CDO28_RS00020	PWY-5381	pyridine nucleotide cycling (plants)
CDO28_RS00020	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CDO28_RS00050	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CDO28_RS00050	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CDO28_RS00060	PWY-6157	autoinducer AI-1 biosynthesis
CDO28_RS00070	PWY-1281	sulfoacetaldehyde degradation I
CDO28_RS00070	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CDO28_RS00070	PWY-5482	pyruvate fermentation to acetate II
CDO28_RS00070	PWY-5485	pyruvate fermentation to acetate IV
CDO28_RS00070	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS00070	PWY-6637	sulfolactate degradation II
CDO28_RS00070	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS00090	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS00090	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS00090	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS00090	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS00090	PWY-5723	Rubisco shunt
CDO28_RS00090	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS00090	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS00090	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS00090	PWY-7003	glycerol degradation to butanol
CDO28_RS00090	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS00090	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS00125	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CDO28_RS00125	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CDO28_RS00150	PWY-6004	glycine betaine biosynthesis V (from glycine)
CDO28_RS00165	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS00165	PWY-6692	Fe(II) oxidation
CDO28_RS00165	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
CDO28_RS00165	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS00210	PWY-6614	tetrahydrofolate biosynthesis
CDO28_RS00215	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CDO28_RS00215	PWY-6148	tetrahydromethanopterin biosynthesis
CDO28_RS00215	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CDO28_RS00215	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CDO28_RS00220	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CDO28_RS00220	PWY-6148	tetrahydromethanopterin biosynthesis
CDO28_RS00220	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
CDO28_RS00220	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CDO28_RS00260	PWY-6019	pseudouridine degradation
CDO28_RS00305	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS00305	PWY-6549	L-glutamine biosynthesis III
CDO28_RS00305	PWY-6728	methylaspartate cycle
CDO28_RS00305	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS00305	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS00305	PWY-7254	TCA cycle VII (acetate-producers)
CDO28_RS00305	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CDO28_RS00315	PWY-6004	glycine betaine biosynthesis V (from glycine)
CDO28_RS00320	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS00320	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS00375	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS00375	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CDO28_RS00375	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CDO28_RS00400	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS00400	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CDO28_RS00400	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CDO28_RS00405	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS00405	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CDO28_RS00405	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CDO28_RS00410	PWY-6123	inosine-5'-phosphate biosynthesis I
CDO28_RS00410	PWY-6124	inosine-5'-phosphate biosynthesis II
CDO28_RS00410	PWY-7234	inosine-5'-phosphate biosynthesis III
CDO28_RS00445	PWY-7701	CDO28_RS00445
CDO28_RS00480	PWY-6123	inosine-5'-phosphate biosynthesis I
CDO28_RS00480	PWY-6124	inosine-5'-phosphate biosynthesis II
CDO28_RS00480	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS00480	PWY-7234	inosine-5'-phosphate biosynthesis III
CDO28_RS00495	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS00495	PWY-5723	Rubisco shunt
CDO28_RS00500	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS00595	PWY-6823	molybdenum cofactor biosynthesis
CDO28_RS00595	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS00595	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS00595	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CDO28_RS00615	PWY-6823	molybdenum cofactor biosynthesis
CDO28_RS00615	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS00615	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS00615	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
CDO28_RS00700	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CDO28_RS00705	PWY-5386	methylglyoxal degradation I
CDO28_RS00845	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS00845	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS00845	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS00995	PWY-6826	phosphatidylcholine biosynthesis VI
CDO28_RS01040	PWY-6823	molybdenum cofactor biosynthesis
CDO28_RS01070	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CDO28_RS01070	PWY-5667	CDP-diacylglycerol biosynthesis I
CDO28_RS01070	PWY-6453	stigma estolide biosynthesis
CDO28_RS01070	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
CDO28_RS01070	PWY-7587	oleate biosynthesis III (cyanobacteria)
CDO28_RS01075	PWY-6749	CMP-legionaminate biosynthesis I
CDO28_RS01165	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS01165	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS01165	PWY-6549	L-glutamine biosynthesis III
CDO28_RS01165	PWY-6963	ammonia assimilation cycle I
CDO28_RS01165	PWY-6964	ammonia assimilation cycle II
CDO28_RS01175	PWY-6938	NADH repair
CDO28_RS01190	PWY-7731	CDO28_RS01190
CDO28_RS01360	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CDO28_RS01360	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CDO28_RS01730	PWY-5350	thiosulfate disproportionation III (rhodanese)
CDO28_RS01850	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS01850	PWY-5686	UMP biosynthesis
CDO28_RS01850	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS02130	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CDO28_RS02130	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CDO28_RS02135	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CDO28_RS02135	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS02135	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS02135	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CDO28_RS02135	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CDO28_RS02135	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CDO28_RS02185	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS02245	PWY-6700	queuosine biosynthesis
CDO28_RS02250	PWY-6700	queuosine biosynthesis
CDO28_RS02300	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS02300	PWY-5686	UMP biosynthesis
CDO28_RS02300	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS02415	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CDO28_RS02415	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS02415	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CDO28_RS02415	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CDO28_RS02415	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS02415	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS02415	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS02415	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CDO28_RS02700	PWY-5381	pyridine nucleotide cycling (plants)
CDO28_RS02700	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS02700	PWY-6596	adenosine nucleotides degradation I
CDO28_RS02700	PWY-6606	guanosine nucleotides degradation II
CDO28_RS02700	PWY-6607	guanosine nucleotides degradation I
CDO28_RS02700	PWY-6608	guanosine nucleotides degradation III
CDO28_RS02700	PWY-7185	UTP and CTP dephosphorylation I
CDO28_RS02705	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CDO28_RS02835	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CDO28_RS02835	PWY-622	starch biosynthesis
CDO28_RS02850	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS02850	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS02850	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS02850	PWY-5994	palmitate biosynthesis I (animals and fungi)
CDO28_RS02850	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS02850	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS02850	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS02850	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS02850	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS02850	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS02850	PWYG-321	mycolate biosynthesis
CDO28_RS02870	PWY-5667	CDP-diacylglycerol biosynthesis I
CDO28_RS02870	PWY-5981	CDP-diacylglycerol biosynthesis III
CDO28_RS02960	PWY-6936	seleno-amino acid biosynthesis
CDO28_RS02960	PWY-7274	D-cycloserine biosynthesis
CDO28_RS02980	PWY-6936	seleno-amino acid biosynthesis
CDO28_RS03020	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS03030	PWY-5194	siroheme biosynthesis
CDO28_RS03030	PWY-5441	S-methyl-L-methionine cycle
CDO28_RS03030	PWY-702	L-methionine biosynthesis II
CDO28_RS03030	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CDO28_RS03105	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS03125	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CDO28_RS03125	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CDO28_RS03135	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CDO28_RS03135	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CDO28_RS03170	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS03170	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS03170	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS03170	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS03170	PWY-5723	Rubisco shunt
CDO28_RS03170	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS03170	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS03170	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS03170	PWY-7003	glycerol degradation to butanol
CDO28_RS03170	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS03170	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS03175	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CDO28_RS03175	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
CDO28_RS03185	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CDO28_RS03185	PWY-7177	UTP and CTP dephosphorylation II
CDO28_RS03185	PWY-7185	UTP and CTP dephosphorylation I
CDO28_RS03195	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS03195	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS03195	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS03195	PWY-7003	glycerol degradation to butanol
CDO28_RS03285	PWY-5663	tetrahydrobiopterin biosynthesis I
CDO28_RS03285	PWY-5664	tetrahydrobiopterin biosynthesis II
CDO28_RS03285	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
CDO28_RS03285	PWY-6703	preQ<sub>0</sub> biosynthesis
CDO28_RS03285	PWY-6983	tetrahydrobiopterin biosynthesis III
CDO28_RS03285	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CDO28_RS03375	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS03425	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
CDO28_RS03425	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
CDO28_RS03435	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS03435	PWY-3162	L-tryptophan degradation V (side chain pathway)
CDO28_RS03435	PWY-5057	L-valine degradation II
CDO28_RS03435	PWY-5076	L-leucine degradation III
CDO28_RS03435	PWY-5078	L-isoleucine degradation II
CDO28_RS03435	PWY-5079	L-phenylalanine degradation III
CDO28_RS03435	PWY-5082	L-methionine degradation III
CDO28_RS03435	PWY-5480	pyruvate fermentation to ethanol I
CDO28_RS03435	PWY-5486	pyruvate fermentation to ethanol II
CDO28_RS03435	PWY-5751	phenylethanol biosynthesis
CDO28_RS03435	PWY-6313	serotonin degradation
CDO28_RS03435	PWY-6333	acetaldehyde biosynthesis I
CDO28_RS03435	PWY-6342	noradrenaline and adrenaline degradation
CDO28_RS03435	PWY-6454	vancomycin resistance I
CDO28_RS03435	PWY-6587	pyruvate fermentation to ethanol III
CDO28_RS03435	PWY-6802	salidroside biosynthesis
CDO28_RS03435	PWY-6871	3-methylbutanol biosynthesis
CDO28_RS03435	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS03435	PWY-7013	L-1,2-propanediol degradation
CDO28_RS03435	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS03435	PWY-7118	chitin degradation to ethanol
CDO28_RS03435	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CDO28_RS03450	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS03525	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS03765	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CDO28_RS03765	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CDO28_RS03765	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CDO28_RS03845	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS03845	PWY-6416	quinate degradation II
CDO28_RS03845	PWY-6707	gallate biosynthesis
CDO28_RS03890	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CDO28_RS03930	PWY-5686	UMP biosynthesis
CDO28_RS03935	PWY-5686	UMP biosynthesis
CDO28_RS04045	PWY-5741	ethylmalonyl-CoA pathway
CDO28_RS04045	PWY-5743	3-hydroxypropanoate cycle
CDO28_RS04045	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS04045	PWY-6728	methylaspartate cycle
CDO28_RS04045	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CDO28_RS04230	PWY-5692	allantoin degradation to glyoxylate II
