 PF02033 Ribosome-binding factor A CDO28_RS09390 PF00009 Elongation factor Tu GTP binding domain CDO28_RS09390 PF11987 Translation-initiation factor 2 CDO28_RS09390 PF04760 Translation initiation factor IF-2, N-terminal region CDO28_RS09390 PF08364 Bacterial translation initiation factor IF-2 associated region CDO28_RS09400 PF08529 NusA N-terminal domain CDO28_RS09400 PF00575 S1 RNA binding domain CDO28_RS09400 PF13184 NusA-like KH domain CDO28_RS09405 PF02576 RimP N-terminal domain CDO28_RS09405 PF17384 RimP C-terminal SH3 domain CDO28_RS09410 PF05977 Transmembrane secretion effector CDO28_RS09415 PF13406 Transglycosylase SLT domain CDO28_RS09420 PF13662 Toprim domain CDO28_RS09420 PF02132 RecR protein CDO28_RS09425 PF01810 LysE type translocator CDO28_RS09430 PF02575 YbaB/EbfC DNA-binding family CDO28_RS09435 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDO28_RS09435 PF12170 DNA polymerase III tau subunit V interacting with alpha CDO28_RS09435 PF12169 DNA polymerase III subunits gamma and tau domain III CDO28_RS09450 PF09297 NADH pyrophosphatase zinc ribbon domain CDO28_RS09450 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CDO28_RS09450 PF00293 NUDIX domain CDO28_RS09455 PF13280 WYL domain CDO28_RS09455 PF08279 HTH domain CDO28_RS09470 PF01817 Chorismate mutase type II CDO28_RS09470 PF00800 Prephenate dehydratase CDO28_RS09475 PF02348 Cytidylyltransferase CDO28_RS09480 PF00034 Cytochrome c CDO28_RS09485 PF01063 Amino-transferase class IV CDO28_RS09500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS09500 PF03466 LysR substrate binding domain CDO28_RS09505 PF07690 Major Facilitator Superfamily CDO28_RS09510 PF01494 FAD binding domain CDO28_RS09515 PF00593 TonB dependent receptor CDO28_RS09515 PF07715 TonB-dependent Receptor Plug Domain CDO28_RS09520 PF07690 Major Facilitator Superfamily CDO28_RS09525 PF12833 Helix-turn-helix domain CDO28_RS09525 PF02311 AraC-like ligand binding domain CDO28_RS09550 PF01625 Peptide methionine sulfoxide reductase CDO28_RS09555 PF02608 ABC transporter substrate-binding protein PnrA-like CDO28_RS09560 PF04102 SlyX CDO28_RS09570 PF01425 Amidase CDO28_RS09575 PF00480 ROK family CDO28_RS09580 PF03932 CutC family CDO28_RS09590 PF01979 Amidohydrolase family CDO28_RS09595 PF01380 SIS domain CDO28_RS09600 PF07702 UTRA domain CDO28_RS09600 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS09605 PF01869 BadF/BadG/BcrA/BcrD ATPase family CDO28_RS09610 PF13580 SIS domain CDO28_RS09620 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS09625 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS09630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS09630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS09635 PF08402 TOBE domain CDO28_RS09635 PF00005 ABC transporter CDO28_RS09640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS09640 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS09645 PF00873 AcrB/AcrD/AcrF family CDO28_RS09650 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS09650 PF08361 MAATS-type transcriptional repressor, C-terminal region CDO28_RS09660 PF00899 ThiF family CDO28_RS09660 PF00581 Rhodanese-like domain CDO28_RS09665 PF02463 RecF/RecN/SMC N terminal domain CDO28_RS09670 PF01865 Protein of unknown function DUF47 CDO28_RS09675 PF01384 Phosphate transporter family CDO28_RS09690 PF00684 DnaJ central domain CDO28_RS09690 PF01556 DnaJ C terminal domain CDO28_RS09690 PF00226 DnaJ domain CDO28_RS09695 PF00012 Hsp70 protein CDO28_RS09700 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS09700 PF00912 Transglycosylase CDO28_RS09720 PF07687 Peptidase dimerisation domain CDO28_RS09720 PF01546 Peptidase family M20/M25/M40 CDO28_RS09730 PF01367 5'-3' exonuclease, C-terminal SAM fold CDO28_RS09730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDO28_RS09730 PF01612 3'-5' exonuclease CDO28_RS09730 PF00476 DNA polymerase family A CDO28_RS09735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS09735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS09750 PF00294 pfkB family carbohydrate kinase CDO28_RS09760 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS09760 PF08361 MAATS-type transcriptional repressor, C-terminal region CDO28_RS09765 PF00633 Helix-hairpin-helix motif CDO28_RS09765 PF00730 HhH-GPD superfamily base excision DNA repair protein CDO28_RS09765 PF10576 Iron-sulfur binding domain of endonuclease III CDO28_RS09775 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO28_RS09775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO28_RS09780 PF00300 Histidine phosphatase superfamily (branch 1) CDO28_RS09785 PF05173 Dihydrodipicolinate reductase, C-terminus CDO28_RS09785 PF01113 Dihydrodipicolinate reductase, N-terminus CDO28_RS09790 PF00664 ABC transporter transmembrane region CDO28_RS09790 PF00005 ABC transporter CDO28_RS09795 PF02685 Glucokinase CDO28_RS09800 PF02142 MGS-like domain CDO28_RS09805 PF03411 Penicillin-insensitive murein endopeptidase CDO28_RS09810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS09815 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS09820 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS09820 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS09825 PF00005 ABC transporter CDO28_RS09825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS09830 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS09835 PF00877 NlpC/P60 family CDO28_RS09845 PF00883 Cytosol aminopeptidase family, catalytic domain CDO28_RS09845 PF02789 Cytosol aminopeptidase family, N-terminal domain CDO28_RS09855 PF01609 Transposase DDE domain CDO28_RS09870 PF00437 Type II/IV secretion system protein CDO28_RS09885 PF13629 Pilus formation protein N terminal region CDO28_RS09885 PF00263 Bacterial type II and III secretion system protein CDO28_RS09885 PF04972 BON domain CDO28_RS09920 PF01676 Metalloenzyme superfamily CDO28_RS09925 PF00962 Adenosine/AMP deaminase CDO28_RS09935 PF02885 Glycosyl transferase family, helical bundle domain CDO28_RS09935 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CDO28_RS09935 PF00591 Glycosyl transferase family, a/b domain CDO28_RS09940 PF01048 Phosphorylase superfamily CDO28_RS09945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDO28_RS09950 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS09955 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS09960 PF00005 ABC transporter CDO28_RS09965 PF01609 Transposase DDE domain CDO28_RS09965 PF13808 DDE_Tnp_1-associated CDO28_RS09980 PF00403 Heavy-metal-associated domain CDO28_RS09985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS09985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS10005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS10005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS10010 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS10010 PF17938 Tetracyclin repressor-like, C-terminal domain CDO28_RS10015 PF13416 Bacterial extracellular solute-binding protein CDO28_RS10020 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS10025 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS10030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS10030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS10035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS10035 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS10040 PF00005 ABC transporter CDO28_RS10040 PF17912 MalK OB fold domain CDO28_RS10055 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS10055 PF07729 FCD domain CDO28_RS10060 PF00920 Dehydratase family CDO28_RS10065 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS10070 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CDO28_RS10070 PF09364 XFP N-terminal domain CDO28_RS10070 PF09363 XFP C-terminal domain CDO28_RS10080 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS10080 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS10095 PF00970 Oxidoreductase FAD-binding domain CDO28_RS10095 PF00175 Oxidoreductase NAD-binding domain CDO28_RS10095 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS10105 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS10105 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS10110 PF00551 Formyl transferase CDO28_RS10135 PF13520 Amino acid permease CDO28_RS10150 PF00120 Glutamine synthetase, catalytic domain CDO28_RS10155 PF01645 Conserved region in glutamate synthase CDO28_RS10160 PF01493 GXGXG motif CDO28_RS10170 PF01965 DJ-1/PfpI family CDO28_RS10170 PF12833 Helix-turn-helix domain CDO28_RS10175 PF01266 FAD dependent oxidoreductase CDO28_RS10180 PF04267 Sarcosine oxidase, delta subunit family CDO28_RS10185 PF17806 Sarcosine oxidase A3 domain CDO28_RS10185 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS10185 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS10185 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS10195 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDO28_RS10195 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDO28_RS10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS10215 PF03466 LysR substrate binding domain CDO28_RS10220 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS10225 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDO28_RS10285 PF13416 Bacterial extracellular solute-binding protein CDO28_RS10290 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS10295 PF00005 ABC transporter CDO28_RS10300 PF00270 DEAD/DEAH box helicase CDO28_RS10300 PF08482 ATP-dependent helicase C-terminal CDO28_RS10300 PF04408 Helicase associated domain (HA2) CDO28_RS10300 PF00271 Helicase conserved C-terminal domain CDO28_RS10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS10305 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS10310 PF00072 Response regulator receiver domain CDO28_RS10325 PF01274 Malate synthase CDO28_RS10330 PF05378 Hydantoinase/oxoprolinase N-terminal region CDO28_RS10330 PF01968 Hydantoinase/oxoprolinase CDO28_RS10335 PF00067 Cytochrome P450 CDO28_RS10345 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS10345 PF07724 AAA domain (Cdc48 subfamily) CDO28_RS10345 PF10431 C-terminal, D2-small domain, of ClpB protein CDO28_RS10355 PF00227 Proteasome subunit CDO28_RS10360 PF00475 Imidazoleglycerol-phosphate dehydratase CDO28_RS10370 PF00117 Glutamine amidotransferase class-I CDO28_RS10375 PF00977 Histidine biosynthesis protein CDO28_RS10380 PF00977 Histidine biosynthesis protein CDO28_RS10385 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CDO28_RS10390 PF00485 Phosphoribulokinase / Uridine kinase family CDO28_RS10395 PF13532 2OG-Fe(II) oxygenase superfamily CDO28_RS10400 PF01476 LysM domain CDO28_RS10400 PF04972 BON domain CDO28_RS10405 PF00472 RF-1 domain CDO28_RS10410 PF01293 Phosphoenolpyruvate carboxykinase CDO28_RS10415 PF00072 Response regulator receiver domain CDO28_RS10415 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS10420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS10420 PF13756 Stimulus-sensing domain CDO28_RS10420 PF13755 Sensor N-terminal transmembrane domain CDO28_RS10420 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS10420 PF00672 HAMP domain CDO28_RS10435 PF03610 PTS system fructose IIA component CDO28_RS10435 PF03830 PTS system sorbose subfamily IIB component CDO28_RS10440 PF00381 PTS HPr component phosphorylation site CDO28_RS10445 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDO28_RS10445 PF05221 S-adenosyl-L-homocysteine hydrolase CDO28_RS10450 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS10450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS10455 PF01636 Phosphotransferase enzyme family CDO28_RS10460 PF12804 MobA-like NTP transferase domain CDO28_RS10465 PF12705 PD-(D/E)XK nuclease superfamily CDO28_RS10470 PF13361 UvrD-like helicase C-terminal domain CDO28_RS10470 PF12705 PD-(D/E)XK nuclease superfamily CDO28_RS10470 PF00580 UvrD/REP helicase N-terminal domain CDO28_RS10475 PF00085 Thioredoxin CDO28_RS10480 PF01609 Transposase DDE domain CDO28_RS10485 PF02875 Mur ligase family, glutamate ligase domain CDO28_RS10485 PF08245 Mur ligase middle domain CDO28_RS10490 PF01039 Carboxyl transferase domain CDO28_RS10495 PF00290 Tryptophan synthase alpha chain CDO28_RS10500 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS10505 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDO28_RS10525 PF00107 Zinc-binding dehydrogenase CDO28_RS10525 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS10530 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS10535 PF00005 ABC transporter CDO28_RS10545 PF00248 Aldo/keto reductase family CDO28_RS10550 PF08666 SAF domain CDO28_RS10550 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CDO28_RS10555 PF07729 FCD domain CDO28_RS10555 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS10560 PF03328 HpcH/HpaI aldolase/citrate lyase family CDO28_RS10565 PF00171 Aldehyde dehydrogenase family CDO28_RS10570 PF00881 Nitroreductase family CDO28_RS10575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS10575 PF01751 Toprim domain CDO28_RS10575 PF00986 DNA gyrase B subunit, carboxyl terminus CDO28_RS10575 PF00204 DNA gyrase B CDO28_RS10600 PF04186 FxsA cytoplasmic membrane protein CDO28_RS10605 PF02556 Preprotein translocase subunit SecB CDO28_RS10610 PF00929 Exonuclease CDO28_RS10615 PF01121 Dephospho-CoA kinase CDO28_RS10620 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDO28_RS10620 PF01488 Shikimate / quinate 5-dehydrogenase CDO28_RS10620 PF08501 Shikimate dehydrogenase substrate binding domain CDO28_RS10625 PF02545 Maf-like protein CDO28_RS10630 PF03618 Kinase/pyrophosphorylase CDO28_RS10635 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDO28_RS10640 PF03653 Uncharacterised protein family (UPF0093) CDO28_RS10645 PF07498 Rho termination factor, N-terminal domain CDO28_RS10645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO28_RS10645 PF07497 Rho termination factor, RNA-binding domain CDO28_RS10650 PF10396 GTP-binding protein TrmE N-terminus CDO28_RS10650 PF12631 MnmE helical domain CDO28_RS10650 PF01926 50S ribosome-binding GTPase CDO28_RS10655 PF13932 GidA associated domain CDO28_RS10655 PF01134 Glucose inhibited division protein A CDO28_RS10660 PF02527 rRNA small subunit methyltransferase G CDO28_RS10665 PF13614 AAA domain CDO28_RS10670 PF02195 ParB-like nuclease domain CDO28_RS10670 PF17762 HTH domain found in ParB protein CDO28_RS10685 PF00133 tRNA synthetases class I (I, L, M and V) CDO28_RS10685 PF13603 Leucyl-tRNA synthetase, Domain 2 CDO28_RS10685 PF08264 Anticodon-binding domain of tRNA CDO28_RS10685 PF09334 tRNA synthetases class I (M) CDO28_RS10690 PF01168 Alanine racemase, N-terminal domain CDO28_RS10695 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS10695 PF00501 AMP-binding enzyme CDO28_RS10695 PF16177 Acetyl-coenzyme A synthetase N-terminus CDO28_RS10710 PF16177 Acetyl-coenzyme A synthetase N-terminus CDO28_RS10710 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS10710 PF00501 AMP-binding enzyme CDO28_RS10720 PF01435 Peptidase family M48 CDO28_RS10725 PF01029 NusB family CDO28_RS10725 PF01189 16S rRNA methyltransferase RsmB/F CDO28_RS10735 PF01808 AICARFT/IMPCHase bienzyme CDO28_RS10735 PF02142 MGS-like domain CDO28_RS10750 PF05088 Bacterial NAD-glutamate dehydrogenase CDO28_RS10755 PF08543 Phosphomethylpyrimidine kinase CDO28_RS10760 PF00484 Carbonic anhydrase CDO28_RS10775 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO28_RS10775 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDO28_RS10785 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CDO28_RS10790 PF01850 PIN domain CDO28_RS10795 PF00083 Sugar (and other) transporter CDO28_RS10800 PF01569 PAP2 superfamily CDO28_RS10805 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO28_RS10815 PF01432 Peptidase family M3 CDO28_RS10825 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS10830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS10830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS10835 PF01144 Coenzyme A transferase CDO28_RS10840 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS10845 PF00171 Aldehyde dehydrogenase family CDO28_RS10850 PF01547 Bacterial extracellular solute-binding protein CDO28_RS10855 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS10860 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS10865 PF00005 ABC transporter CDO28_RS10865 PF17912 MalK OB fold domain CDO28_RS10870 PF00732 GMC oxidoreductase CDO28_RS10870 PF05199 GMC oxidoreductase CDO28_RS10880 PF00732 GMC oxidoreductase CDO28_RS10880 PF05199 GMC oxidoreductase CDO28_RS10885 PF13660 Domain of unknown function (DUF4147) CDO28_RS10885 PF05161 MOFRL family CDO28_RS10890 PF00202 Aminotransferase class-III CDO28_RS10900 PF00155 Aminotransferase class I and II CDO28_RS10905 PF00171 Aldehyde dehydrogenase family CDO28_RS10915 PF07063 Domain of unknown function (DUF1338) CDO28_RS10920 PF03466 LysR substrate binding domain CDO28_RS10920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS10930 PF10091 Putative glucoamylase CDO28_RS10930 PF06165 Glycosyltransferase family 36 CDO28_RS10930 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CDO28_RS10945 PF00005 ABC transporter CDO28_RS10945 PF00664 ABC transporter transmembrane region CDO28_RS10955 PF00682 HMGL-like CDO28_RS10955 PF02785 Biotin carboxylase C-terminal domain CDO28_RS10955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS10955 PF00364 Biotin-requiring enzyme CDO28_RS10955 PF00289 Biotin carboxylase, N-terminal domain CDO28_RS10955 PF02436 Conserved carboxylase domain CDO28_RS10960 PF00005 ABC transporter CDO28_RS10965 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS10970 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS10980 PF07690 Major Facilitator Superfamily CDO28_RS10985 PF04551 GcpE protein CDO28_RS10995 PF00155 Aminotransferase class I and II CDO28_RS11000 PF00348 Polyprenyl synthetase CDO28_RS11005 PF00912 Transglycosylase CDO28_RS11010 PF13417 Glutathione S-transferase, N-terminal domain CDO28_RS11010 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS11015 PF01783 Ribosomal L32p protein family CDO28_RS11020 PF07879 PHB/PHA accumulation regulator DNA-binding domain CDO28_RS11020 PF05233 PHB accumulation regulatory domain CDO28_RS11025 PF00108 Thiolase, N-terminal domain CDO28_RS11025 PF02803 Thiolase, C-terminal domain CDO28_RS11045 PF00037 4Fe-4S binding domain CDO28_RS11045 PF11953 Domain of unknown function (DUF3470) CDO28_RS11050 PF02559 CarD-like/TRCF domain CDO28_RS11055 PF00140 Sigma-70 factor, region 1.2 CDO28_RS11055 PF04542 Sigma-70 region 2 CDO28_RS11055 PF04545 Sigma-70, region 4 CDO28_RS11060 PF01435 Peptidase family M48 CDO28_RS11065 PF00005 ABC transporter CDO28_RS11070 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS11075 PF01547 Bacterial extracellular solute-binding protein CDO28_RS11090 PF16326 ABC transporter C-terminal domain CDO28_RS11090 PF00005 ABC transporter CDO28_RS11095 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS11100 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS11105 PF01245 Ribosomal protein L19 CDO28_RS11110 PF01925 Sulfite exporter TauE/SafE CDO28_RS11115 PF01746 tRNA (Guanine-1)-methyltransferase CDO28_RS11120 PF05239 PRC-barrel domain CDO28_RS11120 PF01782 RimM N-terminal domain CDO28_RS11125 PF00886 Ribosomal protein S16 CDO28_RS11130 PF02153 Prephenate dehydrogenase CDO28_RS11130 PF01817 Chorismate mutase type II CDO28_RS11135 PF00448 SRP54-type protein, GTPase domain CDO28_RS11135 PF02978 Signal peptide binding domain CDO28_RS11135 PF02881 SRP54-type protein, helical bundle domain CDO28_RS11140 PF01678 Diaminopimelate epimerase CDO28_RS11145 PF00919 Uncharacterized protein family UPF0004 CDO28_RS11145 PF04055 Radical SAM superfamily CDO28_RS11150 PF00448 SRP54-type protein, GTPase domain CDO28_RS11150 PF02881 SRP54-type protein, helical bundle domain CDO28_RS11155 PF04279 Intracellular septation protein A CDO28_RS11160 PF10755 Protein of unknown function (DUF2585) CDO28_RS11165 PF08534 Redoxin CDO28_RS11175 PF01578 Cytochrome C assembly protein CDO28_RS11180 PF03379 CcmB protein CDO28_RS11185 PF00005 ABC transporter CDO28_RS11190 PF00694 Aconitase C-terminal domain CDO28_RS11190 PF00330 Aconitase family (aconitate hydratase) CDO28_RS11205 PF01022 Bacterial regulatory protein, arsR family CDO28_RS11215 PF00574 Clp protease CDO28_RS11225 PF01027 Inhibitor of apoptosis-promoting Bax1 CDO28_RS11235 PF00005 ABC transporter CDO28_RS11240 PF13472 GDSL-like Lipase/Acylhydrolase family CDO28_RS11245 PF02834 LigT like Phosphoesterase CDO28_RS11250 PF01329 Pterin 4 alpha carbinolamine dehydratase CDO28_RS11260 PF13808 DDE_Tnp_1-associated CDO28_RS11260 PF01609 Transposase DDE domain CDO28_RS11270 PF04055 Radical SAM superfamily CDO28_RS11280 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS11285 PF00005 ABC transporter CDO28_RS11295 PF00764 Arginosuccinate synthase CDO28_RS11300 PF07690 Major Facilitator Superfamily CDO28_RS11305 PF01047 MarR family CDO28_RS11315 PF00330 Aconitase family (aconitate hydratase) CDO28_RS11320 PF00300 Histidine phosphatase superfamily (branch 1) CDO28_RS11330 PF00072 Response regulator receiver domain CDO28_RS11330 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS11345 PF00480 ROK family CDO28_RS11350 PF00480 ROK family CDO28_RS11355 PF00005 ABC transporter CDO28_RS11360 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS11365 PF13407 Periplasmic binding protein domain CDO28_RS11370 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS11370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS11385 PF03548 Outer membrane lipoprotein carrier protein LolA CDO28_RS11390 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDO28_RS11390 PF17854 FtsK alpha domain CDO28_RS11390 PF09397 Ftsk gamma domain CDO28_RS11390 PF01580 FtsK/SpoIIIE family CDO28_RS11395 PF00909 Ammonium Transporter Family CDO28_RS11400 PF00543 Nitrogen regulatory protein P-II CDO28_RS11410 PF01494 FAD binding domain CDO28_RS11420 PF03966 Trm112p-like protein CDO28_RS11425 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS11425 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDO28_RS11425 PF05362 Lon protease (S16) C-terminal proteolytic domain CDO28_RS11430 PF00085 Thioredoxin CDO28_RS11445 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS11445 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO28_RS11450 PF01263 Aldose 1-epimerase CDO28_RS11455 PF04204 Homoserine O-succinyltransferase CDO28_RS11460 PF01042 Endoribonuclease L-PSP CDO28_RS11465 PF00694 Aconitase C-terminal domain CDO28_RS11475 PF03328 HpcH/HpaI aldolase/citrate lyase family CDO28_RS11495 PF01336 OB-fold nucleic acid binding domain CDO28_RS11495 PF14579 Helix-hairpin-helix motif CDO28_RS11495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO28_RS11495 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO28_RS11495 PF02811 PHP domain CDO28_RS11505 PF00210 Ferritin-like domain CDO28_RS11510 PF00293 NUDIX domain CDO28_RS11515 PF04748 Divergent polysaccharide deacetylase CDO28_RS11520 PF03572 Peptidase family S41 CDO28_RS11520 PF13180 PDZ domain CDO28_RS11525 PF01551 Peptidase family M23 CDO28_RS11530 PF02590 Predicted SPOUT methyltransferase CDO28_RS11540 PF01467 Cytidylyltransferase-like CDO28_RS11545 PF00171 Aldehyde dehydrogenase family CDO28_RS11550 PF01472 PUA domain CDO28_RS11550 PF00696 Amino acid kinase family CDO28_RS11555 PF01018 GTP1/OBG CDO28_RS11555 PF01926 50S ribosome-binding GTPase CDO28_RS11560 PF13302 Acetyltransferase (GNAT) domain CDO28_RS11570 PF01016 Ribosomal L27 protein CDO28_RS11575 PF00829 Ribosomal prokaryotic L21 protein CDO28_RS11600 PF01425 Amidase CDO28_RS11605 PF13619 KTSC domain CDO28_RS11615 PF00679 Elongation factor G C-terminus CDO28_RS11615 PF00009 Elongation factor Tu GTP binding domain CDO28_RS11615 PF03144 Elongation factor Tu domain 2 CDO28_RS11630 PF00719 Inorganic pyrophosphatase CDO28_RS11635 PF02325 YGGT family CDO28_RS11645 PF00958 GMP synthase C terminal domain CDO28_RS11645 PF00117 Glutamine amidotransferase class-I CDO28_RS11670 PF03900 Porphobilinogen deaminase, C-terminal domain CDO28_RS11670 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDO28_RS11675 PF00814 Glycoprotease family CDO28_RS11680 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDO28_RS11680 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDO28_RS11705 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDO28_RS11715 PF02910 Fumarate reductase flavoprotein C-term CDO28_RS11715 PF00890 FAD binding domain CDO28_RS11720 PF13085 2Fe-2S iron-sulfur cluster binding domain CDO28_RS11720 PF13237 4Fe-4S dicluster domain CDO28_RS11725 PF01625 Peptide methionine sulfoxide reductase CDO28_RS11740 PF00480 ROK family CDO28_RS11745 PF01547 Bacterial extracellular solute-binding protein CDO28_RS11750 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS11755 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS11760 PF00005 ABC transporter CDO28_RS11760 PF08402 TOBE domain CDO28_RS11765 PF02974 Protease inhibitor Inh CDO28_RS11770 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CDO28_RS11775 PF01381 Helix-turn-helix CDO28_RS11780 PF03969 AFG1-like ATPase CDO28_RS11785 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDO28_RS11785 PF00056 lactate/malate dehydrogenase, NAD binding domain CDO28_RS11790 PF00549 CoA-ligase CDO28_RS11790 PF08442 ATP-grasp domain CDO28_RS11795 PF02629 CoA binding domain CDO28_RS11795 PF00549 CoA-ligase CDO28_RS11800 PF16078 2-oxoglutarate dehydrogenase N-terminus CDO28_RS11800 PF00676 Dehydrogenase E1 component CDO28_RS11800 PF16870 2-oxoglutarate dehydrogenase C-terminal CDO28_RS11800 PF02779 Transketolase, pyrimidine binding domain CDO28_RS11805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO28_RS11805 PF00364 Biotin-requiring enzyme CDO28_RS11805 PF02817 e3 binding domain CDO28_RS11810 PF01810 LysE type translocator CDO28_RS11825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS11825 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS11835 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS11835 PF00589 Phage integrase family CDO28_RS11845 PF02463 RecF/RecN/SMC N terminal domain CDO28_RS11865 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDO28_RS11870 PF00270 DEAD/DEAH box helicase CDO28_RS11870 PF17764 3′ DNA-binding domain (3′BD) CDO28_RS11870 PF18074 Primosomal protein N C-terminal domain CDO28_RS11870 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDO28_RS11880 PF00213 ATP synthase delta (OSCP) subunit CDO28_RS11885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO28_RS11885 PF00306 ATP synthase alpha/beta chain, C terminal domain CDO28_RS11885 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO28_RS11890 PF00231 ATP synthase CDO28_RS11895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDO28_RS11895 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDO28_RS11900 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDO28_RS11905 PF03435 Saccharopine dehydrogenase NADP binding domain CDO28_RS11905 PF16653 Saccharopine dehydrogenase C-terminal domain CDO28_RS11910 PF13404 AsnC-type helix-turn-helix domain CDO28_RS11910 PF01037 Lrp/AsnC ligand binding domain CDO28_RS11920 PF00950 ABC 3 transport family CDO28_RS11925 PF00950 ABC 3 transport family CDO28_RS11930 PF00005 ABC transporter CDO28_RS11935 PF01297 Zinc-uptake complex component A periplasmic CDO28_RS11940 PF01475 Ferric uptake regulator family CDO28_RS11950 PF00860 Permease family CDO28_RS11955 PF00860 Permease family CDO28_RS11970 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS11975 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS11980 PF00005 ABC transporter CDO28_RS11985 PF17912 MalK OB fold domain CDO28_RS11985 PF00005 ABC transporter CDO28_RS11985 PF03459 TOBE domain CDO28_RS11990 PF01266 FAD dependent oxidoreductase CDO28_RS11990 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDO28_RS11995 PF00455 DeoR C terminal sensor domain CDO28_RS11995 PF08220 DeoR-like helix-turn-helix domain CDO28_RS12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS12005 PF03466 LysR substrate binding domain CDO28_RS12015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDO28_RS12015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO28_RS12015 PF00037 4Fe-4S binding domain CDO28_RS12025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS12025 PF00384 Molybdopterin oxidoreductase CDO28_RS12025 PF12838 4Fe-4S dicluster domain CDO28_RS12025 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO28_RS12025 PF01568 Molydopterin dinucleotide binding domain CDO28_RS12030 PF02634 FdhD/NarQ family CDO28_RS12040 PF13426 PAS domain CDO28_RS12040 PF08447 PAS fold CDO28_RS12040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS12045 PF01584 CheW-like domain CDO28_RS12050 PF00491 Arginase family CDO28_RS12065 PF01636 Phosphotransferase enzyme family CDO28_RS12080 PF17243 POTRA domain TamA domain 1 CDO28_RS12080 PF07244 Surface antigen variable number repeat CDO28_RS12080 PF01103 Surface antigen CDO28_RS12085 PF00561 alpha/beta hydrolase fold CDO28_RS12085 PF08386 TAP-like protein CDO28_RS12090 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS12100 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS12100 PF01799 [2Fe-2S] binding domain CDO28_RS12105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS12105 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS12110 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS12110 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS12115 PF00155 Aminotransferase class I and II CDO28_RS12120 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDO28_RS12120 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDO28_RS12120 PF13288 DXP reductoisomerase C-terminal domain CDO28_RS12125 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CDO28_RS12150 PF00480 ROK family CDO28_RS12155 PF03928 Haem-degrading CDO28_RS12165 PF02574 Homocysteine S-methyltransferase CDO28_RS12165 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDO28_RS12165 PF00809 Pterin binding enzyme CDO28_RS12165 PF02607 B12 binding domain CDO28_RS12165 PF02310 B12 binding domain CDO28_RS12170 PF00872 Transposase, Mutator family CDO28_RS12175 PF00732 GMC oxidoreductase CDO28_RS12175 PF05199 GMC oxidoreductase CDO28_RS12180 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS12180 PF11862 Domain of unknown function (DUF3382) CDO28_RS12185 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS12190 PF00005 ABC transporter CDO28_RS12195 PF00005 ABC transporter CDO28_RS12195 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDO28_RS12245 PF00325 Bacterial regulatory proteins, crp family CDO28_RS12245 PF04198 Putative sugar-binding domain CDO28_RS12250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS12255 PF00005 ABC transporter CDO28_RS12255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS12260 PF00005 ABC transporter CDO28_RS12260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS12265 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS12270 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS12270 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS12275 PF03009 Glycerophosphoryl diester phosphodiesterase family CDO28_RS12285 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS12290 PF01266 FAD dependent oxidoreductase CDO28_RS12295 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS12305 PF00005 ABC transporter CDO28_RS12320 PF00294 pfkB family carbohydrate kinase CDO28_RS12330 PF07729 FCD domain CDO28_RS12330 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS12340 PF13188 PAS domain CDO28_RS12340 PF00563 EAL domain CDO28_RS12340 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS12340 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS12365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS12365 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS12370 PF00664 ABC transporter transmembrane region CDO28_RS12370 PF00005 ABC transporter CDO28_RS12385 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS12385 PF00072 Response regulator receiver domain CDO28_RS12390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO28_RS12395 PF01037 Lrp/AsnC ligand binding domain CDO28_RS12405 PF04209 homogentisate 1,2-dioxygenase CDO28_RS12415 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS12415 PF14497 Glutathione S-transferase, C-terminal domain CDO28_RS12420 PF00551 Formyl transferase CDO28_RS12425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS12425 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS12430 PF00364 Biotin-requiring enzyme CDO28_RS12430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO28_RS12430 PF02817 e3 binding domain CDO28_RS12435 PF02780 Transketolase, C-terminal domain CDO28_RS12435 PF02779 Transketolase, pyrimidine binding domain CDO28_RS12440 PF00676 Dehydrogenase E1 component CDO28_RS12440 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal CDO28_RS12445 PF01266 FAD dependent oxidoreductase CDO28_RS12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS12450 PF03459 TOBE domain CDO28_RS12455 PF03459 TOBE domain CDO28_RS12455 PF00005 ABC transporter CDO28_RS12460 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS12475 PF03167 Uracil DNA glycosylase superfamily CDO28_RS12480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS12485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDO28_RS12490 PF02570 Precorrin-8X methylmutase CDO28_RS12495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS12500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS12505 PF02571 Precorrin-6x reductase CbiJ/CobK CDO28_RS12510 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS12515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS12520 PF03466 LysR substrate binding domain CDO28_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS12525 PF02525 Flavodoxin-like fold CDO28_RS12530 PF03334 Na+/H+ antiporter subunit CDO28_RS12535 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDO28_RS12540 PF01899 Na+/H+ ion antiporter subunit CDO28_RS12545 PF00361 Proton-conducting membrane transporter CDO28_RS12550 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO28_RS12555 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDO28_RS12555 PF00361 Proton-conducting membrane transporter CDO28_RS12555 PF13244 Domain of unknown function (DUF4040) CDO28_RS12555 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDO28_RS12560 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS12560 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS12560 PF00563 EAL domain CDO28_RS12565 PF01068 ATP dependent DNA ligase domain CDO28_RS12565 PF04675 DNA ligase N terminus CDO28_RS12565 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS12575 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO28_RS12585 PF01336 OB-fold nucleic acid binding domain CDO28_RS12585 PF00152 tRNA synthetases class II (D, K and N) CDO28_RS12590 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO28_RS12595 PF03471 Transporter associated domain CDO28_RS12595 PF03741 Integral membrane protein TerC family CDO28_RS12600 PF06445 GyrI-like small molecule binding domain CDO28_RS12600 PF12833 Helix-turn-helix domain CDO28_RS12605 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS12610 PF13533 Biotin-lipoyl like CDO28_RS12615 PF07690 Major Facilitator Superfamily CDO28_RS12625 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS12630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS12630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS12635 PF01261 Xylose isomerase-like TIM barrel CDO28_RS12645 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS12645 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS12650 PF00232 Glycosyl hydrolase family 1 CDO28_RS12655 PF09383 NIL domain CDO28_RS12655 PF00005 ABC transporter CDO28_RS12660 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS12665 PF03180 NLPA lipoprotein CDO28_RS12670 PF17773 UPF0176 acylphosphatase like domain CDO28_RS12670 PF00581 Rhodanese-like domain CDO28_RS12680 PF01928 CYTH domain CDO28_RS12685 PF01081 KDPG and KHG aldolase CDO28_RS12715 PF01850 PIN domain CDO28_RS12720 PF03824 High-affinity nickel-transport protein CDO28_RS12730 PF03466 LysR substrate binding domain CDO28_RS12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS12735 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO28_RS12735 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO28_RS12745 PF01810 LysE type translocator CDO28_RS12760 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS12760 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO28_RS12765 PF02633 Creatinine amidohydrolase CDO28_RS12770 PF01047 MarR family CDO28_RS12775 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS12780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS12780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS12785 PF07722 Peptidase C26 CDO28_RS12790 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS12790 PF00563 EAL domain CDO28_RS12790 PF08447 PAS fold CDO28_RS12790 PF08448 PAS fold CDO28_RS12800 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDO28_RS12800 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDO28_RS12805 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDO28_RS12810 PF02233 NAD(P) transhydrogenase beta subunit CDO28_RS12815 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS12815 PF00072 Response regulator receiver domain CDO28_RS12830 PF01165 Ribosomal protein S21 CDO28_RS12840 PF01266 FAD dependent oxidoreductase CDO28_RS12850 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS12850 PF17806 Sarcosine oxidase A3 domain CDO28_RS12850 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS12850 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS12855 PF04268 Sarcosine oxidase, gamma subunit family CDO28_RS12860 PF00107 Zinc-binding dehydrogenase CDO28_RS12860 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS12870 PF01575 MaoC like domain CDO28_RS12875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO28_RS12875 PF18390 Glycogen debranching enzyme C-terminal domain CDO28_RS12875 PF00128 Alpha amylase, catalytic domain CDO28_RS12880 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO28_RS12880 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO28_RS12880 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO28_RS12880 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO28_RS12885 PF00534 Glycosyl transferases group 1 CDO28_RS12885 PF08323 Starch synthase catalytic domain CDO28_RS12890 PF00483 Nucleotidyl transferase CDO28_RS12895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO28_RS12895 PF02806 Alpha amylase, C-terminal all-beta domain CDO28_RS12895 PF00128 Alpha amylase, catalytic domain CDO28_RS12900 PF00343 Carbohydrate phosphorylase CDO28_RS12910 PF08379 Bacterial transglutaminase-like N-terminal region CDO28_RS12910 PF01841 Transglutaminase-like superfamily CDO28_RS12915 PF14403 Circularly permuted ATP-grasp type 2 CDO28_RS12915 PF04168 A predicted alpha-helical domain with a conserved ER motif. CDO28_RS12920 PF00248 Aldo/keto reductase family CDO28_RS12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS12925 PF03466 LysR substrate binding domain CDO28_RS12965 PF00127 Copper binding proteins, plastocyanin/azurin family CDO28_RS12980 PF00920 Dehydratase family CDO28_RS12990 PF00072 Response regulator receiver domain CDO28_RS13000 PF00459 Inositol monophosphatase family CDO28_RS13010 PF00011 Hsp20/alpha crystallin family CDO28_RS13015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS13020 PF00005 ABC transporter CDO28_RS13020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS13025 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS13030 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS13035 PF00561 alpha/beta hydrolase fold CDO28_RS13040 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS13040 PF03472 Autoinducer binding domain CDO28_RS13045 PF00561 alpha/beta hydrolase fold CDO28_RS13050 PF13593 SBF-like CPA transporter family (DUF4137) CDO28_RS13055 PF01212 Beta-eliminating lyase CDO28_RS13060 PF01493 GXGXG motif CDO28_RS13060 PF04898 Glutamate synthase central domain CDO28_RS13060 PF01645 Conserved region in glutamate synthase CDO28_RS13060 PF00310 Glutamine amidotransferases class-II CDO28_RS13065 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDO28_RS13065 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS13075 PF13406 Transglycosylase SLT domain CDO28_RS13080 PF00483 Nucleotidyl transferase CDO28_RS13090 PF01957 NfeD-like C-terminal, partner-binding CDO28_RS13095 PF01145 SPFH domain / Band 7 family CDO28_RS13095 PF16200 C-terminal region of band_7 CDO28_RS13100 PF00762 Ferrochelatase CDO28_RS13105 PF00149 Calcineurin-like phosphoesterase CDO28_RS13105 PF02872 5'-nucleotidase, C-terminal domain CDO28_RS13115 PF03435 Saccharopine dehydrogenase NADP binding domain CDO28_RS13115 PF16653 Saccharopine dehydrogenase C-terminal domain CDO28_RS13120 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS13130 PF00425 chorismate binding enzyme CDO28_RS13130 PF04715 Anthranilate synthase component I, N terminal region CDO28_RS13140 PF00072 Response regulator receiver domain CDO28_RS13140 PF02954 Bacterial regulatory protein, Fis family CDO28_RS13140 PF00158 Sigma-54 interaction domain CDO28_RS13145 PF05951 Bacterial protein of unknown function (DUF882) CDO28_RS13150 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CDO28_RS13170 PF00224 Pyruvate kinase, barrel domain CDO28_RS13170 PF02887 Pyruvate kinase, alpha/beta domain CDO28_RS13180 PF00444 Ribosomal protein L36 CDO28_RS13185 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDO28_RS13185 PF02222 ATP-grasp domain CDO28_RS13190 PF00731 AIR carboxylase CDO28_RS13205 PF01022 Bacterial regulatory protein, arsR family CDO28_RS13225 PF00459 Inositol monophosphatase family CDO28_RS13235 PF00691 OmpA family CDO28_RS13235 PF01389 OmpA-like transmembrane domain CDO28_RS13240 PF00664 ABC transporter transmembrane region CDO28_RS13240 PF00005 ABC transporter CDO28_RS13245 PF01197 Ribosomal protein L31 CDO28_RS13270 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS13275 PF02567 Phenazine biosynthesis-like protein CDO28_RS13280 PF00274 Fructose-bisphosphate aldolase class-I CDO28_RS13285 PF00162 Phosphoglycerate kinase CDO28_RS13295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDO28_RS13295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO28_RS13300 PF00456 Transketolase, thiamine diphosphate binding domain CDO28_RS13300 PF02779 Transketolase, pyrimidine binding domain CDO28_RS13300 PF02780 Transketolase, C-terminal domain CDO28_RS13335 PF13277 YmdB-like protein CDO28_RS13340 PF13533 Biotin-lipoyl like CDO28_RS13345 PF00873 AcrB/AcrD/AcrF family CDO28_RS13355 PF01709 Transcriptional regulator CDO28_RS13360 PF00296 Luciferase-like monooxygenase CDO28_RS13365 PF02075 Crossover junction endodeoxyribonuclease RuvC CDO28_RS13370 PF01330 RuvA N terminal domain CDO28_RS13370 PF07499 RuvA, C-terminal domain CDO28_RS13375 PF05491 RuvB C-terminal winged helix domain CDO28_RS13375 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDO28_RS13375 PF17864 RuvB AAA lid domain CDO28_RS13380 PF00149 Calcineurin-like phosphoesterase CDO28_RS13385 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS13400 PF03061 Thioesterase superfamily CDO28_RS13405 PF01068 ATP dependent DNA ligase domain CDO28_RS13405 PF13298 DNA polymerase Ligase (LigD) CDO28_RS13405 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS13410 PF01618 MotA/TolQ/ExbB proton channel family CDO28_RS13415 PF02472 Biopolymer transport protein ExbD/TolR CDO28_RS13425 PF07676 WD40-like Beta Propeller Repeat CDO28_RS13425 PF04052 TolB amino-terminal domain CDO28_RS13430 PF00691 OmpA family CDO28_RS13440 PF01171 PP-loop family CDO28_RS13445 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS13445 PF17862 AAA+ lid domain CDO28_RS13445 PF06480 FtsH Extracellular CDO28_RS13445 PF01434 Peptidase family M41 CDO28_RS13450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDO28_RS13450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDO28_RS13450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDO28_RS13450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDO28_RS13460 PF13505 Outer membrane protein beta-barrel domain CDO28_RS13470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS13470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS13470 PF01842 ACT domain CDO28_RS13480 PF00709 Adenylosuccinate synthetase CDO28_RS13490 PF04542 Sigma-70 region 2 CDO28_RS13490 PF04545 Sigma-70, region 4 CDO28_RS13490 PF00140 Sigma-70 factor, region 1.2 CDO28_RS13495 PF00849 RNA pseudouridylate synthase CDO28_RS13505 PF00588 SpoU rRNA Methylase family CDO28_RS13520 PF10090 Histidine phosphotransferase C-terminal domain CDO28_RS13530 PF00072 Response regulator receiver domain CDO28_RS13530 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS13550 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS13550 PF03472 Autoinducer binding domain CDO28_RS13605 PF05962 HutD CDO28_RS13610 PF07670 Nucleoside recognition CDO28_RS13615 PF00221 Aromatic amino acid lyase CDO28_RS13620 PF00571 CBS domain CDO28_RS13620 PF00005 ABC transporter CDO28_RS13625 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS13635 PF01979 Amidohydrolase family CDO28_RS13640 PF07702 UTRA domain CDO28_RS13640 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS13645 PF00202 Aminotransferase class-III CDO28_RS13650 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS13655 PF00202 Aminotransferase class-III CDO28_RS13660 PF01037 Lrp/AsnC ligand binding domain CDO28_RS13665 PF06719 AraC-type transcriptional regulator N-terminus CDO28_RS13665 PF12833 Helix-turn-helix domain CDO28_RS13670 PF00107 Zinc-binding dehydrogenase CDO28_RS13670 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS13675 PF01037 Lrp/AsnC ligand binding domain CDO28_RS13680 PF01546 Peptidase family M20/M25/M40 CDO28_RS13680 PF07687 Peptidase dimerisation domain CDO28_RS13685 PF00768 D-alanyl-D-alanine carboxypeptidase CDO28_RS13685 PF07943 Penicillin-binding protein 5, C-terminal domain CDO28_RS13690 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS13690 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO28_RS13695 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CDO28_RS13700 PF01850 PIN domain CDO28_RS13705 PF01206 Sulfurtransferase TusA CDO28_RS13710 PF03734 L,D-transpeptidase catalytic domain CDO28_RS13715 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDO28_RS13720 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS13720 PF00589 Phage integrase family CDO28_RS13730 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDO28_RS13740 PF01202 Shikimate kinase CDO28_RS13745 PF01761 3-dehydroquinate synthase CDO28_RS13750 PF01595 Cyclin M transmembrane N-terminal domain CDO28_RS13750 PF03471 Transporter associated domain CDO28_RS13750 PF00571 CBS domain CDO28_RS13755 PF01722 BolA-like protein CDO28_RS13760 PF00226 DnaJ domain CDO28_RS13765 PF07728 AAA domain (dynein-related subfamily) CDO28_RS13765 PF08406 CbbQ/NirQ/NorQ C-terminal CDO28_RS13765 PF12556 Cobaltochelatase CobS subunit N terminal CDO28_RS13770 PF11775 Cobalamin biosynthesis protein CobT VWA domain CDO28_RS13770 PF06213 Cobalamin biosynthesis protein CobT CDO28_RS13780 PF02592 Putative vitamin uptake transporter CDO28_RS13785 PF00830 Ribosomal L28 family CDO28_RS13805 PF00753 Metallo-beta-lactamase superfamily CDO28_RS13805 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDO28_RS13810 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS13815 PF00155 Aminotransferase class I and II CDO28_RS13820 PF02153 Prephenate dehydrogenase CDO28_RS13830 PF04752 ChaC-like protein CDO28_RS13850 PF00005 ABC transporter CDO28_RS13865 PF00156 Phosphoribosyl transferase domain CDO28_RS13870 PF00072 Response regulator receiver domain CDO28_RS13885 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO28_RS13885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO28_RS13895 PF00206 Lyase CDO28_RS13895 PF14698 Argininosuccinate lyase C-terminal CDO28_RS13900 PF08534 Redoxin CDO28_RS13905 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO28_RS13905 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO28_RS13910 PF00766 Electron transfer flavoprotein FAD-binding domain CDO28_RS13910 PF01012 Electron transfer flavoprotein domain CDO28_RS13915 PF01012 Electron transfer flavoprotein domain CDO28_RS13925 PF01923 Cobalamin adenosyltransferase CDO28_RS13935 PF00106 short chain dehydrogenase CDO28_RS13945 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDO28_RS13980 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS13980 PF00501 AMP-binding enzyme CDO28_RS13995 PF07690 Major Facilitator Superfamily CDO28_RS14000 PF07516 SecA Wing and Scaffold domain CDO28_RS14000 PF07517 SecA DEAD-like domain CDO28_RS14000 PF01043 SecA preprotein cross-linking domain CDO28_RS14000 PF02810 SEC-C motif CDO28_RS14005 PF00639 PPIC-type PPIASE domain CDO28_RS14010 PF01960 ArgJ family CDO28_RS14020 PF00293 NUDIX domain CDO28_RS14035 PF08241 Methyltransferase domain CDO28_RS14040 PF00156 Phosphoribosyl transferase domain CDO28_RS14045 PF00462 Glutaredoxin CDO28_RS14050 PF00795 Carbon-nitrogen hydrolase CDO28_RS14070 PF13840 ACT domain CDO28_RS14070 PF01842 ACT domain CDO28_RS14070 PF00696 Amino acid kinase family CDO28_RS14075 PF01590 GAF domain CDO28_RS14075 PF00391 PEP-utilising enzyme, mobile domain CDO28_RS14075 PF05524 PEP-utilising enzyme, N-terminal CDO28_RS14075 PF02896 PEP-utilising enzyme, TIM barrel domain CDO28_RS14080 PF03462 PCRF domain CDO28_RS14080 PF00472 RF-1 domain CDO28_RS14085 PF17827 PrmC N-terminal domain CDO28_RS14085 PF05175 Methyltransferase small domain CDO28_RS14100 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS14100 PF07724 AAA domain (Cdc48 subfamily) CDO28_RS14100 PF02861 Clp amino terminal domain, pathogenicity island component CDO28_RS14100 PF10431 C-terminal, D2-small domain, of ClpB protein CDO28_RS14100 PF17871 AAA lid domain CDO28_RS14105 PF01551 Peptidase family M23 CDO28_RS14105 PF04225 Opacity-associated protein A LysM-like domain CDO28_RS14145 PF10996 Beta-Casp domain CDO28_RS14145 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDO28_RS14145 PF00753 Metallo-beta-lactamase superfamily CDO28_RS14150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS14150 PF03466 LysR substrate binding domain CDO28_RS14155 PF00355 Rieske [2Fe-2S] domain CDO28_RS14160 PF01177 Asp/Glu/Hydantoin racemase CDO28_RS14170 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS14170 PF07729 FCD domain CDO28_RS14175 PF00005 ABC transporter CDO28_RS14175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS14180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS14180 PF00005 ABC transporter CDO28_RS14185 PF01979 Amidohydrolase family CDO28_RS14190 PF01979 Amidohydrolase family CDO28_RS14195 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS14195 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14200 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS14215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS14220 PF01979 Amidohydrolase family CDO28_RS14225 PF00202 Aminotransferase class-III CDO28_RS14230 PF00857 Isochorismatase family CDO28_RS14240 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS14245 PF00005 ABC transporter CDO28_RS14250 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDO28_RS14250 PF00005 ABC transporter CDO28_RS14255 PF13458 Periplasmic binding protein CDO28_RS14260 PF00857 Isochorismatase family CDO28_RS14270 PF01380 SIS domain CDO28_RS14270 PF01418 Helix-turn-helix domain, rpiR family CDO28_RS14275 PF00120 Glutamine synthetase, catalytic domain CDO28_RS14275 PF03951 Glutamine synthetase, beta-Grasp domain CDO28_RS14300 PF00005 ABC transporter CDO28_RS14305 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14315 PF07690 Major Facilitator Superfamily CDO28_RS14320 PF00456 Transketolase, thiamine diphosphate binding domain CDO28_RS14320 PF02780 Transketolase, C-terminal domain CDO28_RS14320 PF02779 Transketolase, pyrimidine binding domain CDO28_RS14325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS14325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS14330 PF07702 UTRA domain CDO28_RS14330 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS14340 PF13407 Periplasmic binding protein domain CDO28_RS14345 PF00005 ABC transporter CDO28_RS14350 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS14360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS14360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS14365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS14365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS14370 PF01791 DeoC/LacD family aldolase CDO28_RS14375 PF01380 SIS domain CDO28_RS14375 PF01418 Helix-turn-helix domain, rpiR family CDO28_RS14380 PF12706 Beta-lactamase superfamily domain CDO28_RS14385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS14385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS14395 PF01081 KDPG and KHG aldolase CDO28_RS14400 PF06560 Glucose-6-phosphate isomerase (GPI) CDO28_RS14415 PF00465 Iron-containing alcohol dehydrogenase CDO28_RS14425 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS14425 PF07729 FCD domain CDO28_RS14450 PF00005 ABC transporter CDO28_RS14460 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS14465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS14465 PF03466 LysR substrate binding domain CDO28_RS14470 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14475 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS14475 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS14480 PF00005 ABC transporter CDO28_RS14490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS14495 PF01546 Peptidase family M20/M25/M40 CDO28_RS14515 PF00005 ABC transporter CDO28_RS14520 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS14540 PF00355 Rieske [2Fe-2S] domain CDO28_RS14545 PF00107 Zinc-binding dehydrogenase CDO28_RS14545 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS14555 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS14555 PF14759 Reductase C-terminal CDO28_RS14570 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS14570 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS14570 PF16350 FAD dependent oxidoreductase central domain CDO28_RS14570 PF01266 FAD dependent oxidoreductase CDO28_RS14580 PF00510 Cytochrome c oxidase subunit III CDO28_RS14585 PF00510 Cytochrome c oxidase subunit III CDO28_RS14590 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS14595 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO28_RS14600 PF00034 Cytochrome c CDO28_RS14605 PF00005 ABC transporter CDO28_RS14605 PF17912 MalK OB fold domain CDO28_RS14610 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14615 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14625 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS14630 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS14635 PF00872 Transposase, Mutator family CDO28_RS14645 PF00120 Glutamine synthetase, catalytic domain CDO28_RS14650 PF01266 FAD dependent oxidoreductase CDO28_RS14670 PF00171 Aldehyde dehydrogenase family CDO28_RS14680 PF00155 Aminotransferase class I and II CDO28_RS14685 PF03466 LysR substrate binding domain CDO28_RS14685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS14690 PF00491 Arginase family CDO28_RS14700 PF08402 TOBE domain CDO28_RS14700 PF00005 ABC transporter CDO28_RS14705 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14715 PF00795 Carbon-nitrogen hydrolase CDO28_RS14720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO28_RS14725 PF03358 NADPH-dependent FMN reductase CDO28_RS14750 PF01738 Dienelactone hydrolase family CDO28_RS14755 PF00106 short chain dehydrogenase CDO28_RS14760 PF13545 Crp-like helix-turn-helix domain CDO28_RS14760 PF00027 Cyclic nucleotide-binding domain CDO28_RS14765 