CDO28_RS04230	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CDO28_RS04235	PWY-5344	L-homocysteine biosynthesis
CDO28_RS04235	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
CDO28_RS04275	PWY-40	putrescine biosynthesis I
CDO28_RS04275	PWY-6305	putrescine biosynthesis IV
CDO28_RS04280	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS04280	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS04325	PWY-6655	xanthan biosynthesis
CDO28_RS04325	PWY-6658	acetan biosynthesis
CDO28_RS04375	PWY-4381	fatty acid biosynthesis initiation I
CDO28_RS04415	PWY-6167	flavin biosynthesis II (archaea)
CDO28_RS04415	PWY-6168	flavin biosynthesis III (fungi)
CDO28_RS04435	PWY-6167	flavin biosynthesis II (archaea)
CDO28_RS04435	PWY-6168	flavin biosynthesis III (fungi)
CDO28_RS04435	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS04440	PWY-5525	D-glucuronate degradation I
CDO28_RS04450	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS04450	PWY-181	photorespiration
CDO28_RS04450	PWY-2161	folate polyglutamylation
CDO28_RS04450	PWY-2201	folate transformations I
CDO28_RS04450	PWY-3661	glycine betaine degradation I
CDO28_RS04450	PWY-3661-1	glycine betaine degradation II (mammalian)
CDO28_RS04450	PWY-3841	folate transformations II
CDO28_RS04450	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS04470	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CDO28_RS04470	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CDO28_RS04575	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS04575	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CDO28_RS04575	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CDO28_RS04580	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS04580	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CDO28_RS04640	PWY-5269	cardiolipin biosynthesis II
CDO28_RS04640	PWY-5668	cardiolipin biosynthesis I
CDO28_RS04650	PWY-6823	molybdenum cofactor biosynthesis
CDO28_RS04675	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CDO28_RS04675	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
CDO28_RS04675	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS04675	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS04675	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
CDO28_RS04675	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CDO28_RS04675	PWY-7205	CMP phosphorylation
CDO28_RS04675	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CDO28_RS04675	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS04675	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS04675	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS04675	PWY-7224	purine deoxyribonucleosides salvage
CDO28_RS04675	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS04675	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
CDO28_RS04755	PWY-7294	xylose degradation IV
CDO28_RS04755	PWY-7295	L-arabinose degradation IV
CDO28_RS04770	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS04795	PWY-5367	petroselinate biosynthesis
CDO28_RS04795	PWY-5515	L-arabinose degradation II
CDO28_RS04795	PWY-5525	D-glucuronate degradation I
CDO28_RS04795	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS04795	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS04795	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS04795	PWY-5994	palmitate biosynthesis I (animals and fungi)
CDO28_RS04795	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS04795	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS04795	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS04795	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS04795	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS04795	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS04795	PWYG-321	mycolate biosynthesis
CDO28_RS04800	PWY-4381	fatty acid biosynthesis initiation I
CDO28_RS04800	PWY-6799	fatty acid biosynthesis (plant mitochondria)
CDO28_RS04800	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS04870	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CDO28_RS04885	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS04885	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CDO28_RS04885	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CDO28_RS04885	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CDO28_RS04895	PWY-5669	phosphatidylethanolamine biosynthesis I
CDO28_RS04900	PWY-5669	phosphatidylethanolamine biosynthesis I
CDO28_RS04925	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS04925	PWY-6871	3-methylbutanol biosynthesis
CDO28_RS04935	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS04940	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS04945	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS05025	PWY-6854	ethylene biosynthesis III (microbes)
CDO28_RS05030	PWY-5316	nicotine biosynthesis
CDO28_RS05030	PWY-5381	pyridine nucleotide cycling (plants)
CDO28_RS05030	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CDO28_RS05030	PWY-7342	superpathway of nicotine biosynthesis
CDO28_RS05035	PWY-5316	nicotine biosynthesis
CDO28_RS05035	PWY-7342	superpathway of nicotine biosynthesis
CDO28_RS05040	PWY-5316	nicotine biosynthesis
CDO28_RS05040	PWY-7342	superpathway of nicotine biosynthesis
CDO28_RS05100	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
CDO28_RS05135	PWY-4202	arsenate detoxification I (glutaredoxin)
CDO28_RS05135	PWY-4621	arsenate detoxification II (glutaredoxin)
CDO28_RS05160	PWY-6012	acyl carrier protein metabolism I
CDO28_RS05160	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
CDO28_RS05215	PWY-2941	L-lysine biosynthesis II
CDO28_RS05215	PWY-2942	L-lysine biosynthesis III
CDO28_RS05215	PWY-5097	L-lysine biosynthesis VI
CDO28_RS05305	PWY-6617	adenosine nucleotides degradation III
CDO28_RS05665	PWY-6854	ethylene biosynthesis III (microbes)
CDO28_RS05695	PWY-7425	2-chloroacrylate degradation I
CDO28_RS05700	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CDO28_RS05700	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
CDO28_RS05700	PWY-6936	seleno-amino acid biosynthesis
CDO28_RS05700	PWY-702	L-methionine biosynthesis II
CDO28_RS05805	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS05805	PWY-7494	choline degradation IV
CDO28_RS05815	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS05815	PWY-7494	choline degradation IV
CDO28_RS05835	PWY-5278	sulfite oxidation III
CDO28_RS05835	PWY-5340	sulfate activation for sulfonation
CDO28_RS05835	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS05835	PWY-6932	selenate reduction
CDO28_RS05840	PWY-5278	sulfite oxidation III
CDO28_RS05840	PWY-5340	sulfate activation for sulfonation
CDO28_RS05840	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS05840	PWY-6932	selenate reduction
CDO28_RS05900	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CDO28_RS05900	PWY-6549	L-glutamine biosynthesis III
CDO28_RS05900	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CDO28_RS05900	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS06000	PWY-702	L-methionine biosynthesis II
CDO28_RS06045	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS06045	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS06045	PWY-6692	Fe(II) oxidation
CDO28_RS06045	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS06065	PWY-6167	flavin biosynthesis II (archaea)
CDO28_RS06065	PWY-6168	flavin biosynthesis III (fungi)
CDO28_RS06065	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
CDO28_RS06070	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS06085	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS06085	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS06085	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS06085	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS06085	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS06085	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS06085	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS06085	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS06085	PWYG-321	mycolate biosynthesis
CDO28_RS06100	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CDO28_RS06100	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CDO28_RS06175	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS06175	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS06175	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS06295	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
CDO28_RS06295	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
CDO28_RS06295	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
CDO28_RS06365	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS06465	PWY-7130	L-glucose degradation
CDO28_RS06470	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS06470	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS06470	PWY-7242	D-fructuronate degradation
CDO28_RS06470	PWY-7310	D-glucosaminate degradation
CDO28_RS06470	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CDO28_RS06480	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS06480	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS06480	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS06480	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS06495	PWY-5250	methanogenesis from trimethylamine
CDO28_RS06540	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
CDO28_RS06580	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS06610	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
CDO28_RS06610	PWY-6167	flavin biosynthesis II (archaea)
CDO28_RS06610	PWY-6168	flavin biosynthesis III (fungi)
CDO28_RS06735	PWY-2201	folate transformations I
CDO28_RS06740	PWY-6840	homoglutathione biosynthesis
CDO28_RS06740	PWY-7255	ergothioneine biosynthesis I (bacteria)
CDO28_RS06790	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS06790	PWY-6596	adenosine nucleotides degradation I
CDO28_RS06790	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS06990	PWY-5642	2,4-dinitrotoluene degradation
CDO28_RS06990	PWY-6373	acrylate degradation
CDO28_RS07065	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS07100	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS07100	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS07100	PWY-6549	L-glutamine biosynthesis III
CDO28_RS07100	PWY-6963	ammonia assimilation cycle I
CDO28_RS07100	PWY-6964	ammonia assimilation cycle II
CDO28_RS07110	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CDO28_RS07115	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CDO28_RS07115	PWY-6855	chitin degradation I (archaea)
CDO28_RS07115	PWY-6906	chitin derivatives degradation
CDO28_RS07120	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS07120	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS07120	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS07120	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS07170	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CDO28_RS07170	PWY-2201	folate transformations I
CDO28_RS07170	PWY-3841	folate transformations II
CDO28_RS07170	PWY-5030	L-histidine degradation III
CDO28_RS07170	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS07170	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CDO28_RS07350	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS07615	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS07615	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS07675	PWY-5381	pyridine nucleotide cycling (plants)
CDO28_RS07790	PWY-3461	L-tyrosine biosynthesis II
CDO28_RS07790	PWY-3462	L-phenylalanine biosynthesis II
CDO28_RS07790	PWY-6120	L-tyrosine biosynthesis III
CDO28_RS07790	PWY-6406	salicylate biosynthesis I
CDO28_RS07790	PWY-6627	salinosporamide A biosynthesis
CDO28_RS07790	PWY-7626	bacilysin biosynthesis
CDO28_RS07795	PWY-3821	galactose degradation III
CDO28_RS07795	PWY-6317	galactose degradation I (Leloir pathway)
CDO28_RS07795	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CDO28_RS07795	PWY-6527	stachyose degradation
CDO28_RS07795	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CDO28_RS07795	PWY-7344	UDP-D-galactose biosynthesis
CDO28_RS07830	PWY-5686	UMP biosynthesis
CDO28_RS07915	PWY-1361	benzoyl-CoA degradation I (aerobic)
CDO28_RS07915	PWY-5109	2-methylbutanoate biosynthesis
CDO28_RS07915	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CDO28_RS07915	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CDO28_RS07915	PWY-5177	glutaryl-CoA degradation
CDO28_RS07915	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS07915	PWY-6435	4-hydroxybenzoate biosynthesis V
CDO28_RS07915	PWY-6583	pyruvate fermentation to butanol I
CDO28_RS07915	PWY-6863	pyruvate fermentation to hexanol
CDO28_RS07915	PWY-6883	pyruvate fermentation to butanol II
CDO28_RS07915	PWY-6944	androstenedione degradation
CDO28_RS07915	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CDO28_RS07915	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CDO28_RS07915	PWY-7007	methyl ketone biosynthesis
CDO28_RS07915	PWY-7046	4-coumarate degradation (anaerobic)
CDO28_RS07915	PWY-7094	fatty acid salvage
CDO28_RS07915	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CDO28_RS07915	PWY-735	jasmonic acid biosynthesis
CDO28_RS07915	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CDO28_RS07915	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CDO28_RS07915	PWY-7726	CDO28_RS07915
CDO28_RS07965	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS07990	PWY-4981	L-proline biosynthesis II (from arginine)
CDO28_RS07990	PWY-4984	urea cycle
CDO28_RS07990	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS08050	PWY-723	alkylnitronates degradation
CDO28_RS08065	PWY-5667	CDP-diacylglycerol biosynthesis I
CDO28_RS08065	PWY-5981	CDP-diacylglycerol biosynthesis III