PF00072 Response regulator receiver domain CDO28_RS14770 PF00459 Inositol monophosphatase family CDO28_RS14775 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS14780 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS14780 PF11862 Domain of unknown function (DUF3382) CDO28_RS14785 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDO28_RS14785 PF00005 ABC transporter CDO28_RS14790 PF00005 ABC transporter CDO28_RS14800 PF13458 Periplasmic binding protein CDO28_RS14805 PF01047 MarR family CDO28_RS14810 PF00561 alpha/beta hydrolase fold CDO28_RS14815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS14815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS14820 PF01774 UreD urease accessory protein CDO28_RS14825 PF00547 Urease, gamma subunit CDO28_RS14830 PF06906 Protein of unknown function (DUF1272) CDO28_RS14835 PF00699 Urease beta subunit CDO28_RS14840 PF07007 Lysozyme inhibitor LprI CDO28_RS14850 PF00449 Urease alpha-subunit, N-terminal domain CDO28_RS14850 PF01979 Amidohydrolase family CDO28_RS14870 PF08534 Redoxin CDO28_RS14880 PF02814 UreE urease accessory protein, N-terminal domain CDO28_RS14880 PF05194 UreE urease accessory protein, C-terminal domain CDO28_RS14885 PF01730 UreF CDO28_RS14890 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS14895 PF00873 AcrB/AcrD/AcrF family CDO28_RS14910 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14915 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14925 PF00005 ABC transporter CDO28_RS14935 PF01979 Amidohydrolase family CDO28_RS14940 PF07687 Peptidase dimerisation domain CDO28_RS14940 PF01546 Peptidase family M20/M25/M40 CDO28_RS14945 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS14945 PF08362 YcdC-like protein, C-terminal region CDO28_RS14955 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS14960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS14960 PF03466 LysR substrate binding domain CDO28_RS14965 PF00107 Zinc-binding dehydrogenase CDO28_RS14965 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS14970 PF01180 Dihydroorotate dehydrogenase CDO28_RS14975 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDO28_RS14975 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS14980 PF04198 Putative sugar-binding domain CDO28_RS14990 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS14995 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15000 PF08402 TOBE domain CDO28_RS15000 PF00005 ABC transporter CDO28_RS15010 PF08125 Mannitol dehydrogenase C-terminal domain CDO28_RS15010 PF01232 Mannitol dehydrogenase Rossmann domain CDO28_RS15015 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS15020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS15020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS15025 PF00072 Response regulator receiver domain CDO28_RS15035 PF04542 Sigma-70 region 2 CDO28_RS15035 PF08281 Sigma-70, region 4 CDO28_RS15040 PF07536 HWE histidine kinase CDO28_RS15040 PF08447 PAS fold CDO28_RS15040 PF13426 PAS domain CDO28_RS15055 PF00005 ABC transporter CDO28_RS15060 PF01032 FecCD transport family CDO28_RS15065 PF01497 Periplasmic binding protein CDO28_RS15115 PF01152 Bacterial-like globin CDO28_RS15135 PF00893 Small Multidrug Resistance protein CDO28_RS15140 PF01244 Membrane dipeptidase (Peptidase family M19) CDO28_RS15145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS15150 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15155 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS15155 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS15160 PF00005 ABC transporter CDO28_RS15165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS15165 PF00005 ABC transporter CDO28_RS15170 PF00294 pfkB family carbohydrate kinase CDO28_RS15175 PF00128 Alpha amylase, catalytic domain CDO28_RS15180 PF13382 Adenine deaminase C-terminal domain CDO28_RS15180 PF01979 Amidohydrolase family CDO28_RS15185 PF00202 Aminotransferase class-III CDO28_RS15195 PF01022 Bacterial regulatory protein, arsR family CDO28_RS15205 PF00005 ABC transporter CDO28_RS15205 PF00571 CBS domain CDO28_RS15210 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15215 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDO28_RS15220 PF00265 Thymidine kinase CDO28_RS15240 PF04480 Protein of unknown function (DUF559) CDO28_RS15245 PF01609 Transposase DDE domain CDO28_RS15260 PF01268 Formate--tetrahydrofolate ligase CDO28_RS15270 PF04886 PT repeat CDO28_RS15270 PF07715 TonB-dependent Receptor Plug Domain CDO28_RS15270 PF00593 TonB dependent receptor CDO28_RS15275 PF04715 Anthranilate synthase component I, N terminal region CDO28_RS15275 PF00117 Glutamine amidotransferase class-I CDO28_RS15275 PF00425 chorismate binding enzyme CDO28_RS15280 PF01545 Cation efflux family CDO28_RS15280 PF16916 Dimerisation domain of Zinc Transporter CDO28_RS15285 PF14489 QueF-like protein CDO28_RS15290 PF01636 Phosphotransferase enzyme family CDO28_RS15305 PF16916 Dimerisation domain of Zinc Transporter CDO28_RS15305 PF01545 Cation efflux family CDO28_RS15315 PF00574 Clp protease CDO28_RS15325 PF08502 LeuA allosteric (dimerisation) domain CDO28_RS15325 PF00682 HMGL-like CDO28_RS15330 PF07704 Rv0623-like transcription factor CDO28_RS15335 PF01850 PIN domain CDO28_RS15345 PF08281 Sigma-70, region 4 CDO28_RS15345 PF04542 Sigma-70 region 2 CDO28_RS15355 PF00293 NUDIX domain CDO28_RS15360 PF02661 Fic/DOC family CDO28_RS15370 PF13409 Glutathione S-transferase, N-terminal domain CDO28_RS15395 PF07726 ATPase family associated with various cellular activities (AAA) CDO28_RS15395 PF17863 AAA lid domain CDO28_RS15405 PF00293 NUDIX domain CDO28_RS15410 PF01743 Poly A polymerase head domain CDO28_RS15410 PF12627 Probable RNA and SrmB- binding site of polymerase A CDO28_RS15410 PF13735 tRNA nucleotidyltransferase domain 2 putative CDO28_RS15420 PF00156 Phosphoribosyl transferase domain CDO28_RS15435 PF01926 50S ribosome-binding GTPase CDO28_RS15435 PF06071 Protein of unknown function (DUF933) CDO28_RS15440 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDO28_RS15445 PF01195 Peptidyl-tRNA hydrolase CDO28_RS15450 PF14693 Ribosomal protein TL5, C-terminal domain CDO28_RS15450 PF01386 Ribosomal L25p family CDO28_RS15455 PF03594 Benzoate membrane transport protein CDO28_RS15460 PF02954 Bacterial regulatory protein, Fis family CDO28_RS15460 PF13426 PAS domain CDO28_RS15460 PF00158 Sigma-54 interaction domain CDO28_RS15465 PF00171 Aldehyde dehydrogenase family CDO28_RS15480 PF14572 Phosphoribosyl synthetase-associated domain CDO28_RS15480 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDO28_RS15495 PF02578 Multi-copper polyphenol oxidoreductase laccase CDO28_RS15505 PF01790 Prolipoprotein diacylglyceryl transferase CDO28_RS15520 PF03807 NADP oxidoreductase coenzyme F420-dependent CDO28_RS15520 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDO28_RS15525 PF01588 Putative tRNA binding domain CDO28_RS15530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS15530 PF16527 Two-component sensor protein CpxA, periplasmic domain CDO28_RS15530 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS15530 PF00672 HAMP domain CDO28_RS15535 PF00072 Response regulator receiver domain CDO28_RS15535 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS15540 PF12802 MarR family CDO28_RS15560 PF00753 Metallo-beta-lactamase superfamily CDO28_RS15570 PF00313 'Cold-shock' DNA-binding domain CDO28_RS15580 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS15595 PF00155 Aminotransferase class I and II CDO28_RS15605 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS15605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS15615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS15615 PF03466 LysR substrate binding domain CDO28_RS15620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDO28_RS15620 PF00117 Glutamine amidotransferase class-I CDO28_RS15630 PF01807 CHC2 zinc finger CDO28_RS15630 PF13662 Toprim domain CDO28_RS15630 PF08275 DNA primase catalytic core, N-terminal domain CDO28_RS15635 PF00570 HRDC domain CDO28_RS15635 PF09382 RQC domain CDO28_RS15635 PF00271 Helicase conserved C-terminal domain CDO28_RS15635 PF16124 RecQ zinc-binding CDO28_RS15635 PF00270 DEAD/DEAH box helicase CDO28_RS15640 PF00155 Aminotransferase class I and II CDO28_RS15645 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS15645 PF00107 Zinc-binding dehydrogenase CDO28_RS15650 PF00140 Sigma-70 factor, region 1.2 CDO28_RS15650 PF04542 Sigma-70 region 2 CDO28_RS15650 PF04539 Sigma-70 region 3 CDO28_RS15650 PF04546 Sigma-70, non-essential region CDO28_RS15650 PF04545 Sigma-70, region 4 CDO28_RS15650 PF03979 Sigma-70 factor, region 1.1 CDO28_RS15670 PF07237 Protein of unknown function (DUF1428) CDO28_RS15675 PF01894 Uncharacterised protein family UPF0047 CDO28_RS15690 PF04402 Protein of unknown function (DUF541) CDO28_RS15725 PF03062 MBOAT, membrane-bound O-acyltransferase family CDO28_RS15735 PF03796 DnaB-like helicase C terminal domain CDO28_RS15775 PF01070 FMN-dependent dehydrogenase CDO28_RS15795 PF02522 Aminoglycoside 3-N-acetyltransferase CDO28_RS15815 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDO28_RS15845 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS15850 PF08361 MAATS-type transcriptional repressor, C-terminal region CDO28_RS15850 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS15860 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS15870 PF03466 LysR substrate binding domain CDO28_RS15870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS15875 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS15875 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS15875 PF16350 FAD dependent oxidoreductase central domain CDO28_RS15875 PF01266 FAD dependent oxidoreductase CDO28_RS15880 PF16350 FAD dependent oxidoreductase central domain CDO28_RS15880 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS15880 PF01266 FAD dependent oxidoreductase CDO28_RS15880 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS15905 PF07715 TonB-dependent Receptor Plug Domain CDO28_RS15905 PF00593 TonB dependent receptor CDO28_RS15910 PF00171 Aldehyde dehydrogenase family CDO28_RS15915 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15920 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15925 PF08402 TOBE domain CDO28_RS15925 PF00005 ABC transporter CDO28_RS15930 PF13416 Bacterial extracellular solute-binding protein CDO28_RS15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS15935 PF03466 LysR substrate binding domain CDO28_RS15940 PF07859 alpha/beta hydrolase fold CDO28_RS15950 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO28_RS15950 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO28_RS15955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS15965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS15965 PF00005 ABC transporter CDO28_RS15970 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15970 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS15975 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS15980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS15985 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS15990 PF13607 Succinyl-CoA ligase like flavodoxin domain CDO28_RS15990 PF13380 CoA binding domain CDO28_RS16000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS16000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS16000 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS16005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO28_RS16005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO28_RS16010 PF05853 beta-keto acid cleavage enzyme CDO28_RS16015 PF12833 Helix-turn-helix domain CDO28_RS16015 PF14525 AraC-binding-like domain CDO28_RS16025 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS16030 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS16040 PF08402 TOBE domain CDO28_RS16040 PF00005 ABC transporter CDO28_RS16045 PF00072 Response regulator receiver domain CDO28_RS16045 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS16050 PF04198 Putative sugar-binding domain CDO28_RS16055 PF01547 Bacterial extracellular solute-binding protein CDO28_RS16060 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS16065 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS16070 PF00005 ABC transporter CDO28_RS16070 PF17912 MalK OB fold domain CDO28_RS16070 PF03459 TOBE domain CDO28_RS16075 PF00005 ABC transporter CDO28_RS16075 PF17912 MalK OB fold domain CDO28_RS16080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS16080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS16085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS16085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS16085 PF01842 ACT domain CDO28_RS16090 PF00596 Class II Aldolase and Adducin N-terminal domain CDO28_RS16095 PF01266 FAD dependent oxidoreductase CDO28_RS16095 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDO28_RS16105 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS16115 PF01261 Xylose isomerase-like TIM barrel CDO28_RS16120 PF08220 DeoR-like helix-turn-helix domain CDO28_RS16120 PF00455 DeoR C terminal sensor domain CDO28_RS16125 PF00121 Triosephosphate isomerase CDO28_RS16130 PF02502 Ribose/Galactose Isomerase CDO28_RS16135 PF01609 Transposase DDE domain CDO28_RS16135 PF13808 DDE_Tnp_1-associated CDO28_RS16140 PF00872 Transposase, Mutator family CDO28_RS16145 PF07715 TonB-dependent Receptor Plug Domain CDO28_RS16145 PF00593 TonB dependent receptor CDO28_RS16155 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDO28_RS16160 PF00005 ABC transporter CDO28_RS16160 PF08402 TOBE domain CDO28_RS16180 PF01418 Helix-turn-helix domain, rpiR family CDO28_RS16180 PF01380 SIS domain CDO28_RS16195 PF03951 Glutamine synthetase, beta-Grasp domain CDO28_RS16195 PF00120 Glutamine synthetase, catalytic domain CDO28_RS16200 PF00171 Aldehyde dehydrogenase family CDO28_RS16205 PF00465 Iron-containing alcohol dehydrogenase CDO28_RS16210 PF07015 VirC1 protein CDO28_RS16215 PF01266 FAD dependent oxidoreductase CDO28_RS16220 PF03734 L,D-transpeptidase catalytic domain CDO28_RS16220 PF01476 LysM domain CDO28_RS16240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS16240 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS16240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS16250 PF12697 Alpha/beta hydrolase family CDO28_RS16255 PF00445 Ribonuclease T2 family CDO28_RS16260 PF12848 ABC transporter CDO28_RS16260 PF00005 ABC transporter CDO28_RS16265 PF03551 Transcriptional regulator PadR-like family CDO28_RS16265 PF13847 Methyltransferase domain CDO28_RS16270 PF02219 Methylenetetrahydrofolate reductase CDO28_RS16290 PF01183 Glycosyl hydrolases family 25 CDO28_RS16315 PF01810 LysE type translocator CDO28_RS16320 PF00365 Phosphofructokinase CDO28_RS16325 PF00226 DnaJ domain CDO28_RS16325 PF05099 Tellurite resistance protein TerB CDO28_RS16330 PF01510 N-acetylmuramoyl-L-alanine amidase CDO28_RS16350 PF02381 MraZ protein, putative antitoxin-like CDO28_RS16355 PF01795 MraW methylase family CDO28_RS16365 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS16365 PF03717 Penicillin-binding Protein dimerisation domain CDO28_RS16370 PF02875 Mur ligase family, glutamate ligase domain CDO28_RS16370 PF08245 Mur ligase middle domain CDO28_RS16370 PF01225 Mur ligase family, catalytic domain CDO28_RS16375 PF02875 Mur ligase family, glutamate ligase domain CDO28_RS16375 PF08245 Mur ligase middle domain CDO28_RS16375 PF01225 Mur ligase family, catalytic domain CDO28_RS16380 PF00953 Glycosyl transferase family 4 CDO28_RS16380 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CDO28_RS16385 PF08245 Mur ligase middle domain CDO28_RS16390 PF01098 Cell cycle protein CDO28_RS16395 PF04101 Glycosyltransferase family 28 C-terminal domain CDO28_RS16395 PF03033 Glycosyltransferase family 28 N-terminal domain CDO28_RS16400 PF02875 Mur ligase family, glutamate ligase domain CDO28_RS16400 PF08245 Mur ligase middle domain CDO28_RS16400 PF01225 Mur ligase family, catalytic domain CDO28_RS16405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDO28_RS16405 PF01565 FAD binding domain CDO28_RS16410 PF07690 Major Facilitator Superfamily CDO28_RS16410 PF00083 Sugar (and other) transporter CDO28_RS16415 PF00230 Major intrinsic protein CDO28_RS16420 PF01820 D-ala D-ala ligase N-terminus CDO28_RS16420 PF07478 D-ala D-ala ligase C-terminus CDO28_RS16425 PF03799 Cell division protein FtsQ CDO28_RS16425 PF08478 POTRA domain, FtsQ-type CDO28_RS16430 PF02491 SHS2 domain inserted in FTSA CDO28_RS16435 PF12327 FtsZ family, C-terminal domain CDO28_RS16435 PF00091 Tubulin/FtsZ family, GTPase domain CDO28_RS16440 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDO28_RS16445 PF13525 Outer membrane lipoprotein CDO28_RS16450 PF02463 RecF/RecN/SMC N terminal domain CDO28_RS16455 PF03120 NAD-dependent DNA ligase OB-fold domain CDO28_RS16455 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDO28_RS16455 PF12826 Helix-hairpin-helix motif CDO28_RS16455 PF01653 NAD-dependent DNA ligase adenylation domain CDO28_RS16455 PF00533 BRCA1 C Terminus (BRCT) domain CDO28_RS16465 PF02569 Pantoate-beta-alanine ligase CDO28_RS16470 PF02548 Ketopantoate hydroxymethyltransferase CDO28_RS16490 PF01321 Creatinase/Prolidase N-terminal domain CDO28_RS16490 PF00557 Metallopeptidase family M24 CDO28_RS16515 PF02630 SCO1/SenC CDO28_RS16525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS16525 PF00672 HAMP domain CDO28_RS16530 PF01584 CheW-like domain CDO28_RS16550 PF17151 Periplasmic sensor domain CDO28_RS16550 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS16555 PF01738 Dienelactone hydrolase family CDO28_RS16555 PF00156 Phosphoribosyl transferase domain CDO28_RS16565 PF13361 UvrD-like helicase C-terminal domain CDO28_RS16565 PF00580 UvrD/REP helicase N-terminal domain CDO28_RS16575 PF04199 Putative cyclase CDO28_RS16580 PF13533 Biotin-lipoyl like CDO28_RS16585 PF00873 AcrB/AcrD/AcrF family CDO28_RS16595 PF02913 FAD linked oxidases, C-terminal domain CDO28_RS16595 PF01565 FAD binding domain CDO28_RS16605 PF01609 Transposase DDE domain CDO28_RS16655 PF00303 Thymidylate synthase CDO28_RS16660 PF13417 Glutathione S-transferase, N-terminal domain CDO28_RS16660 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS16665 PF00186 Dihydrofolate reductase CDO28_RS16670 PF01145 SPFH domain / Band 7 family CDO28_RS16675 PF01145 SPFH domain / Band 7 family CDO28_RS16690 PF13180 PDZ domain CDO28_RS16695 PF13302 Acetyltransferase (GNAT) domain CDO28_RS16725 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS16725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS16725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS16730 PF10369 Small subunit of acetolactate synthase CDO28_RS16735 PF00248 Aldo/keto reductase family CDO28_RS16740 PF00313 'Cold-shock' DNA-binding domain CDO28_RS16750 PF08241 Methyltransferase domain CDO28_RS16760 PF02979 Nitrile hydratase, alpha chain CDO28_RS16765 PF02211 Nitrile hydratase beta subunit CDO28_RS16780 PF08281 Sigma-70, region 4 CDO28_RS16780 PF04542 Sigma-70 region 2 CDO28_RS16800 PF05145 Transition state regulatory protein AbrB CDO28_RS16805 PF14490 Helix-hairpin-helix containing domain CDO28_RS16805 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CDO28_RS16805 PF13538 UvrD-like helicase C-terminal domain CDO28_RS16810 PF01734 Patatin-like phospholipase CDO28_RS16815 PF13191 AAA ATPase domain CDO28_RS16815 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS16820 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDO28_RS16860 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDO28_RS16865 PF00155 Aminotransferase class I and II CDO28_RS16865 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS16875 PF05368 NmrA-like family CDO28_RS16880 PF01638 HxlR-like helix-turn-helix CDO28_RS16885 PF01177 Asp/Glu/Hydantoin racemase CDO28_RS16890 PF01037 Lrp/AsnC ligand binding domain CDO28_RS16895 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS16910 PF07690 Major Facilitator Superfamily CDO28_RS16920 PF01636 Phosphotransferase enzyme family CDO28_RS16940 PF12704 MacB-like periplasmic core domain CDO28_RS16940 PF02687 FtsX-like permease family CDO28_RS16940 PF00005 ABC transporter CDO28_RS16945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS16955 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDO28_RS16955 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDO28_RS16965 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS16975 PF03734 L,D-transpeptidase catalytic domain CDO28_RS16975 PF17969 L,D-transpeptidase C-terminal domain CDO28_RS16975 PF01476 LysM domain CDO28_RS16985 PF00155 Aminotransferase class I and II CDO28_RS16990 PF13808 DDE_Tnp_1-associated CDO28_RS16990 PF01609 Transposase DDE domain CDO28_RS16995 PF00248 Aldo/keto reductase family CDO28_RS17005 PF01165 Ribosomal protein S21 CDO28_RS17015 PF00313 'Cold-shock' DNA-binding domain CDO28_RS17030 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS17035 PF00005 ABC transporter CDO28_RS17035 PF08402 TOBE domain CDO28_RS17050 PF12327 FtsZ family, C-terminal domain CDO28_RS17050 PF00091 Tubulin/FtsZ family, GTPase domain CDO28_RS17055 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS17060 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS17065 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS17075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS17105 PF02567 Phenazine biosynthesis-like protein CDO28_RS17135 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS17135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS17140 PF00664 ABC transporter transmembrane region CDO28_RS17140 PF00005 ABC transporter CDO28_RS17150 PF00593 TonB dependent receptor CDO28_RS17150 PF07660 Secretin and TonB N terminus short domain CDO28_RS17150 PF07715 TonB-dependent Receptor Plug Domain CDO28_RS17200 PF07886 BA14K-like protein CDO28_RS17235 PF01609 Transposase DDE domain CDO28_RS17235 PF13808 DDE_Tnp_1-associated CDO28_RS17265 PF00535 Glycosyl transferase family 2 CDO28_RS17300 PF02080 TrkA-C domain CDO28_RS17300 PF03600 Citrate transporter CDO28_RS17315 PF00924 Mechanosensitive ion channel CDO28_RS17315 PF12795 Mechanosensitive ion channel porin domain CDO28_RS17315 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDO28_RS17320 PF03741 Integral membrane protein TerC family CDO28_RS17355 PF00072 Response regulator receiver domain CDO28_RS17360 PF01965 DJ-1/PfpI family CDO28_RS17360 PF12833 Helix-turn-helix domain CDO28_RS17365 PF02583 Metal-sensitive transcriptional repressor CDO28_RS17370 PF16916 Dimerisation domain of Zinc Transporter CDO28_RS17370 PF01545 Cation efflux family CDO28_RS17380 PF00561 alpha/beta hydrolase fold CDO28_RS17395 PF03466 LysR substrate binding domain CDO28_RS17395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS17400 PF01022 Bacterial regulatory protein, arsR family CDO28_RS17425 PF02310 B12 binding domain CDO28_RS17425 PF02607 B12 binding domain CDO28_RS17425 PF02574 Homocysteine S-methyltransferase CDO28_RS17425 PF00809 Pterin binding enzyme CDO28_RS17425 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDO28_RS17445 PF07886 BA14K-like protein CDO28_RS17460 PF00551 Formyl transferase CDO28_RS17460 PF02911 Formyl transferase, C-terminal domain CDO28_RS17475 PF02310 B12 binding domain CDO28_RS17475 PF02607 B12 binding domain CDO28_RS17480 PF06253 Trimethylamine methyltransferase (MTTB) CDO28_RS17490 PF09992 Phosphodiester glycosidase CDO28_RS17500 PF00155 Aminotransferase class I and II CDO28_RS17505 PF01757 Acyltransferase family CDO28_RS17510 PF00809 Pterin binding enzyme CDO28_RS17510 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDO28_RS17510 PF02607 B12 binding domain CDO28_RS17510 PF02310 B12 binding domain CDO28_RS17510 PF02574 Homocysteine S-methyltransferase CDO28_RS17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS17515 PF03466 LysR substrate binding domain CDO28_RS17530 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDO28_RS17535 PF00005 ABC transporter CDO28_RS17535 PF00571 CBS domain CDO28_RS17550 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDO28_RS17555 PF00561 alpha/beta hydrolase fold CDO28_RS17560 PF00072 Response regulator receiver domain CDO28_RS17560 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS17570 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDO28_RS17575 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO28_RS17575 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS17580 PF02514 CobN/Magnesium Chelatase CDO28_RS17585 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CDO28_RS17600 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS17600 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS17605 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS17610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS17620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS17620 PF00005 ABC transporter CDO28_RS17625 PF01925 Sulfite exporter TauE/SafE CDO28_RS17630 PF01890 Cobalamin synthesis G C-terminus CDO28_RS17635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS17640 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDO28_RS17640 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS17645 PF00155 Aminotransferase class I and II CDO28_RS17650 PF03186 CobD/Cbib protein CDO28_RS17655 PF00550 Phosphopantetheine attachment site CDO28_RS17660 PF07977 FabA-like domain CDO28_RS17670 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS17670 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS17675 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS17675 PF00107 Zinc-binding dehydrogenase CDO28_RS17680 PF03279 Bacterial lipid A biosynthesis acyltransferase CDO28_RS17700 PF12833 Helix-turn-helix domain CDO28_RS17705 PF01235 Sodium:alanine symporter family CDO28_RS17710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS17710 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CDO28_RS17725 PF01547 Bacterial extracellular solute-binding protein CDO28_RS17730 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS17735 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS17740 PF17912 MalK OB fold domain CDO28_RS17740 PF00005 ABC transporter CDO28_RS17745 PF00703 Glycosyl hydrolases family 2 CDO28_RS17745 PF02837 Glycosyl hydrolases family 2, sugar binding domain CDO28_RS17745 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain CDO28_RS17760 PF00248 Aldo/keto reductase family CDO28_RS17765 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS17775 PF00665 Integrase core domain CDO28_RS17780 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS17790 PF04616 Glycosyl hydrolases family 43 CDO28_RS17790 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CDO28_RS17800 PF01297 Zinc-uptake complex component A periplasmic CDO28_RS17805 PF00005 ABC transporter CDO28_RS17810 PF00950 ABC 3 transport family CDO28_RS17815 PF01475 Ferric uptake regulator family CDO28_RS17825 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO28_RS17855 PF00872 Transposase, Mutator family CDO28_RS17865 PF00171 Aldehyde dehydrogenase family CDO28_RS17875 PF00701 Dihydrodipicolinate synthetase family CDO28_RS17880 PF07729 FCD domain CDO28_RS17880 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS17910 PF02796 Helix-turn-helix domain of resolvase CDO28_RS17910 PF00239 Resolvase, N terminal domain CDO28_RS17930 PF13276 HTH-like domain CDO28_RS17930 PF00665 Integrase core domain CDO28_RS17930 PF13333 Integrase core domain CDO28_RS17935 PF03050 Transposase IS66 family CDO28_RS17935 PF13817 IS66 C-terminal element CDO28_RS17935 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS17935 PF13007 Transposase C of IS166 homeodomain CDO28_RS17950 PF00589 Phage integrase family CDO28_RS17955 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS17955 PF00589 Phage integrase family CDO28_RS17970 PF07508 Recombinase CDO28_RS17970 PF13408 Recombinase zinc beta ribbon domain CDO28_RS17970 PF00239 Resolvase, N terminal domain CDO28_RS17985 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS17985 PF13007 Transposase C of IS166 homeodomain CDO28_RS17985 PF03050 Transposase IS66 family CDO28_RS17985 PF13817 IS66 C-terminal element CDO28_RS17995 PF00085 Thioredoxin CDO28_RS18000 PF00085 Thioredoxin CDO28_RS18010 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO28_RS18010 PF04963 Sigma-54 factor, core binding domain CDO28_RS18010 PF04552 Sigma-54, DNA binding domain CDO28_RS18015 PF00027 Cyclic nucleotide-binding domain CDO28_RS18015 PF13545 Crp-like helix-turn-helix domain CDO28_RS18035 PF00085 Thioredoxin CDO28_RS18095 PF01527 Transposase CDO28_RS18105 PF00872 Transposase, Mutator family CDO28_RS18110 PF00310 Glutamine amidotransferases class-II CDO28_RS18110 PF04898 Glutamate synthase central domain CDO28_RS18110 PF01645 Conserved region in glutamate synthase CDO28_RS18110 PF01493 GXGXG motif CDO28_RS18120 PF00120 Glutamine synthetase, catalytic domain CDO28_RS18120 PF03951 Glutamine synthetase, beta-Grasp domain CDO28_RS18125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS18125 PF18603 L-amino acid ligase C-terminal domain 2 CDO28_RS18130 PF00975 Thioesterase domain CDO28_RS18130 PF00550 Phosphopantetheine attachment site CDO28_RS18130 PF00668 Condensation domain CDO28_RS18130 PF00501 AMP-binding enzyme CDO28_RS18130 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS18135 PF05373 L-proline 3-hydroxylase, C-terminal CDO28_RS18135 PF05118 Aspartyl/Asparaginyl beta-hydroxylase CDO28_RS18140 PF00491 Arginase family CDO28_RS18145 PF00696 Amino acid kinase family CDO28_RS18155 PF01527 Transposase CDO28_RS18170 PF13007 Transposase C of IS166 homeodomain CDO28_RS18170 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS18170 PF03050 Transposase IS66 family CDO28_RS18170 PF13817 IS66 C-terminal element CDO28_RS18185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS18215 PF00144 Beta-lactamase CDO28_RS18220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS18230 PF00872 Transposase, Mutator family CDO28_RS18255 PF00872 Transposase, Mutator family CDO28_RS18260 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS18260 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS18265 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS18270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS18275 PF00005 ABC transporter CDO28_RS18275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS18285 PF01266 FAD dependent oxidoreductase CDO28_RS18310 PF05284 Protein of unknown function (DUF736) CDO28_RS18335 PF01381 Helix-turn-helix CDO28_RS18370 PF10502 Signal peptidase, peptidase S26 CDO28_RS18380 PF10145 Phage-related minor tail protein CDO28_RS18380 PF01464 Transglycosylase SLT domain CDO28_RS18380 PF01551 Peptidase family M23 CDO28_RS18390 PF02534 Type IV secretory system Conjugative DNA transfer CDO28_RS18405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS18405 PF00364 Biotin-requiring enzyme CDO28_RS18405 PF02785 Biotin carboxylase C-terminal domain CDO28_RS18405 PF00289 Biotin carboxylase, N-terminal domain CDO28_RS18410 PF02682 Carboxyltransferase domain, subdomain C and D CDO28_RS18415 PF03746 LamB/YcsF family CDO28_RS18425 PF03466 LysR substrate binding domain CDO28_RS18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS18440 PF00437 Type II/IV secretion system protein CDO28_RS18445 PF04956 TrbC/VIRB2 family CDO28_RS18455 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CDO28_RS18485 PF03743 Bacterial conjugation TrbI-like protein CDO28_RS18505 PF09722 Protein of unknown function (DUF2384) CDO28_RS18520 PF14464 Prokaryotic homologs of the JAB domain CDO28_RS18535 PF13361 UvrD-like helicase C-terminal domain CDO28_RS18535 PF00580 UvrD/REP helicase N-terminal domain CDO28_RS18535 PF12705 PD-(D/E)XK nuclease superfamily CDO28_RS18545 PF00270 DEAD/DEAH box helicase CDO28_RS18545 PF00271 Helicase conserved C-terminal domain CDO28_RS18545 PF08494 DEAD/H associated CDO28_RS18560 PF00589 Phage integrase family CDO28_RS18565 PF01207 Dihydrouridine synthase (Dus) CDO28_RS18570 PF00313 'Cold-shock' DNA-binding domain CDO28_RS18585 PF00684 DnaJ central domain CDO28_RS18585 PF01556 DnaJ C terminal domain CDO28_RS18585 PF00226 DnaJ domain CDO28_RS18595 PF04851 Type III restriction enzyme, res subunit CDO28_RS18595 PF00271 Helicase conserved C-terminal domain CDO28_RS18595 PF17757 UvrB interaction domain CDO28_RS18595 PF12344 Ultra-violet resistance protein B CDO28_RS18595 PF02151 UvrB/uvrC motif CDO28_RS18610 PF03061 Thioesterase superfamily CDO28_RS18615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS18615 PF08269 Cache domain CDO28_RS18655 PF00005 ABC transporter CDO28_RS18660 PF01061 ABC-2 type transporter CDO28_RS18675 PF02654 Cobalamin-5-phosphate synthase CDO28_RS18680 PF02277 Phosphoribosyltransferase CDO28_RS18685 PF01219 Prokaryotic diacylglycerol kinase CDO28_RS18690 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS18690 PF00989 PAS fold CDO28_RS18690 PF13188 PAS domain CDO28_RS18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS18700 PF03167 Uracil DNA glycosylase superfamily CDO28_RS18705 PF01037 Lrp/AsnC ligand binding domain CDO28_RS18705 PF13404 AsnC-type helix-turn-helix domain CDO28_RS18715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS18715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS18720 PF08241 Methyltransferase domain CDO28_RS18735 PF06233 Usg-like family CDO28_RS18740 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS18745 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS18750 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS18760 PF01389 OmpA-like transmembrane domain CDO28_RS18760 PF00691 OmpA family CDO28_RS18765 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CDO28_RS18770 PF12804 MobA-like NTP transferase domain CDO28_RS18775 PF00892 EamA-like transporter family CDO28_RS18780 PF04055 Radical SAM superfamily CDO28_RS18780 PF06463 Molybdenum Cofactor Synthesis C CDO28_RS18790 PF01047 MarR family CDO28_RS18795 PF12697 Alpha/beta hydrolase family CDO28_RS18805 PF00206 Lyase CDO28_RS18805 PF10415 Fumarase C C-terminus CDO28_RS18810 PF01471 Putative peptidoglycan binding domain CDO28_RS18810 PF03734 L,D-transpeptidase catalytic domain CDO28_RS18815 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS18820 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDO28_RS18830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS18830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS18835 PF01474 Class-II DAHP synthetase family CDO28_RS18865 PF00082 Subtilase family CDO28_RS18865 PF05922 Peptidase inhibitor I9 CDO28_RS18880 PF17092 Penicillin-binding protein OB-like domain CDO28_RS18880 PF00912 Transglycosylase CDO28_RS18880 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS18920 PF02080 TrkA-C domain CDO28_RS18920 PF03600 Citrate transporter CDO28_RS18965 PF01494 FAD binding domain CDO28_RS18995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS18995 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS19000 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS19000 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS19005 PF01799 [2Fe-2S] binding domain CDO28_RS19005 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS19035 PF03401 Tripartite tricarboxylate transporter family receptor CDO28_RS19050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19050 PF03466 LysR substrate binding domain CDO28_RS19055 PF03466 LysR substrate binding domain CDO28_RS19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19060 PF03358 NADPH-dependent FMN reductase CDO28_RS19070 PF01494 FAD binding domain CDO28_RS19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19075 PF03466 LysR substrate binding domain CDO28_RS19135 PF00563 EAL domain CDO28_RS19135 PF05231 MASE1 CDO28_RS19140 PF06776 Invasion associated locus B (IalB) protein CDO28_RS19145 PF12951 Passenger-associated-transport-repeat CDO28_RS19160 PF03466 LysR substrate binding domain CDO28_RS19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19170 PF03466 LysR substrate binding domain CDO28_RS19170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19180 PF07690 Major Facilitator Superfamily CDO28_RS19185 PF01638 HxlR-like helix-turn-helix CDO28_RS19190 PF10503 Esterase PHB depolymerase CDO28_RS19195 PF04072 Leucine carboxyl methyltransferase CDO28_RS19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19205 PF03466 LysR substrate binding domain CDO28_RS19230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS19235 PF00596 Class II Aldolase and Adducin N-terminal domain CDO28_RS19245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19245 PF03466 LysR substrate binding domain CDO28_RS19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19260 PF03466 LysR substrate binding domain CDO28_RS19265 PF12728 Helix-turn-helix domain CDO28_RS19280 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS19285 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS19290 PF00005 ABC transporter CDO28_RS19295 PF13407 Periplasmic binding protein domain CDO28_RS19305 PF00480 ROK family CDO28_RS19310 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS19315 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS19315 PF16859 Tetracyclin repressor-like, C-terminal domain CDO28_RS19340 PF01638 HxlR-like helix-turn-helix CDO28_RS19345 PF00561 alpha/beta hydrolase fold CDO28_RS19360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS19370 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS19375 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS19380 PF08386 TAP-like protein CDO28_RS19380 PF00561 alpha/beta hydrolase fold CDO28_RS19390 PF00561 alpha/beta hydrolase fold CDO28_RS19400 PF00175 Oxidoreductase NAD-binding domain CDO28_RS19400 PF00970 Oxidoreductase FAD-binding domain CDO28_RS19400 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS19405 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDO28_RS19405 PF00355 Rieske [2Fe-2S] domain CDO28_RS19410 PF03466 LysR substrate binding domain CDO28_RS19410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19420 PF01614 Bacterial transcriptional regulator CDO28_RS19420 PF09339 IclR helix-turn-helix domain CDO28_RS19440 PF01042 Endoribonuclease L-PSP CDO28_RS19445 PF01546 Peptidase family M20/M25/M40 CDO28_RS19445 PF07687 Peptidase dimerisation domain CDO28_RS19460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19475 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS19475 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS19480 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS19480 PF01799 [2Fe-2S] binding domain CDO28_RS19490 PF13593 SBF-like CPA transporter family (DUF4137) CDO28_RS19500 PF00330 Aconitase family (aconitate hydratase) CDO28_RS19500 PF00694 Aconitase C-terminal domain CDO28_RS19510 PF01970 Tripartite tricarboxylate transporter TctA family CDO28_RS19525 PF13784 Fic/DOC family N-terminal CDO28_RS19525 PF02661 Fic/DOC family CDO28_RS19535 PF01810 LysE type translocator CDO28_RS19545 PF12728 Helix-turn-helix domain CDO28_RS19565 PF03466 LysR substrate binding domain CDO28_RS19565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19570 PF07690 Major Facilitator Superfamily CDO28_RS19580 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO28_RS19585 PF00106 short chain dehydrogenase CDO28_RS19605 PF06441 Epoxide hydrolase N terminus CDO28_RS19625 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS19630 PF06441 Epoxide hydrolase N terminus CDO28_RS19635 PF02566 OsmC-like protein CDO28_RS19655 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDO28_RS19670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS19670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS19680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19680 PF03466 LysR substrate binding domain CDO28_RS19685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS19695 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS19700 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS19700 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS19705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS19705 PF00005 ABC transporter CDO28_RS19715 PF00246 Zinc carboxypeptidase CDO28_RS19720 PF01263 Aldose 1-epimerase CDO28_RS19770 PF00072 Response regulator receiver domain CDO28_RS19770 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS19775 PF03466 LysR substrate binding domain CDO28_RS19775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19780 PF01053 Cys/Met metabolism PLP-dependent enzyme CDO28_RS19785 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS19790 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS19795 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS19800 PF00005 ABC transporter CDO28_RS19805 PF00857 Isochorismatase family CDO28_RS19810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS19810 PF03466 LysR substrate binding domain CDO28_RS19840 PF10503 Esterase PHB depolymerase CDO28_RS19845 PF03358 NADPH-dependent FMN reductase CDO28_RS19850 PF03960 ArsC family CDO28_RS19855 PF00230 Major intrinsic protein CDO28_RS19890 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDO28_RS19895 PF01979 Amidohydrolase family CDO28_RS19900 PF01156 Inosine-uridine preferring nucleoside hydrolase CDO28_RS19910 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS19915 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS19920 PF00005 ABC transporter CDO28_RS19925 PF02608 ABC transporter substrate-binding protein PnrA-like CDO28_RS19935 PF05199 GMC oxidoreductase CDO28_RS19935 PF00732 GMC oxidoreductase CDO28_RS19940 PF03167 Uracil DNA glycosylase superfamily CDO28_RS19955 PF01070 FMN-dependent dehydrogenase CDO28_RS19965 PF07702 UTRA domain CDO28_RS19965 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS19970 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS19970 PF00107 Zinc-binding dehydrogenase CDO28_RS19975 PF00815 Histidinol dehydrogenase CDO28_RS19980 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS19995 PF08402 TOBE domain CDO28_RS19995 PF00005 ABC transporter CDO28_RS20005 PF00155 Aminotransferase class I and II CDO28_RS20035 PF07690 Major Facilitator Superfamily CDO28_RS20040 PF00672 HAMP domain CDO28_RS20040 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS20040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS20050 PF00072 Response regulator receiver domain CDO28_RS20050 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS20055 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CDO28_RS20060 PF00873 AcrB/AcrD/AcrF family CDO28_RS20115 PF13007 Transposase C of IS166 homeodomain CDO28_RS20115 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS20115 PF03050 Transposase IS66 family CDO28_RS20115 PF13817 IS66 C-terminal element CDO28_RS20135 PF14765 Polyketide synthase dehydratase CDO28_RS20135 PF00550 Phosphopantetheine attachment site CDO28_RS20135 PF00698 Acyl transferase domain CDO28_RS20135 PF16197 Ketoacyl-synthetase C-terminal extension CDO28_RS20135 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS20135 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS20135 PF08659 KR domain CDO28_RS20175 PF13007 Transposase C of IS166 homeodomain CDO28_RS20175 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS20175 PF13817 IS66 C-terminal element CDO28_RS20175 PF03050 Transposase IS66 family CDO28_RS20180 PF00589 Phage integrase family CDO28_RS20180 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS20185 PF00589 Phage integrase family CDO28_RS20190 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS20190 PF00589 Phage integrase family CDO28_RS20195 PF03050 Transposase IS66 family CDO28_RS20195 PF13817 IS66 C-terminal element CDO28_RS20195 PF13007 Transposase C of IS166 homeodomain CDO28_RS20195 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS20205 PF03050 Transposase IS66 family CDO28_RS20205 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS20205 PF13817 IS66 C-terminal element CDO28_RS20205 PF13007 Transposase C of IS166 homeodomain CDO28_RS20210 PF05717 IS66 Orf2 like protein CDO28_RS20215 PF01527 Transposase CDO28_RS20225 PF09378 HAS barrel domain CDO28_RS20225 PF01935 Helicase HerA, central domain CDO28_RS20240 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS20330 PF03466 LysR substrate binding domain CDO28_RS20330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS20335 PF01042 Endoribonuclease L-PSP CDO28_RS20340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO28_RS20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS20345 PF03466 LysR substrate binding domain CDO28_RS20350 PF00912 Transglycosylase CDO28_RS20350 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS20350 PF17092 Penicillin-binding protein OB-like domain CDO28_RS20360 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS20360 PF03717 Penicillin-binding Protein dimerisation domain CDO28_RS20375 PF00360 Phytochrome region CDO28_RS20375 PF00563 EAL domain CDO28_RS20375 PF01590 GAF domain CDO28_RS20375 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS20380 PF00480 ROK family CDO28_RS20390 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS20395 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS20400 PF08402 TOBE domain CDO28_RS20400 PF00005 ABC transporter CDO28_RS20405 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS20405 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS20410 PF18765 Polymerase beta, Nucleotidyltransferase CDO28_RS20410 PF13427 Domain of unknown function (DUF4111) CDO28_RS20425 PF00580 UvrD/REP helicase N-terminal domain CDO28_RS20425 PF13361 UvrD-like helicase C-terminal domain CDO28_RS20435 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS20435 PF00072 Response regulator receiver domain CDO28_RS20440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS20440 PF02702 Osmosensitive K+ channel His kinase sensor domain CDO28_RS20440 PF13493 Domain of unknown function (DUF4118) CDO28_RS20440 PF13492 GAF domain CDO28_RS20440 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS20445 PF02669 K+-transporting ATPase, c chain CDO28_RS20455 PF03814 Potassium-transporting ATPase A subunit CDO28_RS20475 PF00202 Aminotransferase class-III CDO28_RS20480 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDO28_RS20485 PF06276 Ferric iron reductase FhuF-like transporter CDO28_RS20485 PF04183 IucA / IucC family CDO28_RS20495 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CDO28_RS20500 PF04183 IucA / IucC family CDO28_RS20500 PF06276 Ferric iron reductase FhuF-like transporter CDO28_RS20505 PF12833 Helix-turn-helix domain CDO28_RS20510 PF07715 TonB-dependent Receptor Plug Domain CDO28_RS20510 PF00593 TonB dependent receptor CDO28_RS20520 PF03466 LysR substrate binding domain CDO28_RS20520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS20525 PF00106 short chain dehydrogenase CDO28_RS20545 PF01799 [2Fe-2S] binding domain CDO28_RS20545 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS20545 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDO28_RS20550 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS20550 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS20555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS20555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS20560 PF11799 impB/mucB/samB family C-terminal domain CDO28_RS20560 PF11798 IMS family HHH motif CDO28_RS20560 PF00817 impB/mucB/samB family CDO28_RS20575 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS20580 PF01925 Sulfite exporter TauE/SafE CDO28_RS20590 PF01425 Amidase CDO28_RS20595 PF00005 ABC transporter CDO28_RS20600 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS20605 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS20610 PF07969 Amidohydrolase family CDO28_RS20620 PF07690 Major Facilitator Superfamily CDO28_RS20625 PF00141 Peroxidase CDO28_RS20635 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS20640 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS20640 PF00107 Zinc-binding dehydrogenase CDO28_RS20645 PF16326 ABC transporter C-terminal domain CDO28_RS20645 PF12848 ABC transporter CDO28_RS20645 PF00005 ABC transporter CDO28_RS20650 PF08361 MAATS-type transcriptional repressor, C-terminal region CDO28_RS20650 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS20655 PF02566 OsmC-like protein CDO28_RS20660 PF11800 Replication protein C C-terminal region CDO28_RS20660 PF03428 Replication protein C N-terminal domain CDO28_RS20665 PF02195 ParB-like nuclease domain CDO28_RS20665 PF07506 RepB plasmid partitioning protein CDO28_RS20670 PF00376 MerR family regulatory protein CDO28_RS20670 PF13614 AAA domain CDO28_RS20685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS20685 PF00384 Molybdopterin oxidoreductase CDO28_RS20685 PF01568 Molydopterin dinucleotide binding domain CDO28_RS20690 PF00384 Molybdopterin oxidoreductase CDO28_RS20690 PF01568 Molydopterin dinucleotide binding domain CDO28_RS20690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS20695 PF13247 4Fe-4S dicluster domain CDO28_RS20695 PF09163 Formate dehydrogenase N, transmembrane CDO28_RS20700 PF01292 Prokaryotic cytochrome b561 CDO28_RS20705 PF04216 Protein involved in formate dehydrogenase formation CDO28_RS20710 PF12390 Selenocysteine synthase N terminal CDO28_RS20710 PF03841 L-seryl-tRNA selenium transferase CDO28_RS20720 PF03144 Elongation factor Tu domain 2 CDO28_RS20720 PF09106 Elongation factor SelB, winged helix CDO28_RS20720 PF09107 Elongation factor SelB, winged helix CDO28_RS20720 PF09105 Elongation factor SelB, winged helix CDO28_RS20720 PF00009 Elongation factor Tu GTP binding domain CDO28_RS20760 PF01841 Transglutaminase-like superfamily CDO28_RS20770 PF00586 AIR synthase related protein, N-terminal domain CDO28_RS20770 PF02769 AIR synthase related protein, C-terminal domain CDO28_RS20780 PF00413 Matrixin CDO28_RS20780 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CDO28_RS20780 PF08548 Peptidase M10 serralysin C terminal CDO28_RS20785 PF12848 ABC transporter CDO28_RS20785 PF00005 ABC transporter CDO28_RS20790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS20790 PF03466 LysR substrate binding domain CDO28_RS20795 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS20795 PF00107 Zinc-binding dehydrogenase CDO28_RS20805 PF00194 Eukaryotic-type carbonic anhydrase CDO28_RS20820 PF00171 Aldehyde dehydrogenase family CDO28_RS20825 PF00171 Aldehyde dehydrogenase family CDO28_RS20830 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS20830 PF13378 Enolase C-terminal domain-like CDO28_RS20850 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS20850 PF07729 FCD domain CDO28_RS20855 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS20855 PF07729 FCD domain CDO28_RS20860 PF13378 Enolase C-terminal domain-like CDO28_RS20860 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS20865 PF07729 FCD domain CDO28_RS20865 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS20875 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS20880 PF00005 ABC transporter CDO28_RS20895 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS20900 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS20905 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS20910 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS20915 PF00005 ABC transporter CDO28_RS20920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS20920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS20930 PF01042 Endoribonuclease L-PSP CDO28_RS20935 PF07886 BA14K-like protein CDO28_RS20940 PF01063 Amino-transferase class IV CDO28_RS20945 PF03576 Peptidase family S58 CDO28_RS20950 PF03466 LysR substrate binding domain CDO28_RS20950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS20955 PF01979 Amidohydrolase family CDO28_RS20955 PF13382 Adenine deaminase C-terminal domain CDO28_RS20960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS20965 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS20970 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS20970 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS20975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS20975 PF00005 ABC transporter CDO28_RS20980 PF00005 ABC transporter CDO28_RS20980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS20990 PF01850 PIN domain CDO28_RS21000 PF13426 PAS domain CDO28_RS21000 PF07536 HWE histidine kinase CDO28_RS21000 PF08447 PAS fold CDO28_RS21010 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS21015 PF00226 DnaJ domain CDO28_RS21015 PF01556 DnaJ C terminal domain CDO28_RS21025 PF00034 Cytochrome c CDO28_RS21025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO28_RS21040 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS21045 PF00166 Chaperonin 10 Kd subunit CDO28_RS21050 PF00313 'Cold-shock' DNA-binding domain CDO28_RS21060 PF00487 Fatty acid desaturase CDO28_RS21080 PF01594 AI-2E family transporter CDO28_RS21085 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS21085 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS21085 PF13188 PAS domain CDO28_RS21085 PF00563 EAL domain CDO28_RS21095 PF05922 Peptidase inhibitor I9 CDO28_RS21095 PF00082 Subtilase family CDO28_RS21100 PF04542 Sigma-70 region 2 CDO28_RS21100 PF08281 Sigma-70, region 4 CDO28_RS21120 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO28_RS21120 PF03449 Transcription elongation factor, N-terminal CDO28_RS21125 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS21125 PF00501 AMP-binding enzyme CDO28_RS21135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS21145 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS21150 PF07729 FCD domain CDO28_RS21150 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS21155 PF04972 BON domain CDO28_RS21155 PF13629 Pilus formation protein N terminal region CDO28_RS21155 PF00263 Bacterial type II and III secretion system protein CDO28_RS21170 PF08241 Methyltransferase domain CDO28_RS21175 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS21185 PF03976 Polyphosphate kinase 2 (PPK2) CDO28_RS21210 PF02567 Phenazine biosynthesis-like protein CDO28_RS21215 PF00313 'Cold-shock' DNA-binding domain CDO28_RS21220 PF07690 Major Facilitator Superfamily CDO28_RS21270 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS21275 PF00005 ABC transporter CDO28_RS21280 PF13407 Periplasmic binding protein domain CDO28_RS21285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS21285 PF07730 Histidine kinase CDO28_RS21285 PF05384 Sensor protein DegS CDO28_RS21310 PF04962 KduI/IolB family CDO28_RS21315 PF00005 ABC transporter CDO28_RS21320 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS21330 PF00171 Aldehyde dehydrogenase family CDO28_RS21335 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS21335 PF07729 FCD domain CDO28_RS21345 PF07690 Major Facilitator Superfamily CDO28_RS21350 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS21355 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO28_RS21355 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDO28_RS21365 PF01272 Transcription elongation factor, GreA/GreB, C-term CDO28_RS21365 PF14760 Rnk N-terminus CDO28_RS21375 PF00982 Glycosyltransferase family 20 CDO28_RS21380 PF00920 Dehydratase family CDO28_RS21385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS21385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS21390 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS21395 PF02913 FAD linked oxidases, C-terminal domain CDO28_RS21395 PF01565 FAD binding domain CDO28_RS21400 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS21400 PF07729 FCD domain CDO28_RS21410 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS21415 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS21420 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS21440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO28_RS21440 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS21445 PF07859 alpha/beta hydrolase fold CDO28_RS21450 PF00171 Aldehyde dehydrogenase family CDO28_RS21455 PF00465 