CDO28_RS08095	PWY-3801	sucrose degradation II (sucrose synthase)
CDO28_RS08095	PWY-5054	sorbitol biosynthesis I
CDO28_RS08095	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CDO28_RS08095	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CDO28_RS08095	PWY-5659	GDP-mannose biosynthesis
CDO28_RS08095	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS08095	PWY-621	sucrose degradation III (sucrose invertase)
CDO28_RS08095	PWY-622	starch biosynthesis
CDO28_RS08095	PWY-6981	chitin biosynthesis
CDO28_RS08095	PWY-6992	1,5-anhydrofructose degradation
CDO28_RS08095	PWY-7238	sucrose biosynthesis II
CDO28_RS08095	PWY-7347	sucrose biosynthesis III
CDO28_RS08095	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS08105	PWY-5686	UMP biosynthesis
CDO28_RS08110	PWY-5686	UMP biosynthesis
CDO28_RS08185	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
CDO28_RS08185	PWY-6853	ethylene biosynthesis II (microbes)
CDO28_RS08185	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CDO28_RS08205	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS08350	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS08350	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS08485	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CDO28_RS08485	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
CDO28_RS08530	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CDO28_RS08530	PWY-5368	dimorphecolate biosynthesis
CDO28_RS08530	PWY-5995	linoleate biosynthesis I (plants)
CDO28_RS08530	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CDO28_RS08530	PWY-6803	phosphatidylcholine acyl editing
CDO28_RS08530	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CDO28_RS08530	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CDO28_RS08530	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CDO28_RS08530	PWY-7470	phosphatidylcholine biosynthesis VII
CDO28_RS08530	PWY-7618	ricinoleate biosynthesis
CDO28_RS08570	PWY-1281	sulfoacetaldehyde degradation I
CDO28_RS08570	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CDO28_RS08570	PWY-5482	pyruvate fermentation to acetate II
CDO28_RS08570	PWY-5485	pyruvate fermentation to acetate IV
CDO28_RS08570	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS08570	PWY-6637	sulfolactate degradation II
CDO28_RS08570	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS08675	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CDO28_RS08730	PWY-5839	menaquinol-7 biosynthesis
CDO28_RS08730	PWY-5844	menaquinol-9 biosynthesis
CDO28_RS08730	PWY-5849	menaquinol-6 biosynthesis
CDO28_RS08730	PWY-5890	menaquinol-10 biosynthesis
CDO28_RS08730	PWY-5891	menaquinol-11 biosynthesis
CDO28_RS08730	PWY-5892	menaquinol-12 biosynthesis
CDO28_RS08730	PWY-5895	menaquinol-13 biosynthesis
CDO28_RS08805	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS08810	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS08835	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
CDO28_RS08835	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS08835	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS08835	PWY-7206	pyrimidine deoxyribonucleotides dephosphorylation
CDO28_RS08860	PWY-6936	seleno-amino acid biosynthesis
CDO28_RS08880	PWY-2201	folate transformations I
CDO28_RS08900	PWY-5686	UMP biosynthesis
CDO28_RS08920	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
CDO28_RS08930	PWY-6700	queuosine biosynthesis
CDO28_RS08945	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS08990	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS09025	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS09025	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
CDO28_RS09025	PWY-6638	sulfolactate degradation III
CDO28_RS09025	PWY-6642	(<i>R</i>)-cysteate degradation
CDO28_RS09025	PWY-6643	coenzyme M biosynthesis II
CDO28_RS09025	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CDO28_RS09025	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS09025	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CDO28_RS09310	PWY-7205	CMP phosphorylation
CDO28_RS09315	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS09345	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS09345	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS09345	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS09345	PWY-5994	palmitate biosynthesis I (animals and fungi)
CDO28_RS09345	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS09345	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS09345	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS09345	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS09345	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS09345	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS09345	PWYG-321	mycolate biosynthesis
CDO28_RS09355	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS09355	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS09355	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS09355	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS09355	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS09355	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS09355	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS09355	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS09355	PWYG-321	mycolate biosynthesis
CDO28_RS09450	PWY-5381	pyridine nucleotide cycling (plants)
CDO28_RS09470	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
CDO28_RS09475	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
CDO28_RS09485	PWY-5057	L-valine degradation II
CDO28_RS09485	PWY-5076	L-leucine degradation III
CDO28_RS09485	PWY-5078	L-isoleucine degradation II
CDO28_RS09485	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS09485	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS09485	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS09485	PWY-5108	L-isoleucine biosynthesis V
CDO28_RS09570	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CDO28_RS09590	PWY-6906	chitin derivatives degradation
CDO28_RS09590	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
CDO28_RS09590	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
CDO28_RS09780	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS09780	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS09785	PWY-2941	L-lysine biosynthesis II
CDO28_RS09785	PWY-2942	L-lysine biosynthesis III
CDO28_RS09785	PWY-5097	L-lysine biosynthesis VI
CDO28_RS09795	PWY-2722	trehalose degradation IV
CDO28_RS09795	PWY-2723	trehalose degradation V
CDO28_RS09795	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CDO28_RS09795	PWY-5661	GDP-glucose biosynthesis
CDO28_RS09795	PWY-621	sucrose degradation III (sucrose invertase)
CDO28_RS09795	PWY-7238	sucrose biosynthesis II
CDO28_RS09795	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS09920	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CDO28_RS09925	PWY-6610	adenine and adenosine salvage IV
CDO28_RS09930	PWY-7183	pyrimidine nucleobases salvage I
CDO28_RS09935	PWY-7181	pyrimidine deoxyribonucleosides degradation
CDO28_RS09940	PWY-4202	arsenate detoxification I (glutaredoxin)
CDO28_RS09940	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS09940	PWY-6608	guanosine nucleotides degradation III
CDO28_RS09940	PWY-6609	adenine and adenosine salvage III
CDO28_RS09940	PWY-6611	adenine and adenosine salvage V
CDO28_RS09940	PWY-6620	guanine and guanosine salvage
CDO28_RS09940	PWY-6627	salinosporamide A biosynthesis
CDO28_RS09940	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
CDO28_RS09940	PWY-7179	purine deoxyribonucleosides degradation I
CDO28_RS09940	PWY-7179-1	purine deoxyribonucleosides degradation
CDO28_RS09945	PWY-6556	pyrimidine ribonucleosides salvage II
CDO28_RS09945	PWY-7181	pyrimidine deoxyribonucleosides degradation
CDO28_RS09945	PWY-7193	pyrimidine ribonucleosides salvage I
CDO28_RS09945	PWY-7199	pyrimidine deoxyribonucleosides salvage
CDO28_RS10060	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS10060	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS10060	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS10060	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS10110	PWY-2201	folate transformations I
CDO28_RS10110	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS10150	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS10150	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS10150	PWY-6549	L-glutamine biosynthesis III
CDO28_RS10150	PWY-6963	ammonia assimilation cycle I
CDO28_RS10150	PWY-6964	ammonia assimilation cycle II
CDO28_RS10175	PWY-3661	glycine betaine degradation I
CDO28_RS10175	PWY-4722	creatinine degradation II
CDO28_RS10180	PWY-3661	glycine betaine degradation I
CDO28_RS10180	PWY-4722	creatinine degradation II
CDO28_RS10185	PWY-3661	glycine betaine degradation I
CDO28_RS10185	PWY-4722	creatinine degradation II
CDO28_RS10190	PWY-3661	glycine betaine degradation I
CDO28_RS10190	PWY-4722	creatinine degradation II
CDO28_RS10195	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CDO28_RS10195	PWY-2201	folate transformations I
CDO28_RS10195	PWY-3841	folate transformations II
CDO28_RS10195	PWY-5030	L-histidine degradation III
CDO28_RS10195	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS10195	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
CDO28_RS10325	PWY-6728	methylaspartate cycle
CDO28_RS10325	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS10325	PWY-7118	chitin degradation to ethanol
CDO28_RS10325	PWY-7294	xylose degradation IV
CDO28_RS10325	PWY-7295	L-arabinose degradation IV
CDO28_RS10390	PWY-3961	phosphopantothenate biosynthesis II
CDO28_RS10410	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CDO28_RS10410	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS10445	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
CDO28_RS10485	PWY-2161	folate polyglutamylation
CDO28_RS10490	PWY-4381	fatty acid biosynthesis initiation I
CDO28_RS10490	PWY-5743	3-hydroxypropanoate cycle
CDO28_RS10490	PWY-5744	glyoxylate assimilation
CDO28_RS10490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS10490	PWY-6679	jadomycin biosynthesis
CDO28_RS10490	PWY-6722	candicidin biosynthesis
CDO28_RS10490	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS10620	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS10635	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
CDO28_RS10635	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
CDO28_RS10645	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS10690	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CDO28_RS10695	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CDO28_RS10695	PWY-7118	chitin degradation to ethanol
CDO28_RS10710	PWY-6672	<i>cis</i>-genanyl-CoA degradation
CDO28_RS10710	PWY-7118	chitin degradation to ethanol
CDO28_RS10725	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS10735	PWY-6123	inosine-5'-phosphate biosynthesis I
CDO28_RS10735	PWY-6124	inosine-5'-phosphate biosynthesis II
CDO28_RS10735	PWY-7234	inosine-5'-phosphate biosynthesis III
CDO28_RS10750	PWY-5022	4-aminobutanoate degradation V
CDO28_RS10750	PWY-6728	methylaspartate cycle
CDO28_RS10750	PWY-7126	ethylene biosynthesis IV
CDO28_RS10755	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CDO28_RS10755	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CDO28_RS10760	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CDO28_RS10760	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS10760	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CDO28_RS10760	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS10775	PWY-2941	L-lysine biosynthesis II
CDO28_RS10775	PWY-2942	L-lysine biosynthesis III
CDO28_RS10775	PWY-5097	L-lysine biosynthesis VI
CDO28_RS10775	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS10775	PWY-6559	spermidine biosynthesis II
CDO28_RS10775	PWY-6562	norspermidine biosynthesis
CDO28_RS10775	PWY-7153	grixazone biosynthesis
CDO28_RS10775	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS10805	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CDO28_RS10880	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS10880	PWY-7494	choline degradation IV
CDO28_RS10955	PWY-5750	itaconate biosynthesis
CDO28_RS10955	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS10955	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
CDO28_RS11030	PWY-5676	acetyl-CoA fermentation to butanoate II
CDO28_RS11030	PWY-5741	ethylmalonyl-CoA pathway
CDO28_RS11030	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CDO28_RS11085	PWY-6898	thiamin salvage III
CDO28_RS11085	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CDO28_RS11085	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CDO28_RS11085	PWY-7356	thiamin salvage IV (yeast)
CDO28_RS11115	PWY-6829	tRNA methylation (yeast)
CDO28_RS11115	PWY-7285	methylwyosine biosynthesis
CDO28_RS11115	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
CDO28_RS11130	PWY-3461	L-tyrosine biosynthesis II
CDO28_RS11130	PWY-3462	L-phenylalanine biosynthesis II
CDO28_RS11130	PWY-6120	L-tyrosine biosynthesis III
CDO28_RS11130	PWY-6627	salinosporamide A biosynthesis
CDO28_RS11130	PWY-7626	bacilysin biosynthesis
CDO28_RS11140	PWY-2941	L-lysine biosynthesis II
CDO28_RS11140	PWY-5097	L-lysine biosynthesis VI
CDO28_RS11250	PWY-7158	L-phenylalanine degradation V
CDO28_RS11270	PWY-2201	folate transformations I
CDO28_RS11295	PWY-4983	L-citrulline-nitric oxide cycle
CDO28_RS11295	PWY-4984	urea cycle
CDO28_RS11295	PWY-5	canavanine biosynthesis
CDO28_RS11295	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS11295	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS11450	PWY-6317	galactose degradation I (Leloir pathway)