Iron-containing alcohol dehydrogenase CDO28_RS21460 PF02615 Malate/L-lactate dehydrogenase CDO28_RS21465 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS21465 PF07729 FCD domain CDO28_RS21470 PF00005 ABC transporter CDO28_RS21475 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS21480 PF13407 Periplasmic binding protein domain CDO28_RS21485 PF01965 DJ-1/PfpI family CDO28_RS21505 PF08241 Methyltransferase domain CDO28_RS21515 PF09278 MerR, DNA binding CDO28_RS21515 PF00376 MerR family regulatory protein CDO28_RS21525 PF18480 Domain of unknown function (DUF5615) CDO28_RS21535 PF04255 Protein of unknown function (DUF433) CDO28_RS21560 PF01850 PIN domain CDO28_RS21565 PF09957 Bacterial antitoxin of type II TA system, VapB CDO28_RS21575 PF01965 DJ-1/PfpI family CDO28_RS21590 PF12833 Helix-turn-helix domain CDO28_RS21600 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO28_RS21600 PF05658 Head domain of trimeric autotransporter adhesin CDO28_RS21600 PF03895 YadA-like membrane anchor domain CDO28_RS21600 PF03895 YadA-like membrane anchor domain CDO28_RS21600 PF05658 Head domain of trimeric autotransporter adhesin CDO28_RS21600 PF05662 Coiled stalk of trimeric autotransporter adhesin CDO28_RS21620 PF06776 Invasion associated locus B (IalB) protein CDO28_RS21625 PF00563 EAL domain CDO28_RS21625 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS21625 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS21650 PF08485 Polysaccharide biosynthesis protein C-terminal CDO28_RS21650 PF02719 Polysaccharide biosynthesis protein CDO28_RS21655 PF03466 LysR substrate binding domain CDO28_RS21655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS21660 PF04221 RelB antitoxin CDO28_RS21705 PF00166 Chaperonin 10 Kd subunit CDO28_RS21710 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS21715 PF00595 PDZ domain CDO28_RS21725 PF00005 ABC transporter CDO28_RS21745 PF01434 Peptidase family M41 CDO28_RS21745 PF06480 FtsH Extracellular CDO28_RS21745 PF17862 AAA+ lid domain CDO28_RS21745 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS21775 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS21775 PF14759 Reductase C-terminal CDO28_RS21780 PF13407 Periplasmic binding protein domain CDO28_RS21805 PF00753 Metallo-beta-lactamase superfamily CDO28_RS21855 PF03275 UDP-galactopyranose mutase CDO28_RS21860 PF00534 Glycosyl transferases group 1 CDO28_RS21865 PF00534 Glycosyl transferases group 1 CDO28_RS21865 PF13439 Glycosyltransferase Family 4 CDO28_RS21890 PF00561 alpha/beta hydrolase fold CDO28_RS21905 PF02311 AraC-like ligand binding domain CDO28_RS21905 PF12833 Helix-turn-helix domain CDO28_RS21910 PF13847 Methyltransferase domain CDO28_RS21915 PF04221 RelB antitoxin CDO28_RS21935 PF13581 Histidine kinase-like ATPase domain CDO28_RS21935 PF07536 HWE histidine kinase CDO28_RS21935 PF13426 PAS domain CDO28_RS21940 PF06745 KaiC CDO28_RS21950 PF13458 Periplasmic binding protein CDO28_RS21955 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS21955 PF00072 Response regulator receiver domain CDO28_RS21960 PF00005 ABC transporter CDO28_RS21965 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22035 PF03264 NapC/NirT cytochrome c family, N-terminal region CDO28_RS22040 PF05035 2-keto-3-deoxy-galactonokinase CDO28_RS22050 PF13378 Enolase C-terminal domain-like CDO28_RS22050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS22060 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22065 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22070 PF17912 MalK OB fold domain CDO28_RS22070 PF00005 ABC transporter CDO28_RS22075 PF17912 MalK OB fold domain CDO28_RS22075 PF00005 ABC transporter CDO28_RS22080 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS22085 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO28_RS22120 PF00455 DeoR C terminal sensor domain CDO28_RS22120 PF08220 DeoR-like helix-turn-helix domain CDO28_RS22135 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22140 PF00872 Transposase, Mutator family CDO28_RS22150 PF00288 GHMP kinases N terminal domain CDO28_RS22185 PF00665 Integrase core domain CDO28_RS22195 PF01548 Transposase CDO28_RS22195 PF02371 Transposase IS116/IS110/IS902 family CDO28_RS22205 PF05443 ROS/MUCR transcriptional regulator protein CDO28_RS22210 PF01261 Xylose isomerase-like TIM barrel CDO28_RS22215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS22215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS22220 PF04794 YdjC-like protein CDO28_RS22225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS22225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS22230 PF13407 Periplasmic binding protein domain CDO28_RS22235 PF00155 Aminotransferase class I and II CDO28_RS22235 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS22245 PF00355 Rieske [2Fe-2S] domain CDO28_RS22250 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS22250 PF14759 Reductase C-terminal CDO28_RS22255 PF02548 Ketopantoate hydroxymethyltransferase CDO28_RS22260 PF00551 Formyl transferase CDO28_RS22270 PF00732 GMC oxidoreductase CDO28_RS22270 PF05199 GMC oxidoreductase CDO28_RS22280 PF07690 Major Facilitator Superfamily CDO28_RS22285 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO28_RS22285 PF06988 NifT/FixU protein CDO28_RS22290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO28_RS22290 PF06988 NifT/FixU protein CDO28_RS22295 PF00701 Dihydrodipicolinate synthetase family CDO28_RS22300 PF00171 Aldehyde dehydrogenase family CDO28_RS22320 PF04963 Sigma-54 factor, core binding domain CDO28_RS22320 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO28_RS22320 PF04552 Sigma-54, DNA binding domain CDO28_RS22325 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO28_RS22325 PF04963 Sigma-54 factor, core binding domain CDO28_RS22325 PF04552 Sigma-54, DNA binding domain CDO28_RS22335 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDO28_RS22335 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDO28_RS22340 PF01842 ACT domain CDO28_RS22340 PF00696 Amino acid kinase family CDO28_RS22340 PF13840 ACT domain CDO28_RS22350 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDO28_RS22350 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO28_RS22360 PF01513 ATP-NAD kinase CDO28_RS22365 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS22370 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS22375 PF00166 Chaperonin 10 Kd subunit CDO28_RS22385 PF03466 LysR substrate binding domain CDO28_RS22385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS22395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS22395 PF00005 ABC transporter CDO28_RS22400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS22405 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22410 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS22410 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22415 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO28_RS22415 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO28_RS22430 PF13817 IS66 C-terminal element CDO28_RS22430 PF03050 Transposase IS66 family CDO28_RS22430 PF13005 zinc-finger binding domain of transposase IS66 CDO28_RS22430 PF13007 Transposase C of IS166 homeodomain CDO28_RS22455 PF00696 Amino acid kinase family CDO28_RS22460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS22460 PF18603 L-amino acid ligase C-terminal domain 2 CDO28_RS22470 PF00668 Condensation domain CDO28_RS22470 PF00501 AMP-binding enzyme CDO28_RS22470 PF00975 Thioesterase domain CDO28_RS22470 PF00550 Phosphopantetheine attachment site CDO28_RS22470 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS22480 PF13276 HTH-like domain CDO28_RS22480 PF00665 Integrase core domain CDO28_RS22490 PF18603 L-amino acid ligase C-terminal domain 2 CDO28_RS22490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS22495 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS22510 PF18603 L-amino acid ligase C-terminal domain 2 CDO28_RS22510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS22525 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS22525 PF00072 Response regulator receiver domain CDO28_RS22530 PF13545 Crp-like helix-turn-helix domain CDO28_RS22530 PF00027 Cyclic nucleotide-binding domain CDO28_RS22535 PF00384 Molybdopterin oxidoreductase CDO28_RS22535 PF01568 Molydopterin dinucleotide binding domain CDO28_RS22535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS22540 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CDO28_RS22545 PF03264 NapC/NirT cytochrome c family, N-terminal region CDO28_RS22555 PF00989 PAS fold CDO28_RS22555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS22555 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS22560 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS22560 PF00072 Response regulator receiver domain CDO28_RS22570 PF00027 Cyclic nucleotide-binding domain CDO28_RS22570 PF13545 Crp-like helix-turn-helix domain CDO28_RS22580 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS22595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO28_RS22595 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CDO28_RS22600 PF12801 4Fe-4S binding domain CDO28_RS22600 PF13746 4Fe-4S dicluster domain CDO28_RS22600 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CDO28_RS22605 PF05751 FixH CDO28_RS22615 PF03597 Cytochrome oxidase maturation protein cbb3-type CDO28_RS22650 PF03577 Peptidase family C69 CDO28_RS22660 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22665 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS22665 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22670 PF00005 ABC transporter CDO28_RS22670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS22675 PF00005 ABC transporter CDO28_RS22675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS22690 PF01527 Transposase CDO28_RS22695 PF01527 Transposase CDO28_RS22705 PF00665 Integrase core domain CDO28_RS22730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS22730 PF03466 LysR substrate binding domain CDO28_RS22735 PF01613 Flavin reductase like domain CDO28_RS22740 PF00989 PAS fold CDO28_RS22740 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS22740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS22745 PF00072 Response regulator receiver domain CDO28_RS22745 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS22755 PF13545 Crp-like helix-turn-helix domain CDO28_RS22755 PF00027 Cyclic nucleotide-binding domain CDO28_RS22765 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS22780 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CDO28_RS22780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO28_RS22790 PF12464 Maltose acetyltransferase CDO28_RS22790 PF14602 Hexapeptide repeat of succinyl-transferase CDO28_RS22805 PF00884 Sulfatase CDO28_RS22820 PF00313 'Cold-shock' DNA-binding domain CDO28_RS22845 PF01235 Sodium:alanine symporter family CDO28_RS22860 PF07729 FCD domain CDO28_RS22860 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS22875 PF12697 Alpha/beta hydrolase family CDO28_RS22880 PF01613 Flavin reductase like domain CDO28_RS22885 PF00296 Luciferase-like monooxygenase CDO28_RS22890 PF00171 Aldehyde dehydrogenase family CDO28_RS22905 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22910 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS22915 PF00005 ABC transporter CDO28_RS22915 PF08402 TOBE domain CDO28_RS22920 PF00171 Aldehyde dehydrogenase family CDO28_RS22925 PF01527 Transposase CDO28_RS22940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO28_RS22940 PF06988 NifT/FixU protein CDO28_RS22945 PF12838 4Fe-4S dicluster domain CDO28_RS22950 PF04055 Radical SAM superfamily CDO28_RS22950 PF02579 Dinitrogenase iron-molybdenum cofactor CDO28_RS22955 PF00158 Sigma-54 interaction domain CDO28_RS22955 PF02954 Bacterial regulatory protein, Fis family CDO28_RS22970 PF01012 Electron transfer flavoprotein domain CDO28_RS22970 PF00766 Electron transfer flavoprotein FAD-binding domain CDO28_RS22975 PF01012 Electron transfer flavoprotein domain CDO28_RS22990 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO28_RS22990 PF04963 Sigma-54 factor, core binding domain CDO28_RS22990 PF04552 Sigma-54, DNA binding domain CDO28_RS22995 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDO28_RS22995 PF04963 Sigma-54 factor, core binding domain CDO28_RS22995 PF04552 Sigma-54, DNA binding domain CDO28_RS23005 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CDO28_RS23010 PF00148 Nitrogenase component 1 type Oxidoreductase CDO28_RS23015 PF00148 Nitrogenase component 1 type Oxidoreductase CDO28_RS23015 PF11844 Domain of unknown function (DUF3364) CDO28_RS23020 PF00148 Nitrogenase component 1 type Oxidoreductase CDO28_RS23025 PF02579 Dinitrogenase iron-molybdenum cofactor CDO28_RS23030 PF05082 Rop-like CDO28_RS23035 PF13237 4Fe-4S dicluster domain CDO28_RS23050 PF11089 Exopolysaccharide production repressor CDO28_RS23055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS23085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS23085 PF03466 LysR substrate binding domain CDO28_RS23095 PF00685 Sulfotransferase domain CDO28_RS23100 PF00550 Phosphopantetheine attachment site CDO28_RS23105 PF00109 Beta-ketoacyl synthase, N-terminal domain CDO28_RS23105 PF02801 Beta-ketoacyl synthase, C-terminal domain CDO28_RS23120 PF01507 Phosphoadenosine phosphosulfate reductase family CDO28_RS23125 PF00009 Elongation factor Tu GTP binding domain CDO28_RS23140 PF01061 ABC-2 type transporter CDO28_RS23145 PF00005 ABC transporter CDO28_RS23150 PF00535 Glycosyl transferase family 2 CDO28_RS23155 PF01522 Polysaccharide deacetylase CDO28_RS23160 PF02474 Nodulation protein A (NodA) CDO28_RS23165 PF03466 LysR substrate binding domain CDO28_RS23165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS23175 PF00148 Nitrogenase component 1 type Oxidoreductase CDO28_RS23180 PF01575 MaoC like domain CDO28_RS23185 PF00873 AcrB/AcrD/AcrF family CDO28_RS23190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS23195 PF01380 SIS domain CDO28_RS23210 PF11799 impB/mucB/samB family C-terminal domain CDO28_RS23210 PF00817 impB/mucB/samB family CDO28_RS23210 PF11798 IMS family HHH motif CDO28_RS23215 PF11799 impB/mucB/samB family C-terminal domain CDO28_RS23215 PF00817 impB/mucB/samB family CDO28_RS23220 PF00817 impB/mucB/samB family CDO28_RS23220 PF11799 impB/mucB/samB family C-terminal domain CDO28_RS23220 PF11798 IMS family HHH motif CDO28_RS23235 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDO28_RS23235 PF14579 Helix-hairpin-helix motif CDO28_RS23235 PF02811 PHP domain CDO28_RS23235 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDO28_RS23245 PF07929 Plasmid pRiA4b ORF-3-like protein CDO28_RS23250 PF03230 Antirestriction protein CDO28_RS23325 PF02534 Type IV secretory system Conjugative DNA transfer CDO28_RS23340 PF17841 BID domain of Bartonella effector protein (Bep) CDO28_RS23340 PF03389 MobA/MobL family CDO28_RS23340 PF01443 Viral (Superfamily 1) RNA helicase CDO28_RS23350 PF00924 Mechanosensitive ion channel CDO28_RS23375 PF00072 Response regulator receiver domain CDO28_RS23375 PF08448 PAS fold CDO28_RS23375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS23375 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS23375 PF13426 PAS domain CDO28_RS23380 PF00072 Response regulator receiver domain CDO28_RS23380 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS23385 PF00072 Response regulator receiver domain CDO28_RS23385 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS23390 PF00884 Sulfatase CDO28_RS23400 PF07687 Peptidase dimerisation domain CDO28_RS23400 PF01546 Peptidase family M20/M25/M40 CDO28_RS23405 PF09587 Bacterial capsule synthesis protein PGA_cap CDO28_RS23410 PF00005 ABC transporter CDO28_RS23410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS23415 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS23415 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS23420 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS23425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS23455 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS23455 PF03472 Autoinducer binding domain CDO28_RS23465 PF00765 Autoinducer synthase CDO28_RS23480 PF03466 LysR substrate binding domain CDO28_RS23480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS23490 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS23490 PF03472 Autoinducer binding domain CDO28_RS23505 PF00665 Integrase core domain CDO28_RS23505 PF13936 Helix-turn-helix domain CDO28_RS23530 PF00106 short chain dehydrogenase CDO28_RS23540 PF01970 Tripartite tricarboxylate transporter TctA family CDO28_RS23555 PF00171 Aldehyde dehydrogenase family CDO28_RS23565 PF03466 LysR substrate binding domain CDO28_RS23565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS23570 PF00171 Aldehyde dehydrogenase family CDO28_RS23580 PF03328 HpcH/HpaI aldolase/citrate lyase family CDO28_RS23590 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO28_RS23595 PF03401 Tripartite tricarboxylate transporter family receptor CDO28_RS23605 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO28_RS23615 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS23620 PF00005 ABC transporter CDO28_RS23630 PF00753 Metallo-beta-lactamase superfamily CDO28_RS23630 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDO28_RS23635 PF00034 Cytochrome c CDO28_RS23640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS23645 PF01799 [2Fe-2S] binding domain CDO28_RS23645 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS23650 PF00149 Calcineurin-like phosphoesterase CDO28_RS23650 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDO28_RS23660 PF00355 Rieske [2Fe-2S] domain CDO28_RS23670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS23670 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS23675 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS23675 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS23680 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS23680 PF01799 [2Fe-2S] binding domain CDO28_RS23680 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDO28_RS23685 PF00248 Aldo/keto reductase family CDO28_RS23695 PF08450 SMP-30/Gluconolactonase/LRE-like region CDO28_RS23700 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS23725 PF03466 LysR substrate binding domain CDO28_RS23725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS23735 PF07690 Major Facilitator Superfamily CDO28_RS23750 PF00248 Aldo/keto reductase family CDO28_RS23760 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS23795 PF00484 Carbonic anhydrase CDO28_RS23805 PF00072 Response regulator receiver domain CDO28_RS23805 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS23810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS23810 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS23810 PF00672 HAMP domain CDO28_RS23820 PF00034 Cytochrome c CDO28_RS23825 PF01799 [2Fe-2S] binding domain CDO28_RS23825 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS23830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS23830 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS23840 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS23855 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS23855 PF00107 Zinc-binding dehydrogenase CDO28_RS23860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS23860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS23870 PF02805 Metal binding domain of Ada CDO28_RS23870 PF12833 Helix-turn-helix domain CDO28_RS23875 PF00106 short chain dehydrogenase CDO28_RS23885 PF00753 Metallo-beta-lactamase superfamily CDO28_RS23885 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDO28_RS23890 PF00561 alpha/beta hydrolase fold CDO28_RS23900 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS23900 PF00107 Zinc-binding dehydrogenase CDO28_RS23905 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS23910 PF00106 short chain dehydrogenase CDO28_RS23925 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS23930 PF03796 DnaB-like helicase C terminal domain CDO28_RS23945 PF07690 Major Facilitator Superfamily CDO28_RS23950 PF01425 Amidase CDO28_RS23955 PF03466 LysR substrate binding domain CDO28_RS23955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24015 PF03466 LysR substrate binding domain CDO28_RS24015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24020 PF00248 Aldo/keto reductase family CDO28_RS24045 PF03466 LysR substrate binding domain CDO28_RS24045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24060 PF03264 NapC/NirT cytochrome c family, N-terminal region CDO28_RS24065 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CDO28_RS24070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS24070 PF00384 Molybdopterin oxidoreductase CDO28_RS24070 PF01568 Molydopterin dinucleotide binding domain CDO28_RS24085 PF06796 Periplasmic nitrate reductase protein NapE CDO28_RS24090 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS24095 PF07690 Major Facilitator Superfamily CDO28_RS24100 PF00437 Type II/IV secretion system protein CDO28_RS24105 PF03743 Bacterial conjugation TrbI-like protein CDO28_RS24110 PF03524 Conjugal transfer protein CDO28_RS24115 PF04335 VirB8 protein CDO28_RS24125 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CDO28_RS24135 PF07996 Type IV secretion system proteins CDO28_RS24140 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CDO28_RS24145 PF05101 Type IV secretory pathway, VirB3-like protein CDO28_RS24150 PF04956 TrbC/VIRB2 family CDO28_RS24180 PF00561 alpha/beta hydrolase fold CDO28_RS24185 PF00083 Sugar (and other) transporter CDO28_RS24190 PF00557 Metallopeptidase family M24 CDO28_RS24200 PF09370 Phosphoenolpyruvate hydrolase-like CDO28_RS24220 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24225 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24235 PF00005 ABC transporter CDO28_RS24235 PF03459 TOBE domain CDO28_RS24235 PF17912 MalK OB fold domain CDO28_RS24240 PF03459 TOBE domain CDO28_RS24240 PF00005 ABC transporter CDO28_RS24240 PF17912 MalK OB fold domain CDO28_RS24245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS24245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS24250 PF07729 FCD domain CDO28_RS24250 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS24255 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS24255 PF13378 Enolase C-terminal domain-like CDO28_RS24260 PF01261 Xylose isomerase-like TIM barrel CDO28_RS24265 PF01261 Xylose isomerase-like TIM barrel CDO28_RS24290 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24295 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24325 PF00005 ABC transporter CDO28_RS24325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS24330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS24330 PF00005 ABC transporter CDO28_RS24335 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24335 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS24340 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS24350 PF01425 Amidase CDO28_RS24360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS24365 PF04324 BFD-like [2Fe-2S] binding domain CDO28_RS24365 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS24375 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS24375 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS24375 PF16350 FAD dependent oxidoreductase central domain CDO28_RS24375 PF01266 FAD dependent oxidoreductase CDO28_RS24380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24380 PF03466 LysR substrate binding domain CDO28_RS24385 PF00766 Electron transfer flavoprotein FAD-binding domain CDO28_RS24385 PF01012 Electron transfer flavoprotein domain CDO28_RS24390 PF01012 Electron transfer flavoprotein domain CDO28_RS24405 PF00106 short chain dehydrogenase CDO28_RS24410 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS24410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS24410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS24415 PF00248 Aldo/keto reductase family CDO28_RS24420 PF05161 MOFRL family CDO28_RS24420 PF13660 Domain of unknown function (DUF4147) CDO28_RS24425 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS24430 PF01144 Coenzyme A transferase CDO28_RS24435 PF00248 Aldo/keto reductase family CDO28_RS24450 PF00732 GMC oxidoreductase CDO28_RS24450 PF05199 GMC oxidoreductase CDO28_RS24455 PF00171 Aldehyde dehydrogenase family CDO28_RS24460 PF00107 Zinc-binding dehydrogenase CDO28_RS24460 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS24465 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS24470 PF00005 ABC transporter CDO28_RS24475 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS24485 PF17938 Tetracyclin repressor-like, C-terminal domain CDO28_RS24485 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS24500 PF00005 ABC transporter CDO28_RS24500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS24505 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS24505 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24510 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS24520 PF00701 Dihydrodipicolinate synthetase family CDO28_RS24525 PF07729 FCD domain CDO28_RS24525 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS24535 PF07690 Major Facilitator Superfamily CDO28_RS24545 PF02803 Thiolase, C-terminal domain CDO28_RS24545 PF00108 Thiolase, N-terminal domain CDO28_RS24550 PF00106 short chain dehydrogenase CDO28_RS24555 PF12833 Helix-turn-helix domain CDO28_RS24555 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDO28_RS24570 PF02615 Malate/L-lactate dehydrogenase CDO28_RS24575 PF13378 Enolase C-terminal domain-like CDO28_RS24575 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS24580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDO28_RS24585 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24590 PF00571 CBS domain CDO28_RS24590 PF00005 ABC transporter CDO28_RS24595 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS24600 PF00857 Isochorismatase family CDO28_RS24605 PF00557 Metallopeptidase family M24 CDO28_RS24610 PF12833 Helix-turn-helix domain CDO28_RS24615 PF06253 Trimethylamine methyltransferase (MTTB) CDO28_RS24620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24620 PF03466 LysR substrate binding domain CDO28_RS24625 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS24625 PF01266 FAD dependent oxidoreductase CDO28_RS24625 PF16350 FAD dependent oxidoreductase central domain CDO28_RS24625 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS24635 PF00034 Cytochrome c CDO28_RS24640 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS24645 PF01799 [2Fe-2S] binding domain CDO28_RS24645 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS24650 PF03466 LysR substrate binding domain CDO28_RS24650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24660 PF00266 Aminotransferase class-V CDO28_RS24665 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS24670 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS24670 PF00355 Rieske [2Fe-2S] domain CDO28_RS24685 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS24685 PF07729 FCD domain CDO28_RS24690 PF02608 ABC transporter substrate-binding protein PnrA-like CDO28_RS24695 PF00005 ABC transporter CDO28_RS24700 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS24705 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS24715 PF00146 NADH dehydrogenase CDO28_RS24720 PF12838 4Fe-4S dicluster domain CDO28_RS24730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS24730 PF00384 Molybdopterin oxidoreductase CDO28_RS24730 PF01568 Molydopterin dinucleotide binding domain CDO28_RS24730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO28_RS24730 PF12838 4Fe-4S dicluster domain CDO28_RS24735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDO28_RS24735 PF10531 SLBB domain CDO28_RS24735 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDO28_RS24745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDO28_RS24750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDO28_RS24755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDO28_RS24760 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDO28_RS24765 PF00361 Proton-conducting membrane transporter CDO28_RS24770 PF00361 Proton-conducting membrane transporter CDO28_RS24770 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CDO28_RS24775 PF00361 Proton-conducting membrane transporter CDO28_RS24785 PF00361 Proton-conducting membrane transporter CDO28_RS24790 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDO28_RS24795 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDO28_RS24805 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS24805 PF08447 PAS fold CDO28_RS24805 PF08448 PAS fold CDO28_RS24805 PF00563 EAL domain CDO28_RS24810 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS24810 PF00072 Response regulator receiver domain CDO28_RS24815 PF03705 CheR methyltransferase, all-alpha domain CDO28_RS24815 PF01739 CheR methyltransferase, SAM binding domain CDO28_RS24825 PF00672 HAMP domain CDO28_RS24825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDO28_RS24825 PF02743 Cache domain CDO28_RS24830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS24830 PF02895 Signal transducing histidine kinase, homodimeric domain CDO28_RS24830 PF01627 Hpt domain CDO28_RS24830 PF01584 CheW-like domain CDO28_RS24835 PF01339 CheB methylesterase CDO28_RS24850 PF00437 Type II/IV secretion system protein CDO28_RS24865 PF10609 NUBPL iron-transfer P-loop NTPase CDO28_RS24890 PF00924 Mechanosensitive ion channel CDO28_RS24890 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDO28_RS24890 PF12795 Mechanosensitive ion channel porin domain CDO28_RS24895 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS24910 PF01527 Transposase CDO28_RS24915 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CDO28_RS24915 PF00722 Glycosyl hydrolases family 16 CDO28_RS24935 PF02661 Fic/DOC family CDO28_RS24935 PF12728 Helix-turn-helix domain CDO28_RS24940 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS24940 PF13191 AAA ATPase domain CDO28_RS24945 PF00355 Rieske [2Fe-2S] domain CDO28_RS24970 PF00999 Sodium/hydrogen exchanger family CDO28_RS24970 PF02254 TrkA-N domain CDO28_RS24975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24975 PF03466 LysR substrate binding domain CDO28_RS24980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO28_RS24995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS24995 PF03466 LysR substrate binding domain CDO28_RS25015 PF03466 LysR substrate binding domain CDO28_RS25015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS25050 PF00583 Acetyltransferase (GNAT) family CDO28_RS25055 PF00873 AcrB/AcrD/AcrF family CDO28_RS25060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS25070 PF13520 Amino acid permease CDO28_RS25075 PF13520 Amino acid permease CDO28_RS25105 PF01594 AI-2E family transporter CDO28_RS25145 PF00884 Sulfatase CDO28_RS25150 PF13493 Domain of unknown function (DUF4118) CDO28_RS25150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS25150 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS25150 PF00989 PAS fold CDO28_RS25150 PF08447 PAS fold CDO28_RS25150 PF13426 PAS domain CDO28_RS25155 PF00072 Response regulator receiver domain CDO28_RS25155 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS25160 PF00072 Response regulator receiver domain CDO28_RS25160 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS25185 PF01527 Transposase CDO28_RS25210 PF06772 Bacterial low temperature requirement A protein (LtrA) CDO28_RS25215 PF05443 ROS/MUCR transcriptional regulator protein CDO28_RS25220 PF00491 Arginase family CDO28_RS25230 PF01979 Amidohydrolase family CDO28_RS25230 PF13382 Adenine deaminase C-terminal domain CDO28_RS25235 PF00860 Permease family CDO28_RS25240 PF01979 Amidohydrolase family CDO28_RS25240 PF13382 Adenine deaminase C-terminal domain CDO28_RS25245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS25245 PF03466 LysR substrate binding domain CDO28_RS25255 PF00857 Isochorismatase family CDO28_RS25260 PF12833 Helix-turn-helix domain CDO28_RS25260 PF02311 AraC-like ligand binding domain CDO28_RS25265 PF13977 BetI-type transcriptional repressor, C-terminal CDO28_RS25265 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS25270 PF00561 alpha/beta hydrolase fold CDO28_RS25280 PF00171 Aldehyde dehydrogenase family CDO28_RS25295 PF00042 Globin CDO28_RS25295 PF00970 Oxidoreductase FAD-binding domain CDO28_RS25295 PF00175 Oxidoreductase NAD-binding domain CDO28_RS25300 PF03466 LysR substrate binding domain CDO28_RS25300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS25305 PF03601 Conserved hypothetical protein 698 CDO28_RS25315 PF08241 Methyltransferase domain CDO28_RS25325 PF00005 ABC transporter CDO28_RS25330 PF01032 FecCD transport family CDO28_RS25335 PF01032 FecCD transport family CDO28_RS25365 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS25370 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS25375 PF08402 TOBE domain CDO28_RS25375 PF00005 ABC transporter CDO28_RS25390 PF07729 FCD domain CDO28_RS25390 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS25400 PF00202 Aminotransferase class-III CDO28_RS25465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS25465 PF03466 LysR substrate binding domain CDO28_RS25470 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS25470 PF13191 AAA ATPase domain CDO28_RS25515 PF02705 K+ potassium transporter CDO28_RS25545 PF00561 alpha/beta hydrolase fold CDO28_RS25550 PF00753 Metallo-beta-lactamase superfamily CDO28_RS25550 PF10996 Beta-Casp domain CDO28_RS25550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDO28_RS25555 PF05977 Transmembrane secretion effector CDO28_RS25565 PF07969 Amidohydrolase family CDO28_RS25575 PF00857 Isochorismatase family CDO28_RS25585 PF02311 AraC-like ligand binding domain CDO28_RS25585 PF12833 Helix-turn-helix domain CDO28_RS25590 PF12833 Helix-turn-helix domain CDO28_RS25590 PF02311 AraC-like ligand binding domain CDO28_RS25615 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS25625 PF01546 Peptidase family M20/M25/M40 CDO28_RS25625 PF07687 Peptidase dimerisation domain CDO28_RS25630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS25640 PF00171 Aldehyde dehydrogenase family CDO28_RS25645 PF00180 Isocitrate/isopropylmalate dehydrogenase CDO28_RS25650 PF00171 Aldehyde dehydrogenase family CDO28_RS25655 PF01266 FAD dependent oxidoreductase CDO28_RS25665 PF13673 Acetyltransferase (GNAT) domain CDO28_RS25665 PF18014 Acetyltransferase (GNAT) domain CDO28_RS25670 PF00202 Aminotransferase class-III CDO28_RS25680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS25685 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS25690 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS25690 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS25695 PF00005 ABC transporter CDO28_RS25695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS25700 PF01037 Lrp/AsnC ligand binding domain CDO28_RS25705 PF01266 FAD dependent oxidoreductase CDO28_RS25715 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDO28_RS25720 PF13291 ACT domain CDO28_RS25720 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS25725 PF00589 Phage integrase family CDO28_RS25725 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS25740 PF06594 Haemolysin-type calcium binding protein related domain CDO28_RS25740 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CDO28_RS25745 PF00664 ABC transporter transmembrane region CDO28_RS25745 PF00005 ABC transporter CDO28_RS25745 PF03412 Peptidase C39 family CDO28_RS25755 PF00589 Phage integrase family CDO28_RS25755 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS25765 PF01032 FecCD transport family CDO28_RS25770 PF01032 FecCD transport family CDO28_RS25775 PF00005 ABC transporter CDO28_RS25785 PF00589 Phage integrase family CDO28_RS25785 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS25820 PF01810 LysE type translocator CDO28_RS25860 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS25875 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS25880 PF00155 Aminotransferase class I and II CDO28_RS25885 PF02630 SCO1/SenC CDO28_RS25910 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDO28_RS25910 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS25910 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CDO28_RS25930 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS25930 PF00155 Aminotransferase class I and II CDO28_RS25940 PF02627 Carboxymuconolactone decarboxylase family CDO28_RS25955 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS25965 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS25970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS25970 PF03466 LysR substrate binding domain CDO28_RS25975 PF01641 SelR domain CDO28_RS25980 PF01625 Peptide methionine sulfoxide reductase CDO28_RS25985 PF01546 Peptidase family M20/M25/M40 CDO28_RS25985 PF07687 Peptidase dimerisation domain CDO28_RS25995 PF03401 Tripartite tricarboxylate transporter family receptor CDO28_RS26000 PF13298 DNA polymerase Ligase (LigD) CDO28_RS26000 PF01068 ATP dependent DNA ligase domain CDO28_RS26000 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS26025 PF01381 Helix-turn-helix CDO28_RS26030 PF00565 Staphylococcal nuclease homologue CDO28_RS26070 PF00550 Phosphopantetheine attachment site CDO28_RS26085 PF01443 Viral (Superfamily 1) RNA helicase CDO28_RS26085 PF17841 BID domain of Bartonella effector protein (Bep) CDO28_RS26085 PF03389 MobA/MobL family CDO28_RS26095 PF02515 CoA-transferase family III CDO28_RS26105 PF01183 Glycosyl hydrolases family 25 CDO28_RS26110 PF00583 Acetyltransferase (GNAT) family CDO28_RS26120 PF14698 Argininosuccinate lyase C-terminal CDO28_RS26120 PF00206 Lyase CDO28_RS26125 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26130 PF00005 ABC transporter CDO28_RS26140 PF03972 MmgE/PrpD family CDO28_RS26160 PF01614 Bacterial transcriptional regulator CDO28_RS26160 PF09339 IclR helix-turn-helix domain CDO28_RS26170 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26175 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26180 PF00005 ABC transporter CDO28_RS26180 PF17912 MalK OB fold domain CDO28_RS26180 PF03459 TOBE domain CDO28_RS26185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS26185 PF13378 Enolase C-terminal domain-like CDO28_RS26190 PF05336 L-rhamnose mutarotase CDO28_RS26210 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDO28_RS26215 PF13378 Enolase C-terminal domain-like CDO28_RS26215 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS26225 PF03861 ANTAR domain CDO28_RS26225 PF08376 Nitrate and nitrite sensing CDO28_RS26235 PF01381 Helix-turn-helix CDO28_RS26255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS26255 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS26255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS26260 PF01039 Carboxyl transferase domain CDO28_RS26270 PF00364 Biotin-requiring enzyme CDO28_RS26270 PF00289 Biotin carboxylase, N-terminal domain CDO28_RS26270 PF02785 Biotin carboxylase C-terminal domain CDO28_RS26270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS26275 PF00682 HMGL-like CDO28_RS26290 PF08808 RES domain CDO28_RS26295 PF02913 FAD linked oxidases, C-terminal domain CDO28_RS26295 PF01565 FAD binding domain CDO28_RS26300 PF12857 TOBE-like domain CDO28_RS26300 PF00005 ABC transporter CDO28_RS26305 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26310 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26320 PF14031 Putative serine dehydratase domain CDO28_RS26325 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS26330 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26335 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26340 PF00005 ABC transporter CDO28_RS26345 PF01042 Endoribonuclease L-PSP CDO28_RS26355 PF17912 MalK OB fold domain CDO28_RS26355 PF03459 TOBE domain CDO28_RS26355 PF00005 ABC transporter CDO28_RS26360 PF00294 pfkB family carbohydrate kinase CDO28_RS26370 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26375 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26385 PF01547 Bacterial extracellular solute-binding protein CDO28_RS26390 PF00480 ROK family CDO28_RS26395 PF01507 Phosphoadenosine phosphosulfate reductase family CDO28_RS26400 PF00009 Elongation factor Tu GTP binding domain CDO28_RS26405 PF00459 Inositol monophosphatase family CDO28_RS26415 PF01820 D-ala D-ala ligase N-terminus CDO28_RS26415 PF07478 D-ala D-ala ligase C-terminus CDO28_RS26420 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS26440 PF00534 Glycosyl transferases group 1 CDO28_RS26450 PF02719 Polysaccharide biosynthesis protein CDO28_RS26455 PF02911 Formyl transferase, C-terminal domain CDO28_RS26455 PF00551 Formyl transferase CDO28_RS26485 PF13439 Glycosyltransferase Family 4 CDO28_RS26485 PF00534 Glycosyl transferases group 1 CDO28_RS26500 PF02563 Polysaccharide biosynthesis/export protein CDO28_RS26505 PF02397 Bacterial sugar transferase CDO28_RS26515 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO28_RS26525 PF00534 Glycosyl transferases group 1 CDO28_RS26525 PF13439 Glycosyltransferase Family 4 CDO28_RS26530 PF00924 Mechanosensitive ion channel CDO28_RS26535 PF13439 Glycosyltransferase Family 4 CDO28_RS26535 PF00534 Glycosyl transferases group 1 CDO28_RS26545 PF00753 Metallo-beta-lactamase superfamily CDO28_RS26545 PF12706 Beta-lactamase superfamily domain CDO28_RS26555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDO28_RS26555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDO28_RS26555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDO28_RS26570 PF00005 ABC transporter CDO28_RS26570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS26575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS26580 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26585 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS26585 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26595 PF13439 Glycosyltransferase Family 4 CDO28_RS26595 PF00534 Glycosyl transferases group 1 CDO28_RS26610 PF00664 ABC transporter transmembrane region CDO28_RS26610 PF00005 ABC transporter CDO28_RS26615 PF13302 Acetyltransferase (GNAT) domain CDO28_RS26615 PF00027 Cyclic nucleotide-binding domain CDO28_RS26625 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS26635 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26640 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26645 PF08402 TOBE domain CDO28_RS26645 PF00005 ABC transporter CDO28_RS26655 PF13382 Adenine deaminase C-terminal domain CDO28_RS26655 PF01979 Amidohydrolase family CDO28_RS26660 PF07687 Peptidase dimerisation domain CDO28_RS26660 PF01546 Peptidase family M20/M25/M40 CDO28_RS26665 PF00156 Phosphoribosyl transferase domain CDO28_RS26670 PF00860 Permease family CDO28_RS26680 PF03561 Allantoicase repeat CDO28_RS26685 PF01014 Uricase CDO28_RS26685 PF09349 OHCU decarboxylase CDO28_RS26690 PF00576 HIUase/Transthyretin family CDO28_RS26695 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS26695 PF01799 [2Fe-2S] binding domain CDO28_RS26700 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS26700 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS26710 PF01638 HxlR-like helix-turn-helix CDO28_RS26715 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS26715 PF00107 Zinc-binding dehydrogenase CDO28_RS26720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS26720 PF03466 LysR substrate binding domain CDO28_RS26730 PF01979 Amidohydrolase family CDO28_RS26735 PF00011 Hsp20/alpha crystallin family CDO28_RS26740 PF00011 Hsp20/alpha crystallin family CDO28_RS26750 PF06832 Penicillin-Binding Protein C-terminus Family CDO28_RS26750 PF00912 Transglycosylase CDO28_RS26750 PF00905 Penicillin binding protein transpeptidase domain CDO28_RS26755 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CDO28_RS26755 PF00207 Alpha-2-macroglobulin family CDO28_RS26755 PF07703 Alpha-2-macroglobulin bait region domain CDO28_RS26755 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CDO28_RS26755 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CDO28_RS26755 PF17962 Bacterial macroglobulin domain 6 CDO28_RS26755 PF01835 MG2 domain CDO28_RS26755 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CDO28_RS26760 PF00455 DeoR C terminal sensor domain CDO28_RS26760 PF08220 DeoR-like helix-turn-helix domain CDO28_RS26765 PF01791 DeoC/LacD family aldolase CDO28_RS26770 PF00171 Aldehyde dehydrogenase family CDO28_RS26790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDO28_RS26790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS26795 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDO28_RS26800 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26805 PF00005 ABC transporter CDO28_RS26810 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS26815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS26820 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26825 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26830 PF01547 Bacterial extracellular solute-binding protein CDO28_RS26835 PF00005 ABC transporter CDO28_RS26835 PF17912 MalK OB fold domain CDO28_RS26850 PF07171 MlrC C-terminus CDO28_RS26850 PF07364 Metallopeptidase family M81 CDO28_RS26860 PF01042 Endoribonuclease L-PSP CDO28_RS26865 PF01380 SIS domain CDO28_RS26865 PF01418 Helix-turn-helix domain, rpiR family CDO28_RS26875 PF00728 Glycosyl hydrolase family 20, catalytic domain CDO28_RS26875 PF02838 Glycosyl hydrolase family 20, domain 2 CDO28_RS26890 PF17392 Urocanase C-terminal domain CDO28_RS26890 PF17391 Urocanase N-terminal domain CDO28_RS26890 PF01175 Urocanase Rossmann-like domain CDO28_RS26900 PF00221 Aromatic amino acid lyase CDO28_RS26905 PF01979 Amidohydrolase family CDO28_RS26910 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CDO28_RS26915 PF07690 Major Facilitator Superfamily CDO28_RS26920 PF01022 Bacterial regulatory protein, arsR family CDO28_RS26925 PF00625 Guanylate kinase CDO28_RS26930 PF07969 Amidohydrolase family CDO28_RS26935 PF06299 Protein of unknown function (DUF1045) CDO28_RS26945 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26950 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS26955 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS26955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS26960 PF00005 ABC transporter CDO28_RS26970 PF01266 FAD dependent oxidoreductase CDO28_RS26975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS26975 PF03466 LysR substrate binding domain CDO28_RS26980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS26980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS26980 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS26985 PF02515 CoA-transferase family III CDO28_RS26990 PF00183 Hsp90 protein CDO28_RS26995 PF00871 Acetokinase family CDO28_RS27000 PF00171 Aldehyde dehydrogenase family CDO28_RS27005 PF00202 Aminotransferase class-III CDO28_RS27015 PF01757 Acyltransferase family CDO28_RS27020 PF00535 Glycosyl transferase family 2 CDO28_RS27030 PF00005 ABC transporter CDO28_RS27030 PF00664 ABC transporter transmembrane region CDO28_RS27035 PF01116 Fructose-bisphosphate aldolase class-II CDO28_RS27040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS27045 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27050 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS27050 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27055 PF00005 ABC transporter CDO28_RS27055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS27060 PF00072 Response regulator receiver domain CDO28_RS27060 PF02954 Bacterial regulatory protein, Fis family CDO28_RS27060 PF00158 Sigma-54 interaction domain CDO28_RS27065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS27065 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS27065 PF02743 Cache domain CDO28_RS27070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO28_RS27095 PF00005 ABC transporter CDO28_RS27100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS27110 PF07689 KaiB domain CDO28_RS27110 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS27110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS27115 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS27115 PF00072 Response regulator receiver domain CDO28_RS27120 PF08019 Phosphoethanolamine transferase EptA/EptB CDO28_RS27120 PF00884 Sulfatase CDO28_RS27135 PF00149 Calcineurin-like phosphoesterase CDO28_RS27140 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS27145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS27170 PF13439 Glycosyltransferase Family 4 CDO28_RS27170 PF00534 Glycosyl transferases group 1 CDO28_RS27175 PF08241 Methyltransferase domain CDO28_RS27180 PF00535 Glycosyl transferase family 2 CDO28_RS27180 PF00534 Glycosyl transferases group 1 CDO28_RS27190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS27190 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS27195 PF00005 ABC transporter CDO28_RS27195 PF00664 ABC transporter transmembrane region CDO28_RS27200 PF12802 MarR family CDO28_RS27205 PF13439 Glycosyltransferase Family 4 CDO28_RS27205 PF00534 Glycosyl transferases group 1 CDO28_RS27235 PF00483 Nucleotidyl transferase CDO28_RS27240 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDO28_RS27245 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS27250 PF04321 RmlD substrate binding domain CDO28_RS27265 PF05532 CsbD-like CDO28_RS27290 PF01594 AI-2E family transporter CDO28_RS27300 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS27300 PF01799 [2Fe-2S] binding domain CDO28_RS27305 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS27305 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS27310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS27310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS27320 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS27325 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS27330 PF00005 ABC transporter CDO28_RS27335 PF13407 Periplasmic binding protein domain CDO28_RS27340 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS27355 PF04962 KduI/IolB family CDO28_RS27360 PF07729 FCD domain CDO28_RS27360 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS27365 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS27375 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS27380 PF02614 Glucuronate isomerase CDO28_RS27385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS27385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS27390 PF03631 Virulence factor BrkB CDO28_RS27420 PF04239 Protein of unknown function (DUF421) CDO28_RS27430 PF03631 Virulence factor BrkB CDO28_RS27435 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS27460 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO28_RS27460 PF00034 Cytochrome c CDO28_RS27460 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CDO28_RS27470 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS27480 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS27485 PF08013 Tagatose 6 phosphate kinase CDO28_RS27490 PF00294 pfkB family carbohydrate kinase CDO28_RS27495 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS27500 PF00005 ABC transporter CDO28_RS27505 PF13407 Periplasmic binding protein domain CDO28_RS27520 PF00775 Dioxygenase CDO28_RS27520 PF04444 Catechol dioxygenase N terminus CDO28_RS27540 PF00106 short chain dehydrogenase CDO28_RS27545 PF12833 Helix-turn-helix domain CDO28_RS27545 PF06719 AraC-type transcriptional regulator N-terminus CDO28_RS27550 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS27550 PF00155 Aminotransferase class I and II CDO28_RS27555 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDO28_RS27560 PF00005 ABC transporter CDO28_RS27565 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27580 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS27580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS27580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS27585 PF03601 Conserved hypothetical protein 698 CDO28_RS27590 PF01515 Phosphate acetyl/butaryl transferase CDO28_RS27595 PF08220 DeoR-like helix-turn-helix domain CDO28_RS27595 PF00455 DeoR C terminal sensor domain CDO28_RS27600 PF01266 FAD dependent oxidoreductase CDO28_RS27600 PF08669 Glycine cleavage T-protein C-terminal barrel domain CDO28_RS27600 PF01571 Aminomethyltransferase folate-binding domain CDO28_RS27600 PF16350 FAD dependent oxidoreductase central domain CDO28_RS27605 PF03466 LysR substrate binding domain CDO28_RS27605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS27610 PF02690 Na+/Pi-cotransporter CDO28_RS27615 PF00266 Aminotransferase class-V CDO28_RS27620 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CDO28_RS27625 PF00171 Aldehyde dehydrogenase family CDO28_RS27640 PF00005 ABC transporter CDO28_RS27645 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27660 PF00072 Response regulator receiver domain CDO28_RS27660 PF04397 LytTr DNA-binding domain CDO28_RS27665 PF07694 5TMR of 5TMR-LYT CDO28_RS27665 PF06580 Histidine kinase CDO28_RS27680 PF00581 Rhodanese-like domain CDO28_RS27710 PF00999 Sodium/hydrogen exchanger family CDO28_RS27710 PF02254 TrkA-N domain CDO28_RS27715 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS27715 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS27720 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS27720 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS27725 PF01799 [2Fe-2S] binding domain CDO28_RS27725 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS27730 PF02311 AraC-like ligand binding domain CDO28_RS27730 PF12833 Helix-turn-helix domain CDO28_RS27735 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS27735 PF00672 HAMP domain CDO28_RS27735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS27740 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS27740 PF00072 Response regulator receiver domain CDO28_RS27765 PF00118 TCP-1/cpn60 chaperonin family CDO28_RS27770 PF00166 Chaperonin 10 Kd subunit CDO28_RS27775 PF06233 Usg-like family CDO28_RS27785 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO28_RS27805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS27805 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS27835 PF00403 Heavy-metal-associated domain CDO28_RS27840 PF00376 MerR family regulatory protein CDO28_RS27840 PF09278 MerR, DNA binding CDO28_RS27845 PF09335 SNARE associated Golgi protein CDO28_RS27850 PF13439 Glycosyltransferase Family 4 CDO28_RS27850 PF00534 Glycosyl transferases group 1 CDO28_RS27875 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDO28_RS27875 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDO28_RS27880 PF13407 Periplasmic binding protein domain CDO28_RS27885 PF00005 ABC transporter CDO28_RS27890 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS27895 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS27900 PF07729 FCD domain CDO28_RS27900 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS27905 PF00005 ABC transporter CDO28_RS27905 PF17912 MalK OB fold domain CDO28_RS27910 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27915 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27920 PF13416 Bacterial extracellular solute-binding protein CDO28_RS27930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS27930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS27935 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS27945 PF00144 Beta-lactamase CDO28_RS27955 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27960 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS27965 PF13416 Bacterial extracellular solute-binding protein CDO28_RS27970 PF00005 ABC transporter CDO28_RS27970 PF17912 MalK OB fold domain CDO28_RS27975 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CDO28_RS27985 PF02163 Peptidase family M50 CDO28_RS27985 PF17820 PDZ domain CDO28_RS28000 PF17820 PDZ domain CDO28_RS28000 PF01471 Putative peptidoglycan binding domain