CDO28_RS11530	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS11540	PWY-5381	pyridine nucleotide cycling (plants)
CDO28_RS11540	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
CDO28_RS11545	PWY-3341	L-proline biosynthesis III
CDO28_RS11545	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CDO28_RS11550	PWY-3341	L-proline biosynthesis III
CDO28_RS11550	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CDO28_RS11600	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CDO28_RS11665	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CDO28_RS11665	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CDO28_RS11670	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CDO28_RS11670	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CDO28_RS11675	PWY-5353	arachidonate biosynthesis I (lower eukaryotes)
CDO28_RS11675	PWY-5368	dimorphecolate biosynthesis
CDO28_RS11675	PWY-5995	linoleate biosynthesis I (plants)
CDO28_RS11675	PWY-6433	hydroxylated fatty acid biosynthesis (plants)
CDO28_RS11675	PWY-6803	phosphatidylcholine acyl editing
CDO28_RS11675	PWY-6958	icosapentaenoate biosynthesis I (lower eukaryotes)
CDO28_RS11675	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
CDO28_RS11675	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
CDO28_RS11675	PWY-7470	phosphatidylcholine biosynthesis VII
CDO28_RS11675	PWY-7618	ricinoleate biosynthesis
CDO28_RS11680	PWY-5667	CDP-diacylglycerol biosynthesis I
CDO28_RS11680	PWY-5981	CDP-diacylglycerol biosynthesis III
CDO28_RS11715	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS11715	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CDO28_RS11715	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CDO28_RS11715	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS11715	PWY-6728	methylaspartate cycle
CDO28_RS11715	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS11715	PWY-7254	TCA cycle VII (acetate-producers)
CDO28_RS11715	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS11720	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS11720	PWY-4302	aerobic respiration III (alternative oxidase pathway)
CDO28_RS11720	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CDO28_RS11720	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS11720	PWY-6728	methylaspartate cycle
CDO28_RS11720	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS11720	PWY-7254	TCA cycle VII (acetate-producers)
CDO28_RS11720	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS11785	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS11785	PWY-5392	reductive TCA cycle II
CDO28_RS11785	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CDO28_RS11785	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS11785	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS11785	PWY-6728	methylaspartate cycle
CDO28_RS11785	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS11785	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CDO28_RS11785	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CDO28_RS11790	PWY-5392	reductive TCA cycle II
CDO28_RS11790	PWY-5537	pyruvate fermentation to acetate V
CDO28_RS11790	PWY-5538	pyruvate fermentation to acetate VI
CDO28_RS11790	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS11790	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS11790	PWY-6728	methylaspartate cycle
CDO28_RS11790	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS11790	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CDO28_RS11795	PWY-5392	reductive TCA cycle II
CDO28_RS11795	PWY-5537	pyruvate fermentation to acetate V
CDO28_RS11795	PWY-5538	pyruvate fermentation to acetate VI
CDO28_RS11795	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS11795	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS11795	PWY-6728	methylaspartate cycle
CDO28_RS11795	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS11795	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CDO28_RS11800	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CDO28_RS11805	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CDO28_RS11825	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CDO28_RS11825	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CDO28_RS11865	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS11865	PWY-5723	Rubisco shunt
CDO28_RS11885	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS11895	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS11990	PWY-4261	glycerol degradation I
CDO28_RS11990	PWY-6118	glycerol-3-phosphate shuttle
CDO28_RS11990	PWY-6952	glycerophosphodiester degradation
CDO28_RS12025	PWY-1881	formate oxidation to CO<sub>2</sub>
CDO28_RS12025	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS12025	PWY-6696	oxalate degradation III
CDO28_RS12050	PWY-31	canavanine degradation
CDO28_RS12050	PWY-4984	urea cycle
CDO28_RS12050	PWY-6305	putrescine biosynthesis IV
CDO28_RS12050	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CDO28_RS12115	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CDO28_RS12115	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
CDO28_RS12120	PWY-7294	xylose degradation IV
CDO28_RS12120	PWY-7295	L-arabinose degradation IV
CDO28_RS12120	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS12165	PWY-2201	folate transformations I
CDO28_RS12165	PWY-3841	folate transformations II
CDO28_RS12175	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS12175	PWY-7494	choline degradation IV
CDO28_RS12420	PWY-2201	folate transformations I
CDO28_RS12420	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS12425	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CDO28_RS12425	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
CDO28_RS12440	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
CDO28_RS12480	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CDO28_RS12485	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS12495	PWY-5194	siroheme biosynthesis
CDO28_RS12495	PWY-5441	S-methyl-L-methionine cycle
CDO28_RS12495	PWY-702	L-methionine biosynthesis II
CDO28_RS12495	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CDO28_RS12510	PWY-2201	folate transformations I
CDO28_RS12510	PWY-3841	folate transformations II
CDO28_RS12510	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CDO28_RS12515	PWY-5194	siroheme biosynthesis
CDO28_RS12515	PWY-5441	S-methyl-L-methionine cycle
CDO28_RS12515	PWY-702	L-methionine biosynthesis II
CDO28_RS12515	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CDO28_RS12590	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
CDO28_RS12630	PWY-4261	glycerol degradation I
CDO28_RS12650	PWY-3121	linamarin degradation
CDO28_RS12650	PWY-5176	coumarin biosynthesis (via 2-coumarate)
CDO28_RS12650	PWY-6002	lotaustralin degradation
CDO28_RS12650	PWY-6788	cellulose degradation II (fungi)
CDO28_RS12650	PWY-7089	taxiphyllin bioactivation
CDO28_RS12650	PWY-7091	linustatin bioactivation
CDO28_RS12650	PWY-7092	neolinustatin bioactivation
CDO28_RS12685	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS12685	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS12685	PWY-7242	D-fructuronate degradation
CDO28_RS12685	PWY-7310	D-glucosaminate degradation
CDO28_RS12685	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CDO28_RS12765	PWY-2201	folate transformations I
CDO28_RS12765	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS12765	PWY-6167	flavin biosynthesis II (archaea)
CDO28_RS12795	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS12795	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS12795	PWY-6692	Fe(II) oxidation
CDO28_RS12795	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS12840	PWY-3661	glycine betaine degradation I
CDO28_RS12840	PWY-4722	creatinine degradation II
CDO28_RS12845	PWY-3661	glycine betaine degradation I
CDO28_RS12845	PWY-4722	creatinine degradation II
CDO28_RS12850	PWY-3661	glycine betaine degradation I
CDO28_RS12850	PWY-4722	creatinine degradation II
CDO28_RS12855	PWY-3661	glycine betaine degradation I
CDO28_RS12855	PWY-4722	creatinine degradation II
CDO28_RS12880	PWY-6749	CMP-legionaminate biosynthesis I
CDO28_RS12885	PWY-622	starch biosynthesis
CDO28_RS12890	PWY-622	starch biosynthesis
CDO28_RS12895	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
CDO28_RS12895	PWY-622	starch biosynthesis
CDO28_RS12900	PWY-5941	glycogen degradation II (eukaryotic)
CDO28_RS12900	PWY-6731	starch degradation III
CDO28_RS12900	PWY-6737	starch degradation V
CDO28_RS12900	PWY-7238	sucrose biosynthesis II
CDO28_RS12975	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS12980	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS12980	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS12980	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS12980	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS13080	PWY-3801	sucrose degradation II (sucrose synthase)
CDO28_RS13080	PWY-6527	stachyose degradation
CDO28_RS13080	PWY-7238	sucrose biosynthesis II
CDO28_RS13080	PWY-7343	UDP-glucose biosynthesis
CDO28_RS13130	PWY-5958	acridone alkaloid biosynthesis
CDO28_RS13130	PWY-6543	4-aminobenzoate biosynthesis
CDO28_RS13130	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CDO28_RS13130	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CDO28_RS13170	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS13170	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS13170	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS13170	PWY-5723	Rubisco shunt
CDO28_RS13170	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS13170	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS13170	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS13170	PWY-7003	glycerol degradation to butanol
CDO28_RS13170	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS13170	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CDO28_RS13190	PWY-6123	inosine-5'-phosphate biosynthesis I
CDO28_RS13190	PWY-7234	inosine-5'-phosphate biosynthesis III
CDO28_RS13215	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CDO28_RS13215	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CDO28_RS13215	PWY-6897	thiamin salvage II
CDO28_RS13215	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CDO28_RS13215	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CDO28_RS13215	PWY-7356	thiamin salvage IV (yeast)
CDO28_RS13215	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CDO28_RS13225	PWY-2301	<i>myo</i>-inositol biosynthesis
CDO28_RS13225	PWY-4702	phytate degradation I
CDO28_RS13225	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CDO28_RS13280	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS13280	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS13280	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS13280	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS13280	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS13285	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS13285	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS13285	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS13285	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS13285	PWY-7003	glycerol degradation to butanol
CDO28_RS13295	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS13295	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS13295	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS13295	PWY-7003	glycerol degradation to butanol
CDO28_RS13300	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS13300	PWY-5723	Rubisco shunt
CDO28_RS13300	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS13300	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS13300	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS13300	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS13450	PWY-6749	CMP-legionaminate biosynthesis I
CDO28_RS13480	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
CDO28_RS13715	PWY-4381	fatty acid biosynthesis initiation I
CDO28_RS13715	PWY-5743	3-hydroxypropanoate cycle
CDO28_RS13715	PWY-5744	glyoxylate assimilation
CDO28_RS13715	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS13715	PWY-6679	jadomycin biosynthesis
CDO28_RS13715	PWY-6722	candicidin biosynthesis
CDO28_RS13715	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS13740	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS13745	PWY-6164	3-dehydroquinate biosynthesis I
CDO28_RS13765	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CDO28_RS13770	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
CDO28_RS13805	PWY-5386	methylglyoxal degradation I
CDO28_RS13820	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CDO28_RS13865	PWY-6599	guanine and guanosine salvage II
CDO28_RS13865	PWY-6609	adenine and adenosine salvage III
CDO28_RS13865	PWY-6610	adenine and adenosine salvage IV
CDO28_RS13865	PWY-6620	guanine and guanosine salvage
CDO28_RS13885	PWY-2941	L-lysine biosynthesis II
CDO28_RS13885	PWY-2942	L-lysine biosynthesis III
CDO28_RS13885	PWY-5097	L-lysine biosynthesis VI
CDO28_RS13895	PWY-4983	L-citrulline-nitric oxide cycle
CDO28_RS13895	PWY-4984	urea cycle
CDO28_RS13895	PWY-5	canavanine biosynthesis
CDO28_RS13895	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS13895	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS13905	PWY-1361	benzoyl-CoA degradation I (aerobic)
CDO28_RS13905	PWY-5109	2-methylbutanoate biosynthesis
CDO28_RS13905	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CDO28_RS13905	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CDO28_RS13905	PWY-5177	glutaryl-CoA degradation
CDO28_RS13905	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS13905	PWY-6435	4-hydroxybenzoate biosynthesis V
CDO28_RS13905	PWY-6583	pyruvate fermentation to butanol I
CDO28_RS13905	PWY-6863	pyruvate fermentation to hexanol
CDO28_RS13905	PWY-6883	pyruvate fermentation to butanol II
CDO28_RS13905	PWY-6944	androstenedione degradation
CDO28_RS13905	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CDO28_RS13905	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CDO28_RS13905	PWY-7007	methyl ketone biosynthesis
CDO28_RS13905	PWY-7046	4-coumarate degradation (anaerobic)
CDO28_RS13905	PWY-7094	fatty acid salvage
CDO28_RS13905	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CDO28_RS13905	PWY-735	jasmonic acid biosynthesis
CDO28_RS13905	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CDO28_RS13905	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CDO28_RS13905	PWY-7726	CDO28_RS13905
CDO28_RS13925	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CDO28_RS13925	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CDO28_RS13925	PWY-6268	adenosylcobalamin salvage from cobalamin
CDO28_RS13925	PWY-6269	adenosylcobalamin salvage from cobinamide II
CDO28_RS14010	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS14020	PWY-6502	oxidized GTP and dGTP detoxification
CDO28_RS14060	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CDO28_RS14060	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CDO28_RS14060	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CDO28_RS14060	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
CDO28_RS14060	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
CDO28_RS14060	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
CDO28_RS14060	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
CDO28_RS14060	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CDO28_RS14060	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
CDO28_RS14060	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
CDO28_RS14070	PWY-2941	L-lysine biosynthesis II
CDO28_RS14070	PWY-2942	L-lysine biosynthesis III
CDO28_RS14070	PWY-5097	L-lysine biosynthesis VI
CDO28_RS14070	PWY-6559	spermidine biosynthesis II
CDO28_RS14070	PWY-6562	norspermidine biosynthesis
CDO28_RS14070	PWY-7153	grixazone biosynthesis
CDO28_RS14160	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS14160	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS14275	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS14275	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS14275	PWY-6549	L-glutamine biosynthesis III
CDO28_RS14275	PWY-6963	ammonia assimilation cycle I
CDO28_RS14275	PWY-6964	ammonia assimilation cycle II
CDO28_RS14320	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS14320	PWY-5723	Rubisco shunt
CDO28_RS14320	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS14320	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS14320	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS14320	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS14325	PWY-4261	glycerol degradation I
CDO28_RS14360	PWY-4261	glycerol degradation I
CDO28_RS14365	PWY-4261	glycerol degradation I
CDO28_RS14370	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CDO28_RS14395	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS14395	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS14395	PWY-7242	D-fructuronate degradation
CDO28_RS14395	PWY-7310	D-glucosaminate degradation
CDO28_RS14395	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CDO28_RS14400	PWY-3801	sucrose degradation II (sucrose synthase)
CDO28_RS14400	PWY-5054	sorbitol biosynthesis I
CDO28_RS14400	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CDO28_RS14400	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CDO28_RS14400	PWY-5659	GDP-mannose biosynthesis
CDO28_RS14400	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS14400	PWY-621	sucrose degradation III (sucrose invertase)
CDO28_RS14400	PWY-622	starch biosynthesis
CDO28_RS14400	PWY-6981	chitin biosynthesis
CDO28_RS14400	PWY-6992	1,5-anhydrofructose degradation
CDO28_RS14400	PWY-7238	sucrose biosynthesis II
CDO28_RS14400	PWY-7347	sucrose biosynthesis III
CDO28_RS14400	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS14590	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS14590	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS14590	PWY-6692	Fe(II) oxidation
CDO28_RS14590	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS14645	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS14645	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS14645	PWY-6549	L-glutamine biosynthesis III
CDO28_RS14645	PWY-6963	ammonia assimilation cycle I
CDO28_RS14645	PWY-6964	ammonia assimilation cycle II
CDO28_RS14690	PWY-40	putrescine biosynthesis I
CDO28_RS14690	PWY-6305	putrescine biosynthesis IV
CDO28_RS14825	PWY-5704	urea degradation II
CDO28_RS14835	PWY-5704	urea degradation II
CDO28_RS14850	PWY-5704	urea degradation II
CDO28_RS15010	PWY-6531	mannitol cycle
CDO28_RS15020	PWY-4261	glycerol degradation I
CDO28_RS15140	PWY-7533	gliotoxin biosynthesis
CDO28_RS15180	PWY-6610	adenine and adenosine salvage IV
CDO28_RS15220	PWY-7199	pyrimidine deoxyribonucleosides salvage
CDO28_RS15260	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
CDO28_RS15260	PWY-2161	folate polyglutamylation
CDO28_RS15260	PWY-2201	folate transformations I
CDO28_RS15260	PWY-3841	folate transformations II
CDO28_RS15275	PWY-5958	acridone alkaloid biosynthesis
CDO28_RS15275	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CDO28_RS15275	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CDO28_RS15285	PWY-6700	queuosine biosynthesis
CDO28_RS15325	PWY-6871	3-methylbutanol biosynthesis
CDO28_RS15370	PWY-4061	glutathione-mediated detoxification I
CDO28_RS15370	PWY-6842	glutathione-mediated detoxification II
CDO28_RS15370	PWY-7112	4-hydroxy-2-nonenal detoxification
CDO28_RS15370	PWY-7533	gliotoxin biosynthesis
CDO28_RS15420	PWY-6605	adenine and adenosine salvage II
CDO28_RS15420	PWY-6610	adenine and adenosine salvage IV
CDO28_RS15445	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
CDO28_RS15520	PWY-3341	L-proline biosynthesis III
CDO28_RS15520	PWY-4981	L-proline biosynthesis II (from arginine)
CDO28_RS15520	PWY-6344	L-ornithine degradation II (Stickland reaction)
CDO28_RS15620	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS15620	PWY-5686	UMP biosynthesis
CDO28_RS15620	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS15645	PWY-5515	L-arabinose degradation II
CDO28_RS15645	PWY-5525	D-glucuronate degradation I
CDO28_RS15645	PWY-7378	aminopropanol phosphate biosynthesis II
CDO28_RS15885	PWY-5250	methanogenesis from trimethylamine
CDO28_RS15990	PWY-5392	reductive TCA cycle II
CDO28_RS15990	PWY-5537	pyruvate fermentation to acetate V
CDO28_RS15990	PWY-5538	pyruvate fermentation to acetate VI
CDO28_RS15990	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS15990	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS15990	PWY-6728	methylaspartate cycle
CDO28_RS15990	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS15990	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CDO28_RS16005	PWY-1361	benzoyl-CoA degradation I (aerobic)
CDO28_RS16005	PWY-3602	L-carnitine degradation II
CDO28_RS16005	PWY-5109	2-methylbutanoate biosynthesis
CDO28_RS16005	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CDO28_RS16005	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CDO28_RS16005	PWY-5177	glutaryl-CoA degradation
CDO28_RS16005	PWY-5515	L-arabinose degradation II
CDO28_RS16005	PWY-5525	D-glucuronate degradation I
CDO28_RS16005	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS16005	PWY-6435	4-hydroxybenzoate biosynthesis V
CDO28_RS16005	PWY-6583	pyruvate fermentation to butanol I
CDO28_RS16005	PWY-6863	pyruvate fermentation to hexanol
CDO28_RS16005	PWY-6883	pyruvate fermentation to butanol II
CDO28_RS16005	PWY-6944	androstenedione degradation
CDO28_RS16005	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CDO28_RS16005	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CDO28_RS16005	PWY-7007	methyl ketone biosynthesis
CDO28_RS16005	PWY-7046	4-coumarate degradation (anaerobic)
CDO28_RS16005	PWY-7094	fatty acid salvage
CDO28_RS16005	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CDO28_RS16005	PWY-735	jasmonic acid biosynthesis
CDO28_RS16005	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CDO28_RS16005	PWY-7472	D-carnitine degradation II
CDO28_RS16005	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CDO28_RS16005	PWY-7726	CDO28_RS16005
CDO28_RS16080	PWY-4261	glycerol degradation I
CDO28_RS16095	PWY-4261	glycerol degradation I
CDO28_RS16095	PWY-6118	glycerol-3-phosphate shuttle
CDO28_RS16095	PWY-6952	glycerophosphodiester degradation
CDO28_RS16105	PWY-4261	glycerol degradation I
CDO28_RS16125	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS16125	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS16125	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS16125	PWY-7003	glycerol degradation to butanol
CDO28_RS16155	PWY-6167	flavin biosynthesis II (archaea)
CDO28_RS16155	PWY-6168	flavin biosynthesis III (fungi)
CDO28_RS16195	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS16195	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS16195	PWY-6549	L-glutamine biosynthesis III
CDO28_RS16195	PWY-6963	ammonia assimilation cycle I
CDO28_RS16195	PWY-6964	ammonia assimilation cycle II
CDO28_RS16270	PWY-2201	folate transformations I
CDO28_RS16270	PWY-3841	folate transformations II
CDO28_RS16320	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS16320	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS16320	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS16320	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS16355	PWY-2201	folate transformations I
CDO28_RS16375	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS16375	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS16380	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CDO28_RS16380	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CDO28_RS16380	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CDO28_RS16385	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS16385	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS16395	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CDO28_RS16395	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CDO28_RS16395	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CDO28_RS16395	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CDO28_RS16400	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS16400	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS16405	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS16405	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS16420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS16420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS16440	PWY-2201	folate transformations I
CDO28_RS16440	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS16470	PWY-6654	phosphopantothenate biosynthesis III
CDO28_RS16575	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
CDO28_RS16575	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
CDO28_RS16575	PWY-7717	CDO28_RS16575
CDO28_RS16575	PWY-7733	CDO28_RS16575
CDO28_RS16575	PWY-7734	CDO28_RS16575
CDO28_RS16655	PWY-3841	folate transformations II
CDO28_RS16655	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
CDO28_RS16655	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
CDO28_RS16655	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
CDO28_RS16655	PWY-7199	pyrimidine deoxyribonucleosides salvage
CDO28_RS16655	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
CDO28_RS16665	PWY-3841	folate transformations II
CDO28_RS16665	PWY-6614	tetrahydrofolate biosynthesis
CDO28_RS16705	PWY-2781	<i>cis</i>-zeatin biosynthesis
CDO28_RS16725	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS16725	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS16725	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS16725	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CDO28_RS16725	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CDO28_RS16725	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CDO28_RS16725	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS16730	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS16730	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS16730	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS16730	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
CDO28_RS16730	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
CDO28_RS16730	PWY-6389	(<i>S</i>)-acetoin biosynthesis
CDO28_RS16730	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS16760	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
CDO28_RS16760	PWY-581	indole-3-acetate biosynthesis II
CDO28_RS16760	PWY-7308	acrylonitrile degradation I
CDO28_RS16765	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
CDO28_RS16765	PWY-581	indole-3-acetate biosynthesis II
CDO28_RS16765	PWY-7308	acrylonitrile degradation I
CDO28_RS16770	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
CDO28_RS16770	PWY-581	indole-3-acetate biosynthesis II
CDO28_RS16770	PWY-7308	acrylonitrile degradation I
CDO28_RS16885	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS16885	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS16955	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS16955	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS17240	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS17240	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS17240	PWY-6692	Fe(II) oxidation
CDO28_RS17240	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS17250	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS17310	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS17430	PWY-2201	folate transformations I