CDO28_RS28000 PF03572 Peptidase family S41 CDO28_RS28005 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS28010 PF00005 ABC transporter CDO28_RS28020 PF00722 Glycosyl hydrolases family 16 CDO28_RS28020 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CDO28_RS28025 PF08447 PAS fold CDO28_RS28025 PF13426 PAS domain CDO28_RS28025 PF07536 HWE histidine kinase CDO28_RS28030 PF00072 Response regulator receiver domain CDO28_RS28050 PF00005 ABC transporter CDO28_RS28050 PF06472 ABC transporter transmembrane region 2 CDO28_RS28055 PF04055 Radical SAM superfamily CDO28_RS28060 PF01242 6-pyruvoyl tetrahydropterin synthase CDO28_RS28065 PF06508 Queuosine biosynthesis protein QueC CDO28_RS28070 PF00005 ABC transporter CDO28_RS28070 PF00664 ABC transporter transmembrane region CDO28_RS28075 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS28080 PF01757 Acyltransferase family CDO28_RS28090 PF02563 Polysaccharide biosynthesis/export protein CDO28_RS28095 PF02397 Bacterial sugar transferase CDO28_RS28100 PF11089 Exopolysaccharide production repressor CDO28_RS28105 PF00535 Glycosyl transferase family 2 CDO28_RS28110 PF04230 Polysaccharide pyruvyl transferase CDO28_RS28115 PF00535 Glycosyl transferase family 2 CDO28_RS28120 PF01943 Polysaccharide biosynthesis protein CDO28_RS28130 PF00565 Staphylococcal nuclease homologue CDO28_RS28145 PF01757 Acyltransferase family CDO28_RS28150 PF00722 Glycosyl hydrolases family 16 CDO28_RS28160 PF00535 Glycosyl transferase family 2 CDO28_RS28165 PF00535 Glycosyl transferase family 2 CDO28_RS28170 PF00535 Glycosyl transferase family 2 CDO28_RS28175 PF00483 Nucleotidyl transferase CDO28_RS28180 PF02706 Chain length determinant protein CDO28_RS28180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS28180 PF13807 G-rich domain on putative tyrosine kinase CDO28_RS28190 PF08543 Phosphomethylpyrimidine kinase CDO28_RS28195 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDO28_RS28195 PF00578 AhpC/TSA family CDO28_RS28205 PF08533 Beta-galactosidase C-terminal domain CDO28_RS28205 PF08532 Beta-galactosidase trimerisation domain CDO28_RS28205 PF02449 Beta-galactosidase CDO28_RS28210 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS28220 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS28225 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS28230 PF01547 Bacterial extracellular solute-binding protein CDO28_RS28235 PF00005 ABC transporter CDO28_RS28235 PF17912 MalK OB fold domain CDO28_RS28240 PF00202 Aminotransferase class-III CDO28_RS28245 PF00106 short chain dehydrogenase CDO28_RS28250 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS28255 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS28260 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS28270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS28280 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS28280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS28295 PF04324 BFD-like [2Fe-2S] binding domain CDO28_RS28295 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDO28_RS28295 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDO28_RS28295 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS28295 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDO28_RS28305 PF04324 BFD-like [2Fe-2S] binding domain CDO28_RS28305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDO28_RS28305 PF01568 Molydopterin dinucleotide binding domain CDO28_RS28305 PF00384 Molybdopterin oxidoreductase CDO28_RS28310 PF10414 Sirohaem synthase dimerisation region CDO28_RS28310 PF14824 Sirohaem biosynthesis protein central CDO28_RS28310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDO28_RS28325 PF16200 C-terminal region of band_7 CDO28_RS28325 PF01145 SPFH domain / Band 7 family CDO28_RS28350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS28350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS28350 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS28355 PF02082 Transcriptional regulator CDO28_RS28360 PF01926 50S ribosome-binding GTPase CDO28_RS28360 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDO28_RS28380 PF05992 SbmA/BacA-like family CDO28_RS28385 PF06779 Uncharacterised MFS-type transporter YbfB CDO28_RS28395 PF01609 Transposase DDE domain CDO28_RS28395 PF13808 DDE_Tnp_1-associated CDO28_RS28400 PF00557 Metallopeptidase family M24 CDO28_RS28435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS28435 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS28445 PF01799 [2Fe-2S] binding domain CDO28_RS28445 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS28455 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS28455 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS28470 PF03466 LysR substrate binding domain CDO28_RS28470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS28480 PF01979 Amidohydrolase family CDO28_RS28485 PF01070 FMN-dependent dehydrogenase CDO28_RS28490 PF04198 Putative sugar-binding domain CDO28_RS28495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS28495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS28500 PF00107 Zinc-binding dehydrogenase CDO28_RS28500 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS28505 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS28510 PF00005 ABC transporter CDO28_RS28515 PF13407 Periplasmic binding protein domain CDO28_RS28520 PF06560 Glucose-6-phosphate isomerase (GPI) CDO28_RS28525 PF01070 FMN-dependent dehydrogenase CDO28_RS28530 PF12833 Helix-turn-helix domain CDO28_RS28530 PF12852 Cupin CDO28_RS28540 PF00561 alpha/beta hydrolase fold CDO28_RS28545 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS28570 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDO28_RS28570 PF00753 Metallo-beta-lactamase superfamily CDO28_RS28580 PF08447 PAS fold CDO28_RS28580 PF13426 PAS domain CDO28_RS28580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS28580 PF13493 Domain of unknown function (DUF4118) CDO28_RS28580 PF00989 PAS fold CDO28_RS28580 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS28585 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS28585 PF00072 Response regulator receiver domain CDO28_RS28590 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS28590 PF00072 Response regulator receiver domain CDO28_RS28595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS28595 PF03466 LysR substrate binding domain CDO28_RS28605 PF00576 HIUase/Transthyretin family CDO28_RS28615 PF04115 Ureidoglycolate lyase CDO28_RS28620 PF09349 OHCU decarboxylase CDO28_RS28620 PF01014 Uricase CDO28_RS28635 PF01266 FAD dependent oxidoreductase CDO28_RS28640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDO28_RS28640 PF01266 FAD dependent oxidoreductase CDO28_RS28650 PF00270 DEAD/DEAH box helicase CDO28_RS28650 PF00271 Helicase conserved C-terminal domain CDO28_RS28680 PF14403 Circularly permuted ATP-grasp type 2 CDO28_RS28690 PF08379 Bacterial transglutaminase-like N-terminal region CDO28_RS28690 PF01841 Transglutaminase-like superfamily CDO28_RS28700 PF00920 Dehydratase family CDO28_RS28705 PF00171 Aldehyde dehydrogenase family CDO28_RS28715 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS28720 PF00005 ABC transporter CDO28_RS28725 PF13407 Periplasmic binding protein domain CDO28_RS28730 PF03466 LysR substrate binding domain CDO28_RS28730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS28750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS28750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS28755 PF00563 EAL domain CDO28_RS28755 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS28755 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS28755 PF13188 PAS domain CDO28_RS28765 PF13407 Periplasmic binding protein domain CDO28_RS28770 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS28775 PF00005 ABC transporter CDO28_RS28790 PF01548 Transposase CDO28_RS28790 PF02371 Transposase IS116/IS110/IS902 family CDO28_RS28795 PF01548 Transposase CDO28_RS28795 PF02371 Transposase IS116/IS110/IS902 family CDO28_RS28855 PF00872 Transposase, Mutator family CDO28_RS28870 PF00857 Isochorismatase family CDO28_RS28875 PF02735 Ku70/Ku80 beta-barrel domain CDO28_RS28880 PF02735 Ku70/Ku80 beta-barrel domain CDO28_RS28895 PF08241 Methyltransferase domain CDO28_RS28905 PF04343 Protein of unknown function, DUF488 CDO28_RS28910 PF13202 EF hand CDO28_RS28910 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDO28_RS28920 PF08031 Berberine and berberine like CDO28_RS28920 PF01565 FAD binding domain CDO28_RS28925 PF00483 Nucleotidyl transferase CDO28_RS28930 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS28935 PF08421 Putative zinc binding domain CDO28_RS28935 PF08484 C-methyltransferase C-terminal domain CDO28_RS28960 PF00005 ABC transporter CDO28_RS28965 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS28970 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CDO28_RS28970 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CDO28_RS28985 PF14602 Hexapeptide repeat of succinyl-transferase CDO28_RS28985 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS28985 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CDO28_RS28990 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDO28_RS28995 PF00005 ABC transporter CDO28_RS29000 PF01032 FecCD transport family CDO28_RS29010 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS29020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS29020 PF03466 LysR substrate binding domain CDO28_RS29025 PF01546 Peptidase family M20/M25/M40 CDO28_RS29025 PF07687 Peptidase dimerisation domain CDO28_RS29030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS29035 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS29040 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS29060 PF00571 CBS domain CDO28_RS29090 PF00128 Alpha amylase, catalytic domain CDO28_RS29090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO28_RS29095 PF11941 Domain of unknown function (DUF3459) CDO28_RS29095 PF00128 Alpha amylase, catalytic domain CDO28_RS29095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CDO28_RS29100 PF03167 Uracil DNA glycosylase superfamily CDO28_RS29150 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS29155 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS29160 PF00005 ABC transporter CDO28_RS29160 PF08402 TOBE domain CDO28_RS29165 PF01547 Bacterial extracellular solute-binding protein CDO28_RS29170 PF01467 Cytidylyltransferase-like CDO28_RS29170 PF00294 pfkB family carbohydrate kinase CDO28_RS29175 PF11975 Family 4 glycosyl hydrolase C-terminal domain CDO28_RS29175 PF02056 Family 4 glycosyl hydrolase CDO28_RS29180 PF07702 UTRA domain CDO28_RS29180 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS29185 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS29185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS29190 PF00005 ABC transporter CDO28_RS29190 PF00664 ABC transporter transmembrane region CDO28_RS29230 PF00106 short chain dehydrogenase CDO28_RS29250 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CDO28_RS29270 PF00571 CBS domain CDO28_RS29295 PF04542 Sigma-70 region 2 CDO28_RS29295 PF08281 Sigma-70, region 4 CDO28_RS29310 PF00083 Sugar (and other) transporter CDO28_RS29310 PF07690 Major Facilitator Superfamily CDO28_RS29315 PF06481 COX Aromatic Rich Motif CDO28_RS29315 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDO28_RS29320 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDO28_RS29325 PF00510 Cytochrome c oxidase subunit III CDO28_RS29330 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CDO28_RS29335 PF02104 SURF1 family CDO28_RS29355 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDO28_RS29370 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CDO28_RS29370 PF08548 Peptidase M10 serralysin C terminal CDO28_RS29370 PF00413 Matrixin CDO28_RS29375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS29380 PF00873 AcrB/AcrD/AcrF family CDO28_RS29400 PF13439 Glycosyltransferase Family 4 CDO28_RS29405 PF13439 Glycosyltransferase Family 4 CDO28_RS29405 PF00534 Glycosyl transferases group 1 CDO28_RS29425 PF01810 LysE type translocator CDO28_RS29430 PF00701 Dihydrodipicolinate synthetase family CDO28_RS29465 PF05175 Methyltransferase small domain CDO28_RS29475 PF17969 L,D-transpeptidase C-terminal domain CDO28_RS29475 PF01476 LysM domain CDO28_RS29475 PF03734 L,D-transpeptidase catalytic domain CDO28_RS29480 PF00563 EAL domain CDO28_RS29490 PF00672 HAMP domain CDO28_RS29490 PF07730 Histidine kinase CDO28_RS29490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS29495 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS29495 PF00072 Response regulator receiver domain CDO28_RS29505 PF03776 Septum formation topological specificity factor MinE CDO28_RS29510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDO28_RS29515 PF03775 Septum formation inhibitor MinC, C-terminal domain CDO28_RS29525 PF00248 Aldo/keto reductase family CDO28_RS29535 PF02540 NAD synthase CDO28_RS29540 PF00501 AMP-binding enzyme CDO28_RS29540 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS29550 PF13537 Glutamine amidotransferase domain CDO28_RS29550 PF00733 Asparagine synthase CDO28_RS29575 PF00248 Aldo/keto reductase family CDO28_RS29585 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS29590 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS29600 PF03459 TOBE domain CDO28_RS29600 PF17912 MalK OB fold domain CDO28_RS29600 PF00005 ABC transporter CDO28_RS29610 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS29620 PF00872 Transposase, Mutator family CDO28_RS29625 PF00596 Class II Aldolase and Adducin N-terminal domain CDO28_RS29630 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CDO28_RS29630 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS29635 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS29635 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS29640 PF01261 Xylose isomerase-like TIM barrel CDO28_RS29645 PF17042 Nucleotide-binding C-terminal domain CDO28_RS29645 PF07005 Sugar-binding N-terminal domain CDO28_RS29650 PF13407 Periplasmic binding protein domain CDO28_RS29655 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS29660 PF00005 ABC transporter CDO28_RS29665 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS29680 PF04115 Ureidoglycolate lyase CDO28_RS29685 PF13660 Domain of unknown function (DUF4147) CDO28_RS29685 PF05161 MOFRL family CDO28_RS29690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS29690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS29695 PF01261 Xylose isomerase-like TIM barrel CDO28_RS29700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS29700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS29700 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS29705 PF09339 IclR helix-turn-helix domain CDO28_RS29705 PF01614 Bacterial transcriptional regulator CDO28_RS29710 PF03466 LysR substrate binding domain CDO28_RS29710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS29715 PF07883 Cupin domain CDO28_RS29715 PF05899 Protein of unknown function (DUF861) CDO28_RS29720 PF13298 DNA polymerase Ligase (LigD) CDO28_RS29720 PF01068 ATP dependent DNA ligase domain CDO28_RS29720 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS29725 PF02735 Ku70/Ku80 beta-barrel domain CDO28_RS29765 PF00732 GMC oxidoreductase CDO28_RS29765 PF05199 GMC oxidoreductase CDO28_RS29780 PF01546 Peptidase family M20/M25/M40 CDO28_RS29790 PF13533 Biotin-lipoyl like CDO28_RS29805 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS29810 PF01161 Phosphatidylethanolamine-binding protein CDO28_RS29815 PF08323 Starch synthase catalytic domain CDO28_RS29815 PF00534 Glycosyl transferases group 1 CDO28_RS29825 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDO28_RS29830 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS29835 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDO28_RS29835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDO28_RS29840 PF02245 Methylpurine-DNA glycosylase (MPG) CDO28_RS29845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS29845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS29855 PF13407 Periplasmic binding protein domain CDO28_RS29860 PF00005 ABC transporter CDO28_RS29865 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS29870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS29870 PF03466 LysR substrate binding domain CDO28_RS29880 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS29885 PF00005 ABC transporter CDO28_RS29890 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS29895 PF13407 Periplasmic binding protein domain CDO28_RS29900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS29900 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS29905 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS29905 PF00072 Response regulator receiver domain CDO28_RS29915 PF03401 Tripartite tricarboxylate transporter family receptor CDO28_RS29925 PF01970 Tripartite tricarboxylate transporter TctA family CDO28_RS29950 PF03951 Glutamine synthetase, beta-Grasp domain CDO28_RS29950 PF00120 Glutamine synthetase, catalytic domain CDO28_RS29955 PF10931 Protein of unknown function (DUF2735) CDO28_RS29960 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS29965 PF00535 Glycosyl transferase family 2 CDO28_RS29970 PF01232 Mannitol dehydrogenase Rossmann domain CDO28_RS29970 PF08125 Mannitol dehydrogenase C-terminal domain CDO28_RS29975 PF00106 short chain dehydrogenase CDO28_RS29980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDO28_RS29980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDO28_RS29985 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS29990 PF02770 Acyl-CoA dehydrogenase, middle domain CDO28_RS29990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDO28_RS29990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDO28_RS29995 PF06114 IrrE N-terminal-like domain CDO28_RS29995 PF09856 Predicted transcriptional regulator (DUF2083) CDO28_RS29995 PF01381 Helix-turn-helix CDO28_RS30000 PF01039 Carboxyl transferase domain CDO28_RS30005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDO28_RS30005 PF00289 Biotin carboxylase, N-terminal domain CDO28_RS30005 PF00364 Biotin-requiring enzyme CDO28_RS30005 PF18140 Propionyl-coenzyme A carboxylase BT domain CDO28_RS30005 PF02785 Biotin carboxylase C-terminal domain CDO28_RS30010 PF01642 Methylmalonyl-CoA mutase CDO28_RS30010 PF02310 B12 binding domain CDO28_RS30015 PF07702 UTRA domain CDO28_RS30015 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS30020 PF06754 Phosphonate metabolism protein PhnG CDO28_RS30025 PF05845 Bacterial phosphonate metabolism protein (PhnH) CDO28_RS30030 PF05861 Bacterial phosphonate metabolism protein (PhnI) CDO28_RS30035 PF06007 Phosphonate metabolism protein PhnJ CDO28_RS30040 PF00005 ABC transporter CDO28_RS30045 PF00005 ABC transporter CDO28_RS30055 PF02734 DAK2 domain CDO28_RS30055 PF02733 Dak1 domain CDO28_RS30065 PF01970 Tripartite tricarboxylate transporter TctA family CDO28_RS30080 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDO28_RS30085 PF07729 FCD domain CDO28_RS30085 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS30100 PF00072 Response regulator receiver domain CDO28_RS30100 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS30105 PF12857 TOBE-like domain CDO28_RS30105 PF00005 ABC transporter CDO28_RS30110 PF00005 ABC transporter CDO28_RS30110 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDO28_RS30115 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS30125 PF13458 Periplasmic binding protein CDO28_RS30130 PF00005 ABC transporter CDO28_RS30140 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30145 PF00296 Luciferase-like monooxygenase CDO28_RS30150 PF03358 NADPH-dependent FMN reductase CDO28_RS30155 PF00128 Alpha amylase, catalytic domain CDO28_RS30160 PF00206 Lyase CDO28_RS30160 PF10397 Adenylosuccinate lyase C-terminus CDO28_RS30165 PF00775 Dioxygenase CDO28_RS30170 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CDO28_RS30170 PF00775 Dioxygenase CDO28_RS30175 PF02627 Carboxymuconolactone decarboxylase family CDO28_RS30180 PF12697 Alpha/beta hydrolase family CDO28_RS30185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS30185 PF03466 LysR substrate binding domain CDO28_RS30190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO28_RS30190 PF01261 Xylose isomerase-like TIM barrel CDO28_RS30200 PF01494 FAD binding domain CDO28_RS30205 PF00174 Oxidoreductase molybdopterin binding domain CDO28_RS30215 PF01614 Bacterial transcriptional regulator CDO28_RS30215 PF09339 IclR helix-turn-helix domain CDO28_RS30220 PF01144 Coenzyme A transferase CDO28_RS30225 PF01144 Coenzyme A transferase CDO28_RS30230 PF02803 Thiolase, C-terminal domain CDO28_RS30230 PF00108 Thiolase, N-terminal domain CDO28_RS30235 PF00708 Acylphosphatase CDO28_RS30240 PF04542 Sigma-70 region 2 CDO28_RS30240 PF08281 Sigma-70, region 4 CDO28_RS30255 PF17854 FtsK alpha domain CDO28_RS30255 PF09397 Ftsk gamma domain CDO28_RS30255 PF01580 FtsK/SpoIIIE family CDO28_RS30255 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDO28_RS30270 PF13614 AAA domain CDO28_RS30275 PF07506 RepB plasmid partitioning protein CDO28_RS30275 PF02195 ParB-like nuclease domain CDO28_RS30285 PF00005 ABC transporter CDO28_RS30290 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDO28_RS30290 PF00005 ABC transporter CDO28_RS30300 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS30335 PF13191 AAA ATPase domain CDO28_RS30335 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS30340 PF00072 Response regulator receiver domain CDO28_RS30340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS30340 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS30340 PF18415 Histidine kinase receptor ArcB trans-membrane domain CDO28_RS30340 PF00989 PAS fold CDO28_RS30340 PF01627 Hpt domain CDO28_RS30345 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS30345 PF00072 Response regulator receiver domain CDO28_RS30350 PF00375 Sodium:dicarboxylate symporter family CDO28_RS30355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS30355 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS30360 PF00158 Sigma-54 interaction domain CDO28_RS30360 PF00072 Response regulator receiver domain CDO28_RS30360 PF02954 Bacterial regulatory protein, Fis family CDO28_RS30370 PF01964 Radical SAM ThiC family CDO28_RS30370 PF13667 ThiC-associated domain CDO28_RS30375 PF01266 FAD dependent oxidoreductase CDO28_RS30385 PF05690 Thiazole biosynthesis protein ThiG CDO28_RS30390 PF02581 Thiamine monophosphate synthase CDO28_RS30395 PF07690 Major Facilitator Superfamily CDO28_RS30400 PF12833 Helix-turn-helix domain CDO28_RS30410 PF01402 Ribbon-helix-helix protein, copG family CDO28_RS30420 PF00005 ABC transporter CDO28_RS30420 PF17912 MalK OB fold domain CDO28_RS30425 PF07944 Beta-L-arabinofuranosidase, GH127 CDO28_RS30430 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30435 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30440 PF01547 Bacterial extracellular solute-binding protein CDO28_RS30445 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS30450 PF03435 Saccharopine dehydrogenase NADP binding domain CDO28_RS30450 PF16653 Saccharopine dehydrogenase C-terminal domain CDO28_RS30455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO28_RS30460 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS30460 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDO28_RS30460 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDO28_RS30465 PF00378 Enoyl-CoA hydratase/isomerase CDO28_RS30470 PF03061 Thioesterase superfamily CDO28_RS30475 PF00171 Aldehyde dehydrogenase family CDO28_RS30475 PF01575 MaoC like domain CDO28_RS30480 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS30480 PF00970 Oxidoreductase FAD-binding domain CDO28_RS30480 PF00175 Oxidoreductase NAD-binding domain CDO28_RS30485 PF01883 Iron-sulfur cluster assembly protein CDO28_RS30490 PF05138 Phenylacetic acid catabolic protein CDO28_RS30495 PF06243 Phenylacetic acid degradation B CDO28_RS30500 PF05138 Phenylacetic acid catabolic protein CDO28_RS30515 PF11975 Family 4 glycosyl hydrolase C-terminal domain CDO28_RS30515 PF02056 Family 4 glycosyl hydrolase CDO28_RS30520 PF00005 ABC transporter CDO28_RS30520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS30525 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30525 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS30530 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS30540 PF11975 Family 4 glycosyl hydrolase C-terminal domain CDO28_RS30540 PF02056 Family 4 glycosyl hydrolase CDO28_RS30565 PF13416 Bacterial extracellular solute-binding protein CDO28_RS30570 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30575 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS30580 PF00703 Glycosyl hydrolases family 2 CDO28_RS30580 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 CDO28_RS30580 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CDO28_RS30590 PF03807 NADP oxidoreductase coenzyme F420-dependent CDO28_RS30590 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDO28_RS30595 PF03466 LysR substrate binding domain CDO28_RS30595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS30600 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS30610 PF18011 C-terminal domain found in long catalases CDO28_RS30610 PF06628 Catalase-related immune-responsive CDO28_RS30610 PF00199 Catalase CDO28_RS30615 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS30615 PF01068 ATP dependent DNA ligase domain CDO28_RS30620 PF03466 LysR substrate binding domain CDO28_RS30620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS30640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS30640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS30645 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS30650 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS30655 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS30660 PF00005 ABC transporter CDO28_RS30670 PF13407 Periplasmic binding protein domain CDO28_RS30675 PF00364 Biotin-requiring enzyme CDO28_RS30675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDO28_RS30675 PF02817 e3 binding domain CDO28_RS30680 PF02780 Transketolase, C-terminal domain CDO28_RS30680 PF02779 Transketolase, pyrimidine binding domain CDO28_RS30685 PF13404 AsnC-type helix-turn-helix domain CDO28_RS30685 PF01037 Lrp/AsnC ligand binding domain CDO28_RS30705 PF01968 Hydantoinase/oxoprolinase CDO28_RS30705 PF05378 Hydantoinase/oxoprolinase N-terminal region CDO28_RS30710 PF00849 RNA pseudouridylate synthase CDO28_RS30710 PF01479 S4 domain CDO28_RS30715 PF03401 Tripartite tricarboxylate transporter family receptor CDO28_RS30725 PF01970 Tripartite tricarboxylate transporter TctA family CDO28_RS30740 PF02627 Carboxymuconolactone decarboxylase family CDO28_RS30745 PF04542 Sigma-70 region 2 CDO28_RS30745 PF08281 Sigma-70, region 4 CDO28_RS30755 PF17938 Tetracyclin repressor-like, C-terminal domain CDO28_RS30755 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS30760 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS30765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS30770 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS30775 PF08501 Shikimate dehydrogenase substrate binding domain CDO28_RS30775 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDO28_RS30790 PF00155 Aminotransferase class I and II CDO28_RS30790 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS30795 PF00892 EamA-like transporter family CDO28_RS30805 PF11972 HTH DNA binding domain CDO28_RS30805 PF07756 Protein of unknown function (DUF1612) CDO28_RS30815 PF11800 Replication protein C C-terminal region CDO28_RS30815 PF03428 Replication protein C N-terminal domain CDO28_RS30820 PF07506 RepB plasmid partitioning protein CDO28_RS30820 PF02195 ParB-like nuclease domain CDO28_RS30825 PF13614 AAA domain CDO28_RS30835 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS30835 PF07702 UTRA