CDO28_RS17430	PWY-3841	folate transformations II
CDO28_RS17480	PWY-5250	methanogenesis from trimethylamine
CDO28_RS17570	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CDO28_RS17570	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CDO28_RS17570	PWY-6269	adenosylcobalamin salvage from cobinamide II
CDO28_RS17585	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CDO28_RS17585	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CDO28_RS17585	PWY-6268	adenosylcobalamin salvage from cobalamin
CDO28_RS17585	PWY-6269	adenosylcobalamin salvage from cobinamide II
CDO28_RS17635	PWY-5194	siroheme biosynthesis
CDO28_RS17635	PWY-5441	S-methyl-L-methionine cycle
CDO28_RS17635	PWY-702	L-methionine biosynthesis II
CDO28_RS17635	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CDO28_RS17645	PWY-5443	aminopropanol phosphate biosynthesis I
CDO28_RS17660	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS17660	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS17660	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS17660	PWY-5994	palmitate biosynthesis I (animals and fungi)
CDO28_RS17660	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS17660	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS17660	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS17660	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS17660	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS17660	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS17660	PWYG-321	mycolate biosynthesis
CDO28_RS18120	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS18120	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS18120	PWY-6549	L-glutamine biosynthesis III
CDO28_RS18120	PWY-6963	ammonia assimilation cycle I
CDO28_RS18120	PWY-6964	ammonia assimilation cycle II
CDO28_RS18145	PWY-3341	L-proline biosynthesis III
CDO28_RS18145	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CDO28_RS18225	PWY-7533	gliotoxin biosynthesis
CDO28_RS18675	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CDO28_RS18675	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CDO28_RS18675	PWY-6269	adenosylcobalamin salvage from cobinamide II
CDO28_RS18680	PWY-5508	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide II
CDO28_RS18680	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
CDO28_RS18680	PWY-6269	adenosylcobalamin salvage from cobinamide II
CDO28_RS18685	PWY-7039	phosphatidate metabolism, as a signaling molecule
CDO28_RS18770	PWY-5964	guanylyl molybdenum cofactor biosynthesis
CDO28_RS18770	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
CDO28_RS18780	PWY-6823	molybdenum cofactor biosynthesis
CDO28_RS18800	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CDO28_RS18800	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CDO28_RS18805	PWY-5392	reductive TCA cycle II
CDO28_RS18805	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
CDO28_RS18805	PWY-5690	TCA cycle II (plants and fungi)
CDO28_RS18805	PWY-5913	TCA cycle VI (obligate autotrophs)
CDO28_RS18805	PWY-6728	methylaspartate cycle
CDO28_RS18805	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
CDO28_RS18805	PWY-7254	TCA cycle VII (acetate-producers)
CDO28_RS18805	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
CDO28_RS18815	PWY-181	photorespiration
CDO28_RS18820	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS18820	PWY-5723	Rubisco shunt
CDO28_RS18830	PWY-4081	glutathione redox reactions I
CDO28_RS18835	PWY-6164	3-dehydroquinate biosynthesis I
CDO28_RS18840	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS19060	PWY-7731	CDO28_RS19060
CDO28_RS19240	PWY-7425	2-chloroacrylate degradation I
CDO28_RS19455	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS19455	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS19670	PWY-1881	formate oxidation to CO<sub>2</sub>
CDO28_RS19670	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS19670	PWY-6696	oxalate degradation III
CDO28_RS19690	PWY-6046	dimethylsulfoniopropanoate degradation I (cleavage)
CDO28_RS19690	PWY-6049	superpathway of dimethylsulfoniopropanoate degradation
CDO28_RS19850	PWY-4202	arsenate detoxification I (glutaredoxin)
CDO28_RS19850	PWY-4621	arsenate detoxification II (glutaredoxin)
CDO28_RS19935	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS19935	PWY-7494	choline degradation IV
CDO28_RS20055	PWY-6825	phosphatidylcholine biosynthesis V
CDO28_RS20475	PWY-6409	pyoverdine I biosynthesis
CDO28_RS20475	PWY-6562	norspermidine biosynthesis
CDO28_RS20475	PWY-761	rhizobactin 1021 biosynthesis
CDO28_RS20590	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CDO28_RS20625	PWY-5506	methanol oxidation to formaldehyde IV
CDO28_RS20770	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
CDO28_RS20805	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CDO28_RS20805	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS20805	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CDO28_RS20805	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS20830	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS20830	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS20830	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS20830	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS20830	PWY-5723	Rubisco shunt
CDO28_RS20830	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS20830	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS20830	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS20830	PWY-7003	glycerol degradation to butanol
CDO28_RS20830	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS20830	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS20860	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS20860	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS20860	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS20860	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS20860	PWY-5723	Rubisco shunt
CDO28_RS20860	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS20860	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS20860	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS20860	PWY-7003	glycerol degradation to butanol
CDO28_RS20860	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS20860	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS20945	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS20995	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS21310	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS21380	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS21380	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS21380	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS21380	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS21855	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CDO28_RS21855	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CDO28_RS21855	PWY-7622	UDP-galactofuranose biosynthesis
CDO28_RS22040	PWY-7130	L-glucose degradation
CDO28_RS22050	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS22050	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS22050	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS22050	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS22050	PWY-5723	Rubisco shunt
CDO28_RS22050	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS22050	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS22050	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS22050	PWY-7003	glycerol degradation to butanol
CDO28_RS22050	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS22050	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS22150	PWY-5443	aminopropanol phosphate biosynthesis I
CDO28_RS22255	PWY-6654	phosphopantothenate biosynthesis III
CDO28_RS22260	PWY-2201	folate transformations I
CDO28_RS22260	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS22275	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
CDO28_RS22295	PWY-2941	L-lysine biosynthesis II
CDO28_RS22295	PWY-2942	L-lysine biosynthesis III
CDO28_RS22295	PWY-5097	L-lysine biosynthesis VI
CDO28_RS22335	PWY-2941	L-lysine biosynthesis II
CDO28_RS22335	PWY-2942	L-lysine biosynthesis III
CDO28_RS22335	PWY-5097	L-lysine biosynthesis VI
CDO28_RS22335	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS22335	PWY-6559	spermidine biosynthesis II
CDO28_RS22335	PWY-6562	norspermidine biosynthesis
CDO28_RS22335	PWY-7153	grixazone biosynthesis
CDO28_RS22335	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS22360	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
CDO28_RS22360	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
CDO28_RS22360	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
CDO28_RS22390	PWY-7533	gliotoxin biosynthesis
CDO28_RS22455	PWY-3341	L-proline biosynthesis III
CDO28_RS22455	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
CDO28_RS22580	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS22580	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS22580	PWY-6692	Fe(II) oxidation
CDO28_RS22580	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS22765	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS22765	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS22765	PWY-6692	Fe(II) oxidation
CDO28_RS22765	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS22950	PWY-6823	molybdenum cofactor biosynthesis
CDO28_RS23110	PWY-5367	petroselinate biosynthesis
CDO28_RS23110	PWY-5515	L-arabinose degradation II
CDO28_RS23110	PWY-5525	D-glucuronate degradation I
CDO28_RS23110	PWY-5971	palmitate biosynthesis II (bacteria and plants)
CDO28_RS23110	PWY-5973	<i>cis</i>-vaccenate biosynthesis
CDO28_RS23110	PWY-5989	stearate biosynthesis II (bacteria and plants)
CDO28_RS23110	PWY-5994	palmitate biosynthesis I (animals and fungi)
CDO28_RS23110	PWY-6113	superpathway of mycolate biosynthesis
CDO28_RS23110	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
CDO28_RS23110	PWY-6519	8-amino-7-oxononanoate biosynthesis I
CDO28_RS23110	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS23110	PWY-7663	gondoate biosynthesis (anaerobic)
CDO28_RS23110	PWY-7664	oleate biosynthesis IV (anaerobic)
CDO28_RS23110	PWYG-321	mycolate biosynthesis
CDO28_RS23120	PWY-5278	sulfite oxidation III
CDO28_RS23120	PWY-5340	sulfate activation for sulfonation
CDO28_RS23120	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS23120	PWY-6932	selenate reduction
CDO28_RS23125	PWY-5278	sulfite oxidation III
CDO28_RS23125	PWY-5340	sulfate activation for sulfonation
CDO28_RS23125	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS23125	PWY-6932	selenate reduction
CDO28_RS23195	PWY-6749	CMP-legionaminate biosynthesis I
CDO28_RS23465	PWY-6157	autoinducer AI-1 biosynthesis
CDO28_RS23795	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
CDO28_RS23795	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS23795	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
CDO28_RS23795	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
CDO28_RS23950	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CDO28_RS24255	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS24255	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS24255	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS24255	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS24255	PWY-5723	Rubisco shunt
CDO28_RS24255	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS24255	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS24255	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS24255	PWY-7003	glycerol degradation to butanol
CDO28_RS24255	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS24255	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS24350	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
CDO28_RS24450	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS24450	PWY-7494	choline degradation IV
CDO28_RS24520	PWY-6486	D-galacturonate degradation II
CDO28_RS24520	PWY-6497	D-galactarate degradation II
CDO28_RS24520	PWY-6499	D-glucarate degradation II
CDO28_RS24520	PWY-6501	D-glucuronate degradation II
CDO28_RS24575	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS24575	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS24575	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS24575	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS24575	PWY-5723	Rubisco shunt
CDO28_RS24575	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS24575	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS24575	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS24575	PWY-7003	glycerol degradation to butanol
CDO28_RS24575	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS24575	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS24615	PWY-5250	methanogenesis from trimethylamine
CDO28_RS24660	PWY-6832	2-aminoethylphosphonate degradation II
CDO28_RS25080	PWY-4981	L-proline biosynthesis II (from arginine)
CDO28_RS25135	PWY-5674	nitrate reduction IV (dissimilatory)
CDO28_RS25230	PWY-6610	adenine and adenosine salvage IV
CDO28_RS25240	PWY-6610	adenine and adenosine salvage IV
CDO28_RS25280	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS25280	PWY-7494	choline degradation IV
CDO28_RS25490	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS25625	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS25635	PWY-5692	allantoin degradation to glyoxylate II
CDO28_RS25635	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CDO28_RS25660	PWY-7425	2-chloroacrylate degradation I
CDO28_RS25860	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS25860	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS25860	PWY-6692	Fe(II) oxidation
CDO28_RS25860	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS25880	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
CDO28_RS25880	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
CDO28_RS25910	PWY-5274	sulfide oxidation II (sulfide dehydrogenase)
CDO28_RS26120	PWY-4983	L-citrulline-nitric oxide cycle
CDO28_RS26120	PWY-4984	urea cycle
CDO28_RS26120	PWY-5	canavanine biosynthesis
CDO28_RS26120	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
CDO28_RS26120	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
CDO28_RS26185	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS26185	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS26185	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS26185	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS26185	PWY-5723	Rubisco shunt
CDO28_RS26185	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS26185	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS26185	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS26185	PWY-7003	glycerol degradation to butanol
CDO28_RS26185	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS26185	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS26215	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS26215	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS26215	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS26215	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS26215	PWY-5723	Rubisco shunt
CDO28_RS26215	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS26215	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS26215	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS26215	PWY-7003	glycerol degradation to butanol
CDO28_RS26215	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS26215	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS26245	PWY-5530	sorbitol biosynthesis II
CDO28_RS26245	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS26260	PWY-4381	fatty acid biosynthesis initiation I
CDO28_RS26260	PWY-5743	3-hydroxypropanoate cycle
CDO28_RS26260	PWY-5744	glyoxylate assimilation
CDO28_RS26260	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS26260	PWY-6679	jadomycin biosynthesis
CDO28_RS26260	PWY-6722	candicidin biosynthesis
CDO28_RS26260	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS26320	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
CDO28_RS26395	PWY-5278	sulfite oxidation III
CDO28_RS26395	PWY-5340	sulfate activation for sulfonation
CDO28_RS26395	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS26395	PWY-6932	selenate reduction
CDO28_RS26400	PWY-5278	sulfite oxidation III
CDO28_RS26400	PWY-5340	sulfate activation for sulfonation
CDO28_RS26400	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS26400	PWY-6932	selenate reduction
CDO28_RS26565	PWY-7644	heparin degradation
CDO28_RS26590	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CDO28_RS26590	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CDO28_RS26590	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CDO28_RS26590	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CDO28_RS26600	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
CDO28_RS26600	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
CDO28_RS26600	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
CDO28_RS26600	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
CDO28_RS26655	PWY-6610	adenine and adenosine salvage IV
CDO28_RS26680	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
CDO28_RS26685	PWY-5691	urate degradation to allantoin I
CDO28_RS26685	PWY-7394	urate degradation to allantoin II
CDO28_RS26690	PWY-5691	urate degradation to allantoin I
CDO28_RS26690	PWY-7394	urate degradation to allantoin II
CDO28_RS26695	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS26695	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS26695	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CDO28_RS26695	PWY-6596	adenosine nucleotides degradation I
CDO28_RS26695	PWY-6606	guanosine nucleotides degradation II
CDO28_RS26695	PWY-6607	guanosine nucleotides degradation I
CDO28_RS26695	PWY-6608	guanosine nucleotides degradation III
CDO28_RS26695	PWY-6999	theophylline degradation
CDO28_RS26700	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS26700	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS26700	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CDO28_RS26700	PWY-6596	adenosine nucleotides degradation I
CDO28_RS26700	PWY-6606	guanosine nucleotides degradation II
CDO28_RS26700	PWY-6607	guanosine nucleotides degradation I
CDO28_RS26700	PWY-6608	guanosine nucleotides degradation III
CDO28_RS26700	PWY-6999	theophylline degradation
CDO28_RS26730	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS26730	PWY-6606	guanosine nucleotides degradation II
CDO28_RS26730	PWY-6608	guanosine nucleotides degradation III
CDO28_RS26730	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CDO28_RS26765	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
CDO28_RS26875	PWY-6902	chitin degradation II
CDO28_RS26890	PWY-5028	L-histidine degradation II
CDO28_RS26890	PWY-5030	L-histidine degradation III
CDO28_RS26900	PWY-5028	L-histidine degradation II
CDO28_RS26900	PWY-5030	L-histidine degradation III
CDO28_RS26905	PWY-5028	L-histidine degradation II
CDO28_RS26905	PWY-5030	L-histidine degradation III
CDO28_RS26925	PWY-5532	adenosine nucleotides degradation IV
CDO28_RS26930	PWY-7399	methylphosphonate degradation II
CDO28_RS26935	PWY-5532	adenosine nucleotides degradation IV
CDO28_RS26965	PWY-5250	methanogenesis from trimethylamine
CDO28_RS26995	PWY-5482	pyruvate fermentation to acetate II
CDO28_RS26995	PWY-5485	pyruvate fermentation to acetate IV
CDO28_RS26995	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS27035	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS27035	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS27035	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS27035	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS27035	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS27235	PWY-3221	dTDP-L-rhamnose biosynthesis II
CDO28_RS27235	PWY-6808	dTDP-D-forosamine biosynthesis
CDO28_RS27235	PWY-6942	dTDP-D-desosamine biosynthesis
CDO28_RS27235	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CDO28_RS27235	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CDO28_RS27235	PWY-6974	dTDP-L-olivose biosynthesis
CDO28_RS27235	PWY-6976	dTDP-L-mycarose biosynthesis
CDO28_RS27235	PWY-7104	dTDP-L-megosamine biosynthesis
CDO28_RS27235	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CDO28_RS27235	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CDO28_RS27235	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CDO28_RS27235	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CDO28_RS27235	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CDO28_RS27235	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CDO28_RS27235	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CDO28_RS27235	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CDO28_RS27235	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CDO28_RS27235	PWY-7688	CDO28_RS27235
CDO28_RS27245	PWY-3221	dTDP-L-rhamnose biosynthesis II
CDO28_RS27245	PWY-6808	dTDP-D-forosamine biosynthesis
CDO28_RS27245	PWY-6942	dTDP-D-desosamine biosynthesis
CDO28_RS27245	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CDO28_RS27245	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CDO28_RS27245	PWY-6974	dTDP-L-olivose biosynthesis
CDO28_RS27245	PWY-6976	dTDP-L-mycarose biosynthesis
CDO28_RS27245	PWY-7104	dTDP-L-megosamine biosynthesis
CDO28_RS27245	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CDO28_RS27245	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CDO28_RS27245	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CDO28_RS27245	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CDO28_RS27245	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CDO28_RS27245	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CDO28_RS27245	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CDO28_RS27245	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CDO28_RS27245	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CDO28_RS27245	PWY-7688	CDO28_RS27245
CDO28_RS27350	PWY-5515	L-arabinose degradation II
CDO28_RS27350	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS27350	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
CDO28_RS27355	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
CDO28_RS27380	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
CDO28_RS27380	PWY-7248	pectin degradation III
CDO28_RS27470	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS27470	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS27470	PWY-6692	Fe(II) oxidation
CDO28_RS27470	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS27510	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS27580	PWY-1281	sulfoacetaldehyde degradation I
CDO28_RS27580	PWY-6637	sulfolactate degradation II
CDO28_RS27590	PWY-1281	sulfoacetaldehyde degradation I
CDO28_RS27590	PWY-5482	pyruvate fermentation to acetate II
CDO28_RS27590	PWY-5485	pyruvate fermentation to acetate IV
CDO28_RS27590	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS27590	PWY-6637	sulfolactate degradation II
CDO28_RS27615	PWY-6832	2-aminoethylphosphonate degradation II
CDO28_RS27780	PWY-6046	dimethylsulfoniopropanoate degradation I (cleavage)
CDO28_RS27780	PWY-6049	superpathway of dimethylsulfoniopropanoate degradation
CDO28_RS28055	PWY-6703	preQ<sub>0</sub> biosynthesis
CDO28_RS28065	PWY-6703	preQ<sub>0</sub> biosynthesis
CDO28_RS28075	PWY-3821	galactose degradation III
CDO28_RS28075	PWY-6317	galactose degradation I (Leloir pathway)
CDO28_RS28075	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CDO28_RS28075	PWY-6527	stachyose degradation
CDO28_RS28075	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CDO28_RS28075	PWY-7344	UDP-D-galactose biosynthesis
CDO28_RS28190	PWY-6910	hydroxymethylpyrimidine salvage
CDO28_RS28190	PWY-7356	thiamin salvage IV (yeast)
CDO28_RS28190	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CDO28_RS28205	PWY-6807	xyloglucan degradation II (exoglucanase)
CDO28_RS28295	PWY-6683	sulfate reduction III (assimilatory)
CDO28_RS28310	PWY-5194	siroheme biosynthesis
CDO28_RS28310	PWY-5441	S-methyl-L-methionine cycle
CDO28_RS28310	PWY-702	L-methionine biosynthesis II
CDO28_RS28310	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
CDO28_RS28435	PWY-4261	glycerol degradation I
CDO28_RS28445	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS28445	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS28445	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CDO28_RS28445	PWY-6596	adenosine nucleotides degradation I
CDO28_RS28445	PWY-6606	guanosine nucleotides degradation II
CDO28_RS28445	PWY-6607	guanosine nucleotides degradation I
CDO28_RS28445	PWY-6608	guanosine nucleotides degradation III
CDO28_RS28445	PWY-6999	theophylline degradation
CDO28_RS28455	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS28455	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
CDO28_RS28455	PWY-6538	caffeine degradation III (bacteria, via demethylation)
CDO28_RS28455	PWY-6596	adenosine nucleotides degradation I
CDO28_RS28455	PWY-6606	guanosine nucleotides degradation II
CDO28_RS28455	PWY-6607	guanosine nucleotides degradation I
CDO28_RS28455	PWY-6608	guanosine nucleotides degradation III
CDO28_RS28455	PWY-6999	theophylline degradation
CDO28_RS28480	PWY-5497	purine nucleobases degradation II (anaerobic)
CDO28_RS28480	PWY-6606	guanosine nucleotides degradation II
CDO28_RS28480	PWY-6608	guanosine nucleotides degradation III
CDO28_RS28480	PWY-7442	drosopterin and aurodrosopterin biosynthesis
CDO28_RS28495	PWY-4261	glycerol degradation I
CDO28_RS28520	PWY-3801	sucrose degradation II (sucrose synthase)
CDO28_RS28520	PWY-5054	sorbitol biosynthesis I
CDO28_RS28520	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
CDO28_RS28520	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
CDO28_RS28520	PWY-5659	GDP-mannose biosynthesis
CDO28_RS28520	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS28520	PWY-621	sucrose degradation III (sucrose invertase)
CDO28_RS28520	PWY-622	starch biosynthesis
CDO28_RS28520	PWY-6981	chitin biosynthesis
CDO28_RS28520	PWY-6992	1,5-anhydrofructose degradation
CDO28_RS28520	PWY-7238	sucrose biosynthesis II
CDO28_RS28520	PWY-7347	sucrose biosynthesis III
CDO28_RS28520	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS28605	PWY-5691	urate degradation to allantoin I
CDO28_RS28605	PWY-7394	urate degradation to allantoin II
CDO28_RS28615	PWY-5694	allantoin degradation to glyoxylate I
CDO28_RS28615	PWY-5705	allantoin degradation to glyoxylate III
CDO28_RS28620	PWY-5691	urate degradation to allantoin I
CDO28_RS28620	PWY-7394	urate degradation to allantoin II
CDO28_RS28630	PWY-5532	adenosine nucleotides degradation IV
CDO28_RS28700	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS28700	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS28700	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS28700	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS28925	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CDO28_RS28925	PWY-5940	streptomycin biosynthesis
CDO28_RS28930	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
CDO28_RS29095	PWY-2661	trehalose biosynthesis V
CDO28_RS29095	PWY-6902	chitin degradation II
CDO28_RS29320	PWY-3781	aerobic respiration I (cytochrome c)
CDO28_RS29320	PWY-4521	arsenite oxidation I (respiratory)
CDO28_RS29320	PWY-6692	Fe(II) oxidation
CDO28_RS29320	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
CDO28_RS29320	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