domain CDO28_RS30840 PF14492 Elongation Factor G, domain II CDO28_RS30840 PF00679 Elongation factor G C-terminus CDO28_RS30840 PF03764 Elongation factor G, domain IV CDO28_RS30840 PF00009 Elongation factor Tu GTP binding domain CDO28_RS30850 PF00561 alpha/beta hydrolase fold CDO28_RS30870 PF01032 FecCD transport family CDO28_RS30875 PF00005 ABC transporter CDO28_RS30880 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS30900 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CDO28_RS30905 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CDO28_RS30930 PF07311 Dodecin CDO28_RS30935 PF01235 Sodium:alanine symporter family CDO28_RS30940 PF01740 STAS domain CDO28_RS30940 PF00916 Sulfate permease family CDO28_RS30945 PF07690 Major Facilitator Superfamily CDO28_RS30950 PF13407 Periplasmic binding protein domain CDO28_RS30970 PF00106 short chain dehydrogenase CDO28_RS30975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS30975 PF07730 Histidine kinase CDO28_RS30980 PF00072 Response regulator receiver domain CDO28_RS30980 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS30995 PF00107 Zinc-binding dehydrogenase CDO28_RS30995 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS30995 PF13823 Alcohol dehydrogenase GroES-associated CDO28_RS31040 PF05139 Erythromycin esterase CDO28_RS31040 PF00156 Phosphoribosyl transferase domain CDO28_RS31055 PF05974 Domain of unknown function (DUF892) CDO28_RS31065 PF03706 Lysylphosphatidylglycerol synthase TM region CDO28_RS31075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDO28_RS31075 PF00205 Thiamine pyrophosphate enzyme, central domain CDO28_RS31075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDO28_RS31095 PF00128 Alpha amylase, catalytic domain CDO28_RS31095 PF16657 Maltogenic Amylase, C-terminal domain CDO28_RS31100 PF00296 Luciferase-like monooxygenase CDO28_RS31105 PF01266 FAD dependent oxidoreductase CDO28_RS31110 PF01590 GAF domain CDO28_RS31110 PF02954 Bacterial regulatory protein, Fis family CDO28_RS31110 PF00158 Sigma-54 interaction domain CDO28_RS31125 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS31125 PF07729 FCD domain CDO28_RS31140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS31145 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31150 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS31150 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31155 PF00005 ABC transporter CDO28_RS31155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS31165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS31165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS31170 PF03737 Aldolase/RraA CDO28_RS31175 PF00920 Dehydratase family CDO28_RS31185 PF13439 Glycosyltransferase Family 4 CDO28_RS31200 PF02796 Helix-turn-helix domain of resolvase CDO28_RS31200 PF00239 Resolvase, N terminal domain CDO28_RS31220 PF03466 LysR substrate binding domain CDO28_RS31220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS31225 PF00005 ABC transporter CDO28_RS31230 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS31235 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS31255 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS31255 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS31260 PF01799 [2Fe-2S] binding domain CDO28_RS31260 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS31265 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS31265 PF01799 [2Fe-2S] binding domain CDO28_RS31265 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS31270 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDO28_RS31270 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDO28_RS31275 PF00860 Permease family CDO28_RS31280 PF02441 Flavoprotein CDO28_RS31285 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDO28_RS31305 PF00701 Dihydrodipicolinate synthetase family CDO28_RS31310 PF00005 ABC transporter CDO28_RS31310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS31315 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31315 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS31320 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS31335 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDO28_RS31340 PF00465 Iron-containing alcohol dehydrogenase CDO28_RS31345 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS31345 PF07729 FCD domain CDO28_RS31350 PF07005 Sugar-binding N-terminal domain CDO28_RS31350 PF17042 Nucleotide-binding C-terminal domain CDO28_RS31355 PF00459 Inositol monophosphatase family CDO28_RS31370 PF02690 Na+/Pi-cotransporter CDO28_RS31375 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS31380 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31385 PF00005 ABC transporter CDO28_RS31385 PF08402 TOBE domain CDO28_RS31400 PF00459 Inositol monophosphatase family CDO28_RS31420 PF00072 Response regulator receiver domain CDO28_RS31420 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS31430 PF00672 HAMP domain CDO28_RS31430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS31430 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS31430 PF01627 Hpt domain CDO28_RS31430 PF00072 Response regulator receiver domain CDO28_RS31430 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDO28_RS31460 PF00107 Zinc-binding dehydrogenase CDO28_RS31460 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS31465 PF00756 Putative esterase CDO28_RS31470 PF00034 Cytochrome c CDO28_RS31475 PF13360 PQQ-like domain CDO28_RS31525 PF00005 ABC transporter CDO28_RS31530 PF00005 ABC transporter CDO28_RS31540 PF04828 Glutathione-dependent formaldehyde-activating enzyme CDO28_RS31550 PF00834 Ribulose-phosphate 3 epimerase family CDO28_RS31555 PF17866 AAA lid domain CDO28_RS31555 PF00004 ATPase family associated with various cellular activities (AAA) CDO28_RS31560 PF00101 Ribulose bisphosphate carboxylase, small chain CDO28_RS31565 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CDO28_RS31565 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CDO28_RS31570 PF01116 Fructose-bisphosphate aldolase class-II CDO28_RS31575 PF02779 Transketolase, pyrimidine binding domain CDO28_RS31575 PF00456 Transketolase, thiamine diphosphate binding domain CDO28_RS31575 PF02780 Transketolase, C-terminal domain CDO28_RS31580 PF00485 Phosphoribulokinase / Uridine kinase family CDO28_RS31585 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDO28_RS31590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS31590 PF03466 LysR substrate binding domain CDO28_RS31595 PF08042 PqqA family CDO28_RS31600 PF12706 Beta-lactamase superfamily domain CDO28_RS31605 PF03070 TENA/THI-4/PQQC family CDO28_RS31610 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CDO28_RS31615 PF04055 Radical SAM superfamily CDO28_RS31615 PF13186 Iron-sulfur cluster-binding domain CDO28_RS31630 PF03466 LysR substrate binding domain CDO28_RS31630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS31640 PF02683 Cytochrome C biogenesis protein transmembrane region CDO28_RS31640 PF00578 AhpC/TSA family CDO28_RS31640 PF17991 Thioredoxin like C-terminal domain CDO28_RS31645 PF00106 short chain dehydrogenase CDO28_RS31650 PF12833 Helix-turn-helix domain CDO28_RS31650 PF01965 DJ-1/PfpI family CDO28_RS31655 PF00561 alpha/beta hydrolase fold CDO28_RS31665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS31665 PF00672 HAMP domain CDO28_RS31665 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS31670 PF00072 Response regulator receiver domain CDO28_RS31670 PF00486 Transcriptional regulatory protein, C terminal CDO28_RS31675 PF06441 Epoxide hydrolase N terminus CDO28_RS31680 PF06441 Epoxide hydrolase N terminus CDO28_RS31725 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS31730 PF13416 Bacterial extracellular solute-binding protein CDO28_RS31735 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31740 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31750 PF03459 TOBE domain CDO28_RS31750 PF17912 MalK OB fold domain CDO28_RS31750 PF00005 ABC transporter CDO28_RS31770 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS31790 PF13439 Glycosyltransferase Family 4 CDO28_RS31790 PF00534 Glycosyl transferases group 1 CDO28_RS31795 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS31800 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS31805 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS31805 PF00107 Zinc-binding dehydrogenase CDO28_RS31810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS31810 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS31820 PF01658 Myo-inositol-1-phosphate synthase CDO28_RS31860 PF00672 HAMP domain CDO28_RS31860 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS31860 PF02743 Cache domain CDO28_RS31870 PF00701 Dihydrodipicolinate synthetase family CDO28_RS31880 PF02615 Malate/L-lactate dehydrogenase CDO28_RS31885 PF00171 Aldehyde dehydrogenase family CDO28_RS31895 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31900 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31905 PF00005 ABC transporter CDO28_RS31910 PF01266 FAD dependent oxidoreductase CDO28_RS31915 PF05544 Proline racemase CDO28_RS31925 PF05544 Proline racemase CDO28_RS31930 PF02566 OsmC-like protein CDO28_RS31935 PF07690 Major Facilitator Superfamily CDO28_RS31955 PF05853 beta-keto acid cleavage enzyme CDO28_RS31965 PF00202 Aminotransferase class-III CDO28_RS31980 PF13454 FAD-NAD(P)-binding CDO28_RS31985 PF08402 TOBE domain CDO28_RS31985 PF00005 ABC transporter CDO28_RS31990 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS31995 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32005 PF03466 LysR substrate binding domain CDO28_RS32005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS32020 PF01979 Amidohydrolase family CDO28_RS32025 PF00860 Permease family CDO28_RS32030 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS32040 PF16868 NMT1-like family CDO28_RS32050 PF07729 FCD domain CDO28_RS32050 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS32055 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS32060 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS32060 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CDO28_RS32065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS32070 PF00701 Dihydrodipicolinate synthetase family CDO28_RS32075 PF00701 Dihydrodipicolinate synthetase family CDO28_RS32080 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS32085 PF07995 Glucose / Sorbosone dehydrogenase CDO28_RS32100 PF02734 DAK2 domain CDO28_RS32105 PF02733 Dak1 domain CDO28_RS32110 PF02734 DAK2 domain CDO28_RS32115 PF02733 Dak1 domain CDO28_RS32120 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS32125 PF13407 Periplasmic binding protein domain CDO28_RS32130 PF00005 ABC transporter CDO28_RS32135 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS32140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDO28_RS32140 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS32150 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS32155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS32170 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS32175 PF01547 Bacterial extracellular solute-binding protein CDO28_RS32180 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32185 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32190 PF00005 ABC transporter CDO28_RS32190 PF17912 MalK OB fold domain CDO28_RS32190 PF03459 TOBE domain CDO28_RS32200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS32200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS32245 PF03781 Sulfatase-modifying factor enzyme 1 CDO28_RS32260 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS32290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS32290 PF00034 Cytochrome c CDO28_RS32290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO28_RS32295 PF01799 [2Fe-2S] binding domain CDO28_RS32295 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS32300 PF12833 Helix-turn-helix domain CDO28_RS32300 PF06719 AraC-type transcriptional regulator N-terminus CDO28_RS32305 PF00873 AcrB/AcrD/AcrF family CDO28_RS32320 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term CDO28_RS32320 PF10727 Rossmann-like domain CDO28_RS32325 PF13407 Periplasmic binding protein domain CDO28_RS32340 PF00005 ABC transporter CDO28_RS32345 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS32350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS32350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS32365 PF00512 His Kinase A (phospho-acceptor) domain CDO28_RS32365 PF09308 LuxQ, periplasmic CDO28_RS32365 PF00072 Response regulator receiver domain CDO28_RS32365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDO28_RS32370 PF00072 Response regulator receiver domain CDO28_RS32375 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS32395 PF00459 Inositol monophosphatase family CDO28_RS32400 PF00005 ABC transporter CDO28_RS32400 PF08402 TOBE domain CDO28_RS32405 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32415 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS32420 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS32430 PF02687 FtsX-like permease family CDO28_RS32430 PF12704 MacB-like periplasmic core domain CDO28_RS32435 PF00005 ABC transporter CDO28_RS32440 PF02502 Ribose/Galactose Isomerase CDO28_RS32445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS32455 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS32460 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS32460 PF07729 FCD domain CDO28_RS32470 PF01042 Endoribonuclease L-PSP CDO28_RS32475 PF00171 Aldehyde dehydrogenase family CDO28_RS32480 PF00202 Aminotransferase class-III CDO28_RS32485 PF00005 ABC transporter CDO28_RS32485 PF08402 TOBE domain CDO28_RS32490 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32495 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32525 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS32525 PF00107 Zinc-binding dehydrogenase CDO28_RS32530 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS32530 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS32530 PF00563 EAL domain CDO28_RS32545 PF07238 PilZ domain CDO28_RS32545 PF03552 Cellulose synthase CDO28_RS32545 PF00535 Glycosyl transferase family 2 CDO28_RS32550 PF07729 FCD domain CDO28_RS32550 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS32555 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CDO28_RS32555 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CDO28_RS32560 PF17042 Nucleotide-binding C-terminal domain CDO28_RS32560 PF07005 Sugar-binding N-terminal domain CDO28_RS32565 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS32565 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO28_RS32570 PF03450 CO dehydrogenase flavoprotein C-terminal domain CDO28_RS32570 PF00941 FAD binding domain in molybdopterin dehydrogenase CDO28_RS32575 PF01799 [2Fe-2S] binding domain CDO28_RS32575 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS32600 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO28_RS32600 PF00034 Cytochrome c CDO28_RS32600 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS32605 PF01799 [2Fe-2S] binding domain CDO28_RS32605 PF00111 2Fe-2S iron-sulfur cluster binding domain CDO28_RS32610 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CDO28_RS32610 PF00034 Cytochrome c CDO28_RS32610 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CDO28_RS32635 PF13416 Bacterial extracellular solute-binding protein CDO28_RS32640 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32645 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32650 PF08402 TOBE domain CDO28_RS32650 PF00005 ABC transporter CDO28_RS32655 PF02798 Glutathione S-transferase, N-terminal domain CDO28_RS32655 PF00043 Glutathione S-transferase, C-terminal domain CDO28_RS32660 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS32660 PF00107 Zinc-binding dehydrogenase CDO28_RS32665 PF00202 Aminotransferase class-III CDO28_RS32670 PF00171 Aldehyde dehydrogenase family CDO28_RS32675 PF01037 Lrp/AsnC ligand binding domain CDO28_RS32680 PF00155 Aminotransferase class I and II CDO28_RS32680 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS32685 PF00005 ABC transporter CDO28_RS32695 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32700 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32705 PF17645 Arylmalonate decarboxylase CDO28_RS32710 PF00291 Pyridoxal-phosphate dependent enzyme CDO28_RS32715 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDO28_RS32720 PF01321 Creatinase/Prolidase N-terminal domain CDO28_RS32720 PF00557 Metallopeptidase family M24 CDO28_RS32725 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CDO28_RS32730 PF07690 Major Facilitator Superfamily CDO28_RS32735 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS32735 PF07729 FCD domain CDO28_RS32740 PF03480 Bacterial extracellular solute-binding protein, family 7 CDO28_RS32750 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CDO28_RS32755 PF00107 Zinc-binding dehydrogenase CDO28_RS32755 PF08240 Alcohol dehydrogenase GroES-like domain CDO28_RS32760 PF03786 D-mannonate dehydratase (UxuA) CDO28_RS32765 PF00563 EAL domain CDO28_RS32765 PF03707 Bacterial signalling protein N terminal repeat CDO28_RS32765 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS32765 PF13188 PAS domain CDO28_RS32775 PF01209 ubiE/COQ5 methyltransferase family CDO28_RS32805 PF00440 Bacterial regulatory proteins, tetR family CDO28_RS32820 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS32825 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS32840 PF11606 Family 31 carbohydrate binding protein CDO28_RS32860 PF05343 M42 glutamyl aminopeptidase CDO28_RS32875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS32880 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS32885 PF00005 ABC transporter CDO28_RS32885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS32890 PF00005 ABC transporter CDO28_RS32890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS32895 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS32895 PF07702 UTRA domain CDO28_RS32900 PF13537 Glutamine amidotransferase domain CDO28_RS32900 PF00733 Asparagine synthase CDO28_RS32910 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS32920 PF00005 ABC transporter CDO28_RS32925 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS32930 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS32935 PF01261 Xylose isomerase-like TIM barrel CDO28_RS32945 PF00596 Class II Aldolase and Adducin N-terminal domain CDO28_RS32970 PF03466 LysR substrate binding domain CDO28_RS32970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDO28_RS32985 PF00732 GMC oxidoreductase CDO28_RS32985 PF05199 GMC oxidoreductase CDO28_RS32990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDO28_RS32990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDO28_RS32995 PF01791 DeoC/LacD family aldolase CDO28_RS33000 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDO28_RS33000 PF01266 FAD dependent oxidoreductase CDO28_RS33005 PF00248 Aldo/keto reductase family CDO28_RS33010 PF13936 Helix-turn-helix domain CDO28_RS33010 PF04198 Putative sugar-binding domain CDO28_RS33015 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS33020 PF00005 ABC transporter CDO28_RS33035 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS33040 PF00005 ABC transporter CDO28_RS33045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CDO28_RS33050 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS33050 PF07729 FCD domain CDO28_RS33055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDO28_RS33055 PF13378 Enolase C-terminal domain-like CDO28_RS33070 PF01339 CheB methylesterase CDO28_RS33070 PF00072 Response regulator receiver domain CDO28_RS33075 PF08448 PAS fold CDO28_RS33075 PF01739 CheR methyltransferase, SAM binding domain CDO28_RS33075 PF01339 CheB methylesterase CDO28_RS33075 PF03705 CheR methyltransferase, all-alpha domain CDO28_RS33120 PF05114 Protein of unknown function (DUF692) CDO28_RS33155 PF01842 ACT domain CDO28_RS33155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDO28_RS33155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDO28_RS33165 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS33170 PF13416 Bacterial extracellular solute-binding protein CDO28_RS33180 PF00211 Adenylate and Guanylate cyclase catalytic domain CDO28_RS33290 PF04304 Protein of unknown function (DUF454) CDO28_RS33350 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CDO28_RS33360 PF01380 SIS domain CDO28_RS33360 PF00571 CBS domain CDO28_RS33365 PF01757 Acyltransferase family CDO28_RS33380 PF00664 ABC transporter transmembrane region CDO28_RS33380 PF00005 ABC transporter CDO28_RS33395 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS33400 PF00664 ABC transporter transmembrane region CDO28_RS33400 PF00005 ABC transporter CDO28_RS33415 PF00535 Glycosyl transferase family 2 CDO28_RS33430 PF00668 Condensation domain CDO28_RS33430 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS33430 PF00501 AMP-binding enzyme CDO28_RS33430 PF00550 Phosphopantetheine attachment site CDO28_RS33435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDO28_RS33435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDO28_RS33440 PF00550 Phosphopantetheine attachment site CDO28_RS33475 PF00535 Glycosyl transferase family 2 CDO28_RS33480 PF03275 UDP-galactopyranose mutase CDO28_RS33490 PF01548 Transposase CDO28_RS33490 PF02371 Transposase IS116/IS110/IS902 family CDO28_RS33555 PF02397 Bacterial sugar transferase CDO28_RS33570 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS33575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDO28_RS33575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDO28_RS33580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO28_RS33590 PF01370 NAD dependent epimerase/dehydratase family CDO28_RS33595 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDO28_RS33605 PF04321 RmlD substrate binding domain CDO28_RS33610 PF16363 GDP-mannose 4,6 dehydratase CDO28_RS33615 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDO28_RS33620 PF00483 Nucleotidyl transferase CDO28_RS33625 PF02563 Polysaccharide biosynthesis/export protein CDO28_RS33630 PF00072 Response regulator receiver domain CDO28_RS33630 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS33635 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS33635 PF00072 Response regulator receiver domain CDO28_RS33640 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS33640 PF00072 Response regulator receiver domain CDO28_RS33665 PF00356 Bacterial regulatory proteins, lacI family CDO28_RS33675 PF00355 Rieske [2Fe-2S] domain CDO28_RS33680 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDO28_RS33680 PF14759 Reductase C-terminal CDO28_RS33685 PF02548 Ketopantoate hydroxymethyltransferase CDO28_RS33695 PF05159 Capsule polysaccharide biosynthesis protein CDO28_RS33705 PF00132 Bacterial transferase hexapeptide (six repeats) CDO28_RS33745 PF01380 SIS domain CDO28_RS33745 PF00571 CBS domain CDO28_RS33755 PF00005 ABC transporter CDO28_RS33760 PF01061 ABC-2 type transporter CDO28_RS33765 PF05159 Capsule polysaccharide biosynthesis protein CDO28_RS33810 PF03062 MBOAT, membrane-bound O-acyltransferase family CDO28_RS33825 PF00596 Class II Aldolase and Adducin N-terminal domain CDO28_RS33830 PF13407 Periplasmic binding protein domain CDO28_RS33835 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS33840 PF02653 Branched-chain amino acid transport system / permease component CDO28_RS33845 PF00005 ABC transporter CDO28_RS33850 PF04198 Putative sugar-binding domain CDO28_RS33860 PF03992 Antibiotic biosynthesis monooxygenase CDO28_RS33945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDO28_RS33950 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS33955 PF12911 N-terminal TM domain of oligopeptide transport permease C CDO28_RS33955 PF00528 Binding-protein-dependent transport system inner membrane component CDO28_RS33960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDO28_RS33960 PF00005 ABC transporter CDO28_RS33995 PF11800 Replication protein C C-terminal region CDO28_RS33995 PF03428 Replication protein C N-terminal domain CDO28_RS34000 PF02195 ParB-like nuclease domain CDO28_RS34000 PF07506 RepB plasmid partitioning protein CDO28_RS34005 PF13614 AAA domain CDO28_RS34005 PF00376 MerR family regulatory protein CDO28_RS34010 PF18818 Metallopeptidase superfamily domain CDO28_RS34010 PF08401 Domain of unknown function (DUF1738) CDO28_RS34015 PF02661 Fic/DOC family CDO28_RS34015 PF18543 Intracellular delivery domain CDO28_RS34045 PF01609 Transposase DDE domain CDO28_RS34045 PF13808 DDE_Tnp_1-associated CDO28_RS34060 PF13419 Haloacid dehalogenase-like hydrolase CDO28_RS34070 PF03796 DnaB-like helicase C terminal domain CDO28_RS34135 PF08448 PAS fold CDO28_RS34135 PF00990 Diguanylate cyclase, GGDEF domain CDO28_RS34175 PF00313 'Cold-shock' DNA-binding domain CDO28_RS34190 PF00155 Aminotransferase class I and II CDO28_RS34190 PF00392 Bacterial regulatory proteins, gntR family CDO28_RS34255 PF01464 Transglycosylase SLT domain CDO28_RS34260 PF04956 TrbC/VIRB2 family CDO28_RS34270 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CDO28_RS34275 PF01464 Transglycosylase SLT domain CDO28_RS34305 PF03743 Bacterial conjugation TrbI-like protein CDO28_RS34310 PF00437 Type II/IV secretion system protein CDO28_RS34315 PF02534 Type IV secretory system Conjugative DNA transfer CDO28_RS34325 PF00529 HlyD membrane-fusion protein of T1SS CDO28_RS34325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDO28_RS34335 PF01548 Transposase CDO28_RS34335 PF02371 Transposase IS116/IS110/IS902 family CDO28_RS34350 PF07478 D-ala D-ala ligase C-terminus CDO28_RS34350 PF01820 D-ala D-ala ligase N-terminus CDO28_RS34355 PF00248 Aldo/keto reductase family CDO28_RS34365 PF02153 Prephenate dehydrogenase CDO28_RS34370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDO28_RS34375 PF00425 chorismate binding enzyme CDO28_RS34375 PF00117 Glutamine amidotransferase class-I CDO28_RS34375 PF04715 Anthranilate synthase component I, N terminal region CDO28_RS34380 PF00501 AMP-binding enzyme CDO28_RS34380 PF00668 Condensation domain CDO28_RS34380 PF08241 Methyltransferase domain CDO28_RS34380 PF00391 PEP-utilising enzyme, mobile domain CDO28_RS34380 PF00550 Phosphopantetheine attachment site CDO28_RS34380 PF00975 Thioesterase domain CDO28_RS34380 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS34385 PF00501 AMP-binding enzyme CDO28_RS34385 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS34385 PF00668 Condensation domain CDO28_RS34385 PF00975 Thioesterase domain CDO28_RS34385 PF00550 Phosphopantetheine attachment site CDO28_RS34390 PF13193 AMP-binding enzyme C-terminal domain CDO28_RS34390 PF00501 AMP-binding enzyme CDO28_RS34390 PF00668 Condensation domain CDO28_RS34390 PF00550 Phosphopantetheine attachment site CDO28_RS34390 PF00975 Thioesterase domain CDO28_RS34395 PF07929 Plasmid pRiA4b ORF-3-like protein CDO28_RS34405 PF05717 IS66 Orf2 like protein CDO28_RS34410 PF02899 Phage integrase, N-terminal SAM-like domain CDO28_RS34410 PF00589 Phage integrase family CDO28_RS34415 PF00589 Phage integrase family CDO28_RS34425 PF05717 IS66 Orf2 like protein CDO28_RS34430 PF01527 Transposase CDO28_RS34440 PF01648 4'-phosphopantetheinyl transferase superfamily CDO28_RS34465 PF04991 LicD family CDO28_RS34470 PF01467 Cytidylyltransferase-like CDO28_RS34485 PF00005 ABC transporter CDO28_RS34495 PF00872 Transposase, Mutator family CDO28_RS34520 PF02374 Anion-transporting ATPase CDO28_RS34540 PF13298 DNA polymerase Ligase (LigD) CDO28_RS34540 PF01068 ATP dependent DNA ligase domain CDO28_RS34540 PF04679 ATP dependent DNA ligase C terminal region CDO28_RS34590 PF00196 Bacterial regulatory proteins, luxR family CDO28_RS34590 PF00072 Response regulator receiver domain CDO28_RS34625 PF01939 Endonuclease NucS CDO28_RS34715 PF13186 Iron-sulfur cluster-binding domain CDO28_RS34715 PF04055 Radical SAM superfamily