CDO28_RS29680	PWY-5694	allantoin degradation to glyoxylate I
CDO28_RS29680	PWY-5705	allantoin degradation to glyoxylate III
CDO28_RS29715	PWY-5692	allantoin degradation to glyoxylate II
CDO28_RS29715	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
CDO28_RS29815	PWY-622	starch biosynthesis
CDO28_RS29950	PWY-381	nitrate reduction II (assimilatory)
CDO28_RS29950	PWY-5675	nitrate reduction V (assimilatory)
CDO28_RS29950	PWY-6549	L-glutamine biosynthesis III
CDO28_RS29950	PWY-6963	ammonia assimilation cycle I
CDO28_RS29950	PWY-6964	ammonia assimilation cycle II
CDO28_RS29970	PWY-6531	mannitol cycle
CDO28_RS30000	PWY-4381	fatty acid biosynthesis initiation I
CDO28_RS30000	PWY-5743	3-hydroxypropanoate cycle
CDO28_RS30000	PWY-5744	glyoxylate assimilation
CDO28_RS30000	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS30000	PWY-6679	jadomycin biosynthesis
CDO28_RS30000	PWY-6722	candicidin biosynthesis
CDO28_RS30000	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
CDO28_RS30020	PWY-7399	methylphosphonate degradation II
CDO28_RS30035	PWY-7399	methylphosphonate degradation II
CDO28_RS30045	PWY-7399	methylphosphonate degradation II
CDO28_RS30080	PWY-7294	xylose degradation IV
CDO28_RS30080	PWY-7295	L-arabinose degradation IV
CDO28_RS30150	PWY-7723	CDO28_RS30150
CDO28_RS30155	PWY-2661	trehalose biosynthesis V
CDO28_RS30180	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CDO28_RS30210	PWY-4041	&gamma;-glutamyl cycle
CDO28_RS30210	PWY-5826	hypoglycin biosynthesis
CDO28_RS30230	PWY-1361	benzoyl-CoA degradation I (aerobic)
CDO28_RS30230	PWY-2361	3-oxoadipate degradation
CDO28_RS30230	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
CDO28_RS30310	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS30370	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
CDO28_RS30385	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS30385	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS30390	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
CDO28_RS30390	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
CDO28_RS30390	PWY-6897	thiamin salvage II
CDO28_RS30390	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
CDO28_RS30390	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
CDO28_RS30390	PWY-7356	thiamin salvage IV (yeast)
CDO28_RS30390	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
CDO28_RS30455	PWY-6562	norspermidine biosynthesis
CDO28_RS30460	PWY-1361	benzoyl-CoA degradation I (aerobic)
CDO28_RS30460	PWY-5109	2-methylbutanoate biosynthesis
CDO28_RS30460	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
CDO28_RS30460	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
CDO28_RS30460	PWY-5177	glutaryl-CoA degradation
CDO28_RS30460	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
CDO28_RS30460	PWY-6435	4-hydroxybenzoate biosynthesis V
CDO28_RS30460	PWY-6583	pyruvate fermentation to butanol I
CDO28_RS30460	PWY-6863	pyruvate fermentation to hexanol
CDO28_RS30460	PWY-6883	pyruvate fermentation to butanol II
CDO28_RS30460	PWY-6944	androstenedione degradation
CDO28_RS30460	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
CDO28_RS30460	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
CDO28_RS30460	PWY-7007	methyl ketone biosynthesis
CDO28_RS30460	PWY-7046	4-coumarate degradation (anaerobic)
CDO28_RS30460	PWY-7094	fatty acid salvage
CDO28_RS30460	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
CDO28_RS30460	PWY-735	jasmonic acid biosynthesis
CDO28_RS30460	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
CDO28_RS30460	PWY-7606	docosahexaenoate biosynthesis III (mammals)
CDO28_RS30460	PWY-7726	CDO28_RS30460
CDO28_RS30500	PWY-5176	coumarin biosynthesis (via 2-coumarate)
CDO28_RS30580	PWY-6807	xyloglucan degradation II (exoglucanase)
CDO28_RS30590	PWY-3341	L-proline biosynthesis III
CDO28_RS30590	PWY-4981	L-proline biosynthesis II (from arginine)
CDO28_RS30590	PWY-6344	L-ornithine degradation II (Stickland reaction)
CDO28_RS30605	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
CDO28_RS30605	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
CDO28_RS30775	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
CDO28_RS31175	PWY-5101	L-isoleucine biosynthesis II
CDO28_RS31175	PWY-5103	L-isoleucine biosynthesis III
CDO28_RS31175	PWY-5104	L-isoleucine biosynthesis IV
CDO28_RS31175	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS31180	PWY-5941	glycogen degradation II (eukaryotic)
CDO28_RS31180	PWY-6724	starch degradation II
CDO28_RS31180	PWY-6737	starch degradation V
CDO28_RS31180	PWY-7238	sucrose biosynthesis II
CDO28_RS31285	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
CDO28_RS31285	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
CDO28_RS31285	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
CDO28_RS31285	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
CDO28_RS31285	PWY-6978	plastoquinol-9 biosynthesis II
CDO28_RS31305	PWY-2941	L-lysine biosynthesis II
CDO28_RS31305	PWY-2942	L-lysine biosynthesis III
CDO28_RS31305	PWY-5097	L-lysine biosynthesis VI
CDO28_RS31335	PWY-7294	xylose degradation IV
CDO28_RS31335	PWY-7295	L-arabinose degradation IV
CDO28_RS31355	PWY-2301	<i>myo</i>-inositol biosynthesis
CDO28_RS31355	PWY-4702	phytate degradation I
CDO28_RS31355	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
CDO28_RS31460	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS31460	PWY-3162	L-tryptophan degradation V (side chain pathway)
CDO28_RS31460	PWY-5057	L-valine degradation II
CDO28_RS31460	PWY-5076	L-leucine degradation III
CDO28_RS31460	PWY-5078	L-isoleucine degradation II
CDO28_RS31460	PWY-5079	L-phenylalanine degradation III
CDO28_RS31460	PWY-5082	L-methionine degradation III
CDO28_RS31460	PWY-5480	pyruvate fermentation to ethanol I
CDO28_RS31460	PWY-5486	pyruvate fermentation to ethanol II
CDO28_RS31460	PWY-5751	phenylethanol biosynthesis
CDO28_RS31460	PWY-6313	serotonin degradation
CDO28_RS31460	PWY-6333	acetaldehyde biosynthesis I
CDO28_RS31460	PWY-6342	noradrenaline and adrenaline degradation
CDO28_RS31460	PWY-6454	vancomycin resistance I
CDO28_RS31460	PWY-6587	pyruvate fermentation to ethanol III
CDO28_RS31460	PWY-6802	salidroside biosynthesis
CDO28_RS31460	PWY-6871	3-methylbutanol biosynthesis
CDO28_RS31460	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS31460	PWY-7013	L-1,2-propanediol degradation
CDO28_RS31460	PWY-7111	pyruvate fermentation to isobutanol (engineered)
CDO28_RS31460	PWY-7118	chitin degradation to ethanol
CDO28_RS31460	PWY-7396	butanol and isobutanol biosynthesis (engineered)
CDO28_RS31465	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS31540	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
CDO28_RS31550	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS31550	PWY-5723	Rubisco shunt
CDO28_RS31560	PWY-5532	adenosine nucleotides degradation IV
CDO28_RS31560	PWY-5723	Rubisco shunt
CDO28_RS31565	PWY-5532	adenosine nucleotides degradation IV
CDO28_RS31565	PWY-5723	Rubisco shunt
CDO28_RS31570	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS31570	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS31570	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS31570	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS31570	PWY-7385	1,3-propanediol biosynthesis (engineered)
CDO28_RS31575	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
CDO28_RS31575	PWY-5723	Rubisco shunt
CDO28_RS31575	PWY-6891	thiazole biosynthesis II (Bacillus)
CDO28_RS31575	PWY-6892	thiazole biosynthesis I (E. coli)
CDO28_RS31575	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS31575	PWY-7560	methylerythritol phosphate pathway II
CDO28_RS31580	PWY-5723	Rubisco shunt
CDO28_RS31585	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS31605	PWY-6420	pyrroloquinoline quinone biosynthesis
CDO28_RS31820	PWY-2301	<i>myo</i>-inositol biosynthesis
CDO28_RS31820	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
CDO28_RS31820	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
CDO28_RS31820	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
CDO28_RS31820	PWY-6664	di-myo-inositol phosphate biosynthesis
CDO28_RS32075	PWY-2941	L-lysine biosynthesis II
CDO28_RS32075	PWY-2942	L-lysine biosynthesis III
CDO28_RS32075	PWY-5097	L-lysine biosynthesis VI
CDO28_RS32075	PWY-7581	<i>N</i>-acetylneuraminate and <i>N</i>-acetylmannosamine degradation II
CDO28_RS32505	PWY-7533	gliotoxin biosynthesis
CDO28_RS32545	PWY-1001	cellulose biosynthesis
CDO28_RS32555	PWY-5532	adenosine nucleotides degradation IV
CDO28_RS32555	PWY-5723	Rubisco shunt
CDO28_RS32760	PWY-7242	D-fructuronate degradation
CDO28_RS32775	PWY-5839	menaquinol-7 biosynthesis
CDO28_RS32775	PWY-5844	menaquinol-9 biosynthesis
CDO28_RS32775	PWY-5849	menaquinol-6 biosynthesis
CDO28_RS32775	PWY-5890	menaquinol-10 biosynthesis
CDO28_RS32775	PWY-5891	menaquinol-11 biosynthesis
CDO28_RS32775	PWY-5892	menaquinol-12 biosynthesis
CDO28_RS32775	PWY-5895	menaquinol-13 biosynthesis
CDO28_RS32825	PWY-3821	galactose degradation III
CDO28_RS32825	PWY-6317	galactose degradation I (Leloir pathway)
CDO28_RS32825	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CDO28_RS32825	PWY-6527	stachyose degradation
CDO28_RS32825	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CDO28_RS32825	PWY-7344	UDP-D-galactose biosynthesis
CDO28_RS32830	PWY-5129	sphingolipid biosynthesis (plants)
CDO28_RS32985	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
CDO28_RS32985	PWY-7494	choline degradation IV
CDO28_RS32990	PWY-4261	glycerol degradation I
CDO28_RS33000	PWY-4261	glycerol degradation I
CDO28_RS33000	PWY-6118	glycerol-3-phosphate shuttle
CDO28_RS33000	PWY-6952	glycerophosphodiester degradation
CDO28_RS33055	PWY-1042	glycolysis IV (plant cytosol)
CDO28_RS33055	PWY-1622	formaldehyde assimilation I (serine pathway)
CDO28_RS33055	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
CDO28_RS33055	PWY-5484	glycolysis II (from fructose 6-phosphate)
CDO28_RS33055	PWY-5723	Rubisco shunt
CDO28_RS33055	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
CDO28_RS33055	PWY-6886	1-butanol autotrophic biosynthesis
CDO28_RS33055	PWY-6901	superpathway of glucose and xylose degradation
CDO28_RS33055	PWY-7003	glycerol degradation to butanol
CDO28_RS33055	PWY-7124	ethylene biosynthesis V (engineered)
CDO28_RS33055	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
CDO28_RS33480	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
CDO28_RS33480	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
CDO28_RS33480	PWY-7622	UDP-galactofuranose biosynthesis
CDO28_RS33610	PWY-3221	dTDP-L-rhamnose biosynthesis II
CDO28_RS33610	PWY-6808	dTDP-D-forosamine biosynthesis
CDO28_RS33610	PWY-6942	dTDP-D-desosamine biosynthesis
CDO28_RS33610	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CDO28_RS33610	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CDO28_RS33610	PWY-6974	dTDP-L-olivose biosynthesis
CDO28_RS33610	PWY-6976	dTDP-L-mycarose biosynthesis
CDO28_RS33610	PWY-7104	dTDP-L-megosamine biosynthesis
CDO28_RS33610	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CDO28_RS33610	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CDO28_RS33610	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CDO28_RS33610	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CDO28_RS33610	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CDO28_RS33610	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CDO28_RS33610	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CDO28_RS33610	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CDO28_RS33610	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CDO28_RS33610	PWY-7688	CDO28_RS33610
CDO28_RS33620	PWY-3221	dTDP-L-rhamnose biosynthesis II
CDO28_RS33620	PWY-6808	dTDP-D-forosamine biosynthesis
CDO28_RS33620	PWY-6942	dTDP-D-desosamine biosynthesis
CDO28_RS33620	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
CDO28_RS33620	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
CDO28_RS33620	PWY-6974	dTDP-L-olivose biosynthesis
CDO28_RS33620	PWY-6976	dTDP-L-mycarose biosynthesis
CDO28_RS33620	PWY-7104	dTDP-L-megosamine biosynthesis
CDO28_RS33620	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
CDO28_RS33620	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
CDO28_RS33620	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
CDO28_RS33620	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
CDO28_RS33620	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
CDO28_RS33620	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
CDO28_RS33620	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
CDO28_RS33620	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
CDO28_RS33620	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
CDO28_RS33620	PWY-7688	CDO28_RS33620
CDO28_RS33685	PWY-6654	phosphopantothenate biosynthesis III
CDO28_RS34350	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
CDO28_RS34350	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
CDO28_RS34365	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
CDO28_RS34370	PWY-3461	L-tyrosine biosynthesis II
CDO28_RS34370	PWY-3462	L-phenylalanine biosynthesis II
CDO28_RS34370	PWY-5386	methylglyoxal degradation I
CDO28_RS34370	PWY-6120	L-tyrosine biosynthesis III
CDO28_RS34370	PWY-6627	salinosporamide A biosynthesis
CDO28_RS34370	PWY-7626	bacilysin biosynthesis
CDO28_RS34375	PWY-5958	acridone alkaloid biosynthesis
CDO28_RS34375	PWY-6543	4-aminobenzoate biosynthesis
CDO28_RS34375	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
CDO28_RS34375	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
CDO28_RS34440	PWY-6012	acyl carrier protein metabolism I
CDO28_RS34440	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
